1182 114 17 0 chr1 6417 6593 -242657760 + AluJb SINE Alu 3 181 -131 2352 97 3 0 chr1 12398 12708 -242651645 + AluSq SINE Alu 2 312 -1 2236 68 4 0 chr1 12859 13138 -242651215 - AluY SINE Alu -31 280 1 606 258 76 28 chr1 14055 14409 -242649944 - MLT1B LTR MaLR 0 374 18 238 203 7 115 chr1 18686 18834 -242645519 + (ACCTG)n Simple_repeat Simple_repeat 2 133 0 183 213 197 8 chr1 20331 20453 -242643900 - L2 LINE L2 -1168 2146 2002 921 103 7 13 chr1 25333 25488 -242638865 + pTR5 LTR ERV1 239 392 -2046 403 71 36 0 chr1 25488 25544 -242638809 + Alu SINE Alu 235 292 -17 1763 127 0 4 chr1 25554 25687 -242638666 + AluSx SINE Alu 1 134 -178 1851 122 48 7 chr1 25687 25981 -242638372 + AluSg SINE Alu 5 310 0 1763 127 0 4 chr1 25981 26107 -242638246 + AluSx SINE Alu 134 259 -53 1012 110 0 0 chr1 26162 26298 -242638055 + AluSq/x SINE Alu 1 136 -177 2100 114 0 13 chr1 26298 26597 -242637756 + AluSg SINE Alu 1 295 -15 2493 33 0 16 chr1 26600 26903 -242637450 + AluY SINE Alu 4 301 -10 1688 149 23 13 chr1 28600 28901 -242635452 - AluJo SINE Alu -7 305 2 855 176 7 7 chr1 29844 29997 -242634356 - FRAM SINE Alu -13 153 1 539 241 134 19 chr1 30326 30542 -242633811 + L1MC/D LINE L1 5500 5740 -502 1948 101 39 26 chr1 30619 30927 -242633426 + AluSx SINE Alu 1 312 0 186 232 130 29 chr1 32943 33012 -242631341 - MIR SINE MIR -80 182 107 208 264 9 36 chr1 33810 33920 -242630433 + (CCCG)n Simple_repeat Simple_repeat 2 108 0 23 78 0 0 chr1 34237 34288 -242630065 + GC_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr1 34353 34378 -242629975 + GC_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr1 35514 35560 -242628793 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr1 35811 35832 -242628521 + GC_rich Low_complexity Low_complexity 1 21 0 2468 87 0 0 chr1 38404 38715 -242625638 - AluSx SINE Alu -1 311 1 293 67 0 0 chr1 38760 38805 -242625548 + AluSp/q SINE Alu 198 242 -61 200 161 0 0 chr1 39198 39229 -242625124 + G-rich Low_complexity Low_complexity 4 34 0 895 76 111 47 chr1 39284 39456 -242624897 - MER30 DNA MER1_type -47 183 1 21 36 0 0 chr1 39718 39746 -242624607 + GC_rich Low_complexity Low_complexity 1 28 0 185 108 27 0 chr1 46920 46957 -242617396 + C-rich Low_complexity Low_complexity 3 40 0 280 245 7 7 chr1 47291 47430 -242616923 + (TG)n Simple_repeat Simple_repeat 1 139 0 298 290 21 0 chr1 47441 47534 -242616819 + (CGTG)n Simple_repeat Simple_repeat 3 97 0 309 221 11 33 chr1 47547 47728 -242616625 + (TG)n Simple_repeat Simple_repeat 1 177 0 1865 137 0 7 chr1 47995 48280 -242616073 + AluJo SINE Alu 5 287 -25 2276 96 0 0 chr1 48439 48740 -242615613 + AluSx SINE Alu 3 303 -9 267 225 50 88 chr1 49561 49761 -242614592 - L1M4 LINE L1 -3733 2413 2222 2107 96 4 0 chr1 49766 50087 -242614266 - AluSq SINE Alu 0 322 1 228 279 0 0 chr1 50399 50460 -242613893 + C-rich Low_complexity Low_complexity 5 65 0 1251 106 28 0 chr1 52200 52380 -242611973 + AluSg/x SINE Alu 115 299 -13 544 181 0 53 chr1 52396 52529 -242611824 + L1M4 LINE L1 4735 4860 -1286 2275 84 3 0 chr1 55166 55462 -242608891 + AluSg SINE Alu 3 299 -11 209 329 85 0 chr1 55973 56055 -242608298 - MIR SINE MIR -20 242 154 611 204 0 0 chr1 57324 57500 -242606853 + (TG)n Simple_repeat Simple_repeat 1 176 0 273 254 0 0 chr1 57511 57641 -242606712 + (TG)n Simple_repeat Simple_repeat 2 131 0 2154 100 0 0 chr1 57643 57924 -242606429 - AluY SINE Alu -16 295 15 231 148 19 0 chr1 58191 58245 -242606108 + L1MD3 LINE L1 7939 7993 -2 270 315 0 18 chr1 60486 60597 -242603756 + (CCCCG)n Simple_repeat Simple_repeat 2 110 0 236 152 22 0 chr1 62055 62101 -242602252 - MLT1C LTR MaLR -368 99 53 282 270 0 0 chr1 64422 64600 -242599753 + GA-rich Low_complexity Low_complexity 3 180 0 180 281 0 0 chr1 64613 64752 -242599601 + GA-rich Low_complexity Low_complexity 2 140 0 195 100 0 0 chr1 65341 65371 -242598982 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 2205 97 3 3 chr1 69632 69940 -242594413 - AluSg SINE Alu -2 308 1 488 206 6 24 chr1 74391 74561 -242589792 + C-rich Low_complexity Low_complexity 3 169 0 1999 125 16 0 chr1 77432 77736 -242586617 - AluSx SINE Alu -3 309 1 1392 162 4 4 chr1 77771 78000 -242586353 + AluJo SINE Alu 1 229 -83 2099 89 0 20 chr1 79433 79725 -242584628 - AluSx SINE Alu -17 295 10 183 351 18 0 chr1 83996 84053 -242580300 + L2 LINE L2 3250 3307 -6 2086 108 10 0 chr1 84821 85117 -242579236 + AluSx SINE Alu 1 299 -13 293 204 157 0 chr1 85165 85260 -242579093 + MLT1B LTR MaLR 3 104 -270 29 0 0 0 chr1 87737 87766 -242576587 + GC_rich Low_complexity Low_complexity 1 29 0 597 200 0 0 chr1 91227 91337 -242573016 + FLAM_C SINE Alu 1 110 -33 730 206 32 74 chr1 91530 91719 -242572634 + AluJb SINE Alu 4 184 -128 572 141 16 55 chr1 91797 91925 -242572428 + AluJb SINE Alu 189 311 -1 1398 213 45 0 chr1 91933 92220 -242572133 + AluJb SINE Alu 1 300 -12 337 222 7 37 chr1 93180 93457 -242570896 + (CA)n Simple_repeat Simple_repeat 1 268 0 2455 35 6 19 chr1 96328 96639 -242567714 + AluY SINE Alu 1 307 -4 768 287 0 0 chr1 97228 97364 -242566989 + C-rich Low_complexity Low_complexity 1 136 0 374 328 112 11 chr1 97368 97670 -242566683 - L1MCa LINE L1 -1205 1582 1338 2001 42 0 0 chr1 97770 98009 -242566344 + AluY SINE Alu 62 300 -11 2427 197 92 87 chr1 98009 98296 -242566057 - L1M4 LINE L1 -2744 3900 3616 1621 126 0 8 chr1 98296 98534 -242565819 - AluSg/x SINE Alu -2 310 75 2427 197 92 87 chr1 98534 98694 -242565659 - L1M4 LINE L1 -3028 3616 3458 2137 92 33 13 chr1 98694 98998 -242565355 - AluSq SINE Alu -3 310 1 2427 197 92 87 chr1 98998 99193 -242565160 - L1M4 LINE L1 -3186 3458 3266 764 206 0 0 chr1 99193 99319 -242565034 + FLAM_A SINE Alu 5 130 -3 2427 197 92 87 chr1 99319 99473 -242564880 - L1M4 LINE L1 -3378 3266 3114 3765 103 4 10 chr1 99473 99987 -242564366 - MER9 LTR ERVK 0 511 1 2427 197 92 87 chr1 99987 100262 -242564091 - L1M4 LINE L1 -3530 3114 2820 1895 250 95 75 chr1 100720 100923 -242563430 - L1M4 LINE L1 -3800 2844 2646 2297 83 3 0 chr1 100923 101224 -242563129 + AluY SINE Alu 1 302 -9 1895 250 95 75 chr1 101224 101576 -242562777 - L1M4 LINE L1 -3998 2646 2302 1506 208 17 10 chr1 101576 101864 -242562489 + AluJb SINE Alu 5 294 -18 1895 250 95 75 chr1 101864 102679 -242561674 - L1M4 LINE L1 -4342 2302 1439 1654 164 30 10 chr1 102679 102983 -242561370 - AluSx SINE Alu -2 310 1 1895 250 95 75 chr1 102983 103197 -242561156 - L1M4 LINE L1 -5205 1439 1231 278 106 0 0 chr1 103203 103250 -242561103 - AluSq/x SINE Alu -169 133 87 1249 173 4 27 chr1 103251 103341 -242561012 - AluJo SINE Alu -92 220 130 1775 158 10 7 chr1 103341 103632 -242560721 - AluJo SINE Alu -20 292 1 1249 173 4 27 chr1 103632 103766 -242560587 - AluJo SINE Alu -182 130 1 404 292 134 38 chr1 103781 103990 -242560363 - L1M4 LINE L1 -6148 394 166 243 261 159 23 chr1 104032 104120 -242560233 + L2 LINE L2 3210 3309 -4 208 232 0 71 chr1 104978 105090 -242559263 + C-rich Low_complexity Low_complexity 1 104 0 24 32 0 0 chr1 105516 105547 -242558806 + GC_rich Low_complexity Low_complexity 1 31 0 2141 114 3 0 chr1 108826 109123 -242555230 - AluSx SINE Alu -14 298 1 1568 193 10 10 chr1 109174 109475 -242554878 + AluJb SINE Alu 1 301 -11 301 226 71 0 chr1 109723 109807 -242554546 + MSTD LTR MaLR 16 105 -291 225 198 79 8 chr1 110228 110354 -242553999 + (CA)n Simple_repeat Simple_repeat 1 135 0 267 309 65 22 chr1 110635 110774 -242553579 + L1MC3 LINE L1 6705 6849 -936 629 257 27 9 chr1 110900 111122 -242553231 + L1MC3 LINE L1 7320 7545 -240 217 320 0 29 chr1 111836 112008 -242552345 + (CGGG)n Simple_repeat Simple_repeat 3 169 0 1604 134 12 78 chr1 113740 114061 -242550292 - AluJo SINE Alu -12 300 1 202 382 34 0 chr1 114245 114334 -242550019 + MIR SINE MIR 53 144 -118 248 243 14 14 chr1 114417 114491 -242549862 + (CA)n Simple_repeat Simple_repeat 1 74 0 217 306 12 35 chr1 114590 114675 -242549678 + L2 LINE L2 2320 2402 -912 268 234 52 39 chr1 114767 114844 -242549509 + L2 LINE L2 3179 3256 -16 2051 115 10 0 chr1 115012 115307 -242549046 - AluSx SINE Alu -14 298 1 307 163 9 9 chr1 115544 115626 -242548727 + FLAM SINE Alu 58 133 0 366 266 93 103 chr1 118912 119224 -242545129 + HAL1 LINE L1 985 1293 -1214 460 237 171 13 chr1 124001 124229 -242540124 - MLT1C LTR MaLR -203 264 1 221 292 62 31 chr1 125208 125304 -242539049 + MIR SINE MIR 34 132 -76 1473 154 67 4 chr1 128184 128451 -242535902 + AluJb SINE Alu 2 285 -27 1752 161 0 32 chr1 128476 128562 -242535791 - AluJb SINE Alu -11 301 214 6627 102 25 13 chr1 128562 129504 -242534849 - LTR13 LTR ERVK 0 954 1 1752 161 0 32 chr1 129504 129728 -242534625 - AluJb SINE Alu -98 214 1 638 89 0 30 chr1 129739 129840 -242534513 - AluSg/x SINE Alu -14 298 201 270 284 60 17 chr1 130365 130481 -242533872 + L2 LINE L2 2490 2610 -704 376 289 12 36 chr1 130650 130816 -242533537 + (CGTG)n Simple_repeat Simple_repeat 4 165 0 291 313 0 87 chr1 130830 131025 -242533328 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 794 218 45 1 chr1 131185 131547 -242532806 - MER54A LTR ERVL -6 895 489 256 289 41 41 chr1 132699 132820 -242531533 - L2 LINE L2 -1315 1999 1879 1464 90 24 14 chr1 133307 133519 -242530834 - AluY SINE Alu -30 281 68 2190 83 4 0 chr1 133519 133795 -242530558 - AluSp SINE Alu -36 277 1 1624 168 11 0 chr1 135372 135640 -242528713 + AluJo SINE Alu 23 293 -19 1037 110 0 0 chr1 136128 136264 -242528089 + AluSq/x SINE Alu 1 136 -177 1983 116 0 0 chr1 136264 136531 -242527822 + AluSx SINE Alu 1 267 -45 590 184 34 101 chr1 136945 137152 -242527201 + MER68 LTR ERV1 159 351 -211 547 67 22 0 chr1 137203 137292 -242527061 + (TG)n Simple_repeat Simple_repeat 1 91 0 2027 97 0 25 chr1 137294 137573 -242526780 - AluSc SINE Alu -35 274 3 856 96 0 3 chr1 137952 138182 -242526171 + AluSx SINE Alu 1 294 -16 2214 80 7 20 chr1 138182 138482 -242525871 + AluY SINE Alu 1 296 -15 2255 81 0 0 chr1 138523 138831 -242525522 - AluSq SINE Alu 0 308 1 1531 163 78 0 chr1 140338 140608 -242523745 - AluJb SINE Alu -10 302 12 2212 98 0 13 chr1 141100 141406 -242522947 - AluSq SINE Alu -11 302 1 2045 155 50 11 chr1 141532 141893 -242522460 + THE1C LTR MaLR 1 375 0 983 162 29 17 chr1 143320 143335 -242521018 + AluSq SINE Alu 121 134 -179 2341 99 3 0 chr1 143335 143647 -242520706 + AluSp SINE Alu 1 313 0 983 162 29 17 chr1 143647 143804 -242520549 + AluSq SINE Alu 134 295 -18 30 0 0 0 chr1 145164 145194 -242519159 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr1 145624 145646 -242518707 + GC_rich Low_complexity Low_complexity 1 22 0 2513 162 109 17 chr1 147355 147898 -242516455 - MER4B LTR ERV1 -17 593 1 1263 164 9 0 chr1 147898 148124 -242516229 - MER4B-int LTR ERV1 0 6758 6531 2097 117 3 0 chr1 148127 148417 -242515936 - AluSx SINE Alu -18 294 4 2504 166 68 79 chr1 148421 148769 -242515584 - MER4B-int LTR ERV1 -4502 2256 1906 2108 119 0 3 chr1 148769 149064 -242515289 - AluSx SINE Alu -18 294 1 2504 166 68 79 chr1 149064 149191 -242515162 - MER4B-int LTR ERV1 -4852 1906 1779 2361 58 0 3 chr1 149191 149486 -242514867 + AluY SINE Alu 1 294 -17 2504 166 68 79 chr1 149486 149769 -242514584 - MER4B-int LTR ERV1 -4979 1779 1494 2021 139 0 0 chr1 149769 150064 -242514289 + AluSx SINE Alu 1 295 -17 2504 166 68 79 chr1 150064 150131 -242514222 - MER4B-int LTR ERV1 -5264 1494 1428 2204 112 0 0 chr1 150131 150435 -242513918 - AluSq SINE Alu -9 304 1 2504 166 68 79 chr1 150435 150733 -242513620 - MER4B-int LTR ERV1 -5330 1428 698 2551 152 14 42 chr1 150836 151043 -242513310 - MER4B-int LTR ERV1 -6035 723 512 2515 50 0 0 chr1 151043 151343 -242513010 - AluY SINE Alu -10 301 2 2551 152 14 42 chr1 151343 151635 -242512718 - MER4B-int LTR ERV1 -6246 512 238 1010 80 0 29 chr1 151687 151825 -242512528 + AluSc SINE Alu 1 134 -175 2427 57 7 0 chr1 151825 152125 -242512228 + AluY SINE Alu 1 302 -9 1517 163 62 0 chr1 152125 152431 -242511922 - MER4B LTR ERV1 -283 327 3 298 257 86 9 chr1 153795 153900 -242510453 - MIR SINE MIR -117 145 33 2448 57 0 0 chr1 154395 154692 -242509661 - AluY SINE Alu -12 299 3 2157 119 3 0 chr1 155059 155362 -242508991 + AluSp SINE Alu 1 304 -9 180 77 0 0 chr1 157330 157356 -242506997 + (CCA)n Simple_repeat Simple_repeat 2 27 0 207 122 58 70 chr1 159580 159752 -242504601 + (TCTCTG)n Simple_repeat Simple_repeat 1 170 0 280 125 56 56 chr1 159800 160125 -242504228 + (TCTCTG)n Simple_repeat Simple_repeat 1 325 0 279 116 52 64 chr1 160182 160354 -242503999 + (TCTCTG)n Simple_repeat Simple_repeat 1 170 0 276 325 0 38 chr1 160354 160511 -242503842 + C-rich Low_complexity Low_complexity 5 155 0 202 183 0 84 chr1 163965 164036 -242500317 + C-rich Low_complexity Low_complexity 4 68 0 213 65 0 0 chr1 164205 164236 -242500117 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 211 235 12 37 chr1 164248 164329 -242500024 + (CGGGG)n Simple_repeat Simple_repeat 1 79 0 264 325 26 13 chr1 166996 167147 -242497206 + (CACG)n Simple_repeat Simple_repeat 4 156 0 2133 103 17 0 chr1 171008 171310 -242493043 - AluSp SINE Alu -6 307 1 976 161 0 40 chr1 171313 171487 -242492866 - AluJb SINE Alu -18 294 128 1652 148 36 26 chr1 171500 171803 -242492550 - AluJo SINE Alu -6 306 1 189 238 48 60 chr1 171938 172022 -242492331 + L2 LINE L2 2230 2312 -1002 212 329 12 0 chr1 176911 176996 -242487357 + (CA)n Simple_repeat Simple_repeat 1 86 0 27 0 0 0 chr1 177900 177927 -242486426 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr1 177986 178009 -242486344 + GC_rich Low_complexity Low_complexity 1 23 0 1797 91 0 4 chr1 178154 178396 -242485957 + AluSc SINE Alu 63 303 -6 457 258 24 0 chr1 178487 178611 -242485742 + MER66-int LTR ERV1 213 339 -6337 286 175 35 0 chr1 178756 178813 -242485540 - AluSp/q SINE Alu -5 298 240 1400 84 0 0 chr1 178814 178993 -242485360 - AluY SINE Alu -132 179 1 442 172 108 0 chr1 179027 179120 -242485233 - MER66B LTR ERV1 0 486 384 760 233 11 23 chr1 179120 179296 -242485057 - AluSq SINE Alu -3 310 137 1919 112 22 0 chr1 179311 179580 -242484773 - AluSx SINE Alu -37 275 1 445 298 45 20 chr1 179607 179805 -242484548 - MER66B LTR ERV1 -142 344 142 2040 94 43 0 chr1 182305 182582 -242481771 - AluSx SINE Alu -23 289 1 1350 164 98 0 chr1 182603 182716 -242481637 - AluJo SINE Alu -44 268 168 2559 38 0 22 chr1 182716 183034 -242481319 - AluY SINE Alu 0 311 1 1350 164 98 0 chr1 183034 183164 -242481189 - AluJo SINE Alu -144 168 1 312 61 41 0 chr1 183164 183213 -242481140 - AluJo SINE Alu -167 135 85 1599 120 43 0 chr1 183288 183522 -242480831 - AluSx SINE Alu -68 244 1 935 74 0 0 chr1 184039 184160 -242480193 + AluSg/x SINE Alu 182 302 -8 1732 122 26 51 chr1 184161 184473 -242479880 + AluSx SINE Alu 2 305 -7 353 231 136 0 chr1 184700 184869 -242479484 - MER63 DNA MER1_type -45 1017 826 240 265 0 15 chr1 184948 184991 -242479362 - AluJo SINE Alu -123 179 136 1895 128 0 52 chr1 184991 185297 -242479056 - AluSx SINE Alu -22 290 1 240 265 0 15 chr1 185297 185321 -242479032 - AluJo SINE Alu -166 136 113 2263 91 13 0 chr1 186636 186944 -242477409 - AluSx SINE Alu 0 312 1 2090 117 0 0 chr1 189639 189930 -242474423 - AluSx SINE Alu -21 291 1 414 142 142 19 chr1 190909 191015 -242473338 + MER20 DNA MER1_type 53 171 -48 2164 111 3 0 chr1 192073 192370 -242471983 - AluSg SINE Alu -12 298 1 309 243 70 119 chr1 192522 192548 -242471805 - HAL1 LINE L1 -2 2505 2479 2352 61 3 0 chr1 192548 192841 -242471512 + AluY SINE Alu 1 294 -17 309 243 70 119 chr1 192841 192886 -242471467 - HAL1 LINE L1 -28 2479 2433 1620 169 35 0 chr1 192886 193170 -242471183 + AluJo SINE Alu 4 297 -15 309 243 70 119 chr1 193170 193190 -242471163 - HAL1 LINE L1 -74 2433 2414 2162 88 10 7 chr1 193190 193485 -242470868 + AluY SINE Alu 1 296 -15 309 243 70 119 chr1 193485 193576 -242470777 - HAL1 LINE L1 -93 2414 2330 2239 97 3 0 chr1 193592 193890 -242470463 - AluSx SINE Alu -13 299 1 1628 149 57 7 chr1 193897 194179 -242470174 - AluJo SINE Alu -16 296 1 1018 157 17 0 chr1 194415 194593 -242469760 + AluJb SINE Alu 120 300 -12 2274 90 0 0 chr1 194593 194894 -242469459 + AluY SINE Alu 1 301 -10 255 261 85 24 chr1 194985 195150 -242469203 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 379 243 47 24 chr1 195171 195420 -242468933 + (CTCA)n Simple_repeat Simple_repeat 1 254 0 255 318 6 11 chr1 195450 195626 -242468727 + (CA)n Simple_repeat Simple_repeat 1 175 0 * 378 268 36 40 chr1 195528 195871 -242468482 + (CTCA)n Simple_repeat Simple_repeat 1 341 0 437 256 64 21 chr1 195948 196289 -242468064 + (CTCA)n Simple_repeat Simple_repeat 1 355 0 332 339 0 0 chr1 196226 196394 -242467959 + (CA)n Simple_repeat Simple_repeat 1 168 0 * 431 266 40 29 chr1 196336 196509 -242467844 + (CTCA)n Simple_repeat Simple_repeat 4 178 0 285 204 57 45 chr1 196691 196767 -242467586 - AluJb SINE Alu -89 213 139 1621 155 13 44 chr1 196767 196948 -242467405 - AluJo SINE Alu -6 306 121 2158 113 7 0 chr1 196948 197258 -242467095 - AluSp SINE Alu -1 312 1 2145 105 16 3 chr1 197258 197563 -242466790 - AluSp SINE Alu -4 309 1 1988 128 0 3 chr1 197563 197844 -242466509 - AluSx SINE Alu -18 294 14 1621 155 13 44 chr1 197844 197976 -242466377 - AluJo SINE Alu -188 124 1 285 204 57 45 chr1 197976 197987 -242466366 - AluJb SINE Alu -163 139 125 1937 116 10 20 chr1 198282 198413 -242465940 + AluSq SINE Alu 4 135 -178 2360 88 0 0 chr1 198413 198709 -242465644 + AluSg SINE Alu 2 297 -13 2324 76 0 10 chr1 198709 199009 -242465344 + AluY SINE Alu 1 298 -13 1937 116 10 20 chr1 199009 199179 -242465174 + AluSq SINE Alu 133 303 -10 650 159 68 38 chr1 199180 199312 -242465041 + FRAM SINE Alu 9 144 -32 1393 128 0 0 chr1 199313 199509 -242464844 - AluSg/x SINE Alu -15 297 102 2258 94 0 3 chr1 199512 199809 -242464544 - AluSc SINE Alu -13 296 1 2300 96 0 3 chr1 199810 200113 -242464240 - AluSx SINE Alu -10 302 1 243 304 78 10 chr1 201219 201321 -242463032 + L2 LINE L2 3158 3266 -6 184 264 6 6 chr1 201380 201539 -242462814 + (TG)n Simple_repeat Simple_repeat 2 160 0 288 273 0 0 chr1 201584 201760 -242462593 + (TG)n Simple_repeat Simple_repeat 1 176 0 1029 211 127 24 chr1 204720 204794 -242459559 + MER54A LTR ERVL 489 554 -347 1857 128 10 14 chr1 204794 205084 -242459269 - AluSq SINE Alu -22 291 3 1029 211 127 24 chr1 205084 205378 -242458975 + MER54A LTR ERVL 554 895 -6 189 0 0 0 chr1 205966 205987 -242458366 + (GGCTG)n Simple_repeat Simple_repeat 1 21 0 190 324 14 0 chr1 207033 207107 -242457246 + MIR SINE MIR 56 130 -132 180 111 0 0 chr1 211606 211633 -242452720 + (TG)n Simple_repeat Simple_repeat 1 27 0 394 333 11 11 chr1 211706 211883 -242452470 + (TG)n Simple_repeat Simple_repeat 1 177 0 296 286 4 18 chr1 211940 212218 -242452135 + (TG)n Simple_repeat Simple_repeat 1 273 0 255 258 0 38 chr1 212223 212409 -242451944 + (CGTG)n Simple_repeat Simple_repeat 1 179 0 201 188 0 80 chr1 215229 215341 -242449012 + (CTCCG)n Simple_repeat Simple_repeat 4 106 0 202 260 0 52 chr1 219359 219455 -242444898 + (CAGGG)n Simple_repeat Simple_repeat 5 95 0 1300 96 15 20 chr1 221545 221742 -242442611 + AluSg/x SINE Alu 110 305 -7 562 189 78 20 chr1 221776 221929 -242442424 - L1MC4a LINE L1 -1260 6548 6387 25 31 0 0 chr1 222185 222217 -242442136 + GC_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chr1 222347 222396 -242441957 + GC_rich Low_complexity Low_complexity 1 49 0 245 146 31 73 chr1 222549 222645 -242441708 + C-rich Low_complexity Low_complexity 5 96 0 359 306 41 0 chr1 226330 226500 -242437853 + C-rich Low_complexity Low_complexity 3 179 0 300 247 45 45 chr1 226492 226670 -242437683 + (CCCCG)n Simple_repeat Simple_repeat 2 179 0 * 383 293 43 0 chr1 226576 226740 -242437613 + C-rich Low_complexity Low_complexity 3 173 0 349 301 43 0 chr1 226776 226939 -242437414 + C-rich Low_complexity Low_complexity 4 173 0 350 308 41 0 chr1 226970 227139 -242437214 + C-rich Low_complexity Low_complexity 4 179 0 291 222 11 83 chr1 227188 227368 -242436985 + CT-rich Low_complexity Low_complexity 1 167 0 * 343 317 37 0 chr1 227365 227529 -242436824 + C-rich Low_complexity Low_complexity 3 172 0 245 222 28 19 chr1 227690 227798 -242436555 + (CCGCG)n Simple_repeat Simple_repeat 4 112 0 24 0 0 0 chr1 227878 227902 -242436451 + GC_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr1 228016 228057 -242436296 + GC_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr1 228373 228406 -242435947 + GC_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1 232037 232062 -242432291 + GC_rich Low_complexity Low_complexity 1 25 0 187 176 0 54 chr1 235539 235613 -242428740 + G-rich Low_complexity Low_complexity 2 71 0 1678 145 0 0 chr1 235981 236229 -242428124 + AluSx SINE Alu 55 302 -10 1979 121 24 17 chr1 236234 236532 -242427821 + AluSq SINE Alu 1 300 -13 2334 83 3 0 chr1 236571 236873 -242427480 + AluSx SINE Alu 2 304 -8 737 104 104 49 chr1 236877 237021 -242427332 - FRAM SINE Alu -30 146 1 2189 86 6 22 chr1 237035 237348 -242427005 + AluSq SINE Alu 1 308 -5 575 315 89 78 chr1 237515 237791 -242426562 + L1MEc LINE L1 1390 1661 -4554 2247 39 3 43 chr1 237791 238096 -242426257 - AluY SINE Alu -18 293 1 575 315 89 78 chr1 238096 238303 -242426050 + L1MEc LINE L1 1661 1864 -4351 1445 150 66 31 chr1 238303 238589 -242425764 + AluJb SINE Alu 2 297 -15 575 315 89 78 chr1 238589 238755 -242425598 + L1MEc LINE L1 1864 2612 -3603 300 331 120 38 chr1 239534 239800 -242424553 - L2 LINE L2 -20 3293 3006 214 236 64 27 chr1 241943 242053 -242422300 + L2 LINE L2 3133 3246 -26 229 113 0 38 chr1 242462 242515 -242421838 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 316 349 0 0 chr1 242660 242809 -242421544 + G-rich Low_complexity Low_complexity 1 149 0 1774 147 7 20 chr1 243465 243757 -242420596 - AluJo SINE Alu -22 290 3 249 143 175 13 chr1 243913 244067 -242420286 + (GGCTG)n Simple_repeat Simple_repeat 1 179 0 305 106 211 7 chr1 244087 244229 -242420124 + (GGCTG)n Simple_repeat Simple_repeat 4 174 0 209 60 40 40 chr1 244804 244854 -242419499 + (CGGGGG)n Simple_repeat Simple_repeat 4 53 0 234 261 6 68 chr1 249683 249859 -242414494 + (TG)n Simple_repeat Simple_repeat 1 165 0 205 284 40 47 chr1 250107 250255 -242414098 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 1631 176 40 10 chr1 452094 452395 -242211958 - AluSq SINE Alu -3 310 1 1243 156 5 0 chr1 452681 452880 -242211473 - AluSx SINE Alu -81 231 32 739 274 55 20 chr1 452887 453417 -242210936 - L1ME2 LINE L1 -47 6117 5549 378 250 15 76 chr1 453768 453900 -242210453 + L1MC4 LINE L1 6966 7089 -953 1800 167 10 6 chr1 453941 454252 -242210101 + AluJo SINE Alu 1 312 0 906 191 0 0 chr1 454252 454414 -242209939 + AluJo/FRAM SINE Alu 132 293 -19 182 91 30 0 chr1 454416 454449 -242209904 + GA-rich Low_complexity Low_complexity 1 34 0 963 312 148 10 chr1 454454 455057 -242209296 + L1MC4 LINE L1 7284 7990 -5 2355 85 0 0 chr1 455283 455588 -242208765 - AluY SINE Alu -6 305 1 2217 101 0 10 chr1 455589 455895 -242208458 - AluSx SINE Alu -9 303 1 2143 72 0 38 chr1 455906 456223 -242208130 - AluY SINE Alu 0 306 1 450 302 105 43 chr1 456428 456915 -242207438 + HAL1 LINE L1 1749 2265 -242 307 289 41 29 chr1 457209 457238 -242207115 + L1M4 LINE L1 2797 2824 -3322 2059 120 36 0 chr1 457238 457539 -242206814 + AluSx SINE Alu 1 312 0 307 289 41 29 chr1 457539 457751 -242206602 + L1M4 LINE L1 2824 3041 -3105 2266 106 0 0 chr1 457823 458134 -242206219 - AluY SINE Alu 0 311 1 2192 114 0 0 chr1 458134 458432 -242205921 - AluSx SINE Alu -14 298 1 2309 98 0 0 chr1 458445 458752 -242205601 - AluY SINE Alu -4 307 1 207 69 0 0 chr1 459630 459659 -242204694 + (CACGC)n Simple_repeat Simple_repeat 4 32 0 2438 47 0 17 chr1 463585 463886 -242200467 + AluY SINE Alu 6 301 -10 1091 68 0 0 chr1 463902 464035 -242200318 + AluSq/x SINE Alu 1 133 -179 2502 48 0 16 chr1 464038 464348 -242200005 + AluY SINE Alu 1 305 -6 2422 72 0 25 chr1 464364 464500 -242199853 + AluSq SINE Alu 1 139 -174 2380 68 0 10 chr1 464500 464808 -242199545 + AluY SINE Alu 1 305 -6 279 0 0 0 chr1 464808 464839 -242199514 + (TA)n Simple_repeat Simple_repeat 1 31 0 2422 72 0 25 chr1 464839 465022 -242199331 + AluSq SINE Alu 137 313 0 292 250 0 26 chr1 468200 468276 -242196077 + (CACG)n Simple_repeat Simple_repeat 3 76 0 213 39 0 0 chr1 468277 468303 -242196050 + (CA)n Simple_repeat Simple_repeat 2 27 0 277 395 26 21 chr1 468695 468885 -242195468 + MIR3 SINE MIR 4 194 -14 2477 47 7 0 chr1 469357 469654 -242194699 - AluY SINE Alu -12 299 1 182 152 0 22 chr1 470847 470893 -242193460 + (CGGGG)n Simple_repeat Simple_repeat 5 49 0 356 253 11 59 chr1 470966 471152 -242193201 + G-rich Low_complexity Low_complexity 3 179 0 * 422 124 15 144 chr1 471023 471225 -242193128 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 259 345 0 0 chr1 471168 471345 -242193008 + G-rich Low_complexity Low_complexity 1 177 0 * 21 36 0 0 chr1 471595 471623 -242192730 + GC_rich Low_complexity Low_complexity 1 28 0 243 350 98 12 chr1 472299 472462 -242191891 + MIR SINE MIR 47 223 -39 695 120 28 28 chr1 473320 473428 -242190925 + AluJo SINE Alu 34 141 -171 1629 173 43 17 chr1 473428 473550 -242190803 + AluJb SINE Alu 1 118 -194 189 0 0 0 chr1 473550 473571 -242190782 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1629 173 43 17 chr1 473571 473749 -242190604 + AluJb SINE Alu 118 309 -3 697 167 0 0 chr1 473755 473863 -242190490 + AluSg/x SINE Alu 191 298 -14 2400 84 0 0 chr1 474157 474466 -242189887 - AluY SINE Alu 0 311 3 2120 124 0 7 chr1 474468 474766 -242189587 - AluSx SINE Alu -16 296 1 761 276 128 43 chr1 475540 475780 -242188573 - MLT1C LTR MaLR -7 460 242 2154 132 3 0 chr1 475780 476090 -242188263 - AluSq SINE Alu -2 311 1 2288 104 0 3 chr1 476098 476406 -242187947 - AluSx SINE Alu -3 309 3 761 276 128 43 chr1 476406 476577 -242187776 - MLT1C LTR MaLR -231 236 4 270 0 0 0 chr1 476782 476812 -242187541 + (GGCTG)n Simple_repeat Simple_repeat 4 33 0 1897 171 0 0 chr1 479336 479646 -242184707 - AluSx SINE Alu -2 310 1 1481 177 79 4 chr1 479648 479925 -242184428 - AluJo SINE Alu -14 298 1 194 71 0 71 chr1 481381 481423 -242182930 + (CGGGGG)n Simple_repeat Simple_repeat 3 41 0 33 66 0 0 chr1 481489 481550 -242182803 + GC_rich Low_complexity Low_complexity 1 61 0 333 212 28 34 chr1 481818 481997 -242182356 + GA-rich Low_complexity Low_complexity 1 178 0 328 250 12 30 chr1 482025 482189 -242182164 + GA-rich Low_complexity Low_complexity 3 163 0 198 220 34 25 chr1 482220 482338 -242182015 + GA-rich Low_complexity Low_complexity 5 123 0 312 367 20 27 chr1 482364 482514 -242181839 + HAL1b LINE L1 1 149 -1199 1632 136 57 4 chr1 484099 484363 -242179990 + AluJo SINE Alu 1 278 -34 2353 52 24 0 chr1 485243 485533 -242178820 - AluSx SINE Alu -15 297 1 309 204 118 11 chr1 486916 487009 -242177344 - MER5A DNA MER1_type -5 184 82 2139 114 3 10 chr1 487615 487923 -242176430 - AluJo SINE Alu -6 306 1 2635 26 0 7 chr1 487936 488245 -242176108 - AluY SINE Alu 0 311 5 371 184 18 53 chr1 488391 488505 -242175848 + MLT1A2 LTR MaLR 111 220 -154 515 271 140 4 chr1 488920 489149 -242175204 + L1MC1 LINE L1 5840 6099 -234 185 65 32 0 chr1 489252 489283 -242175070 + (CAGGG)n Simple_repeat Simple_repeat 4 35 0 274 183 57 3 chr1 489285 489359 -242174994 + L1MC1 LINE L1 6261 6333 0 2433 71 3 0 chr1 489369 489680 -242174673 + AluSx SINE Alu 1 312 0 463 273 100 49 chr1 493067 493430 -242170923 + MLT1A1 LTR MaLR 4 358 -7 232 173 0 31 chr1 493432 493560 -242170793 + (CTCA)n Simple_repeat Simple_repeat 1 124 0 1150 103 13 0 chr1 493570 493726 -242170627 - AluSg/x SINE Alu -21 291 134 2177 94 0 16 chr1 493726 494035 -242170318 - AluSx SINE Alu -8 304 1 332 161 0 23 chr1 494045 494132 -242170221 + (CTCA)n Simple_repeat Simple_repeat 2 86 0 225 297 30 10 chr1 495706 495807 -242168546 - L2 LINE L2 -358 2956 2854 280 291 0 51 chr1 496368 496526 -242167827 + (TCCG)n Simple_repeat Simple_repeat 1 150 0 249 280 43 0 chr1 498366 498459 -242165894 + L1M4 LINE L1 5613 5709 -475 461 300 132 26 chr1 498462 498885 -242165468 + L1MB7 LINE L1 5671 6138 -46 270 326 0 0 chr1 500479 500577 -242163776 - MER47B DNA MER2_type 0 418 321 455 288 119 3 chr1 500588 500907 -242163446 - MER47B DNA MER2_type -51 367 12 477 162 42 6 chr1 501443 501610 -242162743 + (TTGGGG)n Simple_repeat Simple_repeat 2 174 0 302 326 0 41 chr1 503956 504128 -242160225 + (CACG)n Simple_repeat Simple_repeat 4 168 0 244 240 40 13 chr1 505083 505158 -242159195 + L1MB3 LINE L1 5413 5489 -682 327 266 23 0 chr1 505216 505312 -242159041 + L1MB3 LINE L1 5512 5613 -561 2156 101 7 7 chr1 505312 505608 -242158745 + AluSx SINE Alu 2 297 -15 327 266 23 0 chr1 505608 505620 -242158733 + L1MB3 LINE L1 5613 5623 -551 684 91 0 0 chr1 505620 505708 -242158645 - AluY SINE Alu -13 298 211 1732 250 41 30 chr1 505830 506397 -242157956 + L1MB3 LINE L1 5609 6181 -2 207 270 11 60 chr1 507048 507233 -242157120 + C-rich Low_complexity Low_complexity 2 177 0 * 311 253 18 42 chr1 507104 507270 -242157083 + (CCCA)n Simple_repeat Simple_repeat 1 162 0 732 207 39 6 chr1 508576 508755 -242155598 + MER58A DNA MER1_type 40 224 0 2151 110 0 13 chr1 508968 509278 -242155075 + AluSx SINE Alu 3 308 -4 1866 148 0 0 chr1 510448 510731 -242153622 - AluJb SINE Alu -23 289 7 635 242 62 0 chr1 511157 511335 -242153018 + MER58A DNA MER1_type 36 224 0 398 299 119 21 chr1 511340 511534 -242152819 - MIR SINE MIR -22 240 28 1261 208 144 5 chr1 512228 512617 -242151736 - MER54A LTR ERVL 0 901 459 321 289 21 48 chr1 512734 512921 -242151432 + L1M4 LINE L1 3729 3910 -2236 2345 76 0 29 chr1 512950 513265 -242151088 - AluY SINE Alu -5 306 1 627 297 36 89 chr1 514059 514126 -242150227 + L1M4 LINE L1 4369 4438 -1708 831 152 0 8 chr1 514126 514258 -242150095 + FLAM_C SINE Alu 1 131 -2 627 297 36 89 chr1 514258 514442 -242149911 + L1M4 LINE L1 4438 4600 -1546 2090 130 0 0 chr1 514442 514742 -242149611 + AluSx SINE Alu 1 300 -12 627 297 36 89 chr1 514742 514826 -242149527 + L1M4 LINE L1 4600 4687 -1459 411 21 0 0 chr1 516601 516649 -242147704 + (CA)n Simple_repeat Simple_repeat 2 49 0 1559 80 0 0 chr1 517761 517960 -242146393 + AluY SINE Alu 105 303 -8 1009 207 176 100 chr1 518904 519040 -242145313 + MER68 LTR ERV1 4 128 -434 678 136 88 32 chr1 519040 519165 -242145188 + FLAM_C SINE Alu 2 133 0 1009 207 176 100 chr1 519165 519176 -242145177 + MER68 LTR ERV1 128 137 -425 1811 149 40 7 chr1 519176 519477 -242144876 + AluSx SINE Alu 1 311 -1 1009 207 176 100 chr1 519477 519542 -242144811 + MER68 LTR ERV1 137 196 -366 1736 244 129 11 chr1 519542 520006 -242144347 + MLT2B1 LTR ERVL 2 520 0 1009 207 176 100 chr1 520006 520303 -242144050 + MER68 LTR ERV1 196 554 -8 253 289 11 44 chr1 520501 520591 -242143762 + L2 LINE L2 3185 3271 -1 241 225 12 12 chr1 521033 521113 -242143240 + (CACCAT)n Simple_repeat Simple_repeat 4 83 0 535 234 0 22 chr1 521165 521349 -242143004 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 705 204 2 19 chr1 521368 521780 -242142573 + (CACCAT)n Simple_repeat Simple_repeat 1 405 0 351 309 66 7 chr1 521869 522005 -242142348 - MIR SINE MIR -86 176 33 846 184 44 0 chr1 522209 522367 -242141986 - AluJb SINE Alu -55 257 93 268 299 23 0 chr1 523362 523449 -242140904 + MER91A DNA MER1_type 16 104 -92 1732 261 101 47 chr1 523618 524335 -242140018 + L1MB5 LINE L1 5353 6117 -57 2151 112 3 0 chr1 524335 524631 -242139722 - AluSx SINE Alu -15 297 1 1732 261 101 47 chr1 524631 524693 -242139660 + L1MB5 LINE L1 6117 6174 0 1526 170 3 80 chr1 524731 525055 -242139298 + AluJb SINE Alu 1 299 -13 783 200 48 24 chr1 525061 525226 -242139127 + FRAM SINE Alu 1 168 -8 735 278 15 0 chr1 525574 525772 -242138581 + Tigger3(Golem) DNA MER2_type 2837 3037 0 2466 46 0 13 chr1 526699 527005 -242137348 - AluY SINE Alu -9 302 1 1717 142 21 21 chr1 527014 527303 -242137050 - AluJo SINE Alu -23 289 1 201 350 73 36 chr1 528111 528248 -242136105 + MER5A DNA MER1_type 13 154 -35 313 240 40 0 chr1 528290 528390 -242135963 + (TGGA)n Simple_repeat Simple_repeat 1 104 0 534 308 20 20 chr1 528405 528751 -242135602 + (TGGA)n Simple_repeat Simple_repeat 1 346 0 260 268 26 0 chr1 528765 528918 -242135435 + (TAGA)n Simple_repeat Simple_repeat 4 160 0 276 330 25 0 chr1 528932 529050 -242135303 + (TAGA)n Simple_repeat Simple_repeat 4 124 0 219 263 25 0 chr1 529064 529182 -242135171 + (TGGA)n Simple_repeat Simple_repeat 4 124 0 385 321 28 11 chr1 529197 529542 -242134811 + (TAGA)n Simple_repeat Simple_repeat 1 350 0 447 305 29 0 chr1 529556 529730 -242134623 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 410 316 23 17 chr1 529751 529928 -242134425 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 386 188 41 0 chr1 529970 530140 -242134213 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 1387 100 5 0 chr1 531194 531384 -242132969 + AluY SINE Alu 108 298 -13 414 276 266 3 chr1 531386 531672 -242132681 - L1MC4 LINE L1 -1223 6819 6459 471 241 87 100 chr1 531725 531908 -242132445 + LTR16C LTR ERVL 254 438 -53 933 110 16 0 chr1 531908 532035 -242132318 + FLAM_C SINE Alu 1 129 -4 2177 95 0 3 chr1 532045 532366 -242131987 + AluSx SINE Alu 1 320 0 471 241 87 100 chr1 532366 532411 -242131942 + LTR16C LTR ERVL 447 491 0 2310 91 3 3 chr1 532434 532742 -242131611 + AluSq SINE Alu 1 308 -5 183 156 0 0 chr1 532893 532925 -242131428 + (CAGGG)n Simple_repeat Simple_repeat 5 36 0 209 302 47 19 chr1 533005 533111 -242131242 + L2 LINE L2 2950 3058 -255 2301 108 0 0 chr1 534104 534411 -242129942 - AluSx SINE Alu -3 309 3 2355 58 7 0 chr1 534422 534713 -242129640 - AluY SINE Alu -18 293 1 1543 145 16 92 chr1 534714 535031 -242129322 - AluJb SINE Alu -17 295 3 37 23 0 0 chr1 535897 535941 -242128412 + GC_rich Low_complexity Low_complexity 1 44 0 30 77 0 0 chr1 536297 536362 -242127991 + GC_rich Low_complexity Low_complexity 1 65 0 206 179 0 15 chr1 536362 536429 -242127924 + (CCGAG)n Simple_repeat Simple_repeat 5 70 0 36 40 0 0 chr1 536589 536639 -242127714 + GC_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr1 536814 536843 -242127510 + GC_rich Low_complexity Low_complexity 1 29 0 198 143 0 0 chr1 538845 538880 -242125473 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 187 131 0 chr1 540596 540691 -242123662 + MIR SINE MIR 41 146 -83 2162 121 0 6 chr1 542918 543232 -242121121 - AluSx SINE Alu 0 312 1 2197 79 3 7 chr1 544302 544593 -242119760 - AluSc SINE Alu -19 290 1 190 233 47 0 chr1 545295 545338 -242119015 - L2 LINE L2 -2918 396 352 2263 61 10 3 chr1 549285 549578 -242114775 - AluY SINE Alu -16 295 1 293 258 24 24 chr1 549582 549706 -242114647 - L1MC5 LINE L1 -178 7783 7660 321 125 0 0 chr1 549831 549887 -242114466 + (TG)n Simple_repeat Simple_repeat 1 56 0 1507 179 52 10 chr1 550404 550695 -242113658 - AluJo SINE Alu -9 303 1 241 185 0 98 chr1 551741 551833 -242112520 - L1ME LINE L1 -414 5707 5625 2225 71 4 0 chr1 551844 552151 -242112202 - AluY SINE Alu 0 308 1 932 89 0 0 chr1 552318 552442 -242111911 - AluSq/x SINE Alu -189 124 1 1902 120 3 30 chr1 556768 557069 -242107284 - AluSg SINE Alu -17 293 1 238 143 0 48 chr1 557169 557211 -242107142 + MER5A DNA MER1_type 110 149 -40 688 176 7 44 chr1 557302 557438 -242106915 + FLAM_C SINE Alu 1 131 -2 311 247 93 33 chr1 558439 558589 -242105764 + MLT1A1 LTR MaLR 95 253 -112 263 330 6 34 chr1 559184 559426 -242104927 + (CGTG)n Simple_repeat Simple_repeat 1 235 0 2395 78 6 3 chr1 559525 559871 -242104482 - THE1A LTR MaLR -8 347 1 758 135 0 0 chr1 559871 559975 -242104378 + AluSg/x SINE Alu 108 211 -99 2308 59 7 0 chr1 561351 561641 -242102712 + AluY SINE Alu 7 298 -13 1622 181 26 29 chr1 567912 568222 -242096131 + AluJo SINE Alu 1 309 -3 321 308 22 0 chr1 568226 568317 -242096036 + GA-rich Low_complexity Low_complexity 4 96 0 2090 280 108 22 chr1 570478 571164 -242093189 + L1MC4 LINE L1 366 1184 -5537 2108 136 0 3 chr1 571164 571474 -242092879 - AluJb SINE Alu -3 309 1 2090 280 108 22 chr1 571474 571893 -242092460 + L1MC4 LINE L1 1184 1566 -5155 2230 99 3 3 chr1 572047 572359 -242091994 + AluSx SINE Alu 1 312 0 737 168 23 15 chr1 572457 572588 -242091765 + AluJb SINE Alu 1 132 -180 1986 107 3 31 chr1 572590 572909 -242091444 + AluSg SINE Alu 1 310 0 227 219 122 12 chr1 572924 573006 -242091347 + L1MC4 LINE L1 1873 1963 -4577 923 130 0 0 chr1 573133 573264 -242091089 - FLAM_C SINE Alu -2 131 1 701 196 30 60 chr1 573273 573441 -242090912 - AluSg/x SINE Alu -12 298 136 943 241 106 75 chr1 573448 573624 -242090729 + L1MC4 LINE L1 3945 4114 -2426 2162 111 3 0 chr1 573624 573921 -242090432 + AluSx SINE Alu 4 301 -11 943 241 106 75 chr1 573921 573955 -242090398 + L1MC4 LINE L1 4114 4145 -2395 2073 130 3 3 chr1 573955 574262 -242090091 + AluSx SINE Alu 1 307 -5 943 241 106 75 chr1 574262 574598 -242089755 + L1MC4 LINE L1 4145 4509 -2031 2230 256 63 20 chr1 575327 576317 -242088036 + L1MC4 LINE L1 4457 5404 -1154 2027 145 7 0 chr1 576317 576627 -242087726 + AluJb SINE Alu 1 312 0 2230 256 63 20 chr1 576627 577619 -242086734 + L1MC4 LINE L1 5404 6558 0 608 289 11 21 chr1 577831 578018 -242086335 - MER58A DNA MER1_type 0 224 40 466 272 68 0 chr1 578020 578167 -242086186 + MER5A DNA MER1_type 24 180 -9 2031 116 20 0 chr1 578312 578606 -242085747 + AluSg SINE Alu 2 301 -9 2062 122 3 0 chr1 579116 579444 -242084909 + AluSp SINE Alu 1 313 0 735 352 153 16 chr1 579835 580480 -242083873 + HAL1 LINE L1 828 1561 -946 1924 148 0 3 chr1 584042 584339 -242080014 - AluSx SINE Alu -16 296 1 791 155 8 0 chr1 585733 585862 -242078491 + AluJo SINE Alu 5 134 -178 342 358 102 20 chr1 586435 586689 -242077664 + L1MC4 LINE L1 7768 8042 0 2188 86 7 3 chr1 586945 587237 -242077116 + AluSx SINE Alu 1 293 -19 2257 100 7 0 chr1 589911 590210 -242074143 - AluSg SINE Alu -9 301 1 2667 217 68 19 chr1 590735 591056 -242073297 + L1MB3 LINE L1 5258 5562 -621 2140 129 3 0 chr1 591056 591367 -242072986 + AluSx SINE Alu 1 312 0 2084 133 0 10 chr1 591377 591686 -242072667 + AluSx SINE Alu 1 306 -6 2667 217 68 19 chr1 591686 592108 -242072245 + L1MB3 LINE L1 5570 6049 -134 720 272 22 0 chr1 592125 592353 -242072000 - L1MEd LINE L1 -3654 2475 2243 316 235 265 0 chr1 592405 592507 -242071846 + L1ME LINE L1 5312 5440 -681 1937 132 0 17 chr1 593572 593868 -242070485 - AluJb SINE Alu -21 291 1 2508 58 0 3 chr1 596171 596483 -242067870 + AluY SINE Alu 1 311 0 197 273 0 0 chr1 596732 596776 -242067577 + L2 LINE L2 3208 3251 -21 2407 90 0 0 chr1 597811 598121 -242066232 + AluSx SINE Alu 1 310 -2 1990 114 4 0 chr1 598495 598768 -242065585 - AluSx SINE Alu -38 274 1 2120 105 0 13 chr1 598780 599084 -242065269 - AluSx SINE Alu -12 300 1 260 277 142 14 chr1 599186 599327 -242065026 - L1MEd LINE L1 -5382 737 579 2231 94 0 7 chr1 599838 600147 -242064206 - AluSg1 SINE Alu -2 307 1 1990 108 49 0 chr1 600513 600801 -242063552 - AluSx SINE Alu -10 302 1 484 262 159 0 chr1 601849 601977 -242062376 + MLT1C LTR MaLR 192 298 -169 1833 242 28 74 chr1 601977 602556 -242061797 + MLT2B3 LTR ERVL 1 552 -2 484 262 159 0 chr1 602556 602660 -242061693 + MLT1C LTR MaLR 298 461 -6 215 339 0 43 chr1 605793 605979 -242058374 + G-rich Low_complexity Low_complexity 1 178 0 292 192 110 0 chr1 606458 606531 -242057822 + MLT1B LTR MaLR 5 85 -289 * 314 204 13 26 chr1 606524 606611 -242057742 + MLT1B LTR MaLR 265 375 -15 2378 49 7 0 chr1 607349 607637 -242056716 + AluY SINE Alu 6 295 -16 788 138 0 43 chr1 607994 608132 -242056221 - AluSq/x SINE Alu -180 132 1 1106 282 65 8 chr1 608594 608963 -242055390 + MLT2C1 LTR ERVL 1 390 -7 1905 162 0 9 chr1 609249 609564 -242054789 + AluJb SINE Alu 1 312 0 466 259 72 96 chr1 609790 610153 -242054200 - L1MC3 LINE L1 -67 7718 7365 365 263 66 6 chr1 614774 614942 -242049411 - MLT1A2 LTR MaLR 0 374 205 445 326 0 0 chr1 615047 615222 -242049131 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 491 312 0 0 chr1 615248 615667 -242048686 + (CCCTAA)n Simple_repeat Simple_repeat 1 419 0 413 326 11 0 chr1 615690 615868 -242048485 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 350 296 23 17 chr1 615960 616136 -242048217 + (CACCAT)n Simple_repeat Simple_repeat 2 178 0 * 467 326 0 0 chr1 616127 616302 -242048051 + (CCCTAA)n Simple_repeat Simple_repeat 6 180 0 325 317 6 22 chr1 616314 616497 -242047856 + (CCCTAA)n Simple_repeat Simple_repeat 1 180 0 545 181 19 9 chr1 616532 616637 -242047716 - MLT1A2 LTR MaLR -268 106 1 479 282 138 0 chr1 616637 616825 -242047528 + MLT-int LTR MaLR 1496 1709 -26 610 331 117 48 chr1 616828 616864 -242047489 + L1MC/D LINE L1 1263 1295 -5426 1796 134 15 0 chr1 616864 617133 -242047220 + AluSq SINE Alu 2 274 -39 610 331 117 48 chr1 617133 617380 -242046973 + L1MC/D LINE L1 1295 1523 -5198 2120 90 40 10 chr1 617380 617681 -242046672 + AluSq SINE Alu 1 310 -3 610 331 117 48 chr1 617681 618014 -242046339 + L1MC/D LINE L1 1523 1986 -4735 1219 134 0 0 chr1 618014 618201 -242046152 + AluSq SINE Alu 127 313 0 428 274 79 51 chr1 618421 618462 -242045891 + L1MC/D LINE L1 2255 2293 -4247 2255 122 0 0 chr1 618462 618774 -242045579 + AluSq SINE Alu 1 312 -1 428 274 79 51 chr1 618774 619220 -242045133 + L1MC/D LINE L1 2293 2725 -3815 396 0 0 0 chr1 619220 619264 -242045089 + (CA)n Simple_repeat Simple_repeat 1 44 0 428 274 79 51 chr1 619264 619341 -242045012 + L1MC/D LINE L1 2725 2792 -3748 2372 76 0 0 chr1 619341 619642 -242044711 + AluY SINE Alu 1 301 -10 428 274 79 51 chr1 619642 619682 -242044671 + L1MC/D LINE L1 2792 2829 -3711 * 801 283 93 67 chr1 619653 619682 -242044671 + L1MC/D LINE L1 4064 4091 -2449 2298 77 16 16 chr1 619682 619993 -242044360 + AluSx SINE Alu 1 311 -1 801 283 93 67 chr1 619993 620738 -242043615 + L1MC/D LINE L1 4091 4879 -1661 1906 129 11 4 chr1 620738 621017 -242043336 + AluJo SINE Alu 1 281 -31 801 283 93 67 chr1 621017 621385 -242042968 + L1MC/D LINE L1 4879 5236 -1304 260 319 56 0 chr1 621426 621570 -242042783 + L1MC/D LINE L1 5558 5709 -831 233 136 0 23 chr1 621584 621628 -242042725 + L1M LINE L1 5700 5742 -996 2246 251 67 14 chr1 621811 622501 -242041852 + MER21B LTR ERV1 14 739 -124 2386 88 0 0 chr1 623187 623494 -242040859 - AluSc SINE Alu -2 307 1 2164 102 0 7 chr1 624996 625293 -242039060 + AluSq SINE Alu 1 296 -12 204 67 0 0 chr1 625293 625323 -242039030 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 236 325 17 51 chr1 628395 628512 -242035841 - MIR SINE MIR -47 215 103 655 247 36 10 chr1 628704 629136 -242035217 + MLT1D LTR MaLR 35 505 0 189 146 0 24 chr1 629563 629604 -242034749 - L2 LINE L2 -206 3066 3027 327 365 14 28 chr1 630313 630458 -242033895 + L1MC/D LINE L1 6006 6148 -2054 2229 91 10 0 chr1 632181 632478 -242031875 + AluSq SINE Alu 1 300 -13 682 269 143 11 chr1 633575 633939 -242030414 + LTR52 LTR ERVL 2 413 -8 698 139 123 0 chr1 634158 634280 -242030073 - FRAM SINE Alu -39 137 1 1384 145 110 4 chr1 634728 634983 -242029370 + AluJo SINE Alu 1 282 -30 2347 94 0 0 chr1 635249 635558 -242028795 + AluY SINE Alu 1 309 -2 345 374 67 5 chr1 636127 636322 -242028031 - MIR SINE MIR -16 246 40 207 69 0 0 chr1 636341 636370 -242027983 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 35 0 0 chr1 636843 636872 -242027481 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr1 638537 638557 -242025796 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2224 85 0 0 chr1 638898 639230 -242025123 + AluY SINE Alu 1 332 0 2581 150 23 48 chr1 639576 640137 -242024216 + LTR10A LTR ERV1 1 547 -62 933 172 0 0 chr1 641945 642125 -242022228 + G-rich Low_complexity Low_complexity 1 180 0 405 141 0 0 chr1 642125 642196 -242022157 + (GGGGA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr1 645171 645193 -242019160 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr1 645938 645967 -242018386 + AT_rich Low_complexity Low_complexity 1 29 0 650 266 77 0 chr1 646171 646419 -242017934 + L1M3 LINE L1 5283 5549 -634 739 130 84 0 chr1 646421 646552 -242017801 + L1MB2 LINE L1 6029 6170 -1 2184 102 0 16 chr1 646558 646863 -242017490 + AluSq SINE Alu 1 300 -13 546 271 62 71 chr1 647651 647976 -242016377 + MLT1C LTR MaLR 5 326 -64 595 189 27 0 chr1 647978 648089 -242016264 - FLAM_A SINE Alu -5 137 24 260 261 29 0 chr1 648095 648164 -242016189 + MLT1C LTR MaLR 310 380 -10 858 266 88 10 chr1 648164 648461 -242015892 + MLT1A1 LTR MaLR 3 322 -43 195 42 0 0 chr1 648941 648965 -242015388 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 231 209 0 0 chr1 649032 649075 -242015278 + L1ME4a LINE L1 6074 6116 -5 242 358 12 0 chr1 649415 649496 -242014857 - L2 LINE L2 -7 3306 3225 476 354 54 57 chr1 650477 650514 -242013839 + L1MC4a LINE L1 6151 6187 -1621 2186 123 0 0 chr1 650514 650816 -242013537 + AluSx SINE Alu 1 302 -10 476 354 54 57 chr1 650816 651092 -242013261 + L1MC4a LINE L1 6187 6463 -1345 283 348 55 8 chr1 651251 651487 -242012866 + L1MC4 LINE L1 6780 7026 -1016 300 160 0 0 chr1 651491 651541 -242012812 + Alu SINE Alu 1 50 -253 1976 124 3 10 chr1 651541 651839 -242012514 + AluSx SINE Alu 6 301 -11 1989 124 7 13 chr1 652978 653284 -242011069 - AluJo SINE Alu -8 304 1 303 292 39 0 chr1 653555 653685 -242010668 + Charlie1 DNA MER1_type 19 153 -2608 1166 248 58 100 chr1 653691 653748 -242010605 + Charlie1 DNA MER1_type 2083 2141 -620 2159 100 0 26 chr1 653748 654057 -242010296 - AluSx SINE Alu -11 301 1 1166 248 58 100 chr1 654057 654688 -242009665 + Charlie1 DNA MER1_type 2141 2742 -19 264 281 9 18 chr1 655075 655189 -242009164 + C-rich Low_complexity Low_complexity 1 113 0 492 251 86 29 chr1 655320 655495 -242008858 - MER63A DNA MER1_type -25 185 1 1260 286 133 10 chr1 656684 657309 -242007044 + L1MC3 LINE L1 6898 7599 -186 210 357 84 32 chr1 658428 658582 -242005771 - MIR SINE MIR -76 186 25 * 438 303 118 22 chr1 658579 658757 -242005596 + MIR SINE MIR 14 208 -54 1294 266 189 36 chr1 658827 658901 -242005452 + HAL1 LINE L1 973 1034 -1473 2483 50 0 0 chr1 658901 659198 -242005155 + AluY SINE Alu 1 297 -14 1294 266 189 36 chr1 659198 660414 -242003939 + HAL1 LINE L1 1034 2461 -46 22 0 0 0 chr1 660446 660468 -242003885 + AT_rich Low_complexity Low_complexity 1 22 0 2250 99 3 0 chr1 661279 661582 -242002771 - AluSx SINE Alu -8 304 1 21 0 0 0 chr1 664069 664090 -242000263 + GC_rich Low_complexity Low_complexity 1 21 0 764 235 76 11 chr1 665270 665741 -241998612 + MER74A LTR ERVL 25 554 -4 198 186 47 0 chr1 665783 665826 -241998527 + MIR SINE MIR 28 72 -190 473 252 97 0 chr1 666014 666169 -241998184 + MER58 DNA MER1_type 64 233 -108 228 262 27 57 chr1 666778 666943 -241997410 - MIR SINE MIR -15 247 43 224 253 93 93 chr1 668541 668703 -241995650 - MIR3 SINE MIR -46 162 1 339 269 74 27 chr1 669386 669535 -241994818 + MLT1D LTR MaLR 1 156 -349 1031 279 45 5 chr1 670712 671138 -241993215 + L1MB3 LINE L1 2568 3010 -3136 715 185 31 8 chr1 671146 671276 -241993077 - AluJb SINE Alu -179 133 1 362 238 58 10 chr1 671276 671408 -241992945 + L1MB3 LINE L1 3007 3147 -2999 1673 140 4 0 chr1 671408 671658 -241992695 + AluSx SINE Alu 1 251 -61 362 238 58 10 chr1 671658 671697 -241992656 + L1MB3 LINE L1 3147 3183 -2963 * 6819 212 30 38 chr1 671688 672347 -241992006 + L1MB3 LINE L1 3489 4152 -2031 2439 59 0 3 chr1 672347 672653 -241991700 - AluY SINE Alu -6 305 1 6819 212 30 38 chr1 672653 673903 -241990450 + L1MB3 LINE L1 4152 5410 -773 2112 128 0 3 chr1 673903 674208 -241990145 + AluSx SINE Alu 1 304 -8 6819 212 30 38 chr1 674208 674437 -241989916 + L1MB3 LINE L1 5410 5639 -544 2137 131 0 0 chr1 674437 674743 -241989610 + AluJb SINE Alu 1 306 -6 6819 212 30 38 chr1 674743 675262 -241989091 + L1MB3 LINE L1 5639 6133 -50 1653 164 13 30 chr1 675262 675567 -241988786 + AluSx SINE Alu 1 300 -12 6819 212 30 38 chr1 675567 675618 -241988735 + L1MB3 LINE L1 6133 6183 0 543 271 90 24 chr1 675613 675868 -241988485 + L1MB5 LINE L1 5814 6085 -89 * 211 309 43 0 chr1 677559 677653 -241986700 + L2 LINE L2 2220 2317 -997 812 158 0 0 chr1 678956 679076 -241985277 + AluSq/x SINE Alu 1 120 -193 2138 121 3 3 chr1 679131 679438 -241984915 - AluSx SINE Alu -5 307 1 1249 166 18 79 chr1 679563 679747 -241984606 - AluJo SINE Alu -19 293 130 2032 120 3 13 chr1 679747 679883 -241984470 + AluSx SINE Alu 1 137 -175 2250 81 0 7 chr1 679883 680178 -241984175 + AluSc SINE Alu 1 293 -16 2032 120 3 13 chr1 680178 680341 -241984012 + AluSx SINE Alu 137 297 -15 1249 166 18 79 chr1 680341 680434 -241983919 - AluJo SINE Alu -182 130 33 965 199 0 0 chr1 680453 680614 -241983739 + FRAM SINE Alu 1 161 -5 2194 76 0 28 chr1 680615 680929 -241983424 + AluY SINE Alu 1 306 0 792 79 0 0 chr1 680940 681041 -241983312 + AluS SINE Alu 1 101 -212 411 94 0 0 chr1 681159 681212 -241983141 + AluSq/x SINE Alu 68 120 -192 1119 151 5 5 chr1 681267 681452 -241982901 - AluSg/x SINE Alu -5 305 121 2448 61 0 10 chr1 681994 682306 -241982047 + AluY SINE Alu 1 309 -2 2370 67 0 0 chr1 683780 684079 -241980274 + AluY SINE Alu 2 300 -11 259 281 133 10 chr1 685198 685511 -241978842 + L1ME LINE L1 5265 5613 -508 2142 205 16 5 chr1 685515 686070 -241978283 + L1MB7 LINE L1 3872 4432 -1714 258 281 0 0 chr1 686232 686296 -241978057 + C-rich Low_complexity Low_complexity 1 64 0 240 35 0 0 chr1 686346 686375 -241977978 + (CGGGGG)n Simple_repeat Simple_repeat 5 33 0 183 213 0 0 chr1 688234 688309 -241976044 + CT-rich Low_complexity Low_complexity 2 76 0 295 128 12 47 chr1 696165 696251 -241968102 + CT-rich Low_complexity Low_complexity 3 85 0 297 68 0 0 chr1 696381 696425 -241967928 + (CAA)n Simple_repeat Simple_repeat 2 45 0 509 163 0 0 chr1 696432 696512 -241967841 - AluJ/FLAM SINE Alu -232 80 1 2132 210 17 15 chr1 696525 696809 -241967544 + L1MB7 LINE L1 5315 5602 -582 2166 95 14 0 chr1 696809 697105 -241967248 + AluSp SINE Alu 1 300 -13 2132 210 17 15 chr1 697105 697344 -241967009 + L1MB7 LINE L1 5602 5839 -345 266 333 17 8 chr1 697360 697477 -241966876 + (CA)n Simple_repeat Simple_repeat 1 118 0 1726 258 77 31 chr1 704882 705536 -241958817 + L1MB3 LINE L1 5454 6137 -46 682 161 62 8 chr1 705537 705667 -241958686 + AluJo SINE Alu 1 137 -175 1852 140 3 41 chr1 705721 706035 -241958318 - AluJo SINE Alu -10 302 1 213 311 212 0 chr1 707489 707621 -241956732 + MIR SINE MIR 80 239 -23 365 341 28 17 chr1 708271 708450 -241955903 + LTR41 LTR ERVL 3 183 -590 295 311 9 0 chr1 708649 708755 -241955598 - ERVL LTR ERVL -5174 590 484 324 314 48 0 chr1 709376 709500 -241954853 + L2 LINE L2 2415 2544 -770 1327 213 161 20 chr1 709572 709981 -241954372 + MER34C LTR ERV1 36 502 -83 2125 120 7 0 chr1 711602 711910 -241952443 - AluSx SINE Alu -2 310 1 259 250 0 0 chr1 712069 712133 -241952220 + MLT1H LTR MaLR 111 174 -375 231 293 35 17 chr1 712252 712368 -241951985 + MLT1H LTR MaLR 416 533 -16 1327 164 13 4 chr1 713761 713986 -241950367 + AluJb SINE Alu 85 311 -1 2328 100 0 0 chr1 714007 714316 -241950037 + AluSq SINE Alu 1 309 -4 379 193 9 9 chr1 714614 714723 -241949630 + CT-rich Low_complexity Low_complexity 4 112 0 2247 109 0 3 chr1 714830 715141 -241949212 + AluSq SINE Alu 1 310 -3 1927 144 3 0 chr1 715275 715573 -241948780 - AluSx SINE Alu -13 299 1 2024 76 14 4 chr1 716756 717031 -241947322 - AluSx SINE Alu -14 298 21 35 71 0 0 chr1 718033 718103 -241946250 + GC_rich Low_complexity Low_complexity 1 70 0 268 293 187 8 chr1 719271 719517 -241944836 - L2 LINE L2 -9 3304 3015 472 325 97 21 chr1 719586 719809 -241944544 - MIR SINE MIR -28 180 3 284 271 75 45 chr1 720530 720663 -241943690 + MIR SINE MIR 51 187 -75 354 331 40 20 chr1 720682 720830 -241943523 - MIR SINE MIR -103 159 9 428 269 47 0 chr1 722067 722216 -241942137 - MER58C DNA MER1_type -20 195 40 241 237 41 21 chr1 722496 722593 -241941760 + L1MC5 LINE L1 7831 7929 -32 231 188 0 0 chr1 724002 724050 -241940303 + Alu SINE Alu 252 299 -3 * 435 233 27 82 chr1 724047 724193 -241940160 - MER45B DNA AcHobo -255 785 648 362 258 33 46 chr1 724370 724521 -241939832 - MER45B DNA AcHobo -823 217 69 1864 28 0 0 chr1 724877 725092 -241939261 - AluY SINE Alu -14 297 83 2219 113 6 0 chr1 725514 725825 -241938528 - AluSp SINE Alu 0 313 1 949 134 0 0 chr1 725825 725959 -241938394 - AluSq/x SINE Alu -178 135 2 309 258 28 66 chr1 727006 727188 -241937165 + (CAGGG)n Simple_repeat Simple_repeat 5 179 0 182 326 0 0 chr1 729993 730036 -241934317 - L2 LINE L2 -5 3267 3225 1588 248 71 92 chr1 732956 733690 -241930663 - L1MB7 LINE L1 0 6184 5481 1686 141 0 57 chr1 733690 733988 -241930365 + AluJb SINE Alu 15 295 -17 1588 248 71 92 chr1 733988 734365 -241929988 - L1MB7 LINE L1 -703 5481 5098 842 199 0 0 chr1 734694 734850 -241929503 - FRAM SINE Alu -20 156 1 257 362 0 0 chr1 747179 747356 -241916997 + C-rich Low_complexity Low_complexity 1 177 0 614 99 12 56 chr1 752770 752932 -241911421 + (TTCC)n Simple_repeat Simple_repeat 4 158 0 370 55 36 0 chr1 752932 752987 -241911366 + (TC)n Simple_repeat Simple_repeat 1 57 0 880 220 31 135 chr1 752987 753314 -241911039 - AluYb8 SINE Alu -1 317 25 1564 143 112 28 chr1 753325 753612 -241910741 - AluJo SINE Alu -1 311 1 428 323 99 53 chr1 754718 755245 -241909108 + L1M2 LINE L1 1499 4173 -2675 375 245 5 54 chr1 759528 759712 -241904641 + C-rich Low_complexity Low_complexity 6 180 0 239 311 83 67 chr1 767183 767495 -241896858 + L2 LINE L2 2426 2742 -572 183 353 88 48 chr1 768171 768420 -241895933 + L2 LINE L2 2520 2778 -536 2260 95 10 0 chr1 769128 769433 -241894920 + AluSc SINE Alu 1 308 -1 735 148 15 37 chr1 770516 770743 -241893610 - FLAM_C SINE Alu 0 143 6 244 183 50 0 chr1 771664 771724 -241892629 + (CTGGGG)n Simple_repeat Simple_repeat 6 68 0 234 0 0 0 chr1 773542 773568 -241890785 + (CA)n Simple_repeat Simple_repeat 1 26 0 400 132 15 15 chr1 773996 774064 -241890289 + FRAM SINE Alu 28 95 -81 2235 98 0 0 chr1 774088 774394 -241889959 - AluSx SINE Alu -2 310 5 517 351 4 9 chr1 775786 776017 -241888336 - L1MC4 LINE L1 -378 7664 7435 229 154 39 0 chr1 776165 776217 -241888136 - L1MC4 LINE L1 -1185 6857 6804 526 223 23 0 chr1 776332 776507 -241887846 + (CACG)n Simple_repeat Simple_repeat 1 179 0 330 320 0 0 chr1 776524 776624 -241887729 + (CA)n Simple_repeat Simple_repeat 1 100 0 413 306 31 12 chr1 779916 780076 -241884277 + MLT1J LTR MaLR 210 372 -139 300 326 47 0 chr1 780296 780425 -241883928 + MLT1J LTR MaLR 238 372 -139 1120 101 0 0 chr1 782066 782215 -241882138 + AluSq/x SINE Alu 1 149 -164 1703 126 0 8 chr1 782366 782621 -241881732 + AluJb SINE Alu 21 273 -39 322 250 0 0 chr1 782781 782845 -241881508 - MIR SINE MIR -96 166 103 28 0 0 0 chr1 783132 783160 -241881193 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 783327 783350 -241881003 + GC_rich Low_complexity Low_complexity 1 23 0 255 259 0 0 chr1 787334 787388 -241876965 + L2 LINE L2 3211 3264 -8 2050 119 10 10 chr1 787664 787976 -241876377 + AluSx SINE Alu 1 312 0 2947 264 114 50 chr1 788366 789338 -241875015 + L1M4 LINE L1 55 963 -5252 2136 110 7 3 chr1 789338 789662 -241874691 + AluSx SINE Alu 1 312 0 2947 264 114 50 chr1 789662 789771 -241874582 + L1M4 LINE L1 963 1064 -5151 2345 162 27 39 chr1 789771 790017 -241874336 - Tigger2a DNA MER2_type -2274 434 194 2170 96 10 0 chr1 790017 790310 -241874043 + AluSg SINE Alu 3 298 -12 2345 162 27 39 chr1 790310 790502 -241873851 - Tigger2a DNA MER2_type -2514 194 1 2947 264 114 50 chr1 790502 790703 -241873650 + L1M4 LINE L1 1064 1251 -4964 1806 94 0 12 chr1 790703 790947 -241873406 + AluSx SINE Alu 62 302 -10 2947 264 114 50 chr1 790947 791538 -241872815 + L1M4 LINE L1 1251 1803 -4412 1904 136 7 27 chr1 791538 791839 -241872514 + AluJo SINE Alu 1 295 -17 210 37 0 0 chr1 791849 791876 -241872477 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2947 264 114 50 chr1 791876 792393 -241871960 + L1M4 LINE L1 1811 2583 -3632 * 10525 24 9 0 chr1 792390 793771 -241870582 - L1PA3 LINE L1 -750 5396 4003 6801 27 1 0 chr1 793771 794550 -241869803 + L1PA3 LINE L1 5365 6152 -3 2015 136 0 38 chr1 794582 794898 -241869455 - AluSx SINE Alu -7 305 2 331 221 35 0 chr1 794899 794985 -241869368 + L1M4 LINE L1 2586 2674 -3541 387 230 119 16 chr1 795043 795169 -241869184 + L1M4 LINE L1 2631 2769 -3446 723 188 17 23 chr1 795169 795345 -241869008 + L1M4 LINE L1 3655 3829 -2386 228 67 0 0 chr1 795370 795400 -241868953 + (A)n Simple_repeat Simple_repeat 1 30 0 927 146 0 0 chr1 795400 795530 -241868823 + FLAM_C SINE Alu 1 130 -3 1365 190 90 46 chr1 795547 795710 -241868643 + L1M4 LINE L1 4942 5096 -1157 1947 107 46 7 chr1 795710 795991 -241868362 - AluSq SINE Alu -21 292 1 1365 190 90 46 chr1 795991 796253 -241868100 + L1M4 LINE L1 5096 5345 -908 2332 189 97 5 chr1 796253 796697 -241867656 - MER66B LTR ERV1 0 486 2 1365 190 90 46 chr1 796697 796845 -241867508 + L1M4 LINE L1 5345 5485 -768 2155 101 0 3 chr1 796845 797132 -241867221 + AluSc SINE Alu 7 292 -17 2109 113 0 10 chr1 797132 797443 -241866910 + AluY SINE Alu 1 308 -3 1365 190 90 46 chr1 797443 797515 -241866838 + L1M4 LINE L1 5484 5623 -630 2519 262 38 39 chr1 797533 798713 -241865640 + L1M4 LINE L1 4172 5305 -841 1262 157 0 65 chr1 798724 798985 -241865368 - AluJb SINE Alu -1 311 68 2230 74 0 17 chr1 798986 799285 -241865068 + AluY SINE Alu 1 294 -17 231 173 0 0 chr1 857463 857515 -241806838 + (CTG)n Simple_repeat Simple_repeat 3 54 0 2333 74 0 13 chr1 862905 863217 -241801136 + AluY SINE Alu 1 308 -3 579 243 32 46 chr1 863228 863446 -241800907 - L1MB2 LINE L1 -16 6155 5941 2190 88 0 36 chr1 863451 863759 -241800594 + AluSg1 SINE Alu 1 297 -12 189 0 0 0 chr1 863765 863786 -241800567 + (T)n Simple_repeat Simple_repeat 1 21 0 360 306 130 32 chr1 863915 864272 -241800081 - HAL1 LINE L1 -1301 1206 879 541 246 15 0 chr1 864398 864532 -241799821 - L1MB2 LINE L1 -350 5821 5686 962 96 75 91 chr1 864532 864572 -241799781 + MLT2D LTR ERVL 82 121 -293 2196 88 0 23 chr1 864572 864877 -241799476 + AluY SINE Alu 1 298 -13 962 96 75 91 chr1 864877 865035 -241799318 + MLT2D LTR ERVL 121 277 -137 1680 153 36 19 chr1 866666 866973 -241797380 + AluJb SINE Alu 1 312 0 2474 47 0 0 chr1 867322 867620 -241796733 - AluSx SINE Alu -14 298 1 369 210 43 43 chr1 867726 867864 -241796489 + (CCCCG)n Simple_repeat Simple_repeat 4 141 0 1621 133 10 47 chr1 868718 869019 -241795334 + AluSx SINE Alu 1 290 -22 2328 51 10 3 chr1 869019 869313 -241795040 + AluY SINE Alu 1 296 -15 187 308 77 0 chr1 870344 870422 -241793931 + L2 LINE L2 2292 2375 -939 804 164 0 46 chr1 870878 871030 -241793323 + AluJo SINE Alu 1 145 -167 2369 66 0 10 chr1 871030 871331 -241793022 + AluY SINE Alu 1 298 -13 1220 172 48 99 chr1 871332 871646 -241792707 + AluJb SINE Alu 1 298 -14 1948 155 7 0 chr1 871646 871942 -241792411 + AluSx SINE Alu 1 298 -14 436 241 17 0 chr1 871942 872025 -241792328 + L1M4 LINE L1 5610 5697 -487 2096 118 3 3 chr1 872025 872321 -241792032 + AluSx SINE Alu 1 296 -16 436 241 17 0 chr1 872321 872353 -241792000 + L1M4 LINE L1 5697 5727 -457 1091 184 5 19 chr1 872354 872560 -241791793 + AluJb SINE Alu 83 285 -27 1006 169 0 6 chr1 872560 872770 -241791583 - AluSp SINE Alu 0 328 120 1450 114 5 0 chr1 872770 872971 -241791382 - AluSg/x SINE Alu -43 269 68 603 105 28 50 chr1 873073 873254 -241791099 + GA-rich Low_complexity Low_complexity 1 177 0 902 140 7 7 chr1 874379 874522 -241789831 - FRAM SINE Alu -30 146 4 544 236 55 83 chr1 874529 874949 -241789404 - Charlie2 DNA MER1_type -87 2775 2368 2377 73 0 3 chr1 874958 875260 -241789093 + AluY SINE Alu 6 306 -5 2306 68 0 40 chr1 875263 875584 -241788769 + AluY SINE Alu 4 311 0 2280 98 0 13 chr1 875586 875902 -241788451 + AluSx SINE Alu 1 312 0 2543 52 0 3 chr1 875920 876227 -241788126 + AluY SINE Alu 1 306 -5 2076 124 3 3 chr1 876515 876821 -241787532 - AluY SINE Alu -5 306 1 2305 71 0 3 chr1 876821 877115 -241787238 - AluY SINE Alu -18 293 1 2229 82 17 0 chr1 877115 877409 -241786944 - AluSx SINE Alu -13 299 1 1028 281 49 11 chr1 877412 877879 -241786474 - L1M4 LINE L1 -2685 3461 2977 418 235 10 0 chr1 878016 878114 -241786239 - MER81 DNA DNA -15 99 1 277 307 40 7 chr1 878258 878408 -241785945 + (TATG)n Simple_repeat Simple_repeat 4 158 0 225 395 0 0 chr1 878494 878646 -241785707 + (TG)n Simple_repeat Simple_repeat 2 153 0 266 312 52 0 chr1 878652 878806 -241785547 + (TACG)n Simple_repeat Simple_repeat 4 165 0 206 311 62 0 chr1 878783 878944 -241785409 + (TATG)n Simple_repeat Simple_repeat 4 174 0 * 265 391 0 0 chr1 878865 879044 -241785309 + (TG)n Simple_repeat Simple_repeat 2 180 0 218 318 53 7 chr1 879050 879201 -241785152 + (TACG)n Simple_repeat Simple_repeat 4 161 0 * 236 317 48 0 chr1 879178 879345 -241785008 + (TATG)n Simple_repeat Simple_repeat 4 178 0 202 348 17 0 chr1 879414 879532 -241784821 + (TATG)n Simple_repeat Simple_repeat 3 122 0 180 0 0 0 chr1 879797 879817 -241784536 + (CA)n Simple_repeat Simple_repeat 2 21 0 2394 93 3 0 chr1 879865 880177 -241784176 + AluSp SINE Alu 1 313 0 2393 91 0 0 chr1 880193 880502 -241783851 + AluSc SINE Alu 1 309 0 2023 134 0 10 chr1 880551 880858 -241783495 + AluJb SINE Alu 1 304 -8 275 237 99 30 chr1 881241 881372 -241782981 + L1MC5 LINE L1 7361 7500 -461 331 263 94 12 chr1 881390 881550 -241782803 + L1M4 LINE L1 4836 5008 -1138 409 278 3 0 chr1 881843 882453 -241781900 + (CA)n Simple_repeat Simple_repeat 1 612 0 230 228 0 11 chr1 882478 882570 -241781783 + (CA)n Simple_repeat Simple_repeat 1 91 0 335 340 0 0 chr1 883006 883156 -241781197 + (TG)n Simple_repeat Simple_repeat 1 150 0 820 117 0 83 chr1 883882 884027 -241780326 - FLAM_C SINE Alu 0 133 1 2197 87 3 7 chr1 884703 885001 -241779352 - AluSq SINE Alu -16 297 1 258 192 0 19 chr1 885003 885055 -241779298 + L3 LINE CR1 1369 1419 -158 1291 164 18 0 chr1 885644 885869 -241778484 + AluSq SINE Alu 3 231 -82 423 348 112 38 chr1 886655 887616 -241776737 - L1MEd LINE L1 -4863 1256 224 1709 132 16 42 chr1 888415 888725 -241775628 + AluJo SINE Alu 5 306 -6 333 339 52 64 chr1 889184 889417 -241774936 - L1MC4 LINE L1 0 8042 7813 294 242 99 0 chr1 891018 891109 -241773244 - MER91B DNA MER1_type -90 100 1 636 260 17 11 chr1 898021 898202 -241766151 - MER3 DNA MER1_type -27 182 1 1355 294 69 59 chr1 898291 898842 -241765511 - L1M3 LINE L1 -743 5472 4928 2272 91 0 3 chr1 898842 899140 -241765213 + AluSq SINE Alu 3 299 -14 1355 294 69 59 chr1 899140 899479 -241764874 - L1M3 LINE L1 -1287 4928 4605 1746 157 17 10 chr1 899479 899773 -241764580 + AluJo SINE Alu 1 296 -16 1355 294 69 59 chr1 899773 899835 -241764518 - L1M3 LINE L1 -1610 4605 4545 295 145 29 14 chr1 899835 899904 -241764449 + CT-rich Low_complexity Low_complexity 3 72 0 273 281 47 0 chr1 899918 900081 -241764272 - L1M3 LINE L1 -3921 2322 2163 1609 104 0 4 chr1 900184 900415 -241763938 + AluSq SINE Alu 1 230 -83 658 141 0 0 chr1 900556 900648 -241763705 - AluS SINE Alu -220 92 1 2484 237 60 50 chr1 900682 901073 -241763280 + L1ME1 LINE L1 4528 4914 -1252 1855 141 115 12 chr1 901073 901413 -241762940 + THE1C LTR MaLR 1 375 0 2484 237 60 50 chr1 901413 901802 -241762551 + L1ME1 LINE L1 4914 5298 -868 2250 91 0 13 chr1 901802 902100 -241762253 + AluSq SINE Alu 6 299 -14 2484 237 60 50 chr1 902100 902933 -241761420 + L1ME1 LINE L1 5298 6166 0 1863 146 17 3 chr1 902982 903270 -241761083 + AluSx SINE Alu 1 292 -20 363 152 0 43 chr1 903270 903362 -241760991 + GA-rich Low_complexity Low_complexity 1 88 0 808 100 5 58 chr1 903368 903558 -241760795 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1314 147 19 0 chr1 903646 903857 -241760496 + AluJb SINE Alu 97 311 -1 403 217 70 10 chr1 903876 903996 -241760357 + AluJo SINE Alu 1 112 -190 216 111 0 0 chr1 903996 904032 -241760321 + (TA)n Simple_repeat Simple_repeat 2 37 0 403 217 70 10 chr1 904032 904159 -241760194 + AluJo SINE Alu 112 295 -7 2221 111 0 0 chr1 904266 904563 -241759790 + AluSg SINE Alu 1 297 -13 324 318 16 24 chr1 906268 906394 -241757959 + (CACG)n Simple_repeat Simple_repeat 2 126 0 327 238 0 28 chr1 906399 906580 -241757773 + (CA)n Simple_repeat Simple_repeat 1 176 0 2184 121 0 0 chr1 906585 906892 -241757461 - AluJo SINE Alu -5 307 1 1501 135 9 4 chr1 907182 907412 -241756941 - AluJb SINE Alu -81 231 1 2261 82 3 0 chr1 907532 907825 -241756528 + AluSx SINE Alu 1 294 -18 885 261 123 23 chr1 908331 908722 -241755631 + MLT1D LTR MaLR 69 498 -7 31 44 0 0 chr1 910050 910095 -241754258 + AT_rich Low_complexity Low_complexity 1 45 0 2366 61 0 3 chr1 910109 910403 -241753950 - AluY SINE Alu -16 295 3 1724 123 0 73 chr1 911493 911807 -241752546 - AluJb SINE Alu 0 430 146 2088 102 0 39 chr1 911807 911942 -241752411 + AluSq SINE Alu 2 141 -172 2405 65 3 0 chr1 911942 912248 -241752105 + AluY SINE Alu 1 307 -4 2088 102 0 39 chr1 912248 912417 -241751936 + AluSq SINE Alu 141 294 -19 1724 123 0 73 chr1 912417 912550 -241751803 - AluJb SINE Alu -284 146 5 1502 192 20 3 chr1 914742 915034 -241749319 - AluJb SINE Alu -15 297 1 2288 95 3 0 chr1 915042 915346 -241749007 - AluSp SINE Alu -8 305 1 1886 124 6 43 chr1 915412 915555 -241748798 + AluSg SINE Alu 1 148 -162 2364 84 0 0 chr1 915555 915863 -241748490 + AluY SINE Alu 1 308 -3 1886 124 6 43 chr1 915863 916041 -241748312 + AluSg SINE Alu 148 310 0 2244 95 0 0 chr1 916056 916350 -241748003 + AluSg SINE Alu 1 294 -16 188 261 185 27 chr1 919292 919476 -241744877 - L2 LINE L2 -253 3060 2848 838 121 0 35 chr1 919562 919725 -241744628 + FLAM_C SINE Alu 8 143 0 846 251 121 9 chr1 919894 920277 -241744076 + L1MC4 LINE L1 6478 6936 -1090 200 163 0 112 chr1 921249 921347 -241743006 + C-rich Low_complexity Low_complexity 1 87 0 193 104 0 42 chr1 921701 921749 -241742604 + (CGG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr1 922471 922494 -241741859 + AT_rich Low_complexity Low_complexity 1 23 0 2230 71 3 26 chr1 922501 922810 -241741543 + AluY SINE Alu 1 302 -9 1916 121 0 20 chr1 923187 923484 -241740869 - AluSx SINE Alu -21 291 1 2483 55 0 7 chr1 923656 923964 -241740389 + AluY SINE Alu 1 306 -5 2278 101 0 0 chr1 924075 924383 -241739970 - AluSq SINE Alu -5 308 1 2175 90 0 3 chr1 924531 924831 -241739522 + AluY SINE Alu 1 299 -12 1241 142 5 5 chr1 925002 925199 -241739154 + AluSp SINE Alu 1 197 -116 348 43 0 0 chr1 925199 925246 -241739107 + AluSp SINE Alu 87 133 -170 1447 176 17 7 chr1 925251 925546 -241738807 + AluSp SINE Alu 3 300 -13 315 296 102 0 chr1 925857 925965 -241738388 + MIR SINE MIR 112 230 -32 1533 159 69 28 chr1 926205 926494 -241737859 - AluJb SINE Alu 0 312 12 2270 89 0 0 chr1 926580 926873 -241737480 - AluSg SINE Alu -17 293 1 245 375 120 27 chr1 927027 927057 -241737296 - L2 LINE L2 -4 3268 3242 1721 124 79 10 chr1 927057 927347 -241737006 - AluSg SINE Alu 0 310 1 245 375 120 27 chr1 927347 927617 -241736736 - L2 LINE L2 -30 3242 2940 206 320 120 0 chr1 927638 927713 -241736640 + L2 LINE L2 3187 3270 -2 1776 125 72 0 chr1 927814 928093 -241736260 + AluSx SINE Alu 1 299 -13 498 149 20 155 chr1 928818 928918 -241735435 + Charlie1a DNA MER1_type 1 76 -2685 2066 50 54 4 chr1 928918 929195 -241735158 - AluY SINE Alu -20 291 1 498 149 20 155 chr1 929195 929242 -241735111 + Charlie1a DNA MER1_type 76 128 -1327 1794 171 0 10 chr1 929281 929591 -241734762 + AluJb SINE Alu 1 307 -5 1323 221 81 23 chr1 929599 929783 -241734570 + Charlie1a DNA MER1_type 1040 1212 -1549 2380 75 3 0 chr1 929783 930089 -241734264 - AluY SINE Alu -4 307 1 1323 221 81 23 chr1 930089 930297 -241734056 + Charlie1a DNA MER1_type 1212 1455 0 288 307 0 0 chr1 930988 931076 -241733277 - L2 LINE L2 -285 3028 2941 348 300 100 12 chr1 931292 931452 -241732901 - MIR SINE MIR -5 257 84 377 301 59 27 chr1 931825 931876 -241732477 - L1ME4a LINE L1 0 6121 6073 891 130 0 36 chr1 931876 932014 -241732339 + AluJo SINE Alu 1 133 -169 377 301 59 27 chr1 932014 932148 -241732205 - L1ME4a LINE L1 -48 6073 5930 2267 90 7 0 chr1 932196 932495 -241731858 - AluSx SINE Alu -11 301 1 296 236 285 8 chr1 932629 932752 -241731601 + MIR SINE MIR 58 214 -48 481 208 178 10 chr1 932849 932950 -241731403 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 932994 933021 -241731332 + (TC)n Simple_repeat Simple_repeat 1 27 0 799 167 146 0 chr1 933061 933205 -241731148 + AluJo SINE Alu 134 298 -14 1213 205 161 27 chr1 933285 933689 -241730664 - MLT1C LTR MaLR -2 465 8 960 195 12 0 chr1 933841 934005 -241730348 + FRAM SINE Alu 1 166 0 1876 167 0 3 chr1 934021 934333 -241730020 + AluSx SINE Alu 1 311 -1 2062 132 84 0 chr1 934344 934655 -241729698 + MER1B DNA MER1_type 1 337 0 1906 123 3 48 chr1 934700 934881 -241729472 - AluSg SINE Alu -8 302 139 2006 116 7 13 chr1 934881 935191 -241729162 - AluSx SINE Alu -4 308 1 1906 123 3 48 chr1 935191 935325 -241729028 - AluSg SINE Alu -171 139 1 987 111 0 0 chr1 935689 935824 -241728529 - AluSg/x SINE Alu -23 287 153 402 136 0 0 chr1 935824 935883 -241728470 - AluS SINE Alu -248 61 3 573 312 110 18 chr1 935926 936307 -241728046 - MLT1H LTR MaLR -3 546 131 852 161 0 0 chr1 936314 936457 -241727896 + FLAM_C SINE Alu 1 143 0 245 268 0 0 chr1 936631 936687 -241727666 - L2 LINE L2 -9 3304 3249 329 478 25 76 chr1 937236 937550 -241726803 + AluSp SINE Alu 1 298 -5 2283 72 0 3 chr1 937621 937913 -241726440 - AluY SINE Alu -20 291 1 1726 117 23 75 chr1 938791 938980 -241725373 - AluSx SINE Alu -7 305 137 2410 77 0 0 chr1 938980 939291 -241725062 - AluY SINE Alu 0 311 1 1726 117 23 75 chr1 939291 939409 -241724944 - AluSx SINE Alu -175 137 14 1629 171 0 23 chr1 939678 939977 -241724376 + AluJo SINE Alu 1 292 -20 275 226 418 0 chr1 940110 940256 -241724097 + MER20 DNA MER1_type 6 212 -7 1477 163 42 54 chr1 940404 940735 -241723618 - L1MB5 LINE L1 -10 6164 5838 2247 86 0 16 chr1 940751 941055 -241723298 - AluY SINE Alu -11 300 2 915 81 89 0 chr1 941055 941179 -241723174 - AluSq/x SINE Alu -177 135 1 1291 173 28 4 chr1 941179 941428 -241722925 - L1MB5 LINE L1 -356 5824 5570 1839 118 36 4 chr1 941725 942004 -241722349 + AluSx SINE Alu 1 288 -24 1983 135 0 3 chr1 942015 942318 -241722035 + AluSc SINE Alu 1 302 -7 207 69 0 0 chr1 942645 942674 -241721679 + (TG)n Simple_repeat Simple_repeat 2 30 0 1970 123 0 3 chr1 942674 942958 -241721395 - AluSg SINE Alu -27 283 1 1228 141 0 5 chr1 942958 943150 -241721203 - AluSx SINE Alu -11 301 111 748 110 0 0 chr1 943230 943330 -241721023 - AluSx SINE Alu -210 102 3 1888 137 0 23 chr1 943341 943640 -241720713 - AluSx SINE Alu -20 292 1 628 252 0 0 chr1 944106 944229 -241720124 - FLAM_A SINE Alu -9 124 2 2380 84 0 0 chr1 944461 944769 -241719584 + AluY SINE Alu 1 308 -3 334 237 21 0 chr1 944845 944952 -241719401 + L1MC4 LINE L1 7885 8042 0 2255 97 0 0 chr1 944986 945284 -241719069 - AluSx SINE Alu -14 298 1 296 236 285 8 chr1 945418 945541 -241718812 + MIR SINE MIR 58 214 -48 481 208 178 10 chr1 945638 945739 -241718614 + FLAM_C SINE Alu 3 120 -23 210 37 0 0 chr1 945783 945810 -241718543 + (TC)n Simple_repeat Simple_repeat 1 27 0 799 167 146 0 chr1 945850 945994 -241718359 + FRAM SINE Alu 1 162 -14 1213 205 161 27 chr1 946074 946478 -241717875 - MLT1C LTR MaLR -2 465 8 960 195 12 0 chr1 946630 946794 -241717559 + FRAM SINE Alu 1 166 0 1876 167 0 3 chr1 946810 947122 -241717231 + AluSx SINE Alu 1 311 -1 2062 132 84 0 chr1 947133 947444 -241716909 + MER1B DNA MER1_type 1 337 0 1906 123 3 48 chr1 947489 947670 -241716683 - AluSg SINE Alu -8 302 139 2006 116 7 13 chr1 947670 947980 -241716373 - AluSx SINE Alu -4 308 1 1906 123 3 48 chr1 947980 948114 -241716239 - AluSg SINE Alu -171 139 1 987 111 0 0 chr1 948478 948613 -241715740 - AluSg/x SINE Alu -23 287 153 402 136 0 0 chr1 948613 948672 -241715681 - AluS SINE Alu -250 61 3 573 312 110 18 chr1 948715 949096 -241715257 - MLT1H LTR MaLR -3 546 131 852 161 0 0 chr1 949103 949246 -241715107 + FLAM_C SINE Alu 1 143 0 245 268 0 0 chr1 949420 949476 -241714877 - L2 LINE L2 -9 3263 3208 374 331 130 30 chr1 949935 950025 -241714328 - L2 LINE L2 -529 2785 2705 1494 184 85 0 chr1 950025 950308 -241714045 + AluJo SINE Alu 1 307 -5 374 331 130 30 chr1 950308 950586 -241713767 - L2 LINE L2 -609 2705 2380 1814 134 0 28 chr1 950850 951133 -241713220 - AluSx SINE Alu -37 275 1 309 290 98 33 chr1 951142 951346 -241713007 - L2 LINE L2 -1390 1924 1704 1803 112 40 11 chr1 951346 951623 -241712730 - AluSx SINE Alu 0 312 28 1226 166 86 43 chr1 951848 952126 -241712227 + AluJo SINE Alu 22 311 -1 2092 124 7 0 chr1 952142 952441 -241711912 + AluSx SINE Alu 1 301 -11 2217 86 3 13 chr1 953088 953401 -241710952 - AluY SINE Alu -1 310 1 2194 93 7 7 chr1 953502 953803 -241710550 - AluSg1 SINE Alu -8 301 1 2009 117 23 3 chr1 953834 954133 -241710220 + AluSq SINE Alu 1 305 -8 303 310 103 13 chr1 954338 954493 -241709860 + L1MC4a LINE L1 4780 4948 -1198 555 150 97 9 chr1 954843 954956 -241709397 + L2 LINE L2 3188 3310 -3 1191 60 142 87 chr1 954962 955033 -241709320 - MER30 DNA MER1_type 0 230 164 2083 98 21 0 chr1 955033 955319 -241709034 - AluSq SINE Alu -21 292 1 1191 60 142 87 chr1 955319 955330 -241709023 - MER30 DNA MER1_type -66 164 155 2326 76 0 0 chr1 955330 955631 -241708722 - AluY SINE Alu -10 301 1 1191 60 142 87 chr1 955631 955765 -241708588 - MER30 DNA MER1_type -75 155 1 315 287 74 0 chr1 955769 955891 -241708462 + L1MC4a LINE L1 5736 5866 -1942 1979 117 23 7 chr1 956064 956364 -241707989 + AluSq SINE Alu 1 305 -8 2087 97 0 0 chr1 956710 956988 -241707365 - AluY SINE Alu -22 289 12 2313 84 0 0 chr1 957015 957323 -241707030 - AluY SINE Alu -3 308 1 2100 93 26 10 chr1 957958 958260 -241706093 - AluSg1 SINE Alu -1 308 2 549 176 213 0 chr1 958277 958385 -241705968 - FLAM_C SINE Alu -2 131 1 1587 165 30 3 chr1 959543 959840 -241704513 + AluJb SINE Alu 1 305 -7 1213 154 45 103 chr1 960072 960383 -241703970 - AluJo SINE Alu -19 293 1 513 181 86 0 chr1 960393 960509 -241703844 - L1MC4 LINE L1 -480 7562 7437 207 0 0 0 chr1 960821 960844 -241703509 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1054 215 70 37 chr1 960857 961127 -241703226 - AluJo SINE Alu -33 279 1 1888 104 0 4 chr1 961173 961442 -241702911 - AluSx SINE Alu -10 302 35 282 98 0 44 chr1 961578 961630 -241702723 - Alu SINE Alu -9 293 251 1255 98 0 0 chr1 961646 961820 -241702533 - AluY SINE Alu -11 300 127 2214 142 6 0 chr1 961858 962211 -241702142 - L1PA16 LINE L1 -6 6160 5806 1287 47 0 35 chr1 962236 962406 -241701947 - L1PA5 LINE L1 -4 6150 5987 228 67 0 0 chr1 962406 962436 -241701917 + L1P LINE L1 4944 4973 -1173 926 58 0 50 chr1 962436 962575 -241701778 - AluY SINE Alu -179 132 1 261 270 0 16 chr1 962577 962641 -241701712 + C-rich Low_complexity Low_complexity 1 62 0 346 167 3 40 chr1 962800 962900 -241701453 - AluJo SINE Alu -167 135 70 * 1335 226 101 48 chr1 962898 962984 -241701369 - MER119 DNA MER1_type -93 490 410 2031 130 3 0 chr1 962984 963285 -241701068 + AluSx SINE Alu 5 306 -6 1335 226 101 48 chr1 963285 963635 -241700718 - MER119 DNA MER1_type -173 410 31 1152 140 0 121 chr1 964367 964632 -241699721 + Tigger7 DNA MER2_type 2258 2490 -1 2164 101 0 0 chr1 965578 965876 -241698477 + AluSc SINE Alu 1 298 -11 836 118 0 52 chr1 965878 966013 -241698340 + FLAM_C SINE Alu 3 130 -3 1269 194 15 23 chr1 966019 966282 -241698071 + AluJo SINE Alu 38 298 -14 208 233 256 0 chr1 966283 966373 -241697980 - L2 LINE L2 -1 3271 3159 2343 43 7 16 chr1 966580 966884 -241697469 - AluY SINE Alu -10 301 1 1884 139 13 7 chr1 966954 967131 -241697222 - AluSx SINE Alu -2 310 129 2160 96 0 0 chr1 967131 967423 -241696930 - AluSg SINE Alu -16 294 3 1884 139 13 7 chr1 967423 967547 -241696806 - AluSx SINE Alu -183 129 7 667 180 0 43 chr1 967547 967678 -241696675 - FLAM_A SINE Alu -175 127 1 540 326 66 30 chr1 968014 968318 -241696035 + L2 LINE L2 2999 3313 0 299 324 111 28 chr1 968933 969186 -241695167 - L2 LINE L2 -481 2833 2560 1253 147 139 48 chr1 969603 969774 -241694579 - AluJo SINE Alu -3 299 92 2203 72 0 7 chr1 969774 970065 -241694288 + AluY SINE Alu 1 289 -22 1253 147 139 48 chr1 970065 970166 -241694187 - AluJo SINE Alu -210 92 2 2188 97 3 0 chr1 970244 970542 -241693811 - AluSp SINE Alu -14 299 1 31 0 0 0 chr1 970709 970740 -241693613 + AT_rich Low_complexity Low_complexity 1 31 0 1772 74 100 41 chr1 970745 970872 -241693481 - AluSg SINE Alu -25 285 167 2323 76 3 3 chr1 970872 971175 -241693178 - AluSp SINE Alu -9 304 2 1772 74 100 41 chr1 971175 971316 -241693037 - AluSg SINE Alu -143 167 1 539 242 175 48 chr1 971382 971865 -241692488 + L1MCc LINE L1 1169 1716 -4889 2242 77 0 7 chr1 971871 972171 -241692182 + AluSp SINE Alu 1 298 -15 1055 120 25 0 chr1 972171 972329 -241692024 + AluSg/x SINE Alu 134 295 -17 649 260 116 8 chr1 972341 972591 -241691762 + L1MCc LINE L1 1735 2011 -4930 1569 177 21 0 chr1 972603 972885 -241691468 + AluJb SINE Alu 1 288 -24 398 177 76 0 chr1 972885 972964 -241691389 + L1MCc LINE L1 2276 2360 -4581 725 273 114 63 chr1 973011 973422 -241690931 - MER21B LTR ERV1 -407 456 25 9541 132 62 13 chr1 973501 973911 -241690442 - Tigger2 DNA MER2_type -4 2714 2326 1809 119 58 3 chr1 973911 974206 -241690147 - AluSq SINE Alu -2 311 1 9541 132 62 13 chr1 974206 975444 -241688909 - Tigger2 DNA MER2_type -392 2326 984 1048 170 22 27 chr1 975453 975676 -241688677 + AluJo SINE Alu 10 231 -81 189 0 0 0 chr1 975714 975735 -241688618 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1942 127 0 0 chr1 975735 976019 -241688334 - AluSx SINE Alu -28 284 1 229 196 78 0 chr1 976024 976075 -241688278 - L1MC4 LINE L1 -891 7151 7097 501 116 0 0 chr1 976176 976245 -241688108 - AluS SINE Alu -224 89 21 1777 147 6 22 chr1 976295 976608 -241687745 + AluJb SINE Alu 3 310 -2 238 188 171 145 chr1 978374 978608 -241685745 + L1MC5 LINE L1 7277 7516 -445 2333 80 0 0 chr1 979184 979484 -241684869 - AluY SINE Alu -11 300 1 595 305 52 17 chr1 979744 979993 -241684360 + MIR SINE MIR 10 261 -1 1105 200 137 46 chr1 980194 980307 -241684046 - L1ME LINE L1 -476 5690 5589 1464 169 6 66 chr1 980307 980639 -241683714 + AluJo SINE Alu 1 312 0 1105 200 137 46 chr1 980639 980904 -241683449 - L1ME LINE L1 -577 5589 5349 1555 155 32 48 chr1 980904 981076 -241683277 - AluJb SINE Alu -8 304 138 1920 141 7 0 chr1 981076 981367 -241682986 - AluSx SINE Alu -19 293 1 1555 155 32 48 chr1 981367 981503 -241682850 - AluJb SINE Alu -174 138 1 1105 200 137 46 chr1 981503 981772 -241682581 - L1ME LINE L1 -817 5349 5106 2329 81 0 0 chr1 981772 982070 -241682283 - AluY SINE Alu -13 298 1 1904 117 13 23 chr1 982070 982377 -241681976 - AluSc SINE Alu -5 304 1 1105 200 137 46 chr1 982377 982434 -241681919 - L1ME LINE L1 -1059 5107 4923 2189 98 0 0 chr1 982439 982735 -241681618 + AluSx SINE Alu 3 298 -14 358 177 42 21 chr1 982780 982876 -241681477 - L1MC4 LINE L1 0 8042 7945 2360 84 0 0 chr1 982952 983260 -241681093 - AluY SINE Alu -3 308 1 601 236 0 16 chr1 983492 983615 -241680738 + FLAM_A SINE Alu 2 122 -11 1864 137 0 23 chr1 984081 984380 -241679973 + AluSx SINE Alu 1 292 -20 742 110 0 0 chr1 984391 984491 -241679862 + AluSx SINE Alu 3 102 -210 1207 141 0 5 chr1 984571 984763 -241679590 + AluSx SINE Alu 111 301 -11 1950 123 0 3 chr1 984763 985047 -241679306 + AluSg SINE Alu 1 283 -27 207 69 0 0 chr1 985047 985076 -241679277 + (CA)n Simple_repeat Simple_repeat 2 30 0 1959 129 0 3 chr1 985412 985706 -241678647 - AluSc SINE Alu -16 293 1 1821 118 36 4 chr1 985717 985996 -241678357 - AluSx SINE Alu -24 288 1 1343 141 48 20 chr1 986293 986542 -241677811 + L1MB5 LINE L1 5570 5825 -349 909 81 89 0 chr1 986542 986666 -241677687 + AluSq/x SINE Alu 1 135 -178 2226 86 0 16 chr1 986666 986970 -241677383 + AluY SINE Alu 2 300 -11 1551 163 42 54 chr1 986986 987317 -241677036 + L1MB5 LINE L1 5838 6164 -10 277 226 418 0 chr1 987465 987611 -241676742 - MER20 DNA MER1_type -7 212 6 1578 169 0 24 chr1 987747 988043 -241676310 - AluJo SINE Alu -23 289 1 1693 114 23 75 chr1 988312 988430 -241675923 + AluSx SINE Alu 14 137 -175 2390 77 0 0 chr1 988430 988741 -241675612 + AluY SINE Alu 1 311 0 1693 114 23 75 chr1 988741 988928 -241675425 + AluSx SINE Alu 137 303 -9 2373 52 0 0 chr1 989808 990132 -241674221 + AluY SINE Alu 1 324 0 1111 241 130 26 chr1 990151 990338 -241674015 + L1MC4 LINE L1 6430 6596 -1289 438 20 0 0 chr1 990338 990389 -241673964 + (CA)n Simple_repeat Simple_repeat 1 51 0 1111 241 130 26 chr1 990389 990798 -241673555 + L1MC4 LINE L1 6596 7151 -734 1948 123 0 0 chr1 990801 991085 -241673268 + AluSx SINE Alu 1 284 -28 189 0 0 0 chr1 991085 991106 -241673247 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 1048 170 22 27 chr1 991144 991367 -241672986 - AluJo SINE Alu -81 231 10 9557 131 62 13 chr1 991376 992614 -241671739 + Tigger2 DNA MER2_type 984 2326 -392 1809 119 58 3 chr1 992614 992909 -241671444 + AluSq SINE Alu 1 311 -2 9557 131 62 13 chr1 992909 993319 -241671034 + Tigger2 DNA MER2_type 2326 2714 -4 725 273 114 63 chr1 993398 993809 -241670544 + MER21B LTR ERV1 25 456 -407 398 177 76 0 chr1 993856 993935 -241670418 - L1MCc LINE L1 -4581 2360 2276 1569 177 21 0 chr1 993935 994217 -241670136 - AluJb SINE Alu -24 288 1 649 260 116 8 chr1 994229 994479 -241669874 - L1MCc LINE L1 -4930 2011 1735 1055 120 25 0 chr1 994491 994649 -241669704 - AluSg/x SINE Alu -17 293 132 2242 77 0 7 chr1 994649 994949 -241669404 - AluSp SINE Alu -15 298 1 539 242 175 48 chr1 994955 995438 -241668915 - L1MCc LINE L1 -4889 1534 1169 1171 57 0 0 chr1 995504 995645 -241668708 + AluSg1 SINE Alu 1 141 -168 1988 92 7 17 chr1 995645 995938 -241668415 + AluSp SINE Alu 2 291 -22 1016 148 0 0 chr1 996052 996207 -241668146 - FRAM SINE Alu -26 150 1 2032 120 0 3 chr1 996219 996511 -241667842 - AluSx SINE Alu -21 291 1 1166 170 74 48 chr1 996541 996811 -241667542 + AluJo SINE Alu 1 277 -35 2180 53 42 3 chr1 996844 997127 -241667226 + AluY SINE Alu 1 294 -17 2226 96 0 3 chr1 997353 997654 -241666699 + AluSq SINE Alu 1 300 -13 2045 123 7 0 chr1 998037 998339 -241666014 + AluSq SINE Alu 1 304 -9 309 51 0 0 chr1 998478 998517 -241665836 + (TG)n Simple_repeat Simple_repeat 2 40 0 550 208 57 0 chr1 998519 998625 -241665728 - FLAM_C SINE Alu -30 113 2 2149 102 0 0 chr1 999060 999353 -241665000 - AluSp SINE Alu -20 293 1 2166 120 0 0 chr1 1000957 1001257 -241663096 - AluSx SINE Alu -12 300 1 22 35 0 0 chr1 1001394 1001423 -241662930 + AT_rich Low_complexity Low_complexity 1 29 0 2249 71 0 3 chr1 1001508 1001805 -241662548 - AluY SINE Alu -11 300 5 1825 132 14 7 chr1 1002517 1002813 -241661540 + AluSx SINE Alu 1 298 -14 624 100 100 20 chr1 1002941 1003041 -241661312 - AluSg/x SINE Alu -22 290 183 823 178 92 12 chr1 1003373 1003536 -241660817 + AluJb SINE Alu 136 311 -1 2387 65 7 0 chr1 1004124 1004431 -241659922 - AluY SINE Alu -2 309 1 2090 59 3 56 chr1 1004770 1005094 -241659259 + AluY SINE Alu 1 307 -4 647 241 0 0 chr1 1005101 1005234 -241659119 + FLAM_C SINE Alu 1 133 0 308 159 55 131 chr1 1005234 1005271 -241659082 - Charlie5 DNA MER1_type -81 2543 2505 1312 162 170 4 chr1 1005271 1005530 -241658823 - AluJb SINE Alu 0 302 1 308 159 55 131 chr1 1005530 1005637 -241658716 - Charlie5 DNA MER1_type -119 2505 2410 2091 124 0 3 chr1 1007005 1007311 -241657042 - AluSx SINE Alu -7 305 1 1637 172 0 25 chr1 1007543 1007863 -241656490 + AluJb SINE Alu 1 312 0 2002 102 7 10 chr1 1007865 1008160 -241656193 + AluSx SINE Alu 1 294 -18 990 112 0 71 chr1 1008011 1008181 -241656172 + AluSg/x SINE Alu 147 304 -6 2483 93 0 0 chr1 1008493 1008805 -241655548 - AluSx SINE Alu 0 312 1 937 102 31 0 chr1 1008822 1008950 -241655403 - AluJo SINE Alu -176 136 5 216 0 0 0 chr1 1009056 1009080 -241655273 + (T)n Simple_repeat Simple_repeat 1 24 0 2288 226 46 20 chr1 1009873 1010457 -241653896 + L1MB5 LINE L1 5576 6174 0 2257 80 3 11 chr1 1010466 1010753 -241653600 + AluSx SINE Alu 28 312 0 242 199 117 0 chr1 1011914 1011988 -241652365 + MIR SINE MIR 45 128 -80 2397 90 3 3 chr1 1012245 1012556 -241651797 - AluY SINE Alu 0 311 1 1706 173 20 10 chr1 1012559 1012860 -241651493 - AluJo SINE Alu 0 312 9 1045 220 107 0 chr1 1013272 1013563 -241650790 + L1MA7 LINE L1 5958 6279 -12 1616 204 0 25 chr1 1013596 1013910 -241650443 + AluJo SINE Alu 3 308 -4 25 31 0 0 chr1 1013937 1013969 -241650384 + AT_rich Low_complexity Low_complexity 1 32 0 1545 126 165 11 chr1 1013974 1014235 -241650118 + AluSx SINE Alu 1 301 -11 282 56 0 0 chr1 1014955 1014991 -241649362 + (TG)n Simple_repeat Simple_repeat 2 37 0 1110 75 43 0 chr1 1015032 1015193 -241649160 - L1PA6 LINE L1 -1 6153 5986 2539 56 0 13 chr1 1015298 1015601 -241648752 - AluY SINE Alu -12 299 1 2341 83 7 7 chr1 1015672 1015972 -241648381 - AluY SINE Alu -11 300 1 2273 121 0 7 chr1 1016476 1016781 -241647572 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr1 1016781 1016804 -241647549 + (TA)n Simple_repeat Simple_repeat 1 23 0 313 175 0 0 chr1 1016818 1016875 -241647478 + Alu SINE Alu 240 296 -4 2300 125 0 0 chr1 1016896 1017201 -241647152 + AluSx SINE Alu 1 305 -7 1830 142 0 86 chr1 1017305 1017499 -241646854 - AluJo SINE Alu -7 305 149 2215 76 40 0 chr1 1017499 1017775 -241646578 + AluY SINE Alu 1 287 -24 1830 142 0 86 chr1 1017775 1017905 -241646448 - AluJo SINE Alu -163 149 9 182 310 28 42 chr1 1018199 1018270 -241646083 + L3b LINE CR1 1479 1548 -35 1582 119 169 4 chr1 1018413 1018674 -241645679 + AluSx SINE Alu 1 304 -8 2180 112 0 0 chr1 1018925 1019235 -241645118 + AluSx SINE Alu 6 315 0 2173 105 14 7 chr1 1019558 1019853 -241644500 + AluSp SINE Alu 1 297 -16 2521 71 0 7 chr1 1019855 1020165 -241644188 + AluY SINE Alu 1 308 -3 1886 136 20 33 chr1 1020370 1020671 -241643682 - AluSg SINE Alu 0 310 14 2216 141 0 0 chr1 1020867 1021172 -241643181 - AluSx SINE Alu -7 305 1 2366 92 0 3 chr1 1022022 1022316 -241642037 + AluSq SINE Alu 1 293 -20 2142 110 3 10 chr1 1022387 1022687 -241641666 - AluSq SINE Alu -15 298 1 2315 101 0 7 chr1 1022689 1022986 -241641367 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 1023533 1023554 -241640799 + AT_rich Low_complexity Low_complexity 1 21 0 2406 67 0 20 chr1 1023554 1023852 -241640501 - AluY SINE Alu -19 292 1 2319 123 0 0 chr1 1023852 1024162 -241640191 - AluSg SINE Alu 0 310 1 1377 193 64 0 chr1 1024283 1024547 -241639806 + AluJo SINE Alu 2 282 -30 400 91 0 0 chr1 1024875 1024930 -241639423 - Alu SINE Alu -253 56 2 2315 101 0 7 chr1 1024933 1025230 -241639123 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1 1025777 1025798 -241638555 + AT_rich Low_complexity Low_complexity 1 21 0 2406 67 0 20 chr1 1025798 1026096 -241638257 - AluY SINE Alu -19 292 1 2412 107 0 3 chr1 1026096 1026406 -241637947 - AluSc SINE Alu 0 309 1 2027 95 64 18 chr1 1026902 1027185 -241637168 + AluSx SINE Alu 1 296 -16 1002 201 14 14 chr1 1027404 1027623 -241636730 + MER47A DNA MER2_type 28 246 -120 181 250 0 23 chr1 1027777 1027821 -241636532 + MIR SINE MIR 13 55 -207 261 248 122 40 chr1 1028596 1028714 -241635639 + L1MC/D LINE L1 5688 5810 -311 2160 113 7 0 chr1 1028864 1029155 -241635198 - AluSx SINE Alu -19 293 1 1344 143 10 0 chr1 1030130 1030333 -241634020 - AluSq SINE Alu -22 291 87 2532 41 7 3 chr1 1030344 1030638 -241633715 - AluY SINE Alu -16 295 1 1189 276 111 54 chr1 1031024 1032184 -241632169 + L1ME LINE L1 47 1269 -4811 516 330 44 66 chr1 1032201 1032452 -241631901 + L1ME LINE L1 1442 1697 -4564 2135 122 10 7 chr1 1032452 1032746 -241631607 - AluSx SINE Alu -17 295 1 516 330 44 66 chr1 1032746 1033084 -241631269 + L1ME LINE L1 1697 2018 -4243 1144 242 129 27 chr1 1033321 1033904 -241630449 + L1ME LINE L1 2253 2894 -3186 1640 103 23 0 chr1 1033904 1034118 -241630235 + AluSx SINE Alu 1 219 -93 414 200 61 17 chr1 1034331 1034446 -241629907 - L1ME LINE L1 -4700 1561 1442 1197 276 111 45 chr1 1034463 1035624 -241628729 - L1ME LINE L1 -4811 1269 47 2215 84 10 14 chr1 1036010 1036307 -241628046 + AluSx SINE Alu 1 296 -16 1344 143 10 0 chr1 1036318 1036521 -241627832 + AluSq SINE Alu 87 291 -22 2160 113 7 0 chr1 1037496 1037787 -241626566 + AluSx SINE Alu 1 293 -19 261 248 122 40 chr1 1037937 1038055 -241626298 - L1MC/D LINE L1 -311 5810 5688 181 250 0 23 chr1 1038830 1038874 -241625479 - MIR SINE MIR -207 55 13 1002 201 14 14 chr1 1039028 1039247 -241625106 - MER47A DNA MER2_type -120 246 28 2027 95 64 18 chr1 1039466 1039749 -241624604 - AluSx SINE Alu -16 296 1 2337 92 3 0 chr1 1040245 1040529 -241623824 + AluSc SINE Alu 1 285 -24 717 92 64 0 chr1 1040906 1041015 -241623338 - AluSq SINE Alu -101 212 97 2185 122 7 0 chr1 1042155 1042449 -241621904 - AluSq SINE Alu -17 296 1 2189 121 0 7 chr1 1042511 1042817 -241621536 - AluSc SINE Alu -5 304 1 2622 50 0 10 chr1 1043758 1044060 -241620293 + AluSp SINE Alu 1 299 -14 2356 86 3 10 chr1 1045521 1045822 -241618531 - AluSp SINE Alu -14 299 1 2148 127 3 0 chr1 1047180 1047480 -241616873 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1049460 1049496 -241614857 + GA-rich Low_complexity Low_complexity 5 41 0 1261 98 11 6 chr1 1050493 1050667 -241613686 + AluY SINE Alu 122 296 -15 1226 124 0 0 chr1 1050704 1050873 -241613480 - AluSg/x SINE Alu -10 302 134 2403 79 7 7 chr1 1050873 1051177 -241613176 - AluSq SINE Alu -9 304 1 2257 82 14 0 chr1 1051192 1051485 -241612868 - AluY SINE Alu -14 297 1 23 0 0 0 chr1 1051963 1051986 -241612367 + AT_rich Low_complexity Low_complexity 1 23 0 376 219 42 0 chr1 1053079 1053175 -241611178 + MIR SINE MIR 60 159 -103 2127 103 11 4 chr1 1053182 1053463 -241610890 + AluSx SINE Alu 1 283 -29 189 292 14 0 chr1 1053529 1053601 -241610752 + L2 LINE L2 2893 2965 -349 201 240 135 21 chr1 1053667 1053763 -241610590 + L2 LINE L2 3167 3273 -40 256 209 121 0 chr1 1054192 1054283 -241610070 - MER69 DNA AcHobo -3 2523 2422 1405 181 59 28 chr1 1055438 1055540 -241608813 + AluJb SINE Alu 1 98 -214 225 0 0 0 chr1 1055540 1055565 -241608788 + (CA)n Simple_repeat Simple_repeat 2 26 0 1405 181 59 28 chr1 1055565 1055750 -241608603 + AluJb SINE Alu 98 297 -15 232 274 8 43 chr1 1056557 1056674 -241607679 + C-rich Low_complexity Low_complexity 6 118 0 233 217 28 38 chr1 1056789 1056895 -241607458 + (CGG)n Simple_repeat Simple_repeat 1 105 0 1572 204 0 4 chr1 1058152 1058427 -241605926 - AluJo SINE Alu -27 285 12 2442 75 3 0 chr1 1058438 1058731 -241605622 - AluSg SINE Alu -8 302 9 344 300 10 46 chr1 1059881 1060058 -241604295 - L1MC/D LINE L1 -2443 5365 5263 2147 97 0 10 chr1 1060108 1060407 -241603946 - AluSg SINE Alu -14 296 1 283 119 25 4 chr1 1060543 1060612 -241603741 + Alu SINE Alu 1 53 -250 289 77 19 0 chr1 1060619 1060671 -241603682 + Alu SINE Alu 1 53 -250 2038 81 6 78 chr1 1060679 1060999 -241603354 + AluSp SINE Alu 1 297 -16 342 341 65 22 chr1 1061007 1061145 -241603208 - L1MCa LINE L1 -4334 2092 1949 1487 204 48 0 chr1 1061198 1061467 -241602886 + AluJo SINE Alu 1 282 -30 486 0 0 0 chr1 1061502 1061556 -241602797 + (CA)n Simple_repeat Simple_repeat 1 54 0 819 151 0 22 chr1 1061625 1061764 -241602589 - AluJo SINE Alu -176 136 1 593 135 69 129 chr1 1061767 1061792 -241602561 - L1MD3 LINE L1 -7 7988 7963 2219 100 0 3 chr1 1061792 1062092 -241602261 + AluSq SINE Alu 1 299 -14 593 135 69 129 chr1 1062092 1062172 -241602181 - L1MD3 LINE L1 -32 7963 7880 2356 76 0 3 chr1 1062172 1062475 -241601878 - AluSp SINE Alu -11 302 1 593 135 69 129 chr1 1062475 1062654 -241601699 - L1MD3 LINE L1 -115 7880 6069 666 102 0 0 chr1 1062654 1062742 -241601611 - AluJ/FLAM SINE Alu -224 88 1 2077 230 56 112 chr1 1062745 1062769 -241601584 - L1MC/D LINE L1 -1016 5130 5106 1735 191 3 3 chr1 1062769 1063072 -241601281 + AluJb SINE Alu 1 303 -9 2077 230 56 112 chr1 1063072 1063124 -241601229 - L1MC/D LINE L1 -1040 5106 5053 1939 147 3 7 chr1 1063124 1063430 -241600923 + AluJb SINE Alu 1 305 -7 2077 230 56 112 chr1 1063430 1064176 -241600177 - L1MC/D LINE L1 -1093 5053 4267 1867 128 38 7 chr1 1064176 1064466 -241599887 - AluSq SINE Alu -14 299 1 1707 84 0 0 chr1 1064474 1064713 -241599640 - AluY SINE Alu 0 308 70 2077 230 56 112 chr1 1064713 1065009 -241599344 - L1MC/D LINE L1 -1886 4260 4068 1088 141 5 40 chr1 1065029 1065228 -241599125 - AluSg/x SINE Alu 0 312 121 315 0 0 0 chr1 1065228 1065263 -241599090 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 1135 143 6 6 chr1 1065263 1065438 -241598915 - AluSx SINE Alu -137 175 1 2055 139 10 0 chr1 1065475 1065654 -241598699 - AluSx SINE Alu 0 312 127 2191 102 0 13 chr1 1065654 1065968 -241598385 - AluSx SINE Alu -2 310 1 2055 139 10 0 chr1 1065968 1066097 -241598256 - AluSx SINE Alu -185 127 1 516 296 31 6 chr1 1066144 1066306 -241598047 - MER5B DNA MER1_type -9 169 4 744 233 42 108 chr1 1066415 1066666 -241597687 - MLT1B LTR MaLR 0 626 360 1413 180 19 64 chr1 1066666 1066977 -241597376 - AluJo SINE Alu -15 297 1 744 233 42 108 chr1 1066977 1067038 -241597315 - MLT1B LTR MaLR -266 360 297 2261 93 7 0 chr1 1067038 1067338 -241597015 - AluSq SINE Alu -7 306 5 744 233 42 108 chr1 1067338 1067417 -241596936 - MLT1B LTR MaLR -329 297 22 854 167 0 0 chr1 1067420 1067552 -241596801 + FLAM_C SINE Alu 2 133 0 2139 111 0 7 chr1 1068016 1068313 -241596040 + AluSx SINE Alu 1 295 -17 1113 168 0 25 chr1 1068323 1068520 -241595833 + AluJo SINE Alu 1 192 -120 189 171 0 0 chr1 1068529 1068564 -241595789 + A-rich Low_complexity Low_complexity 1 35 0 1938 76 4 19 chr1 1068792 1069055 -241595298 - AluSp SINE Alu 0 313 55 823 153 56 7 chr1 1069103 1069247 -241595106 - AluJb SINE Alu -161 151 1 1957 116 25 18 chr1 1069318 1069603 -241594750 - AluSq SINE Alu -26 287 1 29 47 0 0 chr1 1069742 1069785 -241594568 + AT_rich Low_complexity Low_complexity 1 43 0 2200 90 3 0 chr1 1070324 1070613 -241593740 - AluSx SINE Alu -22 290 1 2385 90 0 0 chr1 1071586 1071896 -241592457 - AluSx SINE Alu -2 310 1 1051 60 8 8 chr1 1071896 1072030 -241592323 - AluY SINE Alu -177 134 1 321 26 0 0 chr1 1072435 1072473 -241591880 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1925 136 0 3 chr1 1072473 1072759 -241591594 - AluSq SINE Alu -28 285 1 1571 181 14 10 chr1 1073807 1073942 -241590411 + AluJb SINE Alu 1 134 -178 2133 105 0 3 chr1 1073942 1074237 -241590116 + AluSg1 SINE Alu 1 294 -15 1571 181 14 10 chr1 1074237 1074393 -241589960 + AluJb SINE Alu 134 293 -19 410 264 86 0 chr1 1078205 1078345 -241586008 - MSTD LTR MaLR 0 396 245 324 296 50 0 chr1 1078382 1078524 -241585829 - MSTC LTR MaLR -243 153 6 2304 75 3 3 chr1 1080114 1080409 -241583944 + AluSc SINE Alu 1 295 -14 252 0 0 0 chr1 1082296 1082324 -241582029 + (GGA)n Simple_repeat Simple_repeat 2 29 0 203 188 21 0 chr1 1085562 1085610 -241578743 + (CA)n Simple_repeat Simple_repeat 2 50 0 218 132 19 0 chr1 1085648 1085701 -241578652 + (CA)n Simple_repeat Simple_repeat 1 54 0 358 314 128 16 chr1 1086649 1086837 -241577516 + L1ME LINE L1 5265 5473 -648 554 216 204 55 chr1 1086841 1087096 -241577257 + AluJo SINE Alu 5 297 -5 2229 84 0 7 chr1 1087144 1087440 -241576913 + AluY SINE Alu 1 294 -17 2126 105 0 10 chr1 1087440 1087735 -241576618 + AluSg SINE Alu 1 292 -18 2201 77 10 16 chr1 1087963 1088273 -241576080 - AluSg SINE Alu -2 308 1 26 0 0 0 chr1 1088508 1088534 -241575819 + GC_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1 1089037 1089057 -241575296 + (A)n Simple_repeat Simple_repeat 1 20 0 200 136 0 68 chr1 1089788 1089847 -241574506 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 862 270 79 41 chr1 1090599 1091018 -241573335 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1091070 1091173 -241573180 + AluSp/q SINE Alu 193 295 -18 503 219 164 0 chr1 1091174 1091195 -241573158 - L1M4 LINE L1 -786 5360 5344 2261 92 13 0 chr1 1091195 1091501 -241572852 - AluSx SINE Alu -2 310 1 503 219 164 0 chr1 1091501 1091625 -241572728 - L1M4 LINE L1 -802 5344 5191 216 158 0 0 chr1 1091629 1091667 -241572686 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 2134 110 3 0 chr1 1091667 1091958 -241572395 - AluSp SINE Alu -9 304 13 2172 122 0 0 chr1 1091967 1092261 -241572092 - AluSx SINE Alu -18 294 1 185 277 0 0 chr1 1092454 1092501 -241571852 + MIR SINE MIR 40 86 -176 1873 133 34 0 chr1 1092779 1093072 -241571281 - AluSx SINE Alu -9 303 1 2269 82 0 22 chr1 1093084 1093401 -241570952 - AluY SINE Alu -1 310 1 2001 118 17 0 chr1 1093678 1093966 -241570387 - AluSg SINE Alu -17 293 1 186 43 0 0 chr1 1093971 1093994 -241570359 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 288 272 22 11 chr1 1094018 1094110 -241570243 - L1MC4a LINE L1 -1280 6528 6436 1151 103 23 23 chr1 1094134 1094150 -241570203 + AluSg/x SINE Alu 121 136 -176 2033 118 10 3 chr1 1094150 1094455 -241569898 + AluSp SINE Alu 1 307 -6 1151 103 23 23 chr1 1094455 1094612 -241569741 + AluSg/x SINE Alu 135 294 -18 2193 85 0 3 chr1 1094612 1094907 -241569446 + AluY SINE Alu 1 294 -17 2247 103 0 0 chr1 1095127 1095429 -241568924 - AluSx SINE Alu -10 302 1 1254 149 0 0 chr1 1097730 1097925 -241566428 - AluJb SINE Alu 0 312 118 2069 121 6 6 chr1 1098401 1098714 -241565639 - AluSq SINE Alu 0 313 1 2327 79 0 3 chr1 1098714 1099017 -241565336 - AluY SINE Alu -9 302 1 2123 113 0 0 chr1 1099018 1099309 -241565044 - AluSg SINE Alu -19 291 1 868 157 0 7 chr1 1099462 1099609 -241564744 - AluJo SINE Alu -166 146 1 304 323 8 40 chr1 1099718 1099842 -241564511 + L1ME LINE L1 6 125 -5945 1324 136 5 0 chr1 1099890 1100088 -241564265 - AluSq SINE Alu -35 278 80 301 125 54 11 chr1 1100096 1100186 -241564167 - L1P5 LINE L1 -710 5441 5346 2129 125 3 0 chr1 1100718 1101029 -241563324 + AluSq SINE Alu 1 312 -1 494 312 24 0 chr1 1101165 1101335 -241563018 + MER3 DNA MER1_type 22 195 -14 2397 64 0 10 chr1 1101423 1101735 -241562618 - AluY SINE Alu -2 309 1 2143 101 0 3 chr1 1101741 1102037 -241562316 - AluSx SINE Alu -17 295 1 1613 147 8 4 chr1 1102077 1102342 -241562011 + AluSx SINE Alu 42 307 -5 1631 159 3 75 chr1 1102976 1103296 -241561057 - AluSx SINE Alu -15 297 1 2244 96 3 0 chr1 1103299 1103602 -241560751 - AluSx SINE Alu 0 312 9 2080 120 0 13 chr1 1103829 1104137 -241560216 - AluY SINE Alu -7 304 1 234 119 24 0 chr1 1104137 1104179 -241560174 - Alu SINE Alu -258 44 2 * 300 127 16 16 chr1 1104179 1104224 -241560129 - AluJ/FLAM SINE Alu -257 45 1 229 183 33 0 chr1 1104238 1104298 -241560055 - AluJ/FLAM SINE Alu -240 62 1 1483 170 50 14 chr1 1105129 1105411 -241558942 - AluJo SINE Alu -17 295 4 2072 125 0 0 chr1 1105554 1105843 -241558510 + AluSg SINE Alu 1 289 -21 311 284 50 14 chr1 1107953 1108094 -241556259 - MER65A LTR ERV1 -299 146 1 2007 132 10 0 chr1 1108119 1108414 -241555939 + AluSx SINE Alu 1 298 -14 1894 133 0 7 chr1 1108414 1108700 -241555653 + AluY SINE Alu 6 289 -22 1764 84 54 64 chr1 1108701 1108999 -241555354 + AluY SINE Alu 1 295 -16 2278 67 0 26 chr1 1109000 1109312 -241555041 + AluY SINE Alu 1 304 -7 2134 74 0 65 chr1 1109369 1109694 -241554659 + AluY SINE Alu 1 304 -7 2133 117 10 0 chr1 1110074 1110383 -241553970 + AluSx SINE Alu 1 312 0 357 332 109 10 chr1 1111357 1111559 -241552794 - MIR SINE MIR -21 241 20 658 164 94 0 chr1 1111562 1111690 -241552663 - FAM SINE Alu -45 140 1 1736 98 55 4 chr1 1111714 1111968 -241552385 - AluSg SINE Alu 0 310 44 1677 171 7 20 chr1 1111978 1112282 -241552071 - AluJb SINE Alu -11 301 2 519 147 198 0 chr1 1112991 1113107 -241551246 + Tigger1 DNA MER2_type 1 139 -2279 286 70 0 0 chr1 1113111 1113154 -241551199 - AluY SINE Alu -5 295 253 1516 110 0 5 chr1 1113155 1113364 -241550989 - AluY SINE Alu -103 208 1 213 309 12 48 chr1 1113518 1113602 -241550751 - L2 LINE L2 -2760 554 474 1218 131 159 36 chr1 1114022 1114274 -241550079 - AluY SINE Alu -17 294 12 1219 168 0 0 chr1 1114340 1114536 -241549817 + AluSg/x SINE Alu 98 293 -17 2141 102 0 17 chr1 1114538 1114832 -241549521 + AluSg SINE Alu 3 291 -19 2149 76 0 17 chr1 1114836 1115164 -241549189 + AluY SINE Alu 1 323 0 2287 80 3 3 chr1 1115318 1115619 -241548734 + AluY SINE Alu 1 301 -10 2396 60 0 7 chr1 1116297 1116597 -241547756 + AluY SINE Alu 1 298 -13 905 126 0 15 chr1 1118177 1118312 -241546041 + AluJo SINE Alu 1 133 -169 2459 70 0 3 chr1 1118388 1118701 -241545652 - AluSx SINE Alu 0 312 1 856 194 26 0 chr1 1119144 1119299 -241545054 + AluJo SINE Alu 137 295 -7 317 181 169 0 chr1 1119959 1120042 -241544311 + FLAM_A SINE Alu 33 129 -4 296 261 70 14 chr1 1120732 1120874 -241543479 + L1M4b LINE L1 779 928 -5356 * 1434 281 108 9 chr1 1120871 1121597 -241542756 + L1M4b LINE L1 1140 2035 -4347 302 286 181 4 chr1 1121677 1121936 -241542417 + L1M4b LINE L1 2173 2515 -3905 344 285 47 17 chr1 1122008 1122026 -241542327 + L1M4b LINE L1 2603 2619 -3763 1578 137 0 0 chr1 1122026 1122260 -241542093 + AluSg/x SINE Alu 76 309 -1 344 285 47 17 chr1 1122260 1122413 -241541940 + L1M4b LINE L1 2619 2779 -3603 2152 92 0 13 chr1 1122417 1122731 -241541622 + AluSg SINE Alu 1 310 0 2012 117 0 10 chr1 1123086 1123386 -241540967 - AluY SINE Alu -14 297 1 1065 189 4 25 chr1 1123386 1123630 -241540723 - L1M4c LINE L1 -4542 1842 1604 1409 152 28 24 chr1 1123631 1123881 -241540472 - AluJo SINE Alu -12 300 50 4167 199 130 29 chr1 1123882 1125330 -241539023 - L1M4c LINE L1 -4774 1610 17 448 141 10 10 chr1 1126300 1126399 -241537954 + GA-rich Low_complexity Low_complexity 2 100 0 2346 86 0 0 chr1 1126572 1126874 -241537479 - AluSx SINE Alu -10 302 1 1746 148 7 30 chr1 1128675 1128860 -241535493 - AluJo SINE Alu -21 291 114 2295 77 3 10 chr1 1128860 1129160 -241535193 + AluSg SINE Alu 1 298 -12 1746 148 7 30 chr1 1129160 1129272 -241535081 - AluJo SINE Alu -198 114 1 35 24 0 0 chr1 1134909 1134951 -241529402 + GC_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr1 1135113 1135147 -241529206 + GC_rich Low_complexity Low_complexity 1 34 0 376 224 24 8 chr1 1138185 1138310 -241526043 + (CA)n Simple_repeat Simple_repeat 2 128 0 236 127 18 0 chr1 1138350 1138405 -241525948 + (CA)n Simple_repeat Simple_repeat 1 56 0 346 325 101 34 chr1 1138782 1139068 -241525285 + L1ME LINE L1 757 5407 -648 357 146 0 0 chr1 1139072 1139144 -241525209 + AluJ/FLAM SINE Alu 5 59 -243 547 172 82 16 chr1 1139205 1139327 -241525026 + FLAM_A SINE Alu 1 130 -3 2229 84 0 7 chr1 1139375 1139671 -241524682 + AluY SINE Alu 1 294 -17 2145 99 0 10 chr1 1139671 1139964 -241524389 + AluSg SINE Alu 1 290 -20 2278 87 6 13 chr1 1140197 1140508 -241523845 - AluSc SINE Alu 0 309 1 1015 166 6 6 chr1 1140525 1140688 -241523665 - FRAM SINE Alu 0 166 4 1875 114 0 28 chr1 1140916 1141229 -241523124 - AluSx SINE Alu 0 305 1 2151 80 3 17 chr1 1141237 1141539 -241522814 - AluSg SINE Alu -12 298 1 26 0 0 0 chr1 1141774 1141800 -241522553 + GC_rich Low_complexity Low_complexity 1 26 0 200 136 0 68 chr1 1143063 1143122 -241521231 + (CAAAA)n Simple_repeat Simple_repeat 2 56 0 851 272 79 41 chr1 1143874 1144293 -241520060 + MLT1F1 LTR MaLR 125 559 -8 718 126 0 0 chr1 1144345 1144448 -241519905 + AluSp/q SINE Alu 193 295 -18 2239 95 13 0 chr1 1144470 1144776 -241519577 - AluSx SINE Alu -2 310 1 280 232 50 144 chr1 1144778 1144924 -241519429 - L1M4 LINE L1 -822 5324 5166 2131 108 7 0 chr1 1144924 1145221 -241519132 - AluSp SINE Alu -2 311 13 2251 107 0 0 chr1 1145230 1145528 -241518825 - AluSx SINE Alu -14 298 1 280 232 50 144 chr1 1145528 1145711 -241518642 - L1M4 LINE L1 -988 5158 5017 257 337 232 6 chr1 1145721 1145902 -241518451 + MIR SINE MIR 40 261 -1 2022 118 7 3 chr1 1146046 1146343 -241518010 - AluY SINE Alu -13 298 1 280 269 57 80 chr1 1146546 1146617 -241517736 - L1MC4a LINE L1 -571 7237 7166 1920 132 17 0 chr1 1146617 1146905 -241517448 - AluSg SINE Alu -17 293 1 280 269 57 80 chr1 1146905 1147008 -241517345 - L1MC4a LINE L1 -642 7166 7067 1946 146 10 0 chr1 1147117 1147238 -241517115 + AluSx SINE Alu 9 127 -185 2191 102 0 13 chr1 1147238 1147552 -241516801 + AluSx SINE Alu 1 310 -2 1946 146 10 0 chr1 1147552 1147731 -241516622 + AluSx SINE Alu 127 312 0 1135 143 6 6 chr1 1147768 1147943 -241516410 + AluSx SINE Alu 1 175 -137 315 0 0 0 chr1 1147943 1147978 -241516375 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 1088 141 5 40 chr1 1147978 1148177 -241516176 + AluSg/x SINE Alu 119 310 0 2077 230 56 112 chr1 1148197 1148493 -241515860 + L1M4 LINE L1 4068 4379 -1767 1708 84 0 0 chr1 1148493 1148732 -241515621 + AluY SINE Alu 70 308 0 1867 128 38 7 chr1 1148740 1149030 -241515323 + AluSq SINE Alu 1 299 -14 2077 230 56 112 chr1 1149030 1149776 -241514577 + L1M4 LINE L1 4386 5172 -974 1939 147 3 7 chr1 1149776 1150082 -241514271 - AluJb SINE Alu -7 305 1 2077 230 56 112 chr1 1150082 1150134 -241514219 + L1M4 LINE L1 5172 5107 -1039 1735 191 3 3 chr1 1150134 1150437 -241513916 - AluJb SINE Alu -9 303 1 2077 230 56 112 chr1 1150437 1150461 -241513892 + L1M4 LINE L1 5106 5130 -1016 666 102 0 0 chr1 1150464 1150552 -241513801 + AluJ/FLAM SINE Alu 1 88 -224 532 145 81 128 chr1 1150552 1150731 -241513622 + L1MD3 LINE L1 6069 6255 -1711 2356 76 0 3 chr1 1150731 1151034 -241513319 + AluSp SINE Alu 1 302 -11 532 145 81 128 chr1 1151034 1151114 -241513239 + L1MD3 LINE L1 6255 6337 -1629 2232 97 0 3 chr1 1151114 1151414 -241512939 - AluSq SINE Alu -14 299 1 532 145 81 128 chr1 1151414 1151450 -241512903 + L1MD3 LINE L1 6337 7959 -7 2089 121 0 7 chr1 1151476 1151782 -241512571 - AluSc SINE Alu -5 304 1 2491 50 0 10 chr1 1152723 1153025 -241511328 + AluSp SINE Alu 1 299 -14 2244 86 3 10 chr1 1154486 1154787 -241509566 - AluSp SINE Alu -14 299 1 2054 127 3 0 chr1 1156145 1156445 -241507908 - AluSg SINE Alu -6 304 4 204 139 28 0 chr1 1158425 1158461 -241505892 + GA-rich Low_complexity Low_complexity 5 41 0 1100 105 12 6 chr1 1159458 1159620 -241504733 + AluY SINE Alu 122 284 -27 193 253 0 80 chr1 1361306 1361381 -241302972 + L2 LINE L2 525 593 -2721 817 248 8 29 chr1 1366040 1366278 -241298075 + AluSq SINE Alu 4 236 -77 231 302 113 0 chr1 1369702 1369808 -241294545 + MER58C DNA MER1_type 77 194 -21 216 268 61 12 chr1 1372903 1372985 -241291368 - L2 LINE L2 -50 3222 3137 1432 288 31 6 chr1 1375445 1375924 -241288429 + L1MB5 LINE L1 5684 6174 0 2168 115 0 6 chr1 1375957 1376270 -241288083 + AluSq SINE Alu 1 311 -2 180 125 0 0 chr1 1378262 1378294 -241286059 + (TCCCC)n Simple_repeat Simple_repeat 3 34 0 531 251 4 92 chr1 1381901 1382140 -241282213 - L1MA10 LINE L1 0 6334 6117 309 250 0 43 chr1 1385721 1385885 -241278468 + (GGGTG)n Simple_repeat Simple_repeat 3 159 0 211 274 32 0 chr1 1386404 1386466 -241277887 + MER5B DNA MER1_type 1 64 -114 392 331 162 0 chr1 1387464 1387618 -241276735 - MER5A DNA MER1_type -6 183 5 280 358 54 18 chr1 1394475 1394696 -241269657 + MIR SINE MIR 22 250 -12 1651 148 8 4 chr1 1395328 1395584 -241268769 + AluJo SINE Alu 3 259 -53 463 169 19 32 chr1 1395605 1395759 -241268594 + GA-rich Low_complexity Low_complexity 5 156 0 1589 144 95 3 chr1 1395768 1396053 -241268300 + AluJo SINE Alu 1 311 -1 231 88 0 0 chr1 1399785 1399819 -241264534 + (GGGA)n Simple_repeat Simple_repeat 2 35 0 247 306 0 12 chr1 1402870 1402955 -241261398 + (CA)n Simple_repeat Simple_repeat 1 84 0 498 280 0 4 chr1 1405243 1405475 -241258878 + (TG)n Simple_repeat Simple_repeat 1 230 0 239 239 182 0 chr1 1407431 1407519 -241256834 - L2 LINE L2 -5 3267 3164 201 248 272 8 chr1 1408778 1408903 -241255450 - MER5A DNA MER1_type 0 189 32 255 289 100 0 chr1 1410181 1410271 -241254082 + MIR SINE MIR 94 192 -70 226 286 26 0 chr1 1410848 1410925 -241253428 + L2 LINE L2 2896 2974 -339 973 278 58 8 chr1 1414330 1414693 -241249660 + MLT1C LTR MaLR 11 391 -76 324 274 62 18 chr1 1415295 1415408 -241248945 - MIR3 SINE MIR -10 198 81 413 146 10 29 chr1 1417174 1417277 -241247076 + CT-rich Low_complexity Low_complexity 2 102 0 2502 56 0 0 chr1 1417545 1417850 -241246503 + AluY SINE Alu 1 305 -6 307 216 15 0 chr1 1420896 1420981 -241243372 + L1MB5 LINE L1 5688 5773 -393 433 283 114 4 chr1 1421164 1421401 -241242952 + L1MB5 LINE L1 5880 6142 -32 210 357 0 0 chr1 1425118 1425258 -241239095 + (TG)n Simple_repeat Simple_repeat 2 141 0 192 210 32 16 chr1 1425311 1425373 -241238980 + L2 LINE L2 2907 2969 -303 213 24 98 0 chr1 1425945 1425986 -241238367 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 257 309 79 8 chr1 1426717 1426843 -241237510 - MIR3 SINE MIR -63 145 11 270 357 7 7 chr1 1433272 1433412 -241230941 + (TG)n Simple_repeat Simple_repeat 1 140 0 195 276 0 0 chr1 1433441 1433517 -241230836 + (TG)n Simple_repeat Simple_repeat 1 76 0 279 325 16 8 chr1 1433542 1433665 -241230688 + (TG)n Simple_repeat Simple_repeat 1 124 0 276 30 0 0 chr1 1433686 1433719 -241230634 + (TG)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr1 1433841 1433865 -241230488 + (A)n Simple_repeat Simple_repeat 1 24 0 2426 247 61 7 chr1 1438381 1439089 -241225264 + L1MB7 LINE L1 5427 6172 -12 1421 285 42 0 chr1 1439170 1439577 -241224776 - MER82 DNA MER2_type 0 653 230 476 182 17 149 chr1 1439589 1439770 -241224583 + Tigger1 DNA MER2_type 1 157 -2261 * 647 207 173 0 chr1 1439768 1439947 -241224406 + Tigger1 DNA MER2_type 2209 2418 0 * 808 245 15 15 chr1 1439947 1440145 -241224208 - MER82 DNA MER2_type -455 198 1 1925 172 0 6 chr1 1440797 1441111 -241223242 - AluJo SINE Alu 0 312 1 2106 130 7 0 chr1 1443843 1444144 -241220209 + AluSx SINE Alu 1 303 -9 1541 189 7 0 chr1 1444337 1444633 -241219720 + MER47A DNA MER2_type 69 366 0 249 289 45 77 chr1 1449572 1449728 -241214625 - MIR3 SINE MIR -37 171 21 22 0 0 0 chr1 1450388 1450410 -241213943 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr1 1451481 1451525 -241212828 + (CA)n Simple_repeat Simple_repeat 1 44 0 251 243 0 58 chr1 1452513 1452616 -241211737 + GA-rich Low_complexity Low_complexity 2 98 0 760 41 0 0 chr1 1453856 1453953 -241210400 + AluSc SINE Alu 212 308 -1 298 374 6 18 chr1 1455204 1455367 -241208986 + (TG)n Simple_repeat Simple_repeat 2 162 0 244 259 84 69 chr1 1455680 1455811 -241208542 - MIR3 SINE MIR -45 163 31 186 43 0 0 chr1 1461349 1461372 -241202981 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 1675 140 0 0 chr1 1462801 1463037 -241201316 - AluSx SINE Alu -76 236 1 227 345 18 0 chr1 1465507 1465617 -241198736 + (CACG)n Simple_repeat Simple_repeat 1 112 0 381 228 0 102 chr1 1466344 1466541 -241197812 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 243 262 19 56 chr1 1466554 1466711 -241197642 + (TGAA)n Simple_repeat Simple_repeat 1 151 0 2184 117 3 0 chr1 1468713 1469021 -241195332 - AluSg SINE Alu -1 309 1 253 411 47 0 chr1 1469299 1469466 -241194887 - MIR SINE MIR -37 225 44 474 165 124 0 chr1 1472195 1472292 -241192061 + MIR SINE MIR 36 144 -118 348 337 29 38 chr1 1473261 1473499 -241190854 - MIR SINE MIR -14 248 20 338 177 0 31 chr1 1473553 1473649 -241190704 + (CAT)n Simple_repeat Simple_repeat 3 95 0 1080 130 11 6 chr1 1473670 1474023 -241190330 + (CACCAT)n Simple_repeat Simple_repeat 1 356 0 258 231 0 0 chr1 1474051 1474142 -241190211 + (CAT)n Simple_repeat Simple_repeat 2 92 0 385 319 36 22 chr1 1474174 1474312 -241190041 - MIR SINE MIR -31 231 92 286 339 17 0 chr1 1475140 1475255 -241189098 + MIR SINE MIR 66 182 -80 293 200 0 0 chr1 1476837 1476892 -241187461 + MER2 DNA MER2_type 40 94 -251 216 97 0 0 chr1 1477017 1477048 -241187305 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 490 315 98 49 chr1 1477100 1477487 -241186866 - MLT1I LTR MaLR -3 406 1 196 279 16 49 chr1 1477599 1477660 -241186693 - MIR SINE MIR -12 250 192 2300 57 4 0 chr1 1477836 1478140 -241186213 - AluY SINE Alu 0 305 1 582 280 30 10 chr1 1478142 1478342 -241186011 - L1MC2 LINE L1 -16 6328 6125 420 326 71 10 chr1 1478354 1478550 -241185803 - L1MC2 LINE L1 -253 6091 5884 7950 28 5 3 chr1 1479422 1480471 -241183882 - L1PA3 LINE L1 -1018 5128 4078 7676 27 3 3 chr1 1480471 1481505 -241182848 + L1PA3 LINE L1 5116 6150 0 198 0 0 0 chr1 1481505 1481527 -241182826 + (TTAAA)n Simple_repeat Simple_repeat 4 25 0 201 74 0 0 chr1 1483391 1483418 -241180935 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 231 176 39 0 chr1 1485471 1485522 -241178831 + C-rich Low_complexity Low_complexity 3 55 0 184 300 67 22 chr1 1488986 1489076 -241175277 + MER5A DNA MER1_type 61 154 -35 428 337 56 22 chr1 1490261 1490439 -241173914 - MIR SINE MIR -72 190 7 565 230 11 0 chr1 1490561 1490739 -241173614 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 273 228 0 0 chr1 1490754 1490833 -241173520 + (TGGA)n Simple_repeat Simple_repeat 4 82 0 674 201 0 22 chr1 1490850 1491034 -241173319 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 925 174 7 0 chr1 1491046 1491338 -241173015 + (TGGA)n Simple_repeat Simple_repeat 1 294 0 930 159 3 0 chr1 1491473 1491791 -241172562 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 270 0 0 0 chr1 1491807 1491837 -241172516 + (GCTG)n Simple_repeat Simple_repeat 1 30 0 219 139 0 0 chr1 1491838 1491874 -241172479 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 203 275 73 55 chr1 1493253 1493362 -241170991 - MIR SINE MIR -111 151 41 1108 242 109 19 chr1 1493416 1493837 -241170516 + MLT1C LTR MaLR 9 467 0 1657 225 42 9 chr1 1494849 1495297 -241169056 - L1MB3 LINE L1 -8 6175 5713 214 204 0 0 chr1 1495548 1495592 -241168761 + MIR SINE MIR 98 141 -67 21 36 0 0 chr1 1497747 1497775 -241166578 + AT_rich Low_complexity Low_complexity 1 28 0 400 321 71 12 chr1 1498228 1498396 -241165957 - MIR SINE MIR -80 182 5 205 392 39 0 chr1 1498925 1499055 -241165298 + MIR SINE MIR 105 239 -23 326 232 32 95 chr1 1499505 1499695 -241164658 + G-rich Low_complexity Low_complexity 2 179 0 220 258 62 21 chr1 1499739 1499836 -241164517 + G-rich Low_complexity Low_complexity 2 102 0 324 252 65 26 chr1 1499857 1500012 -241164341 + G-rich Low_complexity Low_complexity 2 162 0 253 340 30 0 chr1 1500837 1500937 -241163416 + MIR SINE MIR 81 183 -79 936 275 57 8 chr1 1503921 1504292 -241160061 + MLT1C LTR MaLR 75 463 -4 312 292 35 0 chr1 1505423 1505536 -241158817 + L1MB4 LINE L1 5946 6062 -118 * 518 326 26 5 chr1 1505529 1505722 -241158631 + L1MB4 LINE L1 5978 6174 -6 477 352 28 0 chr1 1506912 1507091 -241157262 + MIR SINE MIR 50 233 -29 734 178 17 23 chr1 1507779 1507953 -241156400 + MER53 DNA DNA 13 185 -4 1864 214 26 5 chr1 1508160 1508539 -241155814 + MLT1B LTR MaLR 4 390 0 333 256 53 53 chr1 1508729 1508745 -241155608 + L1M4 LINE L1 3069 3200 -2945 2003 110 23 10 chr1 1508745 1509168 -241155185 + AluSx SINE Alu 1 427 0 53 57 0 0 chr1 1509352 1509440 -241154913 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chr1 1510372 1510392 -241153961 + (T)n Simple_repeat Simple_repeat 1 20 0 319 203 14 0 chr1 1510515 1510584 -241153769 - MER53 DNA DNA -117 72 3 999 100 0 0 chr1 1515387 1515537 -241148816 + (TGGA)n Simple_repeat Simple_repeat 4 153 0 1878 151 3 10 chr1 1517229 1517541 -241146812 - AluSx SINE Alu -2 310 1 205 325 33 0 chr1 1517589 1517663 -241146690 - MIR SINE MIR -61 147 71 183 328 76 23 chr1 1520012 1520143 -241144210 - MIR3 SINE MIR -46 162 25 462 190 27 54 chr1 1520591 1520775 -241143578 + (CA)n Simple_repeat Simple_repeat 1 179 0 210 207 29 23 chr1 1520816 1520990 -241143363 + (CA)n Simple_repeat Simple_repeat 1 175 0 437 228 47 12 chr1 1521001 1521172 -241143181 + (CA)n Simple_repeat Simple_repeat 1 177 0 350 268 48 18 chr1 1521211 1521379 -241142974 + (CA)n Simple_repeat Simple_repeat 1 173 0 2148 91 3 0 chr1 1524038 1524350 -241140003 + AluSx SINE Alu 1 313 0 319 229 135 0 chr1 1531366 1531462 -241132891 + MIR SINE MIR 35 143 -65 22 0 0 0 chr1 1536209 1536231 -241128122 + AT_rich Low_complexity Low_complexity 1 22 0 390 362 54 25 chr1 1536303 1536586 -241127767 + L1 LINE L1 4407 4697 -1449 22 0 0 0 chr1 1536995 1537017 -241127336 + AT_rich Low_complexity Low_complexity 1 22 0 224 175 16 0 chr1 1537927 1537990 -241126363 + GA-rich Low_complexity Low_complexity 1 64 0 234 128 0 0 chr1 1538335 1538374 -241125979 + (CA)n Simple_repeat Simple_repeat 1 39 0 474 228 12 20 chr1 1538414 1538769 -241125584 + (CA)n Simple_repeat Simple_repeat 1 351 0 245 105 0 0 chr1 1543273 1543311 -241121042 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 180 0 0 0 chr1 1545009 1545029 -241119324 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 205 304 0 38 chr1 1548969 1549048 -241115305 + (CACG)n Simple_repeat Simple_repeat 2 77 0 267 189 0 0 chr1 1549565 1549618 -241114735 + (TG)n Simple_repeat Simple_repeat 2 54 0 590 251 0 6 chr1 1549665 1549840 -241114513 + (CA)n Simple_repeat Simple_repeat 1 174 0 511 252 3 10 chr1 1553110 1553424 -241110929 + (TG)n Simple_repeat Simple_repeat 1 311 0 219 139 0 0 chr1 1553440 1553476 -241110877 + (CGTG)n Simple_repeat Simple_repeat 3 38 0 760 189 0 11 chr1 1553489 1553669 -241110684 + (TG)n Simple_repeat Simple_repeat 1 178 0 441 270 79 11 chr1 1554049 1554238 -241110115 + MER20 DNA MER1_type 5 206 -13 207 200 22 0 chr1 1554306 1554351 -241110002 + CT-rich Low_complexity Low_complexity 4 49 0 180 225 12 25 chr1 1556226 1556306 -241108047 + CT-rich Low_complexity Low_complexity 2 80 0 1345 110 0 88 chr1 1558687 1558698 -241105655 - AluSg/x SINE Alu 0 312 302 298 0 0 0 chr1 1558698 1558731 -241105622 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1345 110 0 88 chr1 1558731 1558946 -241105407 - AluSg/x SINE Alu -10 302 86 249 314 0 10 chr1 1559451 1559553 -241104800 + L1M4 LINE L1 4934 5034 -1112 217 296 10 61 chr1 1559682 1559780 -241104573 + MIR SINE MIR 102 194 -68 239 313 115 0 chr1 1561113 1561209 -241103144 + L2 LINE L2 2420 2526 -788 979 209 164 21 chr1 1564337 1564667 -241099686 + MLT1B LTR MaLR 14 390 0 213 273 81 30 chr1 1565578 1565677 -241098676 + MIR SINE MIR 43 146 -62 225 94 0 0 chr1 1577873 1577905 -241086448 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 2236 84 17 0 chr1 1578737 1579064 -241085289 + AluSx SINE Alu 6 337 0 1987 80 58 11 chr1 1579065 1579374 -241084979 + AluY SINE Alu 1 311 0 27 0 0 0 chr1 1579504 1579531 -241084822 + AT_rich Low_complexity Low_complexity 1 27 0 266 211 0 60 chr1 1580513 1580646 -241083707 + (GGCTG)n Simple_repeat Simple_repeat 1 125 0 291 329 90 7 chr1 1582178 1582333 -241082020 - MIR SINE MIR -83 179 12 24 0 0 0 chr1 1592435 1592459 -241071894 + AT_rich Low_complexity Low_complexity 1 24 0 270 81 0 0 chr1 1593366 1593403 -241070950 + (CA)n Simple_repeat Simple_repeat 2 38 0 195 292 0 15 chr1 1593516 1593581 -241070772 + MIR SINE MIR 80 143 -119 24 53 0 0 chr1 1597924 1597962 -241066391 + GC_rich Low_complexity Low_complexity 1 38 0 214 235 0 0 chr1 1598171 1598222 -241066131 + C-rich Low_complexity Low_complexity 1 51 0 99 82 0 0 chr1 1598278 1598510 -241065843 + GC_rich Low_complexity Low_complexity 1 232 0 225 0 0 0 chr1 1598733 1598758 -241065595 + (CCG)n Simple_repeat Simple_repeat 2 26 0 211 209 30 30 chr1 1599270 1599337 -241065016 + C-rich Low_complexity Low_complexity 4 70 0 203 250 19 0 chr1 1602380 1602432 -241061921 + CT-rich Low_complexity Low_complexity 2 54 0 22 0 0 0 chr1 1604030 1604052 -241060301 + GC_rich Low_complexity Low_complexity 1 22 0 216 189 0 0 chr1 1604377 1604414 -241059939 + MIR SINE MIR 108 144 -118 314 328 38 8 chr1 1607180 1607311 -241057042 - MIR SINE MIR -100 162 28 1198 177 0 0 chr1 1608625 1608845 -241055508 + L1MB8 LINE L1 5764 5983 -195 966 284 156 16 chr1 1609023 1609466 -241054887 - L2 LINE L2 0 3313 2809 1450 213 25 50 chr1 1609470 1609902 -241054451 + MLT1D LTR MaLR 89 503 -2 1003 265 58 11 chr1 1610246 1610605 -241053748 - HAL1 LINE L1 -895 1612 1237 293 282 261 31 chr1 1610610 1610936 -241053417 - HAL1 LINE L1 -1544 963 563 416 315 164 42 chr1 1610946 1611086 -241053267 - HAL1 LINE L1 -2046 461 339 2089 103 10 10 chr1 1611086 1611378 -241052975 - AluSq SINE Alu -21 292 1 416 315 164 42 chr1 1611378 1611646 -241052707 - HAL1 LINE L1 -2168 339 3 377 300 42 17 chr1 1611928 1612048 -241052305 + L1ME4a LINE L1 5978 6100 -21 1102 145 0 16 chr1 1612087 1612273 -241052080 + AluJb SINE Alu 129 311 -1 1079 263 138 5 chr1 1612723 1613107 -241051246 - L1MB4 LINE L1 0 6180 5746 2544 113 17 87 chr1 1614183 1614643 -241049710 + MSTA LTR MaLR 1 428 0 335 306 9 9 chr1 1615422 1615530 -241048823 + L2 LINE L2 3206 3313 0 628 172 22 21 chr1 1615546 1615827 -241048526 + (TGGA)n Simple_repeat Simple_repeat 1 281 0 919 160 7 19 chr1 1615869 1616138 -241048215 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 755 189 15 15 chr1 1616152 1616685 -241047668 + (TGGG)n Simple_repeat Simple_repeat 1 533 0 261 243 0 0 chr1 1616701 1616771 -241047582 + (TGGG)n Simple_repeat Simple_repeat 3 72 0 3202 217 29 41 chr1 1618742 1619798 -241044555 - L1MB4 LINE L1 -893 5253 4210 2198 253 44 6 chr1 1619800 1620877 -241043476 - L1MB4 LINE L1 -2698 3448 2128 1577 264 67 32 chr1 1620884 1621828 -241042525 - L1MEc LINE L1 -4287 2109 1133 712 174 0 43 chr1 1621872 1622010 -241042343 - FLAM_C SINE Alu -1 132 1 6599 156 56 48 chr1 1622160 1622690 -241041663 + Tigger1 DNA MER2_type 936 1460 -958 2441 138 40 0 chr1 1622690 1623061 -241041292 + L1PA15 LINE L1 5777 6162 -3 6599 156 56 48 chr1 1623061 1623534 -241040819 + Tigger1 DNA MER2_type 1460 1928 -490 1753 179 3 0 chr1 1623534 1623830 -241040523 - AluJo SINE Alu -15 297 1 6599 156 56 48 chr1 1623830 1624151 -241040202 + Tigger1 DNA MER2_type 1928 2277 -141 2064 129 10 0 chr1 1624151 1624461 -241039892 - AluSq SINE Alu 0 313 1 6599 156 56 48 chr1 1624461 1624605 -241039748 + Tigger1 DNA MER2_type 2277 2418 0 338 323 76 66 chr1 1624751 1624949 -241039404 + L1ME LINE L1 3595 3794 -2352 1028 154 0 0 chr1 1624969 1625125 -241039228 + AluJo SINE Alu 3 158 -154 186 209 0 0 chr1 1625257 1625300 -241039053 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 268 344 62 43 chr1 1625453 1625518 -241038835 + L1ME LINE L1 3784 3846 -2300 2064 128 6 6 chr1 1625518 1625830 -241038523 + AluSx SINE Alu 1 312 0 268 344 62 43 chr1 1625830 1626518 -241037835 + L1ME LINE L1 3846 4559 -1587 1010 215 10 0 chr1 1626518 1626723 -241037630 - L1MA4 LINE L1 -7 6293 6087 268 344 62 43 chr1 1626723 1626879 -241037474 + L1ME LINE L1 4559 4711 -1435 343 299 49 14 chr1 1627311 1627455 -241036898 + L1ME LINE L1 5364 5512 -654 226 285 58 7 chr1 1627739 1627876 -241036477 + (CA)n Simple_repeat Simple_repeat 1 144 0 * 251 248 57 25 chr1 1627805 1627962 -241036391 + (CATA)n Simple_repeat Simple_repeat 1 162 0 * 400 217 59 19 chr1 1627893 1628208 -241036145 + (CA)n Simple_repeat Simple_repeat 1 327 0 212 146 0 42 chr1 1628365 1628413 -241035940 + (GGGGA)n Simple_repeat Simple_repeat 1 46 0 306 331 64 25 chr1 1629294 1629451 -241034902 - MIR SINE MIR -92 170 8 308 248 51 15 chr1 1629758 1629895 -241034458 - LTR37A LTR ERV1 -1 425 284 197 343 97 22 chr1 1630343 1630477 -241033876 + L2 LINE L2 3103 3246 -26 544 158 20 82 chr1 1631025 1631171 -241033182 - MER31B LTR ERV1 -295 171 35 296 235 15 0 chr1 1633712 1633780 -241030573 - L1MC5 LINE L1 -918 7043 6975 653 220 147 81 chr1 1634304 1634686 -241029667 - MLT2D LTR ERVL -2 412 6 2410 59 0 0 chr1 1640921 1641210 -241023143 - AluY SINE Alu -22 289 1 1103 66 0 0 chr1 1641212 1641348 -241023005 - AluSq/x SINE Alu -177 136 1 414 121 0 0 chr1 1641349 1641415 -241022938 + THE1B LTR MaLR 299 364 0 368 242 66 0 chr1 1642444 1642552 -241021801 - MLT1I LTR MaLR -243 166 53 273 200 15 0 chr1 1642596 1642661 -241021692 + MER53 DNA DNA 99 164 -25 2655 168 7 2 chr1 1642661 1643083 -241021270 - MSTB LTR MaLR 0 426 3 9352 165 21 24 chr1 1643086 1644741 -241019612 - MSTB-int LTR MaLR -1 1650 1 2686 158 7 19 chr1 1644741 1645172 -241019181 - MSTB LTR MaLR 0 426 1 531 332 23 9 chr1 1647593 1647807 -241016546 - HERV16 LTR ERVL -2657 2339 2123 362 275 165 16 chr1 1648646 1648828 -241015525 + MIR SINE MIR 30 238 -24 1735 157 59 0 chr1 1649647 1649934 -241014419 - AluJo SINE Alu -8 304 1 192 409 0 0 chr1 1650379 1650472 -241013881 + L2 LINE L2 3146 3238 -75 864 219 0 13 chr1 1650654 1650975 -241013378 - MLT1B LTR MaLR -28 362 5 253 326 131 20 chr1 1651934 1652179 -241012174 + LTR16A1 LTR ERVL 1 272 -185 306 355 23 61 chr1 1652398 1652612 -241011741 + MIR SINE MIR 12 217 -45 620 295 52 44 chr1 1653629 1654015 -241010338 + L1MEd LINE L1 32 420 -5699 344 220 18 37 chr1 1654074 1654183 -241010170 + L1M4 LINE L1 14 120 -6422 266 264 28 0 chr1 1654190 1654262 -241010091 + ERVL LTR ERVL 3784 3857 -1907 1547 176 105 14 chr1 1654294 1654657 -241009696 + MSTA LTR MaLR 6 401 -27 435 291 34 22 chr1 1654794 1654973 -241009380 + L1M4 LINE L1 2630 2810 -3834 837 167 0 7 chr1 1657636 1657774 -241006579 + AluJb SINE Alu 160 296 -16 23 33 0 0 chr1 1661454 1661484 -241002869 + GC_rich Low_complexity Low_complexity 1 30 0 206 191 26 70 chr1 1662876 1662991 -241001362 + (CACAC)n Simple_repeat Simple_repeat 1 110 0 388 111 25 0 chr1 1663895 1663976 -241000377 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 526 263 186 43 chr1 1663998 1664321 -241000032 + MLT1F1 LTR MaLR 171 539 -28 814 271 31 68 chr1 1664540 1664924 -240999429 + MLT1B LTR MaLR 9 378 -12 509 278 17 52 chr1 1669459 1669632 -240994721 - MIR SINE MIR -76 186 20 209 333 48 48 chr1 1673496 1673622 -240990731 + MER91B DNA MER1_type 30 155 -35 1479 284 103 8 chr1 1673852 1674318 -240990035 - L1M4 LINE L1 -1326 4803 4383 1985 142 3 0 chr1 1674318 1674606 -240989747 + AluSx SINE Alu 1 289 -23 1479 284 103 8 chr1 1674606 1675052 -240989301 - L1M4 LINE L1 -1746 4383 3804 318 283 51 74 chr1 1675056 1675659 -240988694 - L1MEd LINE L1 -3756 2373 1819 413 278 56 48 chr1 1675700 1675917 -240988436 - L1MEd LINE L1 -4590 1720 1506 2526 101 27 27 chr1 1675917 1676292 -240988061 + THE1C LTR MaLR 1 375 0 10403 103 45 39 chr1 1676292 1677863 -240986490 + THE1C-int LTR MaLR 1 1580 0 2356 118 21 24 chr1 1677865 1678239 -240986114 + THE1C LTR MaLR 3 375 0 413 278 56 48 chr1 1678239 1678409 -240985944 - L1MEd LINE L1 -4804 1506 1326 795 292 42 132 chr1 1678571 1679125 -240985228 - L1MEd LINE L1 -5036 1093 601 323 127 16 0 chr1 1679862 1679925 -240984428 + GA-rich Low_complexity Low_complexity 2 65 0 895 207 93 21 chr1 1682059 1682339 -240982014 - MLT1C LTR MaLR -162 305 6 249 168 84 28 chr1 1682744 1682887 -240981466 + (CAGCC)n Simple_repeat Simple_repeat 5 155 0 448 258 110 12 chr1 1684274 1684437 -240979916 + MER45C DNA AcHobo 42 220 -733 22 35 0 0 chr1 1684996 1685025 -240979328 + AT_rich Low_complexity Low_complexity 1 29 0 317 208 28 0 chr1 1685885 1685957 -240978396 - MER69 DNA AcHobo -3 2523 2450 411 308 18 0 chr1 1687311 1687480 -240976873 + (CA)n Simple_repeat Simple_repeat 1 172 0 276 328 5 43 chr1 1687416 1687602 -240976751 + (CATA)n Simple_repeat Simple_repeat 2 180 0 * 378 242 4 0 chr1 1687658 1687937 -240976416 + (CA)n Simple_repeat Simple_repeat 1 280 0 468 239 6 10 chr1 1687974 1688284 -240976069 + (CA)n Simple_repeat Simple_repeat 1 308 0 290 227 127 9 chr1 1688331 1688441 -240975912 + MLT1A2 LTR MaLR 181 303 -71 281 240 13 0 chr1 1688453 1688528 -240975825 + (CA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr1 1689249 1689271 -240975082 + AT_rich Low_complexity Low_complexity 1 22 0 1532 155 85 7 chr1 1689278 1689549 -240974804 + AluJo SINE Alu 3 294 -18 280 281 21 42 chr1 1690504 1690600 -240973753 - MIR3 SINE MIR -20 188 95 454 299 24 6 chr1 1690968 1691143 -240973210 - MIR SINE MIR -63 145 11 1113 276 97 11 chr1 1691231 1691694 -240972659 + HAL1 LINE L1 1337 1839 -668 540 283 251 35 chr1 1691852 1692240 -240972113 + L1M2 LINE L1 1666 3127 -82 394 282 0 15 chr1 1692400 1692531 -240971822 - HAL1 LINE L1 -753 1754 1626 330 294 5 0 chr1 1694300 1694514 -240969839 + (TG)n Simple_repeat Simple_repeat 1 215 0 234 322 0 0 chr1 1694550 1694730 -240969623 + (TG)n Simple_repeat Simple_repeat 1 180 0 274 314 0 4 chr1 1694744 1694974 -240969379 + (TG)n Simple_repeat Simple_repeat 1 228 0 837 236 47 79 chr1 1697955 1698336 -240966017 - MLT1B LTR MaLR -21 369 1 245 326 139 0 chr1 1699910 1700039 -240964314 + MIR SINE MIR 46 192 -70 258 314 68 8 chr1 1701240 1701358 -240962995 + L2 LINE L2 3143 3267 -5 306 255 0 0 chr1 1702592 1702686 -240961667 + (TG)n Simple_repeat Simple_repeat 1 94 0 439 227 37 37 chr1 1702905 1703016 -240961337 + MER53 DNA DNA 1 114 -75 2259 160 24 3 chr1 1703016 1703398 -240960955 + MLT1B LTR MaLR 1 390 0 439 227 37 37 chr1 1703398 1703449 -240960904 + MER53 DNA DNA 113 163 -26 1080 147 0 0 chr1 1705569 1706313 -240958040 + (CAGCC)n Simple_repeat Simple_repeat 1 744 0 942 156 23 61 chr1 1707678 1707941 -240956412 - MLT1D LTR MaLR -206 299 47 532 381 34 19 chr1 1709349 1709669 -240954684 + L1MB5 LINE L1 5677 6001 -173 728 242 4 30 chr1 1709813 1710044 -240954309 + L1MB8 LINE L1 5948 6172 -6 246 333 28 0 chr1 1710224 1710332 -240954021 + MER53 DNA DNA 22 132 -57 289 172 16 0 chr1 1710385 1710449 -240953904 - MER53 DNA DNA -124 65 1 404 220 22 0 chr1 1711938 1712029 -240952324 + MIR SINE MIR 28 120 -142 1228 143 5 35 chr1 1713769 1713972 -240950381 + MER107 DNA MER1_type 1 197 0 448 259 125 14 chr1 1714760 1715101 -240949252 + MLT1C LTR MaLR 1 451 -16 268 400 0 7 chr1 1716323 1716463 -240947890 + (TG)n Simple_repeat Simple_repeat 1 139 0 227 250 0 30 chr1 1716532 1716664 -240947689 + (TG)n Simple_repeat Simple_repeat 1 128 0 248 239 32 13 chr1 1716716 1716871 -240947482 + (TG)n Simple_repeat Simple_repeat 1 158 0 386 250 0 22 chr1 1716904 1717088 -240947265 + (TG)n Simple_repeat Simple_repeat 1 180 0 373 240 11 17 chr1 1717105 1717284 -240947069 + (TG)n Simple_repeat Simple_repeat 1 178 0 785 243 0 0 chr1 1720278 1720426 -240943927 + FRAM SINE Alu 4 151 -15 196 248 0 16 chr1 1720811 1720936 -240943417 + (CA)n Simple_repeat Simple_repeat 1 123 0 233 320 96 6 chr1 1723327 1723483 -240940870 - MLT1K LTR MaLR -330 258 89 757 211 42 0 chr1 1724698 1724888 -240939465 - MLT1B LTR MaLR -78 312 115 428 190 117 15 chr1 1724976 1725099 -240939254 - MLT1B LTR MaLR -252 138 28 1347 266 59 11 chr1 1725818 1726291 -240938062 - L1MC1 LINE L1 0 6333 5838 262 250 0 0 chr1 1728035 1728095 -240936258 + GA-rich Low_complexity Low_complexity 3 62 0 209 269 29 0 chr1 1730156 1730260 -240934093 + (CACAC)n Simple_repeat Simple_repeat 5 111 0 850 285 79 25 chr1 1730619 1731061 -240933292 - MLT1D LTR MaLR 0 505 40 424 319 30 0 chr1 1731691 1731857 -240932496 + ERVL LTR ERVL 2145 2315 -3449 600 271 79 5 chr1 1731964 1732167 -240932186 - MER20 DNA MER1_type -1 218 1 576 225 60 161 chr1 1733651 1733742 -240930611 + MLT1B LTR MaLR 1 100 -290 294 29 0 0 chr1 1733742 1733777 -240930576 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 576 225 60 161 chr1 1733777 1733788 -240930565 + MLT1B LTR MaLR 100 111 -279 1981 136 0 0 chr1 1733788 1734067 -240930286 - AluSx SINE Alu -33 279 1 576 225 60 161 chr1 1734067 1734380 -240929973 + MLT1B LTR MaLR 111 375 -15 756 339 61 24 chr1 1734949 1735536 -240928817 + ERVL LTR ERVL 4768 5376 -388 202 290 0 19 chr1 1735569 1735676 -240928677 + (TG)n Simple_repeat Simple_repeat 1 105 0 518 239 6 17 chr1 1735689 1735869 -240928484 + (TG)n Simple_repeat Simple_repeat 1 178 0 489 249 0 17 chr1 1735926 1736107 -240928246 + (TG)n Simple_repeat Simple_repeat 1 178 0 517 216 0 28 chr1 1736168 1736349 -240928004 + (TG)n Simple_repeat Simple_repeat 1 176 0 1286 278 34 9 chr1 1737474 1737917 -240926436 + MLT1C LTR MaLR 4 457 -10 417 317 11 11 chr1 1739158 1739338 -240925015 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 132 38 0 chr1 1739602 1739655 -240924698 + (GGGTG)n Simple_repeat Simple_repeat 4 58 0 219 294 95 8 chr1 1739800 1739926 -240924427 + MIR3 SINE MIR 65 201 -7 348 257 73 0 chr1 1741288 1741397 -240922956 - MER53 DNA DNA -72 117 1 1165 254 69 8 chr1 1741652 1742042 -240922311 + MLT1C LTR MaLR 9 422 -45 248 209 60 0 chr1 1742079 1742146 -240922207 + MLT1C LTR MaLR 435 505 0 263 336 9 9 chr1 1742714 1742830 -240921523 + (CACCC)n Simple_repeat Simple_repeat 3 118 0 428 134 52 22 chr1 1743424 1743558 -240920795 + GA-rich Low_complexity Low_complexity 4 141 0 370 302 81 75 chr1 1751146 1751504 -240912849 - L2 LINE L2 -7 3265 2906 240 341 28 50 chr1 1754272 1754451 -240909902 + L2 LINE L2 2996 3170 -102 239 330 19 29 chr1 1755056 1755159 -240909194 - MIR SINE MIR -128 134 33 2046 119 7 3 chr1 1756525 1756819 -240907534 - AluSx SINE Alu -17 295 1 1180 44 11 33 chr1 1756835 1757018 -240907335 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 273 283 0 53 chr1 1762480 1762575 -240901778 - MIR SINE MIR -62 146 60 197 340 0 0 chr1 1764715 1764765 -240899588 + L2 LINE L2 3223 3272 0 295 356 8 8 chr1 1764867 1764985 -240899368 + (CACG)n Simple_repeat Simple_repeat 4 121 0 334 279 6 57 chr1 1767986 1768144 -240896209 + (CGTG)n Simple_repeat Simple_repeat 2 151 0 668 257 125 64 chr1 1769487 1769895 -240894458 - MLT1C LTR MaLR -26 441 9 227 306 7 0 chr1 1770752 1770899 -240893454 + (CAGC)n Simple_repeat Simple_repeat 4 151 0 236 242 16 0 chr1 1771320 1771382 -240892971 + G-rich Low_complexity Low_complexity 3 65 0 630 325 59 6 chr1 1772716 1773036 -240891317 - MLT1E LTR MaLR -164 429 93 690 106 35 7 chr1 1774272 1774414 -240889939 + CT-rich Low_complexity Low_complexity 1 146 0 1070 296 41 11 chr1 1774414 1774856 -240889497 - L1MC3 LINE L1 -727 7058 6604 282 203 0 14 chr1 1775550 1775619 -240888734 - L1MD3 LINE L1 -385 7610 7543 * 287 207 11 35 chr1 1775616 1775703 -240888650 + L1MD3 LINE L1 7911 7995 0 231 261 0 0 chr1 1776921 1776967 -240887386 + polypurine Low_complexity Low_complexity 3 48 0 1541 165 83 0 chr1 1780011 1780277 -240884076 - AluJo SINE Alu -21 291 4 1149 235 74 6 chr1 1780324 1780647 -240883706 + L1ME2 LINE L1 5451 5795 -371 940 255 18 24 chr1 1781811 1782140 -240882213 + L1ME2 LINE L1 5785 6111 -53 1909 206 18 8 chr1 1782149 1782547 -240881806 - L1MB3 LINE L1 -1 6182 5781 888 189 65 9 chr1 1782552 1782769 -240881584 - Tigger7 DNA MER2_type -9 2482 2254 243 247 27 0 chr1 1782839 1782912 -240881441 - Tigger7 DNA MER2_type -295 2292 2218 3142 210 54 1 chr1 1782919 1783642 -240880711 - Tigger7 DNA MER2_type -1724 763 3 735 247 68 11 chr1 1783676 1783939 -240880414 - L1MB3 LINE L1 -402 5778 5501 320 149 32 75 chr1 1784818 1784912 -240879441 - L1M3 LINE L1 -619 5549 5460 308 333 0 18 chr1 1785335 1785506 -240878847 + G-rich Low_complexity Low_complexity 2 169 0 490 286 0 0 chr1 1786103 1786215 -240878138 + MER81 DNA DNA 3 114 0 413 307 132 21 chr1 1786569 1786758 -240877595 - MIR SINE MIR -7 255 46 2301 109 0 0 chr1 1786927 1787238 -240877115 - AluSx SINE Alu -1 311 1 1122 223 106 64 chr1 1787949 1788364 -240875989 + MLT1D LTR MaLR 5 445 -60 1997 92 44 4 chr1 1788364 1788673 -240875680 - AluY SINE Alu 0 320 1 1122 223 106 64 chr1 1788673 1788737 -240875616 + MLT1D LTR MaLR 445 505 0 307 303 0 13 chr1 1788838 1788914 -240875439 + L1ME LINE L1 1261 1335 -5195 232 252 69 88 chr1 1788915 1789074 -240875279 + L1ME LINE L1 1766 1921 -4619 * 1522 231 42 5 chr1 1789058 1789490 -240874863 + L1MB7 LINE L1 5565 6012 -172 1044 79 14 0 chr1 1789490 1789629 -240874724 - AluSp/q SINE Alu -17 296 156 567 179 62 0 chr1 1789636 1789781 -240874572 + L1MB7 LINE L1 6031 6184 0 441 251 44 98 chr1 1789781 1789984 -240874369 + L1ME LINE L1 1954 2145 -4576 2298 66 0 3 chr1 1790102 1790389 -240873964 + AluY SINE Alu 1 286 -25 574 275 39 14 chr1 1790405 1790612 -240873741 + LTR40b LTR ERVL 154 365 -97 592 246 94 70 chr1 1790628 1791274 -240873079 + L1ME LINE L1 2284 2910 -3630 524 279 56 45 chr1 1791297 1791530 -240872823 + L1ME LINE L1 2802 3042 -3498 1380 269 22 11 chr1 1791530 1791891 -240872462 - MLT1A1 LTR MaLR 0 365 1 524 279 56 45 chr1 1791891 1792012 -240872341 + L1ME LINE L1 3042 3160 -3380 330 253 0 0 chr1 1792012 1792091 -240872262 - MER96 DNA MER1_type? 0 175 97 918 292 45 14 chr1 1792135 1792553 -240871800 + L1ME LINE L1 4301 4731 -1809 393 118 0 128 chr1 1792556 1792658 -240871695 - LTR52 LTR ERVL 0 421 333 528 167 0 0 chr1 1792659 1792803 -240871550 + (CA)n Simple_repeat Simple_repeat 1 144 0 863 260 17 51 chr1 1792805 1793155 -240871198 - LTR52 LTR ERVL -80 341 4 1612 147 44 34 chr1 1793216 1793751 -240870602 + MER51A LTR ERV1 1 622 -12 902 301 135 26 chr1 1793772 1794056 -240870297 + L1ME LINE L1 4768 5020 -1520 2232 125 0 0 chr1 1794056 1794367 -240869986 + AluSx SINE Alu 1 311 -1 902 301 135 26 chr1 1794367 1794732 -240869621 + L1ME LINE L1 5020 5488 -1052 1276 305 52 45 chr1 1794746 1794973 -240869380 + L1ME LINE L1 5573 5797 -767 2228 100 3 10 chr1 1794973 1795282 -240869071 + AluSg SINE Alu 1 307 -3 1276 305 52 45 chr1 1795282 1795860 -240868493 + L1ME LINE L1 5797 6389 -175 3391 141 11 19 chr1 1795978 1796509 -240867844 + MER1A DNA MER1_type 1 527 0 180 0 0 0 chr1 1797347 1797367 -240866986 + (A)n Simple_repeat Simple_repeat 1 20 0 295 242 40 0 chr1 1798929 1799028 -240865325 + MER82 DNA MER2_type 338 440 -213 251 296 37 0 chr1 1799067 1799148 -240865205 + MER82 DNA MER2_type 570 653 0 234 48 0 95 chr1 1799148 1799190 -240865163 + L1MB7 LINE L1 6099 6136 -48 1006 226 169 10 chr1 1801166 1801480 -240862873 - MLT1A1 LTR MaLR -1 364 1 343 229 74 16 chr1 1801551 1801673 -240862680 - MER117 DNA MER1_type -34 163 35 193 344 16 0 chr1 1801821 1801885 -240862468 + L2 LINE L2 3195 3259 -13 23 0 0 0 chr1 1802750 1802773 -240861580 + GC_rich Low_complexity Low_complexity 1 23 0 430 248 26 0 chr1 1803037 1803150 -240861203 - MER3 DNA MER1_type -25 184 69 3791 98 4 6 chr1 1805187 1805699 -240858654 + MER9 LTR ERVK 1 511 0 347 214 30 15 chr1 1805777 1805908 -240858445 + CT-rich Low_complexity Low_complexity 2 134 0 673 277 33 5 chr1 1806130 1806314 -240858039 - MER53 DNA DNA 0 189 1 843 222 111 0 chr1 1807619 1807880 -240856473 + MLT1B LTR MaLR 94 383 -7 453 19 0 0 chr1 1808685 1808739 -240855614 + (CA)n Simple_repeat Simple_repeat 2 55 0 1614 190 169 5 chr1 1808864 1809232 -240855121 + MSTA LTR MaLR 1 428 0 265 214 18 0 chr1 1809467 1809523 -240854830 + MLT1D LTR MaLR 1 57 -448 645 252 66 34 chr1 1809531 1809912 -240854441 - MLT2B1 LTR ERVL -1 413 2 1333 198 88 35 chr1 1809915 1810315 -240854038 + MLT1D LTR MaLR 77 497 -8 320 295 29 22 chr1 1810316 1810455 -240853898 - L1ME LINE L1 -293 5828 5689 416 300 6 6 chr1 1813782 1814327 -240850026 + (TG)n Simple_repeat Simple_repeat 1 545 0 285 315 0 0 chr1 1814367 1814440 -240849913 + MIR SINE MIR 76 148 -114 507 164 214 0 chr1 1814440 1814580 -240849773 - MER69A DNA AcHobo -3 174 5 349 372 0 16 chr1 1814821 1815004 -240849349 + (CA)n Simple_repeat Simple_repeat 1 180 0 3277 127 45 0 chr1 1816165 1816654 -240847699 - MER75 DNA T2_type -3 511 1 340 287 110 27 chr1 1816704 1817137 -240847216 + MLT1H LTR MaLR 31 540 -2 1542 178 4 11 chr1 1817137 1817406 -240846947 - AluJb SINE Alu -45 267 1 1873 145 7 10 chr1 1818160 1818456 -240845897 + AluJb SINE Alu 1 295 -17 4385 131 101 47 chr1 1819138 1819918 -240844435 - LTR12 LTR ERV1 0 826 5 2272 171 48 34 chr1 1819945 1820528 -240843825 - pTR5 LTR ERV1 -1111 1327 737 1325 240 110 2 chr1 1820732 1821141 -240843212 - MLT1D LTR MaLR -52 453 1 783 124 91 0 chr1 1821390 1821511 -240842842 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr1 1821511 1821548 -240842805 + AT_rich Low_complexity Low_complexity 1 37 0 226 259 73 134 chr1 1822321 1822568 -240841785 - L2 LINE L2 -11 3261 3030 202 306 92 0 chr1 1825525 1825623 -240838730 - L2 LINE L2 -30 3242 3136 209 185 37 0 chr1 1825740 1825794 -240838559 - L2 LINE L2 -372 2942 2887 * 227 322 63 28 chr1 1825786 1825929 -240838424 + MIR SINE MIR 37 184 -78 867 220 258 0 chr1 1826083 1826420 -240837933 + MER31B LTR ERV1 43 466 0 206 241 0 19 chr1 1827232 1827286 -240837067 + CT-rich Low_complexity Low_complexity 1 53 0 337 306 133 31 chr1 1833836 1834062 -240830291 - L2 LINE L2 -344 2970 2702 2244 106 0 0 chr1 1834062 1834355 -240829998 - AluSq SINE Alu -19 294 2 337 306 133 31 chr1 1834355 1834445 -240829908 - L2 LINE L2 -612 2702 2622 299 317 0 0 chr1 1834445 1834625 -240829728 + GA-rich Low_complexity Low_complexity 1 180 0 * 336 300 0 0 chr1 1834514 1834694 -240829659 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 362 289 0 0 chr1 1834713 1834886 -240829467 + (GCTG)n Simple_repeat Simple_repeat 1 173 0 338 321 0 0 chr1 1834809 1835155 -240829198 + (TGGG)n Simple_repeat Simple_repeat 1 346 0 * 295 328 0 0 chr1 1835137 1835311 -240829042 + (GCTG)n Simple_repeat Simple_repeat 4 177 0 * 201 353 82 0 chr1 1835795 1835880 -240828473 + MIR SINE MIR 155 246 -16 803 265 95 33 chr1 1837185 1837521 -240826832 - MLT1A1 LTR MaLR -8 357 1 657 261 96 58 chr1 1837750 1838169 -240826184 + MLT1H LTR MaLR 14 490 -59 1349 136 10 5 chr1 1838171 1838377 -240825976 - AluJb SINE Alu -19 293 87 313 185 0 0 chr1 1838377 1838442 -240825911 + MLT1H LTR MaLR 485 549 0 687 312 44 16 chr1 1838539 1838969 -240825384 + L1ME LINE L1 3851 4292 -1854 1328 208 14 41 chr1 1839133 1839427 -240824926 + AluJb SINE Alu 10 295 -17 211 260 0 19 chr1 1839461 1839565 -240824788 + GA-rich Low_complexity Low_complexity 3 104 0 237 306 0 10 chr1 1839593 1839691 -240824662 + L1ME LINE L1 4741 4837 -1309 465 252 67 20 chr1 1839827 1840255 -240824098 + L1ME LINE L1 5026 5481 -689 237 155 14 84 chr1 1840257 1840328 -240824025 + L1P5 LINE L1 5397 5462 -692 981 285 138 42 chr1 1840406 1841162 -240823191 + L1ME LINE L1 51 918 -5152 1506 172 69 0 chr1 1841162 1841424 -240822929 + AluJb SINE Alu 31 310 -2 981 285 138 42 chr1 1841424 1841615 -240822738 + L1ME LINE L1 918 1089 -4981 330 281 94 25 chr1 1842358 1842518 -240821835 - MIR SINE MIR -28 234 64 1822 113 58 0 chr1 1844312 1844614 -240819739 - AluSx SINE Alu 0 318 1 540 92 92 0 chr1 1844980 1845143 -240819210 + (CA)n Simple_repeat Simple_repeat 1 178 0 185 370 151 0 chr1 1848273 1848392 -240815961 + MIR SINE MIR 118 254 -8 247 292 0 0 chr1 1848404 1848493 -240815860 + (CAGCC)n Simple_repeat Simple_repeat 1 89 0 1894 216 50 34 chr1 1848565 1849397 -240814956 + LTR13 LTR ERVK 1 901 -106 348 250 0 0 chr1 1850614 1850686 -240813667 + MIR SINE MIR 78 149 -59 7002 182 43 118 chr1 1850689 1852140 -240812213 + L1MB3 LINE L1 2878 4436 -1710 712 189 57 46 chr1 1852140 1852315 -240812038 + MER8 DNA MER2_type 1 177 -62 7002 182 43 118 chr1 1852315 1852348 -240812005 + L1MB3 LINE L1 4436 4470 -1676 341 186 43 0 chr1 1852348 1852418 -240811935 - Tigger2 DNA MER2_type -2645 73 1 7002 182 43 118 chr1 1852418 1853328 -240811025 + L1MB3 LINE L1 4470 5319 -827 1367 94 5 5 chr1 1853328 1853520 -240810833 - AluSg/x SINE Alu -24 288 97 4203 171 9 28 chr1 1853527 1853825 -240810528 + L1MB3 LINE L1 5317 5619 -564 2265 95 0 3 chr1 1853825 1854131 -240810222 + AluSg SINE Alu 1 305 -5 4203 171 9 28 chr1 1854131 1854716 -240809637 + L1MB3 LINE L1 5619 6183 0 353 193 0 0 chr1 2055975 2056032 -240608321 - AluJ/FLAM SINE Alu -245 57 1 1030 230 111 51 chr1 2056749 2057180 -240607173 - MLT1C LTR MaLR 0 467 11 837 176 20 0 chr1 2058043 2058191 -240606162 + FRAM SINE Alu 4 154 -22 1315 152 94 18 chr1 2059658 2059935 -240604418 - MER7A DNA MER2_type 0 346 51 1540 152 141 0 chr1 2060323 2060586 -240603767 + AluJb SINE Alu 1 300 -12 2610 56 0 0 chr1 2061305 2061607 -240602746 - AluY SINE Alu -9 302 1 1541 130 0 0 chr1 2061805 2062033 -240602320 + AluSg/x SINE Alu 81 310 0 858 236 86 17 chr1 2062524 2062825 -240601528 + MER33 DNA MER1_type 1 322 -2 210 236 0 0 chr1 2062933 2062988 -240601365 + CT-rich Low_complexity Low_complexity 1 55 0 25 51 0 0 chr1 2063295 2063334 -240601019 + AT_rich Low_complexity Low_complexity 1 39 0 2171 96 30 23 chr1 2063619 2063920 -240600433 - AluSp SINE Alu -8 305 3 33 43 0 0 chr1 2063968 2064015 -240600338 + AT_rich Low_complexity Low_complexity 1 47 0 1447 133 13 4 chr1 2064094 2064319 -240600034 + AluJb SINE Alu 73 299 -13 1722 127 0 4 chr1 2065013 2065249 -240599104 - AluSq SINE Alu 0 313 79 784 132 0 150 chr1 2065250 2065417 -240598936 - AluSc SINE Alu -35 274 133 2417 79 0 3 chr1 2065682 2065973 -240598380 + AluSg SINE Alu 2 291 -19 1845 145 91 0 chr1 2066090 2066366 -240597987 + AluJo SINE Alu 1 301 -11 2080 144 0 0 chr1 2066656 2066955 -240597398 + AluSx SINE Alu 1 299 -13 2495 37 27 7 chr1 2067364 2067662 -240596691 + AluY SINE Alu 1 304 -7 2070 131 17 7 chr1 2068904 2069202 -240595151 + AluSx SINE Alu 1 301 -11 2270 121 0 3 chr1 2069206 2069513 -240594840 + AluSx SINE Alu 1 306 -6 266 243 196 0 chr1 2069745 2069852 -240594501 + MIR SINE MIR 15 142 -120 2069 128 7 0 chr1 2071293 2071583 -240592770 + AluJo SINE Alu 1 292 -20 599 268 141 19 chr1 2071584 2071797 -240592556 + MIR SINE MIR 21 259 -3 225 0 0 0 chr1 2073248 2073273 -240591080 + (A)n Simple_repeat Simple_repeat 1 25 0 2304 93 3 17 chr1 2073418 2073720 -240590633 - AluY SINE Alu -13 298 1 729 213 128 0 chr1 2073720 2073861 -240590492 - FRAM SINE Alu -5 161 3 2190 96 21 10 chr1 2074068 2074359 -240589994 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr1 2076055 2076079 -240588274 + AT_rich Low_complexity Low_complexity 1 24 0 2276 98 14 0 chr1 2076406 2076701 -240587652 + AluSc SINE Alu 1 299 -10 1921 156 14 0 chr1 2076705 2076994 -240587359 + AluJb SINE Alu 1 293 -19 234 250 16 16 chr1 2078577 2078641 -240585712 + L2 LINE L2 3207 3270 -2 2452 67 0 13 chr1 2078784 2079097 -240585256 - AluY SINE Alu -2 309 1 712 156 16 8 chr1 2079143 2079271 -240585082 - MER46A DNA MER2_type 0 236 108 354 316 33 0 chr1 2080919 2081071 -240583282 + L1MB1 LINE L1 6005 6161 -7 357 211 87 0 chr1 2081641 2081745 -240582608 - L2 LINE L2 -18 3295 3183 572 190 83 0 chr1 2081901 2082022 -240582331 - L1MB3 LINE L1 -1 6182 6052 1785 179 13 16 chr1 2082069 2082376 -240581977 + AluJb SINE Alu 1 306 -6 1562 121 8 32 chr1 2082471 2082720 -240581633 - AluJb SINE Alu -64 248 6 21 82 0 0 chr1 2083096 2083145 -240581208 + AT_rich Low_complexity Low_complexity 1 49 0 236 274 0 16 chr1 2084077 2084139 -240580214 - L1ME3A LINE L1 -199 5971 5911 285 329 121 9 chr1 2084159 2084390 -240579963 - L1ME3A LINE L1 -358 5812 5556 253 342 40 13 chr1 2084931 2085156 -240579197 - L1ME3A LINE L1 -832 5314 5084 451 111 0 141 chr1 2085166 2085205 -240579148 - MSTA LTR MaLR 0 428 410 2315 77 7 0 chr1 2085205 2085492 -240578861 + AluSp SINE Alu 1 289 -24 451 111 0 141 chr1 2085492 2085551 -240578802 - MSTA LTR MaLR -18 410 344 234 116 0 0 chr1 2087329 2087372 -240576981 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 265 296 48 0 chr1 2087444 2087569 -240576784 - L1MC5 LINE L1 -106 7855 7725 1175 276 95 49 chr1 2087709 2088564 -240575789 - L1MC5 LINE L1 -446 7515 6615 346 280 62 52 chr1 2089574 2089767 -240574586 - MLT1E1 LTR MaLR -163 491 297 247 258 82 44 chr1 2089956 2090115 -240574238 - L1ME LINE L1 -5124 946 782 844 226 118 19 chr1 2090115 2090438 -240573915 - L1MB7 LINE L1 -9 6175 5821 251 190 35 0 chr1 2090449 2090507 -240573846 - L1ME LINE L1 -5297 773 714 260 356 56 23 chr1 2090532 2090748 -240573605 + L1M4 LINE L1 4943 5165 -981 398 136 99 12 chr1 2090754 2090835 -240573518 + L1MB2 LINE L1 6028 6115 -56 288 216 58 90 chr1 2090931 2091150 -240573203 - L2 LINE L2 -535 2779 2499 252 264 169 41 chr1 2091557 2091871 -240572482 - MLT1H LTR MaLR -111 438 85 2089 102 3 39 chr1 2092236 2092541 -240571812 - AluSx SINE Alu -18 294 1 1902 127 57 0 chr1 2093506 2093789 -240570564 + AluSx SINE Alu 1 299 -13 1184 125 6 0 chr1 2095622 2095790 -240568563 - AluSg/x SINE Alu -24 288 120 333 216 0 0 chr1 2095890 2095978 -240568375 + G-rich Low_complexity Low_complexity 1 88 0 209 159 45 0 chr1 2096004 2096048 -240568305 + G-rich Low_complexity Low_complexity 6 51 0 264 284 0 0 chr1 2096062 2096157 -240568196 + G-rich Low_complexity Low_complexity 1 95 0 823 105 0 9 chr1 2096244 2096358 -240567995 + AluSg/x SINE Alu 182 294 -16 183 156 0 0 chr1 2096574 2096606 -240567747 + (TA)n Simple_repeat Simple_repeat 2 33 0 2395 74 0 49 chr1 2096731 2097055 -240567298 - AluSg SINE Alu -2 308 1 21 36 0 0 chr1 2097253 2097281 -240567072 + AT_rich Low_complexity Low_complexity 1 28 0 232 36 0 0 chr1 2098365 2098393 -240565960 + MIR SINE MIR 116 143 -119 2477 84 0 0 chr1 2098870 2099167 -240565186 - AluSx SINE Alu -15 297 1 1273 161 0 28 chr1 2099173 2099391 -240564962 - AluJo SINE Alu -13 299 88 3075 100 16 9 chr1 2099482 2099931 -240564422 - LTR3b LTR ERVK -48 452 1 348 210 180 0 chr1 2099987 2100087 -240564266 + MSTC LTR MaLR 11 128 -268 1830 159 10 0 chr1 2100110 2100400 -240563953 + AluJb SINE Alu 1 293 -19 2502 65 3 0 chr1 2100403 2100695 -240563658 + AluSp SINE Alu 1 293 -20 466 189 90 7 chr1 2100723 2100881 -240563472 + MSTC LTR MaLR 226 428 0 1829 167 7 3 chr1 2100891 2101185 -240563168 - AluJb SINE Alu -13 299 5 2129 133 3 0 chr1 2101216 2101509 -240562844 + AluSx SINE Alu 1 294 -18 278 153 125 0 chr1 2101589 2101661 -240562692 - L1MEc LINE L1 -6048 348 268 1625 126 168 3 chr1 2101688 2102022 -240562331 + MSTA LTR MaLR 1 389 -39 2332 64 0 37 chr1 2102022 2102355 -240561998 + AluY SINE Alu 1 322 0 1954 153 142 14 chr1 2102370 2102861 -240561492 - LOR1-int LTR ERV1 -3269 3936 1515 8221 60 14 5 chr1 2102861 2103859 -240560494 + LTR13 LTR ERVK 1 1007 0 1175 146 19 5 chr1 2103859 2104065 -240560288 + HERVK13 LTR ERVK 1 209 -7907 705 228 213 68 chr1 2104056 2104573 -240559780 + HERVK13 LTR ERVK 727 1318 -6798 * 421 283 12 58 chr1 2104560 2104733 -240559620 + HERVK13 LTR ERVK 3965 4129 -3987 * 3085 244 3 3 chr1 2104724 2106133 -240558220 + HERVK13 LTR ERVK 4572 6092 -2024 * 6199 217 3 24 chr1 2106122 2106356 -240557997 + HERVK13 LTR ERVK 6733 6970 -1146 2404 74 3 0 chr1 2106356 2106665 -240557688 + AluY SINE Alu 1 310 -1 6199 217 3 24 chr1 2106665 2107843 -240556510 + HERVK13 LTR ERVK 6970 8116 0 3702 40 4 0 chr1 2107843 2108320 -240556033 + LTR13 LTR ERVK 1 479 -528 1009 248 4 18 chr1 2108323 2108597 -240555756 - HERVK13 LTR ERVK -2972 5144 4875 1995 119 9 3 chr1 2108599 2108926 -240555427 + THE1A LTR MaLR 27 355 0 1873 129 5 18 chr1 2108926 2109357 -240554996 - LTR38-int LTR ERV1 -1097 689 364 * 2281 173 70 0 chr1 2109343 2109787 -240554566 - LTR38-int LTR ERV1 -1310 476 2 1727 152 29 79 chr1 2109788 2110208 -240554145 - LTR38 LTR ERV1 0 556 158 2176 105 20 0 chr1 2110210 2110516 -240553837 - AluSx SINE Alu 0 312 1 1994 140 11 91 chr1 2110562 2110796 -240553557 - MER4D LTR ERV1 -468 435 184 2219 115 0 0 chr1 2110796 2111101 -240553252 - AluSx SINE Alu -7 305 1 1994 140 11 91 chr1 2111101 2111312 -240553041 - MER4D LTR ERV1 -719 184 26 2382 71 0 6 chr1 2111312 2111623 -240552730 - AluY SINE Alu -2 309 1 1994 140 11 91 chr1 2111623 2111640 -240552713 - MER4D LTR ERV1 -877 26 9 1742 171 4 0 chr1 2111641 2111947 -240552406 + AluJb SINE Alu 1 307 0 1827 126 16 55 chr1 2111956 2112266 -240552087 + AluSx SINE Alu 1 298 -14 2157 99 3 48 chr1 2112373 2112748 -240551605 + MER4A LTR ERV1 1 358 -306 1655 168 7 7 chr1 2112789 2113099 -240551254 + MER4A LTR ERV1 355 664 0 183 302 95 0 chr1 2114361 2114424 -240549929 - MIR SINE MIR -62 200 132 240 297 33 33 chr1 2114490 2114581 -240549772 + L2 LINE L2 3181 3271 -1 2312 85 3 0 chr1 2114713 2115018 -240549335 - AluSx SINE Alu -6 306 1 1736 107 85 0 chr1 2115151 2115422 -240548931 + AluJb SINE Alu 1 294 -18 3875 146 35 50 chr1 2115451 2115570 -240548783 - LTR8A LTR ERV1 0 727 608 2236 101 3 0 chr1 2115570 2115876 -240548477 - AluY SINE Alu -4 307 1 3875 146 35 50 chr1 2115876 2116398 -240547955 - LTR8A LTR ERV1 -119 608 96 1897 112 69 0 chr1 2116398 2116674 -240547679 + AluSp SINE Alu 1 295 -18 3875 146 35 50 chr1 2116674 2116769 -240547584 - LTR8A LTR ERV1 -631 96 1 2215 78 0 4 chr1 2117045 2117326 -240547027 + AluSc SINE Alu 14 293 -16 2053 132 0 0 chr1 2117737 2118026 -240546327 + AluJb SINE Alu 1 289 -23 2298 96 3 0 chr1 2118035 2118338 -240546015 + AluSp SINE Alu 1 304 -9 244 274 12 12 chr1 2122687 2122771 -240541582 + GA-rich Low_complexity Low_complexity 1 84 0 232 229 71 14 chr1 2123062 2123132 -240541221 + MIR SINE MIR 110 183 -79 1834 154 10 7 chr1 2123280 2123573 -240540780 - AluSx SINE Alu -18 294 1 2159 117 0 0 chr1 2123624 2123922 -240540431 + AluSx SINE Alu 6 303 -9 2184 96 14 0 chr1 2124782 2125075 -240539278 - AluSp SINE Alu -16 297 1 2241 113 0 0 chr1 2126351 2126652 -240537701 - AluSq SINE Alu -12 301 1 1776 174 19 6 chr1 2126658 2126974 -240537379 - 7SLRNA srpRNA srpRNA 0 320 1 1563 101 5 5 chr1 2127195 2127412 -240536941 + AluSp SINE Alu 2 218 -95 1136 139 0 6 chr1 2127412 2127584 -240536769 + AluSp SINE Alu 143 313 0 1924 141 3 3 chr1 2127807 2128091 -240536262 - AluJo SINE Alu -28 284 1 220 204 19 37 chr1 2128553 2128607 -240535746 - L3 LINE CR1 -319 1258 1206 2040 110 17 0 chr1 2128966 2129258 -240535095 - AluSc SINE Alu -7 302 6 300 85 64 0 chr1 2129258 2129305 -240535048 - Alu SINE Alu -250 50 1 274 306 12 0 chr1 2129530 2129615 -240534738 + MER7A DNA MER2_type 1 84 -262 189 107 0 0 chr1 2131153 2131181 -240533172 + (GGGA)n Simple_repeat Simple_repeat 1 28 0 252 328 46 27 chr1 2134755 2134881 -240529472 - MIR SINE MIR -46 162 33 203 253 0 40 chr1 2137203 2137278 -240527075 + G-rich Low_complexity Low_complexity 6 77 0 191 122 0 24 chr1 2137380 2137421 -240526932 + (CGGGG)n Simple_repeat Simple_repeat 5 44 0 640 236 10 45 chr1 2138697 2138896 -240525457 + MER63A DNA MER1_type 1 192 -18 236 254 16 16 chr1 2139109 2139172 -240525181 + CT-rich Low_complexity Low_complexity 3 65 0 183 339 57 73 chr1 2140290 2140414 -240523939 - MIR SINE MIR -113 149 28 241 231 62 15 chr1 2141047 2141112 -240523241 - L2 LINE L2 -1 3312 3245 1816 162 7 13 chr1 2141569 2141877 -240522476 + AluJb SINE Alu 1 306 -6 277 341 41 32 chr1 2142044 2142167 -240522186 + MIR SINE MIR 124 247 -15 2294 103 0 0 chr1 2142827 2143128 -240521225 + AluSc SINE Alu 1 301 -8 719 288 126 3 chr1 2143461 2143787 -240520566 + HAL1 LINE L1 1 366 -2141 1717 195 13 3 chr1 2143800 2144108 -240520245 + AluJb SINE Alu 1 311 -1 1333 249 167 34 chr1 2144205 2144913 -240519440 + HAL1 LINE L1 856 1683 -824 2175 117 3 0 chr1 2144913 2145212 -240519141 - AluSq SINE Alu -13 300 1 1333 249 167 34 chr1 2145212 2145301 -240519052 + HAL1 LINE L1 1683 1759 -748 657 248 109 29 chr1 2145384 2145731 -240518622 + HAL1 LINE L1 2133 2507 0 300 286 0 0 chr1 2146630 2146714 -240517639 + CT-rich Low_complexity Low_complexity 2 85 0 212 149 21 0 chr1 2147950 2147997 -240516356 + C-rich Low_complexity Low_complexity 3 50 0 235 289 67 22 chr1 2148162 2148297 -240516056 - MIR3 SINE MIR -61 147 7 489 269 0 8 chr1 2149134 2149280 -240515073 + L1MDa LINE L1 1904 2073 -4493 838 269 46 9 chr1 2149281 2149605 -240514748 + L1MDa LINE L1 3222 3557 -2983 349 139 119 40 chr1 2149642 2149743 -240514610 + L1MC4 LINE L1 7918 8026 -16 474 306 77 32 chr1 2149828 2150076 -240514277 + MLT1K LTR MaLR 264 522 -66 228 245 0 0 chr1 2150144 2150193 -240514160 - L1ME LINE L1 -477 5644 5596 398 323 29 32 chr1 2150390 2150734 -240513619 + L1MDa LINE L1 3543 3885 -2655 2041 116 0 27 chr1 2150736 2151037 -240513316 - AluSg SINE Alu -17 293 1 1735 164 6 25 chr1 2151069 2151387 -240512966 + AluJb SINE Alu 1 312 0 531 155 0 31 chr1 2151402 2151480 -240512873 + AluJ/FRAM SINE Alu 216 292 -20 2150 102 7 0 chr1 2151480 2151774 -240512579 + AluSc SINE Alu 1 296 -13 531 155 0 31 chr1 2151774 2151792 -240512561 + AluJ/FRAM SINE Alu 292 309 -3 303 274 19 0 chr1 2151803 2151909 -240512444 + L1MDa LINE L1 3906 4013 -2527 1831 127 3 47 chr1 2151912 2152023 -240512330 + AluJb SINE Alu 2 116 -196 2336 73 3 3 chr1 2152023 2152325 -240512028 - AluY SINE Alu -9 302 1 1831 127 3 47 chr1 2152325 2152513 -240511840 + AluJb SINE Alu 116 288 -24 211 220 0 0 chr1 2152526 2152576 -240511777 + A-rich Low_complexity Low_complexity 1 50 0 257 289 0 10 chr1 2152600 2152704 -240511649 + L1MDa LINE L1 4025 4127 -2413 181 280 113 48 chr1 2153484 2153601 -240510752 + MIR3 SINE MIR 1 134 -74 2175 101 3 10 chr1 2153601 2153907 -240510446 - AluSg1 SINE Alu -5 304 1 181 280 113 48 chr1 2153907 2153957 -240510396 + MIR3 SINE MIR 134 179 -29 184 343 45 0 chr1 2155287 2155354 -240508999 + MIR3 SINE MIR 112 181 -27 2241 83 9 46 chr1 2156330 2156655 -240507698 + AluSp SINE Alu 1 313 0 256 194 54 75 chr1 2157587 2157680 -240506673 - LTR45B LTR ERV1 -1 488 398 1267 177 165 11 chr1 2157689 2157983 -240506370 + AluSg SINE Alu 1 334 0 2389 58 0 0 chr1 2158065 2158356 -240505997 + AluY SINE Alu 1 291 -20 3882 190 31 52 chr1 2158575 2159565 -240504788 - LTR5 LTR ERVK 0 969 1 1475 199 39 77 chr1 2159689 2159783 -240504570 + MER7A DNA MER2_type 1 97 -2941 2384 79 3 0 chr1 2159783 2160086 -240504267 + AluY SINE Alu 1 304 -7 1475 199 39 77 chr1 2160086 2160353 -240504000 + MER7A DNA MER2_type 97 346 0 3872 181 79 51 chr1 2160819 2161747 -240502606 + LTR13 LTR ERVK 1 954 0 1139 106 0 0 chr1 2162049 2162209 -240502144 + AluSg/x SINE Alu 153 312 0 22 0 0 0 chr1 2162620 2162642 -240501711 + GC_rich Low_complexity Low_complexity 1 22 0 614 347 157 2 chr1 2164366 2164781 -240499572 - L2 LINE L2 -1 3312 2834 221 259 193 7 chr1 2164843 2164978 -240499375 - L2 LINE L2 -637 2677 2518 221 0 0 33 chr1 2165436 2165466 -240498887 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2096 73 18 0 chr1 2165508 2165782 -240498571 - AluY SINE Alu -32 279 1 1942 122 7 26 chr1 2166032 2166336 -240498017 - AluJb SINE Alu -14 298 1 278 309 112 45 chr1 2167386 2167609 -240496744 - L2 LINE L2 -2 3270 3033 3072 114 109 80 chr1 2168267 2168883 -240495470 - MER51A LTR ERV1 0 634 1 1868 107 52 10 chr1 2169231 2169521 -240494832 + AluSx SINE Alu 1 302 -10 2320 91 0 0 chr1 2172090 2172388 -240491965 - AluSg SINE Alu -12 298 1 283 324 56 21 chr1 2174745 2174887 -240489466 + MIR SINE MIR 3 149 -113 194 250 31 16 chr1 2177978 2178042 -240486311 + MIR SINE MIR 79 143 -119 262 299 86 0 chr1 2179467 2179584 -240484769 - MIR SINE MIR -72 190 64 182 325 51 26 chr1 2180270 2180387 -240483966 - L2 LINE L2 -144 3128 3009 1574 153 29 70 chr1 2180950 2181264 -240483089 - AluJo SINE Alu -2 310 10 830 147 10 28 chr1 2183027 2183570 -240480783 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 789 137 6 27 chr1 2183590 2183773 -240480580 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 738 149 7 18 chr1 2183788 2184067 -240480286 + (TCCA)n Simple_repeat Simple_repeat 1 275 0 620 164 11 27 chr1 2184078 2184261 -240480092 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 753 185 4 15 chr1 2184287 2184558 -240479795 + (TCCA)n Simple_repeat Simple_repeat 1 268 0 253 109 36 18 chr1 2184559 2184614 -240479739 + (CCCA)n Simple_repeat Simple_repeat 1 56 0 2230 101 0 0 chr1 2184931 2185229 -240479124 - AluSx SINE Alu -14 298 1 400 306 38 48 chr1 2186782 2187305 -240477048 - TAR1 Satellite telomeric -570 1541 1024 206 385 19 0 chr1 2189012 2189116 -240475237 - MIR3 SINE MIR -7 201 96 1962 105 30 23 chr1 2189750 2190029 -240474324 + AluSx SINE Alu 1 284 -28 414 0 0 0 chr1 2190029 2190075 -240474278 + (CA)n Simple_repeat Simple_repeat 1 46 0 1962 105 30 23 chr1 2190075 2190099 -240474254 + AluSx SINE Alu 284 306 -6 189 0 0 0 chr1 2191734 2191755 -240472598 + (CCCCG)n Simple_repeat Simple_repeat 5 25 0 345 275 101 0 chr1 2197097 2197235 -240467118 + MIR SINE MIR 20 171 -91 306 106 0 0 chr1 2198097 2198144 -240466209 + (CA)n Simple_repeat Simple_repeat 1 47 0 186 349 177 16 chr1 2198731 2198923 -240465430 - MIR SINE MIR -6 256 34 325 333 8 8 chr1 2199114 2199240 -240465113 + (TG)n Simple_repeat Simple_repeat 1 126 0 401 343 129 5 chr1 2201336 2201537 -240462816 + MIR SINE MIR 2 227 -35 336 308 19 9 chr1 2203613 2203720 -240460633 - MIR SINE MIR -65 197 90 23 0 0 0 chr1 2203836 2203859 -240460494 + GC_rich Low_complexity Low_complexity 1 23 0 283 286 39 77 chr1 2204635 2204777 -240459576 + L1M4 LINE L1 5735 5871 -307 811 181 7 7 chr1 2204783 2204932 -240459421 + FRAM SINE Alu 19 167 -9 201 139 28 0 chr1 2205498 2205534 -240458819 + L2 LINE L2 3137 3173 -99 545 298 99 8 chr1 2205539 2205801 -240458552 + MER33 DNA MER1_type 13 298 -26 418 257 76 76 chr1 2208029 2208157 -240456196 + MIR SINE MIR 23 153 -109 2125 111 0 13 chr1 2208157 2208463 -240455890 + AluSx SINE Alu 1 302 -10 418 257 76 76 chr1 2208463 2208505 -240455848 + MIR SINE MIR 152 193 -69 2029 64 64 4 chr1 2209172 2209439 -240454914 - AluSx SINE Alu -17 295 13 236 234 32 53 chr1 2210157 2210251 -240454102 + C-rich Low_complexity Low_complexity 4 95 0 212 364 96 11 chr1 2212862 2213049 -240451304 - L2 LINE L2 -842 2472 2270 234 298 276 0 chr1 2213991 2214219 -240450134 + L2 LINE L2 2425 2715 -599 233 232 40 0 chr1 2214968 2215067 -240449286 - MSR1 Satellite Satellite -1 110 8 241 227 41 0 chr1 2215179 2215276 -240449077 - MSR1 Satellite Satellite -1 110 10 246 206 41 0 chr1 2215354 2215591 -240448762 - MSR1 Satellite Satellite -1 246 1 349 184 21 100 chr1 2215652 2215842 -240448511 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 246 206 41 0 chr1 2215882 2216014 -240448339 - MSR1 Satellite Satellite -1 137 1 289 188 0 134 chr1 2216040 2216242 -240448111 + (CTGGGG)n Simple_repeat Simple_repeat 4 178 0 200 264 127 0 chr1 2216389 2216483 -240447870 - MIR SINE MIR -56 152 46 227 310 30 50 chr1 2216851 2216951 -240447402 + L2 LINE L2 3216 3313 0 189 225 34 0 chr1 2217832 2217921 -240446432 + (CA)n Simple_repeat Simple_repeat 1 92 0 219 317 10 10 chr1 2217948 2218049 -240446304 + (CA)n Simple_repeat Simple_repeat 1 101 0 276 120 0 0 chr1 2222252 2222302 -240442051 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 333 358 40 0 chr1 2223054 2223205 -240441148 - MIR SINE MIR -78 184 28 534 256 235 21 chr1 2226043 2226422 -240437931 + MLT1K LTR MaLR 19 478 -110 337 190 13 25 chr1 2226562 2226641 -240437712 + MLT1K LTR MaLR 452 529 -59 281 323 50 0 chr1 2228930 2229029 -240435324 - MIR SINE MIR -88 174 71 260 302 62 10 chr1 2229498 2229594 -240434759 - MIR3 SINE MIR -41 167 67 597 294 11 0 chr1 2229606 2229783 -240434570 + L1MB5 LINE L1 5698 5876 -298 372 337 97 42 chr1 2229862 2230550 -240433803 + L1M4c LINE L1 796 1493 -4891 253 318 121 15 chr1 2231084 2231216 -240433137 - MER5A DNA MER1_type 0 189 44 1666 178 0 35 chr1 2231961 2232275 -240432078 + AluJo SINE Alu 1 303 -9 408 232 126 0 chr1 2232951 2233102 -240431251 + MER20 DNA MER1_type 2 171 -48 254 260 82 48 chr1 2233202 2233348 -240431005 - MIR3 SINE MIR -55 153 3 333 340 0 38 chr1 2233504 2233689 -240430664 + C-rich Low_complexity Low_complexity 2 179 0 383 254 6 42 chr1 2233716 2233881 -240430472 + CT-rich Low_complexity Low_complexity 6 164 0 239 274 105 0 chr1 2235920 2236015 -240428338 - MIR SINE MIR -124 138 34 527 291 31 41 chr1 2236355 2236551 -240427802 + MIR SINE MIR 55 248 -14 216 307 160 40 chr1 2238204 2238354 -240425999 - MIR SINE MIR -34 228 61 208 250 111 28 chr1 2239062 2239134 -240425219 + L2 LINE L2 3232 3309 -4 2223 103 3 7 chr1 2239273 2239583 -240424770 - AluSx SINE Alu -3 309 1 198 319 43 11 chr1 2239759 2239853 -240424500 - MIR SINE MIR -103 159 63 313 374 9 9 chr1 2241257 2241364 -240422989 - L1MC5 LINE L1 -167 7794 7688 240 188 25 75 chr1 2241364 2241418 -240422935 + MER116 DNA Mariner 1 51 -29 288 0 0 0 chr1 2241418 2241450 -240422903 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 188 25 75 chr1 2241450 2241475 -240422878 + MER116 DNA Mariner 51 76 -4 2273 94 0 7 chr1 2242189 2242497 -240421856 - AluSc SINE Alu -3 306 1 1069 196 78 156 chr1 2242560 2243100 -240421253 - MLT1D LTR MaLR -7 498 1 191 227 23 0 chr1 2243558 2243602 -240420751 - MIR SINE MIR -24 238 194 873 201 10 45 chr1 2243605 2243804 -240420549 + AluJo SINE Alu 91 282 -30 2033 97 50 13 chr1 2243812 2244111 -240420242 - AluSq SINE Alu -1 312 3 1109 161 0 0 chr1 2244131 2244323 -240420030 + AluSg/x SINE Alu 121 312 0 259 175 225 0 chr1 2246111 2246191 -240418162 + MER39 LTR ERV1 291 388 -319 2096 76 69 3 chr1 2246243 2246532 -240417821 - AluY SINE Alu -3 308 1 412 324 23 6 chr1 2246558 2246734 -240417619 + MER39 LTR ERV1 500 678 -29 188 246 77 31 chr1 2246836 2246901 -240417452 + MIR SINE MIR 86 153 -109 392 182 149 41 chr1 2247239 2247360 -240416993 + MER34C LTR ERV1 4 137 -448 266 250 93 9 chr1 2247578 2247686 -240416667 + LTR48 LTR ERV1 616 732 -55 1082 116 12 6 chr1 2247893 2248057 -240416296 - FRAM SINE Alu -16 160 1 355 231 58 49 chr1 2248062 2248240 -240416113 + L1MCa LINE L1 1898 6983 -1339 1738 157 0 4 chr1 2248271 2248539 -240415814 - AluJb SINE Alu -45 267 1 1095 242 57 75 chr1 2248543 2249328 -240415025 + MER34C-int LTR ERV1 2617 3387 -1549 * 4310 198 44 47 chr1 2249323 2249986 -240414367 + MER34C-int LTR ERV1 3558 4219 -717 1688 123 53 49 chr1 2249986 2250291 -240414062 + AluSx SINE Alu 1 306 0 4310 198 44 47 chr1 2250291 2250806 -240413547 + MER34C-int LTR ERV1 4219 4734 -202 425 155 0 0 chr1 2250891 2250961 -240413392 + MER34C LTR ERV1 3 72 -513 465 96 0 0 chr1 2250961 2251034 -240413319 + MER34C LTR ERV1 1 73 -512 * 472 72 0 0 chr1 2251001 2251070 -240413283 + MER34C LTR ERV1 5 73 -512 457 87 0 0 chr1 2251037 2251106 -240413247 + MER34C LTR ERV1 5 73 -512 * 442 116 0 0 chr1 2251073 2251141 -240413212 + MER34C LTR ERV1 5 72 -513 825 195 30 37 chr1 2251141 2251377 -240412976 + MER34C LTR ERV1 1 234 -351 232 250 23 45 chr1 2251614 2251702 -240412651 + LTR48 LTR ERV1 702 787 0 378 213 56 9 chr1 2252287 2252395 -240411958 - Charlie4a DNA MER1_type -3 505 393 1156 235 24 42 chr1 2252447 2252856 -240411497 + MLT1C LTR MaLR 60 461 -6 991 274 54 3 chr1 2252870 2253184 -240411169 - Charlie4a DNA MER1_type -149 359 30 657 302 19 0 chr1 2253326 2253531 -240410822 + MIR SINE MIR 52 260 -2 2446 47 7 0 chr1 2253773 2254070 -240410283 - AluY SINE Alu -12 299 1 2093 127 0 0 chr1 2254561 2254861 -240409492 - AluSx SINE Alu -12 300 1 625 281 89 13 chr1 2255317 2255552 -240408801 - MIR SINE MIR -6 256 4 2044 125 3 13 chr1 2255766 2256077 -240408276 - AluSx SINE Alu -4 308 1 226 246 16 41 chr1 2257403 2257525 -240406828 + (CGGG)n Simple_repeat Simple_repeat 4 122 0 210 176 0 0 chr1 2259454 2259505 -240404848 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 575 176 61 14 chr1 2259528 2259676 -240404677 - MER53 DNA DNA -15 174 20 23 33 0 0 chr1 2260085 2260115 -240404238 + GC_rich Low_complexity Low_complexity 1 30 0 844 148 104 0 chr1 2263398 2263580 -240400773 - Tigger7 DNA MER2_type -3 2484 2284 * 1093 218 30 11 chr1 2263579 2263841 -240400512 - Tigger7 DNA MER2_type -233 500 234 288 297 48 0 chr1 2264423 2264588 -240399765 + (CCGCG)n Simple_repeat Simple_repeat 4 176 0 224 317 50 0 chr1 2264511 2264672 -240399681 + (CACGT)n Simple_repeat Simple_repeat 1 169 0 * 2291 80 7 0 chr1 2267209 2267509 -240396844 - AluSp SINE Alu -11 302 1 352 340 89 38 chr1 2267509 2267734 -240396619 - L1 LINE L1 -1225 4921 4667 663 216 0 0 chr1 2267734 2267859 -240396494 - FLAM_A SINE Alu -8 125 1 352 340 89 38 chr1 2267859 2267912 -240396441 - L1 LINE L1 -1479 4667 4618 444 320 20 0 chr1 2267976 2268176 -240396177 - L1 LINE L1 -3732 2414 2211 513 376 82 9 chr1 2268230 2268573 -240395780 - L1ME1 LINE L1 -16 6150 5783 287 333 0 18 chr1 2271330 2271441 -240392912 - L1MC5 LINE L1 -173 7788 7680 1857 164 27 0 chr1 2272108 2272406 -240391947 - AluJb SINE Alu -6 306 1 2135 116 0 0 chr1 2274135 2274427 -240389926 - AluJb SINE Alu -20 292 1 253 223 184 10 chr1 2275288 2275391 -240388962 - L2 LINE L2 -14 3258 3138 256 157 0 0 chr1 2275489 2275540 -240388813 - L2 LINE L2 -337 2976 2926 273 375 50 0 chr1 2275879 2275999 -240388354 + L2 LINE L2 2626 2751 -563 27 0 0 0 chr1 2276518 2276545 -240387808 + GC_rich Low_complexity Low_complexity 1 27 0 308 268 154 8 chr1 2276912 2277035 -240387318 + MIR SINE MIR 31 171 -91 21 0 0 0 chr1 2279158 2279179 -240385174 + AT_rich Low_complexity Low_complexity 1 21 0 2079 123 3 10 chr1 2279816 2280125 -240384228 + AluSc SINE Alu 3 309 0 2230 103 0 6 chr1 2280235 2280547 -240383806 + AluSx SINE Alu 1 310 -2 1990 146 11 76 chr1 2280547 2280758 -240383595 + MER4D LTR ERV1 19 187 -716 2201 118 0 0 chr1 2280758 2281063 -240383290 + AluSx SINE Alu 1 305 -7 1990 146 11 76 chr1 2281063 2281297 -240383056 + MER4D LTR ERV1 187 435 -468 1069 55 0 0 chr1 2281343 2281471 -240382882 + AluSq/x SINE Alu 1 128 -184 1948 142 0 0 chr1 2281693 2281996 -240382357 + AluSx SINE Alu 1 303 0 23 0 0 0 chr1 2283416 2283439 -240380914 + GC_rich Low_complexity Low_complexity 1 23 0 299 342 40 13 chr1 2285143 2285368 -240378985 - L1M4 LINE L1 -832 5314 5084 2058 123 10 0 chr1 2285417 2285717 -240378636 + AluSp SINE Alu 1 303 -10 1428 209 102 40 chr1 2489297 2489718 -240174635 + MLT1C LTR MaLR 21 467 0 254 198 26 129 chr1 2491335 2491451 -240172902 - L3 LINE CR1 -4 1573 1470 745 185 58 24 chr1 2492802 2493007 -240171346 + ORSL DNA AcHobo 44 255 -20 210 37 0 0 chr1 2493097 2493124 -240171229 + (CTG)n Simple_repeat Simple_repeat 3 29 0 198 300 14 0 chr1 2493496 2493566 -240170787 - MIR SINE MIR -171 91 21 215 308 205 8 chr1 2493587 2493704 -240170649 - MIR SINE MIR -81 181 42 242 279 99 36 chr1 2494415 2494526 -240169827 + MIR SINE MIR 18 135 -73 448 285 33 26 chr1 2494888 2495039 -240169314 - MIR SINE MIR -97 165 14 503 242 53 52 chr1 2495522 2495828 -240168525 + MLT1H LTR MaLR 82 382 -27 1965 122 91 28 chr1 2496624 2496976 -240167377 + THE1C LTR MaLR 1 374 -1 989 237 108 12 chr1 2496984 2497283 -240167070 - MLT1C LTR MaLR -150 355 6 299 371 74 25 chr1 2498273 2498556 -240165797 - L2 LINE L2 0 3272 2976 284 238 38 86 chr1 2498583 2498688 -240165665 + MIR SINE MIR 6 105 -157 525 262 0 21 chr1 2501830 2501971 -240162382 + L2 LINE L2 3162 3299 -14 517 194 29 0 chr1 2501992 2502167 -240162186 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 676 145 22 17 chr1 2502189 2502368 -240161985 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 234 136 0 0 chr1 2502375 2502419 -240161934 + (CATA)n Simple_repeat Simple_repeat 3 46 0 276 203 0 0 chr1 2502722 2502781 -240161572 + MER45 DNA AcHobo 1412 1470 -111 3453 213 44 7 chr1 2502829 2503584 -240160769 - MER45B DNA AcHobo -156 884 102 5179 106 3 4 chr1 2503584 2504361 -240159992 + L1PA13 LINE L1 5368 6143 -20 451 244 71 16 chr1 2504361 2504488 -240159865 - MER45B DNA AcHobo -903 137 4 279 104 0 0 chr1 2504680 2504728 -240159625 + (CA)n Simple_repeat Simple_repeat 1 48 0 356 276 26 9 chr1 2505249 2505365 -240158988 - MARNA DNA Mariner -158 428 311 389 299 52 61 chr1 2505418 2505649 -240158704 + MIR SINE MIR 31 259 -3 891 215 56 10 chr1 2505794 2505989 -240158364 + MER3 DNA MER1_type 1 204 -5 293 247 56 84 chr1 2505835 2506013 -240158340 - MER3 DNA MER1_type -5 204 32 * 377 287 73 15 chr1 2506061 2506197 -240158156 - MER103 DNA DNA -21 145 2 2126 101 7 3 chr1 2506310 2506618 -240157735 + AluY SINE Alu 1 309 -2 1313 232 150 30 chr1 2510675 2511115 -240153238 - MLT1D LTR MaLR 0 505 13 375 367 6 6 chr1 2511886 2512063 -240152290 + (TG)n Simple_repeat Simple_repeat 1 177 0 802 105 47 0 chr1 2513209 2513381 -240150972 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 965 26 52 26 chr1 2513409 2513756 -240150597 + (TAGA)n Simple_repeat Simple_repeat 1 356 0 430 263 20 0 chr1 2513885 2513984 -240150369 - L2 LINE L2 -1 3312 3212 2435 60 0 3 chr1 2514233 2514534 -240149819 + AluY SINE Alu 1 300 -11 699 225 0 0 chr1 2514631 2514800 -240149553 + (TG)n Simple_repeat Simple_repeat 1 169 0 419 297 26 0 chr1 2514830 2514985 -240149368 + (TCTA)n Simple_repeat Simple_repeat 4 162 0 363 339 78 17 chr1 2516042 2516222 -240148131 + MIR SINE MIR 5 195 -67 2283 188 94 4 chr1 2517513 2518025 -240146328 + MER74A LTR ERVL 1 558 0 363 307 117 7 chr1 2518803 2518940 -240145413 + MLT1I LTR MaLR 67 218 -191 849 221 10 28 chr1 2518997 2519307 -240145046 + MLT1A1 LTR MaLR 1 365 0 323 241 69 0 chr1 2519348 2519435 -240144918 + MLT1I LTR MaLR 315 407 -2 24 0 0 0 chr1 2519775 2519799 -240144554 + AT_rich Low_complexity Low_complexity 1 24 0 2006 197 50 10 chr1 2521781 2521944 -240142409 + MSTB LTR MaLR 15 170 -256 1702 146 3 52 chr1 2521944 2522253 -240142100 + AluJb SINE Alu 1 294 -18 2006 197 50 10 chr1 2522253 2522485 -240141868 + MSTB LTR MaLR 170 426 0 526 250 60 24 chr1 2522928 2523096 -240141257 + MER5B DNA MER1_type 2 175 -3 403 247 103 7 chr1 2523107 2523253 -240141100 + MER5A DNA MER1_type 1 160 -29 321 312 263 0 chr1 2524580 2524785 -240139568 - MIR SINE MIR -1 261 3 282 179 0 0 chr1 2525622 2525678 -240138675 + GA-rich Low_complexity Low_complexity 1 56 0 195 222 0 0 chr1 2526207 2526243 -240138110 + L3b LINE CR1 1531 1566 -17 213 244 0 0 chr1 2526539 2526584 -240137769 + L2 LINE L2 3267 3311 -2 2251 211 33 21 chr1 2526617 2527128 -240137225 + MLT1E2 LTR MaLR 1 517 -109 241 254 18 0 chr1 2527170 2527225 -240137128 + LTR16B LTR ERVL 409 464 0 198 286 163 32 chr1 2528064 2528316 -240136037 + L2 LINE L2 2472 2756 -558 222 288 178 0 chr1 2528442 2528560 -240135793 + L2 LINE L2 3175 3313 0 2186 163 66 12 chr1 2529066 2529476 -240134877 - MSTB1 LTR MaLR 0 432 1 505 309 98 5 chr1 2530093 2530287 -240134066 + MIR SINE MIR 47 258 -4 441 0 0 0 chr1 2530524 2530573 -240133780 + (CA)n Simple_repeat Simple_repeat 2 50 0 248 313 143 7 chr1 2530631 2530778 -240133575 + MER5B DNA MER1_type 6 172 -6 548 278 9 52 chr1 2531129 2531359 -240132994 + L1MC5 LINE L1 7642 7861 -100 1351 153 63 4 chr1 2531417 2531672 -240132681 + L1MA7 LINE L1 6021 6290 -1 404 212 12 0 chr1 2532134 2532219 -240132134 - MLT1B LTR MaLR 0 390 305 2287 146 54 10 chr1 2532224 2532629 -240131724 + MER83 LTR ERV1 1 423 -25 225 175 0 0 chr1 2532677 2532712 -240131641 - MLT1B LTR MaLR -88 302 267 2698 113 3 3 chr1 2532712 2533076 -240131277 - THE1B LTR MaLR 0 364 1 10656 102 25 40 chr1 2533076 2534681 -240129672 - THE1B-int LTR MaLR 0 1580 1 2828 93 0 3 chr1 2534681 2535046 -240129307 - THE1B LTR MaLR 0 364 1 1367 186 15 8 chr1 2535046 2535310 -240129043 - MLT1B LTR MaLR -118 272 7 2156 132 0 3 chr1 2535750 2536061 -240128292 - AluSg SINE Alu 0 310 1 276 261 8 75 chr1 2537056 2537190 -240127163 - MIR SINE MIR -74 134 10 2312 113 0 0 chr1 2537268 2537568 -240126785 + AluSg SINE Alu 2 301 -9 359 296 47 69 chr1 2538294 2538527 -240125826 + MLT1L LTR MaLR 355 582 -33 192 248 124 29 chr1 2538874 2538979 -240125374 - MIR SINE MIR -119 143 29 437 257 90 66 chr1 2539358 2539693 -240124660 + L1ME4a LINE L1 5778 6120 -1 213 207 138 35 chr1 2541277 2541364 -240122989 - L2 LINE L2 0 3272 3177 251 308 47 47 chr1 2541626 2541798 -240122555 + MIR3 SINE MIR 22 193 -15 463 312 183 10 chr1 2542260 2542757 -240121596 - L2 LINE L2 -372 2942 2360 2861 119 24 5 chr1 2542763 2543183 -240121170 + MSTA LTR MaLR 1 428 0 8571 155 65 37 chr1 2543183 2544789 -240119564 + MSTA-int LTR MaLR 1 1651 0 2482 163 24 5 chr1 2544791 2545209 -240119144 + MSTA LTR MaLR 3 428 0 340 323 19 19 chr1 2545237 2545395 -240118958 - MER97b DNA MER1_type? -895 158 1 2437 274 152 20 chr1 2545415 2546768 -240117585 - L2 LINE L2 -1010 2304 773 1220 281 85 47 chr1 2546770 2547265 -240117088 - MLT1G1 LTR MaLR -1 594 81 4188 101 3 0 chr1 2547603 2548177 -240116176 - LTR24B LTR ERV1 0 576 1 201 227 171 0 chr1 2548334 2548422 -240115931 - L2 LINE L2 -1957 1357 1255 324 182 0 15 chr1 2548425 2548491 -240115862 - MLT1F1-int LTR MaLR -1302 69 5 578 260 143 11 chr1 2548503 2548903 -240115450 - MLT1F1 LTR MaLR -8 559 75 1206 255 195 21 chr1 2548957 2549619 -240114734 - L2 LINE L2 -2537 777 1 408 263 99 29 chr1 2550258 2550429 -240113924 + MIR SINE MIR 32 214 -48 1653 196 26 53 chr1 2550437 2550814 -240113539 + MLT1A2 LTR MaLR 1 367 -7 314 224 61 41 chr1 2551208 2551306 -240113047 - L2 LINE L2 -3 3310 3211 200 162 0 0 chr1 2551481 2551518 -240112835 - L2 LINE L2 -336 2977 2941 4213 123 41 8 chr1 2551835 2552355 -240111998 + L1MA6 LINE L1 5614 6162 -138 2276 177 16 61 chr1 2552355 2552592 -240111761 - MER66B LTR ERV1 0 486 283 1987 153 3 3 chr1 2552592 2552893 -240111460 - AluJb SINE Alu -3 309 9 2276 177 16 61 chr1 2552893 2553164 -240111189 - MER66B LTR ERV1 -203 283 1 4213 123 41 8 chr1 2553164 2553308 -240111045 + L1MA6 LINE L1 6162 6300 0 25 0 0 0 chr1 2553335 2553360 -240110993 + AT_rich Low_complexity Low_complexity 1 25 0 7928 191 12 4 chr1 2553675 2555275 -240109078 - L1 LINE L1 -2299 3847 2235 6954 132 21 5 chr1 2555258 2557088 -240107265 + L1MA5 LINE L1 4436 6300 0 * 5864 189 27 21 chr1 2557161 2558162 -240106191 + L1MB3 LINE L1 3 997 -5422 2404 54 40 78 chr1 2558162 2558535 -240105818 + L1PA6 LINE L1 5796 6154 0 5864 189 27 21 chr1 2558535 2561100 -240103253 + L1MB3 LINE L1 997 3545 -2874 16463 141 23 16 chr1 2561100 2563800 -240100553 + Tigger2 DNA MER2_type 1 2718 0 5864 189 27 21 chr1 2563800 2565244 -240099109 + L1MB3 LINE L1 3545 6201 -218 279 288 23 13 chr1 2565386 2565516 -240098837 + MIR SINE MIR 37 165 -76 224 288 12 6 chr1 2565941 2566060 -240098293 - MIR SINE MIR -33 229 110 1115 156 0 0 chr1 2567404 2567584 -240096769 + L1MA1 LINE L1 6123 6302 0 2219 122 22 35 chr1 2567675 2568044 -240096309 - THE1B LTR MaLR 0 364 1 812 211 70 6 chr1 2568495 2568666 -240095687 - MLT1D LTR MaLR 0 505 324 938 206 58 84 chr1 2568852 2569119 -240095234 - MLT1D LTR MaLR -169 336 78 2795 183 14 19 chr1 2569119 2569634 -240094719 - MLT2B2 LTR ERVL -3 512 1 938 206 58 84 chr1 2569634 2569711 -240094642 - MLT1D LTR MaLR -427 78 1 247 308 56 28 chr1 2570980 2571087 -240093266 - L2 LINE L2 -8 3305 3196 314 250 143 57 chr1 2571371 2571551 -240092802 - MIR SINE MIR -31 231 42 1403 277 133 63 chr1 2571552 2571728 -240092625 + L1ME2 LINE L1 37 199 -6197 2547 57 6 25 chr1 2571728 2572045 -240092308 - AluY SINE Alu 0 311 1 1403 277 133 63 chr1 2572045 2573382 -240090971 + L1ME2 LINE L1 199 1656 -4740 443 301 43 11 chr1 2573398 2573584 -240090769 + L1ME2 LINE L1 1754 1945 -4451 * 576 223 27 0 chr1 2573579 2573727 -240090626 + L1ME2 LINE L1 4344 4495 -1720 1965 256 28 50 chr1 2573749 2574394 -240089959 - L1ME1 LINE L1 -5 6161 5531 1710 215 78 82 chr1 2574396 2575161 -240089192 + L1ME2 LINE L1 5272 6030 -201 2080 211 37 8 chr1 2575183 2575639 -240088714 + MER54A LTR ERVL 25 697 -204 2425 145 57 5 chr1 2575639 2575841 -240088512 - MSTA LTR MaLR 0 428 238 243 0 0 0 chr1 2575841 2575868 -240088485 + (TGG)n Simple_repeat Simple_repeat 1 27 0 2425 145 57 5 chr1 2575868 2576072 -240088281 - MSTA LTR MaLR -190 238 1 6774 174 31 8 chr1 2576072 2577254 -240087099 - MSTA-int LTR MaLR 0 1651 443 809 105 0 0 chr1 2577254 2577368 -240086985 + AluSg/x SINE Alu 196 309 0 476 201 49 36 chr1 2577368 2577522 -240086831 + L1ME2 LINE L1 6075 6232 -3 244 232 11 53 chr1 2578864 2578959 -240085394 - MIR SINE MIR -132 130 40 406 330 35 20 chr1 2579930 2580133 -240084220 - MIR SINE MIR -37 225 20 486 322 28 6 chr1 2580207 2580384 -240083969 - MIR SINE MIR -59 203 23 309 263 127 36 chr1 2580481 2580687 -240083666 + MIR SINE MIR 21 258 -4 25 31 0 0 chr1 2581579 2581611 -240082742 + AT_rich Low_complexity Low_complexity 1 32 0 2593 133 53 2 chr1 2581836 2582235 -240082118 + MSTA LTR MaLR 10 428 0 493 247 105 39 chr1 2582269 2582572 -240081781 - L1ME LINE L1 -360 5802 5483 397 287 12 37 chr1 2582986 2583150 -240081203 - L1P5 LINE L1 -698 5456 5297 1280 271 119 53 chr1 2583548 2584675 -240079678 - L1ME LINE L1 -1609 4537 3337 343 291 35 57 chr1 2584757 2584898 -240079455 + L1ME4a LINE L1 5984 6121 0 869 244 153 49 chr1 2585537 2586263 -240078090 + LTR1 LTR ERV1 28 826 0 2480 113 108 5 chr1 2586478 2586866 -240077487 + MSTA LTR MaLR 1 428 0 587 316 112 47 chr1 2587102 2587252 -240077101 + L2 LINE L2 2300 2439 -874 2169 110 7 0 chr1 2587252 2587562 -240076791 - AluSx SINE Alu 0 312 1 587 316 112 47 chr1 2587562 2587580 -240076773 + L2 LINE L2 2439 2454 -859 3580 201 21 61 chr1 2587580 2588590 -240075763 - LTR5 LTR ERVK 0 969 1 587 316 112 47 chr1 2588590 2589373 -240074980 + L2 LINE L2 2454 3311 -2 434 218 224 36 chr1 2590480 2590647 -240073706 + MIR SINE MIR 4 195 -63 3039 160 4 8 chr1 2591496 2591991 -240072362 - THE1-int LTR MaLR -197 1383 891 318 143 0 0 chr1 2592052 2592115 -240072238 + (TG)n Simple_repeat Simple_repeat 2 64 0 448 186 4 18 chr1 2592122 2592343 -240072010 + CT-rich Low_complexity Low_complexity 1 218 0 272 238 0 10 chr1 2592362 2592463 -240071890 + CT-rich Low_complexity Low_complexity 1 100 0 1050 123 0 37 chr1 2592832 2592977 -240071376 - THE1C LTR MaLR 0 375 237 1998 82 59 0 chr1 2592977 2593247 -240071106 - THE1A LTR MaLR 0 355 70 530 48 0 0 chr1 2593505 2593568 -240070785 - THE1A LTR MaLR -292 63 1 1402 110 33 49 chr1 2593568 2593813 -240070540 - THE1C LTR MaLR -134 241 1 703 278 47 0 chr1 2593846 2594015 -240070338 + MIR SINE MIR 33 209 -53 450 287 169 30 chr1 2594306 2594672 -240069681 - HERVL LTR ERVL -3514 2140 1724 297 219 0 0 chr1 2595072 2595145 -240069208 + (TG)n Simple_repeat Simple_repeat 1 73 0 955 266 48 50 chr1 2595394 2595811 -240068542 + MLT1C LTR MaLR 52 467 0 259 363 9 9 chr1 2596219 2596332 -240068021 - HERVL LTR ERVL -5142 622 510 207 0 0 0 chr1 2596375 2596398 -240067955 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1732 134 57 132 chr1 2596580 2597004 -240067349 + MSTD LTR MaLR 1 392 -4 389 238 67 19 chr1 2597290 2597395 -240066958 + MLT1J LTR MaLR 109 218 -293 2242 93 3 10 chr1 2597774 2598085 -240066268 + AluSc SINE Alu 1 309 0 2216 127 116 10 chr1 2598406 2598793 -240065560 - MSTA LTR MaLR 0 428 1 1942 119 10 0 chr1 2598828 2599122 -240065231 - AluSx SINE Alu -15 297 1 243 258 67 22 chr1 2599798 2599887 -240064466 - L2 LINE L2 0 3272 3180 * 343 351 189 7 chr1 2599867 2600312 -240064041 - L2 LINE L2 -400 2914 2389 346 293 202 16 chr1 2600588 2600841 -240063512 - L2 LINE L2 -880 2434 2135 1369 173 50 92 chr1 2601011 2601392 -240062961 + MLT1A1 LTR MaLR 1 365 0 11961 173 42 22 chr1 2602529 2605139 -240059214 + L1 LINE L1 2353 5014 -1132 2192 110 3 3 chr1 2605385 2605693 -240058660 - AluSx SINE Alu -4 308 1 437 303 26 41 chr1 2605740 2605935 -240058418 + MIR SINE MIR 13 204 -58 402 115 0 0 chr1 2605967 2606028 -240058325 + (CA)n Simple_repeat Simple_repeat 2 62 0 2063 180 43 53 chr1 2606071 2606452 -240057901 + MLT1D LTR MaLR 21 397 -108 2195 112 7 0 chr1 2606452 2606757 -240057596 - AluSq SINE Alu -6 307 1 2063 180 43 53 chr1 2606757 2606865 -240057488 + MLT1D LTR MaLR 397 505 0 359 283 142 19 chr1 2608646 2608851 -240055502 - MIR SINE MIR -12 250 21 325 247 26 0 chr1 2609112 2609189 -240055164 + MLT1D LTR MaLR 40 118 -387 1384 128 0 68 chr1 2609189 2609424 -240054929 + AluJb SINE Alu 85 303 -9 1122 237 120 28 chr1 2609424 2609782 -240054571 + MLT1D LTR MaLR 107 497 -8 2150 91 3 13 chr1 2610142 2610450 -240053903 + AluY SINE Alu 1 305 -6 1045 239 90 35 chr1 2610971 2611339 -240053014 - MLT1B LTR MaLR -2 388 1 779 258 104 69 chr1 2612669 2613189 -240051164 - MER115 DNA AcHobo -1 692 107 2496 30 0 3 chr1 2613906 2614202 -240050151 - AluY SINE Alu -11 300 6 234 91 0 0 chr1 2614940 2614973 -240049380 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 275 343 0 12 chr1 2615745 2615917 -240048436 + (GGGTG)n Simple_repeat Simple_repeat 3 172 0 265 148 0 49 chr1 2616356 2616417 -240047936 - L1MC5 LINE L1 -48 7913 7856 2290 105 55 22 chr1 2616569 2616932 -240047421 - THE1C LTR MaLR 0 375 1 357 258 0 11 chr1 2616949 2617038 -240047315 + MIR SINE MIR 37 124 -138 317 235 133 15 chr1 2617038 2617234 -240047119 - L1MC5 LINE L1 -740 7221 7003 328 298 119 18 chr1 2617282 2617450 -240046903 - L1MEd LINE L1 -4956 1163 979 688 93 0 58 chr1 2617450 2617711 -240046642 + (TC)n Simple_repeat Simple_repeat 1 245 0 189 135 10 67 chr1 2617714 2617818 -240046535 + CT-rich Low_complexity Low_complexity 1 98 0 795 92 0 49 chr1 2617819 2618004 -240046349 + (TC)n Simple_repeat Simple_repeat 1 176 0 356 330 77 43 chr1 2618043 2618370 -240045983 - L1MEd LINE L1 -4941 1178 841 592 89 0 40 chr1 2618370 2618494 -240045859 + (TC)n Simple_repeat Simple_repeat 1 119 0 654 289 87 40 chr1 2618536 2619003 -240045350 - L1MC4 LINE L1 -824 7069 6481 33 43 0 0 chr1 2619206 2619253 -240045100 + AT_rich Low_complexity Low_complexity 1 47 0 1988 113 3 0 chr1 2619441 2619760 -240044593 - AluSx SINE Alu 0 320 1 295 200 24 24 chr1 2619795 2619880 -240044473 - L1ME2 LINE L1 -1 6163 6079 2313 158 40 37 chr1 2619881 2620311 -240044042 - Tigger2a DNA MER2_type -1 433 3 2539 236 72 7 chr1 2620430 2621390 -240042963 - L1ME2 LINE L1 -104 6060 5036 989 218 9 24 chr1 2621390 2621601 -240042752 - MER3 DNA MER1_type 0 209 2 669 241 109 51 chr1 2621602 2621913 -240042440 - L1ME2 LINE L1 -1103 5043 4715 1641 260 36 4 chr1 2621913 2622466 -240041887 - L1ME2 LINE L1 -2513 3633 3063 2033 32 4 0 chr1 2622705 2622953 -240041400 + L1PA3 LINE L1 5904 6152 -3 244 200 200 0 chr1 2623029 2623089 -240041264 - L2 LINE L2 -1 3312 3241 476 293 58 22 chr1 2624447 2624671 -240039682 - MIR SINE MIR -16 246 15 307 123 62 0 chr1 2624674 2624755 -240039598 + CT-rich Low_complexity Low_complexity 4 89 0 236 219 0 14 chr1 2624861 2624934 -240039419 + CT-rich Low_complexity Low_complexity 4 75 0 513 190 114 51 chr1 2626794 2626952 -240037401 + MIR SINE MIR 81 248 -14 487 191 6 6 chr1 2627521 2627694 -240036659 + (TG)n Simple_repeat Simple_repeat 2 174 0 195 146 0 0 chr1 2627721 2627762 -240036591 + (TG)n Simple_repeat Simple_repeat 2 42 0 310 281 62 25 chr1 2628246 2628406 -240035947 + LTR41 LTR ERVL 1 166 -607 307 234 31 26 chr1 2629606 2629723 -240034630 + LTR41 LTR ERVL 658 795 0 334 288 42 17 chr1 2629999 2630117 -240034236 - MIR3 SINE MIR -75 133 13 2355 99 8 8 chr1 2630196 2630550 -240033803 + THE1A LTR MaLR 2 355 0 2234 107 3 0 chr1 2630631 2630922 -240033431 + AluSp SINE Alu 1 292 -21 193 200 25 0 chr1 2631224 2631264 -240033089 + MER5A DNA MER1_type 15 55 -134 238 272 0 58 chr1 2631732 2631835 -240032518 + L1ME4a LINE L1 5975 6071 -50 1539 226 19 14 chr1 2632884 2633247 -240031106 + MLT1A1 LTR MaLR 1 365 0 230 230 126 46 chr1 2633311 2633398 -240030955 - L2 LINE L2 -4 3268 3175 5297 253 53 35 chr1 2634083 2634288 -240030065 - L1MEc LINE L1 -4158 2238 2038 2279 148 25 39 chr1 2634288 2634672 -240029681 + MSTA LTR MaLR 3 382 -46 2264 95 0 10 chr1 2634672 2634966 -240029387 - AluSc SINE Alu -18 291 1 2279 148 25 39 chr1 2634966 2635013 -240029340 + MSTA LTR MaLR 382 428 0 5297 253 53 35 chr1 2635013 2635514 -240028839 - L1MEc LINE L1 -4358 2038 1548 2113 146 7 0 chr1 2635514 2635823 -240028530 - AluJb SINE Alu -1 311 1 5297 253 53 35 chr1 2635823 2635860 -240028493 - L1MEc LINE L1 -4848 1548 1513 2261 119 0 3 chr1 2635860 2636171 -240028182 - AluSx SINE Alu -2 310 1 5297 253 53 35 chr1 2636171 2637394 -240026959 - L1MEc LINE L1 -4883 1513 234 608 271 133 28 chr1 2638341 2638559 -240025794 - MIR SINE MIR -6 256 16 420 221 43 80 chr1 2638747 2638910 -240025443 - L2 LINE L2 -1 3312 3156 204 40 0 0 chr1 2639851 2639876 -240024477 + (TAGG)n Simple_repeat Simple_repeat 2 26 0 978 158 7 7 chr1 2639923 2640498 -240023855 + (TGGA)n Simple_repeat Simple_repeat 1 575 0 439 279 99 12 chr1 2640585 2640746 -240023607 + MER96 DNA MER1_type? 1 175 0 358 280 0 28 chr1 2640930 2641037 -240023316 + MIR3 SINE MIR 53 156 -52 207 286 81 103 chr1 2641227 2641461 -240022892 - L2 LINE L2 -76 3196 2968 2503 200 44 49 chr1 2642383 2642998 -240021355 - MLT1E1 LTR MaLR 0 654 43 491 289 86 5 chr1 2643143 2643340 -240021013 + MIR SINE MIR 40 252 -10 300 153 17 0 chr1 2643665 2643724 -240020629 + L1ME4a LINE L1 6062 6121 0 350 225 22 0 chr1 2645591 2645680 -240018673 + MER5A DNA MER1_type 16 106 -83 218 244 114 41 chr1 2645894 2646017 -240018336 + L2 LINE L2 3141 3272 0 386 293 60 0 chr1 2647398 2647531 -240016822 + MLT1I LTR MaLR 8 148 -261 284 226 0 0 chr1 2647518 2647580 -240016773 + MLT1I LTR MaLR 87 148 -261 * 349 251 55 86 chr1 2647567 2647730 -240016623 + MLT1I LTR MaLR 87 244 -165 234 293 13 0 chr1 2647775 2647850 -240016503 + MLT1I LTR MaLR 334 409 0 288 0 0 0 chr1 2649583 2649615 -240014738 + (TG)n Simple_repeat Simple_repeat 1 32 0 204 40 0 0 chr1 2649614 2649639 -240014714 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 195 268 0 0 chr1 2649936 2650033 -240014320 + (TG)n Simple_repeat Simple_repeat 1 97 0 220 300 98 19 chr1 2650112 2650290 -240014063 + MIR SINE MIR 19 218 -44 674 234 188 15 chr1 2651707 2652054 -240012299 + MLT1B LTR MaLR 1 384 -6 1912 85 32 3 chr1 2652414 2652696 -240011657 + L1PB1 LINE L1 5861 6150 -1 638 213 101 43 chr1 2652842 2653049 -240011304 - MER20 DNA MER1_type 0 219 1 256 264 0 0 chr1 2653881 2653934 -240010419 + L2 LINE L2 3256 3308 -5 198 236 0 0 chr1 2654525 2654580 -240009773 + (CA)n Simple_repeat Simple_repeat 1 55 0 8642 168 77 88 chr1 2655268 2655674 -240008679 + L1MC3 LINE L1 5416 5825 -1960 1836 156 7 14 chr1 2655674 2655962 -240008391 + AluJb SINE Alu 13 298 -14 2325 121 0 0 chr1 2655964 2656270 -240008083 + AluSg SINE Alu 1 306 -4 1460 151 9 22 chr1 2656278 2656510 -240007843 + AluJo SINE Alu 63 291 -21 8642 168 77 88 chr1 2656510 2657193 -240007160 + L1MC3 LINE L1 5833 6522 -1263 577 25 25 0 chr1 2657193 2657272 -240007081 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 8642 168 77 88 chr1 2657272 2657725 -240006628 + L1MC3 LINE L1 6522 6978 -807 341 97 0 81 chr1 2657725 2657787 -240006566 + Alu SINE Alu 242 298 -4 8642 168 77 88 chr1 2657787 2658558 -240005795 + L1MC3 LINE L1 6978 7778 -7 717 246 80 34 chr1 2658631 2658990 -240005363 + MLT1A1 LTR MaLR 1 323 -42 1375 93 0 0 chr1 2659000 2659172 -240005181 - AluSp SINE Alu -10 303 132 1028 74 0 0 chr1 2659322 2659443 -240004910 - AluSp SINE Alu -192 121 1 200 355 84 0 chr1 2659992 2660099 -240004254 - MIR SINE MIR -55 207 92 242 192 0 19 chr1 2660717 2660769 -240003584 - MLT1E3 LTR MaLR -295 329 279 1551 258 28 17 chr1 2660840 2660928 -240003425 + L1M4 LINE L1 3850 3936 -2210 1021 196 25 53 chr1 2660928 2661173 -240003180 + MER8 DNA MER2_type 1 238 -1 1551 258 28 17 chr1 2661173 2661613 -240002740 + L1M4 LINE L1 3936 4387 -1759 2110 127 3 3 chr1 2661613 2661912 -240002441 + AluSq SINE Alu 1 299 -14 748 138 58 0 chr1 2661916 2662054 -240002299 - L1MA9 LINE L1 -97 6215 6070 * 584 171 0 0 chr1 2662032 2662137 -240002216 + L1MA9 LINE L1 6203 6307 -5 * 835 231 34 15 chr1 2662142 2662406 -240001947 + L1M4 LINE L1 4374 4642 -1504 1118 171 0 0 chr1 2662407 2662583 -240001770 + AluSg/x SINE Alu 130 305 -7 2173 126 17 0 chr1 2662641 2662942 -240001411 + AluSq SINE Alu 1 306 -7 921 140 11 11 chr1 2662952 2663131 -240001222 + GA-rich Low_complexity Low_complexity 1 179 0 369 0 0 0 chr1 2663131 2663172 -240001181 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 1530 259 42 18 chr1 2663172 2663721 -240000632 + L1M4 LINE L1 4694 5255 -891 1888 140 50 13 chr1 2663947 2663980 -240000373 - L1MB3 LINE L1 0 6183 6153 2501 81 3 0 chr1 2663980 2664287 -240000066 - AluSp SINE Alu -5 308 1 1888 140 50 13 chr1 2664287 2664631 -239999722 - L1MB3 LINE L1 -30 6153 5792 2162 125 3 10 chr1 2664873 2665186 -239999167 + AluSx SINE Alu 1 311 -1 2566 84 0 0 chr1 2665220 2665531 -239998822 + AluY SINE Alu 1 311 0 435 231 35 42 chr1 2666241 2666384 -239997969 + MER5A DNA MER1_type 20 161 -28 750 208 138 103 chr1 2667776 2668088 -239996265 + MLT1J LTR MaLR 8 330 -181 1680 220 111 5 chr1 2668594 2669016 -239995337 + MLT1C LTR MaLR 1 467 0 262 359 0 0 chr1 2669109 2669212 -239995141 + (TGGA)n Simple_repeat Simple_repeat 3 105 0 483 331 68 51 chr1 2671443 2671857 -239992496 + MLT1K LTR MaLR 168 588 0 195 129 0 0 chr1 2671908 2671939 -239992414 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 * 664 111 47 23 chr1 2671936 2672107 -239992246 + GA-rich Low_complexity Low_complexity 2 176 0 221 274 17 17 chr1 2672630 2672712 -239991641 - MIR SINE MIR -122 86 5 216 284 74 0 chr1 2673716 2673797 -239990556 - MIR3 SINE MIR -8 200 114 214 313 60 0 chr1 2674223 2674306 -239990047 + L2 LINE L2 3157 3244 -28 187 256 100 22 chr1 2675946 2676036 -239988317 + MIR3 SINE MIR 64 160 -48 5631 91 17 18 chr1 2676136 2677001 -239987352 + L1PA11 LINE L1 5310 6170 -4 446 311 111 5 chr1 2677025 2677215 -239987138 - MIR SINE MIR -50 212 3 1690 201 117 47 chr1 2677235 2677687 -239986666 - MLT1D LTR MaLR 0 505 22 233 283 88 9 chr1 2677752 2677865 -239986488 - MIR SINE MIR -113 149 28 1698 201 162 16 chr1 2678090 2678577 -239985776 - MER74A LTR ERVL 0 558 1 701 246 29 6 chr1 2678608 2678783 -239985570 - MER91A DNA MER1_type 0 196 18 2140 108 0 0 chr1 2679952 2680229 -239984124 + AluSg SINE Alu 18 294 -16 236 256 67 22 chr1 2681423 2681513 -239982840 - MIR SINE MIR -81 181 88 205 31 0 0 chr1 2682018 2682050 -239982303 + L2 LINE L2 3028 3059 -213 879 310 103 13 chr1 2683411 2683798 -239980555 + MLT1K LTR MaLR 39 460 -128 701 171 0 23 chr1 2683835 2683964 -239980389 - FLAM_C SINE Alu -16 127 2 321 26 0 0 chr1 2683971 2684009 -239980344 + (TA)n Simple_repeat Simple_repeat 2 39 0 387 123 0 0 chr1 2684009 2684066 -239980287 - FAM SINE Alu -7 172 116 1101 99 0 14 chr1 2684071 2684212 -239980141 - AluSq/x SINE Alu -173 139 1 311 238 12 12 chr1 2684434 2684518 -239979835 - MER96 DNA MER1_type? -91 84 1 2507 143 11 19 chr1 2684603 2685073 -239979280 - L1MA8 LINE L1 -12 6279 5814 334 228 0 25 chr1 2685074 2685153 -239979200 - AluSp/q SINE Alu -1 302 226 475 69 14 0 chr1 2685158 2685230 -239979123 + MLT2A2 LTR ERVL 1 73 -380 * 2152 131 38 0 chr1 2685217 2685561 -239978792 + THE1B LTR MaLR 6 362 -2 1228 147 0 6 chr1 2685561 2685738 -239978615 - AluJb SINE Alu -96 216 41 1247 152 13 5 chr1 2685738 2685962 -239978391 - L1MA8 LINE L1 -479 5821 5596 240 336 59 8 chr1 2685972 2686091 -239978262 + MIR3 SINE MIR 77 201 -7 230 211 56 44 chr1 2686360 2686450 -239977903 - L1P LINE L1 -5450 696 606 217 104 62 21 chr1 2688600 2688648 -239975705 + A-rich Low_complexity Low_complexity 3 52 0 202 277 46 0 chr1 2688906 2688971 -239975382 + MIR SINE MIR 98 165 -97 259 282 15 0 chr1 2689825 2689905 -239974448 - MIR SINE MIR -92 116 36 2093 195 24 9 chr1 2690167 2690624 -239973729 + MLT1C LTR MaLR 4 467 0 352 267 62 23 chr1 2691049 2691225 -239973128 + MLT1I LTR MaLR 224 406 -3 550 285 57 0 chr1 2691810 2692003 -239972350 + MIR SINE MIR 8 211 -51 351 329 51 0 chr1 2692011 2692148 -239972205 - MIR SINE MIR -104 158 15 2082 154 12 51 chr1 2692869 2693279 -239971074 - MSTD LTR MaLR -2 394 1 670 172 0 14 chr1 2693550 2693695 -239970658 + CT-rich Low_complexity Low_complexity 2 144 0 2302 246 73 14 chr1 2694162 2694868 -239969485 - L1MEc LINE L1 -3152 3063 2330 225 0 0 0 chr1 2694868 2694893 -239969460 + (CA)n Simple_repeat Simple_repeat 2 26 0 2302 246 73 14 chr1 2694893 2695224 -239969129 - L1MEc LINE L1 -3885 2330 2020 666 90 0 10 chr1 2695225 2695325 -239969028 + L1PA5 LINE L1 6048 6146 -8 840 240 49 12 chr1 2695359 2695590 -239968763 - L1ME LINE L1 -649 5517 5275 2160 136 0 0 chr1 2695590 2695885 -239968468 + AluSx SINE Alu 1 295 -17 840 240 49 12 chr1 2695885 2695899 -239968454 - L1ME LINE L1 -891 5275 5263 2165 239 42 41 chr1 2695912 2696811 -239967542 - L1ME LINE L1 -2775 3371 2472 3276 194 34 26 chr1 2698109 2698379 -239965974 - L1MB7 LINE L1 -10 6174 5908 2079 210 15 23 chr1 2698379 2698850 -239965503 + MLT1C LTR MaLR 1 467 0 3276 194 34 26 chr1 2698850 2699306 -239965047 - L1MB7 LINE L1 -276 5908 5442 2282 129 0 0 chr1 2700018 2700329 -239964024 + AluSx SINE Alu 1 311 -1 294 356 36 12 chr1 2704240 2704565 -239959788 - L2 LINE L2 -231 3082 2752 1293 238 80 28 chr1 2704567 2704967 -239959386 - MLT1C LTR MaLR -2 465 45 * 2780 145 11 11 chr1 2704963 2705439 -239958914 - MER31A LTR ERV1 -8 477 2 675 261 97 13 chr1 2705479 2705717 -239958636 - L2 LINE L2 -556 2758 2501 2026 96 0 0 chr1 2706965 2707214 -239957139 + AluSx SINE Alu 1 249 -63 374 326 116 6 chr1 2707842 2708014 -239956339 - L1ME4a LINE L1 -236 5885 5695 186 43 0 0 chr1 2708313 2708336 -239956017 + (TG)n Simple_repeat Simple_repeat 2 24 0 246 261 0 0 chr1 2709511 2709576 -239954777 + L1ME1 LINE L1 37 101 -6295 613 152 53 94 chr1 2709583 2709754 -239954599 - MLT2B1 LTR ERVL -2 518 355 1342 263 79 22 chr1 2709771 2710265 -239954088 + L1ME1 LINE L1 121 642 -5754 811 218 45 30 chr1 2710270 2710536 -239953817 + L1ME1 LINE L1 3118 3387 -2828 241 263 0 0 chr1 2710534 2710591 -239953762 + L1ME1 LINE L1 4342 4398 -1817 * 3198 223 33 61 chr1 2710600 2710886 -239953467 + L1ME1 LINE L1 4372 4664 -1571 2279 112 0 10 chr1 2710886 2711189 -239953164 + AluSx SINE Alu 1 300 -12 3198 223 33 61 chr1 2711189 2712728 -239951625 + L1ME1 LINE L1 4664 6138 -97 1864 158 25 51 chr1 2712728 2713121 -239951232 - MLT1B LTR MaLR 0 390 8 295 183 0 0 chr1 2713122 2713182 -239951171 + L1MA10 LINE L1 6268 6327 -7 519 306 16 0 chr1 2714028 2714149 -239950204 + L2 LINE L2 3191 3313 0 228 333 152 24 chr1 2715588 2715753 -239948600 - L3 LINE CR1 -57 1520 1335 197 397 44 7 chr1 2715858 2715994 -239948359 - L3 LINE CR1 -437 1140 1000 4330 86 26 0 chr1 2716072 2716657 -239947696 - L1PA10 LINE L1 -11 6157 5558 2229 98 0 19 chr1 2716657 2717225 -239947128 + L1PA10 LINE L1 5019 5573 -595 22 0 0 0 chr1 2718624 2718646 -239945707 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr1 2718716 2718772 -239945581 + AT_rich Low_complexity Low_complexity 1 56 0 404 297 36 18 chr1 2718832 2719051 -239945302 - L1MD2 LINE L1 -5 6354 6132 231 173 0 0 chr1 2719075 2719127 -239945226 + (TG)n Simple_repeat Simple_repeat 1 52 0 306 269 0 0 chr1 2719159 2719315 -239945038 + (TG)n Simple_repeat Simple_repeat 1 156 0 264 275 0 0 chr1 2719343 2719503 -239944850 + (TG)n Simple_repeat Simple_repeat 1 160 0 354 269 0 0 chr1 2719538 2719759 -239944594 + (TG)n Simple_repeat Simple_repeat 1 221 0 246 253 0 0 chr1 2719777 2719876 -239944477 + (TG)n Simple_repeat Simple_repeat 2 100 0 307 263 34 34 chr1 2719951 2720069 -239944284 - L1MD2 LINE L1 -196 6163 6046 220 269 93 46 chr1 2721442 2721550 -239942803 + L2 LINE L2 3200 3312 -1 238 388 10 0 chr1 2722330 2722428 -239941925 + MIR SINE MIR 164 262 0 1653 214 30 42 chr1 2722605 2722932 -239941421 + MLT1C LTR MaLR 1 322 -145 3439 150 2 11 chr1 2722932 2723464 -239940889 - MER1A DNA MER1_type 0 527 1 1653 214 30 42 chr1 2723464 2723609 -239940744 + MLT1C LTR MaLR 322 467 0 188 235 0 0 chr1 2723660 2723694 -239940659 - L2 LINE L2 -74 3198 3165 443 261 0 0 chr1 2725114 2725182 -239939171 - L2 LINE L2 -24 3289 3219 2039 124 31 7 chr1 2725182 2725473 -239938880 + AluSx SINE Alu 1 298 -14 443 261 0 0 chr1 2725473 2725496 -239938857 - L2 LINE L2 -93 3220 3198 2084 129 99 40 chr1 2726003 2726047 -239938306 - MSTA LTR MaLR 0 428 388 2089 108 47 0 chr1 2726047 2726343 -239938010 + AluSx SINE Alu 1 310 -2 2084 129 99 40 chr1 2726343 2726702 -239937651 - MSTA LTR MaLR -40 388 1 376 329 17 43 chr1 2726702 2726933 -239937420 - L1MD2 LINE L1 -2049 5759 5535 6879 61 10 7 chr1 2726991 2728329 -239936024 + L1PA7 LINE L1 4813 6153 -1 207 133 0 0 chr1 2728442 2728472 -239935881 - L2 LINE L2 -13 3259 3230 487 160 191 0 chr1 2728532 2728663 -239935690 + Charlie5 DNA MER1_type 2359 2514 -98 23 54 0 0 chr1 2728674 2728711 -239935642 + AT_rich Low_complexity Low_complexity 1 37 0 1061 86 7 13 chr1 2728729 2728881 -239935472 + L1PA8 LINE L1 6019 6169 -3 448 257 155 16 chr1 2729723 2729921 -239934432 + L1MC3 LINE L1 6096 7775 -10 2504 117 16 19 chr1 2730965 2731341 -239933012 + THE1C LTR MaLR 1 375 0 207 313 12 0 chr1 2732156 2732239 -239932114 - L2 LINE L2 -28 3285 3202 184 279 73 15 chr1 2732647 2732715 -239931638 - L2 LINE L2 -335 2978 2907 1687 225 67 23 chr1 2732753 2733272 -239931081 + MER77 LTR ERV1 54 595 -10 183 314 0 43 chr1 2733368 2733438 -239930915 - L2 LINE L2 -954 2360 2294 927 230 15 0 chr1 2733863 2734067 -239930286 - MER58A DNA MER1_type -17 207 1 367 341 47 12 chr1 2734295 2734465 -239929888 - L3 LINE CR1 -693 884 709 487 318 59 25 chr1 2734478 2734714 -239929639 + MIR SINE MIR 4 247 -15 277 289 0 31 chr1 2734750 2734847 -239929506 - L3 LINE CR1 -901 676 583 189 314 48 19 chr1 2735152 2735257 -239929096 - MIR SINE MIR -23 239 132 354 299 10 0 chr1 2735258 2735355 -239928998 + MIR SINE MIR 118 215 -47 227 314 102 58 chr1 2736454 2736591 -239927762 + MIR SINE MIR 29 171 -91 498 315 118 5 chr1 2737307 2737510 -239926843 - MIR SINE MIR -5 257 32 251 316 171 0 chr1 2737658 2737810 -239926543 - MIR SINE MIR -20 242 65 407 63 16 0 chr1 2738512 2738575 -239925778 + (GA)n Simple_repeat Simple_repeat 1 64 0 234 91 0 0 chr1 2739343 2739376 -239924977 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 6245 29 10 0 chr1 2739443 2740336 -239924017 + L1PA4 LINE L1 4813 6171 0 594 305 34 67 chr1 2740338 2740833 -239923520 + L1MC4a LINE L1 5425 5903 -1905 270 308 26 13 chr1 2742131 2742209 -239922144 - MIR SINE MIR -91 171 93 1656 254 32 22 chr1 2742211 2742716 -239921637 + LTR40a LTR ERVL 7 516 -3 196 212 35 129 chr1 2742719 2742804 -239921549 - MIR SINE MIR -108 100 24 290 236 11 101 chr1 2743184 2743273 -239921080 + L2 LINE L2 3209 3289 -24 306 129 0 0 chr1 2743524 2743586 -239920767 + (TGAG)n Simple_repeat Simple_repeat 2 63 0 199 283 44 44 chr1 2743742 2743855 -239920498 - MIR SINE MIR -77 131 19 5253 140 17 10 chr1 2744481 2745518 -239918835 - L1PA16 LINE L1 -16 6150 5100 26 0 0 0 chr1 2745544 2745570 -239918783 + AT_rich Low_complexity Low_complexity 1 26 0 3968 20 7 2 chr1 2745585 2746067 -239918286 - L1PA2 LINE L1 0 6155 5693 3109 31 3 0 chr1 2746067 2746448 -239917905 + L1PA2 LINE L1 5345 5726 -429 343 299 68 47 chr1 2748652 2748886 -239915467 + L1ME LINE L1 5353 5591 -530 780 248 39 60 chr1 2748886 2749217 -239915136 - MLT1I LTR MaLR -2 407 84 483 63 0 0 chr1 2749231 2749294 -239915059 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 213 121 0 0 chr1 2749300 2749333 -239915020 + (GA)n Simple_repeat Simple_repeat 2 34 0 300 82 20 20 chr1 2749333 2749382 -239914971 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 599 210 4 4 chr1 2749382 2749620 -239914733 + (TAGA)n Simple_repeat Simple_repeat 1 238 0 186 292 22 56 chr1 2749645 2749670 -239914683 + L2 LINE L2 3195 3219 -94 1497 135 154 34 chr1 2749670 2749936 -239914417 - AluSg SINE Alu -2 298 1 186 292 22 56 chr1 2749936 2749999 -239914354 + L2 LINE L2 3219 3280 -33 680 108 67 0 chr1 2750012 2750455 -239913898 + (TGGA)n Simple_repeat Simple_repeat 1 472 0 644 108 52 8 chr1 2750620 2750872 -239913481 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 180 349 23 23 chr1 2750903 2750989 -239913364 + L2 LINE L2 3195 3280 -33 555 102 66 0 chr1 2751002 2751139 -239913214 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 245 169 17 0 chr1 2751396 2751455 -239912898 + CT-rich Low_complexity Low_complexity 1 60 0 283 304 47 58 chr1 2751612 2751783 -239912570 - L2 LINE L2 -159 3113 2945 509 254 199 50 chr1 2751809 2752171 -239912182 - MLT1J2 LTR MaLR 0 450 35 188 295 247 13 chr1 2752553 2752926 -239911427 - L2 LINE L2 0 3272 2813 740 165 104 0 chr1 2753504 2753668 -239910685 - MER105 DNA DNA -7 197 17 268 317 96 54 chr1 2754044 2754211 -239910142 + MER5A DNA MER1_type 14 187 -2 488 355 0 22 chr1 2754358 2754541 -239909812 + (CA)n Simple_repeat Simple_repeat 2 180 0 1432 131 25 0 chr1 2755484 2755720 -239908633 + LTR19B LTR ERV1 339 580 0 416 233 16 0 chr1 2757049 2757178 -239907175 + CT-rich Low_complexity Low_complexity 1 131 0 399 276 146 1 chr1 2759441 2759616 -239904737 - MIR SINE MIR -16 246 49 196 236 125 0 chr1 2760652 2760724 -239903629 + L2 LINE L2 3189 3269 -3 490 249 61 36 chr1 2761059 2761224 -239903129 + MIR SINE MIR 27 195 -67 543 295 61 47 chr1 2761224 2761299 -239903054 - MLT1I LTR MaLR 0 409 337 2129 122 0 39 chr1 2761299 2761611 -239902742 - AluY SINE Alu -11 300 1 543 295 61 47 chr1 2761611 2761813 -239902540 - MLT1I LTR MaLR -72 337 128 2375 113 0 0 chr1 2761837 2762139 -239902214 + AluSx SINE Alu 1 302 -10 310 281 62 25 chr1 2762298 2762458 -239901895 + LTR41 LTR ERVL 1 166 -607 307 234 31 26 chr1 2763592 2763709 -239900644 + LTR41 LTR ERVL 658 795 0 348 294 34 17 chr1 2763985 2764104 -239900249 - MIR3 SINE MIR -75 133 13 2384 93 8 8 chr1 2764183 2764537 -239899816 + THE1A LTR MaLR 2 355 0 2211 110 3 0 chr1 2764617 2764908 -239899445 + AluSp SINE Alu 1 292 -21 193 200 25 0 chr1 2765210 2765250 -239899103 + MER5A DNA MER1_type 15 55 -134 238 272 0 58 chr1 2765718 2765821 -239898532 + L1ME4a LINE L1 5975 6071 -50 1539 226 19 14 chr1 2766870 2767233 -239897120 + MLT1A1 LTR MaLR 1 365 0 230 230 126 46 chr1 2767297 2767384 -239896969 - L2 LINE L2 -4 3268 3175 5186 251 53 44 chr1 2768069 2768274 -239896079 - L1MEc LINE L1 -4158 2238 2036 2279 148 25 39 chr1 2768274 2768658 -239895695 + MSTA LTR MaLR 3 382 -46 2303 92 0 10 chr1 2768658 2768953 -239895400 - AluSc SINE Alu -17 292 1 2279 148 25 39 chr1 2768953 2769000 -239895353 + MSTA LTR MaLR 382 428 0 5186 251 53 44 chr1 2769000 2769519 -239894834 - L1MEc LINE L1 -4360 2036 1523 2159 139 7 0 chr1 2769519 2769829 -239894524 - AluJb SINE Alu 0 312 1 5186 251 53 44 chr1 2769829 2769866 -239894487 - L1MEc LINE L1 -4873 1523 1488 2258 122 0 3 chr1 2769866 2770178 -239894175 - AluSx SINE Alu -1 311 1 5186 251 53 44 chr1 2770178 2771401 -239892952 - L1MEc LINE L1 -4908 1488 234 608 271 133 28 chr1 2772348 2772566 -239891787 - MIR SINE MIR -6 256 16 420 221 43 80 chr1 2772754 2772917 -239891436 - L2 LINE L2 -1 3312 3156 204 40 0 0 chr1 2773858 2773883 -239890470 + (TAGG)n Simple_repeat Simple_repeat 2 26 0 999 157 7 7 chr1 2773930 2774505 -239889848 + (TGGA)n Simple_repeat Simple_repeat 1 575 0 414 290 93 12 chr1 2774592 2774754 -239889599 + MER96 DNA MER1_type? 1 175 0 358 280 0 28 chr1 2774938 2775045 -239889308 + MIR3 SINE MIR 53 156 -52 207 286 81 103 chr1 2775235 2775469 -239888884 - L2 LINE L2 -76 3196 2968 2471 203 44 49 chr1 2776391 2777006 -239887347 - MLT1E1 LTR MaLR 0 654 43 476 294 86 5 chr1 2777151 2777348 -239887005 + MIR SINE MIR 40 252 -10 300 153 17 0 chr1 2777673 2777732 -239886621 + L1ME4a LINE L1 6062 6121 0 350 225 22 0 chr1 2779599 2779688 -239884665 + MER5A DNA MER1_type 16 106 -83 218 244 114 41 chr1 2779902 2780025 -239884328 + L2 LINE L2 3141 3272 0 386 293 60 0 chr1 2781406 2781539 -239882814 + MLT1I LTR MaLR 8 148 -261 284 226 0 0 chr1 2781526 2781588 -239882765 + MLT1I LTR MaLR 87 148 -261 * 349 251 55 86 chr1 2781575 2781738 -239882615 + MLT1I LTR MaLR 87 244 -165 234 293 13 0 chr1 2781783 2781858 -239882495 + MLT1I LTR MaLR 334 409 0 315 0 0 0 chr1 2783591 2783626 -239880727 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr1 2783627 2783649 -239880704 + (GA)n Simple_repeat Simple_repeat 2 23 0 195 268 0 0 chr1 2783946 2784043 -239880310 + (TG)n Simple_repeat Simple_repeat 1 97 0 237 292 98 19 chr1 2784122 2784300 -239880053 + MIR SINE MIR 19 218 -44 652 238 187 15 chr1 2785717 2786064 -239878289 + MLT1B LTR MaLR 1 384 -6 1912 85 32 3 chr1 2786423 2786705 -239877648 + L1PB1 LINE L1 5861 6150 -1 638 213 101 43 chr1 2786851 2787058 -239877295 - MER20 DNA MER1_type 0 219 1 256 264 0 0 chr1 2787890 2787943 -239876410 + L2 LINE L2 3215 3267 -5 198 236 0 0 chr1 2788534 2788589 -239875764 + (CA)n Simple_repeat Simple_repeat 1 55 0 8672 168 77 86 chr1 2789277 2789683 -239874670 + L1MC3 LINE L1 5416 5824 -1961 1836 156 7 14 chr1 2789683 2789971 -239874382 + AluJb SINE Alu 13 298 -14 2283 123 3 0 chr1 2789973 2790282 -239874071 + AluSg SINE Alu 1 310 0 1460 151 9 22 chr1 2790285 2790517 -239873836 + AluJo SINE Alu 63 291 -21 8672 168 77 86 chr1 2790517 2791200 -239873153 + L1MC3 LINE L1 5827 6515 -1270 505 28 28 0 chr1 2791200 2791271 -239873082 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 8672 168 77 86 chr1 2791271 2791724 -239872629 + L1MC3 LINE L1 6515 6970 -815 341 97 0 81 chr1 2791724 2791786 -239872567 + Alu SINE Alu 242 298 -4 8672 168 77 86 chr1 2791786 2792557 -239871796 + L1MC3 LINE L1 6970 7778 -7 717 246 80 34 chr1 2792630 2792989 -239871364 + MLT1A1 LTR MaLR 1 323 -42 1383 92 0 0 chr1 2792999 2793172 -239871181 - AluSp SINE Alu -9 304 132 1028 74 0 0 chr1 2793322 2793443 -239870910 - AluSp SINE Alu -192 121 1 200 355 84 0 chr1 2793992 2794099 -239870254 - MIR SINE MIR -55 207 92 242 192 0 19 chr1 2794717 2794769 -239869584 - MLT1E3 LTR MaLR -295 329 279 1551 258 28 17 chr1 2794840 2794928 -239869425 + L1M4 LINE L1 3850 3936 -2210 1021 196 25 53 chr1 2794928 2795173 -239869180 + MER8 DNA MER2_type 1 238 -1 1551 258 28 17 chr1 2795173 2795613 -239868740 + L1M4 LINE L1 3936 4387 -1759 2118 127 3 3 chr1 2795613 2795913 -239868440 + AluSq SINE Alu 1 300 -13 748 138 58 0 chr1 2795917 2796055 -239868298 - L1MA9 LINE L1 -97 6215 6070 * 584 171 0 0 chr1 2796033 2796138 -239868215 + L1MA9 LINE L1 6203 6307 -5 * 842 227 34 15 chr1 2796143 2796407 -239867946 + L1M4 LINE L1 4374 4642 -1504 1144 165 0 0 chr1 2796408 2796584 -239867769 + AluSg/x SINE Alu 128 303 -7 1663 261 35 23 chr1 2796584 2796643 -239867710 + L1M4 LINE L1 4648 4705 -1441 2167 130 17 0 chr1 2796643 2796944 -239867409 + AluSq SINE Alu 1 306 -7 1088 79 22 11 chr1 2796954 2797132 -239867221 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 735 62 0 0 chr1 2797132 2797229 -239867124 + (GGAA)n Simple_repeat Simple_repeat 1 97 0 1663 261 35 23 chr1 2797229 2797758 -239866595 + L1M4 LINE L1 4712 5255 -891 379 84 0 42 chr1 2798021 2798115 -239866238 - AluSp/q SINE Alu 0 303 243 241 173 0 67 chr1 2998422 2998497 -239665856 + GA-rich Low_complexity Low_complexity 3 72 0 328 282 42 33 chr1 2998573 2998786 -239665567 - MER113 DNA MER1_type? -298 223 9 407 130 0 130 chr1 2999505 2999570 -239664783 + MADE1 DNA Mariner 1 52 -28 2452 67 0 0 chr1 2999570 2999870 -239664483 - AluY SINE Alu -11 300 1 407 130 0 130 chr1 2999870 2999896 -239664457 + MADE1 DNA Mariner 52 80 0 609 244 38 38 chr1 3000283 3000521 -239663832 + LTR37B LTR ERV1 204 441 -27 25 0 0 0 chr1 3001260 3001285 -239663068 + GC_rich Low_complexity Low_complexity 1 25 0 721 278 28 0 chr1 3001310 3001522 -239662831 - MIR SINE MIR 0 262 45 3875 134 17 26 chr1 3003818 3004068 -239660285 + MER50 LTR ERV1 1 252 -482 2392 107 13 43 chr1 3004068 3004443 -239659910 + THE1B LTR MaLR 1 364 0 3875 134 17 26 chr1 3004443 3004910 -239659443 + MER50 LTR ERV1 252 711 -23 1027 257 68 31 chr1 3005268 3005725 -239658628 - MLT1H LTR MaLR 0 549 1 480 351 53 1 chr1 3005814 3006132 -239658221 + ERVL LTR ERVL 1899 2234 -2762 285 352 61 19 chr1 3006237 3006663 -239657690 + ERVL LTR ERVL 2422 2885 -2879 1785 129 58 0 chr1 3006670 3006948 -239657405 + AluSx SINE Alu 18 311 -1 198 103 0 0 chr1 3006948 3006977 -239657376 + (GA)n Simple_repeat Simple_repeat 1 29 0 792 369 38 19 chr1 3007243 3008029 -239656324 + ERVL LTR ERVL 3066 3866 -1898 494 296 32 16 chr1 3008143 3008332 -239656021 + ERVL LTR ERVL 4049 4240 -1524 529 305 80 5 chr1 3008431 3008644 -239655709 + ERVL LTR ERVL 4385 4613 -1151 2484 93 49 60 chr1 3008888 3008911 -239655442 + MER4B LTR ERV1 1 23 -587 2254 114 0 0 chr1 3008911 3009218 -239655135 + AluSq SINE Alu 1 307 -6 2484 93 49 60 chr1 3009218 3009460 -239654893 + MER4B LTR ERV1 23 261 -349 2102 117 13 0 chr1 3009460 3009760 -239654593 + AluSx SINE Alu 1 304 -8 2484 93 49 60 chr1 3009760 3009979 -239654374 + MER4B LTR ERV1 261 481 -129 6849 26 5 1 chr1 3009979 3011545 -239652808 + L1PA3 LINE L1 4608 6177 0 857 104 22 0 chr1 3011547 3011681 -239652672 + MER4B LTR ERV1 474 610 0 587 340 22 19 chr1 3011682 3011997 -239652356 + ERVL LTR ERVL 5027 5342 -422 728 305 128 31 chr1 3013403 3013918 -239650435 - MLT1K LTR MaLR -10 578 14 1378 165 53 8 chr1 3015745 3015988 -239648365 + AluJo SINE Alu 1 254 -58 1086 178 28 19 chr1 3016061 3016274 -239648079 + AluJb SINE Alu 91 305 -7 220 345 95 0 chr1 3017662 3017778 -239646575 - MIR3 SINE MIR -50 158 32 256 328 56 16 chr1 3018934 3019059 -239645294 - MIR SINE MIR -73 189 60 257 304 33 0 chr1 3019713 3019805 -239644548 + MER21B LTR ERV1 2 96 -767 359 31 0 137 chr1 3019884 3020188 -239644165 + (CTGGGG)n Simple_repeat Simple_repeat 1 262 0 742 218 38 144 chr1 3020953 3021348 -239643005 + MER51C LTR ERV1 288 640 0 231 204 0 0 chr1 3021652 3021706 -239642647 + (CA)n Simple_repeat Simple_repeat 1 54 0 251 83 0 0 chr1 3021795 3021831 -239642522 + MLT2C2 LTR ERVL 429 464 0 533 143 11 0 chr1 3021837 3021928 -239642425 - L1MB7 LINE L1 -207 5977 5886 2355 88 0 0 chr1 3023154 3023459 -239640894 + AluSx SINE Alu 1 305 -7 237 176 39 78 chr1 3024011 3024113 -239640240 + MLT1H LTR MaLR 419 516 -33 271 275 43 72 chr1 3025474 3025612 -239638741 + MIR3 SINE MIR 3 136 -72 1052 273 68 5 chr1 3026154 3026538 -239637815 - MLT2D LTR ERVL 0 414 7 299 357 65 11 chr1 3027011 3027196 -239637157 - MIR SINE MIR -2 260 66 191 174 0 65 chr1 3027305 3027351 -239637002 - MIR SINE MIR -124 138 96 229 360 23 0 chr1 3028050 3028136 -239636217 + MIR SINE MIR 77 164 -98 230 148 21 43 chr1 3028525 3028598 -239635755 + MER91 DNA MER1_type 1 35 -105 369 324 81 23 chr1 3028641 3028838 -239635515 + MIR SINE MIR 43 248 -14 1439 194 56 24 chr1 3029417 3029555 -239634798 + MLT1A1 LTR MaLR 15 147 -218 1847 147 0 66 chr1 3029555 3029676 -239634677 + AluJb SINE Alu 1 128 -184 2389 68 0 0 chr1 3029676 3029970 -239634383 - AluY SINE Alu -17 294 1 1847 147 0 66 chr1 3029970 3030182 -239634171 + AluJb SINE Alu 128 312 0 1439 194 56 24 chr1 3030182 3030383 -239633970 + MLT1A1 LTR MaLR 147 365 0 226 232 0 36 chr1 3030433 3030489 -239633864 - L2 LINE L2 -6 3307 3254 341 236 6 0 chr1 3031434 3031608 -239632745 + (CA)n Simple_repeat Simple_repeat 2 176 0 186 118 0 0 chr1 3033347 3033381 -239630972 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 2085 122 148 16 chr1 3033401 3033779 -239630574 + MSTA LTR MaLR 1 428 0 558 264 110 50 chr1 3034064 3034428 -239629925 - MLT1H LTR MaLR -9 540 155 519 306 144 4 chr1 3034870 3035174 -239629179 - L2 LINE L2 -230 3083 2741 2438 121 8 32 chr1 3035633 3036006 -239628347 - THE1B LTR MaLR 0 364 1 625 275 39 14 chr1 3036615 3036822 -239627531 + MLT1K LTR MaLR 361 572 -16 1255 244 138 14 chr1 3038326 3038740 -239625613 - MLT1C LTR MaLR 0 467 3 880 261 64 16 chr1 3042728 3043042 -239621311 + MLT1J LTR MaLR 165 493 -18 217 362 143 0 chr1 3043059 3043255 -239621098 + L2 LINE L2 2583 2806 -508 267 336 39 0 chr1 3047651 3047755 -239616598 + L3b LINE CR1 1145 1252 -331 348 259 0 0 chr1 3050241 3050376 -239613977 + (CA)n Simple_repeat Simple_repeat 2 136 0 247 265 48 0 chr1 3050376 3050459 -239613894 + (CATG)n Simple_repeat Simple_repeat 4 90 0 488 242 7 0 chr1 3050461 3050614 -239613739 + (CA)n Simple_repeat Simple_repeat 1 154 0 614 243 4 6 chr1 3050628 3051138 -239613215 + (CA)n Simple_repeat Simple_repeat 1 509 0 3025 270 108 28 chr1 3051543 3053015 -239611338 + L1MC4 LINE L1 6461 7995 0 445 285 91 0 chr1 3053156 3053342 -239611011 + L1MC5 LINE L1 6980 7182 -779 301 238 0 12 chr1 3053639 3053719 -239610634 + L1MC5 LINE L1 7696 7774 -187 438 259 12 42 chr1 3058589 3058755 -239605598 + MER5B DNA MER1_type 1 161 -28 389 331 42 0 chr1 3060705 3060847 -239603506 + MIR3 SINE MIR 12 159 -49 687 137 0 0 chr1 3061609 3061733 -239602620 + (CA)n Simple_repeat Simple_repeat 1 124 0 288 130 0 0 chr1 3061835 3061881 -239602472 + (CA)n Simple_repeat Simple_repeat 1 46 0 184 151 208 57 chr1 3063515 3063568 -239600785 - L2 LINE L2 -60 3253 3193 208 268 146 0 chr1 3071284 3071407 -239592946 - L2 LINE L2 -27 3245 3105 640 105 0 0 chr1 3073840 3073935 -239590418 + L1P LINE L1 45 139 -6007 223 289 67 83 chr1 3073992 3074172 -239590181 + L2 LINE L2 3096 3272 0 483 283 54 30 chr1 3074724 3074806 -239589547 + L1M4 LINE L1 2655 2734 -3412 8247 60 4 5 chr1 3074806 3075814 -239588539 - LTR13 LTR ERVK 0 1007 1 483 283 54 30 chr1 3075814 3075897 -239588456 + L1M4 LINE L1 2734 2824 -3322 1241 171 19 0 chr1 3075899 3076115 -239588238 + AluJb SINE Alu 85 304 -8 900 292 62 54 chr1 3076118 3076491 -239587862 + L1M4 LINE L1 2855 3230 -2916 3681 49 7 0 chr1 3076536 3076986 -239587367 + L1PA4 LINE L1 5702 6154 -1 1251 139 0 0 chr1 3076986 3077173 -239587180 + AluSg/x SINE Alu 124 310 0 260 329 84 21 chr1 3077382 3077525 -239586828 + L1MC4 LINE L1 5688 5839 -1969 666 280 107 81 chr1 3077645 3079557 -239584796 + L1MC4 LINE L1 5860 7899 -143 209 83 28 0 chr1 3080479 3080515 -239583838 + (CA)n Simple_repeat Simple_repeat 1 37 0 857 325 109 19 chr1 3080515 3081238 -239583115 + L1ME3A LINE L1 5316 6103 -67 * 4656 187 57 16 chr1 3081234 3082402 -239581951 + L1MC2 LINE L1 4967 6206 -138 1926 147 3 16 chr1 3082402 3082708 -239581645 + AluJb SINE Alu 11 312 0 4656 187 57 16 chr1 3082708 3082852 -239581501 + L1MC2 LINE L1 6206 6343 -1 376 325 60 65 chr1 3084203 3084992 -239579361 - L1M4 LINE L1 -2984 3162 2378 1662 234 62 77 chr1 3085131 3086077 -239578276 + L1MC5 LINE L1 6861 7792 -169 979 182 44 0 chr1 3087530 3087711 -239576642 + MER53 DNA DNA 1 189 0 789 247 18 0 chr1 3089377 3089547 -239574806 + MIR SINE MIR 81 253 -9 2584 55 0 0 chr1 3093900 3094211 -239570142 + AluY SINE Alu 1 311 0 1679 83 0 0 chr1 3094591 3094808 -239569545 + AluSq SINE Alu 87 303 -10 1544 197 0 45 chr1 3095774 3096083 -239568270 + AluJb SINE Alu 1 295 -17 961 102 16 0 chr1 3098364 3098491 -239565862 + AluSq/x SINE Alu 1 129 -183 898 191 54 112 chr1 3098934 3099248 -239565105 + MLT1K LTR MaLR 293 588 0 232 237 105 13 chr1 3099248 3099324 -239565029 - L2 LINE L2 -5 3308 3226 745 280 92 9 chr1 3099379 3099727 -239564626 + MLT1I LTR MaLR 23 449 -1 623 318 114 56 chr1 3099954 3100627 -239563726 + L1M4 LINE L1 2890 3660 -2486 1002 221 72 0 chr1 3100627 3100835 -239563518 + MER58A DNA MER1_type 1 223 -1 623 318 114 56 chr1 3100835 3100920 -239563433 + L1M4 LINE L1 3660 3739 -2407 408 193 76 17 chr1 3100945 3101064 -239563289 - L1MC1 LINE L1 -17 6316 6191 266 236 0 0 chr1 3101135 3101190 -239563163 + L2 LINE L2 3213 3267 -5 1756 131 3 122 chr1 3101374 3101586 -239562767 - AluJo SINE Alu 0 302 145 1460 174 7 18 chr1 3101586 3101868 -239562485 - AluSc SINE Alu -30 279 1 1756 131 3 122 chr1 3101868 3101998 -239562355 - AluJo SINE Alu -157 145 1 497 253 25 81 chr1 3102289 3102649 -239561704 - L1M4 LINE L1 -812 5334 4995 269 111 44 0 chr1 3102649 3102694 -239561659 - MIR SINE MIR -118 144 98 382 319 104 8 chr1 3102995 3103283 -239561070 - L1ME LINE L1 -521 5641 5332 312 343 30 54 chr1 3103363 3103529 -239560824 - L1ME LINE L1 -1081 5065 4904 1902 163 132 37 chr1 3103540 3104001 -239560352 + MLT1D LTR MaLR 1 505 0 359 297 72 7 chr1 3104036 3104174 -239560179 - L1ME LINE L1 -1331 4815 4669 21 0 0 0 chr1 3104180 3104201 -239560152 + AT_rich Low_complexity Low_complexity 1 21 0 803 175 35 14 chr1 3104201 3104344 -239560009 + AluJo SINE Alu 26 171 -141 940 195 12 0 chr1 3104487 3104656 -239559697 + FRAM SINE Alu 1 168 -8 2863 246 161 22 chr1 3104860 3106033 -239558320 + L1MEc LINE L1 32 1367 -5029 1983 161 0 3 chr1 3106289 3106593 -239557760 - AluJb SINE Alu -9 303 1 1657 133 130 7 chr1 3106775 3107068 -239557285 - MER2 DNA MER2_type -15 330 2 21 0 0 0 chr1 3107160 3107181 -239557172 + AT_rich Low_complexity Low_complexity 1 21 0 2443 67 0 0 chr1 3107240 3107552 -239556801 - AluY SINE Alu 0 312 1 628 178 138 13 chr1 3108055 3108207 -239556146 - MER2 DNA MER2_type -16 329 159 1390 236 114 43 chr1 3109740 3110257 -239554096 - L1MD2 LINE L1 -239 6120 5567 * 8246 228 49 34 chr1 3110245 3112899 -239551454 - L1M4 LINE L1 -1314 4832 2137 2345 126 57 94 chr1 3112899 3113095 -239551258 - Tigger1 DNA MER2_type -1 2417 2215 2210 123 20 0 chr1 3113095 3113396 -239550957 + AluSx SINE Alu 1 307 -5 2345 126 57 94 chr1 3113396 3113435 -239550918 - Tigger1 DNA MER2_type -203 2215 2176 1790 174 7 0 chr1 3113435 3113723 -239550630 + AluJo SINE Alu 6 295 -17 2345 126 57 94 chr1 3113723 3114028 -239550325 - Tigger1 DNA MER2_type -242 2176 1896 2302 105 0 0 chr1 3117230 3117525 -239546828 + AluSx SINE Alu 1 295 -17 569 272 82 22 chr1 3118406 3118770 -239545583 + MLT1D LTR MaLR 1 386 -119 338 325 25 12 chr1 3118871 3119034 -239545319 + MLT1D LTR MaLR 341 505 0 3571 105 18 0 chr1 3120288 3120793 -239543560 - MER75 DNA T2_type 0 514 1 1709 175 104 19 chr1 3121731 3122096 -239542257 + MSTD LTR MaLR 1 396 0 421 222 10 10 chr1 3122096 3122195 -239542158 + L1MD1 LINE L1 6143 6241 -1 573 314 63 35 chr1 3122299 3123253 -239541100 + L1ME4a LINE L1 4350 5330 -816 655 268 136 68 chr1 3123266 3123887 -239540466 + L1MC4 LINE L1 6866 7548 -494 2496 80 0 0 chr1 3123887 3124189 -239540164 + AluY SINE Alu 1 302 -9 655 268 136 68 chr1 3124189 3124317 -239540036 + L1MC4 LINE L1 7548 7666 -376 406 296 73 14 chr1 3125390 3125610 -239538743 + L1MC5 LINE L1 7622 7854 -107 2013 129 31 0 chr1 3126324 3126618 -239537735 + AluSx SINE Alu 1 303 -9 952 212 47 0 chr1 3127413 3127606 -239536747 + Tigger7 DNA MER2_type 32 233 -2254 1037 134 85 27 chr1 3127620 3127843 -239536510 + Tigger7 DNA MER2_type 2254 2489 -2 1254 168 74 1 chr1 3128185 3128615 -239535738 + MER21B LTR ERV1 1 505 -358 534 143 0 12 chr1 3129054 3129138 -239535215 - FLAM_A SINE Alu -20 122 40 282 56 0 0 chr1 3130970 3131006 -239533347 + (CA)n Simple_repeat Simple_repeat 1 36 0 240 294 81 22 chr1 3131045 3131181 -239533172 - L2 LINE L2 -2 3311 3168 244 108 0 0 chr1 3131739 3131776 -239532577 - U2 snRNA snRNA -151 37 1 416 245 167 30 chr1 3132147 3132380 -239531973 + MLT1H LTR MaLR 97 361 -188 440 276 44 22 chr1 3132477 3132702 -239531651 + L1ME3A LINE L1 5721 5950 -220 311 191 0 11 chr1 3134190 3134279 -239530074 + (CCCTA)n Simple_repeat Simple_repeat 3 90 0 2257 113 3 6 chr1 3134728 3135039 -239529314 - AluSg SINE Alu 0 310 1 647 281 115 0 chr1 3135616 3135982 -239528371 + L1ME4a LINE L1 5481 5888 -233 4644 179 22 42 chr1 3136140 3137652 -239526701 + L1MA6 LINE L1 4800 6277 -23 220 290 30 2 chr1 3138187 3138263 -239526090 + MIR SINE MIR 25 103 -105 348 224 60 82 chr1 3138426 3138609 -239525744 - MIR SINE MIR -51 211 33 335 286 0 0 chr1 3139586 3139663 -239524690 + L2 LINE L2 3233 3309 -4 1756 155 6 54 chr1 3139898 3140047 -239524306 + AluJb SINE Alu 1 129 -183 2276 104 7 0 chr1 3140047 3140344 -239524009 + AluSx SINE Alu 1 299 -13 1756 155 6 54 chr1 3140344 3140511 -239523842 + AluJb SINE Alu 129 302 -10 24 0 0 0 chr1 3140668 3140692 -239523661 + GC_rich Low_complexity Low_complexity 1 24 0 1662 178 45 116 chr1 3142536 3143071 -239521282 + L1MB3 LINE L1 5686 6182 -1 890 199 0 6 chr1 3143790 3143978 -239520375 - FRAM SINE Alu 0 176 1 253 298 12 12 chr1 3144517 3144601 -239519752 - L3 LINE CR1 -77 1500 1417 1926 114 73 0 chr1 3144773 3145045 -239519308 + AluSx SINE Alu 11 302 -10 2382 101 7 0 chr1 3145314 3145622 -239518731 - AluSx SINE Alu -2 310 1 383 288 30 0 chr1 3145667 3145799 -239518554 + L1MC4 LINE L1 5765 5900 -1908 331 285 46 39 chr1 3146445 3146575 -239517778 + L1MC4 LINE L1 6573 6703 -1339 2031 138 10 0 chr1 3146576 3146866 -239517487 - AluJo SINE Alu -18 294 2 899 187 49 0 chr1 3147188 3147391 -239516962 + MER72 LTR ERV1 5 217 -505 2066 168 23 5 chr1 3147424 3147822 -239516531 + MER72 LTR ERV1 318 722 0 1856 163 7 10 chr1 3147880 3148181 -239516172 - AluJb SINE Alu -12 300 1 1068 118 40 79 chr1 3149325 3149553 -239514800 + MER20 DNA MER1_type 1 219 0 268 263 40 0 chr1 3149605 3149681 -239514672 + L2 LINE L2 3189 3267 -5 * 353 295 96 18 chr1 3149677 3149843 -239514510 - MIR SINE MIR -19 243 65 1733 172 3 0 chr1 3149954 3150250 -239514103 + AluSx SINE Alu 1 297 -15 341 281 62 16 chr1 3150376 3150437 -239513916 + AluSq SINE Alu 87 144 -159 1684 112 29 0 chr1 3150437 3150678 -239513675 + AluSx SINE Alu 52 299 -13 341 281 62 16 chr1 3150678 3150744 -239513609 + AluSq SINE Alu 144 220 -83 1757 172 7 3 chr1 3151856 3152159 -239512194 + AluJb SINE Alu 1 304 -8 358 214 11 11 chr1 3154009 3154098 -239510255 + MER20 DNA MER1_type 130 218 -1 251 279 25 13 chr1 3154150 3154229 -239510124 + L2 LINE L2 3188 3267 -5 931 106 0 87 chr1 3154381 3154511 -239509842 - L1PB1 LINE L1 0 6151 6036 2073 132 7 3 chr1 3154511 3154821 -239509532 - AluSx SINE Alu -1 311 1 931 106 0 87 chr1 3154821 3154851 -239509502 - L1PB1 LINE L1 -115 6036 6005 1109 163 5 5 chr1 3155047 3155237 -239509116 + AluJo SINE Alu 107 296 -16 244 333 21 11 chr1 3157854 3157947 -239506406 + MIR SINE MIR 98 191 -71 244 365 17 9 chr1 3158965 3159080 -239505273 + L2 LINE L2 2953 3068 -245 198 313 198 0 chr1 3159384 3159480 -239504873 + MIR SINE MIR 32 146 -116 221 286 0 0 chr1 3159480 3159529 -239504824 + G-rich Low_complexity Low_complexity 4 52 0 326 105 0 18 chr1 3159636 3159693 -239504660 + (GGGGA)n Simple_repeat Simple_repeat 3 58 0 424 250 85 45 chr1 3160451 3160675 -239503678 + MLT1K LTR MaLR 356 588 0 372 237 61 69 chr1 3160947 3161078 -239503275 - L2 LINE L2 0 3313 3184 225 94 0 0 chr1 3161091 3161123 -239503230 + (CAGGG)n Simple_repeat Simple_repeat 3 34 0 300 296 72 13 chr1 3161123 3161275 -239503078 - L2 LINE L2 -270 3043 2883 1525 124 87 4 chr1 3161302 3161577 -239502776 - AluJb SINE Alu -14 298 1 1406 246 54 39 chr1 3161582 3162115 -239502238 + MER74A LTR ERVL 14 554 -4 269 347 151 8 chr1 3162115 3162354 -239501999 - L2 LINE L2 -418 2896 2624 192 349 121 6 chr1 3162694 3162860 -239501493 + L2 LINE L2 3075 3259 -54 948 235 70 78 chr1 3163450 3163975 -239500378 - L1M4 LINE L1 -2238 3908 3381 1782 170 83 9 chr1 3163975 3164299 -239500054 + MER7A DNA MER2_type 1 346 0 948 235 70 78 chr1 3164299 3165006 -239499347 - L1M4 LINE L1 -2765 3381 2486 1487 184 27 4 chr1 3165010 3165485 -239498868 + MER68 LTR ERV1 3 562 0 702 271 46 8 chr1 3165486 3165726 -239498627 - L1M4 LINE L1 -3688 2458 2210 683 265 62 65 chr1 3165746 3166017 -239498336 + L1MC4a LINE L1 5613 5884 -1924 1936 125 7 7 chr1 3166017 3166314 -239498039 + AluSx SINE Alu 2 298 -14 683 265 62 65 chr1 3166314 3166397 -239497956 + L1MC4a LINE L1 5884 5966 -1842 315 267 35 0 chr1 3166711 3166797 -239497556 + MIR SINE MIR 128 216 -46 194 242 0 76 chr1 3166821 3166887 -239497466 + L2 LINE L2 3206 3266 -6 1487 182 163 0 chr1 3167534 3167847 -239496506 - MER47A DNA MER2_type 0 366 3 250 312 91 0 chr1 3168590 3168667 -239495686 + MER91A DNA MER1_type 2 85 -111 4680 223 99 2 chr1 3169109 3170426 -239493927 + Charlie1 DNA MER1_type 1 2755 -6 239 281 47 0 chr1 3170838 3170902 -239493451 + MLT1K LTR MaLR 193 259 -329 462 207 9 17 chr1 3170980 3171096 -239493257 + MLT1D LTR MaLR 391 505 0 435 273 9 0 chr1 3172289 3172399 -239491954 - MIR SINE MIR -75 187 77 439 213 131 0 chr1 3173177 3173299 -239491054 + Charlie1 DNA MER1_type 2337 2474 -287 185 350 90 11 chr1 3173887 3174064 -239490289 - L2 LINE L2 -1038 2276 2086 366 254 79 32 chr1 3174349 3174475 -239489878 + MER5A DNA MER1_type 3 134 -55 256 221 29 150 chr1 3174372 3174478 -239489875 - MER5A DNA MER1_type -24 165 78 * 2060 139 0 13 chr1 3174478 3174794 -239489559 - AluSx SINE Alu 0 312 1 256 221 29 150 chr1 3174794 3174827 -239489526 - MER5A DNA MER1_type -111 78 43 316 281 30 59 chr1 3175601 3175736 -239488617 - MER5B DNA MER1_type -29 149 19 1276 135 18 11 chr1 3175917 3176168 -239488185 + L1MA1 LINE L1 5961 6220 -82 198 103 0 0 chr1 3176176 3176205 -239488148 + (TCCC)n Simple_repeat Simple_repeat 4 32 0 2028 136 0 13 chr1 3176214 3176524 -239487829 - AluSx SINE Alu -6 306 1 608 97 11 0 chr1 3176524 3176610 -239487743 + L1MA1 LINE L1 6209 6298 -4 258 298 36 0 chr1 3176733 3176817 -239487536 + MER5A DNA MER1_type 14 100 -89 338 289 30 52 chr1 3177473 3177608 -239486745 + MLT1J LTR MaLR 326 457 -54 370 284 99 12 chr1 3177653 3177815 -239486538 + HAL1 LINE L1 1680 1855 -652 33 0 0 0 chr1 3178137 3178170 -239486183 + AT_rich Low_complexity Low_complexity 1 33 0 2433 67 0 13 chr1 3179226 3179540 -239484813 + AluY SINE Alu 1 310 -1 2047 108 0 17 chr1 3180284 3180572 -239483781 + AluSx SINE Alu 1 283 -29 266 243 0 75 chr1 3180751 3180858 -239483495 - L2 LINE L2 -241 3031 2933 2352 94 0 0 chr1 3181479 3181788 -239482565 - AluSx SINE Alu -3 309 1 1914 120 7 7 chr1 3181821 3182112 -239482241 - AluJo SINE Alu -21 291 1 2103 132 0 0 chr1 3182953 3183249 -239481104 - AluSx SINE Alu -16 296 1 481 296 131 5 chr1 3183774 3183980 -239480373 + MIR SINE MIR 2 233 -29 420 294 132 47 chr1 3184102 3184398 -239479955 - MLT1J1 LTR MaLR 0 446 126 2113 78 42 0 chr1 3185275 3185558 -239478795 - AluY SINE Alu -16 295 1 1945 152 76 19 chr1 3186202 3186570 -239477783 - MLT1B LTR MaLR 0 390 2 2283 96 3 0 chr1 3186605 3186907 -239477446 + AluSq SINE Alu 1 303 -10 2312 89 3 0 chr1 3187192 3187494 -239476859 + AluSx SINE Alu 1 303 -9 297 0 0 0 chr1 3187494 3187527 -239476826 + (TA)n Simple_repeat Simple_repeat 1 33 0 639 214 68 24 chr1 3188471 3188654 -239475699 - MLT1D LTR MaLR -190 200 28 2316 76 0 0 chr1 3188873 3189174 -239475179 + AluY SINE Alu 1 301 -10 2111 121 0 19 chr1 3190400 3190715 -239473638 + AluSx SINE Alu 1 309 -3 2220 97 3 0 chr1 3191520 3191828 -239472525 - AluSc SINE Alu 0 309 1 1967 86 0 70 chr1 3192135 3192436 -239471917 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr1 3192436 3192460 -239471893 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 254 29 29 0 chr1 3193810 3193845 -239470508 + (TG)n Simple_repeat Simple_repeat 2 37 0 285 221 0 26 chr1 3193850 3193927 -239470426 + (TATATG)n Simple_repeat Simple_repeat 3 77 0 609 300 91 11 chr1 3194954 3195340 -239469013 + MLT1C LTR MaLR 6 461 -6 2382 70 0 19 chr1 3196291 3196627 -239467726 + AluY SINE Alu 2 331 0 463 265 37 7 chr1 3198463 3198599 -239465754 - MIR3 SINE MIR 0 208 69 1829 126 30 43 chr1 3198661 3198805 -239465548 + AluJb SINE Alu 2 146 -166 2430 62 13 0 chr1 3198805 3199109 -239465244 + AluSp SINE Alu 1 308 -5 1829 126 30 43 chr1 3199109 3199265 -239465088 + AluJb SINE Alu 146 298 -14 2034 95 44 7 chr1 3199821 3200115 -239464238 + AluSg SINE Alu 1 305 -5 223 328 0 0 chr1 3200455 3200519 -239463834 - L2 LINE L2 -3 3310 3247 189 171 0 0 chr1 3201212 3201247 -239463106 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2057 104 0 78 chr1 3201449 3201784 -239462569 + AluSx SINE Alu 1 309 -3 266 340 57 0 chr1 3202968 3203074 -239461279 + MIR SINE MIR 81 192 -70 1256 53 0 0 chr1 3203496 3203647 -239460706 - AluYa8 SINE Alu -12 298 148 278 45 159 0 chr1 3203661 3203705 -239460648 - AluY SINE Alu -120 181 131 2361 52 0 3 chr1 3203705 3204022 -239460331 - AluY SINE Alu 0 316 1 451 238 98 0 chr1 3204202 3204324 -239460029 - L1ME4a LINE L1 -23 6098 5965 2131 122 0 0 chr1 3204510 3204814 -239459539 + AluSx SINE Alu 1 304 -8 2127 105 31 0 chr1 3204903 3205189 -239459164 - AluSx SINE Alu -17 295 1 2459 55 0 0 chr1 3205217 3205509 -239458844 + AluY SINE Alu 1 292 -19 1793 170 38 57 chr1 3205781 3206151 -239458202 - MLT1A1 LTR MaLR -1 364 2 988 159 6 24 chr1 3206214 3206384 -239457969 - FAM SINE Alu -4 171 5 310 372 25 0 chr1 3206428 3206549 -239457804 - L1ME4a LINE L1 -2038 5770 5647 237 264 94 28 chr1 3207061 3207167 -239457186 + MER5A DNA MER1_type 58 170 -19 2387 90 0 0 chr1 3208240 3208550 -239455803 + AluSg SINE Alu 1 310 0 505 277 144 5 chr1 3209100 3209302 -239455051 + MIR SINE MIR 8 226 -36 414 369 7 0 chr1 3209487 3209636 -239454717 + MIR SINE MIR 94 243 -19 1738 165 0 4 chr1 3209862 3210135 -239454218 - AluJb SINE Alu -17 295 24 988 293 123 22 chr1 3210140 3210804 -239453549 - L2 LINE L2 -288 3025 2293 470 276 24 86 chr1 3211127 3211239 -239453114 + MIR SINE MIR 54 149 -113 2192 120 0 7 chr1 3211239 3211547 -239452806 + AluSx SINE Alu 1 306 -6 470 276 24 86 chr1 3211547 3211644 -239452709 + MIR SINE MIR 149 250 -12 309 135 0 0 chr1 3212069 3212121 -239452232 + (CA)n Simple_repeat Simple_repeat 1 52 0 1657 198 36 33 chr1 3212176 3212540 -239451813 + MLT1A1 LTR MaLR 1 365 0 356 279 29 0 chr1 3214598 3214702 -239449651 + MIR SINE MIR 59 165 -97 204 211 0 0 chr1 3216101 3216139 -239448214 + CT-rich Low_complexity Low_complexity 2 39 0 1763 52 39 4 chr1 3216347 3216577 -239447776 - AluY SINE Alu -11 300 63 1886 137 58 0 chr1 3216625 3216918 -239447435 - AluSx SINE Alu -2 310 1 816 163 0 0 chr1 3216961 3217090 -239447263 + AluJb SINE Alu 169 297 -15 2097 134 0 7 chr1 3217107 3217414 -239446939 + AluSx SINE Alu 2 306 -6 311 317 145 0 chr1 3218001 3218222 -239446131 - L2 LINE L2 -186 3086 2834 493 360 87 13 chr1 3218920 3219220 -239445133 + L1MC4a LINE L1 5506 5827 -1981 638 215 85 22 chr1 3219745 3219968 -239444385 + MLT1C LTR MaLR 6 242 -225 260 212 50 10 chr1 3220157 3220256 -239444097 + (CAGCC)n Simple_repeat Simple_repeat 4 106 0 2203 95 0 7 chr1 3220393 3220689 -239443664 + AluSg SINE Alu 1 294 -16 2209 99 7 0 chr1 3220713 3221007 -239443346 + AluSp SINE Alu 1 296 -17 2280 92 0 7 chr1 3221619 3221925 -239442428 - AluSx SINE Alu -8 304 1 848 326 19 19 chr1 3224734 3225163 -239439190 + L1MC4 LINE L1 5643 6071 -1971 * 1780 236 38 11 chr1 3224782 3225260 -239439093 + L1MB7 LINE L1 5686 6176 -8 1670 154 20 29 chr1 3225273 3225579 -239438774 + AluSx SINE Alu 1 303 -9 2347 98 0 0 chr1 3225905 3226210 -239438143 + AluSx SINE Alu 1 305 -7 763 178 0 22 chr1 3226524 3226659 -239437694 + FLAM_C SINE Alu 1 132 -1 6792 61 41 2 chr1 3226683 3227360 -239436993 + LTR13 LTR ERVK 1 727 -280 204 40 0 0 chr1 3227360 3227385 -239436968 + (TC)n Simple_repeat Simple_repeat 2 26 0 6792 61 41 2 chr1 3227385 3227664 -239436689 + LTR13 LTR ERVK 727 994 -13 791 143 71 0 chr1 3227700 3227826 -239436527 + AluJb SINE Alu 154 288 -24 853 181 0 0 chr1 3227826 3227959 -239436394 + FLAM_C SINE Alu 1 133 0 2118 108 3 7 chr1 3228016 3228313 -239436040 + AluSx SINE Alu 1 296 -16 2489 65 0 0 chr1 3228324 3228630 -239435723 + AluSc SINE Alu 1 306 -3 1213 112 0 0 chr1 3228630 3228800 -239435553 + AluSq SINE Alu 134 303 -10 571 252 95 25 chr1 3228800 3229042 -239435311 + L1ME1 LINE L1 5820 6078 -88 2345 113 33 141 chr1 3229051 3229247 -239435106 - Tigger1 DNA MER2_type 0 2418 2202 2373 65 3 0 chr1 3229247 3229540 -239434813 + AluY SINE Alu 4 297 -14 2345 113 33 141 chr1 3229540 3229655 -239434698 - Tigger1 DNA MER2_type -216 2202 2076 2073 88 7 4 chr1 3229655 3229928 -239434425 - AluSx SINE Alu -14 298 25 2345 113 33 141 chr1 3229928 3230057 -239434296 - Tigger1 DNA MER2_type -342 2076 1935 1787 169 0 13 chr1 3230057 3230364 -239433989 + AluJo SINE Alu 1 303 -9 2345 113 33 141 chr1 3230364 3230416 -239433937 - Tigger1 DNA MER2_type -483 1935 1879 1509 106 13 13 chr1 3230416 3230643 -239433710 - AluSc SINE Alu -16 293 67 2345 113 33 141 chr1 3230643 3230673 -239433680 - Tigger1 DNA MER2_type -539 1879 1962 2354 70 0 3 chr1 3230673 3230971 -239433382 + AluY SINE Alu 1 297 -14 2345 113 33 141 chr1 3230971 3231039 -239433314 - Tigger1 DNA MER2_type -455 1963 1889 4901 167 162 5 chr1 3231039 3232097 -239432256 - MER52A LTR ERV1 0 1755 532 195 232 0 0 chr1 3232561 3232617 -239431736 + (CTG)n Simple_repeat Simple_repeat 2 57 0 230 276 0 0 chr1 3232624 3232682 -239431671 - MER52A LTR ERV1 -1697 58 1 384 134 0 0 chr1 3232682 3232749 -239431604 - Tigger1 DNA MER2_type -524 1894 1828 1825 135 56 7 chr1 3232749 3233037 -239431316 - AluSx SINE Alu -10 302 1 484 159 71 26 chr1 3233038 3233151 -239431202 - Tigger1 DNA MER2_type -830 1588 1471 1225 140 0 0 chr1 3233151 3233330 -239431023 - AluSg/x SINE Alu 0 312 134 1929 126 0 7 chr1 3233330 3233616 -239430737 - AluY SINE Alu -7 304 21 8379 116 18 45 chr1 3233618 3233715 -239430638 - Tigger1 DNA MER2_type -940 1478 1380 2336 169 49 5 chr1 3233715 3234123 -239430230 + MSTB1 LTR MaLR 3 428 -4 8379 116 18 45 chr1 3234123 3234210 -239430143 - Tigger1 DNA MER2_type -1038 1380 1292 2070 112 0 11 chr1 3234210 3234549 -239429804 - AluSx SINE Alu 0 336 1 8379 116 18 45 chr1 3234549 3234560 -239429793 - Tigger1 DNA MER2_type -1126 1292 1282 2292 105 0 0 chr1 3234560 3234865 -239429488 - AluSg SINE Alu -5 305 1 8379 116 18 45 chr1 3234865 3235119 -239429234 - Tigger1 DNA MER2_type -1136 1282 1023 2148 110 3 13 chr1 3235119 3235418 -239428935 - AluSx SINE Alu -16 296 1 8379 116 18 45 chr1 3235418 3235519 -239428834 - Tigger1 DNA MER2_type -1395 1023 921 2126 132 0 0 chr1 3235519 3235822 -239428531 + AluSx SINE Alu 1 303 -9 8379 116 18 45 chr1 3235822 3236304 -239428049 - Tigger1 DNA MER2_type -1497 921 428 1978 126 20 3 chr1 3236304 3236606 -239427747 - AluSx SINE Alu -5 307 1 8379 116 18 45 chr1 3236606 3237013 -239427340 - Tigger1 DNA MER2_type -1990 428 12 2155 102 3 3 chr1 3237013 3237307 -239427046 - AluSx SINE Alu -18 294 1 8379 116 18 45 chr1 3237307 3237339 -239427014 - Tigger1 DNA MER2_type -2406 12 39 2296 100 0 0 chr1 3237339 3237639 -239426714 + AluSq SINE Alu 1 300 -13 8379 116 18 45 chr1 3237639 3237678 -239426675 - Tigger1 DNA MER2_type -2378 40 1 199 224 20 0 chr1 3238422 3238471 -239425882 + MIR SINE MIR 98 147 -61 581 186 12 43 chr1 3238694 3238752 -239425601 + L1MC/D LINE L1 5144 5202 -944 2289 38 52 0 chr1 3238752 3239040 -239425313 + AluY SINE Alu 1 303 -8 581 186 12 43 chr1 3239040 3239142 -239425211 + L1MC/D LINE L1 5202 5299 -847 1238 130 42 28 chr1 3239142 3239261 -239425092 + AluSq SINE Alu 1 117 -196 1403 169 9 123 chr1 3239261 3239411 -239424942 + AluJb SINE Alu 2 167 -135 2415 60 0 7 chr1 3239411 3239710 -239424643 + AluY SINE Alu 1 297 -14 1403 169 9 123 chr1 3239710 3239730 -239424623 + AluJb SINE Alu 167 188 -114 2084 113 0 10 chr1 3239730 3240040 -239424313 + AluSq SINE Alu 2 308 -5 1403 169 9 123 chr1 3240040 3240194 -239424159 + AluJb SINE Alu 188 290 -12 2184 100 7 0 chr1 3240203 3240503 -239423850 + AluSq SINE Alu 1 302 -11 1238 130 42 28 chr1 3240503 3240588 -239423765 + AluSq SINE Alu 124 218 -95 33 0 0 0 chr1 3240617 3240650 -239423703 + AT_rich Low_complexity Low_complexity 1 33 0 1701 153 3 0 chr1 3240670 3240958 -239423395 + L1MC/D LINE L1 5324 5612 -732 933 126 0 22 chr1 3241010 3241145 -239423208 + FLAM_C SINE Alu 1 132 -1 2195 73 0 0 chr1 3241545 3241820 -239422533 + AluY SINE Alu 1 275 -36 270 0 0 0 chr1 3241824 3241854 -239422499 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2405 61 3 0 chr1 3242656 3242950 -239421403 - AluY SINE Alu -16 295 1 374 226 2 11 chr1 3243120 3243221 -239421132 + L1M4 LINE L1 4934 5035 -1111 1703 159 7 21 chr1 3243221 3243510 -239420843 - AluJo SINE Alu -19 293 9 1660 159 66 17 chr1 3243541 3243830 -239420523 + AluSx SINE Alu 1 303 -9 2209 190 37 36 chr1 3243863 3244074 -239420279 + L1MB3 LINE L1 4668 4877 -1299 2057 99 44 7 chr1 3244074 3244367 -239419986 + AluSg SINE Alu 1 304 -6 2209 190 37 36 chr1 3244367 3244803 -239419550 + L1MB3 LINE L1 4877 5318 -858 442 76 38 13 chr1 3244803 3244882 -239419471 + L1MA5 LINE L1 6220 6300 0 2209 190 37 36 chr1 3244882 3244902 -239419451 + L1MB3 LINE L1 5318 5336 -840 302 318 0 37 chr1 3244954 3245061 -239419292 - L1MC4 LINE L1 -1336 6706 6604 2511 165 35 4 chr1 3245099 3245608 -239418745 + L1MB3 LINE L1 5304 5828 -355 2249 50 0 14 chr1 3245609 3245887 -239418466 + AluY SINE Alu 1 274 -37 2234 71 27 3 chr1 3245888 3246185 -239418168 + AluSc SINE Alu 1 304 -5 1493 166 37 24 chr1 3246286 3246582 -239417771 + AluJb SINE Alu 1 300 -12 2155 114 3 0 chr1 3246629 3246935 -239417418 - AluSq SINE Alu -6 307 1 2454 61 0 0 chr1 3246946 3247243 -239417110 - AluY SINE Alu -14 297 1 1010 173 9 91 chr1 3247296 3247465 -239416888 - AluJo SINE Alu -15 297 150 2346 78 0 0 chr1 3247465 3247760 -239416593 - AluY SINE Alu -16 295 1 1010 173 9 91 chr1 3247760 3247821 -239416532 - AluJo SINE Alu -162 150 86 1804 205 13 9 chr1 3247838 3248264 -239416089 + L1MB8 LINE L1 5220 5642 -532 242 196 71 0 chr1 3248326 3248382 -239415971 - MER21B LTR ERV1 -111 752 693 764 231 12 12 chr1 3248393 3248566 -239415787 - MER21B LTR ERV1 -652 211 39 450 214 8 26 chr1 3248590 3248707 -239415646 + L1MB8 LINE L1 6055 6169 -9 206 233 0 155 chr1 3249975 3250091 -239414262 - MER5A DNA MER1_type -30 159 62 396 319 65 14 chr1 3250091 3250334 -239414019 - L1MC5 LINE L1 -30 7931 7669 1611 194 0 25 chr1 3250334 3250649 -239413704 + AluJb SINE Alu 5 311 -1 396 319 65 14 chr1 3250649 3250697 -239413656 - L1MC5 LINE L1 -292 7669 7625 364 286 202 19 chr1 3250862 3251075 -239413278 + L1ME1 LINE L1 5910 6161 -5 379 279 35 64 chr1 3251076 3251248 -239413105 - L1MC5 LINE L1 -259 7702 7536 1418 83 0 0 chr1 3251684 3251864 -239412489 - AluSq SINE Alu 0 313 134 2307 73 0 3 chr1 3251865 3252165 -239412188 - AluY SINE Alu -12 299 1 2181 103 7 3 chr1 3252213 3252513 -239411840 + AluSx SINE Alu 1 301 -11 2427 65 0 10 chr1 3252513 3252822 -239411531 + AluY SINE Alu 1 306 -5 203 335 40 74 chr1 3252884 3253060 -239411293 - L2 LINE L2 0 3313 3144 232 188 150 50 chr1 3253250 3253330 -239411023 - MER3 DNA MER1_type -1 208 121 1406 113 39 18 chr1 3253331 3253560 -239410793 + AluSg/x SINE Alu 76 309 -1 2178 113 0 3 chr1 3254045 3254346 -239410007 + AluSx SINE Alu 1 300 -12 2201 89 7 0 chr1 3254410 3254715 -239409638 + AluSx SINE Alu 1 307 0 1545 82 0 0 chr1 3254770 3254965 -239409388 + AluSx SINE Alu 1 195 -117 2152 96 0 23 chr1 3254973 3255275 -239409078 + AluSx SINE Alu 1 295 -17 261 369 31 41 chr1 3255414 3255609 -239408744 + MIR SINE MIR 20 212 -50 27 18 8 0 chr1 3256806 3256884 -239407469 + GC_rich Low_complexity Low_complexity 1 34 0 27 73 0 0 chr1 3257224 3257279 -239407074 + GC_rich Low_complexity Low_complexity 1 55 0 2546 61 0 0 chr1 3258338 3258649 -239405704 - AluY SINE Alu 0 311 1 819 217 18 24 chr1 3258649 3258807 -239405546 - AluJo/FRAM SINE Alu -7 295 137 3971 141 157 57 chr1 3258812 3260050 -239404303 - pTR5 LTR ERV1 -111 2025 6 863 97 0 0 chr1 3260051 3260164 -239404189 - AluSq/x SINE Alu -197 115 3 228 297 148 0 chr1 3260272 3260310 -239404043 + MIR SINE MIR 71 102 -160 1829 171 0 16 chr1 3260310 3260626 -239403727 - AluJb SINE Alu -1 311 1 228 297 148 0 chr1 3260626 3260688 -239403665 + MIR SINE MIR 102 186 -76 903 181 75 0 chr1 3260869 3261029 -239403324 + FAM SINE Alu 1 172 -3 1616 251 147 37 chr1 3261511 3261914 -239402439 + L2 LINE L2 1723 2080 -1233 1744 141 52 21 chr1 3261914 3262205 -239402148 - AluJo SINE Alu -12 300 1 1616 251 147 37 chr1 3262205 3262221 -239402132 + L2 LINE L2 2080 2093 -1220 2147 121 0 0 chr1 3262221 3262526 -239401827 - AluSx SINE Alu -7 305 1 1616 251 147 37 chr1 3262526 3263307 -239401046 + L2 LINE L2 2093 3307 -6 2395 76 0 0 chr1 3263442 3263743 -239400610 + AluY SINE Alu 1 301 -10 2081 121 3 0 chr1 3263773 3264062 -239400291 + AluSg SINE Alu 1 290 -20 1167 188 31 5 chr1 3264062 3264285 -239400068 - AluJb SINE Alu -83 229 1 2426 76 0 0 chr1 3264332 3264636 -239399717 + AluY SINE Alu 1 304 -7 901 171 213 43 chr1 3264668 3264926 -239399427 + AluJb SINE Alu 1 302 0 314 315 132 24 chr1 3265012 3265225 -239399128 + L1ME3A LINE L1 5926 6161 -9 1969 126 13 13 chr1 3265261 3265570 -239398783 - AluY SINE Alu -2 309 1 1805 156 0 34 chr1 3265871 3266014 -239398339 + AluJo SINE Alu 1 147 -165 2257 73 0 33 chr1 3266014 3266316 -239398037 + AluY SINE Alu 7 298 -13 1805 156 0 34 chr1 3266316 3266493 -239397860 + AluJo SINE Alu 147 310 -2 1408 145 161 0 chr1 3266992 3267247 -239397106 + AluJb SINE Alu 5 300 -2 2225 84 3 17 chr1 3267274 3267573 -239396780 - AluSp SINE Alu -18 295 1 1935 148 0 13 chr1 3267573 3267876 -239396477 - AluJb SINE Alu -13 299 1 2406 21 0 3 chr1 3268182 3268515 -239395838 + AluY SINE Alu 1 332 0 730 304 26 7 chr1 3269239 3269483 -239394870 + MIR SINE MIR 3 249 -13 287 226 0 0 chr1 3269526 3269579 -239394774 - L2 LINE L2 -12 3260 3208 428 250 43 43 chr1 3269643 3269807 -239394546 - L1ME3A LINE L1 -36 6134 5971 253 271 0 0 chr1 3269811 3269881 -239394472 - L1ME3A LINE L1 -317 5853 5784 2297 98 10 0 chr1 3269902 3270208 -239394145 - AluY SINE Alu -2 309 1 2004 122 3 35 chr1 3270213 3270524 -239393829 - AluSx SINE Alu -11 301 1 642 238 86 0 chr1 3270527 3270796 -239393557 - L1M4 LINE L1 -2803 3343 3052 1060 116 0 0 chr1 3270798 3270945 -239393408 - AluSx SINE Alu -9 301 155 762 147 0 0 chr1 3270945 3271054 -239393299 - AluSx SINE Alu -204 109 1 419 132 26 13 chr1 3271060 3271158 -239393195 - AluJ/FRAM SINE Alu 0 312 232 2292 94 7 0 chr1 3271188 3271495 -239392858 - AluSp SINE Alu 0 313 5 2152 103 3 3 chr1 3271550 3271842 -239392511 + AluSx SINE Alu 7 298 -14 461 241 0 71 chr1 3271842 3271996 -239392357 - L1M4 LINE L1 -3136 3010 2873 2084 114 3 3 chr1 3271996 3272294 -239392059 + AluSp SINE Alu 1 298 -15 461 241 0 71 chr1 3272294 3272351 -239392002 - L1M4 LINE L1 -3273 2873 2814 1184 131 11 0 chr1 3272354 3272537 -239391816 - AluSq SINE Alu 0 313 129 1417 130 0 5 chr1 3272562 3272777 -239391576 - AluSq SINE Alu -5 308 95 672 172 78 0 chr1 3272778 3272894 -239391459 - AluSq SINE Alu -177 135 11 1362 241 23 10 chr1 3272896 3273290 -239391063 - L1M4 LINE L1 -3303 2843 2445 1720 164 31 0 chr1 3273293 3273585 -239390768 - AluJb SINE Alu -11 301 1 1370 207 24 24 chr1 3273663 3273762 -239390591 + AluJo SINE Alu 17 115 -197 2525 61 0 0 chr1 3273762 3274073 -239390280 - AluY SINE Alu 0 311 1 1370 207 24 24 chr1 3274073 3274268 -239390085 + AluJo SINE Alu 114 311 -1 320 119 0 0 chr1 3274279 3274341 -239390012 + L1MA4 LINE L1 6119 6183 -120 2002 128 3 16 chr1 3274419 3274724 -239389629 - AluSx SINE Alu -11 301 1 1806 263 141 3 chr1 3274755 3275485 -239388868 + HERV16 LTR ERVL 1630 2460 -2536 766 163 0 92 chr1 3275506 3275554 -239388799 - L1MB3 LINE L1 -1 6182 6131 2169 123 0 0 chr1 3275554 3275855 -239388498 + AluSq SINE Alu 1 301 -12 766 163 0 92 chr1 3275855 3275870 -239388483 - L1MB3 LINE L1 -52 6131 6116 1889 160 0 3 chr1 3275870 3276164 -239388189 - AluJo SINE Alu -19 293 1 2577 40 0 0 chr1 3276174 3276477 -239387876 - AluY SINE Alu -8 303 1 766 163 0 92 chr1 3276477 3276640 -239387713 - L1MB3 LINE L1 -76 6107 5966 291 238 0 0 chr1 3276641 3276704 -239387649 + HERV16 LTR ERVL 2469 2531 -2465 303 238 132 17 chr1 3277091 3277218 -239387135 + MER69 DNA AcHobo 2385 2526 0 1970 145 3 0 chr1 3277219 3277509 -239386844 - AluSx SINE Alu -15 297 7 1101 123 0 0 chr1 3277518 3277672 -239386681 - AluSq SINE Alu -157 156 3 2175 100 0 0 chr1 3277706 3278017 -239386336 - AluSg SINE Alu 0 311 1 180 179 0 0 chr1 3278497 3278536 -239385817 + (CA)n Simple_repeat Simple_repeat 2 40 0 1804 132 28 24 chr1 3278684 3278972 -239385381 + AluJo SINE Alu 1 289 -23 933 168 19 47 chr1 3278975 3279189 -239385164 + Tigger1 DNA MER2_type 1 208 -2210 2171 110 3 0 chr1 3279533 3279834 -239384519 - AluSx SINE Alu -10 302 1 190 319 154 0 chr1 3280805 3280896 -239383457 - L2 LINE L2 -17 3255 3151 2118 89 32 0 chr1 3281359 3281640 -239382713 - AluSx SINE Alu -22 290 1 246 260 14 0 chr1 3282660 3282733 -239381620 + G-rich Low_complexity Low_complexity 2 75 0 180 0 0 0 chr1 3283716 3283736 -239380617 + (CCCCG)n Simple_repeat Simple_repeat 2 21 0 197 400 0 0 chr1 3284161 3284266 -239380087 - MIR SINE MIR -74 134 30 231 344 0 21 chr1 3284916 3285012 -239379341 - MIR SINE MIR -11 251 158 344 266 64 138 chr1 3285818 3285876 -239378477 + MIR SINE MIR 64 125 -137 2054 119 0 42 chr1 3285876 3286186 -239378167 + AluSq SINE Alu 1 297 -16 2474 74 3 0 chr1 3286188 3286498 -239377855 + AluY SINE Alu 1 311 0 344 266 64 138 chr1 3286498 3286639 -239377714 + MIR SINE MIR 126 251 -11 241 260 0 27 chr1 3288078 3288151 -239376202 + L2 LINE L2 2905 2975 -339 21 36 0 0 chr1 3288420 3288448 -239375905 + GC_rich Low_complexity Low_complexity 1 28 0 213 39 0 0 chr1 3288464 3288490 -239375863 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chr1 3288886 3288916 -239375437 + GC_rich Low_complexity Low_complexity 1 30 0 373 278 157 15 chr1 3289585 3289852 -239374501 - L2 LINE L2 -267 3046 2740 216 0 0 0 chr1 3292851 3292875 -239371478 + (GGGA)n Simple_repeat Simple_repeat 1 24 0 1373 92 5 0 chr1 3294370 3294555 -239369798 + AluSp SINE Alu 125 310 -3 2152 97 6 67 chr1 3295083 3295467 -239368886 + AluSx SINE Alu 1 364 0 205 250 33 0 chr1 3295509 3295569 -239368784 - MIR SINE MIR -71 191 130 489 236 36 0 chr1 3295570 3295680 -239368673 - L2 LINE L2 -4 3268 3155 221 231 0 62 chr1 3295713 3295778 -239368575 + MIR SINE MIR 62 122 -86 2325 91 0 3 chr1 3296598 3296906 -239367447 + AluSg SINE Alu 2 308 -2 2112 126 0 3 chr1 3296919 3297213 -239367140 + AluSg SINE Alu 1 293 -17 1128 148 0 0 chr1 3297214 3297383 -239366970 + AluSg/x SINE Alu 134 302 -10 265 261 185 23 chr1 3297456 3297660 -239366693 + L2 LINE L2 2887 3118 -195 2090 87 21 10 chr1 3297671 3297959 -239366394 - AluSx SINE Alu -21 291 1 188 291 89 25 chr1 3298219 3298298 -239366055 + MIR SINE MIR 36 119 -89 181 332 138 37 chr1 3298499 3298767 -239365586 - L2 LINE L2 -145 3168 2874 183 309 140 51 chr1 3299575 3299753 -239364600 - MIR SINE MIR -18 244 51 623 320 104 0 chr1 3299954 3300176 -239364177 + MIR SINE MIR 17 261 -1 1597 173 0 7 chr1 3300232 3300546 -239363807 - AluJo SINE Alu 0 312 18 180 243 0 0 chr1 3300869 3300906 -239363447 - MIR SINE MIR -8 254 218 209 352 63 42 chr1 3302067 3302209 -239362144 - MIR SINE MIR -18 244 100 193 211 115 0 chr1 3302383 3302435 -239361918 + MIR SINE MIR 68 125 -137 2182 128 0 0 chr1 3302586 3302892 -239361461 + AluSx SINE Alu 1 306 -6 496 209 58 68 chr1 3302960 3303151 -239361202 + MER53 DNA DNA 1 189 0 200 298 58 87 chr1 3303157 3303365 -239360988 - L2 LINE L2 -95 3177 2976 2211 70 18 3 chr1 3303491 3303775 -239360578 + AluSg SINE Alu 3 290 -20 306 215 16 33 chr1 3304205 3304326 -239360027 + (CGGGG)n Simple_repeat Simple_repeat 2 120 0 22 35 0 0 chr1 3304569 3304598 -239359755 + GC_rich Low_complexity Low_complexity 1 29 0 206 253 32 0 chr1 3304870 3304934 -239359419 - MIR SINE MIR -63 145 103 267 285 277 13 chr1 3305630 3305865 -239358488 + L3 LINE CR1 1280 1576 -1 203 368 23 0 chr1 3305942 3306029 -239358324 - MIR SINE MIR -1 261 173 2237 87 0 17 chr1 3306045 3306344 -239358009 + AluSc SINE Alu 1 294 -15 2406 73 0 3 chr1 3306344 3306645 -239357708 + AluSc SINE Alu 1 300 -9 2035 106 34 10 chr1 3306653 3306945 -239357408 + AluSq SINE Alu 1 299 -14 347 262 78 30 chr1 3306980 3307119 -239357234 - MIR SINE MIR -34 174 31 262 214 274 8 chr1 3308062 3308179 -239356174 - MIR3 SINE MIR -16 192 45 183 80 0 0 chr1 3308852 3308877 -239355476 + (CA)n Simple_repeat Simple_repeat 1 25 0 264 221 39 0 chr1 3309509 3309586 -239354767 + C-rich Low_complexity Low_complexity 5 84 0 23 0 0 0 chr1 3311069 3311092 -239353261 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 12 12 chr1 3312565 3312647 -239351706 + (CCCG)n Simple_repeat Simple_repeat 4 85 0 210 150 0 0 chr1 3312714 3312754 -239351599 + (CCG)n Simple_repeat Simple_repeat 1 40 0 208 200 46 0 chr1 3313079 3313144 -239351209 + MIR SINE MIR 55 122 -86 221 294 0 33 chr1 3314072 3314164 -239350189 + CT-rich Low_complexity Low_complexity 2 90 0 1694 83 0 13 chr1 3315950 3316180 -239348173 - AluSg/x SINE Alu -1 309 83 430 151 32 32 chr1 3316365 3316458 -239347895 - MER5A DNA MER1_type -83 106 14 217 183 24 122 chr1 3317428 3317510 -239346843 - MIR SINE MIR -73 135 62 198 234 169 13 chr1 3318376 3318453 -239345900 - MIR SINE MIR -170 92 4 465 297 65 19 chr1 3318809 3318964 -239345389 + MIR SINE MIR 11 172 -90 203 270 149 0 chr1 3320783 3320857 -239343496 + MIR SINE MIR 59 143 -65 243 266 16 0 chr1 3321218 3321282 -239343071 + (CA)n Simple_repeat Simple_repeat 2 66 0 359 237 93 10 chr1 3321532 3321629 -239342724 + MIR SINE MIR 41 145 -63 23 33 0 0 chr1 3321954 3321984 -239342369 + GC_rich Low_complexity Low_complexity 1 30 0 227 293 0 0 chr1 3322135 3322217 -239342136 + CT-rich Low_complexity Low_complexity 3 84 0 195 42 0 0 chr1 3322734 3322758 -239341595 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 1109 152 18 4 chr1 3322767 3323749 -239340604 + (TGGA)n Simple_repeat Simple_repeat 1 995 0 200 170 43 21 chr1 3323753 3323800 -239340553 + GA-rich Low_complexity Low_complexity 4 51 0 326 370 110 37 chr1 3324501 3324828 -239339525 + L2 LINE L2 2917 3267 -5 313 270 14 0 chr1 3325319 3325393 -239338960 - MIR3 SINE MIR -20 188 114 195 220 0 0 chr1 3325501 3325551 -239338802 + (CA)n Simple_repeat Simple_repeat 2 51 0 313 326 36 22 chr1 3325735 3325873 -239338480 - MIR SINE MIR -65 197 58 2122 82 0 7 chr1 3326686 3326967 -239337386 + AluSx SINE Alu 1 279 -33 261 0 0 0 chr1 3326967 3326996 -239337357 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 192 125 0 0 chr1 3327897 3327929 -239336424 + (CCG)n Simple_repeat Simple_repeat 3 34 0 2180 118 3 0 chr1 3329394 3329698 -239334655 + AluSx SINE Alu 1 305 -7 510 260 164 11 chr1 3330050 3330227 -239334126 + MIR SINE MIR 51 254 -8 236 235 94 0 chr1 3331094 3331179 -239333174 + MER113 DNA MER1_type? 10 102 -419 496 200 157 0 chr1 3331668 3331783 -239332570 + FLAM_A SINE Alu 1 133 -9 2129 72 11 18 chr1 3331785 3331865 -239332488 + AluSc SINE Alu 1 80 -229 2716 16 0 0 chr1 3331865 3332170 -239332183 + AluYa5 SINE Alu 1 305 -6 2129 72 11 18 chr1 3332170 3332367 -239331986 + AluSc SINE Alu 80 276 -33 288 0 0 0 chr1 3332367 3332399 -239331954 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 284 0 12 chr1 3332497 3332578 -239331775 + CT-rich Low_complexity Low_complexity 1 80 0 260 330 0 22 chr1 3334240 3334331 -239330022 + GA-rich Low_complexity Low_complexity 2 90 0 290 253 55 55 chr1 3335085 3335195 -239329158 + MIR SINE MIR 39 147 -63 2227 107 3 16 chr1 3335239 3335556 -239328797 + AluSp SINE Alu 1 313 0 255 304 0 39 chr1 3337974 3338076 -239326277 + GA-rich Low_complexity Low_complexity 4 101 0 204 252 48 19 chr1 3338117 3338220 -239326133 + (CAGAGA)n Simple_repeat Simple_repeat 1 106 0 248 269 39 62 chr1 3339897 3340027 -239324326 + L2 LINE L2 2649 2775 -539 390 318 60 7 chr1 3340380 3340531 -239323822 + MIR SINE MIR 34 192 -70 226 287 50 69 chr1 3340622 3340723 -239323630 + MIR SINE MIR 118 216 -46 2138 126 7 0 chr1 3341877 3342186 -239322167 + AluSx SINE Alu 2 312 0 237 200 33 33 chr1 3343230 3343290 -239321063 - MIR SINE MIR -164 98 39 207 0 0 0 chr1 3345469 3345492 -239318861 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 770 173 87 7 chr1 3345494 3345644 -239318709 - AluJb SINE Alu -30 282 121 280 264 27 73 chr1 3345644 3345754 -239318599 - MIR SINE MIR -115 147 43 2524 50 0 0 chr1 3346241 3346543 -239317810 - AluY SINE Alu -9 302 1 283 309 73 8 chr1 3346678 3346801 -239317552 + MIR SINE MIR 95 225 -37 234 301 0 72 chr1 3347207 3347400 -239316953 + GA-rich Low_complexity Low_complexity 1 179 0 * 269 236 0 28 chr1 3347355 3347427 -239316926 + (CAGAGA)n Simple_repeat Simple_repeat 5 74 0 989 103 44 12 chr1 3347502 3348588 -239315765 + (TGGA)n Simple_repeat Simple_repeat 1 1120 0 716 127 42 0 chr1 3348599 3348764 -239315589 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 439 231 18 0 chr1 3348821 3348990 -239315363 + (TGGA)n Simple_repeat Simple_repeat 4 175 0 226 204 59 13 chr1 3349013 3349165 -239315188 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 591 290 55 19 chr1 3349786 3350022 -239314331 - MIR SINE MIR -6 256 10 750 180 0 0 chr1 3350658 3350780 -239313573 + FLAM_A SINE Alu 5 126 -7 377 270 157 36 chr1 3350840 3351242 -239313111 - L2 LINE L2 -283 3030 2495 29 90 0 0 chr1 3352778 3352856 -239311497 + GC_rich Low_complexity Low_complexity 1 78 0 40 59 0 0 chr1 3352984 3353052 -239311301 + GC_rich Low_complexity Low_complexity 1 68 0 1962 81 23 55 chr1 3355197 3355507 -239308846 - AluSc SINE Alu -9 300 1 2224 78 7 20 chr1 3355784 3356090 -239308263 + AluSx SINE Alu 1 302 -10 2129 117 7 0 chr1 3360171 3360469 -239303884 + AluSx SINE Alu 7 306 -6 2147 123 0 0 chr1 3360472 3360782 -239303571 + AluY SINE Alu 1 310 -1 1495 164 95 4 chr1 3361197 3361471 -239302882 - AluSx SINE Alu -13 299 1 891 135 0 0 chr1 3361547 3361673 -239302680 + AluJo SINE Alu 1 126 -186 26 0 0 0 chr1 3361673 3361699 -239302654 + AT_rich Low_complexity Low_complexity 1 26 0 2272 51 20 7 chr1 3361932 3362224 -239302129 - AluSp SINE Alu -16 297 2 925 165 24 0 chr1 3362554 3362718 -239301635 + AluJo SINE Alu 135 302 -10 2219 98 0 3 chr1 3362777 3363082 -239301271 + AluSq SINE Alu 1 304 -9 2049 87 7 0 chr1 3363515 3363792 -239300561 - AluSp SINE Alu -8 305 27 985 118 0 40 chr1 3364080 3364217 -239300136 + AluSq/x SINE Alu 1 142 -170 2318 78 3 10 chr1 3364217 3364525 -239299828 + AluSg SINE Alu 1 306 -4 2470 50 0 25 chr1 3364525 3364842 -239299511 + AluY SINE Alu 1 309 -2 985 118 0 40 chr1 3364842 3364855 -239299498 + AluSq/x SINE Alu 140 146 -166 2147 120 0 3 chr1 3364855 3365155 -239299198 + AluSx SINE Alu 1 299 -13 1729 176 14 3 chr1 3365190 3365486 -239298867 - AluJo SINE Alu -13 299 1 2053 121 0 3 chr1 3365555 3365852 -239298501 + AluSx SINE Alu 1 296 -16 1206 202 39 62 chr1 3366285 3366463 -239297890 - AluJb SINE Alu -2 300 130 2288 74 7 0 chr1 3366463 3366762 -239297591 - AluSp SINE Alu -12 301 1 1206 202 39 62 chr1 3366762 3366890 -239297463 - AluJb SINE Alu -172 130 1 1952 123 7 0 chr1 3367081 3367366 -239296987 + AluJb SINE Alu 19 305 -7 181 271 125 88 chr1 3367524 3367716 -239296637 + MIR3 SINE MIR 9 207 -1 1671 183 21 3 chr1 3367744 3368033 -239296320 + AluJo SINE Alu 1 294 -18 1995 91 4 0 chr1 3368033 3368298 -239296055 + AluY SINE Alu 38 303 -8 2333 80 0 7 chr1 3368303 3368604 -239295749 + AluY SINE Alu 1 299 -12 2018 147 3 6 chr1 3368607 3368919 -239295434 + AluSx SINE Alu 1 311 -1 2205 119 0 0 chr1 3368920 3369232 -239295121 + AluSp SINE Alu 1 312 -1 2141 107 0 7 chr1 3370169 3370469 -239293884 - AluSg SINE Alu -12 298 1 227 282 94 0 chr1 3373167 3373252 -239291101 + L2 LINE L2 491 583 -2731 205 300 0 0 chr1 3373255 3373325 -239291028 + L2 LINE L2 853 922 -2392 431 262 29 0 chr1 3373365 3373468 -239290885 - MER5A DNA MER1_type -80 109 4 243 291 55 27 chr1 3373535 3373645 -239290708 + L2 LINE L2 1008 1120 -2194 743 184 209 8 chr1 3373705 3374213 -239290140 + LTR50 LTR ERVL 29 793 -2 227 331 117 7 chr1 3374213 3374280 -239290073 + L2 LINE L2 1230 1288 -2026 1046 182 0 0 chr1 3374280 3374445 -239289908 - FRAM SINE Alu -1 165 1 227 331 117 7 chr1 3374445 3374531 -239289822 + L2 LINE L2 1288 1400 -1914 1832 148 9 28 chr1 3374532 3374717 -239289636 - AluJo SINE Alu 0 312 134 180 0 0 0 chr1 3374717 3374737 -239289616 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1832 148 9 28 chr1 3374737 3374869 -239289484 - AluJo SINE Alu -178 134 1 200 159 23 45 chr1 3375066 3375154 -239289199 + C-rich Low_complexity Low_complexity 1 86 0 225 283 100 29 chr1 3375154 3375304 -239289049 + L2 LINE L2 2817 2985 -287 1871 160 3 7 chr1 3375304 3375610 -239288743 - AluJo SINE Alu -7 305 1 225 283 100 29 chr1 3375610 3375666 -239288687 + L2 LINE L2 2985 3036 -236 1577 103 117 72 chr1 3375734 3375888 -239288465 - AluSx SINE Alu -9 303 157 2291 94 0 7 chr1 3375888 3376197 -239288156 - AluSg SINE Alu -3 307 1 1577 103 117 72 chr1 3376197 3376332 -239288021 - AluSx SINE Alu -155 157 1 183 275 0 0 chr1 3376432 3376472 -239287881 + L2 LINE L2 3271 3310 -3 205 282 0 24 chr1 3376586 3376671 -239287682 + MIR SINE MIR 150 232 -30 2451 62 3 0 chr1 3376713 3377017 -239287336 + AluSp SINE Alu 1 305 -8 2347 57 10 3 chr1 3377116 3377412 -239286941 + AluY SINE Alu 1 298 -13 698 152 0 9 chr1 3377518 3377630 -239286723 + FLAM_C SINE Alu 1 111 -32 186 71 0 0 chr1 3377668 3377696 -239286657 + (A)n Simple_repeat Simple_repeat 1 28 0 1570 130 123 4 chr1 3377696 3377965 -239286388 + AluJb SINE Alu 1 301 -11 283 253 72 0 chr1 3378381 3378464 -239285889 - MIR SINE MIR -84 124 36 1987 66 80 0 chr1 3378616 3378890 -239285463 - AluSx SINE Alu -16 296 1 226 297 10 40 chr1 3380043 3380144 -239284209 - MIR SINE MIR -65 143 46 203 247 136 25 chr1 3380801 3380882 -239283471 - MIR SINE MIR -62 146 57 2037 89 43 0 chr1 3381465 3381746 -239282607 - AluSx SINE Alu -19 293 1 216 180 0 40 chr1 3381813 3381863 -239282490 + MIR SINE MIR 101 148 -114 24 0 0 0 chr1 3382499 3382523 -239281830 + GC_rich Low_complexity Low_complexity 1 24 0 269 262 80 91 chr1 3382721 3382908 -239281445 - L2 LINE L2 -73 3199 3015 196 260 62 73 chr1 3384795 3384891 -239279462 - MER5B DNA MER1_type -62 116 22 1450 107 0 0 chr1 3386378 3386575 -239277778 + AluSx SINE Alu 1 197 -115 305 98 0 0 chr1 3386577 3386628 -239277725 + AluSx SINE Alu 252 302 0 1429 228 89 48 chr1 3387125 3387538 -239276815 - HAL1 LINE L1 -787 1720 1326 1647 96 0 0 chr1 3387538 3387758 -239276595 - AluSg/x SINE Alu -8 304 85 2135 99 26 7 chr1 3387763 3388066 -239276287 - AluSc SINE Alu 0 309 1 1429 228 89 48 chr1 3388066 3388151 -239276202 - HAL1 LINE L1 -1184 1323 1195 2254 103 6 0 chr1 3388156 3388467 -239275886 - AluSp SINE Alu 0 313 1 896 134 0 8 chr1 3388472 3388606 -239275747 - FLAM_C SINE Alu 0 133 1 365 216 126 32 chr1 3388613 3388803 -239275550 - HAL1 LINE L1 -1398 1109 902 1055 96 13 13 chr1 3388807 3388963 -239275390 - AluSg/x SINE Alu -17 293 138 471 237 7 65 chr1 3388968 3389107 -239275246 - HAL1 LINE L1 -1605 902 772 1078 294 123 24 chr1 3389558 3389700 -239274653 + L2 LINE L2 1828 1955 -1359 2268 62 0 33 chr1 3389700 3390007 -239274346 - AluSc SINE Alu -12 297 1 1812 164 17 0 chr1 3390007 3390304 -239274049 - AluJb SINE Alu -9 303 1 1078 294 123 24 chr1 3390304 3390860 -239273493 + L2 LINE L2 1954 2596 -718 206 297 54 0 chr1 3390988 3391062 -239273291 + L2 LINE L2 2862 2939 -333 2341 76 3 3 chr1 3392629 3392933 -239271420 - AluSq SINE Alu -9 304 1 2192 93 0 10 chr1 3392937 3393237 -239271116 - AluSp SINE Alu -16 297 1 2201 72 7 30 chr1 3395278 3395583 -239268770 + AluSx SINE Alu 1 298 -14 2214 104 0 3 chr1 3396238 3396546 -239267807 - AluSg SINE Alu -3 307 1 429 340 63 0 chr1 3396776 3396935 -239267418 - MIR SINE MIR -44 218 50 1424 158 22 0 chr1 3399002 3399224 -239265129 - AluJb SINE Alu -15 297 71 2033 118 7 3 chr1 3399252 3399548 -239264805 + AluSx SINE Alu 1 297 -15 455 288 107 42 chr1 3399764 3399884 -239264469 - MIR SINE MIR -15 247 136 781 200 0 0 chr1 3399884 3400014 -239264339 - FLAM_A SINE Alu -3 130 1 455 288 107 42 chr1 3400014 3400108 -239264245 - MIR SINE MIR -126 136 19 229 302 203 0 chr1 3400156 3400348 -239264005 - MER112 DNA MER1_type -22 238 8 2471 66 0 3 chr1 3400713 3401018 -239263335 + AluY SINE Alu 1 304 -7 1227 206 14 0 chr1 3401025 3401243 -239263110 + AluJo SINE Alu 1 221 -91 998 162 134 69 chr1 3401291 3401478 -239262875 - AluJo SINE Alu -13 299 91 2405 82 0 0 chr1 3401478 3401781 -239262572 - AluY SINE Alu -8 303 1 998 162 134 69 chr1 3401781 3401840 -239262513 - AluJo SINE Alu -221 91 37 2132 112 0 19 chr1 3401884 3402198 -239262155 + AluSx SINE Alu 1 308 -4 1605 141 4 38 chr1 3402203 3402336 -239262017 + AluSx SINE Alu 9 130 -182 2279 99 3 6 chr1 3402336 3402649 -239261704 + AluSp SINE Alu 1 312 -1 1605 141 4 38 chr1 3402649 3402777 -239261576 + AluSx SINE Alu 130 261 -51 687 172 41 41 chr1 3402777 3402922 -239261431 + AluJb SINE Alu 168 312 0 369 0 0 0 chr1 3402923 3402964 -239261389 + (CA)n Simple_repeat Simple_repeat 2 42 0 918 162 0 0 chr1 3403003 3403151 -239261202 - AluSg/x SINE Alu -8 304 157 1613 125 3 80 chr1 3403161 3403258 -239261095 + AluJb SINE Alu 18 121 -191 1916 149 0 0 chr1 3403258 3403534 -239260819 - AluSx SINE Alu -16 296 21 1613 125 3 80 chr1 3403534 3403747 -239260606 + AluJb SINE Alu 121 304 -8 2227 96 0 26 chr1 3403747 3404059 -239260294 + AluY SINE Alu 1 304 -7 1292 196 117 7 chr1 3404059 3404340 -239260013 + AluJo SINE Alu 1 312 0 802 171 0 14 chr1 3404569 3404709 -239259644 + FLAM_C SINE Alu 6 143 0 331 216 41 0 chr1 3404907 3405004 -239259349 + L1MB7 LINE L1 6084 6184 0 2141 116 3 0 chr1 3405694 3405987 -239258366 - AluSq SINE Alu -19 294 1 2320 65 7 3 chr1 3405999 3406293 -239258060 - AluSg SINE Alu -15 295 1 1956 90 0 97 chr1 3406973 3407313 -239257040 - AluSg SINE Alu 0 310 2 540 277 106 0 chr1 3408239 3408406 -239255947 + MIR SINE MIR 35 217 -45 41 0 0 0 chr1 3408810 3408851 -239255502 + GC_rich Low_complexity Low_complexity 1 41 0 21 100 0 0 chr1 3409018 3409088 -239255265 + GC_rich Low_complexity Low_complexity 1 70 0 23 33 0 0 chr1 3409234 3409264 -239255089 + GC_rich Low_complexity Low_complexity 1 30 0 2221 85 0 3 chr1 3409407 3409701 -239254652 + AluSx SINE Alu 1 293 -19 2315 48 17 3 chr1 3409924 3410216 -239254137 - AluY SINE Alu -15 296 1 737 156 14 71 chr1 3410366 3410507 -239253846 - FLAM_C SINE Alu 0 133 1 273 173 55 100 chr1 3410507 3410595 -239253758 + L1ME4a LINE L1 6008 6092 -29 2275 78 3 7 chr1 3410595 3410890 -239253463 - AluSq SINE Alu -19 294 1 273 173 55 100 chr1 3410890 3410911 -239253442 + L1ME4a LINE L1 6092 6112 -9 254 239 115 53 chr1 3411385 3411498 -239252855 + MIR SINE MIR 28 147 -115 1147 142 0 0 chr1 3411549 3411725 -239252628 - FRAM SINE Alu -1 175 1 2393 90 0 0 chr1 3412862 3413172 -239251181 - AluSg SINE Alu 0 310 1 258 32 0 0 chr1 3413999 3414030 -239250323 + (T)n Simple_repeat Simple_repeat 1 31 0 28 29 0 0 chr1 3415513 3415548 -239248805 + GC_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr1 3415595 3415625 -239248728 + GC_rich Low_complexity Low_complexity 1 30 0 297 154 0 0 chr1 3417855 3417907 -239246446 + FLAM_A SINE Alu 56 107 -26 527 120 0 43 chr1 3418104 3418221 -239246132 + (TCCCC)n Simple_repeat Simple_repeat 2 113 0 21 0 0 0 chr1 3418470 3418491 -239245862 + GC_rich Low_complexity Low_complexity 1 21 0 204 266 65 0 chr1 3421857 3421930 -239242423 - MIR3 SINE MIR -23 185 107 27 29 0 0 chr1 3422561 3422595 -239241758 + GC_rich Low_complexity Low_complexity 1 34 0 213 259 19 44 chr1 3422719 3422877 -239241476 + G-rich Low_complexity Low_complexity 1 154 0 360 244 136 29 chr1 3423876 3424083 -239240270 + MIR SINE MIR 3 241 -21 889 176 13 0 chr1 3424947 3425100 -239239253 - FRAM SINE Alu -22 154 1 225 239 30 60 chr1 3425103 3425170 -239239183 - MIR SINE MIR -115 147 83 395 336 14 2 chr1 3425296 3425435 -239238918 + MIR SINE MIR 31 172 -63 2101 113 3 25 chr1 3426249 3426569 -239237784 + AluSq SINE Alu 1 313 0 411 273 81 9 chr1 3426647 3426795 -239237558 + MIR SINE MIR 46 202 -37 238 111 89 0 chr1 3428243 3428288 -239236065 + MLT1A1 LTR MaLR 2 50 -378 2197 69 4 0 chr1 3428341 3428615 -239235738 - AluY SINE Alu -15 296 22 1689 155 3 46 chr1 3428624 3428782 -239235571 - AluJo SINE Alu -22 290 150 2244 107 3 3 chr1 3428782 3429090 -239235263 - AluSg SINE Alu -2 308 1 1689 155 3 46 chr1 3429090 3429234 -239235119 - AluJo SINE Alu -162 150 1 347 274 11 11 chr1 3429364 3429459 -239234894 + MLT1A1 LTR MaLR 185 279 -86 2010 127 10 16 chr1 3429495 3429809 -239234544 - AluSx SINE Alu 0 312 1 820 174 0 8 chr1 3429809 3429941 -239234412 - FLAM_A SINE Alu -2 131 1 229 250 44 0 chr1 3429946 3430014 -239234339 + MLT1A1 LTR MaLR 386 456 -1 2163 77 49 3 chr1 3431282 3431568 -239232785 - AluSq SINE Alu -14 299 1 1835 163 0 3 chr1 3432118 3432412 -239231941 + AluJb SINE Alu 1 293 -19 277 341 78 8 chr1 3432488 3432617 -239231736 - MIR SINE MIR -113 149 12 40 123 0 0 chr1 3434025 3434317 -239230036 + GC_rich Low_complexity Low_complexity 1 292 0 237 146 0 0 chr1 3434329 3434377 -239229976 + (TCCG)n Simple_repeat Simple_repeat 4 51 0 181 245 20 0 chr1 3434597 3434646 -239229707 - L2 LINE L2 -208 3064 3015 234 217 33 0 chr1 3434930 3434990 -239229363 + CT-rich Low_complexity Low_complexity 1 62 0 223 185 93 0 chr1 3436001 3436055 -239228298 - MIR SINE MIR -164 98 40 298 219 0 14 chr1 3438683 3438756 -239225597 - MER94 DNA DNA -19 115 44 410 239 246 0 chr1 3439557 3439699 -239224654 - MER5A DNA MER1_type 0 189 13 249 33 0 0 chr1 3440601 3440631 -239223722 + (CCTG)n Simple_repeat Simple_repeat 1 30 0 190 298 123 0 chr1 3441019 3441076 -239223277 + MIR SINE MIR 126 189 -73 934 241 92 3 chr1 3441106 3441401 -239222952 + L1MB8 LINE L1 5858 6178 0 514 234 27 24 chr1 3442210 3442373 -239221980 - MIR SINE MIR -67 141 25 232 207 17 35 chr1 3445331 3445375 -239218978 + L2 LINE L2 3215 3259 -13 237 65 0 0 chr1 3445375 3445406 -239218947 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 232 207 17 35 chr1 3445406 3445419 -239218934 + L2 LINE L2 3259 3271 -1 2157 89 48 0 chr1 3448590 3448883 -239215470 + AluSg SINE Alu 1 307 -3 293 305 109 56 chr1 3450648 3451005 -239213348 + L2 LINE L2 2842 3217 -96 469 257 71 0 chr1 3451034 3451174 -239213179 - MIR SINE MIR -78 184 35 192 286 198 0 chr1 3451269 3451395 -239212958 - L2 LINE L2 -251 3062 2912 181 308 33 0 chr1 3452729 3452820 -239211533 + L2 LINE L2 2963 3056 -216 207 329 130 49 chr1 3454634 3454880 -239209473 - L3 LINE CR1 -11 1566 1301 1700 171 7 14 chr1 3456310 3456603 -239207750 - AluSx SINE Alu -19 293 3 1132 153 0 0 chr1 3456981 3457151 -239207202 + AluJb SINE Alu 130 299 -13 2335 94 3 0 chr1 3457434 3457742 -239206611 + AluSq SINE Alu 1 309 -4 367 243 126 10 chr1 3459658 3459761 -239204592 + MIR SINE MIR 25 139 -123 1138 58 0 0 chr1 3460088 3460225 -239204128 - AluY SINE Alu -174 137 1 422 367 58 22 chr1 3460426 3460652 -239203701 + MIR SINE MIR 1 234 -28 2420 77 0 0 chr1 3462227 3462539 -239201814 - AluSx SINE Alu 0 312 1 1516 136 107 18 chr1 3462541 3462813 -239201540 - AluJb SINE Alu -16 296 1 663 191 8 46 chr1 3462816 3462967 -239201386 - FLAM_A SINE Alu 0 133 2 1284 239 156 5 chr1 3463033 3463464 -239200889 + MLT1D LTR MaLR 7 502 -3 875 261 52 41 chr1 3464307 3464671 -239199682 + MLT1C LTR MaLR 59 426 -41 1112 135 5 16 chr1 3465806 3465999 -239198354 - AluSg/x SINE Alu 0 310 120 2499 65 0 0 chr1 3466019 3466328 -239198025 - AluY SINE Alu -2 309 1 972 218 0 35 chr1 3466651 3466853 -239197500 + AluJo SINE Alu 101 295 -17 2416 216 68 27 chr1 3468411 3469046 -239195307 + L1MB8 LINE L1 5452 6119 -59 1587 171 42 3 chr1 3469046 3469332 -239195021 - AluJo SINE Alu -15 297 1 2416 216 68 27 chr1 3469332 3469390 -239194963 + L1MB8 LINE L1 6119 6173 -5 2286 93 0 3 chr1 3469560 3469862 -239194491 - AluSg SINE Alu -9 301 1 832 153 0 36 chr1 3469878 3470015 -239194338 - FLAM_C SINE Alu 0 133 2 343 238 0 0 chr1 3470051 3470131 -239194222 + MER116 DNA Mariner 1 80 0 2073 123 3 0 chr1 3470185 3470477 -239193876 - AluSx SINE Alu -19 293 1 271 319 93 24 chr1 3470707 3471038 -239193315 + L1MC5 LINE L1 7516 7901 -60 2151 121 0 0 chr1 3471275 3471572 -239192781 - AluSx SINE Alu -13 299 3 241 376 31 25 chr1 3472218 3472380 -239191973 + MIR SINE MIR 41 203 -59 180 0 0 0 chr1 3472780 3472800 -239191553 + (GA)n Simple_repeat Simple_repeat 2 21 0 257 106 0 21 chr1 3472805 3472852 -239191501 + (TG)n Simple_repeat Simple_repeat 2 47 0 252 319 96 24 chr1 3474004 3474170 -239190183 - MIR SINE MIR -84 178 1 192 250 171 0 chr1 3474677 3474753 -239189600 + L2 LINE L2 3170 3258 -14 204 67 0 0 chr1 3474754 3474784 -239189569 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 283 342 114 63 chr1 3475068 3475592 -239188761 + L3 LINE CR1 913 1463 -114 240 111 0 0 chr1 3477457 3477493 -239186860 + (A)n Simple_repeat Simple_repeat 1 36 0 9376 15 3 251 chr1 3477533 3479376 -239184977 - SVA Other Other 0 1386 1 185 256 116 35 chr1 3480275 3480361 -239183992 + L2 LINE L2 3172 3264 -8 319 219 134 0 chr1 3480492 3480574 -239183779 - L2 LINE L2 -1 3271 3179 462 298 77 80 chr1 3482566 3482918 -239181435 - L1M4 LINE L1 -3021 3125 2775 1468 226 72 88 chr1 3482955 3483320 -239181033 - L1M4 LINE L1 -2406 3740 3371 1775 170 83 9 chr1 3483320 3483644 -239180709 + MER7A DNA MER2_type 1 346 0 1468 226 72 88 chr1 3483644 3484351 -239180002 - L1M4 LINE L1 -2775 3371 2486 1380 181 27 4 chr1 3484355 3484830 -239179523 + MER68 LTR ERV1 3 562 0 652 271 46 8 chr1 3484831 3485071 -239179282 - L1M4 LINE L1 -3688 2458 2210 609 265 62 65 chr1 3485091 3485362 -239178991 + L1MC4a LINE L1 5613 5884 -1924 1969 125 7 7 chr1 3485362 3485659 -239178694 + AluSx SINE Alu 2 298 -14 609 265 62 65 chr1 3485659 3485742 -239178611 + L1MC4a LINE L1 5884 5966 -1842 338 256 35 0 chr1 3486056 3486142 -239178211 + MIR SINE MIR 128 216 -46 199 242 0 76 chr1 3486166 3486232 -239178121 + L2 LINE L2 3206 3266 -6 1480 182 163 0 chr1 3486879 3487192 -239177161 - MER47A DNA MER2_type 0 366 3 255 312 91 0 chr1 3487935 3488012 -239176341 + MER91A DNA MER1_type 2 85 -111 422 311 99 0 chr1 3488454 3488615 -239175738 + Charlie1a DNA MER1_type 1 177 -1278 4315 204 89 3 chr1 3488658 3489771 -239174582 + Charlie1a DNA MER1_type 241 1449 -6 435 207 9 17 chr1 3490325 3490441 -239173912 + MLT1D LTR MaLR 391 505 0 183 229 0 21 chr1 3490481 3490529 -239173824 + L2 LINE L2 3016 3062 -210 430 285 115 6 chr1 3491579 3491744 -239172609 - MIR SINE MIR -3 259 77 208 341 159 0 chr1 3492303 3492435 -239171918 - L2 LINE L2 0 3313 3161 406 213 131 0 chr1 3492522 3492644 -239171709 + Charlie1 DNA MER1_type 2337 2474 -287 285 254 14 51 chr1 3494005 3494195 -239170158 + CT-rich Low_complexity Low_complexity 1 183 0 198 333 36 63 chr1 3496398 3496509 -239167844 - MIR3 SINE MIR -86 122 15 206 283 17 0 chr1 3496881 3496941 -239167412 - MIR SINE MIR -129 133 73 187 335 58 48 chr1 3499137 3499343 -239165010 - L2 LINE L2 -235 3037 2830 247 300 80 0 chr1 3499906 3500006 -239164347 - MIR SINE MIR -113 149 42 192 77 0 0 chr1 3501758 3501784 -239162569 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 377 66 16 0 chr1 3502405 3502466 -239161887 + (CA)n Simple_repeat Simple_repeat 1 62 0 248 278 0 0 chr1 3502939 3502993 -239161360 - MIR3 SINE MIR -38 170 117 218 303 115 8 chr1 3503056 3503178 -239161175 + L2 LINE L2 3078 3212 -60 191 318 0 30 chr1 3504118 3504184 -239160169 - MIR SINE MIR -108 100 37 350 359 139 40 chr1 3504629 3504930 -239159423 - L1MC/D LINE L1 -2029 5779 5449 799 197 0 0 chr1 3505336 3505468 -239158885 - FLAM_A SINE Alu -1 132 1 1256 214 101 34 chr1 3505511 3505918 -239158435 - MLT1C LTR MaLR -30 437 4 258 250 29 57 chr1 3506039 3506179 -239158174 + G-rich Low_complexity Low_complexity 3 138 0 355 231 33 55 chr1 3506197 3506379 -239157974 + G-rich Low_complexity Low_complexity 3 180 0 329 246 39 50 chr1 3506397 3506576 -239157777 + G-rich Low_complexity Low_complexity 3 179 0 218 206 43 54 chr1 3506999 3507091 -239157262 + C-rich Low_complexity Low_complexity 3 93 0 372 218 58 40 chr1 3507115 3507289 -239157064 + C-rich Low_complexity Low_complexity 3 179 0 386 213 58 40 chr1 3507352 3507526 -239156827 + C-rich Low_complexity Low_complexity 3 179 0 253 254 36 24 chr1 3507458 3507623 -239156730 + (CACTC)n Simple_repeat Simple_repeat 5 171 0 * 350 207 55 43 chr1 3507584 3507748 -239156605 + C-rich Low_complexity Low_complexity 3 168 0 279 168 52 75 chr1 3507666 3507867 -239156486 + (CACCT)n Simple_repeat Simple_repeat 1 196 0 * 2170 87 10 17 chr1 3509447 3509746 -239154607 + AluSx SINE Alu 1 297 -15 200 289 0 0 chr1 3510493 3510538 -239153815 + (TG)n Simple_repeat Simple_repeat 1 45 0 468 289 31 5 chr1 3510907 3510967 -239153386 + MER113 DNA MER1_type? 3 60 -461 2082 135 0 19 chr1 3510967 3511285 -239153068 - AluSx SINE Alu 0 312 1 468 289 31 5 chr1 3511285 3511418 -239152935 + MER113 DNA MER1_type? 60 201 -320 727 194 0 8 chr1 3511424 3511553 -239152800 + FLAM_A SINE Alu 3 130 -3 242 211 0 11 chr1 3513112 3513202 -239151151 + (TGG)n Simple_repeat Simple_repeat 1 89 0 329 225 0 22 chr1 3513217 3513399 -239150954 + (TGG)n Simple_repeat Simple_repeat 2 179 0 397 228 0 11 chr1 3513417 3513597 -239150756 + (TGG)n Simple_repeat Simple_repeat 2 179 0 418 266 3 6 chr1 3513627 3513941 -239150412 + (TGG)n Simple_repeat Simple_repeat 1 313 0 390 359 122 15 chr1 3514264 3514607 -239149746 - L2 LINE L2 -1 3271 2892 272 332 132 18 chr1 3514613 3514947 -239149406 + L2 LINE L2 2305 2676 -638 455 258 27 59 chr1 3515033 3515219 -239149134 + MIR SINE MIR 34 213 -49 2227 113 7 0 chr1 3516128 3516438 -239147915 - AluSx SINE Alu 0 312 1 1123 181 67 0 chr1 3516460 3516670 -239147683 + MER58A DNA MER1_type 1 224 0 213 39 0 0 chr1 3516791 3516817 -239147536 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1945 112 18 7 chr1 3516825 3517110 -239147243 - AluJb SINE Alu -24 288 1 1338 179 64 32 chr1 3518370 3518515 -239145838 - AluJo SINE Alu -23 289 150 297 0 0 0 chr1 3518515 3518548 -239145805 + (TG)n Simple_repeat Simple_repeat 2 34 0 1338 179 64 32 chr1 3518548 3518630 -239145723 - AluJo SINE Alu -162 150 49 2075 85 18 0 chr1 3518630 3518912 -239145441 + AluSx SINE Alu 11 297 -15 1338 179 64 32 chr1 3518912 3518963 -239145390 - AluJo SINE Alu -263 49 1 1374 175 13 89 chr1 3519031 3519345 -239145008 - AluJo SINE Alu -22 290 1 539 223 16 0 chr1 3519346 3519467 -239144886 - MER58B DNA MER1_type -8 333 211 520 113 94 0 chr1 3519471 3519577 -239144776 + MLT1A2 LTR MaLR 1 116 -258 983 126 0 31 chr1 3519577 3519736 -239144617 - AluJb SINE Alu -37 275 122 720 249 64 40 chr1 3519737 3519986 -239144367 + MLT1A2 LTR MaLR 120 374 0 711 194 60 45 chr1 3519993 3520118 -239144235 - MER58B DNA MER1_type -2216 204 73 1793 190 0 0 chr1 3520118 3520429 -239143924 + AluJo SINE Alu 1 311 -1 711 194 60 45 chr1 3520429 3520504 -239143849 - MER58B DNA MER1_type -2347 73 1 269 314 98 36 chr1 3520506 3520700 -239143653 + L3 LINE CR1 1012 1217 -360 415 344 54 42 chr1 3520874 3521133 -239143220 + L3 LINE CR1 1164 1425 -152 2109 98 25 0 chr1 3521765 3522051 -239142302 - AluSx SINE Alu -2 310 18 1764 149 3 17 chr1 3522096 3522384 -239141969 - AluJb SINE Alu -6 306 23 450 134 49 0 chr1 3522521 3522603 -239141750 - L1MB2 LINE L1 0 6171 6086 4385 173 20 7 chr1 3523627 3523983 -239140370 - L1MB3 LINE L1 -55 6128 5778 2210 111 10 0 chr1 3523983 3524290 -239140063 - AluSx SINE Alu -2 310 1 4385 173 20 7 chr1 3524290 3524871 -239139482 - L1MB3 LINE L1 -405 5778 5179 1700 159 9 38 chr1 3524871 3525048 -239139305 - AluJo SINE Alu -1 311 145 2315 86 0 7 chr1 3525048 3525350 -239139003 - AluSq SINE Alu -13 300 1 1700 159 9 38 chr1 3525350 3525492 -239138861 - AluJo SINE Alu -167 145 1 437 286 32 16 chr1 3525925 3526051 -239138302 + MIR3 SINE MIR 14 141 -67 244 354 21 0 chr1 3526834 3526930 -239137423 + MIR SINE MIR 109 206 -56 495 0 0 0 chr1 3528328 3528383 -239135970 + (TG)n Simple_repeat Simple_repeat 1 55 0 293 344 33 8 chr1 3529656 3529778 -239134575 - L2 LINE L2 -1 3312 3188 1881 96 4 15 chr1 3530142 3530412 -239133941 + AluSc SINE Alu 35 301 -8 404 190 41 22 chr1 3530769 3530881 -239133472 - MIR SINE MIR -58 150 46 236 196 0 0 chr1 3531478 3531524 -239132829 - MLT1I LTR MaLR -269 140 95 266 180 16 0 chr1 3531557 3531618 -239132735 + (TG)n Simple_repeat Simple_repeat 2 63 0 324 278 14 0 chr1 3531619 3531691 -239132662 + L1MCa LINE L1 1995 2067 -4359 536 188 8 0 chr1 3531692 3531820 -239132533 + (TG)n Simple_repeat Simple_repeat 2 130 0 301 260 0 39 chr1 3531824 3531901 -239132452 + L1MCa LINE L1 1995 2068 -4358 570 208 0 0 chr1 3531904 3532053 -239132300 + (TG)n Simple_repeat Simple_repeat 1 149 0 262 238 0 0 chr1 3532053 3532116 -239132237 - MLT1H LTR MaLR -458 91 29 249 167 33 50 chr1 3532522 3532582 -239131771 - MIR3 SINE MIR -41 167 109 1767 180 0 7 chr1 3532713 3533018 -239131335 + AluJb SINE Alu 1 303 -9 2160 112 13 0 chr1 3533407 3533780 -239130573 + AluSc SINE Alu 1 377 0 697 311 126 17 chr1 3533787 3534304 -239130049 + L1MC4 LINE L1 7342 7914 -128 661 226 10 0 chr1 3534320 3534624 -239129729 + (TG)n Simple_repeat Simple_repeat 1 307 0 309 236 49 73 chr1 3534651 3534774 -239129579 + L1MC4 LINE L1 7919 8038 -4 180 329 7 79 chr1 3534855 3534995 -239129358 + MIR SINE MIR 10 139 -123 1803 282 169 35 chr1 3535917 3537329 -239127024 - L2 LINE L2 0 3313 1616 2261 107 0 0 chr1 3537329 3537629 -239126724 + AluSx SINE Alu 1 300 -12 1803 282 169 35 chr1 3537629 3537962 -239126391 - L2 LINE L2 -1697 1616 1329 945 213 20 0 chr1 3537972 3538169 -239126184 - MER58A DNA MER1_type 0 224 24 521 236 9 9 chr1 3538202 3538312 -239126041 + MER5A DNA MER1_type 1 110 -79 346 140 0 0 chr1 3538912 3538969 -239125384 - AluS SINE Alu -246 57 1 2361 69 0 10 chr1 3538979 3539285 -239125068 - AluY SINE Alu -8 303 1 1669 140 0 76 chr1 3539388 3539703 -239124650 - AluJo SINE Alu -1 311 21 287 309 12 0 chr1 3540055 3540139 -239124214 - L2 LINE L2 -31 3282 3198 1177 269 147 14 chr1 3540622 3541139 -239123214 - MLT1E LTR MaLR -2 591 6 232 102 41 0 chr1 3541443 3541492 -239122861 + (TCTG)n Simple_repeat Simple_repeat 1 51 0 183 333 14 0 chr1 3543588 3543657 -239120696 + MIR SINE MIR 81 150 -58 846 264 60 35 chr1 3544936 3545350 -239119003 - MLT1H LTR MaLR -16 579 29 253 305 63 52 chr1 3545441 3545615 -239118738 - L2 LINE L2 -182 3090 2915 269 265 43 26 chr1 3548775 3548892 -239115461 - L2 LINE L2 -9 3304 3186 225 319 129 0 chr1 3549527 3549643 -239114710 - MIR SINE MIR -118 144 14 292 326 49 62 chr1 3550350 3550574 -239113779 - L2 LINE L2 -9 3304 3084 195 291 36 0 chr1 3550858 3550913 -239113440 - L2 LINE L2 -5 3267 3211 363 326 42 5 chr1 3551614 3551807 -239112546 - L1MC4a LINE L1 -1884 5924 5725 1932 137 6 19 chr1 3552930 3553245 -239111108 + AluSx SINE Alu 1 311 -1 1846 158 0 13 chr1 3553248 3553551 -239110802 + AluJo SINE Alu 1 299 -13 806 101 40 20 chr1 3553877 3554025 -239110328 + MER53 DNA DNA 37 187 -2 404 318 9 0 chr1 3554367 3554474 -239109879 - L2 LINE L2 -1 3312 3205 571 201 35 46 chr1 3554848 3554908 -239109445 + MLT1C LTR MaLR 6 65 -402 1491 169 143 0 chr1 3554908 3555181 -239109172 + AluJo SINE Alu 1 312 0 571 201 35 46 chr1 3555181 3555294 -239109059 + MLT1C LTR MaLR 65 177 -290 2105 94 31 44 chr1 3555356 3555456 -239108897 - MER51A LTR ERV1 0 634 534 1706 110 0 0 chr1 3555456 3555692 -239108661 + AluSq SINE Alu 1 236 -77 2105 94 31 44 chr1 3555692 3556141 -239108212 - MER51A LTR ERV1 -100 534 1 407 230 75 12 chr1 3556141 3556316 -239108037 + MLT1B LTR MaLR 273 390 0 2097 134 0 0 chr1 3556462 3556760 -239107593 - AluSx SINE Alu -10 302 5 2388 69 0 0 chr1 3557162 3557453 -239106900 - AluSx SINE Alu -21 291 1 425 294 107 19 chr1 3557707 3557999 -239106354 + L2 LINE L2 2750 3075 -238 1422 237 58 29 chr1 3558680 3558977 -239105376 - MLT1C LTR MaLR 0 467 151 1754 177 10 3 chr1 3558977 3559282 -239105071 + AluJb SINE Alu 1 307 -5 1422 237 58 29 chr1 3559282 3559431 -239104922 - MLT1C LTR MaLR -316 151 8 430 307 57 0 chr1 3559490 3559630 -239104723 + MIR SINE MIR 47 194 -68 2024 148 3 0 chr1 3560287 3560598 -239103755 - AluJo SINE Alu 0 312 1 2308 86 0 10 chr1 3561728 3562031 -239102322 + AluSc SINE Alu 1 300 -9 508 212 38 2 chr1 3562602 3562785 -239101568 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr1 3562945 3562966 -239101387 + AT_rich Low_complexity Low_complexity 1 21 0 2085 88 50 17 chr1 3563139 3563436 -239100917 + AluSp SINE Alu 1 307 -6 205 384 20 10 chr1 3563590 3563689 -239100664 - L2 LINE L2 -5 3267 3168 2034 185 57 35 chr1 3563907 3564139 -239100214 - L1MB8 LINE L1 -6 6172 5947 2007 95 32 18 chr1 3564139 3564424 -239099929 - AluSg SINE Alu -14 296 8 2034 185 57 35 chr1 3564424 3564518 -239099835 - L1MB8 LINE L1 -231 5947 5857 2255 98 0 3 chr1 3564518 3564813 -239099540 - AluSx SINE Alu -12 300 7 2034 185 57 35 chr1 3564813 3565032 -239099321 - L1MB8 LINE L1 -321 5857 5614 199 254 24 146 chr1 3565245 3565410 -239098943 + MER5A DNA MER1_type 21 165 -24 * 318 257 29 29 chr1 3565308 3565413 -239098940 - MER5A DNA MER1_type -52 137 33 1960 146 0 3 chr1 3568856 3569151 -239095202 + AluSx SINE Alu 1 294 -18 223 309 0 0 chr1 3569515 3569583 -239094770 + MIR SINE MIR 24 91 -117 352 329 81 33 chr1 3571763 3571973 -239092380 - MIR SINE MIR -31 231 12 2165 101 20 0 chr1 3575786 3576083 -239088270 + AluSx SINE Alu 1 303 -9 673 372 122 18 chr1 3576228 3576787 -239087566 + L3 LINE CR1 334 950 -627 977 133 118 0 chr1 3576828 3577039 -239087314 - L1MB4 LINE L1 0 6180 5945 882 185 29 0 chr1 3577046 3577219 -239087134 + MER58A DNA MER1_type 47 224 0 251 232 158 0 chr1 3577620 3577702 -239086651 - MIR SINE MIR -49 213 119 2175 96 0 7 chr1 3578017 3578309 -239086044 + AluSg SINE Alu 6 295 -15 818 254 62 102 chr1 3579005 3579525 -239084828 - MLT1D LTR MaLR -6 499 1 180 315 22 11 chr1 3579590 3579679 -239084674 - L2 LINE L2 -307 3006 2917 412 254 25 33 chr1 3579730 3579852 -239084501 - L2 LINE L2 -526 2788 2668 262 241 157 0 chr1 3579913 3579996 -239084357 - MER5A DNA MER1_type -83 106 11 471 278 83 14 chr1 3580007 3580223 -239084130 - L2 LINE L2 -649 2665 2435 1836 128 4 0 chr1 3580379 3580644 -239083709 + AluSx SINE Alu 34 299 -13 1394 153 66 35 chr1 3580654 3581001 -239083352 + L1MB3 LINE L1 5823 6180 -3 502 260 27 0 chr1 3581037 3581183 -239083170 + L1MC4a LINE L1 5813 5962 -1846 264 232 29 0 chr1 3581790 3581859 -239082494 + Charlie8 DNA MER1_type 127 197 -2220 233 330 104 0 chr1 3582540 3582583 -239081770 - L2 LINE L2 -4 3268 3231 1598 244 110 2 chr1 3582583 3583001 -239081352 - MLT1C LTR MaLR -4 463 1 233 330 104 0 chr1 3583001 3583063 -239081290 - L2 LINE L2 -41 3231 3152 186 331 76 45 chr1 3583469 3583626 -239080727 - L3 LINE CR1 -136 1441 1280 273 271 0 0 chr1 3585483 3585542 -239078811 + (CA)n Simple_repeat Simple_repeat 2 60 0 2096 106 20 0 chr1 3585644 3585936 -239078417 + AluSx SINE Alu 3 300 -12 205 347 76 18 chr1 3586780 3586943 -239077410 + MIR SINE MIR 18 186 -58 1730 139 55 45 chr1 3589156 3589328 -239075025 - AluJo SINE Alu 0 312 134 1771 147 25 73 chr1 3589328 3589655 -239074698 - AluJb SINE Alu 0 312 2 1730 139 55 45 chr1 3589655 3589791 -239074562 - AluJo SINE Alu -178 134 1 261 0 0 0 chr1 3589812 3589841 -239074512 + (TAA)n Simple_repeat Simple_repeat 2 30 0 287 329 73 18 chr1 3590352 3590516 -239073837 + MIR SINE MIR 8 180 -82 2161 106 0 13 chr1 3590809 3591110 -239073243 - AluSq SINE Alu -16 297 1 402 354 32 0 chr1 3595795 3595953 -239068400 + MIR SINE MIR 80 242 -20 575 284 57 44 chr1 3595978 3596207 -239068146 - MIR SINE MIR -14 248 17 239 232 0 29 chr1 3596970 3597039 -239067314 + C-rich Low_complexity Low_complexity 2 68 0 581 276 69 69 chr1 3598543 3598891 -239065462 - L2 LINE L2 -35 3278 2931 326 321 191 12 chr1 3598948 3599278 -239065075 - L2 LINE L2 -546 2768 2380 527 182 38 5 chr1 3607922 3608652 -239055701 + (TGGA)n Simple_repeat Simple_repeat 1 753 0 423 178 52 0 chr1 3608683 3609015 -239055338 + (TGGA)n Simple_repeat Simple_repeat 1 349 0 456 170 38 0 chr1 3609062 3609387 -239054966 + (TGGA)n Simple_repeat Simple_repeat 1 337 0 342 182 47 0 chr1 3609461 3609609 -239054744 + (TGGA)n Simple_repeat Simple_repeat 4 158 0 356 185 35 6 chr1 3609644 3609817 -239054536 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 205 246 16 0 chr1 3609822 3609883 -239054470 + GA-rich Low_complexity Low_complexity 3 64 0 336 205 19 0 chr1 3609885 3610041 -239054312 + (TGGA)n Simple_repeat Simple_repeat 4 162 0 624 247 64 70 chr1 3611901 3612056 -239052297 + MLT1C LTR MaLR 33 187 -280 2249 112 0 0 chr1 3612056 3612360 -239051993 + AluSx SINE Alu 1 304 -8 2328 102 0 0 chr1 3612360 3612665 -239051688 + AluSx SINE Alu 1 305 -7 624 247 64 70 chr1 3612665 3612820 -239051533 + MLT1C LTR MaLR 185 342 -125 1762 159 7 3 chr1 3614251 3614541 -239049812 + AluJb SINE Alu 1 291 -21 326 370 47 53 chr1 3614552 3614871 -239049482 + L1MEd LINE L1 196 512 -5693 357 334 63 88 chr1 3614924 3615076 -239049277 + L1MEd LINE L1 621 775 -5430 2389 60 0 17 chr1 3615076 3615375 -239048978 + AluSg SINE Alu 1 294 -16 357 334 63 88 chr1 3615375 3615496 -239048857 + L1MEd LINE L1 775 883 -5322 1202 107 11 165 chr1 3615496 3615768 -239048585 + MER30 DNA MER1_type 1 230 0 357 334 63 88 chr1 3615768 3615891 -239048462 + L1MEd LINE L1 883 1008 -5197 1911 91 0 0 chr1 3615891 3616134 -239048219 + AluSx SINE Alu 52 294 -18 1515 48 0 68 chr1 3616139 3616346 -239048007 + AluY SINE Alu 1 193 -118 297 219 0 0 chr1 3616419 3616483 -239047870 + MLT1E2 LTR MaLR 9 72 -582 1764 213 97 8 chr1 3616541 3617015 -239047338 + MLT1E2 LTR MaLR 111 626 0 427 328 35 39 chr1 3617143 3617375 -239046978 + L2 LINE L2 3083 3313 0 455 256 33 92 chr1 3617388 3617852 -239046501 + L1MEd LINE L1 1181 1645 -4751 3650 199 43 56 chr1 3618199 3618539 -239045814 + L1MB7 LINE L1 2113 2456 -3797 599 275 0 0 chr1 3618539 3618659 -239045694 + FLAM_A SINE Alu 1 120 -13 3650 199 43 56 chr1 3618659 3619222 -239045131 + L1MB7 LINE L1 2456 3025 -3228 2013 124 0 10 chr1 3619222 3619512 -239044841 + AluJb SINE Alu 21 307 -5 3650 199 43 56 chr1 3619512 3619811 -239044542 + L1MB7 LINE L1 3025 3326 -2927 2297 95 0 0 chr1 3619811 3620106 -239044247 - AluSq SINE Alu -18 295 1 3650 199 43 56 chr1 3620106 3620179 -239044174 + L1MB7 LINE L1 3326 6253 0 312 321 32 23 chr1 3620179 3620257 -239044096 + L1M4 LINE L1 2272 2348 -3798 1403 112 225 4 chr1 3620257 3620506 -239043847 - AluYb8 SINE Alu -14 304 1 312 321 32 23 chr1 3620506 3620773 -239043580 + L1M4 LINE L1 2348 2620 -3526 301 246 0 0 chr1 3620800 3620857 -239043496 + L1MC4 LINE L1 6647 6703 -1339 381 297 0 11 chr1 3620881 3620972 -239043381 - L1MC4 LINE L1 -1339 6703 6614 2173 122 0 0 chr1 3620973 3621269 -239043084 - AluSx SINE Alu -16 296 1 341 322 90 0 chr1 3621269 3621446 -239042907 + L1M4 LINE L1 2638 2830 -3316 653 123 98 33 chr1 3621498 3621620 -239042733 + FLAM_C SINE Alu 4 133 0 1334 94 0 0 chr1 3621630 3621800 -239042553 + AluSc SINE Alu 1 170 -139 1586 116 0 4 chr1 3621800 3622025 -239042328 + AluSc SINE Alu 70 293 -16 201 320 20 40 chr1 3622958 3623058 -239041295 + MIR3 SINE MIR 3 100 -108 338 314 41 8 chr1 3623147 3623268 -239041085 - MIR3 SINE MIR -71 137 13 3160 217 42 40 chr1 3623416 3623896 -239040457 + L1MB7 LINE L1 5302 5779 -405 2399 77 10 0 chr1 3623896 3624206 -239040147 + AluSq SINE Alu 1 313 0 3160 217 42 40 chr1 3624206 3624540 -239039813 + L1MB7 LINE L1 5779 6121 -63 2213 81 0 10 chr1 3624540 3624837 -239039516 - AluSx SINE Alu -18 294 1 3160 217 42 40 chr1 3624837 3624901 -239039452 + L1MB7 LINE L1 6121 6183 -1 204 205 0 0 chr1 3625218 3625257 -239039096 + GA-rich Low_complexity Low_complexity 1 39 0 192 261 82 67 chr1 3627918 3628052 -239036301 + L2 LINE L2 2976 3111 -161 2009 136 7 0 chr1 3628314 3628615 -239035738 + AluSx SINE Alu 1 303 -9 225 259 35 35 chr1 3631040 3631125 -239033228 + MIR3 SINE MIR 70 154 -54 310 297 68 7 chr1 3633345 3633493 -239030860 - HAL1b LINE L1 -806 542 386 494 316 84 85 chr1 3633514 3633972 -239030381 - L1MEc LINE L1 -1107 1469 982 270 0 0 0 chr1 3633989 3634019 -239030334 + (TC)n Simple_repeat Simple_repeat 1 30 0 938 168 6 12 chr1 3634021 3634182 -239030171 - AluJo SINE Alu -30 282 123 242 260 106 16 chr1 3634695 3634818 -239029535 + L2 LINE L2 3138 3271 -1 226 274 145 16 chr1 3636715 3636839 -239027514 - MIR SINE MIR -74 188 49 2080 116 10 7 chr1 3636847 3637148 -239027205 + AluSx SINE Alu 11 312 0 1741 151 3 7 chr1 3638231 3638515 -239025838 - AluJb SINE Alu -29 283 1 747 199 8 0 chr1 3638610 3638741 -239025612 - AluJo SINE Alu -180 132 1 219 296 114 0 chr1 3638743 3638831 -239025522 - MIR SINE MIR -113 149 52 599 190 0 49 chr1 3638835 3638977 -239025376 + MER45C DNA AcHobo 55 189 -764 696 206 221 32 chr1 3639066 3639202 -239025151 + MER45C DNA AcHobo 653 762 -819 1971 154 0 3 chr1 3639202 3639507 -239024846 + AluSx SINE Alu 1 304 -8 696 206 221 32 chr1 3639507 3639623 -239024730 + MER45C DNA AcHobo 762 953 0 2601 180 25 44 chr1 3639811 3640327 -239024026 + L1MB2 LINE L1 5586 6110 -61 257 0 30 0 chr1 3640327 3640360 -239023993 + (TTG)n Simple_repeat Simple_repeat 2 35 0 2165 82 32 0 chr1 3640364 3640645 -239023708 - AluSq SINE Alu -23 290 1 1212 166 0 0 chr1 3640648 3640823 -239023530 - FAM SINE Alu 0 175 1 2601 180 25 44 chr1 3640823 3640887 -239023466 + L1MB2 LINE L1 6115 6164 -7 2302 94 3 0 chr1 3641229 3641536 -239022817 + AluSc SINE Alu 1 308 -1 268 176 0 0 chr1 3641536 3641587 -239022766 + MER5A DNA MER1_type 62 112 -77 371 241 152 18 chr1 3641628 3641740 -239022613 - MIR SINE MIR -60 202 76 1134 217 120 69 chr1 3641748 3641827 -239022526 + MLT1C LTR MaLR 10 84 -383 1454 165 137 4 chr1 3641827 3642110 -239022243 + AluJb SINE Alu 3 318 0 1907 122 7 10 chr1 3642110 3642435 -239021918 + AluSx SINE Alu 1 324 0 1686 141 7 4 chr1 3642442 3642711 -239021642 + AluSx SINE Alu 1 270 -42 210 37 0 0 chr1 3642715 3642742 -239021611 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1134 217 120 69 chr1 3642742 3643080 -239021273 + MLT1C LTR MaLR 91 465 -2 533 333 78 19 chr1 3643776 3644097 -239020256 + L2 LINE L2 2931 3270 -2 1731 130 87 0 chr1 3644165 3644441 -239019912 - AluJo SINE Alu -12 300 1 1233 101 6 22 chr1 3844629 3844647 -238819706 + AluSg/x SINE Alu 116 133 -177 2170 123 3 7 chr1 3844647 3844955 -238819398 + AluSx SINE Alu 1 307 -5 1233 101 6 22 chr1 3844955 3845109 -238819244 + AluSg/x SINE Alu 129 286 -20 237 33 0 0 chr1 3845109 3845139 -238819214 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 332 314 34 8 chr1 3845762 3845880 -238818473 + MIR SINE MIR 124 244 -18 2462 72 0 0 chr1 3845885 3846178 -238818175 - AluY SINE Alu -18 293 1 2446 87 3 0 chr1 3846531 3846830 -238817523 - AluSp SINE Alu -13 300 1 1481 210 4 0 chr1 3846877 3847129 -238817224 + AluJb SINE Alu 1 253 -59 1452 129 42 104 chr1 3847145 3847483 -238816870 + AluSx SINE Alu 1 312 0 663 70 0 0 chr1 3847493 3847579 -238816774 + L1PA10 LINE L1 5805 5890 -278 262 107 30 0 chr1 3847579 3847636 -238816717 + AluJb SINE Alu 117 170 -132 1331 143 82 4 chr1 3847636 3847880 -238816473 - L1PA11 LINE L1 -24 6150 5888 1244 150 0 0 chr1 3848003 3848190 -238816163 + AluJb SINE Alu 117 303 -9 276 308 14 7 chr1 3848593 3848705 -238815648 - MIR SINE MIR -51 211 100 2356 88 0 14 chr1 3849091 3849388 -238814965 + AluY SINE Alu 1 293 -18 1681 137 12 99 chr1 3849417 3849739 -238814614 + AluJo SINE Alu 1 294 -18 444 241 49 12 chr1 3849752 3849914 -238814439 + L2 LINE L2 2856 3023 -290 227 225 50 38 chr1 3849947 3850027 -238814326 + MIR SINE MIR 75 155 -107 1577 119 5 0 chr1 3850787 3851005 -238813348 + AluSx SINE Alu 1 219 -93 707 130 0 32 chr1 3851005 3851128 -238813225 + AluSg/x SINE Alu 188 306 -6 559 224 133 12 chr1 3851167 3851332 -238813021 - MER58 DNA MER1_type -2177 243 59 686 199 0 22 chr1 3852818 3852954 -238811399 + AluJo SINE Alu 2 134 -178 2122 123 0 0 chr1 3852955 3853232 -238811121 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 3853242 3853268 -238811085 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2197 84 7 3 chr1 3853268 3853554 -238810799 + AluY SINE Alu 1 287 -24 2317 91 0 26 chr1 3854074 3854244 -238810109 - AluSx SINE Alu -11 301 128 317 86 17 0 chr1 3854244 3854302 -238810051 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 2059 114 4 4 chr1 3854302 3854582 -238809771 - AluSc SINE Alu -29 280 1 2317 91 0 26 chr1 3854582 3854719 -238809634 - AluSx SINE Alu -182 130 1 1594 140 85 51 chr1 3854719 3854875 -238809478 - AluJb SINE Alu -9 303 154 2180 82 4 0 chr1 3854875 3855155 -238809198 - AluY SINE Alu 0 311 31 1594 140 85 51 chr1 3855155 3855291 -238809062 - AluJb SINE Alu -158 154 1 2188 128 7 0 chr1 3855564 3855860 -238808493 + AluSg SINE Alu 1 298 -12 1827 157 14 7 chr1 3855878 3856172 -238808181 + AluSx SINE Alu 5 300 -12 2085 128 21 0 chr1 3856293 3856581 -238807772 + AluSx SINE Alu 5 298 -14 1414 135 24 0 chr1 3856746 3856954 -238807399 - AluSg/x SINE Alu -14 296 84 1825 163 0 14 chr1 3856982 3857277 -238807076 + AluJb SINE Alu 1 291 -21 700 110 0 0 chr1 3857285 3857385 -238806968 + AluS SINE Alu 2 101 -212 25 0 0 0 chr1 3857842 3857867 -238806486 + GC_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr1 3858859 3858899 -238805454 + GC_rich Low_complexity Low_complexity 1 40 0 189 246 0 0 chr1 3858929 3858994 -238805359 + C-rich Low_complexity Low_complexity 1 65 0 2162 107 10 10 chr1 3859332 3859642 -238804711 + AluSx SINE Alu 1 310 -2 1645 177 38 3 chr1 3859911 3860199 -238804154 - AluJb SINE Alu -14 298 1 1714 253 196 26 chr1 3860305 3861369 -238802984 - L2 LINE L2 -787 2527 1283 331 310 31 0 chr1 3861686 3861815 -238802538 - HAL1 LINE L1 -873 1634 1502 1188 127 0 33 chr1 3861829 3862010 -238802343 - AluSg/x SINE Alu -1 309 135 208 320 13 13 chr1 3862418 3862496 -238801857 - L2 LINE L2 -773 2541 2464 225 94 0 0 chr1 3863232 3863264 -238801089 + (TG)n Simple_repeat Simple_repeat 2 33 0 1361 128 59 0 chr1 3863264 3863468 -238800885 - AluJo SINE Alu -27 285 70 1553 185 0 58 chr1 3863481 3863643 -238800710 - AluJo SINE Alu -17 295 158 2217 114 14 0 chr1 3863643 3863933 -238800420 - AluSx SINE Alu -18 294 1 1553 185 0 58 chr1 3863933 3864078 -238800275 - AluJo SINE Alu -154 158 6 664 219 7 0 chr1 3864121 3864282 -238800071 + FRAM SINE Alu 9 170 0 2309 78 14 0 chr1 3864284 3864579 -238799774 + AluY SINE Alu 3 301 -10 1861 159 21 0 chr1 3864579 3864868 -238799485 + AluJo SINE Alu 1 295 -17 1067 73 0 0 chr1 3864892 3865015 -238799338 + AluSq/x SINE Alu 13 135 -177 2296 100 0 0 chr1 3865015 3865306 -238799047 + AluY SINE Alu 1 291 -20 2201 100 7 13 chr1 3865309 3865608 -238798745 + AluY SINE Alu 1 297 -14 280 241 114 0 chr1 3866217 3866296 -238798057 - L1MD3 LINE L1 -93 7902 7815 2033 117 10 10 chr1 3866298 3866589 -238797764 + AluSx SINE Alu 9 299 -13 1195 140 6 0 chr1 3866589 3866760 -238797593 + AluSg/x SINE Alu 134 305 -7 238 200 0 0 chr1 3866762 3866807 -238797546 - L1MC4a LINE L1 -150 7658 7614 422 161 0 37 chr1 3866837 3866918 -238797435 - U6 snRNA snRNA -29 78 1 2013 135 3 14 chr1 3866930 3867227 -238797126 - AluSx SINE Alu -18 294 1 382 140 18 0 chr1 3867247 3867316 -238797037 + AluJb SINE Alu 94 148 -154 2580 73 0 0 chr1 3867350 3867653 -238796700 + AluYa5 SINE Alu 1 303 -8 974 90 0 0 chr1 3867655 3867777 -238796576 + AluSp/q SINE Alu 170 291 -22 3193 159 58 20 chr1 3867804 3867988 -238796365 - L1MB4 LINE L1 -172 6008 5832 1749 178 13 16 chr1 3867988 3868292 -238796061 + AluJb SINE Alu 1 303 -9 3193 159 58 20 chr1 3868292 3868762 -238795591 - L1MB4 LINE L1 -348 5832 5329 2140 123 38 0 chr1 3868778 3869071 -238795282 - AluSx SINE Alu -8 304 1 2058 84 49 21 chr1 3869077 3869364 -238794989 - AluSq SINE Alu -1 312 18 302 307 42 85 chr1 3869561 3869646 -238794707 + L1MC4 LINE L1 5646 5733 -2075 615 186 65 16 chr1 3869646 3869770 -238794583 + FLAM_A SINE Alu 1 130 -3 302 307 42 85 chr1 3869770 3869873 -238794480 + L1MC4 LINE L1 5733 5826 -1982 2331 100 3 0 chr1 3869873 3870173 -238794180 + AluSx SINE Alu 1 301 -11 312 266 0 0 chr1 3870216 3870280 -238794073 + L1MC4 LINE L1 6640 6703 -1339 * 319 239 30 0 chr1 3870249 3870316 -238794037 + L1MCa LINE L1 1996 2064 -4362 * 356 298 0 0 chr1 3870284 3870401 -238793952 - L1MC4 LINE L1 -1139 6646 6571 189 0 0 0 chr1 3870403 3870424 -238793929 + (CA)n Simple_repeat Simple_repeat 2 22 0 1094 138 0 12 chr1 3870463 3870623 -238793730 + AluSx SINE Alu 1 158 -154 1658 85 0 0 chr1 3870623 3870823 -238793530 + AluY SINE Alu 101 300 -11 2492 52 3 0 chr1 3871441 3871728 -238792625 - AluY SINE Alu -23 288 1 2359 97 0 0 chr1 3871775 3872073 -238792280 + AluY SINE Alu 1 298 -13 1712 84 18 92 chr1 3872075 3872411 -238791942 + LTR14A LTR ERVK 54 343 -1 1924 270 24 22 chr1 3872417 3872513 -238791840 + HERVFH21 LTR ERV1 5932 6026 -503 2207 107 0 13 chr1 3872513 3872813 -238791540 - AluY SINE Alu -15 296 1 1924 270 24 22 chr1 3872813 3873237 -238791116 + HERVFH21 LTR ERV1 6026 6456 -73 2576 46 0 16 chr1 3873237 3873542 -238790811 - AluY SINE Alu -11 300 1 1924 270 24 22 chr1 3873542 3873617 -238790736 + HERVFH21 LTR ERV1 6456 6529 0 528 149 26 35 chr1 3873832 3873946 -238790407 + LTR21B LTR ERV1 326 438 0 2114 96 14 7 chr1 3873946 3874226 -238790127 - AluSp SINE Alu -31 282 1 1981 108 3 93 chr1 3874226 3874557 -238789796 - AluSq SINE Alu -11 302 1 2139 128 0 3 chr1 3874569 3874867 -238789486 - AluSx SINE Alu -15 297 1 236 178 0 0 chr1 3874868 3874887 -238789466 - MLT2D LTR ERVL -288 126 108 372 128 13 34 chr1 3874887 3874965 -238789388 + AluJo SINE Alu 1 52 -251 1516 161 0 29 chr1 3875066 3875339 -238789014 + AluJo SINE Alu 44 308 -4 192 279 0 0 chr1 3875457 3875500 -238788853 - L3 LINE CR1 -305 1272 1230 2241 103 7 3 chr1 3875730 3876030 -238788323 - AluSg SINE Alu -9 301 1 2187 122 0 10 chr1 3876057 3876348 -238788005 + AluSx SINE Alu 1 290 -22 225 0 0 0 chr1 3876348 3876373 -238787980 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2187 122 0 10 chr1 3876373 3876385 -238787968 + AluSx SINE Alu 290 301 -11 2663 55 0 0 chr1 3876588 3876895 -238787458 + AluY SINE Alu 1 307 -4 21 0 0 0 chr1 3878344 3878365 -238785988 + GC_rich Low_complexity Low_complexity 1 21 0 227 188 0 14 chr1 3878497 3878566 -238785787 + (CCCGAA)n Simple_repeat Simple_repeat 3 70 0 2329 97 0 10 chr1 3878888 3879197 -238785156 - AluSc SINE Alu -1 308 3 327 269 161 47 chr1 3879239 3879432 -238784921 - MIR SINE MIR -12 250 36 2333 111 0 0 chr1 3879647 3879945 -238784408 + AluSx SINE Alu 1 298 -14 212 262 0 0 chr1 3879947 3879989 -238784364 + polypurine Low_complexity Low_complexity 5 46 0 925 181 165 0 chr1 3879989 3880171 -238784182 + AluSx SINE Alu 1 212 -100 608 140 0 0 chr1 3880176 3880269 -238784084 + AluSp SINE Alu 141 233 -80 197 33 33 0 chr1 3880280 3880310 -238784043 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 663 70 0 0 chr1 3880329 3880415 -238783938 + L1PA10 LINE L1 5805 5890 -278 318 81 6 0 chr1 3880415 3880473 -238783880 + Alu SINE Alu 1 40 -262 1428 138 73 19 chr1 3880473 3880700 -238783653 - L1PA11 LINE L1 -24 6150 5906 2544 58 0 13 chr1 3880700 3881009 -238783344 - AluY SINE Alu -6 305 1 1428 138 73 19 chr1 3881009 3881041 -238783312 - L1PA11 LINE L1 -268 5906 5877 1338 134 43 94 chr1 3881148 3881477 -238782876 - AluSx SINE Alu 0 314 1 1481 210 4 0 chr1 3881493 3881745 -238782608 - AluJb SINE Alu -59 253 1 2363 90 3 0 chr1 3881792 3882082 -238782271 + AluSp SINE Alu 1 291 -22 3146 160 55 68 chr1 3882109 3882293 -238782060 - L1MB4 LINE L1 -172 6008 5823 1749 178 13 16 chr1 3882293 3882597 -238781756 + AluJb SINE Alu 1 303 -9 3146 160 55 68 chr1 3882597 3883083 -238781270 - L1MB4 LINE L1 -357 5823 5332 2140 123 38 0 chr1 3883083 3883376 -238780977 - AluSx SINE Alu -8 304 1 2187 99 43 16 chr1 3883382 3883686 -238780667 - AluSq SINE Alu -1 312 1 3146 160 55 68 chr1 3883686 3884012 -238780341 - L1MB4 LINE L1 -853 5327 5010 330 58 0 0 chr1 3884065 3884117 -238780236 - Alu SINE Alu 0 300 249 967 67 0 8 chr1 3884117 3884236 -238780117 - AluYb8 SINE Alu -200 118 1 902 230 118 0 chr1 3884237 3884507 -238779846 - L1MB4 LINE L1 -1118 5028 4727 * 2382 182 62 12 chr1 3884495 3885061 -238779292 - L1 LINE L1 -791 5355 4762 584 216 65 29 chr1 3885066 3885205 -238779148 - FRAM SINE Alu -30 146 3 21 0 0 0 chr1 3885225 3885246 -238779107 + AT_rich Low_complexity Low_complexity 1 21 0 1489 200 46 7 chr1 3885246 3885531 -238778822 - AluJo SINE Alu -16 296 1 886 173 26 108 chr1 3885531 3885695 -238778658 - AluJo SINE Alu -16 296 120 269 0 56 0 chr1 3885695 3885731 -238778622 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 2376 71 0 0 chr1 3885731 3886012 -238778341 - AluY SINE Alu -30 281 1 886 173 26 108 chr1 3886012 3886077 -238778276 - AluJo SINE Alu -190 122 85 2417 94 0 3 chr1 3886133 3886432 -238777921 - AluSq SINE Alu -15 298 1 1325 260 28 65 chr1 3886645 3886969 -238777384 - L1MC4 LINE L1 -1110 6932 6631 2212 127 0 19 chr1 3886969 3887283 -238777070 + AluSx SINE Alu 3 310 -2 1325 260 28 65 chr1 3887283 3887451 -238776902 - L1MC4 LINE L1 -1411 6631 6458 511 238 94 59 chr1 3887727 3887890 -238776463 + MIR SINE MIR 15 188 -74 2477 85 3 0 chr1 3887890 3888195 -238776158 + AluSp SINE Alu 1 306 -7 511 238 94 59 chr1 3888195 3888233 -238776120 + MIR SINE MIR 188 223 -39 363 326 53 8 chr1 3888263 3888395 -238775958 + L2 LINE L2 3173 3310 -3 1980 167 0 7 chr1 3888881 3889186 -238775167 - AluSx SINE Alu -9 303 1 653 292 82 0 chr1 3890161 3890380 -238773973 - MIR SINE MIR -24 238 2 2328 100 0 0 chr1 3890564 3890863 -238773490 + AluY SINE Alu 1 299 -12 351 244 163 53 chr1 3891007 3891216 -238773137 - MIR SINE MIR -10 252 21 319 324 75 6 chr1 3891236 3891409 -238772944 - MIR SINE MIR -18 244 60 2284 101 3 3 chr1 3891599 3891905 -238772448 - AluSq SINE Alu -7 306 1 1024 179 0 42 chr1 3891930 3892120 -238772233 - AluSg/x SINE Alu -9 303 122 2236 138 0 0 chr1 3892121 3892433 -238771920 - AluSx SINE Alu 0 312 1 21 0 0 0 chr1 3892438 3892459 -238771894 + AT_rich Low_complexity Low_complexity 1 21 0 2293 107 3 0 chr1 3892459 3892768 -238771585 - AluSg SINE Alu 0 310 1 315 311 145 29 chr1 3893257 3893775 -238770578 + L2 LINE L2 2091 2668 -646 2264 117 3 0 chr1 3894123 3894423 -238769930 - AluSg SINE Alu -7 303 3 228 35 0 0 chr1 3894428 3894457 -238769896 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1634 120 8 8 chr1 3894476 3894710 -238769643 - AluSg SINE Alu -76 234 1 2306 96 7 3 chr1 3894810 3895113 -238769240 - AluSx SINE Alu -8 304 1 780 191 76 25 chr1 3896775 3896932 -238767421 + FRAM SINE Alu 1 165 -11 2361 77 0 3 chr1 3897038 3897338 -238767015 + AluY SINE Alu 1 299 -12 2368 78 3 0 chr1 3898473 3898779 -238765574 - AluSq SINE Alu -6 307 1 2007 106 0 4 chr1 3898890 3899165 -238765188 - AluSg SINE Alu -5 305 32 2468 66 0 0 chr1 3899171 3899473 -238764880 - AluSg SINE Alu -8 302 1 2041 131 13 0 chr1 3899501 3899807 -238764546 - AluSx SINE Alu 0 312 3 1270 86 6 17 chr1 3899839 3900013 -238764340 - AluSg SINE Alu -138 172 1 309 305 76 8 chr1 3900045 3900176 -238764177 + MIR SINE MIR 11 150 -112 191 375 67 42 chr1 3900401 3900521 -238763832 - L3b LINE CR1 -73 1510 1388 334 263 202 0 chr1 3900654 3900768 -238763585 - L1ME4a LINE L1 -215 5906 5770 1976 126 23 19 chr1 3900887 3901197 -238763156 - AluSx SINE Alu -1 311 1 803 141 0 8 chr1 3901437 3901565 -238762788 + FLAM_C SINE Alu 13 139 -4 2343 68 3 0 chr1 3902936 3903230 -238761123 + AluY SINE Alu 2 296 -15 193 274 27 27 chr1 3903303 3903376 -238760977 + MIR3 SINE MIR 124 196 -12 2332 84 7 0 chr1 3903488 3903798 -238760555 - AluSp SINE Alu -1 312 1 455 172 0 0 chr1 3903868 3903932 -238760421 + T-rich Low_complexity Low_complexity 1 64 0 736 260 0 9 chr1 3904032 3904263 -238760090 - HERVFH21 LTR ERV1 -1618 6781 6553 4523 144 14 4 chr1 3904598 3905473 -238758880 - HERVFH21 LTR ERV1 -1200 5329 4572 1606 264 50 23 chr1 3905510 3905933 -238758420 - HERVFH21 LTR ERV1 -64 6465 6024 2107 107 0 13 chr1 3905933 3906233 -238758120 + AluY SINE Alu 1 296 -15 1606 264 50 23 chr1 3906233 3906329 -238758024 - HERVFH21 LTR ERV1 -505 6024 5932 1676 115 146 6 chr1 3906335 3906673 -238757680 - LTR14B LTR ERVK -1 607 318 2280 94 0 0 chr1 3906673 3906971 -238757382 - AluY SINE Alu -13 298 1 1676 115 146 6 chr1 3906971 3907085 -238757268 - LTR14B LTR ERVK -290 318 1 4681 259 4 14 chr1 3907087 3908298 -238756055 - HERVFH21 LTR ERV1 -648 7751 6553 5085 139 13 3 chr1 3908633 3909591 -238754762 - HERVFH21 LTR ERV1 -1200 5329 4540 2130 251 17 0 chr1 3909585 3910108 -238754245 - HERVFH21 LTR ERV1 -2649 3880 3349 * 812 112 0 0 chr1 3910108 3910224 -238754129 - AluSg/x SINE Alu -4 306 191 11754 197 22 38 chr1 3910224 3911113 -238753240 - HERVFH21 LTR ERV1 -3172 3357 2455 2238 74 3 0 chr1 3911113 3911397 -238752956 - AluY SINE Alu -26 285 1 11754 197 22 38 chr1 3911397 3911783 -238752570 - HERVFH21 LTR ERV1 -4074 2455 2064 2522 47 3 0 chr1 3911783 3912083 -238752270 + AluY SINE Alu 1 301 -10 11754 197 22 38 chr1 3912083 3912671 -238751682 - HERVFH21 LTR ERV1 -4465 2064 1468 2340 73 0 19 chr1 3912671 3912986 -238751367 + AluY SINE Alu 1 309 -2 11754 197 22 38 chr1 3912986 3914608 -238749745 - HERVFH21 LTR ERV1 -5061 1468 5 576 143 33 44 chr1 3914608 3914786 -238749567 - LTR21B LTR ERV1 0 438 310 777 191 77 59 chr1 3914954 3915174 -238749179 + MLT2D LTR ERVL 188 411 -3 182 183 17 100 chr1 3915289 3915349 -238749004 + L3 LINE CR1 1516 1570 -7 1778 140 37 0 chr1 3916050 3916322 -238748031 + AluSx SINE Alu 1 282 -30 1791 155 31 3 chr1 3916768 3917059 -238747294 - AluJo SINE Alu -9 303 5 253 413 18 6 chr1 3917503 3917670 -238746683 + L2 LINE L2 2545 2713 -601 2123 109 0 3 chr1 3917683 3917976 -238746377 + AluSg SINE Alu 6 297 -13 2714 89 105 7 chr1 3918036 3918156 -238746197 - MER1A DNA MER1_type -2173 529 422 2419 65 0 3 chr1 3918156 3918466 -238745887 - AluY SINE Alu -2 309 1 2714 89 105 7 chr1 3918466 3918794 -238745559 - MER1A DNA MER1_type -2280 422 37 317 356 97 8 chr1 3918803 3919050 -238745303 + L2 LINE L2 2830 3098 -174 199 265 59 0 chr1 3919051 3919119 -238745234 + L2 LINE L2 3200 3271 -1 1888 107 7 15 chr1 3920016 3920189 -238744164 - AluSx SINE Alu 0 308 136 2350 81 0 7 chr1 3920189 3920497 -238743856 - AluY SINE Alu -5 306 1 1888 107 7 15 chr1 3920497 3920619 -238743734 - AluSx SINE Alu -172 136 15 2096 94 31 3 chr1 3921757 3922043 -238742310 + AluSx SINE Alu 3 296 -16 2439 71 0 10 chr1 3922046 3922356 -238741997 + AluSq SINE Alu 1 307 -6 189 0 0 0 chr1 3923286 3923307 -238741046 + (CTG)n Simple_repeat Simple_repeat 2 22 0 1935 141 0 20 chr1 3925879 3926183 -238738170 + AluJb SINE Alu 1 298 -14 850 131 0 44 chr1 3927336 3927473 -238736880 - FLAM_C SINE Alu -2 131 1 2113 127 3 3 chr1 3927484 3927792 -238736561 - AluSc SINE Alu -1 308 1 2265 98 3 0 chr1 3927796 3928102 -238736251 - AluSg SINE Alu -3 307 1 2020 117 10 10 chr1 3928104 3928271 -238736082 - AluSg SINE Alu -10 300 131 2221 99 0 16 chr1 3928271 3928585 -238735768 - AluSg SINE Alu -1 309 1 2020 117 10 10 chr1 3928585 3928717 -238735636 - AluSg SINE Alu -178 132 1 584 251 61 0 chr1 3928723 3928886 -238735467 - MER3 DNA MER1_type -83 126 1 541 286 129 40 chr1 3929393 3930071 -238734282 - L2 LINE L2 -19 3294 2554 780 188 0 0 chr1 3934444 3934577 -238729776 + AluSg/x SINE Alu 172 304 -6 749 186 0 0 chr1 3934925 3935043 -238729310 - AluJb SINE Alu -194 118 1 313 308 14 7 chr1 3938426 3938538 -238725815 - MIR SINE MIR -51 211 100 2241 88 0 14 chr1 3938924 3939221 -238725132 + AluY SINE Alu 1 293 -18 1639 136 9 99 chr1 3939250 3939573 -238724780 + AluJo SINE Alu 1 294 -18 488 241 49 12 chr1 3939586 3939748 -238724605 + L2 LINE L2 2856 3023 -290 229 250 38 25 chr1 3939781 3939861 -238724492 + MIR SINE MIR 75 155 -107 1509 119 5 0 chr1 3940621 3940839 -238723514 + AluSx SINE Alu 1 219 -93 759 130 0 32 chr1 3940839 3940962 -238723391 + AluSg/x SINE Alu 188 306 -6 531 224 133 12 chr1 3941001 3941166 -238723187 - MER58 DNA MER1_type -2177 243 59 745 197 0 22 chr1 3942653 3942790 -238721563 + AluJo SINE Alu 1 134 -178 2026 123 0 0 chr1 3942791 3943068 -238721285 + AluSp SINE Alu 1 277 -36 201 39 0 0 chr1 3943078 3943104 -238721249 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2361 80 0 3 chr1 3943104 3943415 -238720938 + AluY SINE Alu 1 310 -1 181 217 22 22 chr1 3943429 3943475 -238720878 + MIR SINE MIR 106 151 -111 260 277 0 85 chr1 3944452 3944550 -238719803 + L1ME3A LINE L1 6052 6138 -32 1943 149 10 0 chr1 3944550 3944846 -238719507 - AluJb SINE Alu -13 299 1 260 277 0 85 chr1 3944846 3944877 -238719476 + L1ME3A LINE L1 6138 6170 0 30 77 0 0 chr1 3947476 3947541 -238716812 + GC_rich Low_complexity Low_complexity 1 65 0 1396 117 120 62 chr1 3949244 3949518 -238714835 + AluSx SINE Alu 1 290 -12 548 214 179 29 chr1 3949530 3949670 -238714683 + FRAM SINE Alu 1 161 -5 515 133 133 0 chr1 3949962 3950052 -238714301 - AluSc SINE Alu -17 292 191 769 124 0 0 chr1 3950054 3950167 -238714186 + AluSg/x SINE Alu 196 308 -2 2141 99 3 3 chr1 3950353 3950646 -238713707 - AluSx SINE Alu -19 293 1 1744 163 0 14 chr1 3950654 3950949 -238713404 - AluJb SINE Alu -21 291 1 1373 133 24 0 chr1 3950977 3951187 -238713166 + AluSg/x SINE Alu 84 298 -12 1989 128 21 0 chr1 3951350 3951638 -238712715 - AluSx SINE Alu -14 298 5 1743 157 14 7 chr1 3951759 3952053 -238712300 - AluSx SINE Alu -12 300 5 2091 128 7 0 chr1 3952071 3952367 -238711986 - AluSg SINE Alu -12 298 1 1519 143 85 51 chr1 3952640 3952776 -238711577 + AluJb SINE Alu 1 131 -181 2080 82 4 0 chr1 3952776 3953056 -238711297 + AluY SINE Alu 31 311 0 1519 143 85 51 chr1 3953056 3953212 -238711141 + AluJb SINE Alu 131 303 -9 2205 91 0 26 chr1 3953212 3953349 -238711004 + AluSx SINE Alu 1 140 -172 1966 114 4 4 chr1 3953349 3953687 -238710666 + AluSc SINE Alu 1 338 0 2205 91 0 26 chr1 3953687 3953857 -238710496 + AluSx SINE Alu 140 301 -11 2078 85 0 0 chr1 3954377 3954647 -238709706 - AluSc SINE Alu -24 285 16 2031 124 10 3 chr1 3954913 3955212 -238709141 + AluSq SINE Alu 3 303 -10 844 162 26 26 chr1 3955403 3955594 -238708759 + AluJo SINE Alu 4 194 -118 728 67 0 0 chr1 3955597 3955687 -238708666 - AluSp/q SINE Alu -16 297 208 816 78 0 0 chr1 3955691 3955793 -238708560 - AluS SINE Alu -211 102 1 2187 89 3 0 chr1 3955934 3956227 -238708126 + AluSc SINE Alu 1 294 -15 198 0 0 0 chr1 3956562 3956584 -238707769 + (CAA)n Simple_repeat Simple_repeat 2 23 0 201 143 0 0 chr1 3956621 3956656 -238707697 - MIR SINE MIR -66 142 108 2471 54 0 0 chr1 3956657 3956954 -238707399 - AluSg SINE Alu -13 297 1 211 306 0 25 chr1 3957857 3957978 -238706375 + (CCG)n Simple_repeat Simple_repeat 1 118 0 * 246 210 8 89 chr1 3957890 3958014 -238706339 + C-rich Low_complexity Low_complexity 6 119 0 217 196 0 89 chr1 3958453 3958565 -238705788 + C-rich Low_complexity Low_complexity 4 105 0 25 31 0 0 chr1 3959078 3959110 -238705243 + GC_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr1 3959244 3959270 -238705083 + GC_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr1 3959627 3959650 -238704703 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 3959683 3959733 -238704620 + GC_rich Low_complexity Low_complexity 1 50 0 2362 60 3 3 chr1 3960529 3960829 -238703524 - AluSg SINE Alu -9 301 2 1719 130 69 0 chr1 3961611 3961887 -238702466 - AluSx SINE Alu -17 295 1 1913 116 33 10 chr1 3961931 3962232 -238702121 - AluSg SINE Alu -2 308 1 490 254 40 20 chr1 3962305 3962467 -238701886 - MIR SINE MIR -62 146 12 1838 148 10 0 chr1 3962645 3962936 -238701417 - AluJb SINE Alu -18 294 1 694 163 106 0 chr1 3962937 3963060 -238701293 - AluJo SINE Alu -176 136 1 2163 115 0 10 chr1 3963137 3963450 -238700903 - AluSx SINE Alu -2 310 1 2022 98 42 7 chr1 3963856 3964142 -238700211 - AluSq SINE Alu -17 296 1 205 179 0 0 chr1 3964495 3964534 -238699819 + GA-rich Low_complexity Low_complexity 2 40 0 1868 147 7 7 chr1 3965108 3965241 -238699112 + AluJo SINE Alu 1 133 -179 2220 80 6 45 chr1 3965241 3965553 -238698800 + AluSg SINE Alu 1 300 -10 1868 147 7 7 chr1 3965553 3965719 -238698634 + AluJo SINE Alu 132 300 -12 2116 117 0 10 chr1 3968768 3969076 -238695277 - AluSq SINE Alu -8 305 1 24 0 0 0 chr1 3969942 3969966 -238694387 + GC_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr1 3970249 3970273 -238694080 + (CCCGG)n Simple_repeat Simple_repeat 3 26 0 212 306 45 45 chr1 3970300 3970411 -238693942 + L2 LINE L2 1724 1834 -1480 362 239 91 77 chr1 3970424 3970529 -238693824 - L1ME3A LINE L1 -9 6161 6059 1968 124 7 7 chr1 3970529 3970827 -238693526 + AluJo SINE Alu 1 298 -14 362 239 91 77 chr1 3970827 3970930 -238693423 - L1ME3A LINE L1 -111 6059 5950 363 230 32 97 chr1 3970934 3971059 -238693294 - L1ME3A LINE L1 -352 5826 5719 2204 90 0 26 chr1 3971059 3971369 -238692984 + AluSx SINE Alu 1 302 -10 363 230 32 97 chr1 3971369 3971460 -238692893 - L1ME3A LINE L1 -459 5719 5624 445 290 172 56 chr1 3971533 3971876 -238692477 + L2 LINE L2 1952 2254 -1060 1987 134 3 0 chr1 3971876 3972168 -238692185 - AluSx SINE Alu -19 293 1 445 290 172 56 chr1 3972168 3972342 -238692011 + L2 LINE L2 2254 2586 -728 247 360 198 7 chr1 3972483 3972761 -238691592 + L2 LINE L2 2966 3296 -17 1739 109 4 0 chr1 3973423 3973661 -238690692 + AluSq SINE Alu 1 239 -74 330 343 171 0 chr1 3973897 3974247 -238690106 + L2 LINE L2 2903 3312 -1 2163 95 14 3 chr1 3975077 3975373 -238688980 - AluSx SINE Alu -11 301 3 814 191 0 0 chr1 3975381 3975512 -238688841 - FLAM_C SINE Alu -2 131 1 1553 185 3 39 chr1 3975512 3975820 -238688533 - AluJo SINE Alu -15 297 1 1253 157 0 27 chr1 3975849 3976072 -238688281 + AluJo SINE Alu 1 217 -95 426 39 0 0 chr1 3976073 3976125 -238688228 + AluSg/x SINE Alu 82 133 -177 1869 108 72 4 chr1 3976126 3976404 -238687949 + AluSq SINE Alu 1 297 -16 1268 175 15 105 chr1 3976406 3976731 -238687622 + AluJb SINE Alu 1 296 -16 2013 113 0 27 chr1 3978130 3978430 -238685923 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr1 3980064 3980088 -238684265 + AT_rich Low_complexity Low_complexity 1 24 0 225 208 21 0 chr1 3981156 3981204 -238683149 + L2 LINE L2 3223 3271 -1 1969 154 0 3 chr1 3981354 3981653 -238682700 - AluJb SINE Alu -14 298 1 335 246 154 51 chr1 3982320 3982495 -238681858 + Charlie8 DNA MER1_type 77 269 -2148 797 128 0 38 chr1 3983182 3983315 -238681038 - FLAM_C SINE Alu 0 143 16 2232 102 0 7 chr1 3983832 3984135 -238680218 - AluSx SINE Alu -11 301 1 546 317 43 0 chr1 3984228 3984389 -238679964 - MIR SINE MIR -3 259 92 226 187 227 53 chr1 3984975 3985050 -238679303 + L1ME LINE L1 570 657 -5977 1675 112 73 15 chr1 3985053 3985312 -238679041 + AluSq SINE Alu 1 274 -39 349 278 115 27 chr1 3985313 3985580 -238678773 + L1ME LINE L1 1460 2198 -4447 402 270 80 58 chr1 3985587 3985607 -238678746 + L1ME LINE L1 2730 2748 -3896 2128 97 35 0 chr1 3985607 3985895 -238678458 + AluSq SINE Alu 1 298 -15 402 270 80 58 chr1 3985895 3985910 -238678443 + L1ME LINE L1 2748 2761 -3883 246 32 0 0 chr1 3985910 3985941 -238678412 + (CA)n Simple_repeat Simple_repeat 2 32 0 402 270 80 58 chr1 3985941 3986041 -238678312 + L1ME LINE L1 2761 2869 -3775 706 157 50 25 chr1 3986041 3986162 -238678191 - FRAM SINE Alu -15 161 38 1313 286 151 67 chr1 3986285 3987061 -238677292 - L2 LINE L2 -19 3294 2585 847 173 0 0 chr1 3987061 3987194 -238677159 + FLAM_C SINE Alu 1 133 0 1313 286 151 67 chr1 3987194 3987781 -238676572 - L2 LINE L2 -728 2585 1797 2424 57 3 0 chr1 3987781 3988078 -238676275 - AluY SINE Alu -13 298 1 1313 286 151 67 chr1 3988078 3988105 -238676248 - L2 LINE L2 -1516 1797 1774 1870 76 0 0 chr1 3988382 3988618 -238675735 - AluY SINE Alu -20 291 56 2145 102 10 20 chr1 3988632 3988937 -238675416 - AluSx SINE Alu -10 302 1 501 310 7 0 chr1 3989785 3989927 -238674426 + Charlie8 DNA MER1_type 78 220 -2197 274 291 172 0 chr1 3990849 3991000 -238673353 - MER5B DNA MER1_type 0 178 2 * 336 240 70 47 chr1 3991000 3991116 -238673237 + MER5B DNA MER1_type 60 178 0 941 183 56 10 chr1 3991380 3991577 -238672776 + AluJb SINE Alu 4 209 -103 2139 99 23 13 chr1 3991582 3991886 -238672467 - AluSq SINE Alu -6 307 1 315 191 16 0 chr1 3991893 3991956 -238672397 + Tigger5 DNA MER2_type 2260 2323 0 2298 95 10 0 chr1 3992041 3992347 -238672006 + AluSc SINE Alu 1 309 0 250 247 39 26 chr1 3992567 3992644 -238671709 - MER5A DNA MER1_type -1 188 111 2340 84 0 3 chr1 3992660 3992959 -238671394 - AluSx SINE Alu -14 298 1 2008 145 3 0 chr1 3992963 3993259 -238671094 - AluJb SINE Alu -15 297 1 751 236 36 0 chr1 3993507 3993672 -238670681 - AluJb SINE Alu -21 291 121 2257 60 35 0 chr1 3993689 3993972 -238670381 - AluY SINE Alu -18 293 1 1564 113 18 0 chr1 3994216 3994438 -238669915 - AluSg/x SINE Alu -15 297 72 1512 152 86 4 chr1 3994507 3994776 -238669577 + AluJb SINE Alu 3 293 -19 1609 210 0 0 chr1 3994798 3995093 -238669260 + AluJo SINE Alu 12 306 -6 2167 110 3 7 chr1 3995095 3995404 -238668949 + AluSx SINE Alu 1 308 -4 1449 112 0 40 chr1 3996934 3997157 -238667196 - AluSq SINE Alu -13 300 87 2282 66 0 62 chr1 3999280 3999600 -238664753 - AluSc SINE Alu -9 300 1 1704 136 54 4 chr1 4000044 4000323 -238664030 + AluSx SINE Alu 1 293 -19 2272 96 0 0 chr1 4000325 4000626 -238663727 + AluSg SINE Alu 1 301 -9 1082 227 103 22 chr1 4000626 4001100 -238663253 - MER114 LTR ERV -70 578 2 1385 171 0 113 chr1 4001100 4001428 -238662925 + AluJb SINE Alu 1 291 -21 445 232 92 109 chr1 4001531 4002092 -238662261 + MLT1H1 LTR MaLR 1 548 -1 2313 56 0 3 chr1 4002161 4002448 -238661905 - AluY SINE Alu -25 286 1 890 153 82 0 chr1 4002485 4002655 -238661698 - Tigger1 DNA MER2_type -491 1927 1744 601 290 55 21 chr1 4002662 4002952 -238661401 + HAL1 LINE L1 1880 2179 -328 505 258 31 25 chr1 4002994 4003153 -238661200 + HAL1 LINE L1 2346 2505 -2 1018 260 58 68 chr1 4003750 4003981 -238660372 + L2 LINE L2 2833 3065 -248 1920 127 3 7 chr1 4003981 4004273 -238660080 + AluSq SINE Alu 1 291 -22 2403 54 3 13 chr1 4004279 4004593 -238659760 + AluY SINE Alu 1 311 0 1018 260 58 68 chr1 4004593 4004665 -238659688 + L2 LINE L2 3070 3141 -172 2135 105 3 0 chr1 4004665 4004959 -238659394 - AluSx SINE Alu -17 295 1 1018 260 58 68 chr1 4004959 4005132 -238659221 + L2 LINE L2 3141 3312 -1 225 317 244 16 chr1 4005228 4005474 -238658879 - L3 LINE CR1 -756 821 520 398 271 37 0 chr1 4005529 4005636 -238658717 - L1MA9 LINE L1 -22 6290 6180 1043 109 0 152 chr1 4006454 4006684 -238657669 - AluJb SINE Alu -31 281 87 2006 100 0 0 chr1 4006696 4006967 -238657386 - AluSq SINE Alu -12 301 31 251 250 0 0 chr1 4006967 4007019 -238657334 + LTR30 LTR ERV1 1 52 -670 287 125 0 21 chr1 4007027 4007075 -238657278 + LTR12 LTR ERV1 138 184 -530 1402 82 11 149 chr1 4007075 4007343 -238657010 + LTR12 LTR ERV1 55 285 -429 352 212 35 0 chr1 4007344 4007429 -238656924 + LTR30 LTR ERV1 556 643 -79 633 135 42 0 chr1 4007429 4007525 -238656828 + LTR12 LTR ERV1 613 712 -2 230 194 0 0 chr1 4007525 4007561 -238656792 - AluSq SINE Alu -267 36 1 264 277 54 31 chr1 4008364 4008494 -238655859 - MIR SINE MIR -60 148 16 2449 66 3 0 chr1 4008736 4009041 -238655312 - AluY SINE Alu -5 306 1 1667 174 3 3 chr1 4009581 4009868 -238654485 - AluJo SINE Alu -21 291 5 2123 92 0 46 chr1 4010880 4011205 -238653148 - AluSx SINE Alu -2 310 1 2158 85 7 10 chr1 4012636 4012941 -238651412 - AluY SINE Alu -7 304 1 784 191 0 0 chr1 4013104 4013235 -238651118 - FLAM_C SINE Alu 0 133 3 2179 122 0 0 chr1 4013408 4013719 -238650634 + AluSx SINE Alu 1 311 -1 2153 81 0 11 chr1 4013731 4014081 -238650272 + AluSq SINE Alu 1 347 0 1807 76 0 20 chr1 4014460 4014711 -238649642 - AluY SINE Alu -15 296 51 204 40 0 0 chr1 4015697 4015722 -238648631 + (ATTTG)n Simple_repeat Simple_repeat 2 26 0 2222 73 21 0 chr1 4015753 4016039 -238648314 - AluY SINE Alu -19 292 1 1991 96 43 3 chr1 4016040 4016322 -238648031 - AluY SINE Alu -17 294 2 2058 144 0 0 chr1 4016326 4016638 -238647715 - AluSx SINE Alu 0 312 1 1783 117 7 4 chr1 4017456 4017729 -238646624 + AluSq SINE Alu 40 313 0 398 106 0 26 chr1 4017729 4017806 -238646547 + AluJ SINE Alu 68 130 -172 350 294 59 10 chr1 4017902 4018004 -238646349 + MIR3 SINE MIR 82 188 -20 1466 200 27 21 chr1 4018005 4018335 -238646018 - L1MD3 LINE L1 -6 7989 7658 2218 103 3 0 chr1 4018782 4019083 -238645270 + AluSx SINE Alu 1 302 -10 1023 156 6 0 chr1 4019083 4019243 -238645110 + AluJ SINE Alu 134 294 -18 1607 176 10 26 chr1 4019913 4020226 -238644127 - AluJb SINE Alu -4 308 1 497 230 197 0 chr1 4020704 4020891 -238643462 - Charlie8 DNA MER1_type -2131 286 40 1651 152 0 0 chr1 4020901 4021170 -238643183 + AluJo SINE Alu 1 269 -43 2031 89 62 7 chr1 4021395 4021687 -238642666 + AluSp SINE Alu 1 308 -5 1764 149 3 17 chr1 4021796 4022098 -238642255 - AluJo SINE Alu -12 300 3 265 340 21 7 chr1 4022159 4022293 -238642060 - MIR SINE MIR -64 144 20 273 242 55 117 chr1 4022619 4022747 -238641606 - MIR3 SINE MIR -39 169 50 1679 174 14 0 chr1 4023176 4023452 -238640901 - AluJo SINE Alu -32 280 1 25 0 0 0 chr1 4024684 4024709 -238639644 + AT_rich Low_complexity Low_complexity 1 25 0 922 121 27 0 chr1 4024709 4024858 -238639495 - L1MB4 LINE L1 -6 6174 6022 180 0 0 0 chr1 4026667 4026687 -238637666 + (A)n Simple_repeat Simple_repeat 1 20 0 1325 204 15 4 chr1 4027149 4027419 -238636934 + AluJb SINE Alu 1 273 -39 449 312 99 14 chr1 4027763 4027984 -238636369 + MIR SINE MIR 12 251 -11 336 287 73 30 chr1 4027972 4028136 -238636217 + MIR SINE MIR 90 260 -2 * 373 192 0 0 chr1 4028257 4028330 -238636023 + L1ME3A LINE L1 6090 6162 -8 2210 106 0 3 chr1 4028582 4028885 -238635468 - AluSx SINE Alu -10 302 1 485 246 9 0 chr1 4029379 4029489 -238634864 + L1M4 LINE L1 2718 2828 -3318 830 155 88 44 chr1 4029489 4029670 -238634683 + AluJo SINE Alu 1 189 -123 1823 196 64 41 chr1 4029738 4029912 -238634441 + Charlie1 DNA MER1_type 1 170 -2591 2200 158 136 2 chr1 4029912 4030330 -238634023 + MER101 LTR ERV1 1 474 0 1823 196 64 41 chr1 4030330 4030639 -238633714 + Charlie1 DNA MER1_type 170 495 -2266 635 97 35 53 chr1 4030609 4030723 -238633630 + Charlie1 DNA MER1_type 2618 2729 -32 * 278 170 38 0 chr1 4030825 4030878 -238633475 + Charlie1 DNA MER1_type 2707 2761 0 * 986 266 110 30 chr1 4030878 4031240 -238633113 - MLT1I LTR MaLR -16 393 3 2463 53 0 3 chr1 4031858 4032160 -238632193 - AluY SINE Alu -10 301 1 462 256 64 8 chr1 4033377 4033502 -238630851 - L2 LINE L2 -4 3268 3137 225 377 91 32 chr1 4033544 4033918 -238630435 - L2 LINE L2 -502 2812 2417 1879 88 55 4 chr1 4034019 4034293 -238630060 + AluSp SINE Alu 11 298 -15 312 294 69 0 chr1 4034473 4034575 -238629778 - MIR SINE MIR -66 196 88 288 311 198 6 chr1 4034837 4035004 -238629349 - MIR SINE MIR -43 219 21 1669 55 0 0 chr1 4035148 4035350 -238629003 + AluY SINE Alu 3 204 -107 2286 93 0 0 chr1 4037113 4037414 -238626939 - AluSp SINE Alu -12 301 1 1901 126 7 27 chr1 4037416 4037717 -238626636 - AluSx SINE Alu -17 295 1 2045 99 0 11 chr1 4037903 4038185 -238626168 - AluSg SINE Alu -31 279 1 23 0 0 0 chr1 4038185 4038208 -238626145 + AT_rich Low_complexity Low_complexity 1 23 0 612 198 0 0 chr1 4038221 4038322 -238626031 - FRAM SINE Alu -24 152 52 843 157 119 27 chr1 4038322 4038338 -238626015 + LTR36 LTR ERV1 3 16 -595 2019 119 13 3 chr1 4038338 4038640 -238625713 - AluSx SINE Alu -7 305 1 843 157 119 27 chr1 4038640 4038808 -238625545 + LTR36 LTR ERV1 16 204 -407 908 234 172 7 chr1 4038842 4039115 -238625238 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 4039166 4039187 -238625166 + AT_rich Low_complexity Low_complexity 1 21 0 2304 64 0 32 chr1 4039187 4039500 -238624853 + AluY SINE Alu 1 303 -8 1236 79 12 0 chr1 4039502 4039666 -238624687 + AluY SINE Alu 135 300 -11 747 141 0 62 chr1 4039666 4039794 -238624559 - AluJo/FLAM SINE Alu -182 130 11 187 298 35 114 chr1 4039854 4040013 -238624340 - MIR SINE MIR 0 262 129 1988 111 0 57 chr1 4040013 4040328 -238624025 + AluSg SINE Alu 1 297 -13 187 298 35 114 chr1 4040328 4040423 -238623930 - MIR SINE MIR -133 129 28 239 336 79 14 chr1 4040456 4040581 -238623772 - MIR SINE MIR -61 147 33 1758 123 38 131 chr1 4041828 4042195 -238622158 - MER1B DNA MER1_type -4 333 1 2185 47 54 0 chr1 4042313 4042592 -238621761 - AluY SINE Alu -17 294 1 27 29 0 0 chr1 4043129 4043163 -238621190 + AT_rich Low_complexity Low_complexity 1 34 0 1606 159 0 4 chr1 4043163 4043427 -238620926 + AluJb SINE Alu 1 263 -49 270 138 0 0 chr1 4043435 4043493 -238620860 + (TA)n Simple_repeat Simple_repeat 1 58 0 1625 159 35 3 chr1 4043527 4043817 -238620536 + AluJo SINE Alu 1 299 -13 924 57 0 16 chr1 4044147 4044269 -238620084 + L1PA8 LINE L1 6050 6169 -3 1450 156 62 127 chr1 4044434 4044915 -238619438 + LTR7 LTR ERV1 1 450 0 849 288 17 13 chr1 4044975 4045211 -238619142 + MIR SINE MIR 1 237 -25 1986 87 24 20 chr1 4046637 4046935 -238617418 - AluSx SINE Alu -13 299 1 2483 62 0 0 chr1 4047965 4048272 -238616081 - AluSg SINE Alu -3 307 1 2595 63 0 19 chr1 4048342 4048659 -238615694 - AluY SINE Alu 0 311 1 1828 180 6 3 chr1 4049165 4049476 -238614877 - AluJo SINE Alu 0 312 1 2236 133 0 0 chr1 4049676 4049978 -238614375 - AluSx SINE Alu -10 302 1 2228 112 0 3 chr1 4049980 4050275 -238614078 - AluSx SINE Alu -18 294 1 451 141 0 0 chr1 4050445 4050523 -238613830 - MER53 DNA DNA -1 188 111 1955 151 0 7 chr1 4050529 4050828 -238613525 + AluJb SINE Alu 1 297 -15 222 37 0 0 chr1 4050843 4050870 -238613483 + (CA)n Simple_repeat Simple_repeat 2 28 0 990 171 5 50 chr1 4050927 4051126 -238613227 - AluSg/x SINE Alu -1 309 120 1220 303 85 38 chr1 4052125 4052968 -238611385 - L2 LINE L2 -129 3184 2307 2037 92 100 0 chr1 4053010 4053281 -238611072 - AluSx SINE Alu -14 298 1 375 23 0 0 chr1 4053461 4053505 -238610848 + (TC)n Simple_repeat Simple_repeat 2 45 0 861 214 0 19 chr1 4053505 4053659 -238610694 - FRAM SINE Alu -15 151 1 418 318 8 29 chr1 4053846 4054091 -238610262 - L1MEc LINE L1 -4612 1784 1545 390 366 46 6 chr1 4054119 4054294 -238610059 - L1MEc LINE L1 -4971 1234 1053 2333 115 0 0 chr1 4054334 4054639 -238609714 + AluSx SINE Alu 2 306 -6 2107 137 38 47 chr1 4054640 4054796 -238609557 - MER65A LTR ERV1 0 445 289 2324 100 3 13 chr1 4054796 4055106 -238609247 + AluSx SINE Alu 5 311 -1 2107 137 38 47 chr1 4055106 4055393 -238608960 - MER65A LTR ERV1 -156 289 6 810 241 22 13 chr1 4055408 4055640 -238608713 - L1ME1 LINE L1 -26 6140 5907 626 250 158 45 chr1 4055652 4056056 -238608297 - HAL1 LINE L1 -676 1831 1382 2071 114 4 0 chr1 4056063 4056370 -238607983 - AluSx SINE Alu 0 308 1 2438 82 3 0 chr1 4056552 4056856 -238607497 - AluY SINE Alu -2 309 5 1036 203 31 8 chr1 4057167 4057423 -238606930 + MER44D DNA MER2_type 289 605 0 981 199 38 9 chr1 4057671 4057882 -238606471 - MLT1A2 LTR MaLR 0 374 158 1220 135 0 11 chr1 4057882 4058067 -238606286 - FRAM SINE Alu 0 176 1 1122 82 0 0 chr1 4058081 4058216 -238606137 + AluSq/x SINE Alu 1 135 -178 1766 156 61 10 chr1 4058216 4058511 -238605842 + AluJb SINE Alu 1 310 -2 549 236 159 13 chr1 4062197 4062354 -238601999 - MER5A DNA MER1_type -6 183 4 2967 63 15 5 chr1 4062537 4062934 -238601419 + MLT2A1 LTR ERVL 1 401 -43 243 109 16 31 chr1 4062934 4062998 -238601355 + (TA)n Simple_repeat Simple_repeat 1 63 0 1247 96 0 12 chr1 4063299 4063466 -238600887 + AluSp SINE Alu 149 313 0 633 237 37 93 chr1 4063989 4064053 -238600300 + MIR SINE MIR 47 113 -149 1920 161 3 3 chr1 4064053 4064357 -238599996 - AluJb SINE Alu -2 310 7 633 237 37 93 chr1 4064357 4064507 -238599846 + MIR SINE MIR 113 249 -13 1491 108 45 9 chr1 4064507 4064624 -238599729 + MER30 DNA MER1_type 1 112 -118 2217 119 7 0 chr1 4064624 4064918 -238599435 + AluSx SINE Alu 1 296 -16 1491 108 45 9 chr1 4064918 4065022 -238599331 + MER30 DNA MER1_type 112 230 0 228 35 0 0 chr1 4065217 4065246 -238599107 + (TA)n Simple_repeat Simple_repeat 1 29 0 229 56 111 0 chr1 4065246 4065282 -238599071 + MLT2A1 LTR ERVL 405 444 0 339 302 95 9 chr1 4065387 4065503 -238598850 + MIR3 SINE MIR 12 137 -71 2065 188 26 75 chr1 4065515 4065608 -238598745 + MLT1D LTR MaLR 1 97 -408 2346 116 3 0 chr1 4065608 4065919 -238598434 - AluSx SINE Alu 0 312 1 2065 188 26 75 chr1 4065919 4066356 -238597997 + MLT1D LTR MaLR 97 505 0 1923 128 52 3 chr1 4066400 4066688 -238597665 + AluSq SINE Alu 9 310 -3 396 0 0 0 chr1 4067148 4067192 -238597161 + (CA)n Simple_repeat Simple_repeat 1 44 0 760 189 0 24 chr1 4067204 4067331 -238597022 + FLAM_C SINE Alu 2 125 -18 4564 23 0 0 chr1 4067489 4067987 -238596366 + SVA Other Other 897 1394 0 25 0 0 0 chr1 4067987 4068012 -238596341 + AT_rich Low_complexity Low_complexity 1 25 0 2430 61 0 0 chr1 4068027 4068327 -238596026 + AluY SINE Alu 1 300 0 409 195 34 119 chr1 4068328 4068367 -238595986 - Tigger7 DNA MER2_type -622 111 70 1749 201 3 0 chr1 4068367 4068665 -238595688 - AluJo SINE Alu -13 299 1 409 195 34 119 chr1 4068665 4068743 -238595610 - Tigger7 DNA MER2_type -663 70 4 2200 126 10 0 chr1 4068878 4069187 -238595166 - AluSx SINE Alu 0 312 1 2574 47 0 3 chr1 4069197 4069496 -238594857 - AluY SINE Alu -13 298 1 384 284 13 52 chr1 4069619 4069774 -238594579 + HAL1 LINE L1 39 187 -2320 231 202 111 40 chr1 4069843 4069942 -238594411 + HAL1 LINE L1 349 454 -2053 513 263 145 63 chr1 4070421 4070631 -238593722 - HAL1 LINE L1 -428 2079 1831 1796 172 0 23 chr1 4070631 4070933 -238593420 - AluJo SINE Alu -17 295 1 513 263 145 63 chr1 4070933 4071053 -238593300 - HAL1 LINE L1 -676 1831 1722 2277 82 10 13 chr1 4071882 4072186 -238592167 + AluSq SINE Alu 1 303 -10 1793 150 56 3 chr1 4072211 4072497 -238591856 - AluSx SINE Alu -11 301 1 2424 89 0 3 chr1 4072781 4073085 -238591268 + AluSx SINE Alu 1 303 -9 217 262 49 0 chr1 4073652 4073713 -238590640 - MIR SINE MIR -99 109 46 1549 212 7 13 chr1 4073754 4074056 -238590297 + AluJo SINE Alu 1 300 -12 238 276 67 29 chr1 4074106 4074211 -238590142 + L2 LINE L2 2697 2805 -509 2284 105 0 29 chr1 4074224 4074539 -238589814 - AluSg SINE Alu -4 306 1 198 303 50 67 chr1 4074539 4074658 -238589695 - MIR SINE MIR -113 149 33 1617 118 0 0 chr1 4074864 4075085 -238589268 + AluSg/x SINE Alu 75 295 -15 380 277 8 116 chr1 4075097 4075267 -238589086 + L2 LINE L2 3075 3207 -106 2215 106 3 37 chr1 4075267 4075589 -238588764 + AluSx SINE Alu 1 311 -1 380 277 8 116 chr1 4075589 4075685 -238588668 + L2 LINE L2 3207 3312 -1 938 196 13 70 chr1 4075828 4076058 -238588295 + MER20 DNA MER1_type 1 217 -2 550 122 61 43 chr1 4076124 4076239 -238588114 + MLT1B LTR MaLR 1 117 -273 1205 143 0 6 chr1 4076240 4076415 -238587938 + AluSq SINE Alu 133 306 -7 277 81 0 0 chr1 4076419 4076456 -238587897 + MLT1B LTR MaLR 122 158 -232 2199 92 20 7 chr1 4076456 4076749 -238587604 - AluSx SINE Alu -15 297 1 1979 158 3 3 chr1 4076749 4077052 -238587301 - AluJb SINE Alu -9 303 1 1679 126 28 82 chr1 4077067 4077121 -238587232 - L1MB3 LINE L1 -7 6176 6121 2246 94 3 0 chr1 4077121 4077409 -238586944 - AluSp SINE Alu -19 294 6 1679 126 28 82 chr1 4077409 4077710 -238586643 - L1MB3 LINE L1 -62 6121 5840 2309 89 7 0 chr1 4077741 4078032 -238586321 + AluSx SINE Alu 3 295 -17 1892 164 0 19 chr1 4078055 4078366 -238585987 + AluJo SINE Alu 1 305 -7 2181 117 0 7 chr1 4079626 4079925 -238584428 + AluSx SINE Alu 1 297 -15 3449 130 29 4 chr1 4079983 4080538 -238583815 + LTR24B LTR ERV1 1 569 -7 528 134 67 148 chr1 4080693 4080842 -238583511 + THE1C LTR MaLR 1 137 -238 348 154 0 0 chr1 4080828 4080880 -238583473 - Alu SINE Alu -13 289 238 * 368 125 16 0 chr1 4080882 4080946 -238583407 + CT-rich Low_complexity Low_complexity 3 67 0 334 161 0 0 chr1 4080952 4081008 -238583345 - Alu SINE Alu 0 302 247 * 1414 135 38 4 chr1 4081005 4081242 -238583111 + THE1C LTR MaLR 131 375 0 649 200 4 109 chr1 4081368 4081598 -238582755 - L1MB7 LINE L1 -11 6173 5968 2217 96 0 4 chr1 4081699 4081979 -238582374 - AluSg SINE Alu -31 279 1 1080 71 0 57 chr1 4081989 4082130 -238582223 - AluSq/x SINE Alu -180 133 1 1971 141 13 13 chr1 4082220 4082526 -238581827 - AluJo SINE Alu -4 308 3 28 0 0 0 chr1 4083126 4083154 -238581199 + AT_rich Low_complexity Low_complexity 1 28 0 866 175 0 138 chr1 4083191 4083298 -238581055 - AluSx SINE Alu -100 212 156 2357 112 0 0 chr1 4083298 4083610 -238580743 - AluSx SINE Alu 0 312 1 866 175 0 138 chr1 4083610 4083748 -238580605 - AluSx SINE Alu -156 156 1 2071 71 26 15 chr1 4084217 4084485 -238579868 - AluSg SINE Alu -5 305 35 1230 217 110 35 chr1 4084538 4084967 -238579386 + MLT1C LTR MaLR 6 466 -1 2515 112 117 5 chr1 4085215 4085600 -238578753 - MSTA LTR MaLR 0 428 1 382 264 91 0 chr1 4086439 4086560 -238577793 + MER94 DNA DNA 3 134 0 2159 114 3 3 chr1 4086562 4086859 -238577494 - AluSx SINE Alu -15 297 1 612 194 8 8 chr1 4086941 4087070 -238577283 + L1MB3 LINE L1 6055 6183 0 1073 269 108 53 chr1 4087080 4087664 -238576689 + L2 LINE L2 2359 2974 -340 328 232 58 14 chr1 4087796 4087865 -238576488 - L1MC4 LINE L1 -1339 6703 6632 1457 138 29 72 chr1 4087871 4088147 -238576206 - AluJb SINE Alu -44 268 5 348 149 0 15 chr1 4088152 4088219 -238576134 + MLT1B LTR MaLR 324 389 -1 34 24 0 0 chr1 4088740 4088781 -238575572 + AT_rich Low_complexity Low_complexity 1 41 0 246 185 56 19 chr1 4090025 4090133 -238574220 + (TA)n Simple_repeat Simple_repeat 1 112 0 900 104 49 0 chr1 4090177 4090321 -238574032 + MLT1B LTR MaLR 29 179 -211 1930 152 7 0 chr1 4090321 4090630 -238573723 + AluJb SINE Alu 1 311 -1 2464 58 0 3 chr1 4091155 4091523 -238572830 - AluY SINE Alu 0 311 1 939 170 0 0 chr1 4091835 4091976 -238572377 + FRAM SINE Alu 4 144 -32 270 0 0 0 chr1 4091981 4092011 -238572342 + (CA)n Simple_repeat Simple_repeat 1 30 0 1075 105 0 0 chr1 4092184 4092317 -238572036 + AluSg SINE Alu 1 133 -177 1598 115 0 25 chr1 4092317 4092552 -238571801 + AluSx SINE Alu 1 229 -83 1109 192 28 17 chr1 4092708 4092999 -238571354 - L1M4 LINE L1 -845 5301 5008 524 131 20 20 chr1 4093004 4093103 -238571250 + LTR24B LTR ERV1 38 136 -440 386 160 117 0 chr1 4093103 4093197 -238571156 - L1M4 LINE L1 -1547 4599 4495 1887 156 0 22 chr1 4093209 4093523 -238570830 - AluJo SINE Alu -1 311 5 2344 109 0 0 chr1 4093533 4093845 -238570508 - AluSx SINE Alu 0 312 1 961 240 81 3 chr1 4093896 4094134 -238570219 - L1M4 LINE L1 -2378 3768 3499 390 21 0 0 chr1 4094134 4094181 -238570172 + (TG)n Simple_repeat Simple_repeat 2 48 0 961 240 81 3 chr1 4094181 4094250 -238570103 - L1M4 LINE L1 -2647 3499 3437 736 129 0 0 chr1 4094290 4094391 -238569962 - AluSg/x SINE Alu -23 286 186 1682 107 0 21 chr1 4094391 4094625 -238569728 + AluSx SINE Alu 1 229 -83 416 182 0 0 chr1 4094660 4094726 -238569627 - AluJ/FLAM SINE Alu -234 78 13 2659 32 3 13 chr1 4095667 4095981 -238568372 + AluY SINE Alu 1 311 0 1117 116 15 30 chr1 4096367 4096565 -238567788 - L1PA16 LINE L1 -1 6165 5971 1562 154 65 31 chr1 4096594 4096886 -238567467 - AluJo SINE Alu -10 302 1 1020 112 0 87 chr1 4096886 4097054 -238567299 - L1PA16 LINE L1 -182 5984 5834 1619 116 39 4 chr1 4097054 4097287 -238567066 + AluSx SINE Alu 58 298 -14 1020 112 0 87 chr1 4097287 4097314 -238567039 - L1PA16 LINE L1 -332 5834 5806 2315 105 3 10 chr1 4097408 4097722 -238566631 - AluSx SINE Alu 0 312 1 322 223 64 0 chr1 4098345 4098439 -238565914 + MLT1L LTR MaLR 503 602 -13 370 185 23 108 chr1 4098567 4098618 -238565735 + MER45A DNA AcHobo 58 112 -1469 1744 162 7 10 chr1 4098618 4098908 -238565445 - AluJo SINE Alu -12 300 12 370 185 23 108 chr1 4098908 4098986 -238565367 + MER45A DNA AcHobo 112 176 -2 942 130 0 0 chr1 4099342 4099496 -238564857 + (CA)n Simple_repeat Simple_repeat 1 154 0 1918 124 47 0 chr1 4099539 4099813 -238564540 + AluSx SINE Alu 1 287 -25 213 307 88 44 chr1 4099846 4099983 -238564370 + L2 LINE L2 3068 3210 -62 1231 180 12 16 chr1 4100393 4100643 -238563710 - AluJo SINE Alu -14 298 50 1972 100 3 3 chr1 4100748 4101047 -238563306 - AluSx SINE Alu -13 299 1 710 199 22 7 chr1 4101386 4101522 -238562831 + AluJo SINE Alu 2 139 -173 1506 183 0 24 chr1 4101523 4101652 -238562701 + AluJo SINE Alu 11 142 -170 2575 36 0 0 chr1 4101652 4101953 -238562400 + AluY SINE Alu 1 301 -10 1506 183 0 24 chr1 4101953 4102118 -238562235 + AluJo SINE Alu 142 298 -14 2235 94 3 0 chr1 4102206 4102504 -238561849 + AluSx SINE Alu 1 299 -13 1616 151 6 58 chr1 4102692 4102835 -238561518 + AluJb SINE Alu 1 124 -188 1808 134 4 7 chr1 4102835 4103143 -238561210 + AluSx SINE Alu 8 314 0 1616 151 6 58 chr1 4103143 4103308 -238561045 + AluJb SINE Alu 124 296 -16 2407 75 3 0 chr1 4103310 4103618 -238560735 + AluSp SINE Alu 1 309 -4 806 154 8 0 chr1 4104042 4104172 -238560181 - FLAM_C SINE Alu -8 135 5 2161 104 3 3 chr1 4104186 4104485 -238559868 - AluSx SINE Alu -13 299 1 472 158 0 13 chr1 4104485 4104561 -238559792 - MER5A DNA MER1_type -114 75 1 2221 81 0 26 chr1 4105085 4105393 -238558960 - AluY SINE Alu -11 300 1 483 153 31 61 chr1 4105393 4105491 -238558862 - AluJo/FLAM SINE Alu -185 127 33 1806 147 13 7 chr1 4105776 4106083 -238558270 - AluJb SINE Alu -3 309 1 3862 171 12 34 chr1 4106180 4106466 -238557887 - L1MB3 LINE L1 -8 6175 5884 1630 146 56 3 chr1 4106466 4106754 -238557599 - AluSq SINE Alu -9 304 2 3862 171 12 34 chr1 4106754 4107166 -238557187 - L1MB3 LINE L1 -299 5884 5491 1822 109 64 7 chr1 4107166 4107449 -238556904 - AluSx SINE Alu -13 299 1 3862 171 12 34 chr1 4107449 4107496 -238556857 - L1MB3 LINE L1 -692 5491 5445 490 290 6 33 chr1 4107914 4108006 -238556347 - MIR SINE MIR -71 191 105 2296 119 129 5 chr1 4108006 4108385 -238555968 + MSTA LTR MaLR 1 426 -2 490 290 6 33 chr1 4108385 4108475 -238555878 - MIR SINE MIR -157 105 14 238 274 65 65 chr1 4108548 4108701 -238555652 + L2 LINE L2 3161 3313 0 2058 119 0 0 chr1 4109072 4109365 -238554988 - AluSx SINE Alu -19 293 1 2078 96 27 7 chr1 4109376 4109668 -238554685 - AluSx SINE Alu -14 298 1 1602 186 0 38 chr1 4109899 4110216 -238554137 - AluJo SINE Alu -7 305 1 207 0 0 0 chr1 4110331 4110354 -238553999 + (T)n Simple_repeat Simple_repeat 1 23 0 228 315 95 0 chr1 4110718 4110827 -238553526 - MIR SINE MIR -29 179 59 2035 113 7 3 chr1 4111089 4111399 -238552954 + AluSq SINE Alu 1 311 -2 735 192 0 0 chr1 4111416 4111541 -238552812 + MLT1B LTR MaLR 266 390 0 31 44 0 0 chr1 4111560 4111605 -238552748 + AT_rich Low_complexity Low_complexity 1 45 0 905 171 0 0 chr1 4111605 4111757 -238552596 - FRAM SINE Alu -23 153 2 302 268 107 0 chr1 4111832 4111944 -238552409 - L2 LINE L2 0 3313 3190 2002 96 0 31 chr1 4112057 4112187 -238552166 + AluSx SINE Alu 5 137 -170 2610 32 0 10 chr1 4112187 4112501 -238551852 + AluY SINE Alu 1 311 0 2002 96 0 31 chr1 4112501 4112682 -238551671 + AluSx SINE Alu 137 307 0 1015 144 6 18 chr1 4112694 4112861 -238551492 + FRAM SINE Alu 1 165 -1 681 167 17 8 chr1 4113483 4113603 -238550750 + MER101 LTR ERV1 354 474 0 * 870 203 86 48 chr1 4113603 4113912 -238550441 + Charlie1 DNA MER1_type 175 495 -2266 628 119 32 63 chr1 4113882 4114008 -238550345 + Charlie1 DNA MER1_type 2618 2739 -22 * 278 170 38 0 chr1 4114077 4114130 -238550223 + Charlie1 DNA MER1_type 2707 2761 0 * 986 266 110 30 chr1 4114130 4114492 -238549861 - MLT1I LTR MaLR -16 393 3 2454 53 0 3 chr1 4115109 4115410 -238548943 - AluY SINE Alu -11 300 1 462 256 64 8 chr1 4116627 4116752 -238547601 - L2 LINE L2 -4 3268 3137 225 377 91 32 chr1 4116794 4117168 -238547185 - L2 LINE L2 -502 2812 2417 1895 84 55 4 chr1 4117269 4117543 -238546810 + AluSp SINE Alu 11 298 -15 312 294 69 0 chr1 4117723 4117825 -238546528 - MIR SINE MIR -66 196 88 288 311 198 6 chr1 4118087 4118254 -238546099 - MIR SINE MIR -43 219 21 1655 59 0 0 chr1 4118398 4118600 -238545753 + AluY SINE Alu 3 204 -107 2294 93 0 0 chr1 4120363 4120665 -238543688 - AluSp SINE Alu -11 302 1 1901 126 7 27 chr1 4120667 4120968 -238543385 - AluSx SINE Alu -17 295 1 2045 99 0 11 chr1 4121154 4121436 -238542917 - AluSg SINE Alu -31 279 1 23 0 0 0 chr1 4121436 4121459 -238542894 + AT_rich Low_complexity Low_complexity 1 23 0 612 198 0 0 chr1 4121472 4121573 -238542780 - FRAM SINE Alu -24 152 52 843 157 119 27 chr1 4121573 4121589 -238542764 + LTR36 LTR ERV1 3 16 -595 2027 119 13 3 chr1 4121589 4121892 -238542461 - AluSx SINE Alu -6 306 1 843 157 119 27 chr1 4121892 4122060 -238542293 + LTR36 LTR ERV1 16 204 -407 908 234 172 7 chr1 4122094 4122367 -238541986 + LTR36 LTR ERV1 294 611 0 21 0 0 0 chr1 4122418 4122439 -238541914 + AT_rich Low_complexity Low_complexity 1 21 0 2296 64 0 32 chr1 4122439 4122751 -238541602 + AluY SINE Alu 1 302 -9 1209 81 12 0 chr1 4122753 4122914 -238541439 + AluY SINE Alu 135 297 -14 739 142 0 63 chr1 4122914 4123041 -238541312 - AluJo/FLAM SINE Alu -183 129 11 187 298 35 114 chr1 4123101 4123260 -238541093 - MIR SINE MIR 0 262 129 2060 116 0 20 chr1 4123260 4123563 -238540790 + AluSg SINE Alu 1 297 -13 187 298 35 114 chr1 4123563 4123658 -238540695 - MIR SINE MIR -133 129 28 239 336 79 14 chr1 4123691 4123816 -238540537 - MIR SINE MIR -61 147 33 1758 123 38 131 chr1 4125063 4125430 -238538923 - MER1B DNA MER1_type -4 333 1 2199 43 54 0 chr1 4125548 4125827 -238538526 - AluY SINE Alu -17 294 1 1633 115 4 8 chr1 4126398 4126642 -238537711 + AluSq SINE Alu 1 243 -70 241 200 40 0 chr1 4126644 4126694 -238537659 + L2 LINE L2 2984 3035 -278 1695 157 23 7 chr1 4126694 4126999 -238537354 - AluJo SINE Alu -2 310 1 864 173 19 12 chr1 4127017 4127179 -238537174 - FRAM SINE Alu -13 163 1 639 246 68 85 chr1 4127179 4127242 -238537111 + L2 LINE L2 3020 3083 -230 1797 161 0 3 chr1 4127242 4127541 -238536812 + AluJo SINE Alu 1 298 -14 639 246 68 85 chr1 4127541 4127770 -238536583 + L2 LINE L2 3083 3307 -6 486 183 74 147 chr1 4127918 4128252 -238536101 + LTR37B LTR ERV1 118 459 -9 2139 84 7 0 chr1 4128261 4128547 -238535806 + AluSg SINE Alu 1 288 -22 1100 238 52 58 chr1 4128673 4129073 -238535280 + L2 LINE L2 2192 2589 -725 801 142 6 119 chr1 4129082 4129258 -238535095 + MER58A DNA MER1_type 47 202 -22 1676 176 97 54 chr1 4129267 4129380 -238534973 + MLT1D LTR MaLR 1 108 -397 1749 156 0 0 chr1 4129380 4129655 -238534698 + AluSx SINE Alu 1 275 -37 1676 176 97 54 chr1 4129655 4130024 -238534329 + MLT1D LTR MaLR 108 504 -1 961 246 120 32 chr1 4130024 4130417 -238533936 + L2 LINE L2 2578 2935 -378 2315 90 3 3 chr1 4130417 4130729 -238533624 + AluSx SINE Alu 1 312 0 961 246 120 32 chr1 4130729 4130949 -238533404 + L2 LINE L2 2935 3313 0 349 291 98 67 chr1 4130990 4131207 -238533146 - L1MC4a LINE L1 -1754 6054 5826 1641 128 26 49 chr1 4131207 4131511 -238532842 - AluSx SINE Alu -15 297 1 349 291 98 67 chr1 4131511 4131547 -238532806 - L1MC4a LINE L1 -1982 5826 5793 2030 104 0 35 chr1 4132156 4132474 -238531879 + AluSc SINE Alu 2 308 -1 1877 149 3 3 chr1 4132958 4133260 -238531093 - AluSx SINE Alu -10 302 1 440 110 41 0 chr1 4133501 4133574 -238530779 + L1MD1 LINE L1 6153 6228 -14 2055 111 3 3 chr1 4133720 4134017 -238530336 - AluSg SINE Alu -13 297 1 262 226 0 0 chr1 4134488 4134541 -238529812 - Charlie1b DNA MER1_type 0 523 471 2094 83 4 0 chr1 4134549 4134825 -238529528 + AluSg SINE Alu 1 277 -33 1044 168 96 0 chr1 4134827 4135035 -238529318 + AluJb SINE Alu 81 308 -4 1067 188 84 81 chr1 4135035 4135300 -238529053 - Charlie1b DNA MER1_type -2410 351 83 1686 168 7 0 chr1 4135300 4135585 -238528768 + AluJo SINE Alu 1 287 -25 1067 188 84 81 chr1 4135585 4135664 -238528689 - Charlie1b DNA MER1_type -2678 83 6 2190 93 3 0 chr1 4135879 4136170 -238528183 + AluSp SINE Alu 1 292 -21 1925 144 0 3 chr1 4136289 4136587 -238527766 - AluSq SINE Alu -16 297 1 995 261 24 31 chr1 4136706 4137046 -238527307 - L1MC4a LINE L1 -315 5806 5480 22 35 0 0 chr1 4137930 4137959 -238526394 + GC_rich Low_complexity Low_complexity 1 29 0 273 57 0 0 chr1 4141255 4141290 -238523063 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 254 235 0 0 chr1 4142775 4142826 -238521527 - L2 LINE L2 -2 3270 3220 2057 105 3 59 chr1 4142901 4143225 -238521128 - AluSx SINE Alu -6 306 1 306 0 0 0 chr1 4143472 4143506 -238520847 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr1 4144209 4144232 -238520121 + AT_rich Low_complexity Low_complexity 1 23 0 1931 109 48 14 chr1 4145060 4145354 -238518999 - AluSx SINE Alu -8 304 1 207 125 0 0 chr1 4147977 4148017 -238516336 + (T)n Simple_repeat Simple_repeat 1 40 0 1564 181 0 26 chr1 4148277 4148587 -238515766 - AluJo SINE Alu -10 302 1 1802 136 26 13 chr1 4149222 4149524 -238514829 - AluJb SINE Alu 0 312 7 1680 167 39 0 chr1 4150172 4150453 -238513900 - AluJb SINE Alu -20 292 1 2217 108 0 22 chr1 4150461 4150776 -238513577 - AluSx SINE Alu -1 311 4 33 43 0 0 chr1 4151009 4151056 -238513297 + AT_rich Low_complexity Low_complexity 1 47 0 2052 117 31 0 chr1 4151089 4151380 -238512973 - AluSq SINE Alu -13 300 1 955 133 106 0 chr1 4151526 4151677 -238512676 - AluY SINE Alu -12 299 133 2655 33 0 0 chr1 4151677 4151980 -238512373 - AluYb8 SINE Alu -7 311 9 27 62 0 0 chr1 4152130 4152178 -238512175 + AT_rich Low_complexity Low_complexity 1 48 0 1603 166 32 11 chr1 4152178 4152461 -238511892 - AluJo SINE Alu -23 289 1 221 286 0 32 chr1 4152710 4152773 -238511580 + L3 LINE CR1 1496 1556 -21 1017 132 86 17 chr1 4152793 4152967 -238511386 - MER44D DNA MER2_type -153 456 1 1941 143 0 16 chr1 4153215 4153522 -238510831 + AluJo SINE Alu 1 302 -10 615 159 62 0 chr1 4154661 4154774 -238509579 + L1MB3 LINE L1 6064 6183 0 1813 146 0 45 chr1 4155833 4156141 -238508212 - AluJb SINE Alu -18 294 1 1571 175 0 92 chr1 4156797 4156993 -238507360 - AluJo SINE Alu -5 307 153 1971 91 18 14 chr1 4156993 4157269 -238507084 + AluSq SINE Alu 1 277 -36 1571 175 0 92 chr1 4157269 4157410 -238506943 - AluJo SINE Alu -159 153 1 3403 199 15 71 chr1 4157432 4157830 -238506523 - L1ME1 LINE L1 -9 6157 5738 824 120 17 8 chr1 4157830 4157947 -238506406 - FLAM_C SINE Alu -15 118 1 3403 199 15 71 chr1 4157947 4158549 -238505804 - L1ME1 LINE L1 -428 5738 5224 3267 180 7 25 chr1 4158572 4158605 -238505748 - L1ME1 LINE L1 -922 5224 5192 1489 199 7 20 chr1 4158605 4158902 -238505451 - AluJb SINE Alu -19 293 1 3267 180 7 25 chr1 4158902 4159545 -238504808 - L1ME1 LINE L1 -954 5192 4560 21 36 0 0 chr1 4159922 4159950 -238504403 + AT_rich Low_complexity Low_complexity 1 28 0 300 202 394 0 chr1 4160034 4160133 -238504220 - L2 LINE L2 -1 3271 3134 2126 71 0 11 chr1 4160565 4160831 -238503522 + AluSc SINE Alu 35 297 -12 218 296 156 15 chr1 4161059 4161194 -238503159 - L2 LINE L2 -213 3059 2906 207 0 0 0 chr1 4161821 4161844 -238502509 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 220 242 208 17 chr1 4161962 4162082 -238502271 - L2 LINE L2 -804 2510 2368 2461 99 0 0 chr1 4162108 4162420 -238501933 - AluSq SINE Alu -1 312 1 315 184 19 48 chr1 4162546 4162649 -238501704 - LTR33 LTR ERVL -403 118 19 202 340 98 12 chr1 4162740 4162984 -238501369 - L2 LINE L2 -1138 2176 1912 1412 246 128 33 chr1 4163136 4163618 -238500735 - MLT1E LTR MaLR 0 593 53 2373 66 7 0 chr1 4163618 4163907 -238500446 + AluY SINE Alu 1 291 -20 1412 246 128 33 chr1 4163907 4163965 -238500388 - MLT1E LTR MaLR -540 53 2 198 245 38 0 chr1 4164281 4164334 -238500019 + MIR SINE MIR 158 212 -50 203 301 119 42 chr1 4165349 4165492 -238498861 + MIR SINE MIR 59 212 -50 212 152 76 0 chr1 4166430 4166496 -238497857 + (TTAA)n Simple_repeat Simple_repeat 3 73 0 1044 121 0 36 chr1 4166706 4166872 -238497481 - FRAM SINE Alu -9 167 8 216 326 22 33 chr1 4167078 4167170 -238497183 - L2 LINE L2 0 3313 3223 646 272 163 20 chr1 4167363 4167712 -238496641 + MLT1J2 LTR MaLR 1 399 -51 1893 165 3 0 chr1 4168300 4168597 -238495756 - AluJo SINE Alu -14 298 1 424 224 51 0 chr1 4168837 4168935 -238495418 + MER5A DNA MER1_type 4 106 -83 190 318 101 47 chr1 4169009 4169073 -238495280 - MIR3 SINE MIR -63 145 86 802 184 133 6 chr1 4169073 4169231 -238495122 - MER5B DNA MER1_type 0 178 1 190 318 101 47 chr1 4169231 4169295 -238495058 - MIR3 SINE MIR -122 86 10 561 247 93 16 chr1 4169351 4169545 -238494808 + L2 LINE L2 3104 3312 -1 953 209 6 0 chr1 4170732 4170890 -238493463 - FRAM SINE Alu -7 159 1 2244 120 0 0 chr1 4171151 4171460 -238492893 + AluSx SINE Alu 4 312 0 276 209 189 3 chr1 4171612 4171714 -238492639 - MIR SINE MIR -21 187 62 25 0 0 0 chr1 4171719 4171744 -238492609 + AT_rich Low_complexity Low_complexity 1 25 0 1733 177 0 7 chr1 4171744 4172026 -238492327 - AluJb SINE Alu -24 288 9 877 190 0 39 chr1 4172031 4172210 -238492143 - FRAM SINE Alu -3 173 2 1712 213 79 14 chr1 4172804 4173236 -238491117 - L1MC4 LINE L1 -149 7893 7434 303 195 149 15 chr1 4173418 4173507 -238490846 + MIR SINE MIR 34 118 -90 541 239 114 22 chr1 4173698 4173882 -238490471 + MIR SINE MIR 52 252 -10 405 39 0 0 chr1 4175888 4175939 -238488414 + (CA)n Simple_repeat Simple_repeat 1 51 0 408 262 112 15 chr1 4177015 4177164 -238487189 - MIR3 SINE MIR -27 181 11 242 201 69 90 chr1 4179990 4180134 -238484219 - Charlie7 DNA MER1_type -43 2569 2429 2490 82 0 0 chr1 4181380 4181683 -238482670 - AluSc SINE Alu -6 303 1 200 336 119 0 chr1 4181688 4181822 -238482531 - MIR SINE MIR -8 254 105 2094 128 0 19 chr1 4181984 4182296 -238482057 - AluSx SINE Alu -6 306 1 637 302 36 18 chr1 4182633 4182858 -238481495 - MIR SINE MIR -6 256 28 2386 75 0 25 chr1 4183118 4183437 -238480916 - AluY SINE Alu 0 311 1 2325 91 3 0 chr1 4183440 4183736 -238480617 - AluSx SINE Alu -15 297 1 575 183 15 44 chr1 4183744 4183881 -238480472 - L1ME1 LINE L1 -5 6161 6029 2450 87 0 0 chr1 4183900 4184211 -238480142 - AluY SINE Alu 0 311 1 23 0 0 0 chr1 4185122 4185145 -238479208 + AT_rich Low_complexity Low_complexity 1 23 0 1754 169 30 7 chr1 4185173 4185468 -238478885 - AluJb SINE Alu -8 304 3 207 0 0 0 chr1 4186113 4186136 -238478217 + (CAG)n Simple_repeat Simple_repeat 1 23 0 285 268 49 12 chr1 4186350 4186432 -238477921 + L2 LINE L2 3228 3312 -1 294 292 73 0 chr1 4187014 4187110 -238477243 + MIR SINE MIR 20 122 -86 23 33 0 0 chr1 4187235 4187265 -238477088 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr1 4187314 4187340 -238477013 + AT_rich Low_complexity Low_complexity 1 26 0 185 95 0 48 chr1 4187340 4187382 -238476971 + (TTTTTA)n Simple_repeat Simple_repeat 1 40 0 1744 154 10 20 chr1 4187731 4188024 -238476329 - AluJo SINE Alu -14 298 9 510 138 0 12 chr1 4188035 4188115 -238476238 - L1MB7 LINE L1 -66 6118 6040 867 146 7 0 chr1 4188566 4188710 -238475643 - MER5A DNA MER1_type -1 188 44 273 210 0 0 chr1 4189132 4189194 -238475159 + (CCTA)n Simple_repeat Simple_repeat 2 63 0 273 196 0 0 chr1 4189667 4189723 -238474630 + (TG)n Simple_repeat Simple_repeat 1 56 0 2184 64 13 60 chr1 4190034 4190348 -238474005 - AluY SINE Alu -11 300 2 21 0 0 0 chr1 4190778 4190799 -238473554 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr1 4190861 4190896 -238473457 + AT_rich Low_complexity Low_complexity 1 35 0 288 264 0 66 chr1 4191004 4191110 -238473243 + L2 LINE L2 3127 3225 -88 1286 164 56 0 chr1 4191867 4192135 -238472218 - AluJo SINE Alu -29 283 1 2305 95 10 3 chr1 4192179 4192485 -238471868 + AluSg SINE Alu 1 308 -2 1335 255 182 29 chr1 4192518 4192996 -238471357 - L2 LINE L2 0 3313 2910 2316 82 7 0 chr1 4192996 4193287 -238471066 + AluSq SINE Alu 1 293 -20 1335 255 182 29 chr1 4193287 4193945 -238470408 - L2 LINE L2 -403 2910 1991 1918 210 30 48 chr1 4193962 4194461 -238469892 - MLT1D LTR MaLR -15 490 1 441 338 69 9 chr1 4194471 4194702 -238469651 - L2 LINE L2 -1343 1971 1727 620 244 29 17 chr1 4195464 4195636 -238468717 + MER5B DNA MER1_type 3 176 -2 2289 104 0 13 chr1 4195716 4196032 -238468321 + AluSx SINE Alu 1 312 0 185 298 60 36 chr1 4196350 4196434 -238467919 - L3 LINE CR1 -28 1549 1464 1494 121 0 0 chr1 4196658 4196857 -238467496 - AluSx SINE Alu -113 199 1 937 239 99 16 chr1 4196919 4197457 -238466896 + L1ME3A LINE L1 5437 6165 -2 1678 157 3 59 chr1 4197468 4197792 -238466561 + AluJb SINE Alu 1 306 -6 272 242 0 55 chr1 4197803 4197894 -238466459 + L1ME LINE L1 5779 5864 -306 2085 265 91 12 chr1 4197978 4198540 -238465813 - MLT2E LTR ERVL -2 626 21 596 130 100 0 chr1 4198552 4198652 -238465701 + L1MB7 LINE L1 6069 6178 -6 2243 127 38 0 chr1 4198904 4199243 -238465110 - THE1B LTR MaLR 0 364 13 1565 136 0 8 chr1 4199344 4199580 -238464773 + AluSg/x SINE Alu 65 298 -14 1912 206 24 12 chr1 4199603 4200026 -238464327 + L1MB8 LINE L1 5751 6178 0 285 268 0 0 chr1 4200859 4200997 -238463356 + (CA)n Simple_repeat Simple_repeat 2 139 0 228 67 0 0 chr1 4203385 4203415 -238460938 + (T)n Simple_repeat Simple_repeat 1 30 0 2196 62 72 10 chr1 4203799 4204090 -238460263 + AluSg SINE Alu 1 309 -1 517 339 190 10 chr1 4206041 4206792 -238457561 + L2 LINE L2 2406 3270 -43 180 179 60 60 chr1 4207944 4208028 -238456325 - L2 LINE L2 -294 2978 2895 2438 89 0 0 chr1 4209072 4209376 -238454977 + AluY SINE Alu 1 304 -7 369 109 0 0 chr1 4210338 4210393 -238453960 + (CA)n Simple_repeat Simple_repeat 2 56 0 2713 253 71 66 chr1 4211305 4212653 -238451700 + L1ME1 LINE L1 4200 5550 -616 2072 120 17 10 chr1 4212653 4212931 -238451422 + AluSx SINE Alu 2 284 -28 306 0 0 0 chr1 4212931 4212965 -238451388 + (CA)n Simple_repeat Simple_repeat 1 34 0 2072 120 17 10 chr1 4212965 4212987 -238451366 + AluSx SINE Alu 284 304 -8 2713 253 71 66 chr1 4212987 4213568 -238450785 + L1ME1 LINE L1 5550 6127 -39 2602 213 129 14 chr1 4213558 4214301 -238450052 + L1ME2 LINE L1 5335 6163 -1 * 217 350 63 14 chr1 4214780 4214923 -238449430 + L2 LINE L2 2154 2303 -1011 310 307 161 37 chr1 4214995 4215425 -238448928 + L2 LINE L2 1796 2278 -1036 1753 133 3 117 chr1 4215432 4215784 -238448569 - AluJo SINE Alu 0 312 1 2315 121 0 3 chr1 4216073 4216386 -238447967 - AluSq SINE Alu -1 312 1 202 186 0 34 chr1 4222858 4222917 -238441436 + CT-rich Low_complexity Low_complexity 3 59 0 224 269 76 48 chr1 4224433 4224482 -238439871 + MIR3 SINE MIR 35 81 -127 2572 98 0 14 chr1 4224482 4224851 -238439502 - THE1B LTR MaLR 0 364 1 224 269 76 48 chr1 4224851 4224966 -238439387 + MIR3 SINE MIR 81 208 0 39 22 0 0 chr1 4226676 4226722 -238437631 + AT_rich Low_complexity Low_complexity 1 46 0 2291 104 0 0 chr1 4226735 4227024 -238437329 - AluSx SINE Alu -23 289 1 3189 105 2 25 chr1 4227024 4227538 -238436815 - L1MA2 LINE L1 -25 6279 5776 390 348 12 6 chr1 4227571 4227732 -238436621 + MIR SINE MIR 53 214 -48 2229 97 0 32 chr1 4227736 4228044 -238436309 + AluSc SINE Alu 1 298 -11 2744 82 0 0 chr1 4228254 4228618 -238435735 - THE1B LTR MaLR 0 364 1 1614 226 18 28 chr1 4229352 4229746 -238434607 + L1MB8 LINE L1 5784 6173 -5 181 330 17 51 chr1 4230185 4230303 -238434050 + MIR SINE MIR 34 147 -115 2845 186 3 42 chr1 4231697 4232224 -238432129 + L1MB1 LINE L1 5602 6105 -63 2309 131 0 0 chr1 4232224 4232537 -238431816 + AluSq SINE Alu 1 313 0 2845 186 3 42 chr1 4232537 4232599 -238431754 + L1MB1 LINE L1 6105 6168 0 204 299 51 34 chr1 4232789 4232906 -238431447 + L2 LINE L2 3150 3268 -4 25 65 0 0 chr1 4235205 4235251 -238429102 + AT_rich Low_complexity Low_complexity 1 46 0 583 266 57 11 chr1 4235254 4235431 -238428922 + L1MD2 LINE L1 5948 6132 -227 263 291 74 20 chr1 4235441 4235589 -238428764 + L1MD1 LINE L1 6079 6234 -8 191 167 241 0 chr1 4235731 4235785 -238428568 - MIR SINE MIR -89 173 107 359 250 205 0 chr1 4236796 4236908 -238427445 + L2 LINE L2 3179 3313 0 2306 119 3 0 chr1 4238114 4238416 -238425937 - AluSx SINE Alu -9 303 1 2097 127 10 0 chr1 4239549 4239849 -238424504 - AluSq SINE Alu -10 303 1 208 342 43 17 chr1 4242069 4242186 -238422167 - L2 LINE L2 -10 3262 3143 476 309 62 65 chr1 4242225 4242643 -238421710 - L2 LINE L2 -1 3271 2855 413 305 224 25 chr1 4242836 4243197 -238421156 - L2 LINE L2 -652 2662 2230 2274 108 28 19 chr1 4245060 4245421 -238418932 - THE1B LTR MaLR 0 364 1 10784 103 9 15 chr1 4245421 4247010 -238417343 - THE1B-int LTR MaLR 0 1580 1 2301 107 19 25 chr1 4247010 4247376 -238416977 - THE1B LTR MaLR 0 364 1 204 235 73 0 chr1 4247665 4247733 -238416620 - MIR SINE MIR -117 145 73 865 261 154 30 chr1 4247743 4248244 -238416109 - MLT1F1 LTR MaLR 0 567 5 505 290 14 0 chr1 4249558 4249696 -238414657 - L2 LINE L2 -1 3312 3173 214 319 139 28 chr1 4251458 4251602 -238412751 + MIR SINE MIR 67 226 -36 997 177 19 18 chr1 4251735 4252157 -238412196 + CT-rich Low_complexity Low_complexity 1 600 0 1825 175 0 28 chr1 4252164 4252484 -238411869 - AluJo SINE Alu -1 311 1 26 0 0 0 chr1 4252490 4252516 -238411837 + AT_rich Low_complexity Low_complexity 1 26 0 1379 176 59 0 chr1 4252516 4252637 -238411716 - AluJo SINE Alu -59 253 141 186 43 0 0 chr1 4252637 4252660 -238411693 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 1379 176 59 0 chr1 4252660 4252777 -238411576 - AluJo SINE Alu -171 141 1 2474 211 54 6 chr1 4252777 4253294 -238411059 - MER119 DNA MER1_type -40 543 2 314 315 56 15 chr1 4254057 4254254 -238410099 + L2 LINE L2 2863 3067 -246 248 240 0 125 chr1 4254296 4254400 -238409953 + L2 LINE L2 3195 3285 -28 24 0 0 0 chr1 4254445 4254469 -238409884 + AT_rich Low_complexity Low_complexity 1 24 0 2203 120 0 22 chr1 4254609 4254790 -238409563 - AluSg SINE Alu 0 310 127 213 65 0 0 chr1 4254790 4254821 -238409532 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2326 60 3 3 chr1 4254821 4255104 -238409249 - AluY SINE Alu -28 283 1 2203 120 0 22 chr1 4255104 4255238 -238409115 - AluSg SINE Alu -181 129 1 180 97 0 0 chr1 4255533 4255564 -238408789 + L2 LINE L2 2929 2959 -313 279 329 0 0 chr1 4257033 4257118 -238407235 - MIR SINE MIR -86 176 92 589 164 136 21 chr1 4257456 4257471 -238406882 - L1MA10 LINE L1 -1 6333 6319 1198 213 79 30 chr1 4257471 4257799 -238406554 - L1ME1 LINE L1 -5 6161 5818 621 215 7 56 chr1 4258131 4258275 -238406078 - MER31B LTR ERV1 -329 137 1 1563 138 0 4 chr1 4258458 4258697 -238405656 - AluSx SINE Alu -14 298 61 180 224 90 15 chr1 4258912 4258979 -238405374 - L2 LINE L2 -453 2861 2790 1816 145 24 27 chr1 4258991 4259160 -238405193 - AluSx SINE Alu -12 300 131 2125 106 3 33 chr1 4259160 4259463 -238404890 - AluSg SINE Alu -16 294 1 1816 145 24 27 chr1 4259463 4259589 -238404764 - AluSx SINE Alu -181 131 6 1185 210 80 25 chr1 4259615 4259901 -238404452 - AluJo SINE Alu 0 302 1 272 242 114 40 chr1 4260129 4260278 -238404075 - MER34 LTR ERV1 -15 527 368 243 235 0 0 chr1 4260538 4260589 -238403764 - MER34 LTR ERV1 -467 75 25 2283 122 0 0 chr1 4261205 4261509 -238402844 + AluSx SINE Alu 1 304 -8 243 253 116 11 chr1 4261515 4261610 -238402743 + L1 LINE L1 4954 5058 -1088 298 313 62 24 chr1 4262793 4263001 -238401352 + L1MEc LINE L1 1309 1524 -5039 970 148 0 0 chr1 4263049 4263184 -238401169 + AluSq/x SINE Alu 1 135 -177 2051 144 7 0 chr1 4263184 4263482 -238400871 + AluSx SINE Alu 1 300 -12 295 285 87 48 chr1 4263482 4263689 -238400664 + L1MEc LINE L1 1475 1689 -4695 2381 237 98 40 chr1 4263735 4264503 -238399850 - MER21B LTR ERV1 -51 812 1 1040 275 98 38 chr1 4264668 4265519 -238398834 + L1MEc LINE L1 2042 2886 -3496 621 199 66 29 chr1 4265552 4265688 -238398665 + Tigger3(Golem) DNA MER2_type 3 143 -2886 * 1140 174 36 101 chr1 4265684 4265960 -238398393 + Tigger3(Golem) DNA MER2_type 2781 3038 0 428 258 97 0 chr1 4266011 4266135 -238398218 + L1MEc LINE L1 2887 3022 -3360 1338 255 70 22 chr1 4266151 4266653 -238397700 + L1MEc LINE L1 4063 4588 -1794 1582 245 21 89 chr1 4266674 4266704 -238397649 - LTR41 LTR ERVL -7 766 736 2705 128 16 16 chr1 4266704 4267132 -238397221 - MSTA LTR MaLR 0 428 1 1582 245 21 89 chr1 4267132 4267660 -238396693 - LTR41 LTR ERVL -37 736 246 197 439 46 0 chr1 4267811 4267941 -238396412 - L2 LINE L2 -3 3269 3134 193 208 57 19 chr1 4267938 4267991 -238396362 - L2 LINE L2 -18 3254 3200 * 255 164 0 49 chr1 4267991 4268052 -238396301 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 415 336 79 19 chr1 4268283 4268815 -238395538 - L2 LINE L2 -339 2975 2412 294 263 113 8 chr1 4269121 4269254 -238395099 - L2 LINE L2 0 3313 3167 548 190 58 16 chr1 4269378 4269499 -238394854 + L2 LINE L2 3188 3313 0 270 0 0 0 chr1 4269893 4269923 -238394430 + (TGG)n Simple_repeat Simple_repeat 3 32 0 1812 165 7 3 chr1 4270958 4271261 -238393092 + AluJo SINE Alu 1 304 -8 398 284 76 42 chr1 4271271 4271535 -238392818 - L1MC/D LINE L1 -2252 5556 5284 2233 125 0 6 chr1 4272078 4272390 -238391963 + AluSx SINE Alu 1 310 -2 2060 120 31 0 chr1 4272415 4272706 -238391647 - AluSx SINE Alu -12 300 1 2364 146 90 19 chr1 4273160 4273409 -238390944 - L1MB3 LINE L1 -2 6181 5951 2257 102 0 32 chr1 4273409 4273723 -238390630 - AluSx SINE Alu -8 304 1 2364 146 90 19 chr1 4273723 4273939 -238390414 - L1MB3 LINE L1 -232 5951 5683 1461 154 63 75 chr1 4274459 4274791 -238389562 - L1MA9 LINE L1 -5 6307 5980 266 330 134 8 chr1 4274801 4275062 -238389291 + L2 LINE L2 2154 2447 -867 2776 172 60 14 chr1 4275075 4275646 -238388707 - L1MC3 LINE L1 -2 7783 7187 509 320 93 29 chr1 4275666 4276109 -238388244 + L2 LINE L2 2497 2967 -347 214 250 40 13 chr1 4276334 4276410 -238387943 + L2 LINE L2 3235 3312 -1 812 143 0 8 chr1 4276437 4276556 -238387797 - FLAM_C SINE Alu -25 118 1 520 310 16 22 chr1 4277113 4277297 -238387056 - MIR SINE MIR -33 229 47 223 335 37 69 chr1 4277599 4277787 -238386566 + MER5A DNA MER1_type 8 189 0 445 231 89 13 chr1 4278503 4278675 -238385678 - L1MA10 LINE L1 -2 6332 5986 26 30 0 0 chr1 4279190 4279223 -238385130 + AT_rich Low_complexity Low_complexity 1 33 0 1634 147 16 60 chr1 4279247 4279561 -238384792 - AluJo SINE Alu -12 300 1 506 123 0 0 chr1 4279681 4279754 -238384599 + AluSg/x SINE Alu 201 273 -36 306 0 0 0 chr1 4279771 4279805 -238384548 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 32 0 0 chr1 4283292 4283323 -238381030 + AT_rich Low_complexity Low_complexity 1 31 0 303 28 0 0 chr1 4283668 4283704 -238380649 + (CCA)n Simple_repeat Simple_repeat 3 38 0 22 0 0 0 chr1 4284693 4284715 -238379638 + AT_rich Low_complexity Low_complexity 1 22 0 779 231 32 19 chr1 4285316 4285532 -238378821 + MIR SINE MIR 16 234 -28 371 266 63 19 chr1 4286049 4286207 -238378146 - MIR SINE MIR -51 211 47 2060 99 34 14 chr1 4286340 4286634 -238377719 - AluSg SINE Alu -10 300 1 196 214 0 54 chr1 4286761 4286817 -238377536 + MER5B DNA MER1_type 1 53 -125 272 263 0 42 chr1 4287195 4287290 -238377063 + T-rich Low_complexity Low_complexity 3 93 0 2145 121 0 3 chr1 4287415 4287712 -238376641 - AluSq SINE Alu -17 296 1 1670 135 37 80 chr1 4290648 4290974 -238373379 - AluJo SINE Alu 0 312 1 1214 192 77 27 chr1 4291123 4291420 -238372933 - AluJo SINE Alu 0 312 1 1973 157 7 3 chr1 4291430 4291735 -238372618 - AluJb SINE Alu -6 306 1 382 225 73 73 chr1 4291836 4291987 -238372366 - L2 LINE L2 0 3313 3163 790 239 113 13 chr1 4291990 4292228 -238372125 - MIR SINE MIR 0 262 1 1381 255 122 84 chr1 4292397 4292729 -238371624 - L2 LINE L2 -277 3036 2718 2008 134 0 3 chr1 4292729 4293041 -238371312 + AluSg SINE Alu 1 311 0 1381 255 122 84 chr1 4293041 4293077 -238371276 - L2 LINE L2 -595 2718 2685 1387 218 65 12 chr1 4293077 4293398 -238370955 + MER58B DNA MER1_type 4 341 0 1381 255 122 84 chr1 4293398 4294003 -238370350 - L2 LINE L2 -628 2685 1999 1600 142 13 0 chr1 4294003 4294235 -238370118 - AluSx SINE Alu -75 237 3 1381 255 122 84 chr1 4294235 4294431 -238369922 - L2 LINE L2 -1314 1999 1812 613 238 145 26 chr1 4294494 4294805 -238369548 - L2 LINE L2 -2165 1149 802 687 209 150 38 chr1 4294810 4295097 -238369256 - MER33 DNA MER1_type -4 320 2 405 0 0 0 chr1 4295335 4295380 -238368973 + (CA)n Simple_repeat Simple_repeat 2 46 0 448 193 101 0 chr1 4299127 4299246 -238365107 + L2 LINE L2 3180 3310 -3 207 100 0 0 chr1 4299850 4299880 -238364473 + (T)n Simple_repeat Simple_repeat 1 30 0 1619 185 7 23 chr1 4301606 4301914 -238362439 - AluJo SINE Alu -9 303 1 223 294 24 32 chr1 4303104 4303230 -238361123 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 211 293 0 0 chr1 4304057 4304115 -238360238 + G-rich Low_complexity Low_complexity 1 58 0 311 250 10 31 chr1 4305180 4305276 -238359077 + LTR67 LTR ERVL 459 552 -5 811 211 29 29 chr1 4305430 4305634 -238358719 + MIR SINE MIR 39 242 -20 438 322 49 83 chr1 4305689 4305953 -238358400 - L2 LINE L2 -18 3254 3000 587 267 78 0 chr1 4306339 4306542 -238357811 + MIR SINE MIR 25 250 -12 2119 194 25 75 chr1 4308628 4309159 -238355194 + MLT1D LTR MaLR 1 504 -1 188 220 80 0 chr1 4311800 4311850 -238352503 + MIR SINE MIR 81 134 -128 198 0 0 0 chr1 4312305 4312327 -238352026 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 704 287 77 28 chr1 4313311 4313597 -238350756 + L1ME4a LINE L1 5794 6093 -28 2111 107 0 3 chr1 4313598 4313898 -238350455 - AluSx SINE Alu -2 310 12 26 30 0 0 chr1 4313940 4313973 -238350380 + AT_rich Low_complexity Low_complexity 1 33 0 2478 64 0 3 chr1 4313999 4314311 -238350042 - AluY SINE Alu 0 311 1 233 325 0 38 chr1 4314883 4314963 -238349390 - MIR SINE MIR -70 192 116 571 295 52 10 chr1 4314981 4315174 -238349179 - MIR SINE MIR -13 249 49 303 216 144 31 chr1 4315901 4315998 -238348355 + MLT1I LTR MaLR 294 401 -8 256 359 54 12 chr1 4316430 4316597 -238347756 + MIR SINE MIR 24 197 -65 223 319 121 14 chr1 4316600 4316741 -238347612 + MIR3 SINE MIR 17 172 -36 * 290 342 17 25 chr1 4316733 4316853 -238347500 - MIR SINE MIR -68 140 22 392 316 16 1 chr1 4317619 4317764 -238346589 + MIR SINE MIR 9 153 -62 327 254 16 56 chr1 4317889 4318015 -238346338 + MIR SINE MIR 94 214 -48 358 216 0 0 chr1 4318283 4318357 -238345996 + MIR SINE MIR 89 162 -100 4263 196 67 38 chr1 4318390 4318778 -238345575 + L1MB8 LINE L1 4105 4480 -1698 1896 112 10 26 chr1 4318778 4319082 -238345271 + AluSx SINE Alu 1 299 -13 4263 196 67 38 chr1 4319082 4319978 -238344375 + L1MB8 LINE L1 4480 5348 -830 1516 176 27 23 chr1 4319978 4320279 -238344074 + AluJo SINE Alu 11 312 0 4263 196 67 38 chr1 4320279 4320814 -238343539 + L1MB8 LINE L1 5348 5992 -186 1851 135 35 0 chr1 4320814 4321102 -238343251 + AluJb SINE Alu 1 298 -14 4263 196 67 38 chr1 4321102 4321295 -238343058 + L1MB8 LINE L1 5992 6178 0 439 229 97 21 chr1 4321297 4321441 -238342912 - L2 LINE L2 0 3313 3159 810 205 36 6 chr1 4321448 4321614 -238342739 - Tigger5 DNA MER2_type 0 2323 2153 653 155 17 9 chr1 4321606 4321722 -238342631 - Tigger5 DNA MER2_type -2206 117 1 * 429 253 136 86 chr1 4321722 4322130 -238342223 - L2 LINE L2 -160 3153 2708 2548 166 52 14 chr1 4322130 4322582 -238341771 + L1MB3 LINE L1 5682 6155 -28 2390 77 3 3 chr1 4322582 4322892 -238341461 - AluSg SINE Alu 0 310 1 2548 166 52 14 chr1 4322892 4322921 -238341432 + L1MB3 LINE L1 6155 6181 -2 429 253 136 86 chr1 4322921 4323011 -238341342 - L2 LINE L2 -605 2708 2624 204 254 0 0 chr1 4323234 4323293 -238341060 + GA-rich Low_complexity Low_complexity 4 62 0 1825 126 23 23 chr1 4323770 4324071 -238340282 - AluJo SINE Alu 0 312 12 30 45 0 0 chr1 4324191 4324235 -238340118 + AT_rich Low_complexity Low_complexity 1 44 0 186 133 0 0 chr1 4324370 4324400 -238339953 + (A)n Simple_repeat Simple_repeat 1 30 0 357 253 22 11 chr1 4324893 4324984 -238339369 + LTR16C LTR ERVL 388 479 -12 198 293 37 0 chr1 4325301 4325383 -238338970 + MIR3 SINE MIR 4 88 -120 2038 218 118 4 chr1 4325874 4326341 -238338012 + MLT2B1 LTR ERVL 1 520 0 238 103 0 0 chr1 4326456 4326495 -238337858 - L2 LINE L2 -93 3179 3141 405 276 55 0 chr1 4326508 4326635 -238337718 - L2 LINE L2 0 3313 3180 195 294 44 0 chr1 4327408 4327476 -238336877 + L2 LINE L2 3234 3304 -9 196 325 158 0 chr1 4328416 4328530 -238335823 + MIR SINE MIR 118 249 -13 983 101 0 57 chr1 4328539 4329034 -238335319 + (ATGGTG)n Simple_repeat Simple_repeat 1 647 0 740 86 27 54 chr1 4329045 4329270 -238335083 + (ATGGTG)n Simple_repeat Simple_repeat 1 218 0 736 113 16 48 chr1 4329281 4329467 -238334886 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 2356 74 0 0 chr1 4329493 4329789 -238334564 - AluY SINE Alu -11 300 5 244 313 111 14 chr1 4330543 4330687 -238333666 + MIR3 SINE MIR 33 190 -18 205 119 48 0 chr1 4331799 4331841 -238332512 + G-rich Low_complexity Low_complexity 4 47 0 2737 188 52 72 chr1 4332463 4332941 -238331412 + L1ME LINE L1 4589 5075 -1091 1885 129 56 0 chr1 4332941 4333227 -238331126 + AluSx SINE Alu 1 302 -10 2737 188 52 72 chr1 4333227 4333277 -238331076 + L1ME LINE L1 5075 5124 -1042 775 196 144 7 chr1 4333277 4333430 -238330923 + FAM SINE Alu 1 174 -1 2737 188 52 72 chr1 4333430 4334043 -238330310 + L1ME LINE L1 5124 5713 -453 222 37 0 0 chr1 4384788 4384815 -238279538 + (CA)n Simple_repeat Simple_repeat 1 27 0 1033 338 43 20 chr1 4385394 4386099 -238278254 + L1MEc LINE L1 344 1064 -5657 619 279 56 41 chr1 4386113 4386270 -238278083 + L1MEc LINE L1 1564 1717 -4823 2114 130 7 7 chr1 4386270 4386569 -238277784 - AluSx SINE Alu -12 300 2 619 279 56 41 chr1 4386569 4386752 -238277601 + L1MEc LINE L1 1717 1909 -4631 358 246 16 25 chr1 4386761 4386883 -238277470 + L1ME1 LINE L1 6040 6160 -6 249 242 0 29 chr1 4386959 4387027 -238277326 - MIR SINE MIR -64 144 78 1599 110 0 0 chr1 4387329 4387549 -238276804 - AluSg/x SINE Alu 0 303 84 313 250 16 80 chr1 4387559 4387747 -238276606 - LTR41 LTR ERVL -1 772 597 205 211 0 0 chr1 4388004 4388042 -238276311 + (TAA)n Simple_repeat Simple_repeat 2 39 0 516 213 0 43 chr1 4388095 4388236 -238276117 - LTR41 LTR ERVL -638 135 1 737 274 99 16 chr1 4388418 4388732 -238275621 - MER102b DNA MER1_type -1 340 1 1950 158 0 0 chr1 4388953 4389238 -238275115 + AluSx SINE Alu 1 285 -27 468 0 0 0 chr1 4389238 4389290 -238275063 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 354 330 99 42 chr1 4389468 4389823 -238274530 + L2 LINE L2 2897 3271 -1 21 0 0 0 chr1 4390455 4390476 -238273877 + AT_rich Low_complexity Low_complexity 1 21 0 240 185 0 0 chr1 4390946 4391000 -238273353 + (TA)n Simple_repeat Simple_repeat 2 55 0 576 201 112 99 chr1 4391535 4391784 -238272569 + MER33 DNA MER1_type 5 260 -2325 1090 81 0 7 chr1 4391784 4391932 -238272421 - L1PA8 LINE L1 -4 6168 6022 576 201 112 99 chr1 4391932 4391996 -238272357 + MER33 DNA MER1_type 260 322 -2 2193 211 65 0 chr1 4393224 4393717 -238270636 - L1MB5 LINE L1 0 6174 5650 291 280 144 8 chr1 4393798 4393916 -238270437 + MIR3 SINE MIR 26 159 -49 824 241 59 15 chr1 4394372 4394575 -238269778 + MIR SINE MIR 13 224 -38 214 244 0 0 chr1 4395292 4395333 -238269020 + L2 LINE L2 3227 3267 -5 417 302 82 21 chr1 4395989 4396162 -238268191 - MIR SINE MIR -78 130 3 513 0 0 0 chr1 4396330 4396387 -238267966 + (CATCC)n Simple_repeat Simple_repeat 4 60 0 345 298 76 105 chr1 4396394 4396736 -238267617 - L2 LINE L2 -3 3269 2938 478 303 14 66 chr1 4399443 4399809 -238264544 - MLT1I LTR MaLR 0 409 63 787 184 69 17 chr1 4399947 4400121 -238264232 - MER5A DNA MER1_type -6 183 1 347 301 46 85 chr1 4400546 4400741 -238263612 + MIR SINE MIR 9 190 -42 608 294 96 65 chr1 4401744 4402098 -238262255 + L2 LINE L2 2948 3312 -1 209 409 27 9 chr1 4402270 4402380 -238261973 - MIR SINE MIR -142 120 9 1792 157 56 14 chr1 4404470 4404826 -238259527 + L1MB3 LINE L1 5813 6183 0 288 200 0 0 chr1 4404897 4404957 -238259396 + (TG)n Simple_repeat Simple_repeat 1 60 0 2065 112 7 7 chr1 4405862 4406148 -238258205 - AluSx SINE Alu -26 286 1 753 218 99 36 chr1 4406156 4406408 -238257945 - HAL1 LINE L1 0 2507 2240 736 312 42 45 chr1 4406493 4407134 -238257219 - HAL1 LINE L1 -1800 707 69 258 358 0 16 chr1 4408441 4408564 -238255789 + (CA)n Simple_repeat Simple_repeat 2 122 0 * 349 302 22 33 chr1 4408521 4408703 -238255650 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 * 458 305 23 11 chr1 4408578 4408755 -238255598 + (CA)n Simple_repeat Simple_repeat 2 180 0 506 133 11 0 chr1 4408778 4408868 -238255485 + (CA)n Simple_repeat Simple_repeat 2 92 0 342 279 0 23 chr1 4409710 4409796 -238254557 - L2 LINE L2 -5 3267 3184 183 172 0 0 chr1 4410078 4410107 -238254246 - MIR SINE MIR -119 143 115 600 172 20 26 chr1 4410139 4410483 -238253870 + (CA)n Simple_repeat Simple_repeat 1 342 0 546 202 26 16 chr1 4410512 4411059 -238253294 + (CA)n Simple_repeat Simple_repeat 1 552 0 308 189 14 0 chr1 4411116 4411190 -238253163 + (CA)n Simple_repeat Simple_repeat 2 76 0 2030 134 14 3 chr1 4412458 4412749 -238251604 + AluJb SINE Alu 1 294 -18 299 264 14 14 chr1 4413037 4413185 -238251168 + GA-rich Low_complexity Low_complexity 1 148 0 493 211 18 18 chr1 4413232 4413341 -238251012 - MIR SINE MIR -55 153 45 266 258 72 62 chr1 4413876 4413973 -238250380 - L2 LINE L2 -6 3266 3169 372 94 0 0 chr1 4414047 4414100 -238250253 + (TG)n Simple_repeat Simple_repeat 1 53 0 634 232 24 0 chr1 4414794 4414958 -238249395 + MER20 DNA MER1_type 31 198 -21 559 232 153 23 chr1 4415000 4415177 -238249176 + MIR SINE MIR 32 231 -31 211 288 23 53 chr1 4415352 4415484 -238248869 - L2 LINE L2 -1242 2072 1945 1665 241 84 44 chr1 4415531 4416100 -238248253 - MLT1E LTR MaLR -1 592 1 280 305 11 12 chr1 4416156 4416269 -238248084 + MIR3 SINE MIR 40 156 -52 472 250 40 27 chr1 4416299 4416447 -238247906 - MER117 DNA MER1_type -47 150 1 1756 214 35 46 chr1 4417665 4418146 -238246207 - MLT1D LTR MaLR -22 483 8 255 244 73 146 chr1 4418253 4418401 -238245952 + MIR SINE MIR 18 148 -114 2299 120 0 0 chr1 4418401 4418710 -238245643 + AluY SINE Alu 1 309 -2 255 244 73 146 chr1 4418710 4418766 -238245587 + MIR SINE MIR 148 207 -55 333 250 139 9 chr1 4419224 4419332 -238245021 - MIR SINE MIR -109 153 32 1204 193 4 66 chr1 4421057 4421103 -238243250 - MLT2B1 LTR ERVL 0 520 473 204 40 0 0 chr1 4421103 4421128 -238243225 + (TG)n Simple_repeat Simple_repeat 2 26 0 1204 193 4 66 chr1 4421128 4421146 -238243207 - MLT2B1 LTR ERVL -47 473 455 1615 87 31 26 chr1 4421146 4421375 -238242978 + MER30 DNA MER1_type 1 230 0 1204 193 4 66 chr1 4421375 4421627 -238242726 - MLT2B1 LTR ERVL -65 455 267 595 231 8 0 chr1 4421595 4421872 -238242481 - MLT2B1 LTR ERVL -123 397 267 * 595 231 8 0 chr1 4421840 4422117 -238242236 - MLT2B1 LTR ERVL -123 397 267 595 231 8 0 chr1 4422085 4422215 -238242138 - MLT2B1 LTR ERVL -123 397 267 595 231 8 0 chr1 4422183 4422313 -238242040 - MLT2B1 LTR ERVL -123 397 267 * 1167 228 29 87 chr1 4422281 4422853 -238241500 - MLT2B1 LTR ERVL -112 442 1 2555 48 10 16 chr1 4423436 4423749 -238240604 - AluY SINE Alu 0 311 1 2335 82 7 7 chr1 4423775 4424068 -238240285 - AluSq SINE Alu -20 293 1 277 229 165 28 chr1 4424248 4424357 -238239996 + MER63 DNA MER1_type 6 755 -81 1258 152 13 45 chr1 4425088 4425312 -238239041 - AluJo SINE Alu -10 302 86 685 237 36 16 chr1 4426571 4426765 -238237588 - MER105 DNA DNA 0 204 7 648 217 84 7 chr1 4426783 4426926 -238237427 - MIR SINE MIR -72 190 37 1872 253 69 23 chr1 4426928 4427494 -238236859 - MLT1E LTR MaLR -1 592 1 271 323 122 0 chr1 4429613 4429842 -238234511 + L2 LINE L2 2553 2809 -505 939 220 59 84 chr1 4429898 4430289 -238234064 - MLT1B LTR MaLR -6 384 4 261 119 0 0 chr1 4432085 4432127 -238232226 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 422 302 82 62 chr1 4432138 4432542 -238231811 - L2 LINE L2 -25 3247 2836 1834 169 52 33 chr1 4432682 4433050 -238231303 - THE1C LTR MaLR 0 375 1 2462 80 3 0 chr1 4433566 4433866 -238230487 - AluY SINE Alu -10 301 1 207 0 0 0 chr1 4434045 4434068 -238230285 + (T)n Simple_repeat Simple_repeat 1 23 0 2368 180 32 31 chr1 4434636 4435159 -238229194 + MER68 LTR ERV1 38 561 -1 429 271 181 12 chr1 4435159 4435404 -238228949 - L2 LINE L2 -253 3060 2773 1248 112 12 0 chr1 4435457 4435618 -238228735 - AluSg/x SINE Alu -15 295 133 2228 128 10 0 chr1 4435629 4435935 -238228418 - AluSx SINE Alu -3 309 1 233 240 190 50 chr1 4435935 4436035 -238228318 - MIR SINE MIR -114 148 35 325 228 0 87 chr1 4436325 4436417 -238227936 + MIR SINE MIR 78 161 -101 2403 236 33 72 chr1 4436433 4436711 -238227642 - L1ME1 LINE L1 -4 6231 5944 324 0 0 0 chr1 4436717 4436753 -238227600 + (TG)n Simple_repeat Simple_repeat 1 36 0 2089 131 0 7 chr1 4436753 4437036 -238227317 - AluSx SINE Alu -29 283 1 2403 236 33 72 chr1 4437036 4437748 -238226605 - L1ME1 LINE L1 -291 5944 5206 2536 76 0 0 chr1 4437748 4438049 -238226304 - AluSc SINE Alu -8 301 1 2403 236 33 72 chr1 4438049 4438571 -238225782 - L1ME1 LINE L1 -1029 5206 4665 2092 91 18 0 chr1 4438571 4438845 -238225508 + AluSx SINE Alu 1 279 -33 285 29 0 0 chr1 4438846 4438880 -238225473 + (CA)n Simple_repeat Simple_repeat 2 35 0 2403 236 33 72 chr1 4438880 4439063 -238225290 - L1ME1 LINE L1 -1569 4666 4606 1391 142 0 10 chr1 4439091 4439288 -238225065 - AluJo SINE Alu -33 279 85 566 188 0 0 chr1 4439362 4439458 -238224895 + AluJ/FLAM SINE Alu 2 97 -215 533 261 8 0 chr1 4439464 4439594 -238224759 - L1MD3 LINE L1 -68 7927 7797 2014 266 58 9 chr1 4439597 4440344 -238224009 - L1ME1 LINE L1 -2185 4030 3248 432 222 98 39 chr1 4440340 4440493 -238223860 - L1ME1 LINE L1 -6216 180 19 * 365 250 34 11 chr1 4440538 4440626 -238223727 + L2 LINE L2 348 437 -2877 2780 129 13 22 chr1 4440703 4441081 -238223272 - L1PA16 LINE L1 -11 6155 5780 1769 158 46 23 chr1 4441081 4441266 -238223087 - AluJb SINE Alu -1 311 115 189 0 0 0 chr1 4441266 4441287 -238223066 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1769 158 46 23 chr1 4441287 4441405 -238222948 - AluJb SINE Alu -197 115 1 2780 129 13 22 chr1 4441405 4441475 -238222878 - L1PA16 LINE L1 -386 5780 5711 555 144 0 0 chr1 4441483 4441573 -238222780 + L1PA16 LINE L1 5623 5712 -454 1996 141 10 10 chr1 4441598 4441902 -238222451 + L1P4 LINE L1 5183 5488 -678 2344 115 0 3 chr1 4441902 4442215 -238222138 + AluSq SINE Alu 1 312 -1 1996 141 10 10 chr1 4442215 4442322 -238222031 + L1P4 LINE L1 5488 5593 -573 959 263 13 52 chr1 4442322 4442630 -238221723 + L2 LINE L2 428 723 -2591 331 228 22 0 chr1 4442643 4442735 -238221618 - MLT1J1 LTR MaLR -8 438 345 2913 288 149 18 chr1 4442739 4444102 -238220251 + L2 LINE L2 1089 2629 -685 593 323 138 14 chr1 4444231 4444774 -238219579 + L2 LINE L2 1153 1627 -1686 2080 140 0 19 chr1 4444774 4445089 -238219264 - AluJo SINE Alu -3 309 1 593 323 138 14 chr1 4445089 4445107 -238219246 + L2 LINE L2 1627 3309 -4 2173 128 0 0 chr1 4445511 4445799 -238218554 + AluSx SINE Alu 2 289 -23 208 135 0 0 chr1 4445799 4445836 -238218517 + (TA)n Simple_repeat Simple_repeat 1 37 0 365 266 121 62 chr1 4445838 4446094 -238218259 - L1MC5 LINE L1 -119 7842 7572 310 289 46 64 chr1 4445962 4446135 -238218218 + L1MCa LINE L1 1907 2076 -4350 * 29 28 0 0 chr1 4446141 4446177 -238218176 + AT_rich Low_complexity Low_complexity 1 36 0 691 245 84 88 chr1 4446750 4447011 -238217342 - MIR SINE MIR 0 262 3 24 0 0 0 chr1 4447534 4447558 -238216795 + AT_rich Low_complexity Low_complexity 1 24 0 187 326 0 0 chr1 4448454 4448500 -238215853 + L2 LINE L2 3211 3256 -16 * 217 262 0 0 chr1 4448468 4448510 -238215843 + MIR SINE MIR 221 262 0 310 304 32 16 chr1 4448650 4448775 -238215578 - MIR3 SINE MIR -21 187 61 2246 147 70 29 chr1 4449259 4449674 -238214679 + MSTB1 LTR MaLR 1 432 0 1491 188 35 48 chr1 4450855 4451034 -238213319 - MLT1B LTR MaLR -16 374 194 390 108 0 0 chr1 4451034 4451099 -238213254 + (TG)n Simple_repeat Simple_repeat 1 65 0 1491 188 35 48 chr1 4451099 4451292 -238213061 - MLT1B LTR MaLR -196 194 7 262 275 117 25 chr1 4451667 4451787 -238212566 - MIR SINE MIR -71 191 61 296 327 30 0 chr1 4452687 4452788 -238211565 + MIR SINE MIR 47 150 -112 261 283 0 0 chr1 4452816 4452876 -238211477 - MIR SINE MIR 0 262 203 284 219 38 6 chr1 4453519 4453679 -238210674 + (CA)n Simple_repeat Simple_repeat 1 165 0 497 236 16 39 chr1 4453695 4453877 -238210476 + (CA)n Simple_repeat Simple_repeat 1 178 0 290 219 22 17 chr1 4453900 4453936 -238210417 + (CA)n Simple_repeat Simple_repeat 1 35 -144 2502 73 0 13 chr1 4453936 4454237 -238210116 + AluY SINE Alu 1 297 -14 290 219 22 17 chr1 4454237 4454378 -238209975 + (CA)n Simple_repeat Simple_repeat 35 179 0 390 196 32 6 chr1 4454394 4454552 -238209801 + (CA)n Simple_repeat Simple_repeat 1 162 0 417 204 36 0 chr1 4454596 4454763 -238209590 + (CA)n Simple_repeat Simple_repeat 1 173 0 397 199 29 14 chr1 4454799 4455076 -238209277 + (CA)n Simple_repeat Simple_repeat 1 281 0 234 89 36 18 chr1 4455120 4455176 -238209177 + (CA)n Simple_repeat Simple_repeat 1 57 0 874 219 80 0 chr1 4457272 4457459 -238206894 - MER20 DNA MER1_type -17 202 1 180 345 54 24 chr1 4460680 4460848 -238203505 + MIR3 SINE MIR 4 176 -32 1191 151 10 0 chr1 4462328 4462520 -238201833 - AluJb SINE Alu -110 202 9 393 338 17 79 chr1 4462688 4462771 -238201582 - L2 LINE L2 -1 3271 3184 1724 111 12 80 chr1 4462771 4463095 -238201258 + AluSq SINE Alu 4 305 -8 393 338 17 79 chr1 4463095 4463301 -238201052 - L2 LINE L2 -88 3184 3000 2362 74 0 6 chr1 4463859 4464171 -238200182 + AluY SINE Alu 1 310 -1 2626 232 32 41 chr1 4464264 4464675 -238199678 + L1ME2 LINE L1 5412 5814 -350 2454 53 0 0 chr1 4464675 4464974 -238199379 + AluY SINE Alu 1 299 -12 2626 232 32 41 chr1 4464974 4465312 -238199041 + L1ME2 LINE L1 5814 6154 -10 332 223 25 122 chr1 4465373 4465570 -238198783 + L1MC4 LINE L1 7864 8041 -1 189 298 0 0 chr1 4465674 4465721 -238198632 + L3 LINE CR1 370 416 -1161 1726 159 13 29 chr1 4466331 4466646 -238197707 - AluJo SINE Alu -2 310 1 210 211 0 0 chr1 4466712 4466750 -238197603 + MIR SINE MIR 211 248 -14 1826 129 42 11 chr1 4466762 4467048 -238197305 + AluSq SINE Alu 1 295 -18 632 333 134 19 chr1 4467179 4468165 -238196188 + L2 LINE L2 1895 3056 -216 640 316 73 29 chr1 4468171 4468202 -238196151 - L2 LINE L2 -1 3312 3284 2212 130 41 36 chr1 4468202 4468564 -238195789 + THE1B LTR MaLR 1 364 0 640 316 73 29 chr1 4468564 4469089 -238195264 - L2 LINE L2 -29 3284 2724 2951 210 19 26 chr1 4469099 4469724 -238194629 - L1MB8 LINE L1 -20 6158 5538 200 234 94 0 chr1 4469755 4469819 -238194534 - L2 LINE L2 -618 2696 2627 730 331 131 21 chr1 4469860 4470633 -238193720 - L2 LINE L2 -2270 1044 187 325 302 71 39 chr1 4470644 4470826 -238193527 + L2 LINE L2 3124 3311 -2 2117 122 0 0 chr1 4472225 4472529 -238191824 - AluSx SINE Alu -8 304 1 2333 72 0 0 chr1 4472871 4473163 -238191190 - AluY SINE Alu -19 292 1 292 301 77 42 chr1 4473178 4473321 -238191032 - L1M1 LINE L1 -658 5647 5500 1642 250 117 101 chr1 4473329 4473606 -238190747 - L1MB8 LINE L1 -732 5432 5161 2125 110 0 10 chr1 4473606 4473906 -238190447 - AluSx SINE Alu -13 299 3 1642 250 117 101 chr1 4473906 4474519 -238189834 - L1MB8 LINE L1 -1003 5161 4559 246 62 0 0 chr1 4474529 4474561 -238189792 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 1705 152 46 7 chr1 4474561 4474833 -238189520 - AluJo SINE Alu -26 286 1 1642 250 117 101 chr1 4474833 4475192 -238189161 - L1MB8 LINE L1 -1605 4559 4207 2072 109 0 3 chr1 4475192 4475500 -238188853 - AluSx SINE Alu 0 308 2 1642 250 117 101 chr1 4475500 4476312 -238188041 - L1MB8 LINE L1 -1957 4207 3409 1677 131 16 74 chr1 4476312 4476624 -238187729 - AluSx SINE Alu -18 294 1 1642 250 117 101 chr1 4476624 4477095 -238187258 - L1MB8 LINE L1 -2755 3409 2848 3543 60 2 0 chr1 4477095 4477541 -238186812 - L1PA8 LINE L1 0 6172 5726 1642 250 117 101 chr1 4477541 4477889 -238186464 - L1MB8 LINE L1 -3316 2848 2507 213 160 67 143 chr1 4478113 4478232 -238186121 + L2 LINE L2 2926 3035 -237 217 272 99 25 chr1 4478239 4478320 -238186033 + L2 LINE L2 3222 3308 -5 2089 201 23 12 chr1 4478400 4478832 -238185521 - L1MB5 LINE L1 -6 6168 5732 2118 105 10 0 chr1 4478951 4479247 -238185106 - AluSq SINE Alu -14 299 1 1982 129 3 3 chr1 4480191 4480485 -238183868 - AluSp SINE Alu -19 294 1 23 0 0 0 chr1 4480491 4480514 -238183839 + AT_rich Low_complexity Low_complexity 1 23 0 261 83 0 0 chr1 4481841 4481877 -238182476 + (TG)n Simple_repeat Simple_repeat 2 37 0 657 222 13 20 chr1 4483623 4483776 -238180577 - MLT1J2 LTR MaLR -263 187 36 2551 304 87 25 chr1 4486012 4486882 -238177471 + L1MC4a LINE L1 2432 3246 -2900 2027 108 31 0 chr1 4486882 4487168 -238177185 + AluSq SINE Alu 1 295 -18 2551 304 87 25 chr1 4487168 4487309 -238177044 + L1MC4a LINE L1 3246 3377 -2769 1700 177 20 0 chr1 4487309 4487609 -238176744 - AluJb SINE Alu -6 306 1 2551 304 87 25 chr1 4487609 4489055 -238175298 + L1MC4a LINE L1 3377 5044 -1102 1029 184 192 16 chr1 4489056 4489311 -238175042 + AluY SINE Alu 1 300 -11 2193 232 83 36 chr1 4489314 4489800 -238174553 + L1MC4a LINE L1 5039 5090 -1056 2067 174 76 2 chr1 4489800 4490197 -238174156 - MSTB LTR MaLR 0 426 1 2193 232 83 36 chr1 4490197 4490527 -238173826 + L1MC4a LINE L1 5090 5403 -743 326 264 181 19 chr1 4490530 4490685 -238173668 + L1ME1 LINE L1 5982 6161 -5 3827 95 39 0 chr1 4490751 4491317 -238173036 + L1MA2 LINE L1 5717 6304 0 2462 231 85 37 chr1 4491325 4492278 -238172075 + L1MC4a LINE L1 5925 6923 -885 2386 167 119 101 chr1 4492336 4493115 -238171238 + L1MC4 LINE L1 7262 8042 0 220 271 84 19 chr1 4493117 4493224 -238171129 + MIR SINE MIR 143 256 -6 262 230 81 14 chr1 4493338 4493412 -238170941 + MIR SINE MIR 23 101 -107 211 192 77 19 chr1 4493509 4493561 -238170792 - L2 LINE L2 0 3313 3259 234 207 103 0 chr1 4494031 4494089 -238170264 + MER5C DNA MER1_type 27 90 -234 23 33 0 0 chr1 4494390 4494420 -238169933 + AT_rich Low_complexity Low_complexity 1 30 0 2122 111 54 40 chr1 4494692 4495062 -238169291 - THE1C LTR MaLR 0 375 1 3733 183 24 6 chr1 4495095 4495818 -238168535 - L1MB3 LINE L1 -7 6176 5441 525 245 31 33 chr1 4495945 4496170 -238168183 + L1MC4a LINE L1 5670 5897 -224 6185 98 10 9 chr1 4496193 4497087 -238167266 + L1PB1 LINE L1 5256 6150 -1 235 258 10 31 chr1 4497131 4497228 -238167125 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 479 264 104 12 chr1 4497564 4497727 -238166626 - MIR SINE MIR -15 247 70 296 218 158 45 chr1 4498678 4498811 -238165542 + MIR3 SINE MIR 33 180 -28 324 289 132 0 chr1 4499491 4499605 -238164748 - MIR SINE MIR -87 175 47 2127 91 3 7 chr1 4499866 4500164 -238164189 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr1 4501190 4501220 -238163133 + AT_rich Low_complexity Low_complexity 1 30 0 428 325 54 30 chr1 4502007 4502302 -238162051 + MLT1I LTR MaLR 42 343 -66 2128 105 7 0 chr1 4502534 4502828 -238161525 + AluSx SINE Alu 1 296 -16 1675 136 213 28 chr1 4502832 4503193 -238161160 + MSTA LTR MaLR 1 428 0 450 0 0 0 chr1 4504426 4504476 -238159877 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 268 115 38 chr1 4504477 4504634 -238159719 - MIR SINE MIR -47 215 47 397 298 55 38 chr1 4505346 4505581 -238158772 + L2 LINE L2 2818 3056 -257 421 300 43 43 chr1 4505705 4505935 -238158418 + L2 LINE L2 3083 3312 -1 244 174 0 212 chr1 4506692 4506824 -238157529 - L1ME2 LINE L1 -167 5997 5894 2673 168 61 99 chr1 4506834 4507668 -238156685 - L1MC4 LINE L1 0 8042 7241 11125 208 45 29 chr1 4507673 4510615 -238153738 - L1MB7 LINE L1 -1 6183 3289 2402 56 0 28 chr1 4510615 4510935 -238153418 - AluY SINE Alu 0 311 1 11125 208 45 29 chr1 4510935 4511561 -238152792 - L1MB7 LINE L1 -2895 3289 2674 237 65 0 0 chr1 4511561 4511592 -238152761 + (TTA)n Simple_repeat Simple_repeat 2 32 0 11125 208 45 29 chr1 4511592 4511615 -238152738 - L1MB7 LINE L1 -3510 2674 2653 2365 77 3 3 chr1 4511615 4511926 -238152427 - AluY SINE Alu 0 311 1 1826 131 18 0 chr1 4511926 4512200 -238152153 - AluSq SINE Alu -34 279 1 11125 208 45 29 chr1 4512200 4512487 -238151866 - L1MB7 LINE L1 -3530 2654 2237 1023 281 93 24 chr1 4512481 4513243 -238151110 - L1M4 LINE L1 -963 5183 4369 * 500 234 45 7 chr1 4513321 4513475 -238150878 - L1ME2 LINE L1 -284 5886 5727 349 292 42 14 chr1 4513478 4513622 -238150731 - L1ME2 LINE L1 -574 5590 5443 275 273 50 72 chr1 4513942 4514081 -238150272 - L2 LINE L2 -10 3262 3127 203 268 18 0 chr1 4515046 4515102 -238149251 + (TTTG)n Simple_repeat Simple_repeat 1 57 0 186 187 55 143 chr1 4515222 4515313 -238149040 + L2 LINE L2 3140 3222 -91 4398 191 48 66 chr1 4516609 4517771 -238146582 - L1MD3 LINE L1 0 8041 6914 372 317 32 68 chr1 4517780 4518001 -238146352 - L1MC4 LINE L1 -1 8041 7829 1271 237 12 36 chr1 4518049 4518382 -238145971 - L1ME2 LINE L1 -19 6145 5821 * 2283 220 106 82 chr1 4518381 4519334 -238145019 - L1MC4a LINE L1 -963 6845 5870 * 5277 192 35 36 chr1 4519322 4520406 -238143947 - L1MD1 LINE L1 0 6242 5158 6318 35 0 0 chr1 4520406 4521145 -238143208 - L1PA4 LINE L1 -1 6154 5416 5277 192 35 36 chr1 4521145 4521158 -238143195 - L1MD1 LINE L1 -1084 5158 5146 2079 131 0 0 chr1 4521158 4521463 -238142890 - AluY SINE Alu -6 305 1 5277 192 35 36 chr1 4521463 4521881 -238142472 - L1MD1 LINE L1 -1096 5146 4735 486 220 112 100 chr1 4522003 4522188 -238142165 - L1MD1 LINE L1 -2991 3155 2965 2217 101 0 0 chr1 4522188 4522486 -238141867 - AluSx SINE Alu -9 303 6 486 220 112 100 chr1 4522486 4522550 -238141803 - L1MD1 LINE L1 -3181 2965 2903 344 299 58 7 chr1 4522566 4522703 -238141650 - L1MD1 LINE L1 -3323 2823 2680 2250 133 123 5 chr1 4522756 4523139 -238141214 - MSTA LTR MaLR 0 428 1 269 118 20 0 chr1 4523285 4523336 -238141017 + CT-rich Low_complexity Low_complexity 1 52 0 1512 167 31 0 chr1 4523342 4523600 -238140753 - AluSx SINE Alu -46 266 1 625 313 72 23 chr1 4523643 4523841 -238140512 - L1MD1 LINE L1 -3681 2465 2245 2419 115 33 8 chr1 4523841 4524207 -238140146 + THE1C LTR MaLR 1 375 0 625 313 72 23 chr1 4524207 4524312 -238140041 - L1MD1 LINE L1 -3901 2245 2147 1055 133 6 12 chr1 4526157 4526322 -238138031 + U1 snRNA snRNA 1 164 -1 270 0 0 0 chr1 4526340 4526370 -238137983 + (A)n Simple_repeat Simple_repeat 1 30 0 1756 182 34 58 chr1 4526386 4526551 -238137802 + MLT1A2 LTR MaLR 3 170 -204 860 148 0 15 chr1 4526551 4526686 -238137667 + FLAM_C SINE Alu 1 133 0 1756 182 34 58 chr1 4526686 4526899 -238137454 + MLT1A2 LTR MaLR 170 372 -2 183 296 19 0 chr1 4526981 4527035 -238137318 + L2 LINE L2 3218 3272 0 182 37 37 0 chr1 4528077 4528104 -238136249 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 247 299 26 17 chr1 4528225 4528342 -238136011 - MER103 DNA DNA -48 118 1 329 314 107 6 chr1 4528441 4528600 -238135753 + MIR SINE MIR 22 196 -66 372 43 0 0 chr1 4528701 4528747 -238135606 + (CA)n Simple_repeat Simple_repeat 1 46 0 253 330 136 11 chr1 4529575 4529751 -238134602 + MIR SINE MIR 33 230 -32 261 57 0 0 chr1 4529944 4529979 -238134374 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 202 289 228 35 chr1 4529991 4530105 -238134248 - L2 LINE L2 -1 3271 3136 402 187 0 0 chr1 4530115 4530206 -238134147 + (TG)n Simple_repeat Simple_repeat 1 91 0 208 167 19 37 chr1 4530251 4530305 -238134048 - L2 LINE L2 -194 3078 3026 2212 82 3 3 chr1 4531889 4532181 -238132172 - AluY SINE Alu -19 292 1 324 259 101 84 chr1 4533256 4533603 -238130750 - L1ME4a LINE L1 -1 6120 5768 2331 75 0 3 chr1 4533624 4533930 -238130423 - AluY SINE Alu -6 305 1 2158 106 0 6 chr1 4534115 4534426 -238129927 - AluSp SINE Alu -4 309 1 450 64 0 64 chr1 4535118 4535196 -238129157 + Alu SINE Alu 1 73 -236 477 188 0 43 chr1 4536220 4536406 -238127947 + G-rich Low_complexity Low_complexity 3 180 0 194 191 21 0 chr1 4536410 4536457 -238127896 + GA-rich Low_complexity Low_complexity 3 50 0 216 0 0 0 chr1 4538125 4538149 -238126204 + (TG)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr1 4538148 4538171 -238126182 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 2011 121 7 17 chr1 4538172 4538470 -238125883 - AluSx SINE Alu -17 295 1 194 228 152 33 chr1 4538563 4538655 -238125698 + MIR SINE MIR 89 191 -71 383 207 97 48 chr1 4539308 4539453 -238124900 + L2 LINE L2 3152 3303 -10 291 273 106 15 chr1 4540436 4540568 -238123785 + L2 LINE L2 2680 2823 -491 253 289 58 19 chr1 4540564 4540668 -238123685 + L2 LINE L2 2933 3040 -232 * 222 328 168 42 chr1 4541252 4541371 -238122982 + L2 LINE L2 3176 3309 -4 2051 131 0 0 chr1 4541586 4541884 -238122469 - AluSx SINE Alu -14 298 1 187 219 0 96 chr1 4542042 4542115 -238122238 + MIR SINE MIR 162 227 -35 1866 130 7 7 chr1 4542142 4542441 -238121912 + AluSx SINE Alu 1 299 -13 550 287 37 21 chr1 4543335 4543523 -238120830 + MIR SINE MIR 60 250 -12 317 290 30 60 chr1 4544739 4544839 -238119514 - MIR SINE MIR -146 116 20 258 244 0 26 chr1 4544860 4544938 -238119415 - L1MC5 LINE L1 -46 7915 7840 633 251 84 11 chr1 4545074 4545265 -238119088 + MIR SINE MIR 14 218 -44 234 321 46 30 chr1 4545371 4545399 -238118954 - L2 LINE L2 -4 3268 3242 2095 115 3 0 chr1 4545399 4545694 -238118659 + AluSx SINE Alu 1 296 -16 234 321 46 30 chr1 4545694 4545796 -238118557 - L2 LINE L2 -30 3242 3136 197 245 0 0 chr1 4545800 4545849 -238118504 + MIR SINE MIR 211 259 -3 2839 197 24 100 chr1 4545871 4546485 -238117868 - L1MC5 LINE L1 -132 7829 7327 2192 127 61 58 chr1 4546485 4546880 -238117473 - MSTD LTR MaLR 0 396 1 2839 197 24 100 chr1 4546880 4547316 -238117037 - L1MC5 LINE L1 -634 7327 6859 1704 157 56 0 chr1 4547316 4547603 -238116750 - AluSx SINE Alu -9 303 1 5487 182 55 32 chr1 4547636 4549178 -238115175 + L1M4 LINE L1 4020 5588 -590 357 332 40 60 chr1 4549216 4549444 -238114909 - L1M4 LINE L1 -1024 5122 4891 2300 81 13 0 chr1 4549444 4549569 -238114784 + AluY SINE Alu 1 123 -188 351 0 0 0 chr1 4549569 4549608 -238114745 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2300 81 13 0 chr1 4549608 4549789 -238114564 + AluY SINE Alu 123 311 0 357 332 40 60 chr1 4549789 4550130 -238114223 - L1M4 LINE L1 -1255 4891 4564 * 4064 89 6 18 chr1 4550120 4550609 -238113744 - L1PA4 LINE L1 -1088 5058 4593 7760 29 0 1 chr1 4550609 4551703 -238112650 + L1PA4 LINE L1 5063 6155 0 4064 89 6 18 chr1 4551703 4551915 -238112438 - L1P LINE L1 -1553 4593 4380 231 160 0 20 chr1 4551973 4552023 -238112330 - LTR66 LTR ERVL -168 442 394 221 30 61 0 chr1 4552025 4552058 -238112295 + (CATA)n Simple_repeat Simple_repeat 4 38 0 21 0 0 0 chr1 4552125 4552146 -238112207 + AT_rich Low_complexity Low_complexity 1 21 0 672 254 25 99 chr1 4552554 4552908 -238111445 - LTR16C LTR ERVL -1 490 163 279 159 0 0 chr1 4553039 4553083 -238111270 + MIR SINE MIR 141 184 -78 1756 112 34 4 chr1 4553468 4553736 -238110617 - AluSq SINE Alu -8 305 30 298 301 87 68 chr1 4558382 4558648 -238105705 - L2 LINE L2 -7 3265 2995 258 136 0 0 chr1 4558651 4558695 -238105658 + (TG)n Simple_repeat Simple_repeat 1 44 0 471 269 200 28 chr1 4558720 4559152 -238105201 - L1ME2 LINE L1 -279 5885 5367 626 262 37 21 chr1 4560379 4560566 -238103787 - MIR SINE MIR -62 200 11 1921 90 0 11 chr1 4561829 4562097 -238102256 + L1PA7 LINE L1 5887 6151 -3 28 29 0 0 chr1 4562097 4562132 -238102221 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr1 4563005 4563034 -238101319 + AT_rich Low_complexity Low_complexity 1 29 0 2405 52 7 3 chr1 4563075 4563382 -238100971 + AluY SINE Alu 1 308 -3 911 170 13 0 chr1 4563457 4563610 -238100743 - MLT1A1 LTR MaLR 0 365 211 1126 197 4 56 chr1 4563679 4563928 -238100425 - MLT1A1 LTR MaLR -120 245 10 248 232 36 0 chr1 4564053 4564109 -238100244 - MIR SINE MIR -69 193 136 545 187 179 0 chr1 4564474 4564608 -238099745 + MER53 DNA DNA 32 189 0 422 257 194 14 chr1 4566175 4566319 -238098034 + MER5A DNA MER1_type 14 183 -6 306 345 109 65 chr1 4566375 4566668 -238097685 - L3b LINE CR1 -95 1488 1183 322 276 26 60 chr1 4566668 4566784 -238097569 + L2 LINE L2 3201 3312 -1 1187 163 20 0 chr1 4566812 4567008 -238097345 - MER58A DNA MER1_type -24 200 1 2187 89 0 0 chr1 4569077 4569368 -238094985 + AluSq SINE Alu 1 291 -22 183 265 61 0 chr1 4569562 4569611 -238094742 + L2 LINE L2 3221 3272 0 448 183 19 10 chr1 4570981 4571085 -238093268 - MER5A DNA MER1_type -74 115 11 845 163 141 105 chr1 4571960 4572102 -238092251 + MER33 DNA MER1_type 1 137 -2448 2053 129 0 16 chr1 4572102 4572411 -238091942 - AluSx SINE Alu -8 304 1 845 163 141 105 chr1 4572411 4572581 -238091772 + MER33 DNA MER1_type 137 324 0 491 292 88 71 chr1 4573261 4573793 -238090560 - L2 LINE L2 0 3272 2727 818 288 58 53 chr1 4574746 4575232 -238089121 + L1MEc LINE L1 254 741 -5866 1001 312 46 15 chr1 4575256 4575801 -238088552 + L1MEc LINE L1 715 1276 -5331 2193 243 52 19 chr1 4575810 4576381 -238087972 - MLT1E LTR MaLR -3 590 1 718 266 139 33 chr1 4576381 4576963 -238087390 + L1MEc LINE L1 1087 1772 -4656 326 177 0 48 chr1 4576991 4577053 -238087300 - L1MCa LINE L1 -4362 2064 2006 308 250 0 0 chr1 4577022 4577086 -238087267 - L1MC4 LINE L1 -1339 6983 6920 * 2276 95 0 3 chr1 4577089 4577393 -238086960 - AluSq SINE Alu -10 303 1 487 225 6 84 chr1 4577393 4577497 -238086856 + L1MEc LINE L1 1911 1997 -4610 592 260 0 0 chr1 4577497 4577620 -238086733 + FLAM_A SINE Alu 1 123 -10 487 225 6 84 chr1 4577620 4577693 -238086660 + L1MEc LINE L1 1997 2074 -4533 327 232 71 0 chr1 4577698 4577810 -238086543 + L1MEc LINE L1 3271 3390 -3036 1280 245 27 62 chr1 4577824 4578228 -238086125 + MLT1B LTR MaLR 1 390 0 402 242 15 0 chr1 4578229 4578361 -238085992 + L1MEc LINE L1 3401 3534 -2892 441 0 0 0 chr1 4578363 4578412 -238085941 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 996 241 113 3 chr1 4578500 4578873 -238085480 + L1MEc LINE L1 3492 3905 -2521 * 3140 199 11 48 chr1 4578871 4579671 -238084682 + L1MEc LINE L1 4601 5371 -1055 4130 177 62 17 chr1 4579685 4580559 -238083794 + L1MB7 LINE L1 5271 6183 -1 * 8294 229 54 32 chr1 4580546 4581657 -238082696 + L1MEc LINE L1 2052 3138 -3288 2176 111 0 16 chr1 4581657 4581973 -238082380 + AluSx SINE Alu 1 311 -1 8294 229 54 32 chr1 4581973 4583076 -238081277 + L1MEc LINE L1 3138 4216 -2210 234 0 0 0 chr1 4583076 4583102 -238081251 + (TA)n Simple_repeat Simple_repeat 2 27 0 2132 106 0 7 chr1 4583102 4583404 -238080949 - AluSc SINE Alu -7 302 3 8294 229 54 32 chr1 4583404 4584156 -238080197 + L1MEc LINE L1 4215 5062 -1364 324 0 0 0 chr1 4584254 4584290 -238080063 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 154 0 26 chr1 4584790 4584829 -238079524 - L2 LINE L2 -10 3303 3266 288 310 28 35 chr1 4584845 4584987 -238079366 - L1ME LINE L1 -458 5663 5523 387 229 243 7 chr1 4585279 4585423 -238078930 - MIR SINE MIR -49 213 36 478 305 138 31 chr1 4585497 4586062 -238078291 - L2 LINE L2 -1 3312 2680 411 21 0 0 chr1 4588597 4588645 -238075708 + (TG)n Simple_repeat Simple_repeat 1 48 0 229 302 32 0 chr1 4588819 4588882 -238075471 - MIR3 SINE MIR -23 185 121 348 335 39 11 chr1 4589243 4589422 -238074931 + L2 LINE L2 1896 2079 -1235 447 259 17 0 chr1 4589745 4589861 -238074492 + L1ME LINE L1 5667 5784 -337 354 340 113 47 chr1 4590165 4590715 -238073638 + L2 LINE L2 2150 2735 -579 214 241 214 27 chr1 4590738 4590850 -238073503 + MIR SINE MIR 15 147 -115 477 0 0 0 chr1 4590924 4590977 -238073376 + (TTC)n Simple_repeat Simple_repeat 2 54 0 2160 92 0 0 chr1 4590977 4591297 -238073056 - AluSg SINE Alu 0 322 3 183 370 0 12 chr1 4591333 4591414 -238072939 + MIR SINE MIR 166 245 -17 220 319 109 0 chr1 4591492 4591611 -238072742 + L2 LINE L2 2893 3024 -289 250 337 47 0 chr1 4592843 4592929 -238071424 - L2 LINE L2 -30 3242 3153 411 244 22 0 chr1 4593574 4593664 -238070689 + MIR SINE MIR 57 148 -114 1367 179 135 39 chr1 4594421 4594828 -238069525 - MLT1J2 LTR MaLR 0 450 5 500 324 88 6 chr1 4594833 4595003 -238069350 - MIR SINE MIR -62 200 17 2693 118 70 0 chr1 4595664 4596062 -238068291 - MSTA LTR MaLR -2 426 1 205 133 0 0 chr1 4596269 4596299 -238068054 + MIR SINE MIR 116 145 -63 1215 222 61 51 chr1 4596343 4596893 -238067460 + MLT1C LTR MaLR 6 467 0 208 200 22 0 chr1 4597484 4597529 -238066824 + (TTA)n Simple_repeat Simple_repeat 1 46 0 423 244 21 20 chr1 4597685 4597811 -238066542 - MIR SINE MIR -61 147 20 214 215 215 11 chr1 4598182 4598275 -238066078 + MIR SINE MIR 114 225 -37 24 0 0 0 chr1 4598943 4598967 -238065386 + AT_rich Low_complexity Low_complexity 1 24 0 502 290 98 27 chr1 4601840 4602064 -238062289 + MIR SINE MIR 6 245 -17 229 252 63 63 chr1 4602185 4602296 -238062057 + L2 LINE L2 3183 3293 -20 371 315 163 0 chr1 4602429 4602607 -238061746 - L2 LINE L2 0 3313 3107 1172 242 118 25 chr1 4602607 4602962 -238061391 - MLT1E LTR MaLR 0 593 206 669 236 18 48 chr1 4603009 4603174 -238061179 - MIR SINE MIR -91 171 12 1516 297 109 18 chr1 4603213 4603826 -238060527 - L2 LINE L2 -691 2623 1955 484 332 101 29 chr1 4604345 4604731 -238059622 - L1MEc LINE L1 -5941 455 42 228 276 121 0 chr1 4605498 4605556 -238058797 - L2 LINE L2 -2 3270 3206 374 250 33 0 chr1 4605813 4605905 -238058448 + MIR SINE MIR 36 130 -78 492 227 0 25 chr1 4606634 4606772 -238057581 - MER69A DNA AcHobo -42 135 1 2279 84 0 3 chr1 4607192 4607489 -238056864 + AluSq SINE Alu 1 296 -17 661 281 17 22 chr1 4609781 4609959 -238054394 + MIR SINE MIR 85 261 -1 633 276 190 6 chr1 4610370 4610696 -238053657 - L2 LINE L2 -1 3312 2927 1498 214 9 24 chr1 4610704 4611040 -238053313 + L1MB4 LINE L1 5841 6171 -9 507 304 84 49 chr1 4611070 4612163 -238052190 - L1MC/D LINE L1 -803 5343 4636 9292 231 96 26 chr1 4612223 4613572 -238050781 - L1ME1 LINE L1 -156 5944 4691 1427 194 113 7 chr1 4613572 4613881 -238050472 - MER2 DNA MER2_type 0 344 3 9292 231 96 26 chr1 4613881 4616085 -238048268 - L1ME1 LINE L1 -1409 4691 2642 2615 35 0 0 chr1 4616085 4616396 -238047957 - AluYa5 SINE Alu 0 311 1 9292 231 96 26 chr1 4616396 4617112 -238047241 - L1ME1 LINE L1 -3458 2642 1977 1136 231 5 0 chr1 4617112 4617333 -238047020 - MER58A DNA MER1_type -2 222 1 9292 231 96 26 chr1 4617333 4617377 -238046976 - L1ME1 LINE L1 -4123 1977 1938 1106 65 18 12 chr1 4617377 4617547 -238046806 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1906 134 0 0 chr1 4617553 4617828 -238046525 - AluSx SINE Alu -37 275 1 9292 231 96 26 chr1 4617828 4618698 -238045655 - L1ME1 LINE L1 -4166 1934 384 217 369 71 20 chr1 4620841 4621039 -238043314 - L3 LINE CR1 -120 1457 1250 219 345 43 9 chr1 4622239 4622355 -238041998 + MIR3 SINE MIR 4 123 -85 1321 211 85 58 chr1 4622390 4622661 -238041692 - MLT1C LTR MaLR 0 467 178 2302 133 5 29 chr1 4622661 4623045 -238041308 - THE1C LTR MaLR 0 375 1 1321 211 85 58 chr1 4623045 4623218 -238041135 - MLT1C LTR MaLR -289 178 11 306 305 0 0 chr1 4623234 4623316 -238041037 + MIR SINE MIR 178 259 -3 285 304 82 86 chr1 4623430 4623673 -238040680 - L2 LINE L2 -36 3236 2995 645 236 118 0 chr1 4624139 4624300 -238040053 + MIR SINE MIR 62 241 -21 229 189 57 0 chr1 4624554 4624607 -238039746 + Charlie2 DNA MER1_type 2780 2835 -27 385 224 12 12 chr1 4625586 4625671 -238038682 + L2 LINE L2 3228 3312 -1 216 246 0 88 chr1 4625846 4625903 -238038450 - L2 LINE L2 -85 3187 3136 2497 111 98 0 chr1 4626028 4626416 -238037937 + MSTA LTR MaLR 1 426 -2 186 43 0 0 chr1 4626458 4626481 -238037872 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 360 255 51 20 chr1 4626482 4626580 -238037773 - L2 LINE L2 -14 3299 3199 1393 261 19 44 chr1 4626586 4627106 -238037247 - L1MEd LINE L1 -1691 4438 3932 2471 281 77 41 chr1 4627111 4628041 -238036312 - HERV16 LTR ERVL -2372 2624 1661 1369 276 71 19 chr1 4628046 4628513 -238035840 - HERV16 LTR ERVL -3495 1501 1011 1046 287 51 29 chr1 4628641 4629052 -238035301 - HERV16 LTR ERVL -4155 841 422 850 204 64 0 chr1 4629132 4629304 -238035049 - MER58A DNA MER1_type 0 224 42 313 170 0 0 chr1 4629348 4629401 -238034952 + L1ME LINE L1 5514 5566 -600 * 711 270 34 6 chr1 4629398 4629724 -238034629 - L1MEd LINE L1 -2695 3434 3100 294 163 58 12 chr1 4629728 4629814 -238034539 + CT-rich Low_complexity Low_complexity 2 91 0 382 238 54 30 chr1 4629934 4630102 -238034251 - L1MEd LINE L1 -3130 2999 2828 505 277 8 0 chr1 4630123 4630242 -238034111 + L2 LINE L2 2955 3074 -239 959 124 0 20 chr1 4630305 4630458 -238033895 - AluSg/x SINE Alu 0 312 163 475 277 8 23 chr1 4630505 4630635 -238033718 + L2 LINE L2 3185 3312 -1 733 261 159 46 chr1 4630676 4631285 -238033068 - L1MEd LINE L1 -3359 2770 2093 1643 71 5 0 chr1 4631408 4631620 -238032733 + AluSg/x SINE Alu 86 298 -14 870 269 146 25 chr1 4631882 4632626 -238031727 - L2 LINE L2 0 3313 2250 219 36 0 0 chr1 4632643 4632671 -238031682 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1985 127 0 0 chr1 4632673 4632956 -238031397 - AluSx SINE Alu -29 283 1 480 179 42 0 chr1 4632956 4633051 -238031302 - MER69 DNA AcHobo -4 2522 2424 211 284 40 0 chr1 4633102 4633176 -238031177 - L2 LINE L2 -1042 2272 2196 2116 187 52 16 chr1 4633176 4633620 -238030733 + MLT1C LTR MaLR 8 467 0 1182 254 126 36 chr1 4633623 4633932 -238030421 - L2 LINE L2 -1135 2179 1899 2291 50 40 10 chr1 4633932 4634230 -238030123 + AluY SINE Alu 1 307 -4 1182 254 126 36 chr1 4634230 4634506 -238029847 - L2 LINE L2 -1415 1899 1541 659 260 78 70 chr1 4634539 4635013 -238029340 - L1MEd LINE L1 -4613 1697 1228 1455 168 29 19 chr1 4635013 4635322 -238029031 + AluJb SINE Alu 1 312 0 659 260 78 70 chr1 4635322 4635806 -238028547 - L1MEd LINE L1 -5082 1228 700 22 35 0 0 chr1 4636144 4636173 -238028180 + AT_rich Low_complexity Low_complexity 1 29 0 1961 102 15 0 chr1 4637757 4638031 -238026322 + AluSq SINE Alu 1 278 -35 189 0 0 0 chr1 4638036 4638057 -238026296 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 494 148 8 141 chr1 4638160 4638288 -238026065 - Charlie1 DNA MER1_type -20 2741 2631 332 231 194 22 chr1 4638285 4638419 -238025934 - Charlie1 DNA MER1_type -2523 238 82 * 180 125 0 0 chr1 4639609 4639641 -238024712 + (CA)n Simple_repeat Simple_repeat 1 32 0 213 65 0 0 chr1 4641937 4641968 -238022385 + (G)n Simple_repeat Simple_repeat 1 31 0 1017 151 6 17 chr1 4644124 4644296 -238020057 + MLT2D LTR ERVL 6 175 -239 1449 177 28 32 chr1 4644496 4644778 -238019575 + MLT2C2 LTR ERVL 149 429 -35 285 139 28 14 chr1 4644778 4644850 -238019503 + (TA)n Simple_repeat Simple_repeat 2 74 0 264 164 55 0 chr1 4644862 4644917 -238019436 + MLT2C2 LTR ERVL 463 520 0 486 306 111 5 chr1 4645299 4645515 -238018838 - L2 LINE L2 0 3313 3075 361 237 0 0 chr1 4645521 4645597 -238018756 + L1MB3 LINE L1 6089 6164 -19 1886 139 186 6 chr1 4645597 4645957 -238018396 - MSTA LTR MaLR 0 428 4 621 203 8 8 chr1 4645983 4646111 -238018242 + L1MB8 LINE L1 6051 6178 0 282 250 15 0 chr1 4646127 4646195 -238018158 - L2 LINE L2 -229 3084 3016 272 209 252 35 chr1 4646205 4646320 -238018033 - MIR3 SINE MIR -64 144 5 2005 131 20 3 chr1 4646389 4646694 -238017659 - AluSx SINE Alu -2 310 1 1232 206 5 5 chr1 4646824 4647042 -238017311 - MER58A DNA MER1_type 0 224 7 270 153 0 0 chr1 4647334 4647393 -238016960 + CT-rich Low_complexity Low_complexity 4 62 0 564 101 0 0 chr1 4647480 4647569 -238016784 + (TCCA)n Simple_repeat Simple_repeat 4 92 0 329 321 47 0 chr1 4647577 4647683 -238016670 - L2 LINE L2 -6 3266 3156 398 297 8 17 chr1 4648780 4648898 -238015455 - MIR SINE MIR -40 222 106 222 298 38 51 chr1 4649406 4649564 -238014789 - MIR3 SINE MIR -6 202 47 553 326 25 18 chr1 4650552 4650828 -238013525 - L1ME3A LINE L1 -223 5947 5670 259 132 0 0 chr1 4650840 4650878 -238013475 - MLT1G1 LTR MaLR 0 595 558 693 276 67 7 chr1 4651022 4651268 -238013085 - MLT1H1 LTR MaLR -288 242 11 686 269 74 29 chr1 4651287 4651546 -238012807 - L1ME3A LINE L1 -555 5609 5363 2192 70 3 17 chr1 4651546 4651848 -238012505 - AluY SINE Alu -13 298 1 686 269 74 29 chr1 4651848 4652188 -238012165 - L1ME3A LINE L1 -801 5363 4982 413 271 80 53 chr1 4652989 4653177 -238011176 + MIR3 SINE MIR 13 205 -3 1281 230 46 41 chr1 4654342 4654781 -238009572 - MLT1C LTR MaLR -16 451 11 1339 218 103 0 chr1 4656292 4656631 -238007722 - MLT1B LTR MaLR -16 374 1 247 288 100 75 chr1 4657299 4657459 -238006894 - L3 LINE CR1 -79 1498 1335 219 69 0 0 chr1 4657520 4657549 -238006804 + (TG)n Simple_repeat Simple_repeat 1 29 0 255 229 9 29 chr1 4658911 4659016 -238005337 + GA-rich Low_complexity Low_complexity 6 108 0 275 244 0 61 chr1 4659898 4659980 -238004373 + MIR SINE MIR 82 158 -104 511 322 66 13 chr1 4660003 4660210 -238004143 + L2 LINE L2 2143 2364 -950 2380 106 6 0 chr1 4660210 4660521 -238003832 - AluSq SINE Alu 0 313 1 511 322 66 13 chr1 4660521 4660540 -238003813 + L2 LINE L2 2364 2381 -933 4967 126 15 11 chr1 4660547 4660935 -238003418 - L1PA15 LINE L1 -1 6164 5779 2599 64 0 3 chr1 4660935 4661246 -238003107 - AluY SINE Alu -1 310 1 4967 126 15 11 chr1 4661246 4661664 -238002689 - L1PA15 LINE L1 -386 5779 5355 2245 127 0 13 chr1 4661717 4662032 -238002321 + AluSx SINE Alu 1 311 -1 1029 127 6 19 chr1 4662032 4662213 -238002140 + AluJb SINE Alu 134 312 0 769 267 148 33 chr1 4662229 4662773 -238001580 + L2 LINE L2 2421 3047 -266 532 291 92 19 chr1 4663517 4663723 -238000630 + MIR SINE MIR 1 221 -41 346 265 102 7 chr1 4664210 4664357 -237999996 + MIR SINE MIR 45 205 -57 2030 178 102 2 chr1 4666646 4667067 -237997286 - MLT1C LTR MaLR -4 463 1 545 253 35 61 chr1 4667229 4667427 -237996926 + MIR SINE MIR 51 243 -19 254 324 57 22 chr1 4668047 4668278 -237996075 - L2 LINE L2 -2 3270 2965 224 250 44 19 chr1 4669158 4669318 -237995035 + (AGTTG)n Simple_repeat Simple_repeat 1 164 0 296 290 153 27 chr1 4670732 4670915 -237993438 - MIR3 SINE MIR 0 208 3 250 291 23 35 chr1 4670938 4671024 -237993329 - L2 LINE L2 -1 3312 3228 1004 165 43 0 chr1 4671032 4671220 -237993133 - MLT1A1 LTR MaLR 0 365 170 516 121 0 48 chr1 4671243 4671326 -237993027 - AluJ/FRAM SINE Alu -12 300 222 324 70 0 0 chr1 4671655 4671698 -237992655 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 278 235 141 24 chr1 4672851 4672936 -237991417 + L2 LINE L2 3216 3310 -3 195 312 184 0 chr1 4675468 4675577 -237988776 + L2 LINE L2 3136 3264 -8 954 262 128 19 chr1 4676210 4676633 -237987720 - MER77 LTR ERV1 -15 590 122 2528 81 0 0 chr1 4677699 4678009 -237986344 - AluY SINE Alu -1 310 1 2189 95 3 11 chr1 4678038 4678358 -237985995 - AluSx SINE Alu 0 318 1 272 253 152 40 chr1 4678600 4678699 -237985654 + MER20 DNA MER1_type 1 110 -109 209 370 43 0 chr1 4678703 4678795 -237985558 - MIR SINE MIR -84 124 29 471 332 65 14 chr1 4679454 4679671 -237984682 - MIR SINE MIR -33 229 2 690 201 16 58 chr1 4679899 4680088 -237984265 - MER20 DNA MER1_type 0 219 39 269 294 78 10 chr1 4681595 4681697 -237982656 - MIR SINE MIR -105 157 49 192 276 255 0 chr1 4683985 4684083 -237980270 - L2 LINE L2 -1 3271 3149 293 299 120 25 chr1 4684105 4684389 -237979964 - MLT1K LTR MaLR -90 498 188 787 251 22 27 chr1 4684407 4684473 -237979880 + MER58A DNA MER1_type 2 67 -2353 1890 125 4 7 chr1 4684473 4684745 -237979608 + AluSx SINE Alu 38 308 -4 787 251 22 27 chr1 4684745 4684901 -237979452 + MER58A DNA MER1_type 67 223 -1 2107 194 36 2 chr1 4685125 4685574 -237978779 + L1MB5 LINE L1 5711 6174 0 2342 103 3 0 chr1 4687093 4687394 -237976959 + AluSp SINE Alu 3 304 -9 247 213 0 0 chr1 4687719 4687766 -237976587 - MIR SINE MIR -13 249 203 320 160 53 27 chr1 4687861 4687936 -237976417 - MLT1J LTR MaLR -8 503 427 188 35 35 0 chr1 4687936 4687965 -237976388 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 6451 13 5 0 chr1 4687965 4688719 -237975634 - L1PA3 LINE L1 -13 6142 5385 675 274 33 8 chr1 4688772 4689081 -237975272 - MLT1J LTR MaLR -141 370 1 401 0 20 0 chr1 4689623 4689672 -237974681 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 556 241 0 60 chr1 4689739 4689905 -237974448 - L2 LINE L2 0 3313 3158 853 264 39 43 chr1 4690172 4690426 -237973927 + MIR SINE MIR 4 256 -6 250 185 19 0 chr1 4690429 4690483 -237973870 + (ATGGTG)n Simple_repeat Simple_repeat 1 55 0 396 217 0 0 chr1 4690506 4690644 -237973709 + (ATG)n Simple_repeat Simple_repeat 2 139 0 204 234 170 21 chr1 4690653 4690747 -237973606 - L2 LINE L2 -21 3292 3185 1724 85 0 0 chr1 4691890 4692101 -237972252 - AluY SINE Alu -15 296 86 262 400 52 0 chr1 4693431 4693586 -237970767 + MIR SINE MIR 50 212 -50 199 321 84 68 chr1 4693741 4693990 -237970363 + L2 LINE L2 2015 2267 -1047 408 254 145 29 chr1 4694854 4694992 -237969361 + MIR SINE MIR 47 200 -62 316 287 17 9 chr1 4697289 4697404 -237966949 + MIR SINE MIR 63 178 -84 2308 91 14 0 chr1 4697798 4698094 -237966259 - AluSp SINE Alu -13 300 1 270 0 0 0 chr1 4698126 4698156 -237966197 + (TG)n Simple_repeat Simple_repeat 2 31 0 363 271 0 0 chr1 4698183 4698268 -237966085 - MIR SINE MIR -100 162 78 2961 220 49 39 chr1 4698295 4698939 -237965414 - L1ME1 LINE L1 -11 6155 5519 1566 144 9 114 chr1 4698939 4699056 -237965297 + AluJo SINE Alu 1 129 -183 2282 98 10 0 chr1 4699056 4699352 -237965001 - AluSp SINE Alu -14 299 1 1566 144 9 114 chr1 4699352 4699394 -237964959 + AluJo SINE Alu 129 174 -138 1915 118 22 4 chr1 4699394 4699665 -237964688 + AluSx SINE Alu 5 280 -32 249 33 0 0 chr1 4699665 4699695 -237964658 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 1566 144 9 114 chr1 4699695 4699867 -237964486 + AluJo SINE Alu 172 299 -13 2961 220 49 39 chr1 4699867 4700044 -237964309 - L1ME1 LINE L1 -647 5519 5326 1656 143 4 50 chr1 4700052 4700332 -237964021 - AluJo SINE Alu -2 310 44 15125 186 24 30 chr1 4700360 4701609 -237962744 - L1MA6 LINE L1 0 7719 6464 420 37 0 0 chr1 4701609 4701663 -237962690 + (TG)n Simple_repeat Simple_repeat 1 54 0 2344 115 0 0 chr1 4701667 4701980 -237962373 - AluSq SINE Alu 0 313 1 15125 186 24 30 chr1 4701980 4702814 -237961539 - L1MA6 LINE L1 -1258 6461 5623 2629 155 19 7 chr1 4702814 4703241 -237961112 + MSTB1 LTR MaLR 1 432 0 15125 186 24 30 chr1 4703241 4704952 -237959401 - L1MA6 LINE L1 -2096 5623 3903 360 0 0 0 chr1 4704952 4704992 -237959361 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 405 0 0 0 chr1 4704991 4705036 -237959317 + (TA)n Simple_repeat Simple_repeat 2 46 0 15125 186 24 30 chr1 4704992 4705840 -237958513 - L1MA6 LINE L1 -3816 3903 3051 2461 143 18 39 chr1 4705840 4706281 -237958072 + MSTB1 LTR MaLR 1 432 0 15125 186 24 30 chr1 4706281 4707588 -237956765 - L1MA6 LINE L1 -4668 3051 2097 3193 197 61 31 chr1 4707673 4708626 -237955727 - L1ME1 LINE L1 -864 5282 4304 207 304 101 32 chr1 4708693 4708851 -237955502 + MIR3 SINE MIR 13 181 -27 410 281 127 91 chr1 4709802 4709870 -237954483 - L2 LINE L2 -30 3242 3178 2260 92 17 3 chr1 4709870 4710164 -237954189 + AluSq SINE Alu 3 300 -13 410 281 127 91 chr1 4710164 4710428 -237953925 - L2 LINE L2 -94 3178 2899 496 291 53 5 chr1 4710558 4710747 -237953606 - MIR SINE MIR -15 247 50 265 317 67 0 chr1 4710802 4710922 -237953431 - MIR SINE MIR -14 248 121 188 53 35 70 chr1 4711704 4711761 -237952592 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 1887 164 0 16 chr1 4712152 4712469 -237951884 - AluJb SINE Alu 0 312 1 303 309 122 0 chr1 4712481 4712604 -237951749 + MIR SINE MIR 86 223 -39 399 224 0 0 chr1 4713357 4713464 -237950889 + (CA)n Simple_repeat Simple_repeat 2 108 0 222 361 56 0 chr1 4715031 4715139 -237949214 + L2 LINE L2 3153 3266 -6 318 253 13 0 chr1 4715552 4715627 -237948726 - MIR3 SINE MIR -21 187 112 200 333 121 8 chr1 4716399 4716531 -237947822 - MIR SINE MIR -66 196 50 774 113 0 0 chr1 4717695 4717819 -237946534 + (TG)n Simple_repeat Simple_repeat 1 124 0 1574 81 36 5 chr1 4718133 4718354 -237945999 + AluSc SINE Alu 79 306 -3 187 222 44 0 chr1 4718467 4718512 -237945841 + L2 LINE L2 3226 3272 0 40680 35 2 3 chr1 4718555 4724720 -237939633 - L1PA4 LINE L1 0 6155 4 1353 276 193 15 chr1 4724858 4724991 -237939362 + L2 LINE L2 2008 2116 -1198 2063 134 0 10 chr1 4724991 4725296 -237939057 - AluSx SINE Alu -10 302 1 1353 276 193 15 chr1 4725296 4725832 -237938521 + L2 LINE L2 2116 2796 -518 1117 297 133 39 chr1 4725898 4725941 -237938412 + L2 LINE L2 2048 2086 -1227 2200 118 3 3 chr1 4725941 4726254 -237938099 - AluSq SINE Alu 0 313 1 1117 297 133 39 chr1 4726254 4727313 -237937040 + L2 LINE L2 2086 3311 -2 2255 115 0 3 chr1 4727938 4728251 -237936102 - AluSq SINE Alu -1 312 1 543 274 80 7 chr1 4728284 4728477 -237935876 + MIR SINE MIR 22 233 -29 297 344 94 0 chr1 4729406 4729534 -237934819 - MIR SINE MIR -110 152 13 2270 88 7 0 chr1 4729986 4730291 -237934062 + AluSq SINE Alu 1 307 -6 199 286 0 18 chr1 4732739 4732795 -237931558 - L2 LINE L2 -18 3254 3200 431 316 8 15 chr1 4735020 4735153 -237929200 + L2 LINE L2 3179 3310 -3 219 327 33 43 chr1 4735260 4735471 -237928882 + L2 LINE L2 2717 2925 -389 196 244 58 35 chr1 4735617 4735703 -237928650 + L2 LINE L2 3182 3269 -3 654 295 35 13 chr1 4735898 4736125 -237928228 + MIR SINE MIR 28 259 -3 492 233 0 0 chr1 4736128 4736274 -237928079 + (ATG)n Simple_repeat Simple_repeat 2 147 0 701 156 24 12 chr1 4736277 4736444 -237927909 + (ATGGTG)n Simple_repeat Simple_repeat 4 172 0 2338 96 70 8 chr1 4736491 4736876 -237927477 - MSTA LTR MaLR -11 417 9 569 220 0 16 chr1 4736905 4737087 -237927266 + (ATG)n Simple_repeat Simple_repeat 1 179 0 201 154 0 0 chr1 4737148 4737187 -237927166 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 419 250 0 17 chr1 4737212 4737388 -237926965 + (ATG)n Simple_repeat Simple_repeat 3 175 0 497 284 77 0 chr1 4739003 4739158 -237925195 - MIR SINE MIR -64 198 32 1230 216 23 20 chr1 4740340 4740646 -237923707 + L1MD1 LINE L1 5800 6106 -136 234 0 0 0 chr1 4741246 4741272 -237923081 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 246 260 7 123 chr1 4741273 4741372 -237922981 - L2 LINE L2 -8 3264 3186 1011 194 123 83 chr1 4741372 4741549 -237922804 - MLT1A1 LTR MaLR -1 364 196 1888 151 6 35 chr1 4741549 4741866 -237922487 + AluJb SINE Alu 1 308 -4 1011 194 123 83 chr1 4741866 4742038 -237922315 - MLT1A1 LTR MaLR -169 196 1 246 260 7 123 chr1 4742038 4742084 -237922269 - L2 LINE L2 -86 3186 3136 1292 209 159 0 chr1 4744052 4744430 -237919923 - MLT1C LTR MaLR -28 439 2 299 318 216 25 chr1 4744585 4744947 -237919406 - L2 LINE L2 0 3313 2883 275 350 108 5 chr1 4745554 4745748 -237918605 + MIR SINE MIR 20 233 -29 230 279 103 0 chr1 4746657 4746725 -237917628 + MIR3 SINE MIR 104 178 -30 181 276 171 33 chr1 4748349 4748501 -237915852 - L2 LINE L2 -189 3083 2911 602 358 5 10 chr1 4749342 4749549 -237914804 + MIR SINE MIR 7 212 -50 476 302 31 0 chr1 4749549 4749678 -237914675 - L2 LINE L2 -1 3312 3180 376 316 39 32 chr1 4749993 4750148 -237914205 + L2 LINE L2 3117 3272 0 386 340 62 14 chr1 4751621 4751765 -237912588 - L2 LINE L2 -4 3268 3118 296 376 43 12 chr1 4752681 4752843 -237911510 + MIR3 SINE MIR 27 193 -15 24 32 0 0 chr1 4753074 4753105 -237911248 + AT_rich Low_complexity Low_complexity 1 31 0 214 400 12 0 chr1 4753488 4753568 -237910785 + L3 LINE CR1 1472 1552 -25 296 241 97 14 chr1 4753815 4753960 -237910393 - MER20 DNA MER1_type -57 162 6 372 274 86 8 chr1 4754639 4754756 -237909597 - MIR SINE MIR -122 140 15 2131 166 17 6 chr1 4755290 4755651 -237908702 - MLT1A1 LTR MaLR 0 365 1 2130 123 7 0 chr1 4756261 4756571 -237907782 + AluSx SINE Alu 1 312 0 205 291 55 36 chr1 4756924 4757034 -237907319 + MIR SINE MIR 81 192 -70 339 318 32 16 chr1 4758846 4758972 -237905381 + L2 LINE L2 3144 3271 -1 2348 231 30 0 chr1 4759143 4759701 -237904652 - L1MB5 LINE L1 -13 6161 5587 353 329 124 9 chr1 4761134 4761344 -237903009 - MIR SINE MIR -14 248 15 277 368 0 11 chr1 4761709 4761804 -237902549 - MIR SINE MIR -106 156 63 672 180 6 17 chr1 4762916 4763094 -237901259 + GA-rich Low_complexity Low_complexity 3 178 0 273 256 0 44 chr1 4763747 4763837 -237900516 + C-rich Low_complexity Low_complexity 3 88 0 22 0 0 0 chr1 4763988 4764010 -237900343 + AT_rich Low_complexity Low_complexity 1 22 0 288 355 50 21 chr1 4764990 4765131 -237899222 + MIR SINE MIR 38 182 -80 332 327 27 9 chr1 4765870 4765980 -237898373 + MIR SINE MIR 20 131 -131 232 303 81 0 chr1 4766924 4767023 -237897330 + L2 LINE L2 2950 3056 -216 789 156 12 42 chr1 4768118 4768285 -237896068 + MER3 DNA MER1_type 48 209 0 1050 82 0 0 chr1 4768845 4768979 -237895374 - AluSp/q SINE Alu -14 299 166 2044 114 38 0 chr1 4768981 4769271 -237895082 - AluSx SINE Alu -11 301 1 495 213 62 19 chr1 4769274 4769434 -237894919 + MER58 DNA MER1_type 43 209 -132 330 355 69 31 chr1 4770015 4770384 -237893969 + L1MEd LINE L1 895 1302 -1205 28 0 0 0 chr1 4770686 4770714 -237893639 + AT_rich Low_complexity Low_complexity 1 28 0 306 335 101 53 chr1 4771227 4771603 -237892750 + L1MEd LINE L1 2982 3375 -2771 22 0 0 0 chr1 4773629 4773651 -237890702 + AT_rich Low_complexity Low_complexity 1 22 0 237 197 211 0 chr1 4776817 4776888 -237887465 + MARNA DNA Mariner 277 362 -224 219 69 0 0 chr1 4777419 4777448 -237886905 + (TTCC)n Simple_repeat Simple_repeat 1 29 0 185 111 44 0 chr1 4780811 4780856 -237883497 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 288 312 52 13 chr1 4781167 4781321 -237883032 - MIR3 SINE MIR -19 189 30 273 317 10 40 chr1 4782198 4782299 -237882054 - MIR SINE MIR -103 159 62 379 286 0 0 chr1 4783782 4783866 -237880487 + MIR SINE MIR 71 154 -108 373 286 0 0 chr1 4783872 4783956 -237880397 + MIR SINE MIR 71 154 -108 446 325 27 37 chr1 4783962 4784150 -237880203 + MIR SINE MIR 71 256 -6 204 282 70 92 chr1 4785362 4785504 -237878849 - MIR SINE MIR -74 188 50 193 225 0 0 chr1 4785507 4785547 -237878806 - L2 LINE L2 -82 3190 3151 182 328 17 17 chr1 4785996 4786112 -237878241 - L2 LINE L2 -166 3106 2991 204 125 0 0 chr1 4789292 4789324 -237875029 + (CAGCT)n Simple_repeat Simple_repeat 3 34 0 656 228 0 12 chr1 4789553 4790069 -237874284 + (TG)n Simple_repeat Simple_repeat 1 509 0 339 328 173 9 chr1 4790090 4790419 -237873934 + L2 LINE L2 1794 2176 -1138 5983 33 1 2 chr1 4790522 4791316 -237873037 - L1P LINE L1 -1747 4399 3607 7309 56 12 7 chr1 4791316 4792768 -237871585 - SVA Other Other -839 1386 44 6084 114 4 10 chr1 4793299 4794629 -237869724 + L1PA15 LINE L1 4842 6165 0 1138 192 37 4 chr1 4794630 4794875 -237869478 + MLT1A1 LTR MaLR 113 365 0 337 253 118 56 chr1 4794958 4795136 -237869217 - MIR SINE MIR -53 209 21 700 177 7 7 chr1 4796115 4796394 -237867959 + (ATG)n Simple_repeat Simple_repeat 1 279 0 902 139 7 39 chr1 4796328 4796672 -237867681 + (ATGGTG)n Simple_repeat Simple_repeat 1 332 0 720 169 14 41 chr1 4796692 4797058 -237867295 + (ATGGTG)n Simple_repeat Simple_repeat 1 355 0 928 149 9 0 chr1 4797194 4797430 -237866923 + (TCCA)n Simple_repeat Simple_repeat 1 238 0 180 336 168 9 chr1 4797442 4797555 -237866798 - L2 LINE L2 -16 3256 3126 319 212 176 0 chr1 4798569 4798654 -237865699 + MLT2D LTR ERVL 17 116 -298 26168 52 2 9 chr1 4798656 4802304 -237862049 + L1P LINE L1 1 3621 -2525 653 66 11 0 chr1 4802318 4802409 -237861944 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 216 156 16 31 chr1 4802615 4802679 -237861674 + GA-rich Low_complexity Low_complexity 4 66 0 356 301 15 15 chr1 4802742 4802875 -237861478 + GA-rich Low_complexity Low_complexity 4 136 0 684 223 0 0 chr1 4803258 4803568 -237860785 + (TG)n Simple_repeat Simple_repeat 1 310 0 183 42 0 0 chr1 4803568 4803592 -237860761 + (GA)n Simple_repeat Simple_repeat 1 24 0 1296 304 171 7 chr1 4803592 4804713 -237859640 + L2 LINE L2 1794 3110 -203 312 315 70 5 chr1 4804720 4804920 -237859433 - L1MC4 LINE L1 -1 8041 7829 1066 223 12 56 chr1 4804961 4805302 -237859051 - L1ME2 LINE L1 0 6164 5839 414 341 6 43 chr1 4805306 4805470 -237858883 + L2 LINE L2 3149 3306 -7 261 277 219 0 chr1 4806326 4806481 -237857872 - L2 LINE L2 -829 2485 2297 319 265 10 20 chr1 4807511 4807609 -237856744 + MIR SINE MIR 46 142 -66 2361 81 0 0 chr1 4807664 4807959 -237856394 + AluY SINE Alu 1 295 -16 452 320 33 7 chr1 4808845 4808998 -237855355 - MIR3 SINE MIR -34 174 18 766 255 15 25 chr1 4809345 4809549 -237854804 + MER63A DNA MER1_type 1 202 -8 614 251 64 48 chr1 4810060 4810247 -237854106 + MIR SINE MIR 58 247 -15 858 212 0 5 chr1 4810492 4810676 -237853677 - MER96B DNA MER1_type? -186 231 49 190 200 0 109 chr1 4810794 4810849 -237853504 + L2 LINE L2 3201 3249 -23 319 157 29 0 chr1 4811635 4811705 -237852648 + (CA)n Simple_repeat Simple_repeat 1 72 0 210 279 49 0 chr1 4811707 4811768 -237852585 + (CATG)n Simple_repeat Simple_repeat 3 66 0 327 305 17 33 chr1 4811777 4811959 -237852394 - L1MCa LINE L1 -1339 6983 1995 254 257 40 0 chr1 4811983 4812057 -237852296 + (CATATA)n Simple_repeat Simple_repeat 1 77 0 277 195 12 12 chr1 4812061 4812143 -237852210 + (CA)n Simple_repeat Simple_repeat 2 83 0 250 273 227 18 chr1 4812649 4812759 -237851594 - L2 LINE L2 0 3272 3140 2347 65 3 3 chr1 4813526 4813820 -237850533 + AluSx SINE Alu 1 294 -18 633 226 0 0 chr1 4815775 4816244 -237848109 + (CA)n Simple_repeat Simple_repeat 1 469 0 558 242 5 0 chr1 4816256 4816696 -237847657 + (CA)n Simple_repeat Simple_repeat 1 442 0 2111 134 0 0 chr1 4817681 4817986 -237846367 + AluSx SINE Alu 1 305 -7 182 281 53 0 chr1 4820543 4820600 -237843753 + MIR SINE MIR 44 103 -159 342 215 0 0 chr1 4821305 4821435 -237842918 + (TG)n Simple_repeat Simple_repeat 1 130 0 455 222 0 6 chr1 4821454 4821634 -237842719 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 283 0 10 chr1 4821712 4821811 -237842542 + (TG)n Simple_repeat Simple_repeat 1 98 0 229 317 0 0 chr1 4821826 4821886 -237842467 + (TG)n Simple_repeat Simple_repeat 1 60 0 207 204 0 0 chr1 4821925 4821969 -237842384 + (TG)n Simple_repeat Simple_repeat 2 45 0 312 210 17 28 chr1 4821991 4822172 -237842181 + (TG)n Simple_repeat Simple_repeat 2 180 0 180 125 0 0 chr1 4822210 4822242 -237842111 + (TG)n Simple_repeat Simple_repeat 1 32 0 498 224 29 52 chr1 4823329 4823503 -237840850 + MER53 DNA DNA 1 170 -19 209 344 62 0 chr1 4824747 4824843 -237839510 + L2 LINE L2 3154 3255 -17 991 190 78 5 chr1 4828338 4828543 -237835810 - MER58A DNA MER1_type -4 220 1 738 187 42 17 chr1 4829237 4829570 -237834783 - MSTD LTR MaLR 0 396 2 320 288 130 14 chr1 4830022 4830168 -237834185 - MIR SINE MIR -80 182 20 2310 112 0 0 chr1 4830176 4830488 -237833865 - AluSx SINE Alu 0 312 1 546 215 90 7 chr1 4831496 4831640 -237832713 + MIR SINE MIR 77 232 -30 247 368 86 31 chr1 4832394 4832557 -237831796 + MIR SINE MIR 20 191 -71 1180 267 124 2 chr1 4833060 4833502 -237830851 - MLT1J LTR MaLR -9 502 7 336 333 157 0 chr1 4834000 4834153 -237830200 + L3 LINE CR1 1294 1470 -107 1293 202 121 57 chr1 4834735 4835191 -237829162 - MER31A LTR ERV1 0 485 1 233 379 42 0 chr1 4835193 4835288 -237829065 - L2 LINE L2 -23 3249 3151 745 194 27 21 chr1 4835373 4835559 -237828794 + MER20 DNA MER1_type 29 215 -4 1311 166 92 0 chr1 4835562 4835833 -237828520 - MER46C DNA MER2_type -42 296 1 525 319 113 7 chr1 4835833 4836300 -237828053 - L2 LINE L2 -155 3158 2647 204 245 0 0 chr1 4841497 4841546 -237822807 + T-rich Low_complexity Low_complexity 6 54 0 364 303 83 51 chr1 4842233 4842490 -237821863 + L2 LINE L2 2730 3001 -312 2206 108 0 0 chr1 4842490 4842808 -237821545 - AluSq SINE Alu 0 318 1 364 303 83 51 chr1 4842808 4842875 -237821478 + L2 LINE L2 3001 3064 -249 226 261 98 33 chr1 4843553 4843645 -237820708 - MIR SINE MIR -77 131 34 310 287 113 40 chr1 4843845 4843995 -237820358 - L2 LINE L2 0 3313 3153 229 162 0 0 chr1 4844062 4844099 -237820254 + Alu SINE Alu 1 37 -265 1768 140 0 4 chr1 4844099 4844363 -237819990 - AluSx SINE Alu -12 300 38 364 280 47 0 chr1 4846106 4846213 -237818140 + MIR SINE MIR 38 149 -59 271 293 27 0 chr1 4846323 4846398 -237817955 + MIR3 SINE MIR 101 177 -31 263 326 54 16 chr1 4846712 4846841 -237817512 + L2 LINE L2 3138 3271 -1 423 325 100 0 chr1 4847391 4847551 -237816802 + MIR SINE MIR 8 183 -79 637 217 30 18 chr1 4847655 4847821 -237816532 - MER96B DNA MER1_type? -234 183 16 3813 152 126 32 chr1 4848306 4849061 -237815292 - LTR1B LTR ERV1 0 826 1 186 103 0 0 chr1 4851391 4851420 -237812933 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 466 354 143 0 chr1 4851726 4851949 -237812404 + MIR SINE MIR 5 259 -3 229 296 70 0 chr1 4852168 4852239 -237812114 + MIR SINE MIR 60 135 -127 1214 151 11 0 chr1 4852697 4852882 -237811471 + AluSg/x SINE Alu 119 305 -7 799 133 24 12 chr1 4852913 4853079 -237811274 + GA-rich Low_complexity Low_complexity 4 171 0 853 330 142 19 chr1 4853126 4853914 -237810439 - L2 LINE L2 -376 2938 2054 429 264 16 24 chr1 4854399 4854524 -237809829 - MIR SINE MIR -35 227 104 571 309 73 16 chr1 4855986 4856177 -237808176 + MIR SINE MIR 48 249 -13 1169 175 79 21 chr1 4856342 4856633 -237807720 - MLT2D LTR ERVL 0 414 107 798 79 0 40 chr1 4856634 4856760 -237807593 - L1PA8 LINE L1 0 6172 6052 * 7574 31 6 3 chr1 4856755 4857848 -237806505 - L1PA4 LINE L1 -3 6152 5058 306 359 78 51 chr1 4857965 4858221 -237806132 + L1M4 LINE L1 3085 3347 -2799 200 158 18 0 chr1 4859303 4859360 -237804993 + (CA)n Simple_repeat Simple_repeat 1 58 0 320 368 21 7 chr1 4860188 4860332 -237804021 - MIR SINE MIR -14 248 103 406 247 11 0 chr1 4860712 4860805 -237803548 + L2 LINE L2 3179 3272 0 229 248 9 9 chr1 4860805 4860914 -237803439 + GA-rich Low_complexity Low_complexity 2 110 0 307 282 18 45 chr1 4862405 4862515 -237801838 - MER5B DNA MER1_type -36 142 36 226 336 179 9 chr1 4863380 4863603 -237800750 + MIR SINE MIR 2 262 0 234 62 0 0 chr1 4864277 4864309 -237800044 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 339 283 70 89 chr1 4864310 4864568 -237799785 - L2 LINE L2 -15 3298 3046 636 313 119 13 chr1 4865065 4865442 -237798911 - L2 LINE L2 -443 2871 2455 1830 195 120 24 chr1 4865527 4865802 -237798551 - MLT1C LTR MaLR -1 466 219 2147 101 3 0 chr1 4865802 4866088 -237798265 + AluSp SINE Alu 1 287 -26 372 77 0 0 chr1 4866088 4866140 -237798213 + (CA)n Simple_repeat Simple_repeat 2 53 0 1830 195 120 24 chr1 4866140 4866288 -237798065 - MLT1C LTR MaLR -247 220 1 340 255 97 0 chr1 4867533 4867645 -237796708 + MIR SINE MIR 8 133 -75 237 268 0 56 chr1 4868727 4868798 -237795555 + MIR3 SINE MIR 138 204 -4 263 335 44 0 chr1 4869087 4869245 -237795108 - L1ME4a LINE L1 -2 6119 5955 414 321 103 19 chr1 4869258 4869520 -237794833 - L1ME4a LINE L1 -224 5897 5614 255 311 205 6 chr1 4869538 4869699 -237794654 + MIR SINE MIR 70 262 0 1007 189 41 5 chr1 4873434 4873630 -237790723 - L1MD2 LINE L1 -3 6356 6154 207 0 0 0 chr1 4873630 4873653 -237790700 + (TG)n Simple_repeat Simple_repeat 2 24 0 2182 91 0 20 chr1 4873716 4874012 -237790341 - AluSg SINE Alu -16 294 5 3961 224 39 50 chr1 4874014 4875033 -237789320 - L1MD2 LINE L1 -409 5833 4805 2174 110 7 3 chr1 4875033 4875334 -237789019 - AluSq SINE Alu -11 302 1 3961 224 39 50 chr1 4875334 4875764 -237788589 - L1MD2 LINE L1 -1437 4805 4372 2301 86 0 19 chr1 4875764 4876077 -237788276 + AluY SINE Alu 1 307 -4 3961 224 39 50 chr1 4876077 4876089 -237788264 - L1MD2 LINE L1 -1870 4372 4361 1869 134 3 26 chr1 4876089 4876394 -237787959 + AluSg SINE Alu 1 298 -12 3961 224 39 50 chr1 4876394 4876836 -237787517 - L1MD2 LINE L1 -1881 4361 3956 207 167 0 0 chr1 4877111 4877153 -237787200 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 621 170 79 6 chr1 4878116 4878281 -237786072 + MER96B DNA MER1_type? 1 177 -240 260 303 220 8 chr1 4879322 4879454 -237784899 - MIR SINE MIR -54 208 49 252 333 0 0 chr1 4880458 4880587 -237783766 - L1ME4a LINE L1 -5 6116 5988 467 59 0 15 chr1 4880948 4881016 -237783337 + (TGAA)n Simple_repeat Simple_repeat 2 68 0 554 310 59 5 chr1 4881596 4881783 -237782570 - MIR SINE MIR -63 199 3 429 327 140 5 chr1 4881796 4882010 -237782343 + MIR SINE MIR 16 258 -4 308 287 74 9 chr1 4882704 4882812 -237781541 - MIR SINE MIR -124 138 24 187 287 49 91 chr1 4882871 4882967 -237781386 + L2 LINE L2 3176 3266 -47 2336 90 3 7 chr1 4882967 4883277 -237781076 - AluSq SINE Alu -4 309 1 187 287 49 91 chr1 4883277 4883323 -237781030 + L2 LINE L2 3266 3312 -1 249 83 0 0 chr1 4883332 4883368 -237780985 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 370 260 24 32 chr1 4883469 4883592 -237780761 + MIR SINE MIR 107 228 -34 1403 184 26 22 chr1 4884450 4884722 -237779631 - AluJo SINE Alu -1 311 39 2290 102 0 13 chr1 4885782 4886096 -237778257 + AluSx SINE Alu 1 310 -2 315 146 0 0 chr1 4887094 4887149 -237777204 + (GGGGA)n Simple_repeat Simple_repeat 4 58 0 338 251 31 115 chr1 4890183 4890243 -237774110 + MER69A DNA AcHobo 1 64 -2462 982 257 30 5 chr1 4890243 4890445 -237773908 + MER63A DNA MER1_type 1 207 -3 338 251 31 115 chr1 4890445 4890535 -237773818 + MER69A DNA AcHobo 64 134 -2392 1547 160 7 28 chr1 4890535 4890822 -237773531 + AluJo SINE Alu 24 304 -8 338 251 31 115 chr1 4890822 4890861 -237773492 + MER69A DNA AcHobo 134 175 -2 870 256 85 50 chr1 4891246 4891648 -237772705 + Charlie8 DNA MER1_type 56 471 -1946 254 219 96 14 chr1 4891659 4891732 -237772621 - MER91C DNA MER1_type -30 110 32 554 311 75 43 chr1 4892050 4892372 -237771981 + L2 LINE L2 2941 3272 0 204 40 0 0 chr1 4892382 4892407 -237771946 + (TGGA)n Simple_repeat Simple_repeat 4 28 0 235 239 15 30 chr1 4893266 4893333 -237771020 + CT-rich Low_complexity Low_complexity 2 67 0 292 286 26 78 chr1 4894010 4894164 -237770189 + L2 LINE L2 3165 3310 -3 21 0 0 0 chr1 4894192 4894213 -237770140 + AT_rich Low_complexity Low_complexity 1 21 0 943 241 57 75 chr1 4894260 4894403 -237769950 - L1ME4a LINE L1 -3 6118 5974 207 0 0 0 chr1 4894403 4894426 -237769927 + (TTG)n Simple_repeat Simple_repeat 2 24 0 943 241 57 75 chr1 4894426 4894577 -237769776 - L1ME4a LINE L1 -147 5974 5822 1630 96 0 237 chr1 4894577 4894973 -237769380 - AluSx SINE Alu 0 302 1 378 0 0 0 chr1 4894982 4895024 -237769329 + (TG)n Simple_repeat Simple_repeat 2 43 0 2162 77 0 11 chr1 4895024 4895310 -237769043 - AluY SINE Alu -28 283 1 943 241 57 75 chr1 4895310 4895493 -237768860 - L1ME4a LINE L1 -305 5816 5638 3825 91 0 8 chr1 4895493 4896011 -237768342 + MER75 DNA T2_type 1 514 0 681 236 127 0 chr1 4896044 4896201 -237768152 + MER45A DNA AcHobo 2 178 0 2672 93 8 3 chr1 4896206 4896559 -237767794 - THE1A LTR MaLR 0 355 1 1896 177 41 66 chr1 4896758 4897198 -237767155 - MSTB1 LTR MaLR -3 429 1 1064 234 162 13 chr1 4897384 4897778 -237766575 - L1MC4 LINE L1 -143 7899 7447 5068 110 7 21 chr1 4897813 4898089 -237766264 - L1PA10 LINE L1 -1 6167 5889 2455 74 0 3 chr1 4898089 4898401 -237765952 - AluY SINE Alu 0 311 1 5068 110 7 21 chr1 4898401 4898970 -237765383 - L1PA10 LINE L1 -279 5889 5334 686 217 29 11 chr1 4898966 4899141 -237765212 - L1MC4 LINE L1 -627 7415 7238 * 1494 161 140 9 chr1 4899144 4899493 -237764860 - L1MC4 LINE L1 -958 7084 6690 378 0 0 0 chr1 4899494 4899536 -237764817 + (CA)n Simple_repeat Simple_repeat 1 42 0 981 147 76 5 chr1 4899537 4899735 -237764618 - MER2 DNA MER2_type -1 344 133 1192 103 16 0 chr1 4899736 4899921 -237764432 - MER30 DNA MER1_type 0 230 43 448 220 8 42 chr1 4900058 4900176 -237764177 + MER117 DNA MER1_type 66 179 -18 323 296 117 39 chr1 4901748 4901978 -237762375 - L2 LINE L2 0 3313 3066 195 294 15 15 chr1 4901970 4902038 -237762315 - L2 LINE L2 -5 3308 3241 * 243 239 0 0 chr1 4903451 4903518 -237760835 + (TG)n Simple_repeat Simple_repeat 1 67 0 496 278 139 0 chr1 4904086 4904259 -237760094 - MIR SINE MIR -35 227 31 192 271 29 57 chr1 4904263 4904333 -237760020 - MIR SINE MIR -55 153 86 203 138 0 0 chr1 4905245 4905274 -237759079 + (TGAG)n Simple_repeat Simple_repeat 1 29 0 1080 124 0 0 chr1 4905275 4905453 -237758900 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 205 273 36 0 chr1 4906461 4906516 -237757837 - L2 LINE L2 -14 3299 3243 478 250 96 6 chr1 4906573 4906729 -237757624 - MER117 DNA MER1_type -27 170 1 2193 196 44 4 chr1 4908040 4908560 -237755793 - MER74A LTR ERVL -2 556 16 287 265 0 15 chr1 4909074 4909142 -237755211 - MIR SINE MIR -77 185 119 2068 103 7 3 chr1 4909171 4909471 -237754882 + AluSx SINE Alu 1 301 -11 286 317 10 19 chr1 4909542 4909646 -237754707 + MIR3 SINE MIR 106 208 0 340 303 40 0 chr1 4909812 4909911 -237754442 - L2 LINE L2 -2 3270 3168 235 88 0 0 chr1 4912595 4912629 -237751724 + MIR SINE MIR 112 145 -63 200 327 0 0 chr1 4915863 4915915 -237748438 - MIR SINE MIR -76 132 81 270 316 72 20 chr1 4915967 4916119 -237748234 - L2 LINE L2 -75 3238 3079 349 292 0 0 chr1 4916706 4916802 -237747551 + (TG)n Simple_repeat Simple_repeat 1 96 0 317 315 11 28 chr1 4916951 4917129 -237747224 + GA-rich Low_complexity Low_complexity 3 177 0 1502 219 114 6 chr1 4917879 4918066 -237746287 - MLT1B LTR MaLR 0 390 225 222 37 0 0 chr1 4918066 4918093 -237746260 + (GA)n Simple_repeat Simple_repeat 2 28 0 1502 219 114 6 chr1 4918093 4918257 -237746096 - MLT1B LTR MaLR -165 225 1 199 354 50 0 chr1 4918317 4918416 -237745937 + MIR SINE MIR 37 140 -68 237 309 112 59 chr1 4919748 4919900 -237744453 - MER5B DNA MER1_type -2 176 17 744 296 21 0 chr1 4919962 4920202 -237744151 + MIR SINE MIR 16 260 -2 720 175 0 22 chr1 4920221 4920404 -237743949 + (CAT)n Simple_repeat Simple_repeat 1 179 0 636 170 38 31 chr1 4920395 4920716 -237743637 + (CACCAT)n Simple_repeat Simple_repeat 1 323 0 * 3317 130 2 2 chr1 4920817 4921770 -237742583 - L1P4 LINE L1 -382 5783 4831 661 153 8 15 chr1 4921770 4921901 -237742452 - MLT1A1 LTR MaLR -235 130 1 194 304 18 0 chr1 4922394 4922450 -237741903 - MIR SINE MIR -89 173 117 769 244 96 46 chr1 4922551 4922863 -237741490 - MLT1C LTR MaLR -6 587 122 1999 113 0 20 chr1 4922863 4923164 -237741189 - AluSx SINE Alu 0 312 18 769 244 96 46 chr1 4923164 4923207 -237741146 - MLT1C LTR MaLR -471 122 83 444 293 57 0 chr1 4924148 4924288 -237740065 + MIR SINE MIR 109 256 -6 339 291 29 0 chr1 4924621 4924724 -237739629 + MIR SINE MIR 36 141 -67 388 263 51 0 chr1 4924758 4924876 -237739477 + MER117 DNA MER1_type 69 192 -5 2162 81 3 3 chr1 4925107 4925415 -237738938 - AluSx SINE Alu 0 308 1 1777 172 53 42 chr1 4925430 4925791 -237738562 + MLT1A1 LTR MaLR 1 365 0 2542 159 29 31 chr1 5026484 5026988 -237637365 + MER41B LTR ERV1 140 478 0 4712 66 5 0 chr1 5027817 5028405 -237635948 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr1 5028684 5028706 -237635647 + (CA)n Simple_repeat Simple_repeat 2 23 0 242 315 45 0 chr1 5031999 5032110 -237632243 + MIR SINE MIR 113 228 -34 740 247 18 12 chr1 5032385 5032555 -237631798 - MER45A DNA AcHobo 0 178 8 205 267 56 22 chr1 5032638 5032728 -237631625 - MIR SINE MIR -81 181 89 290 274 235 6 chr1 5032873 5033052 -237631301 + MIR SINE MIR 12 231 -31 208 106 21 85 chr1 5033385 5033432 -237630921 + L2 LINE L2 3199 3242 -71 284 118 20 0 chr1 5033434 5033485 -237630868 + MADE1 DNA Mariner 2 53 -27 308 91 127 18 chr1 5033497 5033552 -237630801 + L2 LINE L2 3246 3306 -7 1832 170 5 86 chr1 5033827 5034063 -237630290 - MLT1A1 LTR MaLR -2 363 170 2032 139 7 3 chr1 5034063 5034350 -237630003 - AluSx SINE Alu -24 288 1 1832 170 5 86 chr1 5034350 5034508 -237629845 - MLT1A1 LTR MaLR -195 170 1 2351 134 20 3 chr1 5034607 5034965 -237629388 - THE1B LTR MaLR 0 364 1 1966 177 65 58 chr1 5035157 5035621 -237628732 + MLT1C LTR MaLR 1 467 0 791 275 31 64 chr1 5035625 5035952 -237628401 + MLT1I LTR MaLR 1 316 -93 3371 56 0 77 chr1 5035963 5036003 -237628350 - MLT2A1 LTR ERVL 0 444 403 183 80 0 0 chr1 5036003 5036028 -237628325 + (TA)n Simple_repeat Simple_repeat 2 26 0 3371 56 0 77 chr1 5036028 5036061 -237628292 - MLT2A1 LTR ERVL -41 403 369 252 0 0 0 chr1 5036061 5036089 -237628264 + (TC)n Simple_repeat Simple_repeat 2 29 0 3371 56 0 77 chr1 5036089 5036495 -237627858 - MLT2A1 LTR ERVL -75 369 1 2100 58 11 0 chr1 5036495 5036773 -237627580 - HERVL-A1 LTR ERVL 0 5654 5374 1160 236 45 62 chr1 5038060 5038579 -237625774 + MLT1E3 LTR MaLR 3 601 -23 1511 163 83 18 chr1 5038604 5038880 -237625473 - AluJb SINE Alu -18 294 1 2116 146 42 22 chr1 5039862 5040219 -237624134 - THE1B LTR MaLR 0 364 1 10086 109 82 9 chr1 5040219 5041692 -237622661 - THE1B-int LTR MaLR 0 1580 1 2169 132 36 33 chr1 5041692 5042055 -237622298 - THE1B LTR MaLR 0 364 1 2637 207 100 12 chr1 5042118 5042718 -237621635 + MLT1E1 LTR MaLR 2 654 0 2353 192 65 73 chr1 5042801 5043447 -237620906 - LTR48B LTR ERV1 0 644 4 8228 198 40 42 chr1 5043546 5045966 -237618387 - LTR48B-int LTR ERV1 -159 6172 3712 522 239 0 35 chr1 5046236 5046436 -237617917 - LTR48B-int LTR ERV1 -2378 2493 1745 499 191 9 0 chr1 5046623 5046728 -237617625 - LTR48B-int LTR ERV1 -2878 3453 3348 1983 168 52 5 chr1 5046805 5047174 -237617179 - LTR48B-int LTR ERV1 -2991 3340 2955 5013 201 113 118 chr1 5047207 5047469 -237616884 - LTR48B-int LTR ERV1 -4228 2103 1841 1552 82 5 0 chr1 5047469 5047675 -237616678 - L1PA7 LINE L1 -8 6146 5940 5013 201 113 118 chr1 5047675 5048327 -237616026 - LTR48B-int LTR ERV1 -4490 1841 1187 234 235 59 59 chr1 5048327 5048395 -237615958 - tRNA-Glu-GAG tRNA tRNA -1 74 7 5013 201 113 118 chr1 5048395 5049523 -237614830 - LTR48B-int LTR ERV1 -5144 1187 3 2576 176 37 82 chr1 5049528 5050200 -237614153 - LTR48B LTR ERV1 -1 643 2 302 153 17 0 chr1 5050260 5050319 -237614034 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 376 136 17 0 chr1 5050322 5050381 -237613972 - MLT1E1 LTR MaLR -422 232 173 242 186 114 0 chr1 5050483 5050553 -237613800 - MLT1E1 LTR MaLR -482 172 95 218 257 257 28 chr1 5050792 5050936 -237613417 + MIR SINE MIR 51 227 -35 482 315 67 44 chr1 5052059 5052329 -237612024 - MLT1K LTR MaLR -4 584 309 261 336 171 9 chr1 5052414 5052625 -237611728 + MIR SINE MIR 8 252 -10 189 0 0 0 chr1 5053036 5053057 -237611296 + (CATTG)n Simple_repeat Simple_repeat 5 25 0 315 298 35 18 chr1 5053397 5053511 -237610842 + MIR SINE MIR 90 205 -57 180 125 0 0 chr1 5053602 5053634 -237610719 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 256 330 21 0 chr1 5054089 5054186 -237610167 + MIR SINE MIR 78 176 -86 206 183 0 17 chr1 5054263 5054301 -237610052 + CT-rich Low_complexity Low_complexity 2 40 -20 2419 112 94 5 chr1 5054301 5054694 -237609659 + MSTA LTR MaLR 1 428 0 206 183 0 17 chr1 5054694 5054715 -237609638 + CT-rich Low_complexity Low_complexity 40 60 0 317 157 0 0 chr1 5055999 5056050 -237608303 - MLT2F LTR ERVL 0 663 613 264 245 0 31 chr1 5056054 5056152 -237608201 + (TATATG)n Simple_repeat Simple_repeat 1 95 0 244 163 12 105 chr1 5056152 5056172 -237608181 - MADE1 DNA Mariner 0 80 60 216 0 0 0 chr1 5056172 5056196 -237608157 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 244 163 12 105 chr1 5056196 5056219 -237608134 - MADE1 DNA Mariner -20 60 36 2279 107 3 0 chr1 5056219 5056519 -237607834 + AluSp SINE Alu 1 301 -12 244 163 12 105 chr1 5056519 5056560 -237607793 - MADE1 DNA Mariner -44 36 3 410 285 6 6 chr1 5056562 5056741 -237607612 + (TA)n Simple_repeat Simple_repeat 2 180 0 1702 194 94 11 chr1 5056745 5057106 -237607247 + MSTD LTR MaLR 3 393 -3 279 315 0 0 chr1 5057202 5057345 -237607008 + (TA)n Simple_repeat Simple_repeat 1 143 0 1488 242 24 11 chr1 5057345 5057717 -237606636 - MLT2C1 LTR ERVL -20 377 1 2152 230 63 8 chr1 5057985 5058464 -237605889 - MER70B LTR ERVL -73 505 1 2721 96 6 3 chr1 5058501 5058864 -237605489 + THE1B LTR MaLR 1 364 0 10912 96 34 34 chr1 5058865 5060444 -237603909 + THE1B-int LTR MaLR 2 1580 0 2325 125 17 8 chr1 5060446 5060805 -237603548 + THE1B LTR MaLR 3 364 0 7309 52 0 0 chr1 5060828 5061807 -237602546 - L1PA5 LINE L1 0 6154 5175 33506 59 1 3 chr1 5061818 5065138 -237599215 - L1PA4 LINE L1 0 6155 2851 2473 78 0 3 chr1 5065138 5065447 -237598906 - AluY SINE Alu -3 308 1 33506 59 1 3 chr1 5065447 5068293 -237596060 - L1PA4 LINE L1 -3304 2851 1 225 258 296 9 chr1 5068308 5068420 -237595933 - MIR SINE MIR -113 149 14 239 364 0 0 chr1 5068503 5068580 -237595773 + MIR SINE MIR 71 147 -61 569 233 0 6 chr1 5069355 5069535 -237594818 + CT-rich Low_complexity Low_complexity 2 180 0 332 255 59 10 chr1 5071001 5071103 -237593250 - MIR SINE MIR -72 190 84 2034 176 50 31 chr1 5071191 5071612 -237592741 + MLT1C LTR MaLR 2 430 -37 438 173 27 13 chr1 5072520 5072670 -237591683 + (CA)n Simple_repeat Simple_repeat 2 153 0 192 200 0 0 chr1 5073938 5073978 -237590375 + CT-rich Low_complexity Low_complexity 1 40 0 872 235 38 17 chr1 5075314 5075542 -237588811 - MLT1A1 LTR MaLR 0 365 133 1822 175 71 76 chr1 5075542 5075922 -237588431 - MSTB1 LTR MaLR 0 432 53 7210 58 0 2 chr1 5075922 5077152 -237587201 - L1PA6 LINE L1 0 6154 4923 1822 175 71 76 chr1 5077152 5077205 -237587148 - MSTB1 LTR MaLR -379 53 1 837 131 15 7 chr1 5077205 5077341 -237587012 - MLT1A1 LTR MaLR -225 140 4 2406 113 34 6 chr1 5078513 5078866 -237585487 + THE1B LTR MaLR 1 363 -1 2471 129 60 27 chr1 5079456 5079968 -237584385 + MLT2A2 LTR ERVL 3 554 0 581 320 41 5 chr1 5081417 5081614 -237582739 + MIR SINE MIR 23 226 -36 21 36 0 0 chr1 5081662 5081690 -237582663 + AT_rich Low_complexity Low_complexity 1 28 0 350 269 77 47 chr1 5083101 5083409 -237580944 + L1MC/D LINE L1 5290 5597 -899 263 388 13 40 chr1 5083494 5083646 -237580707 - MIR SINE MIR -81 181 34 1863 243 67 47 chr1 5083848 5084968 -237579385 + HAL1 LINE L1 25 1200 -1307 1027 195 25 66 chr1 5085044 5085285 -237579068 - MIR SINE MIR -29 233 3 1679 244 69 103 chr1 5085311 5086345 -237578008 + HAL1 LINE L1 1280 2275 -232 2016 125 14 0 chr1 5086345 5086642 -237577711 + AluSg SINE Alu 1 301 -9 1679 244 69 103 chr1 5086642 5086714 -237577639 + HAL1 LINE L1 2275 2348 -159 410 92 0 0 chr1 5087190 5087255 -237577098 + L1PA7 LINE L1 6090 6154 0 324 175 12 12 chr1 5087271 5087351 -237577002 + HAL1 LINE L1 2316 2395 -112 5632 105 8 5 chr1 5087418 5088216 -237576137 - L1PA13 LINE L1 -2 6161 5362 1291 184 23 13 chr1 5088216 5088525 -237575828 + L1P LINE L1 3064 3375 -2771 236 246 18 0 chr1 5088517 5088574 -237575779 + HAL1 LINE L1 2440 2497 -10 * 233 282 163 19 chr1 5088606 5088815 -237575538 + L1ME4a LINE L1 5815 6053 -68 1989 161 33 41 chr1 5089319 5089686 -237574667 - THE1B LTR MaLR 0 364 1 680 299 30 5 chr1 5089964 5090165 -237574188 - MER63A DNA MER1_type -4 206 1 234 264 42 14 chr1 5090979 5091051 -237573302 - L2 LINE L2 -5 3308 3235 217 243 70 87 chr1 5091145 5091330 -237573023 + L2 LINE L2 2833 3014 -299 1788 197 8 31 chr1 5092010 5092366 -237571987 - MSTD LTR MaLR -48 348 1 1772 246 59 17 chr1 5092375 5092952 -237571401 + L1ME2 LINE L1 5318 5918 -246 394 294 92 20 chr1 5093076 5093133 -237571220 + MLT1H LTR MaLR 23 74 -335 552 113 0 0 chr1 5093133 5093213 -237571140 - MADE1 DNA Mariner 0 80 1 394 294 92 20 chr1 5093213 5093410 -237570943 + MLT1H LTR MaLR 74 269 -140 309 308 77 8 chr1 5093447 5093577 -237570776 + MLT1H LTR MaLR 411 549 0 1988 118 16 3 chr1 5094112 5094418 -237569935 + AluY SINE Alu 2 311 0 2030 181 20 45 chr1 5094547 5094999 -237569354 + L1MB3 LINE L1 5740 6179 -4 2073 110 10 0 chr1 5095031 5095323 -237569030 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr1 5096383 5096405 -237567948 + (CA)n Simple_repeat Simple_repeat 2 23 0 1812 182 20 47 chr1 5096968 5097157 -237567196 + MLT1B LTR MaLR 1 194 -196 2055 121 0 0 chr1 5097157 5097454 -237566899 + AluSg1 SINE Alu 1 297 -12 1812 182 20 47 chr1 5097454 5097665 -237566688 + MLT1B LTR MaLR 194 390 0 1902 146 58 28 chr1 5098663 5099027 -237565326 + THE1C LTR MaLR 1 375 0 1682 200 104 0 chr1 5100315 5100660 -237563693 - MLT1B LTR MaLR 0 390 10 353 303 35 21 chr1 5100792 5100937 -237563416 + L2 LINE L2 3126 3272 0 2154 142 27 33 chr1 5101929 5102295 -237562058 - THE1B LTR MaLR 0 364 1 11890 95 6 1 chr1 5102295 5103867 -237560486 - THE1B-int LTR MaLR 0 1580 1 2129 144 31 11 chr1 5103867 5104222 -237560131 - THE1B LTR MaLR 0 364 3 336 282 162 7 chr1 5104227 5104369 -237559984 + MIR SINE MIR 85 248 -14 25 0 0 0 chr1 5105050 5105075 -237559278 + AT_rich Low_complexity Low_complexity 1 25 0 1251 58 0 0 chr1 5105099 5105253 -237559100 - L1PA8 LINE L1 -6 6166 6013 260 308 47 18 chr1 5105720 5105889 -237558464 - L1MEd LINE L1 -4863 1256 1083 26 0 0 0 chr1 5106080 5106106 -237558247 + AT_rich Low_complexity Low_complexity 1 26 0 211 105 0 88 chr1 5106457 5106514 -237557839 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2455 125 22 5 chr1 5106947 5107316 -237557037 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr1 5107707 5107732 -237556621 + AT_rich Low_complexity Low_complexity 1 25 0 2219 108 3 0 chr1 5107760 5108067 -237556286 + AluSc SINE Alu 1 308 -1 2022 191 3 6 chr1 5108092 5108448 -237555905 - MLT1A1 LTR MaLR -7 358 4 450 261 48 107 chr1 5110030 5110209 -237554144 - MIR SINE MIR -3 259 100 2171 116 0 0 chr1 5110209 5110512 -237553841 + AluSg SINE Alu 1 303 -7 450 261 48 107 chr1 5110512 5110604 -237553749 - MIR SINE MIR -162 100 4 1434 254 144 39 chr1 5111159 5111824 -237552529 - MER21B LTR ERV1 -125 738 4 1210 200 57 83 chr1 5112721 5113071 -237551282 - MLT1A2 LTR MaLR -33 341 1 1966 129 3 3 chr1 5113352 5113654 -237550699 - AluSx SINE Alu -10 302 1 2033 202 57 9 chr1 5114756 5115196 -237549157 - MLT1C LTR MaLR -6 461 1 388 316 111 22 chr1 5115924 5116359 -237547994 + L1ME4a LINE L1 5442 5918 -203 303 249 32 56 chr1 5116367 5116599 -237547754 + HAL1b LINE L1 1190 1307 -41 681 199 0 0 chr1 5116977 5117153 -237547200 + (TG)n Simple_repeat Simple_repeat 1 176 0 21 0 0 0 chr1 5117283 5117304 -237547049 + AT_rich Low_complexity Low_complexity 1 21 0 238 216 0 20 chr1 5117779 5117830 -237546523 + (TG)n Simple_repeat Simple_repeat 1 50 0 1474 242 59 47 chr1 5118815 5119085 -237545268 + MLT1D LTR MaLR 2 267 -238 2385 121 8 22 chr1 5119085 5119450 -237544903 - THE1B LTR MaLR -4 360 1 11474 100 20 4 chr1 5119450 5121005 -237543348 - THE1B-int LTR MaLR 0 1580 1 2343 137 8 14 chr1 5121005 5121371 -237542982 - THE1B LTR MaLR 0 364 1 1474 242 59 47 chr1 5121371 5121593 -237542760 + MLT1D LTR MaLR 266 502 -3 202 143 0 24 chr1 5122780 5122822 -237541531 + (TTAA)n Simple_repeat Simple_repeat 4 44 0 1813 302 3 2 chr1 5123168 5123757 -237540596 + HERVK13 LTR ERVK 1460 2049 -6067 2327 138 24 8 chr1 5123823 5124192 -237540161 - THE1C LTR MaLR 0 375 1 2945 207 22 30 chr1 5125269 5125442 -237538911 + MER77 LTR ERV1 1 174 -489 1633 202 159 43 chr1 5125442 5125908 -237538445 - MLT2B1 LTR ERVL 0 520 1 2945 207 22 30 chr1 5125908 5126265 -237538088 + MER77 LTR ERV1 174 577 -86 2336 100 21 0 chr1 5126265 5126594 -237537759 - L1PA13 LINE L1 -15 6148 5813 2945 207 22 30 chr1 5126594 5126675 -237537678 + MER77 LTR ERV1 577 657 -6 342 300 22 0 chr1 5127460 5127550 -237536803 - MER117 DNA MER1_type 0 197 106 1917 176 29 3 chr1 5127902 5128282 -237536071 + MLT1B LTR MaLR 1 390 0 1749 169 76 10 chr1 5130499 5130863 -237533490 - MLT1B LTR MaLR -1 466 1 2345 88 3 0 chr1 5131367 5131662 -237532691 - AluSq SINE Alu -12 301 6 25 0 0 0 chr1 5131670 5131695 -237532658 + AT_rich Low_complexity Low_complexity 1 25 0 2476 196 9 30 chr1 5131696 5132222 -237532131 - MLT2B2 LTR ERVL 0 515 1 279 0 0 0 chr1 5133130 5133161 -237531192 + (TA)n Simple_repeat Simple_repeat 2 32 0 2391 228 61 32 chr1 5134642 5134708 -237529645 - L1MB7 LINE L1 0 6183 6120 1984 100 3 57 chr1 5134708 5135033 -237529320 + AluSx SINE Alu 1 309 0 2238 90 0 7 chr1 5135033 5135322 -237529031 + AluSg SINE Alu 23 309 -1 2391 228 61 32 chr1 5135322 5135992 -237528361 - L1MB7 LINE L1 -62 6121 5444 237 65 0 0 chr1 5138721 5138752 -237525601 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 688 82 0 45 chr1 5139030 5139140 -237525213 - AluSp/q SINE Alu -5 308 204 251 212 0 15 chr1 5139517 5139583 -237524770 + CT-rich Low_complexity Low_complexity 4 68 0 305 269 65 11 chr1 5139623 5139716 -237524637 - MIR SINE MIR -151 111 14 219 316 77 31 chr1 5140862 5141058 -237523295 - L2 LINE L2 -261 3011 2807 197 338 0 15 chr1 5142347 5142415 -237521938 - MIR SINE MIR -171 91 25 2110 117 158 61 chr1 5143800 5144243 -237520110 - LTR19A LTR ERV1 0 486 1 592 25 37 0 chr1 5144773 5144854 -237519499 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 1749 183 0 16 chr1 5145273 5145590 -237518763 - AluJo SINE Alu 0 312 1 4838 127 10 32 chr1 5146413 5147190 -237517163 + MER4D LTR ERV1 4 763 -140 2003 160 3 0 chr1 5147191 5147491 -237516862 + AluSq SINE Alu 1 301 -12 690 125 10 0 chr1 5147495 5147599 -237516754 + AluSg/x SINE Alu 127 231 -81 207 0 0 0 chr1 5147620 5147643 -237516710 + (TG)n Simple_repeat Simple_repeat 2 24 0 253 302 0 0 chr1 5147645 5147731 -237516622 - L1MC4 LINE L1 -1339 6703 6618 1319 112 31 40 chr1 5147731 5147955 -237516398 + MER50 LTR ERV1 207 428 -306 231 109 65 0 chr1 5147946 5147992 -237516361 - LTR66 LTR ERVL -161 449 401 * 762 175 7 35 chr1 5147979 5148095 -237516258 + MER4D LTR ERV1 758 871 -32 2405 162 25 23 chr1 5148095 5148528 -237515825 - MER57B LTR ERV1 0 434 1 762 175 7 35 chr1 5148528 5148554 -237515799 + MER4D LTR ERV1 871 896 -7 4261 133 18 32 chr1 5148732 5149448 -237514905 - MER50 LTR ERV1 -28 706 1 540 250 76 117 chr1 5150512 5151077 -237513276 - LTR48B LTR ERV1 0 542 1 277 306 8 8 chr1 5151079 5151203 -237513150 - L1ME3 LINE L1 -27 6143 6020 3568 112 21 41 chr1 5151229 5151810 -237512543 + LTR24B LTR ERV1 1 569 -7 1589 243 133 39 chr1 5151892 5152110 -237512243 - L1ME3 LINE L1 -208 5962 5766 2491 163 74 0 chr1 5152110 5152545 -237511808 + LTR24 LTR ERV1 1 467 0 1589 243 133 39 chr1 5152545 5152870 -237511483 - L1ME3 LINE L1 -404 5766 5340 2627 130 36 25 chr1 5152870 5153346 -237511007 + MER31A LTR ERV1 5 485 0 1589 243 133 39 chr1 5153346 5153431 -237510922 - L1ME3 LINE L1 -830 5340 5264 1959 190 54 30 chr1 5153444 5153987 -237510366 - MLT2A2 LTR ERVL 0 554 1 5348 81 3 1 chr1 5154141 5154822 -237509531 - LTR8 LTR ERV1 -9 682 1 1666 171 13 17 chr1 5155134 5155432 -237508921 + AluJo SINE Alu 1 297 -15 7673 243 77 43 chr1 5155437 5157866 -237506487 - L1ME1 LINE L1 -5 6230 3885 360 0 0 0 chr1 5157866 5157906 -237506447 + (TG)n Simple_repeat Simple_repeat 2 41 0 7673 243 77 43 chr1 5157906 5159317 -237505036 - L1ME1 LINE L1 -2350 3885 2524 721 241 39 15 chr1 5159317 5159520 -237504833 - MER63A DNA MER1_type -1 209 2 180 0 0 0 chr1 5159521 5159541 -237504812 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7673 243 77 43 chr1 5159541 5159665 -237504688 - L1ME1 LINE L1 -3710 2525 2179 6192 196 31 5 chr1 5159674 5161698 -237502655 - L1MC1 LINE L1 -5 6608 4519 231 36 0 0 chr1 5161698 5161726 -237502627 + (TG)n Simple_repeat Simple_repeat 1 28 0 6192 196 31 5 chr1 5161726 5161845 -237502508 - L1MC1 LINE L1 -2094 4519 4405 1098 183 139 40 chr1 5161846 5162147 -237502206 - L1MC1 LINE L1 -6038 388 58 2855 287 79 45 chr1 5162165 5162517 -237501836 - L1ME1 LINE L1 -4216 2180 1841 2691 93 50 24 chr1 5162517 5162934 -237501419 - MSTA LTR MaLR 0 428 1 2855 287 79 45 chr1 5162934 5164058 -237500295 - L1ME1 LINE L1 -4555 1841 613 1921 168 26 0 chr1 5164058 5164362 -237499991 - AluJo SINE Alu 0 312 1 2855 287 79 45 chr1 5164362 5164928 -237499425 - L1ME1 LINE L1 -5783 613 68 181 328 135 29 chr1 5165058 5165302 -237499051 + L2 LINE L2 2329 2598 -716 2463 168 18 18 chr1 5165609 5166043 -237498310 - Tigger2a DNA MER2_type 0 434 1 242 233 0 122 chr1 5166217 5166307 -237498046 + L2 LINE L2 3235 3313 0 498 359 113 0 chr1 5166381 5166699 -237497654 - L3 LINE CR1 -3 1574 1221 186 349 0 12 chr1 5166753 5166839 -237497514 - MIR SINE MIR -70 192 108 443 244 83 24 chr1 5166870 5167102 -237497251 + MLT1F LTR MaLR 311 537 -5 1219 177 89 86 chr1 5168611 5169006 -237495347 - MSTD LTR MaLR 0 396 1 540 307 12 0 chr1 5171187 5171350 -237493003 + MIR SINE MIR 80 244 -18 213 315 14 0 chr1 5171603 5171676 -237492677 + GA-rich Low_complexity Low_complexity 2 75 0 2213 103 57 14 chr1 5172187 5172536 -237491817 - THE1B LTR MaLR 0 364 1 1561 173 62 64 chr1 5174953 5175420 -237488933 + MLT1C LTR MaLR 2 467 0 687 277 40 0 chr1 5175594 5175796 -237488557 - MER20 DNA MER1_type -9 210 1 1775 174 7 3 chr1 5177083 5177376 -237486977 + AluJo SINE Alu 1 294 -18 778 191 91 0 chr1 5177873 5178072 -237486281 - MER20 DNA MER1_type -2 217 1 204 184 0 0 chr1 5178665 5178714 -237485639 + T-rich Low_complexity Low_complexity 1 49 0 360 0 0 0 chr1 5180258 5180298 -237484055 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 261 0 0 0 chr1 5181398 5181427 -237482926 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 277 308 0 34 chr1 5183827 5183944 -237480409 + CT-rich Low_complexity Low_complexity 4 116 0 388 322 0 0 chr1 5187650 5187740 -237476613 + L1MC4 LINE L1 6614 6703 -1339 * 467 223 46 9 chr1 5187666 5187777 -237476576 - L1MC4 LINE L1 -1337 6985 1978 217 246 15 31 chr1 5187953 5188018 -237476335 + (TG)n Simple_repeat Simple_repeat 1 64 0 213 214 0 0 chr1 5188163 5188205 -237476148 + (TATG)n Simple_repeat Simple_repeat 4 45 0 241 26 53 0 chr1 5188611 5188649 -237475704 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 348 273 45 30 chr1 5189745 5189877 -237474476 + MER5A DNA MER1_type 24 157 -32 269 323 31 23 chr1 5189774 5189904 -237474449 - MER5A DNA MER1_type -41 148 18 * 1535 124 22 0 chr1 5190368 5190593 -237473760 + AluSg/x SINE Alu 81 310 -2 924 226 39 42 chr1 5190819 5191057 -237473296 + L1MB3 LINE L1 5899 6137 -46 2333 81 44 0 chr1 5191057 5191352 -237473001 - AluSx SINE Alu -4 308 1 924 226 39 42 chr1 5191352 5191396 -237472957 + L1MB3 LINE L1 6137 6180 -3 725 77 0 0 chr1 5191787 5191891 -237472462 + AluY SINE Alu 208 311 0 566 51 13 0 chr1 5192565 5192643 -237471710 + (GA)n Simple_repeat Simple_repeat 2 80 0 218 104 0 21 chr1 5193148 5193196 -237471157 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 354 226 38 19 chr1 5194750 5194856 -237469497 + MIR SINE MIR 33 140 -122 270 211 3 0 chr1 5194944 5195010 -237469343 + MIR SINE MIR 86 153 -55 26 50 0 0 chr1 5199110 5199150 -237465203 + AT_rich Low_complexity Low_complexity 1 40 0 941 163 6 0 chr1 5203476 5203654 -237460699 + (ATG)n Simple_repeat Simple_repeat 1 179 0 749 206 9 0 chr1 5203666 5204008 -237460345 + (ATG)n Simple_repeat Simple_repeat 1 345 0 1078 211 9 5 chr1 5204893 5205106 -237459247 - MER58A DNA MER1_type -4 220 7 1132 185 18 21 chr1 5206991 5207274 -237457079 - MLT2B2 LTR ERVL 0 515 277 578 185 28 17 chr1 5207289 5207467 -237456886 + GA-rich Low_complexity Low_complexity 1 180 0 1299 188 4 4 chr1 5207504 5207738 -237456615 - MLT2B2 LTR ERVL -281 234 1 466 237 30 0 chr1 5207981 5208112 -237456241 + MER20 DNA MER1_type 37 171 -48 254 273 231 0 chr1 5208334 5208455 -237455898 - MIR SINE MIR -33 229 81 1573 236 102 18 chr1 5208463 5208916 -237455437 - MER77 LTR ERV1 -7 598 108 843 91 0 0 chr1 5209070 5209191 -237455162 + HERVL-A2 LTR ERVL 5534 5654 0 3155 96 7 20 chr1 5209191 5209650 -237454703 + MLT2A2 LTR ERVL 1 453 0 255 224 75 0 chr1 5210246 5210313 -237454040 + MER58A DNA MER1_type 153 224 0 654 211 0 0 chr1 5210841 5211021 -237453332 + (CA)n Simple_repeat Simple_repeat 1 180 0 2189 99 24 44 chr1 5212512 5212895 -237451458 + THE1C LTR MaLR 1 375 0 2224 135 13 21 chr1 5212983 5213361 -237450992 - THE1C LTR MaLR 0 375 1 366 282 13 39 chr1 5213396 5213552 -237450801 - L2 LINE L2 -1 3312 3161 259 280 8 51 chr1 5213769 5213887 -237450466 + MLT1H LTR MaLR 241 353 -196 285 200 158 42 chr1 5214426 5214521 -237449832 - MER103 DNA DNA -44 122 17 2258 153 10 72 chr1 5215080 5215597 -237448756 + MER31A LTR ERV1 1 485 0 1109 261 59 0 chr1 5216829 5217151 -237447202 - MER58B DNA MER1_type 0 341 1 257 272 60 85 chr1 5217169 5217343 -237447010 + L1MCc LINE L1 1281 1449 -4974 2379 94 3 0 chr1 5217343 5217641 -237446712 + AluSp SINE Alu 1 299 -14 257 272 60 85 chr1 5217641 5217701 -237446652 + L1MCc LINE L1 1449 1509 -4914 24 77 0 0 chr1 5217722 5217774 -237446579 + AT_rich Low_complexity Low_complexity 1 52 0 189 247 54 86 chr1 5217808 5217901 -237446452 + MIR3 SINE MIR 71 160 -48 358 194 10 10 chr1 5218983 5219081 -237445272 + CT-rich Low_complexity Low_complexity 3 100 0 275 299 103 26 chr1 5219606 5219723 -237444630 + L2 LINE L2 3147 3272 0 258 250 0 0 chr1 5220962 5221050 -237443303 + (CA)n Simple_repeat Simple_repeat 1 88 0 297 222 0 0 chr1 5221161 5221260 -237443093 + (CA)n Simple_repeat Simple_repeat 2 100 0 278 344 0 6 chr1 5221313 5221470 -237442883 + (CA)n Simple_repeat Simple_repeat 2 157 0 215 379 35 0 chr1 5221841 5221957 -237442396 - MIR SINE MIR -62 146 27 672 245 38 52 chr1 5222225 5222437 -237441916 - MLT1A1 LTR MaLR -31 334 126 2344 106 0 0 chr1 5222437 5222749 -237441604 - AluSx SINE Alu 0 312 1 2110 116 7 13 chr1 5223197 5223507 -237440846 - AluSx SINE Alu -4 308 1 218 369 131 6 chr1 5223522 5223698 -237440655 - L2 LINE L2 -2071 1243 1046 1126 241 55 40 chr1 5224772 5225225 -237439128 + MLT1C LTR MaLR 7 466 -1 263 257 28 46 chr1 5225233 5225342 -237439011 - MIR SINE MIR -110 152 46 226 328 16 8 chr1 5226399 5226521 -237437832 + (TG)n Simple_repeat Simple_repeat 1 123 0 312 188 0 0 chr1 5226561 5226625 -237437728 + (TG)n Simple_repeat Simple_repeat 1 64 0 222 91 0 0 chr1 5227643 5227676 -237436677 + (TGGA)n Simple_repeat Simple_repeat 2 34 0 2681 233 106 6 chr1 5228705 5229611 -237434742 - L1MC4 LINE L1 -374 7668 6568 886 251 171 6 chr1 5229650 5230001 -237434352 + MLT1C LTR MaLR 53 461 -6 2834 186 16 27 chr1 5230351 5230409 -237433944 - L1MB3 LINE L1 -1 6182 6125 2483 46 0 3 chr1 5230409 5230711 -237433642 - AluY SINE Alu -10 301 1 2834 186 16 27 chr1 5230711 5231201 -237433152 - L1MB3 LINE L1 -58 6125 5640 217 200 0 33 chr1 5231449 5231509 -237432844 + A-rich Low_complexity Low_complexity 2 59 0 315 363 131 2 chr1 5232347 5232758 -237431595 + L2 LINE L2 2511 2974 -340 1778 156 3 29 chr1 5233288 5233603 -237430750 - AluJo SINE Alu -5 307 1 243 338 14 50 chr1 5234487 5234626 -237429727 - L2 LINE L2 0 3313 3180 555 271 90 6 chr1 5235052 5235229 -237429124 - MIR SINE MIR -11 251 60 472 269 66 28 chr1 5236733 5236915 -237427438 + MIR SINE MIR 47 235 -27 288 314 74 16 chr1 5237658 5237779 -237426574 + L2 LINE L2 3145 3272 0 2342 106 0 0 chr1 5239834 5240146 -237424207 + AluSx SINE Alu 1 312 0 23 0 0 0 chr1 5240157 5240180 -237424173 + AT_rich Low_complexity Low_complexity 1 23 0 396 223 86 22 chr1 5241255 5241394 -237422959 + MLT1C LTR MaLR 7 154 -313 1200 211 60 3 chr1 5241403 5241701 -237422652 + MLT1B LTR MaLR 5 319 -71 687 241 162 98 chr1 5243064 5243607 -237420746 - MLT1E LTR MaLR -5 588 11 260 225 75 83 chr1 5244465 5244585 -237419768 - MER5A DNA MER1_type -27 162 44 * 296 258 65 21 chr1 5244495 5244588 -237419765 + MER5A DNA MER1_type 64 160 -29 1805 192 41 0 chr1 5245212 5245586 -237418767 + MLT1B LTR MaLR 1 467 0 185 297 187 65 chr1 5247290 5248107 -237416246 + L2 LINE L2 1575 2491 -823 623 255 176 5 chr1 5248398 5248699 -237415654 + MLT1C LTR MaLR 129 495 -10 558 314 73 55 chr1 5248969 5249475 -237414878 + MER20B DNA MER1_type 262 776 -7 210 193 53 18 chr1 5249958 5250015 -237414338 + MIR SINE MIR 20 78 -130 191 406 41 16 chr1 5250585 5250708 -237413645 - MIR SINE MIR -59 203 78 232 326 33 22 chr1 5251505 5251597 -237412756 - MIR3 SINE MIR -21 187 95 2269 105 7 0 chr1 5252434 5252738 -237411615 + AluSc SINE Alu 1 306 -3 509 185 8 0 chr1 5254413 5254532 -237409821 + (CAT)n Simple_repeat Simple_repeat 1 120 0 897 168 0 0 chr1 5254544 5254723 -237409630 + (CAT)n Simple_repeat Simple_repeat 1 179 0 495 325 123 5 chr1 5254736 5254939 -237409414 - MIR SINE MIR 0 262 36 363 366 45 18 chr1 5255413 5255515 -237408838 - MIR SINE MIR 0 262 164 2071 118 10 3 chr1 5255515 5255811 -237408542 - AluSp SINE Alu -15 298 1 363 366 45 18 chr1 5255811 5255932 -237408421 - MIR SINE MIR -98 164 33 265 395 8 8 chr1 5256194 5256318 -237408035 - L3b LINE CR1 -132 1451 1328 206 331 48 28 chr1 5257939 5258084 -237406269 - L3b LINE CR1 -192 1391 1244 216 111 0 0 chr1 5258659 5258695 -237405658 + (TGG)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr1 5259157 5259186 -237405167 + GC_rich Low_complexity Low_complexity 1 29 0 361 308 0 7 chr1 5260678 5260821 -237403532 + (TG)n Simple_repeat Simple_repeat 1 142 0 320 262 6 16 chr1 5260856 5261177 -237403176 + (TG)n Simple_repeat Simple_repeat 1 318 0 343 314 6 6 chr1 5261772 5261944 -237402409 + (CACAC)n Simple_repeat Simple_repeat 5 176 0 2348 83 0 0 chr1 5262949 5263251 -237401102 + AluSc SINE Alu 1 302 -7 1881 271 78 13 chr1 5263259 5263937 -237400416 + L1MB7 LINE L1 5445 6166 -18 1470 279 74 19 chr1 5265154 5265774 -237398579 - L1MC3 LINE L1 -3 7782 7129 306 0 0 0 chr1 5265785 5265819 -237398534 + (A)n Simple_repeat Simple_repeat 1 34 0 1539 15 0 0 chr1 5265838 5266039 -237398314 - L1PA3 LINE L1 -1016 5130 4930 7706 30 1 0 chr1 5266039 5267057 -237397296 + L1PA3 LINE L1 5136 6154 -1 718 174 71 0 chr1 5269490 5269645 -237394708 + MER20 DNA MER1_type 6 171 -48 227 373 25 25 chr1 5269795 5269913 -237394440 + MIR SINE MIR 21 138 -70 342 269 76 70 chr1 5270740 5270911 -237393442 + MER5B DNA MER1_type 2 173 -5 356 356 34 7 chr1 5271276 5271425 -237392928 - MIR SINE MIR 0 262 110 195 286 50 67 chr1 5272556 5272675 -237391678 + L3 LINE CR1 1456 1572 -5 255 385 15 0 chr1 5273486 5273621 -237390732 - MIR SINE MIR -90 172 36 357 304 62 46 chr1 5273751 5273945 -237390408 - L3 LINE CR1 -107 1470 1274 281 294 22 22 chr1 5273947 5274083 -237390270 + (CA)n Simple_repeat Simple_repeat 1 136 0 258 268 12 6 chr1 5274123 5274291 -237390062 + (CA)n Simple_repeat Simple_repeat 2 170 0 296 322 6 40 chr1 5274293 5274470 -237389883 + (CATA)n Simple_repeat Simple_repeat 4 174 0 * 402 321 18 6 chr1 5274376 5274541 -237389812 + (CA)n Simple_repeat Simple_repeat 2 168 0 1546 174 87 3 chr1 5275328 5275673 -237388680 + MLT1B LTR MaLR 1 374 -16 474 189 41 0 chr1 5276069 5276191 -237388162 - MER20 DNA MER1_type -88 131 5 285 312 24 16 chr1 5276671 5276796 -237387557 + L2 LINE L2 3147 3272 0 1211 241 90 6 chr1 5277240 5277605 -237386748 + MSTD LTR MaLR 1 396 0 312 326 137 0 chr1 5278409 5278584 -237385769 - L2 LINE L2 -107 3165 2967 207 205 0 0 chr1 5279015 5279054 -237385299 + MIR SINE MIR 111 149 -113 293 303 151 7 chr1 5280481 5280633 -237383720 + MIR SINE MIR 81 254 -8 232 279 139 0 chr1 5282283 5282362 -237381991 + MIR SINE MIR 111 200 -62 2385 88 3 0 chr1 5282417 5282724 -237381629 - AluSx SINE Alu -4 308 1 273 119 0 0 chr1 5283381 5283423 -237380930 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 191 310 127 28 chr1 5284687 5284835 -237379518 - MIR SINE MIR -64 144 33 487 221 26 19 chr1 5284864 5285004 -237379349 + MLT1C LTR MaLR 358 467 0 197 309 161 0 chr1 5286446 5286527 -237377826 + MIR SINE MIR 50 143 -119 215 243 0 43 chr1 5287172 5287242 -237377111 + CT-rich Low_complexity Low_complexity 1 67 0 621 231 34 8 chr1 5287731 5287915 -237376438 + MER5A DNA MER1_type 1 171 -7 533 333 53 0 chr1 5287938 5288127 -237376226 - MIR SINE MIR -28 234 36 750 198 0 0 chr1 5288283 5288460 -237375893 + (CAT)n Simple_repeat Simple_repeat 3 179 0 294 194 0 0 chr1 5288480 5288547 -237375806 + (CAT)n Simple_repeat Simple_repeat 2 68 0 505 246 127 0 chr1 5289130 5289272 -237375081 + MIR SINE MIR 28 187 -75 290 277 125 23 chr1 5289329 5289458 -237374895 - MIR SINE MIR -56 152 17 1741 186 76 14 chr1 5290749 5290886 -237373467 + MLT1C LTR MaLR 6 133 -334 2054 215 50 45 chr1 5290886 5291362 -237372991 + MLT2B1 LTR ERVL 1 482 -38 396 0 0 0 chr1 5291362 5291406 -237372947 + (CA)n Simple_repeat Simple_repeat 2 45 0 2054 215 50 45 chr1 5291406 5291446 -237372907 + MLT2B1 LTR ERVL 482 520 0 1741 186 76 14 chr1 5291446 5291743 -237372610 + MLT1C LTR MaLR 133 467 0 189 0 0 0 chr1 5291812 5291833 -237372520 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 462 340 82 22 chr1 5291837 5292069 -237372284 - L2 LINE L2 -14 3299 3054 422 267 80 40 chr1 5292212 5292388 -237371965 + MIR SINE MIR 80 262 0 761 219 78 10 chr1 5292419 5292624 -237371729 + MLT1E LTR MaLR 2 220 -373 946 200 73 5 chr1 5292664 5292884 -237371469 + MLT1E LTR MaLR 305 539 -54 2268 90 0 3 chr1 5294041 5294340 -237370013 - AluSx SINE Alu -14 298 1 1645 268 47 21 chr1 5295482 5296016 -237368337 + MER77 LTR ERV1 54 601 -4 530 216 196 0 chr1 5296693 5296846 -237367507 - MER58A DNA MER1_type 0 224 42 245 95 0 24 chr1 5296896 5296938 -237367415 - MER58A DNA MER1_type -25 82 42 216 0 0 0 chr1 5297140 5297164 -237367189 + (T)n Simple_repeat Simple_repeat 1 24 0 366 215 103 0 chr1 5297177 5297284 -237367069 - MER53 DNA DNA -71 118 1 239 321 0 12 chr1 5297780 5297864 -237366489 + GA-rich Low_complexity Low_complexity 2 84 0 1007 220 31 101 chr1 5297923 5298445 -237365908 - MLT1E2 LTR MaLR 0 626 61 2175 116 0 0 chr1 5299819 5300120 -237364233 - AluSx SINE Alu -11 301 1 340 250 103 17 chr1 5301142 5301258 -237363095 - MIR SINE MIR -115 147 22 2377 206 34 9 chr1 5301272 5301545 -237362808 + L1MB5 LINE L1 5637 5902 -272 2166 107 55 30 chr1 5301545 5301908 -237362445 + THE1C LTR MaLR 1 372 -3 2377 206 34 9 chr1 5301908 5302158 -237362195 + L1MB5 LINE L1 5902 6173 -1 403 270 56 27 chr1 5302586 5302744 -237361609 + MIR SINE MIR 51 212 -35 372 88 0 0 chr1 5302827 5302884 -237361469 + (CA)n Simple_repeat Simple_repeat 2 58 0 1999 134 3 0 chr1 5302982 5303274 -237361079 - AluSx SINE Alu -19 293 1 2201 134 24 0 chr1 5303477 5303805 -237360548 + MER1B DNA MER1_type 2 337 0 183 358 154 0 chr1 5305350 5305473 -237358880 + L2 LINE L2 3167 3308 -5 695 254 100 12 chr1 5306979 5307219 -237357134 + MIR SINE MIR 1 261 -1 793 194 0 0 chr1 5307928 5308062 -237356291 + AluJo SINE Alu 1 134 -178 1034 311 50 10 chr1 5308624 5309122 -237355231 + L1MB7 LINE L1 5651 6168 -16 273 29 0 0 chr1 5309126 5309160 -237355193 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr1 5309292 5309316 -237355037 + AT_rich Low_complexity Low_complexity 1 24 0 734 257 39 6 chr1 5309646 5309825 -237354528 + MIR SINE MIR 8 192 -70 1371 176 30 62 chr1 5310646 5310965 -237353388 - L1MD1 LINE L1 0 6242 5935 2541 168 8 70 chr1 5310965 5311483 -237352870 - MER66B LTR ERV1 0 486 1 1371 176 30 62 chr1 5311483 5311533 -237352820 - L1MD1 LINE L1 -307 5935 5885 198 0 0 0 chr1 5313473 5313495 -237350858 + (CCCCCA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr1 5315061 5315083 -237349270 + GC_rich Low_complexity Low_complexity 1 22 0 49 66 0 0 chr1 5315349 5315440 -237348913 + GC_rich Low_complexity Low_complexity 1 91 0 28 29 0 0 chr1 5315888 5315923 -237348430 + GC_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr1 5315936 5315980 -237348373 + GC_rich Low_complexity Low_complexity 1 44 0 27 49 0 0 chr1 5316027 5316068 -237348285 + GC_rich Low_complexity Low_complexity 1 41 0 31 88 0 0 chr1 5316437 5316517 -237347836 + GC_rich Low_complexity Low_complexity 1 80 0 245 241 25 51 chr1 5316528 5316686 -237347667 + C-rich Low_complexity Low_complexity 3 156 0 259 308 28 9 chr1 5318063 5318170 -237346183 + MIR SINE MIR 36 144 -118 1165 253 82 5 chr1 5318583 5319010 -237345343 - Charlie4a DNA MER1_type -24 484 25 1973 122 0 14 chr1 5319287 5319610 -237344743 - AluSx SINE Alu 0 319 1 225 196 0 0 chr1 5319801 5319847 -237344506 + (CA)n Simple_repeat Simple_repeat 2 47 0 1008 268 36 13 chr1 5322516 5322818 -237341535 - MLT1I LTR MaLR -3 406 98 1328 156 0 0 chr1 5323243 5323467 -237340886 + L1MA4 LINE L1 6072 6295 -5 972 182 0 3 chr1 5323504 5324216 -237340137 + (CCA)n Simple_repeat Simple_repeat 1 709 0 220 329 0 0 chr1 5324607 5324677 -237339676 - MIR SINE MIR -52 210 141 823 279 25 102 chr1 5325254 5325773 -237338580 + MLT1J LTR MaLR 25 503 -8 2066 110 7 0 chr1 5325897 5326189 -237338164 + AluSx SINE Alu 1 294 -18 215 102 0 41 chr1 5327047 5327096 -237337257 + (TTTTTG)n Simple_repeat Simple_repeat 1 47 0 310 337 11 0 chr1 5327114 5327209 -237337144 + MIR SINE MIR 54 149 -59 1459 218 40 37 chr1 5328449 5328829 -237335524 - MLT1B LTR MaLR -9 381 1 693 227 71 15 chr1 5328925 5329123 -237335230 + L1MB7 LINE L1 5654 5862 -322 274 211 0 0 chr1 5329123 5329180 -237335173 + Charlie1 DNA MER1_type 2407 2463 -298 1015 206 45 96 chr1 5329243 5329597 -237334756 + L1MB7 LINE L1 5847 6182 -2 1159 208 16 43 chr1 5329598 5329920 -237334433 + Charlie1 DNA MER1_type 2146 2458 -303 22 0 0 0 chr1 5329980 5330002 -237334351 + AT_rich Low_complexity Low_complexity 1 22 0 224 59 29 0 chr1 5330132 5330166 -237334187 + (ATG)n Simple_repeat Simple_repeat 1 35 0 184 340 0 0 chr1 5330229 5330279 -237334074 - MIR SINE MIR -72 190 141 198 71 0 0 chr1 5330515 5330543 -237333810 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 429 260 57 0 chr1 5330599 5330776 -237333577 + L1M4 LINE L1 5086 5272 -874 191 180 60 0 chr1 5330776 5330826 -237333527 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 319 302 0 8 chr1 5330847 5330976 -237333377 + L1M LINE L1 5288 5415 -747 1778 163 13 0 chr1 5331233 5331580 -237332773 + AluJb SINE Alu 1 342 -615 1820 125 29 11 chr1 5331580 5331710 -237332643 + AluSx SINE Alu 6 132 -180 2007 92 32 35 chr1 5331710 5332024 -237332329 + AluSq SINE Alu 1 313 0 1820 125 29 11 chr1 5332024 5332172 -237332181 + AluSx SINE Alu 132 289 -23 1778 163 13 0 chr1 5332172 5332186 -237332167 + AluJb SINE Alu 342 957 0 189 0 0 0 chr1 5333814 5333835 -237330518 + (A)n Simple_repeat Simple_repeat 1 21 0 733 302 41 16 chr1 5334053 5334295 -237330058 + MIR SINE MIR 2 249 -13 261 242 0 16 chr1 5334717 5334779 -237329574 + CT-rich Low_complexity Low_complexity 1 61 0 223 291 0 0 chr1 5335054 5335109 -237329244 + (TGGG)n Simple_repeat Simple_repeat 1 55 0 1956 127 38 0 chr1 5335348 5335639 -237328714 + AluSx SINE Alu 8 309 -3 1617 213 116 16 chr1 5337112 5337553 -237326800 + MER31A LTR ERV1 1 485 0 328 145 51 96 chr1 5337892 5338265 -237326088 + (CTGTG)n Simple_repeat Simple_repeat 1 356 0 407 5 0 135 chr1 5338289 5338474 -237325879 + (TG)n Simple_repeat Simple_repeat 1 160 0 343 136 60 87 chr1 5338533 5338717 -237325636 + (CTGTG)n Simple_repeat Simple_repeat 1 179 0 184 354 41 34 chr1 5338744 5338891 -237325462 - L2 LINE L2 -25 3247 3100 1659 201 93 50 chr1 5338929 5339412 -237324941 + MLT1D LTR MaLR 1 504 -1 777 291 57 10 chr1 5340037 5340333 -237324020 + MER77 LTR ERV1 292 601 -4 225 0 0 0 chr1 5341595 5341620 -237322733 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 903 224 126 32 chr1 5341775 5342261 -237322092 - MLT1E1 LTR MaLR -6 648 1 202 218 55 0 chr1 5342931 5342986 -237321367 - MIR SINE MIR -63 145 88 279 180 0 16 chr1 5342991 5343052 -237321301 - MER53 DNA DNA -2 187 128 265 218 81 11 chr1 5343302 5343389 -237320964 + MER53 DNA DNA 94 186 -3 * 266 219 98 12 chr1 5343319 5343401 -237320952 - MER53 DNA DNA -100 89 1 356 287 43 24 chr1 5344685 5344849 -237319504 + MER63A DNA MER1_type 42 208 -2 209 300 134 69 chr1 5345146 5345423 -237318930 + L2 LINE L2 2978 3272 0 316 319 9 26 chr1 5346236 5346352 -237318001 + MIR SINE MIR 13 126 -136 1906 181 101 15 chr1 5346535 5346933 -237317420 + MER70A LTR ERVL 41 472 0 540 302 123 19 chr1 5347072 5347380 -237316973 + MLT1J2 LTR MaLR 71 410 -40 1847 129 0 7 chr1 5349563 5349842 -237314511 + AluSx SINE Alu 21 297 -15 2385 75 0 3 chr1 5349919 5350224 -237314129 + AluSq SINE Alu 1 304 -9 1925 138 0 0 chr1 5350506 5350834 -237313519 - AluSq SINE Alu 0 328 1 1692 213 75 59 chr1 5351020 5351062 -237313291 - MER114 LTR ERV -13 635 595 1623 184 37 0 chr1 5351062 5351356 -237312997 - AluJb SINE Alu -7 305 1 1692 213 75 59 chr1 5351356 5351937 -237312416 - MER114 LTR ERV -53 595 2 309 274 55 48 chr1 5352089 5352235 -237312118 - L1MCa LINE L1 -4347 2079 1933 2154 108 0 3 chr1 5352263 5352568 -237311785 + AluSq SINE Alu 1 304 -9 354 226 18 113 chr1 5352606 5352774 -237311579 + L1MCa LINE L1 1927 2078 -4348 744 50 0 0 chr1 5352829 5352929 -237311424 + L1PA5 LINE L1 5943 6042 -112 196 51 26 26 chr1 5352936 5352975 -237311378 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 713 259 80 5 chr1 5353105 5353317 -237311036 - L1ME2 LINE L1 0 6164 5937 192 217 17 40 chr1 5354403 5354488 -237309865 + MIR SINE MIR 34 113 -122 263 279 0 0 chr1 5358970 5359038 -237305315 + G-rich Low_complexity Low_complexity 1 68 0 1089 261 37 35 chr1 5360092 5360126 -237304227 + MLT1C LTR MaLR 89 121 -346 1498 179 17 21 chr1 5360126 5360417 -237303936 + AluJo SINE Alu 1 290 -22 1089 261 37 35 chr1 5360417 5360757 -237303596 + MLT1C LTR MaLR 121 464 -3 241 336 0 44 chr1 5360794 5360907 -237303446 + MLT1K LTR MaLR 481 588 0 327 317 122 10 chr1 5361479 5361684 -237302669 - MIR SINE MIR -15 247 20 188 303 84 58 chr1 5361684 5361839 -237302514 - MIR3 SINE MIR -46 162 4 1262 237 121 71 chr1 5362821 5363302 -237301051 + MLT1D LTR MaLR 1 505 0 1921 128 0 21 chr1 5363893 5364218 -237300135 + AluSq SINE Alu 1 319 0 1481 214 54 0 chr1 5364370 5364702 -237299651 + MLT1B LTR MaLR 37 386 -4 1246 313 115 34 chr1 5364839 5365734 -237298619 - L2 LINE L2 -493 2821 1854 4057 163 85 11 chr1 5367089 5367827 -237296526 + MER54B LTR ERVL 1 793 0 220 239 171 11 chr1 5370300 5370388 -237293965 + MIR SINE MIR 31 132 -130 2534 45 0 3 chr1 5371787 5372095 -237292258 - AluY SINE Alu -4 307 1 35 24 0 0 chr1 5372956 5372998 -237291355 + AT_rich Low_complexity Low_complexity 1 42 0 5560 66 8 3 chr1 5373037 5373754 -237290599 - L1PA8 LINE L1 -8 6164 5444 285 246 118 9 chr1 5375579 5375689 -237288664 + L2 LINE L2 3188 3309 -4 211 310 0 0 chr1 5376061 5376119 -237288234 - L2 LINE L2 -17 3296 3239 30 0 0 0 chr1 5376301 5376331 -237288022 + AT_rich Low_complexity Low_complexity 1 30 0 585 203 117 37 chr1 5377312 5377475 -237286878 + MLT1D LTR MaLR 1 176 -329 384 271 102 83 chr1 5378164 5378537 -237285816 - L2 LINE L2 -1 3312 2933 4429 55 62 5 chr1 5379346 5379923 -237284430 + LTR66 LTR ERVL 1 610 0 8302 98 16 11 chr1 5379923 5380807 -237283546 + HERVL66 LTR ERVL 1 894 -3435 2435 58 6 10 chr1 5380807 5381119 -237283234 + AluY SINE Alu 1 311 0 8302 98 16 11 chr1 5381119 5381358 -237282995 + HERVL66 LTR ERVL 894 1130 -3199 2852 75 6 0 chr1 5381358 5381718 -237282635 + HERVL66 LTR ERVL 1436 1797 -2532 * 4876 123 6 20 chr1 5381698 5382412 -237281941 + HERVL66 LTR ERVL 2654 3357 -972 4004 97 7 3 chr1 5382399 5383073 -237281280 + HERVL66 LTR ERVL 3569 4329 0 * 4206 78 40 52 chr1 5383073 5383690 -237280663 + LTR66 LTR ERVL 1 610 0 204 311 62 62 chr1 5386572 5386733 -237277620 - L3 LINE CR1 -7 1570 1410 207 0 0 0 chr1 5386821 5386844 -237277509 + (GA)n Simple_repeat Simple_repeat 1 23 0 1429 173 46 140 chr1 5386975 5387385 -237276968 + MLT2D LTR ERVL 1 365 -49 306 0 0 0 chr1 5387385 5387419 -237276934 + (TA)n Simple_repeat Simple_repeat 2 35 0 1429 173 46 140 chr1 5387419 5387464 -237276889 + MLT2D LTR ERVL 365 413 -1 186 309 154 40 chr1 5387673 5387822 -237276531 + L2 LINE L2 2558 2723 -591 279 0 0 0 chr1 5388184 5388215 -237276138 + (GA)n Simple_repeat Simple_repeat 1 31 0 26 64 0 0 chr1 5388526 5388573 -237275780 + AT_rich Low_complexity Low_complexity 1 47 0 419 276 147 73 chr1 5388618 5388973 -237275380 + LTR67 LTR ERVL 2 382 -175 257 277 53 11 chr1 5389681 5389775 -237274578 + HERVL LTR ERVL 1199 1296 -4358 2163 114 7 0 chr1 5389836 5390142 -237274211 + AluSc SINE Alu 1 308 -1 20469 111 11 14 chr1 5390449 5394411 -237269942 + L1PA8A LINE L1 2183 6131 0 2445 66 0 0 chr1 5395002 5395306 -237269047 + AluY SINE Alu 1 304 -7 641 323 32 18 chr1 5395682 5395967 -237268386 + L2 LINE L2 1852 2140 -1174 388 234 19 0 chr1 5396031 5396138 -237268215 + L2 LINE L2 2005 2113 -1201 440 292 87 0 chr1 5396221 5396382 -237267971 + L2 LINE L2 2106 2280 -1034 904 244 116 0 chr1 5396408 5396683 -237267670 + L2 LINE L2 2235 2541 -773 2050 116 24 0 chr1 5396960 5397254 -237267099 + AluSq SINE Alu 1 301 -12 326 220 207 21 chr1 5397826 5398029 -237266324 + L1MCc LINE L1 1341 1740 -4887 * 1227 243 97 26 chr1 5398009 5398795 -237265558 + L1ME3A LINE L1 5260 6141 -29 662 308 182 12 chr1 5398856 5399496 -237264857 + L2 LINE L2 2556 3309 -4 544 158 30 139 chr1 5399497 5399662 -237264691 - MER103 DNA DNA -12 154 8 215 320 104 50 chr1 5399738 5399960 -237264393 - MIR SINE MIR -16 246 13 845 222 23 54 chr1 5400754 5400975 -237263378 - MER20 DNA MER1_type 0 219 6 191 36 36 0 chr1 5401780 5401808 -237262545 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 771 263 117 4 chr1 5403101 5403375 -237260978 - MER110 LTR ERV1 -14 477 173 2138 159 30 30 chr1 5403389 5403753 -237260600 - THE1B LTR MaLR 0 364 1 274 133 33 67 chr1 5403867 5403927 -237260426 - MER110A LTR ERV1 -330 138 81 878 215 0 6 chr1 5403999 5404157 -237260196 - MIR SINE MIR -85 177 21 193 219 0 0 chr1 5404843 5404884 -237259469 - L2 LINE L2 -556 2758 2718 1793 156 85 16 chr1 5405498 5405863 -237258490 + MLT1B LTR MaLR 1 390 0 2290 78 7 7 chr1 5406504 5406810 -237257543 - AluSq SINE Alu -7 306 1 1927 116 3 10 chr1 5407655 5407947 -237256406 + AluJo SINE Alu 1 290 -22 1788 127 25 38 chr1 5407949 5408265 -237256088 + AluSx SINE Alu 1 312 0 214 209 23 0 chr1 5408470 5408513 -237255840 - L2 LINE L2 -19 3253 3210 759 278 77 78 chr1 5408589 5408828 -237255525 + MLT1G LTR MaLR 15 253 -337 2013 130 3 0 chr1 5408828 5409127 -237255226 + AluSx SINE Alu 10 309 -3 759 278 77 78 chr1 5409127 5409462 -237254891 + MLT1G LTR MaLR 253 588 -2 246 276 0 0 chr1 5410566 5410624 -237253729 + (ATG)n Simple_repeat Simple_repeat 2 59 0 259 290 167 58 chr1 5411861 5412209 -237252144 + L2 LINE L2 2887 3272 0 241 259 37 25 chr1 5412868 5412949 -237251404 + MIR3 SINE MIR 104 185 -23 5405 123 49 8 chr1 5413473 5414332 -237250021 + L1PA16 LINE L1 5273 6166 0 1557 211 65 51 chr1 5414478 5414990 -237249363 - Charlie1b DNA MER1_type -2 521 3 498 221 47 47 chr1 5415049 5415198 -237249155 + MIR SINE MIR 45 193 -69 2493 42 0 6 chr1 5415563 5415876 -237248477 - AluY SINE Alu 0 311 1 192 263 42 76 chr1 5417980 5418098 -237246255 - L2 LINE L2 -219 3053 2940 360 267 34 27 chr1 5418278 5418424 -237245929 - L2 LINE L2 -963 2351 2205 242 272 49 12 chr1 5418636 5418717 -237245636 + L2 LINE L2 3173 3256 -16 2782 82 3 0 chr1 5418764 5419118 -237245235 + THE1A LTR MaLR 1 355 0 180 135 0 0 chr1 5424305 5424342 -237240011 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 269 244 13 13 chr1 5426126 5426204 -237238149 - MLT1K LTR MaLR -27 561 484 210 136 0 0 chr1 5426270 5426314 -237238039 + (TC)n Simple_repeat Simple_repeat 2 45 0 308 299 134 66 chr1 5426326 5426750 -237237603 - L1M4c LINE L1 -5081 1303 851 230 51 51 0 chr1 5426791 5426830 -237237523 + (TCTG)n Simple_repeat Simple_repeat 4 44 0 311 355 24 30 chr1 5427094 5427260 -237237093 - L2 LINE L2 -742 2572 2408 774 123 26 4 chr1 5427349 5427578 -237236775 + (TAGA)n Simple_repeat Simple_repeat 1 234 0 769 98 15 23 chr1 5427708 5427840 -237236513 - MLT1B LTR MaLR -9 381 251 3085 157 51 4 chr1 5428415 5428963 -237235390 + MER7C DNA MER2_type 14 587 -15 336 281 119 19 chr1 5429041 5429201 -237235152 - L1M4 LINE L1 -1034 5112 4937 268 336 51 4 chr1 5429273 5429508 -237234845 - L1M4 LINE L1 -1333 4813 4568 1964 170 0 0 chr1 5429592 5429880 -237234473 - AluJb SINE Alu -20 292 5 241 252 32 89 chr1 5429957 5430080 -237234273 - L1ME3 LINE L1 -78 6084 5969 2051 134 0 7 chr1 5430169 5430468 -237233885 - AluSx SINE Alu -15 297 1 534 309 68 40 chr1 5430549 5430946 -237233407 - L1ME3 LINE L1 -289 5881 5462 1748 190 19 13 chr1 5431060 5431098 -237233255 - L1MB7 LINE L1 -25 6159 6123 2190 122 0 0 chr1 5431098 5431386 -237232967 + AluSx SINE Alu 1 288 -24 243 0 0 0 chr1 5431387 5431414 -237232939 + (CTAAA)n Simple_repeat Simple_repeat 4 30 0 1748 190 19 13 chr1 5431414 5431747 -237232606 - L1MB7 LINE L1 -60 6124 5784 4065 212 87 16 chr1 5431756 5432454 -237231899 - L1ME3 LINE L1 -751 5395 4579 288 0 0 0 chr1 5432454 5432486 -237231867 + (CAAT)n Simple_repeat Simple_repeat 1 32 0 4065 212 87 16 chr1 5432486 5432965 -237231388 - L1ME3 LINE L1 -1567 4579 4135 269 303 62 78 chr1 5432955 5433427 -237230926 - L1M4 LINE L1 -924 5222 4763 * 2024 142 0 37 chr1 5433427 5433751 -237230602 - AluSx SINE Alu 0 312 1 269 303 62 78 chr1 5433751 5433968 -237230385 - L1M4 LINE L1 -1383 4763 4544 2254 128 0 6 chr1 5434175 5434488 -237229865 - AluSq SINE Alu -2 311 1 578 323 54 17 chr1 5434611 5435034 -237229319 - L1MC5 LINE L1 -960 6852 6415 302 184 66 0 chr1 5435268 5435344 -237229009 - L1 LINE L1 -1142 5004 4924 28 29 0 0 chr1 5435365 5435400 -237228953 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr1 5435534 5435565 -237228788 + AT_rich Low_complexity Low_complexity 1 31 0 2538 213 20 19 chr1 5435565 5436037 -237228316 - L1MD3 LINE L1 0 7995 7520 2722 107 0 6 chr1 5436037 5436403 -237227950 - THE1B LTR MaLR 0 364 1 2538 213 20 19 chr1 5436403 5436521 -237227832 - L1MD3 LINE L1 -475 7520 7404 338 308 0 0 chr1 5436521 5436612 -237227741 - MLT1F1 LTR MaLR -442 125 35 798 128 138 26 chr1 5436615 5436668 -237227685 - L1MD3 LINE L1 -882 7113 7067 192 40 0 0 chr1 5436668 5436693 -237227660 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 798 128 138 26 chr1 5436693 5436834 -237227519 - L1MD3 LINE L1 -928 7067 6897 965 283 114 0 chr1 5436932 5437345 -237227008 - L1MC5 LINE L1 -1919 5889 5430 448 315 28 17 chr1 5437664 5437845 -237226508 - MIR SINE MIR -48 214 32 1603 167 4 4 chr1 5437939 5438184 -237226169 - AluJb SINE Alu -66 246 2 335 352 29 0 chr1 5439112 5439217 -237225136 - MIR SINE MIR -83 179 72 1982 192 5 13 chr1 5439483 5439502 -237224851 - MLT2D LTR ERVL -22 392 374 411 21 0 0 chr1 5439502 5439550 -237224803 + (TG)n Simple_repeat Simple_repeat 1 48 0 1982 192 5 13 chr1 5439550 5439925 -237224428 - MLT2D LTR ERVL -40 374 1 2003 124 6 47 chr1 5440349 5440671 -237223682 - AluSx SINE Alu -3 309 1 2385 89 0 19 chr1 5441916 5442232 -237222121 - AluSg SINE Alu 0 310 1 1073 267 50 11 chr1 5443823 5444182 -237220171 - L1MC4a LINE L1 -1884 5924 5552 2855 233 35 9 chr1 5444722 5445358 -237218995 - MER82 DNA MER2_type 0 653 2 330 353 49 0 chr1 5445709 5445831 -237218522 - L2 LINE L2 -5 3267 3140 693 269 66 0 chr1 5445888 5446085 -237218268 - MER58A DNA MER1_type -14 210 1 283 375 0 0 chr1 5446137 5446233 -237218120 - L2 LINE L2 -224 3048 2953 327 104 0 0 chr1 5446489 5446537 -237217816 + (CAT)n Simple_repeat Simple_repeat 3 50 0 843 225 28 0 chr1 5447056 5447234 -237217119 + MER5A DNA MER1_type 3 185 -4 192 97 0 0 chr1 5448245 5448276 -237216077 + (TC)n Simple_repeat Simple_repeat 1 31 0 333 0 0 0 chr1 5448292 5448329 -237216024 + (GA)n Simple_repeat Simple_repeat 2 38 0 1046 22 22 43 chr1 5448343 5448527 -237215826 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 1619 191 70 0 chr1 5448564 5448893 -237215460 - MLT2D LTR ERVL -55 359 8 312 231 32 142 chr1 5448892 5449246 -237215107 + MLT1K LTR MaLR 7 248 -340 * 370 277 54 0 chr1 5449388 5449500 -237214853 + L2 LINE L2 3196 3313 0 1093 226 50 61 chr1 5451832 5452293 -237212060 - MLT1C LTR MaLR -10 457 2 1301 289 12 0 chr1 5454869 5455205 -237209148 + MER58B DNA MER1_type 1 340 -1 594 221 194 46 chr1 5455296 5455621 -237208732 - MLT1C LTR MaLR -61 406 34 297 250 6 11 chr1 5458715 5458895 -237205458 + CT-rich Low_complexity Low_complexity 2 180 0 778 267 5 5 chr1 5459329 5459539 -237204814 - MER58 DNA MER1_type -2184 236 27 477 170 21 17 chr1 5460316 5460493 -237203860 + MER20 DNA MER1_type 3 213 -6 279 0 0 0 chr1 5462122 5462153 -237202200 + (CA)n Simple_repeat Simple_repeat 2 32 0 820 157 7 41 chr1 5462198 5462325 -237202028 + AluJb SINE Alu 159 289 -23 485 31 0 16 chr1 5462325 5462389 -237201964 + (GAAAA)n Simple_repeat Simple_repeat 5 67 0 258 32 0 0 chr1 5462389 5462420 -237201933 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 820 157 7 41 chr1 5462420 5462438 -237201915 + AluJb SINE Alu 287 300 -12 339 25 0 0 chr1 5462642 5462682 -237201671 + (T)n Simple_repeat Simple_repeat 1 40 0 3520 37 105 0 chr1 5462692 5463151 -237201202 - L1PA4 LINE L1 -4 6151 5645 765 191 75 5 chr1 5464167 5464355 -237199998 - L1MB1 LINE L1 -254 5914 5714 651 150 31 10 chr1 5464354 5464547 -237199806 + L1MB1 LINE L1 5923 6168 0 * 265 164 45 60 chr1 5465630 5465697 -237198656 + MER45 DNA AcHobo 24 89 -89 1190 207 171 7 chr1 5465733 5466042 -237198311 - MLT1A1 LTR MaLR 0 365 6 674 241 119 53 chr1 5466593 5466912 -237197441 - L1MC4 LINE L1 -369 7673 7334 1639 174 18 12 chr1 5467049 5467377 -237196976 - MLT1B LTR MaLR -55 335 6 613 284 77 37 chr1 5467388 5467688 -237196665 - L1MC4 LINE L1 -797 7245 6919 2187 127 16 3 chr1 5467688 5467996 -237196357 - AluSx SINE Alu 0 312 1 613 284 77 37 chr1 5467996 5468152 -237196201 - L1MC4 LINE L1 -1123 6919 6771 1584 194 35 58 chr1 5469430 5469807 -237194546 + MLT1A2 LTR MaLR 3 370 -4 200 316 26 0 chr1 5470680 5470756 -237193597 - L2 LINE L2 -945 2369 2292 2973 13 0 0 chr1 5470915 5471231 -237193122 + AluYb8 SINE Alu 1 316 -2 273 319 132 24 chr1 5471416 5471667 -237192686 - L2 LINE L2 -15 3298 3021 1932 115 0 22 chr1 5471982 5472252 -237192101 + AluSx SINE Alu 35 298 -14 1187 265 61 82 chr1 5472784 5472911 -237191442 + MER21B LTR ERV1 60 188 -675 2230 106 3 3 chr1 5472911 5473204 -237191149 - AluSx SINE Alu -19 293 1 1187 265 61 82 chr1 5473204 5473745 -237190608 + MER21B LTR ERV1 188 714 -149 234 0 0 0 chr1 5474309 5474335 -237190018 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 258 32 0 0 chr1 5474334 5474365 -237189988 + (GA)n Simple_repeat Simple_repeat 1 31 0 180 238 0 0 chr1 5474418 5474481 -237189872 + (TG)n Simple_repeat Simple_repeat 1 63 0 182 290 7 0 chr1 5474519 5474657 -237189696 + (TG)n Simple_repeat Simple_repeat 1 139 0 288 258 0 0 chr1 5474723 5474847 -237189506 + (TG)n Simple_repeat Simple_repeat 2 125 0 240 307 0 0 chr1 5474929 5475108 -237189245 + (TG)n Simple_repeat Simple_repeat 2 180 0 243 276 143 0 chr1 5477130 5477228 -237187125 - L2 LINE L2 0 3313 3202 291 316 20 26 chr1 5477528 5477680 -237186673 - L2 LINE L2 -264 3049 2899 388 246 107 0 chr1 5477690 5477809 -237186544 + MLT1D LTR MaLR 7 138 -329 2035 172 36 27 chr1 5477809 5478357 -237185996 - MLT2A2 LTR ERVL 0 554 1 722 227 145 0 chr1 5478470 5478642 -237185711 + MLT1D LTR MaLR 309 505 0 2608 201 77 4 chr1 5478949 5479511 -237184842 - MER77 LTR ERV1 -2 603 1 718 317 189 18 chr1 5479523 5480283 -237184070 - L2 LINE L2 -815 2499 1610 702 210 11 11 chr1 5480326 5480502 -237183851 + MER53 DNA DNA 1 176 -13 596 215 94 54 chr1 5480572 5480795 -237183558 - L2 LINE L2 0 3313 3082 1622 42 12 6 chr1 5480814 5481093 -237183260 + L1P2 LINE L1 5159 5438 -716 568 79 22 0 chr1 5481091 5481180 -237183173 - L1P2 LINE L1 -635 5519 5429 * 275 85 0 0 chr1 5481178 5481225 -237183128 + L1PA3 LINE L1 6109 6155 0 * 302 285 85 72 chr1 5483345 5483580 -237180773 + L2 LINE L2 2855 3092 -180 24 0 0 0 chr1 5483642 5483666 -237180687 + AT_rich Low_complexity Low_complexity 1 24 0 962 209 134 110 chr1 5483682 5484128 -237180225 + MLT1C LTR MaLR 1 457 -10 213 255 138 0 chr1 5484160 5484254 -237180099 + L2 LINE L2 3161 3267 -5 764 174 7 0 chr1 5485187 5485342 -237179011 - L1MB5 LINE L1 -2 6172 6017 199 340 147 0 chr1 5487642 5487798 -237176555 + L2 LINE L2 2999 3177 -95 254 211 84 0 chr1 5489359 5489430 -237174923 + MLT1H1 LTR MaLR 1 77 -478 300 314 31 14 chr1 5489674 5489828 -237174525 + MLT1H1 LTR MaLR 400 554 -1 625 327 66 36 chr1 5490955 5491395 -237172958 - L2 LINE L2 -2 3311 2859 409 341 38 44 chr1 5491406 5491723 -237172630 + L2 LINE L2 2997 3311 -2 192 40 0 0 chr1 5491847 5491872 -237172481 + (CA)n Simple_repeat Simple_repeat 2 26 0 5093 112 38 17 chr1 5491958 5492823 -237171530 + L1PB2 LINE L1 5266 6148 -3 327 347 41 0 chr1 5492835 5492982 -237171371 - MIR SINE MIR -102 160 8 505 294 72 21 chr1 5493148 5493342 -237171011 + MIR SINE MIR 2 205 -57 1390 285 22 22 chr1 5493342 5493795 -237170558 + L1MCc LINE L1 17 469 -5954 1557 259 46 88 chr1 5493885 5494873 -237169480 + L1MCc LINE L1 657 1773 -4848 432 301 20 33 chr1 5495126 5495279 -237169074 - MIR SINE MIR -16 246 96 476 292 7 0 chr1 5495485 5495622 -237168731 - MIR SINE MIR -41 221 84 281 243 81 27 chr1 5495808 5495919 -237168434 + MLT1K LTR MaLR 465 581 -7 26 30 0 0 chr1 5496837 5496870 -237167483 + AT_rich Low_complexity Low_complexity 1 33 0 1894 164 59 16 chr1 5497115 5497486 -237166867 + MLT1B LTR MaLR 1 387 -3 430 267 44 7 chr1 5497916 5498040 -237166313 + MLT1H1 LTR MaLR 1 132 -423 1895 145 37 14 chr1 5498040 5498165 -237166188 + AluSx SINE Alu 1 122 -190 285 51 0 0 chr1 5498165 5498204 -237166149 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1895 145 37 14 chr1 5498204 5498374 -237165979 + AluSx SINE Alu 122 303 -9 978 213 21 28 chr1 5498407 5498735 -237165618 - MLT2B1 LTR ERVL 0 520 149 300 146 0 0 chr1 5498736 5498784 -237165569 - MLT2B1 LTR ERVL -472 48 1 343 266 133 36 chr1 5498785 5499049 -237165304 + MLT1H LTR MaLR 189 539 -10 2364 103 0 0 chr1 5499668 5499968 -237164385 - AluSq SINE Alu -13 300 1 506 235 0 3 chr1 5500021 5500324 -237164029 + (TG)n Simple_repeat Simple_repeat 1 301 0 21 36 0 0 chr1 5500904 5500932 -237163421 + AT_rich Low_complexity Low_complexity 1 28 0 1531 231 56 7 chr1 5502061 5502506 -237161847 + MLT1C LTR MaLR 1 467 0 1181 182 40 16 chr1 5502690 5502943 -237161410 - MLT1B LTR MaLR -21 369 111 2273 102 0 0 chr1 5503109 5503422 -237160931 + AluSx SINE Alu 1 313 0 1833 187 11 125 chr1 5504969 5505318 -237159035 - L1MB8 LINE L1 -1 6177 5790 2403 76 3 10 chr1 5505318 5505619 -237158734 - AluSg SINE Alu -11 299 1 1833 187 11 125 chr1 5505619 5505873 -237158480 - L1MB8 LINE L1 -388 5790 5645 2284 102 36 33 chr1 5505873 5506236 -237158117 - THE1B LTR MaLR 0 364 1 1833 187 11 125 chr1 5506236 5506257 -237158096 - L1MB8 LINE L1 -533 5645 5623 227 222 194 9 chr1 5506949 5507057 -237157296 - L2 LINE L2 -4 3268 3141 1081 225 29 29 chr1 5507253 5507569 -237156784 - LTR53 LTR ERVL 0 519 204 618 297 32 86 chr1 5508799 5509207 -237155146 - L2 LINE L2 -6 3307 2922 24 0 0 0 chr1 5509836 5509860 -237154493 + AT_rich Low_complexity Low_complexity 1 24 0 245 382 89 21 chr1 5511326 5511517 -237152836 - MIR SINE MIR -12 250 47 341 345 72 52 chr1 5511805 5512289 -237152064 - MLT1J LTR MaLR -15 496 3 869 287 6 18 chr1 5512673 5513004 -237151349 + L1ME4a LINE L1 5592 5918 -203 352 258 52 71 chr1 5513033 5513157 -237151196 + MIR SINE MIR 20 142 -120 2249 129 7 0 chr1 5513157 5513460 -237150893 + AluSq SINE Alu 1 305 -8 352 258 52 71 chr1 5513460 5513490 -237150863 + MIR SINE MIR 142 171 -91 189 375 0 29 chr1 5513514 5513618 -237150735 - L3 LINE CR1 -75 1502 1402 1073 157 0 0 chr1 5513687 5513853 -237150500 - FRAM SINE Alu 0 166 1 2175 122 3 0 chr1 5514232 5514526 -237149827 + AluSc SINE Alu 1 295 -14 1809 179 24 3 chr1 5514661 5515002 -237149351 - THE1A LTR MaLR -1 354 7 528 96 0 0 chr1 5515002 5515075 -237149278 - THE1B LTR MaLR -291 73 1 1917 246 17 2 chr1 5515266 5515729 -237148624 + L1MB5 LINE L1 5704 6173 -1 1989 168 0 0 chr1 5515811 5516115 -237148238 - AluJb SINE Alu 0 312 9 204 254 16 32 chr1 5516222 5516285 -237148068 - MIR3 SINE MIR -132 76 15 241 236 22 67 chr1 5516549 5516638 -237147715 - L2 LINE L2 -1 3271 3187 1120 192 27 5 chr1 5517280 5517499 -237146854 - MLT1A1 LTR MaLR 0 365 142 5403 140 3 21 chr1 5517510 5517850 -237146503 - L1MA6 LINE L1 0 6300 5955 2033 132 10 23 chr1 5517850 5518160 -237146193 - AluY SINE Alu -5 306 1 5403 140 3 21 chr1 5518160 5518781 -237145572 - L1MA6 LINE L1 -345 5955 5356 1480 186 11 55 chr1 5518783 5519149 -237145204 + L1 LINE L1 4957 5306 -840 847 178 29 11 chr1 5519157 5519331 -237145022 - MLT1A1 LTR MaLR -188 177 1 1221 211 71 6 chr1 5519538 5519860 -237144493 + MER89 LTR ERV1 208 550 -9 1489 194 19 16 chr1 5520539 5520734 -237143619 + L1MA8 LINE L1 5977 6175 -116 2516 144 16 11 chr1 5520734 5521177 -237143176 - MER65A LTR ERV1 0 445 1 1489 194 19 16 chr1 5521177 5521291 -237143062 + L1MA8 LINE L1 6175 6287 -4 2468 99 0 0 chr1 5521380 5521693 -237142660 - AluSq SINE Alu 0 313 1 301 310 70 14 chr1 5521939 5522081 -237142272 - MIR SINE MIR -43 219 70 1077 152 11 0 chr1 5522196 5522380 -237141973 + L1PA15 LINE L1 5967 6152 -13 21 0 0 0 chr1 5522387 5522408 -237141945 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1 5522532 5522553 -237141800 + AT_rich Low_complexity Low_complexity 1 21 0 273 319 21 49 chr1 5523345 5523489 -237140864 - MIR SINE MIR -51 211 72 262 269 0 13 chr1 5523617 5523695 -237140658 - MER58A DNA MER1_type -3 221 145 1930 113 3 24 chr1 5523700 5524053 -237140300 - MER4A LTR ERV1 0 664 261 638 131 0 10 chr1 5524053 5524152 -237140201 - MER4A LTR ERV1 -566 98 1 431 200 16 96 chr1 5524173 5524298 -237140055 - MER58A DNA MER1_type 0 119 5 2570 145 54 2 chr1 5524376 5524838 -237139515 - LTR19A LTR ERV1 0 486 1 324 331 138 37 chr1 5525189 5525485 -237138868 - L2 LINE L2 -84 3188 2863 2283 113 0 0 chr1 5526069 5526371 -237137982 + AluSg SINE Alu 1 302 -8 1183 246 96 46 chr1 5526398 5526919 -237137434 - MLT1E2 LTR MaLR 0 626 80 306 273 29 14 chr1 5526806 5526945 -237137408 - MLT2C1 LTR ERVL -199 198 58 * 184 341 47 24 chr1 5527421 5527506 -237136847 - L2 LINE L2 -542 2772 2686 439 280 86 5 chr1 5527507 5527693 -237136660 + L1MEd LINE L1 2 202 -5917 211 79 79 87 chr1 5527818 5527944 -237136409 + (AGGTG)n Simple_repeat Simple_repeat 1 125 0 326 326 30 68 chr1 5528114 5528431 -237135922 + L1MEd LINE L1 393 753 -5366 334 269 211 27 chr1 5528528 5528751 -237135602 + L2 LINE L2 2247 2510 -804 555 333 83 22 chr1 5529100 5529778 -237134575 + L1MB3 LINE L1 3990 4708 -1438 3103 160 78 66 chr1 5529933 5530616 -237133737 + LTR8 LTR ERV1 1 691 0 444 327 30 49 chr1 5531170 5531436 -237132917 + L1MB3 LINE L1 4973 5233 -913 980 221 0 0 chr1 5531442 5531641 -237132712 - MLT1B LTR MaLR 0 390 192 544 238 60 38 chr1 5532950 5533135 -237131218 + MER69 DNA AcHobo 168 356 -2170 694 177 0 0 chr1 5533135 5533258 -237131095 - MLT1B LTR MaLR 0 390 268 2607 86 77 20 chr1 5533258 5533282 -237131071 + MSTA LTR MaLR 1 22 -406 1934 140 184 11 chr1 5533282 5533647 -237130706 - MSTA LTR MaLR 0 428 1 2607 86 77 20 chr1 5533647 5534027 -237130326 + MSTA LTR MaLR 22 428 0 1337 153 97 0 chr1 5534027 5534275 -237130078 - MLT1B LTR MaLR -118 272 1 587 216 144 10 chr1 5534366 5534574 -237129779 + MER69 DNA AcHobo 2289 2524 -2 198 302 16 16 chr1 5534653 5534716 -237129637 + MIR SINE MIR 198 260 -2 417 226 0 0 chr1 5535194 5535287 -237129066 - L1MA7 LINE L1 -3 6288 6196 792 202 10 52 chr1 5535379 5535572 -237128781 - MER58A DNA MER1_type 0 224 40 2817 190 52 34 chr1 5535572 5536227 -237128126 + L1MB3 LINE L1 5461 6103 -80 2084 144 3 0 chr1 5536227 5536519 -237127834 + AluSx SINE Alu 1 293 -19 2326 90 7 7 chr1 5536522 5536822 -237127531 + AluSx SINE Alu 1 300 -12 2817 190 52 34 chr1 5536822 5536872 -237127481 + L1MB3 LINE L1 6104 6183 0 186 155 36 179 chr1 5537032 5537116 -237127237 - L3 LINE CR1 -1279 298 227 2294 132 3 0 chr1 5539066 5539376 -237124977 - AluSp SINE Alu -2 311 1 289 216 27 14 chr1 5540423 5540497 -237123856 - MLT1I LTR MaLR -27 382 308 1748 185 3 55 chr1 5540920 5541139 -237123214 - MLT1A1 LTR MaLR -6 359 167 959 128 0 0 chr1 5541139 5541272 -237123081 - FLAM_C SINE Alu 0 133 1 1748 185 3 55 chr1 5541272 5541431 -237122922 - MLT1A1 LTR MaLR -198 167 1 2157 249 60 18 chr1 5541619 5542241 -237122112 - MER21B LTR ERV1 -78 785 138 486 190 0 0 chr1 5542367 5542446 -237121907 - MER21B LTR ERV1 -773 90 12 538 231 0 22 chr1 5543039 5543221 -237121132 + (TATG)n Simple_repeat Simple_repeat 3 180 0 237 296 0 0 chr1 5543235 5543333 -237121020 + (TA)n Simple_repeat Simple_repeat 2 99 0 * 490 257 0 22 chr1 5543327 5543510 -237120843 + (TATG)n Simple_repeat Simple_repeat 1 179 0 180 204 27 48 chr1 5543730 5543877 -237120476 + (CATATA)n Simple_repeat Simple_repeat 1 144 0 201 217 0 0 chr1 5544042 5544125 -237120228 + (CA)n Simple_repeat Simple_repeat 1 83 0 215 83 0 83 chr1 5544265 5544313 -237120040 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 315 11 44 chr1 5545121 5545302 -237119051 + (CGGGG)n Simple_repeat Simple_repeat 5 179 0 2019 169 21 3 chr1 5546496 5546833 -237117520 - MER61A LTR ERV1 0 343 1 1105 218 27 27 chr1 5546908 5547206 -237117147 - MLT1C LTR MaLR -4 463 166 508 266 156 0 chr1 5547231 5547423 -237116930 - MER31B LTR ERV1 -25 441 220 567 236 50 0 chr1 5547656 5547796 -237116557 - MLT1C LTR MaLR -240 150 4 254 269 172 59 chr1 5547844 5548234 -237116119 - LTR16A1 LTR ERVL -6 451 18 231 200 0 0 chr1 5548234 5548279 -237116074 + (CAGGG)n Simple_repeat Simple_repeat 4 48 0 26 50 0 0 chr1 5548915 5548955 -237115398 + AT_rich Low_complexity Low_complexity 1 40 0 408 278 0 53 chr1 5550393 5550544 -237113809 + L2 LINE L2 3171 3313 0 528 208 25 0 chr1 5550580 5550700 -237113653 - MLT1D LTR MaLR -8 497 375 1439 138 58 7 chr1 5550704 5550920 -237113433 + MER61D LTR ERV1 1 205 -296 468 0 0 0 chr1 5550920 5550972 -237113381 + (CA)n Simple_repeat Simple_repeat 2 53 0 1439 138 58 7 chr1 5550972 5551161 -237113192 + MER61D LTR ERV1 205 501 0 1293 215 45 53 chr1 5551162 5551538 -237112815 - MLT1D LTR MaLR -132 373 1 188 296 34 80 chr1 5551585 5551673 -237112680 + L2 LINE L2 3185 3268 -4 416 303 92 16 chr1 5551826 5552011 -237112342 - MIR SINE MIR -1 261 63 228 224 0 20 chr1 5552537 5552586 -237111767 + GA-rich Low_complexity Low_complexity 3 50 0 262 353 24 39 chr1 5553471 5553678 -237110675 + L2 LINE L2 3109 3312 -1 1777 159 0 17 chr1 5553879 5554175 -237110178 - AluSx SINE Alu 0 312 22 231 36 0 0 chr1 5554941 5554969 -237109384 + (CA)n Simple_repeat Simple_repeat 1 28 0 1895 160 0 11 chr1 5556332 5556653 -237107700 - AluJb SINE Alu 0 320 3 228 296 78 39 chr1 5556694 5556951 -237107402 + L1MEd LINE L1 1402 1668 -4862 287 304 43 52 chr1 5557021 5557347 -237107006 + HAL1 LINE L1 1424 1746 -761 367 280 158 41 chr1 5557420 5557814 -237106539 + L1MEd LINE L1 2330 3735 -2805 386 282 112 30 chr1 5557878 5558353 -237106000 + L1MEd LINE L1 3276 3789 -2751 21 0 0 0 chr1 5558362 5558383 -237105970 + AT_rich Low_complexity Low_complexity 1 21 0 488 294 46 18 chr1 5558457 5558675 -237105678 + L1MEd LINE L1 3981 4204 -2336 4076 133 13 39 chr1 5558798 5559514 -237104839 + MER50 LTR ERV1 14 710 -24 235 185 19 37 chr1 5559620 5559674 -237104679 + GA-rich Low_complexity Low_complexity 3 55 0 586 309 66 18 chr1 5559780 5560295 -237104058 + L1MEd LINE L1 4523 5062 -1478 2407 122 111 8 chr1 5560358 5560744 -237103609 - MSTB LTR MaLR 0 426 1 492 283 143 12 chr1 5561048 5561299 -237103054 + MLT1J LTR MaLR 226 509 -2 354 292 70 39 chr1 5561327 5561889 -237102464 + L1MEd LINE L1 5297 5879 -727 260 265 147 29 chr1 5561910 5562046 -237102307 - L2 LINE L2 -246 3067 2916 2030 149 3 3 chr1 5563593 5563889 -237100464 + AluSx SINE Alu 3 298 -14 379 356 54 0 chr1 5565222 5565371 -237098982 + MER5B DNA MER1_type 6 162 -16 2295 80 0 0 chr1 5566447 5566761 -237097592 - L1PA8 LINE L1 -286 5886 5573 2332 56 20 0 chr1 5566762 5567064 -237097289 + L1PA8 LINE L1 5863 6170 -2 868 210 28 40 chr1 5567092 5567344 -237097009 - L1MB3 LINE L1 -4 6179 5931 2518 181 89 20 chr1 5567365 5567973 -237096380 - L1MC3 LINE L1 -12 7773 7124 1821 184 10 7 chr1 5568434 5568738 -237095615 + AluJo SINE Alu 1 305 -7 258 101 45 45 chr1 5568920 5569009 -237095344 + (TTTAA)n Simple_repeat Simple_repeat 4 92 0 3765 209 47 19 chr1 5570098 5570901 -237093452 + LTR1B LTR ERV1 1 826 0 560 286 7 0 chr1 5571636 5571783 -237092570 - MER3 DNA MER1_type -61 148 1 354 23 0 0 chr1 5572644 5572687 -237091666 + (CA)n Simple_repeat Simple_repeat 1 43 0 1641 216 29 3 chr1 5575707 5576058 -237088295 - MLT1A1 LTR MaLR 0 365 6 400 176 232 31 chr1 5576909 5577036 -237087317 - L1ME1 LINE L1 0 6334 6024 5342 203 30 31 chr1 5577038 5579277 -237085076 - L1MC1 LINE L1 0 6333 4083 2601 89 47 6 chr1 5579277 5579637 -237084716 - THE1C LTR MaLR 0 375 1 5342 203 30 31 chr1 5579637 5579656 -237084697 - L1MC1 LINE L1 -2250 4083 4065 323 322 131 20 chr1 5580432 5580631 -237083722 + MIR SINE MIR 8 228 -34 2198 171 24 31 chr1 5581450 5581871 -237082482 - MSTB LTR MaLR 0 426 9 283 241 45 62 chr1 5581930 5582042 -237082311 + MIR SINE MIR 34 143 -119 607 327 40 4 chr1 5582186 5582464 -237081889 + MLT1I LTR MaLR 119 406 -3 460 319 48 29 chr1 5582535 5582742 -237081611 + L2 LINE L2 3075 3285 -28 208 333 12 0 chr1 5582749 5582830 -237081523 + (CA)n Simple_repeat Simple_repeat 1 82 0 486 238 38 75 chr1 5582847 5583007 -237081346 - MIR SINE MIR -36 226 73 184 341 91 23 chr1 5583283 5583371 -237080982 + MER5B DNA MER1_type 39 132 -46 871 179 10 51 chr1 5583947 5584143 -237080210 + MLT1C LTR MaLR 1 188 -279 * 1382 181 7 34 chr1 5584142 5584435 -237079918 + MLT1C LTR MaLR 152 436 -31 2117 143 28 33 chr1 5584776 5585139 -237079214 - THE1B LTR MaLR -3 361 1 304 325 85 37 chr1 5585568 5585795 -237078558 + MLT1L LTR MaLR 350 591 -24 2348 134 111 8 chr1 5585795 5586183 -237078170 + MSTA LTR MaLR 1 428 0 304 325 85 37 chr1 5586183 5586201 -237078152 + MLT1L LTR MaLR 591 607 -8 1615 162 61 19 chr1 5586826 5587228 -237077125 - MLT1C LTR MaLR 0 467 8 28 0 0 0 chr1 5587940 5587968 -237076385 + AT_rich Low_complexity Low_complexity 1 28 0 225 227 30 15 chr1 5588050 5588116 -237076237 - MER21B LTR ERV1 -184 679 613 437 250 97 109 chr1 5588117 5588390 -237075963 - MER77 LTR ERV1 -4 601 318 2719 113 0 0 chr1 5588390 5588754 -237075599 + THE1B LTR MaLR 1 364 0 437 250 97 109 chr1 5588754 5589010 -237075343 - MER77 LTR ERV1 -287 318 60 3578 113 22 61 chr1 5589012 5590088 -237074265 + MER11A LTR ERVK 1 1071 0 1861 136 0 0 chr1 5590690 5590941 -237073412 - AluSx SINE Alu -22 290 40 1501 199 62 17 chr1 5591016 5591368 -237072985 + MLT1B LTR MaLR 1 368 -22 336 102 0 0 chr1 5592127 5592176 -237072177 + (TCC)n Simple_repeat Simple_repeat 3 51 0 1612 179 12 52 chr1 5592178 5592503 -237071850 - AluJo SINE Alu 0 312 1 367 310 87 20 chr1 5592506 5592761 -237071592 - L1ME4a LINE L1 -234 5887 5618 191 331 60 46 chr1 5593765 5593916 -237070437 + MIR SINE MIR 10 162 -100 254 194 15 0 chr1 5594459 5594526 -237069827 + CT-rich Low_complexity Low_complexity 4 71 0 262 262 107 0 chr1 5594562 5594665 -237069688 - L1ME2 LINE L1 -10 6154 6041 2162 112 31 3 chr1 5594675 5595011 -237069342 + AluSg SINE Alu 6 349 0 1397 239 55 42 chr1 5595014 5595558 -237068795 - L1ME2 LINE L1 -110 6054 5504 2417 136 63 29 chr1 5595833 5596245 -237068108 + MSTB LTR MaLR 1 426 0 656 315 28 0 chr1 5596354 5596567 -237067786 + MIR SINE MIR 15 233 -29 230 336 77 0 chr1 5596705 5596809 -237067544 + L2 LINE L2 2686 2797 -517 193 274 142 28 chr1 5596953 5597059 -237067294 + L2 LINE L2 2969 3086 -186 185 239 22 0 chr1 5597169 5597215 -237067138 + L2 LINE L2 3265 3311 -2 350 279 6 0 chr1 5597216 5597374 -237066979 + (TGGA)n Simple_repeat Simple_repeat 1 159 0 269 258 17 17 chr1 5597367 5597498 -237066855 + (TGGG)n Simple_repeat Simple_repeat 3 136 -44 * 2112 154 118 26 chr1 5597498 5597888 -237066465 + MSTA LTR MaLR 1 426 -2 269 258 17 17 chr1 5597888 5597934 -237066419 + (TGGG)n Simple_repeat Simple_repeat 135 180 0 801 220 3 7 chr1 5597945 5598254 -237066099 + (TGGA)n Simple_repeat Simple_repeat 1 307 0 489 253 0 0 chr1 5598284 5598446 -237065907 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 432 254 0 27 chr1 5598451 5598561 -237065792 + (TGGG)n Simple_repeat Simple_repeat 2 108 0 187 221 117 0 chr1 5599688 5599765 -237064588 + L2 LINE L2 1639 1724 -1590 1054 165 385 15 chr1 5599765 5600105 -237064248 + MER31B LTR ERV1 1 466 0 1315 314 73 26 chr1 5600106 5600766 -237063587 + L2 LINE L2 1722 2412 -902 513 221 0 19 chr1 5600765 5600869 -237063484 - L2 LINE L2 0 3313 3212 * 507 336 22 18 chr1 5600859 5600949 -237063404 + L2 LINE L2 2397 2485 -829 * 1145 205 14 0 chr1 5600949 5601164 -237063189 + MER20 DNA MER1_type 2 219 0 507 336 22 18 chr1 5601164 5601299 -237063054 + L2 LINE L2 2485 2623 -691 299 202 11 0 chr1 5601427 5601516 -237062837 + (CAT)n Simple_repeat Simple_repeat 2 91 0 730 169 6 12 chr1 5601530 5601702 -237062651 + (CAT)n Simple_repeat Simple_repeat 2 172 0 483 218 11 11 chr1 5601718 5601892 -237062461 + (CAT)n Simple_repeat Simple_repeat 1 174 0 263 194 32 0 chr1 5601902 5601964 -237062389 + (CACCAT)n Simple_repeat Simple_repeat 2 65 0 510 217 18 0 chr1 5601969 5602135 -237062218 + (CAT)n Simple_repeat Simple_repeat 2 170 0 471 206 14 7 chr1 5602163 5602304 -237062049 + (CAT)n Simple_repeat Simple_repeat 2 143 0 466 215 82 138 chr1 5602463 5602658 -237061695 + MIR SINE MIR 30 213 -49 213 269 67 76 chr1 5602623 5602742 -237061611 - MIR3 SINE MIR -7 201 84 * 1686 222 71 5 chr1 5604253 5604676 -237059677 - MLT1C LTR MaLR -16 451 1 1337 232 41 11 chr1 5604955 5605317 -237059036 - MLT1A2 LTR MaLR 0 374 2 24 0 0 0 chr1 5606035 5606059 -237058294 + AT_rich Low_complexity Low_complexity 1 24 0 2372 130 54 2 chr1 5606140 5606361 -237057992 - MSTA LTR MaLR 0 428 220 4249 54 4 2 chr1 5606361 5606881 -237057472 - L1PA6 LINE L1 0 6154 5634 2372 130 54 2 chr1 5606881 5607066 -237057287 - MSTA LTR MaLR -208 220 1 238 343 14 0 chr1 5607075 5607145 -237057208 - L2 LINE L2 0 3313 3243 795 239 123 51 chr1 5607354 5607647 -237056706 - MLT1J LTR MaLR -157 354 41 936 258 65 53 chr1 5609252 5609670 -237054683 - MLT1C LTR MaLR -1 466 44 237 224 17 17 chr1 5610503 5610561 -237053792 + MER5A DNA MER1_type 19 76 -113 * 322 235 37 0 chr1 5610553 5610634 -237053719 - MER5A DNA MER1_type -80 109 26 222 174 0 0 chr1 5611299 5611345 -237053008 + T-rich Low_complexity Low_complexity 1 46 0 207 249 65 60 chr1 5611738 5611834 -237052519 + MIR SINE MIR 65 146 -62 969 270 86 8 chr1 5611963 5612322 -237052031 - MLT1C LTR MaLR -28 439 53 1003 184 50 0 chr1 5613347 5613543 -237050810 - Tigger7 DNA MER2_type 0 2587 2382 2746 104 46 0 chr1 5613543 5613958 -237050395 - LTR1 LTR ERV1 0 785 352 753 165 0 0 chr1 5613963 5614127 -237050226 + CT-rich Low_complexity Low_complexity 1 164 0 325 257 0 55 chr1 5616051 5616160 -237048193 + MIR SINE MIR 40 142 -120 330 320 0 0 chr1 5616380 5616480 -237047873 + MIR SINE MIR 161 260 -2 764 250 85 4 chr1 5616482 5616718 -237047635 - MIR SINE MIR 0 262 8 398 290 10 5 chr1 5617465 5617678 -237046675 + (CA)n Simple_repeat Simple_repeat 1 214 0 591 230 67 12 chr1 5617678 5617843 -237046510 + MLT1C LTR MaLR 287 460 -7 382 246 57 8 chr1 5617855 5617977 -237046376 + MLT1J1 LTR MaLR 248 375 -71 335 206 118 113 chr1 5618522 5618660 -237045693 + LTR50 LTR ERVL 564 700 -95 2557 77 0 0 chr1 5618660 5618971 -237045382 - AluY SINE Alu 0 311 1 2022 132 35 0 chr1 5618971 5619259 -237045094 - AluSp SINE Alu -15 298 1 335 206 118 113 chr1 5619259 5619323 -237045030 + LTR50 LTR ERVL 699 768 -27 251 271 112 48 chr1 5620481 5620669 -237043684 + L2 LINE L2 2466 2665 -649 496 208 101 13 chr1 5620671 5620820 -237043533 + MLT1C LTR MaLR 7 168 -299 5552 54 8 11 chr1 5620908 5621615 -237042738 - L1PA7 LINE L1 0 6154 5450 673 264 67 11 chr1 5621618 5621902 -237042451 + MLT1C LTR MaLR 168 467 0 1785 90 5 0 chr1 5622267 5622489 -237041864 - AluSg/x SINE Alu -13 299 77 241 206 48 0 chr1 5622593 5622656 -237041697 + CT-rich Low_complexity Low_complexity 2 67 0 306 73 0 0 chr1 5622658 5622699 -237041654 + (CA)n Simple_repeat Simple_repeat 2 42 0 458 318 34 0 chr1 5622941 5623120 -237041233 - L1ME LINE L1 -456 5714 5530 299 219 12 61 chr1 5623138 5623220 -237041133 - L2 LINE L2 0 3313 3236 364 364 10 2 chr1 5623242 5623369 -237040984 + MIR SINE MIR 28 154 -54 298 231 0 50 chr1 5623370 5623491 -237040862 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 275 252 191 8 chr1 5623596 5623727 -237040626 + MIR SINE MIR 108 262 0 727 234 11 22 chr1 5623736 5623920 -237040433 - MER90 LTR ERV1 0 614 433 1101 221 204 3 chr1 5624059 5624416 -237039937 - MER90 LTR ERV1 -130 445 17 1797 113 51 90 chr1 5624850 5625240 -237039113 - THE1C LTR MaLR 0 375 1 1366 226 45 25 chr1 5625249 5625697 -237038656 + MLT1C LTR MaLR 1 467 0 370 202 22 22 chr1 5627419 5627508 -237036845 - MER92B LTR ERV1 -2 634 546 1756 224 95 25 chr1 5627760 5628309 -237036044 - MER92B LTR ERV1 -49 587 1 689 360 34 24 chr1 5628364 5628692 -237035661 - HERV16 LTR ERVL -2020 2976 2646 1848 156 0 29 chr1 5629896 5630203 -237034150 + AluJb SINE Alu 1 298 -14 358 318 34 20 chr1 5630466 5630614 -237033739 - MER5A DNA MER1_type -8 181 32 * 508 271 23 8 chr1 5630499 5630632 -237033721 + MER5A DNA MER1_type 55 189 0 203 242 65 0 chr1 5630823 5630885 -237033468 - L2 LINE L2 -6 3266 3201 182 385 8 8 chr1 5631023 5631145 -237033208 + L2 LINE L2 1705 1826 -1488 997 193 42 146 chr1 5631203 5631560 -237032793 - MLT1C LTR MaLR 0 390 71 420 19 0 0 chr1 5631559 5631611 -237032742 + THE1C LTR MaLR 123 174 -201 * 1503 150 62 11 chr1 5632304 5632577 -237031776 - THE1C LTR MaLR 0 375 89 1105 104 37 0 chr1 5632575 5632739 -237031614 - THE1C LTR MaLR -203 172 3 * 482 307 73 0 chr1 5633176 5633381 -237030972 + MIR SINE MIR 14 233 -29 510 270 55 18 chr1 5634240 5634403 -237029950 + MIR SINE MIR 85 253 -9 984 151 0 0 chr1 5634417 5634455 -237029898 + (CAT)n Simple_repeat Simple_repeat 1 217 0 984 151 0 0 chr1 5634455 5634634 -237029719 + (CAT)n Simple_repeat Simple_repeat 1 179 0 962 120 23 0 chr1 5634759 5634934 -237029419 + (CAT)n Simple_repeat Simple_repeat 1 179 0 408 302 50 23 chr1 5635091 5635266 -237029087 - MIR SINE MIR -48 214 34 925 124 0 0 chr1 5636344 5636473 -237027880 - AluSg1 SINE Alu -180 129 1 320 200 294 0 chr1 5636474 5636559 -237027794 - MER3 DNA MER1_type -95 114 5 429 303 12 36 chr1 5636567 5636732 -237027621 + L2 LINE L2 3151 3311 -2 730 274 100 20 chr1 5636921 5637220 -237027133 + MLT1I LTR MaLR 87 409 0 348 83 0 0 chr1 5637446 5637494 -237026859 + (CTATT)n Simple_repeat Simple_repeat 4 51 0 948 146 0 0 chr1 5637496 5637674 -237026679 + (CATTC)n Simple_repeat Simple_repeat 3 180 0 633 186 0 0 chr1 5637675 5637804 -237026549 + (CACTC)n Simple_repeat Simple_repeat 2 130 0 207 0 0 0 chr1 5639079 5639102 -237025251 + (TG)n Simple_repeat Simple_repeat 1 23 0 2138 226 12 53 chr1 5640057 5640562 -237023791 - MER66B LTR ERV1 -2 484 1 2288 130 37 11 chr1 5640715 5641070 -237023283 - THE1B LTR MaLR 0 364 1 230 303 64 9 chr1 5641471 5641580 -237022773 + MIR SINE MIR 133 247 -15 2846 35 15 0 chr1 5643697 5644037 -237020316 + L1PA4 LINE L1 5811 6155 0 274 207 0 0 chr1 5644077 5644135 -237020218 - Charlie5 DNA MER1_type -2522 90 33 1832 133 7 4 chr1 5645683 5645961 -237018392 - AluSx SINE Alu -13 299 21 2418 229 54 57 chr1 5646001 5646210 -237018143 - L1ME2 LINE L1 -9 6155 5947 820 291 43 78 chr1 5646210 5646902 -237017451 - L1MB1 LINE L1 -258 5931 5264 1890 286 52 37 chr1 5646911 5647784 -237016569 - L1ME2 LINE L1 -841 5305 4420 1216 134 259 14 chr1 5647793 5648083 -237016270 - MSTA LTR MaLR -67 361 1 9739 133 32 35 chr1 5648083 5649666 -237014687 - MSTA-int LTR MaLR 0 1580 3 1933 144 174 11 chr1 5649668 5650036 -237014317 - MSTA LTR MaLR 0 428 1 254 261 61 26 chr1 5650087 5650202 -237014151 + MLT1I LTR MaLR 19 137 -272 279 325 103 17 chr1 5650389 5650506 -237013847 + MLT1H LTR MaLR 407 533 -16 339 250 267 30 chr1 5650546 5650842 -237013511 - L2 LINE L2 -974 2340 1975 1803 203 16 18 chr1 5650844 5651228 -237013125 - MER89 LTR ERV1 -2 557 175 194 293 0 0 chr1 5651242 5651300 -237013053 - L2 LINE L2 -1333 1981 1924 349 270 43 74 chr1 5651326 5651556 -237012797 - L2 LINE L2 -1487 1827 1605 1357 214 85 55 chr1 5651600 5652034 -237012319 + MLT1C LTR MaLR 6 452 -15 1178 234 114 91 chr1 5652146 5652841 -237011512 - MER21B LTR ERV1 -130 733 23 991 30 15 0 chr1 5652841 5652972 -237011381 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 210 71 0 0 chr1 5653002 5653030 -237011323 + (CA)n Simple_repeat Simple_repeat 2 29 0 2100 113 0 0 chr1 5653030 5653314 -237011039 - AluSc SINE Alu -22 287 1 348 310 9 9 chr1 5654700 5654813 -237009540 + MER81 DNA DNA 2 114 0 214 316 0 0 chr1 5655028 5655085 -237009268 + (TG)n Simple_repeat Simple_repeat 1 57 0 2755 107 11 5 chr1 5655748 5656121 -237008232 - THE1C LTR MaLR 0 375 1 246 62 0 0 chr1 5657063 5657095 -237007258 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 260 359 17 0 chr1 5657095 5657212 -237007141 - L2 LINE L2 -13 3300 3182 181 318 218 13 chr1 5659330 5659569 -237004784 - L2 LINE L2 -4 3268 2981 1198 198 12 12 chr1 5659677 5659920 -237004433 - AluJo SINE Alu -69 243 1 377 325 49 25 chr1 5659922 5660085 -237004268 + MIR SINE MIR 65 231 -31 420 320 132 48 chr1 5660102 5660352 -237004001 - LTR16A1 LTR ERVL 0 457 187 279 79 0 0 chr1 5660472 5660510 -237003843 + (TA)n Simple_repeat Simple_repeat 2 39 0 2151 101 0 3 chr1 5660510 5660806 -237003547 - AluSx SINE Alu -17 295 1 1739 225 82 7 chr1 5660808 5661257 -237003096 + LTR53 LTR ERVL 23 505 -14 740 76 14 1 chr1 5661453 5661572 -237002781 + MSTA LTR MaLR 1 124 -302 1719 155 115 3 chr1 5661686 5662009 -237002344 + MSTA LTR MaLR 70 428 0 221 319 0 14 chr1 5662738 5662810 -237001543 - L2 LINE L2 -1 3271 3201 895 227 117 80 chr1 5665016 5665478 -236998875 + MLT2B1 LTR ERVL 42 520 0 303 206 33 60 chr1 5666177 5666361 -236997992 + (CACAG)n Simple_repeat Simple_repeat 1 179 0 337 173 29 64 chr1 5666382 5666555 -236997798 + (CACAA)n Simple_repeat Simple_repeat 5 171 0 399 206 41 0 chr1 5666764 5666861 -236997492 + MER89 LTR ERV1 1 101 -458 278 176 0 0 chr1 5667856 5667907 -236996446 + MLT1B LTR MaLR 299 349 -41 307 297 79 44 chr1 5667909 5668138 -236996215 - L2 LINE L2 -1262 2052 1816 198 326 61 10 chr1 5668177 5668275 -236996078 - MIR SINE MIR -109 153 51 257 215 0 31 chr1 5669086 5669151 -236995202 - MIR SINE MIR -107 155 93 242 219 37 0 chr1 5670727 5670809 -236993544 + (ATGGTG)n Simple_repeat Simple_repeat 2 86 0 1013 155 9 4 chr1 5670813 5671294 -236993059 + (ATG)n Simple_repeat Simple_repeat 1 662 0 1361 225 45 51 chr1 5671396 5671845 -236992508 + MER74A LTR ERVL 100 545 -13 324 308 125 47 chr1 5673943 5674407 -236989946 + L2 LINE L2 2233 2732 -582 302 335 30 37 chr1 5674703 5674778 -236989575 + L2 LINE L2 3107 3181 -132 2748 97 8 3 chr1 5674778 5675140 -236989213 + THE1B LTR MaLR 1 364 0 302 335 30 37 chr1 5675140 5675228 -236989125 + L2 LINE L2 3181 3269 -44 1115 132 2 8 chr1 5675247 5675727 -236988626 + (TGGA)n Simple_repeat Simple_repeat 1 477 0 659 207 12 0 chr1 5675741 5675910 -236988443 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 297 302 21 10 chr1 5675982 5676078 -236988275 - MIR SINE MIR -79 183 87 256 265 29 0 chr1 5676576 5676644 -236987709 - MER81 DNA DNA -1 113 44 * 488 247 0 0 chr1 5676643 5676736 -236987617 - MER81 DNA DNA -20 94 2 240 325 42 17 chr1 5677938 5678058 -236986295 - MIR SINE MIR -127 135 13 347 301 83 74 chr1 5678966 5679195 -236985158 - MIR SINE MIR -1 261 31 2213 265 23 5 chr1 5679205 5679821 -236984532 + L1ME3 LINE L1 5529 6155 -7 15459 218 22 7 chr1 5680186 5684576 -236979777 + L1PA13 LINE L1 1179 5663 -1134 478 116 147 0 chr1 5684581 5684676 -236979677 + AluSp/q SINE Alu 203 311 -2 566 337 30 17 chr1 5684688 5685050 -236979303 + L1PA13 LINE L1 5683 6049 -748 1339 123 5 9 chr1 5685264 5685475 -236978878 + L1PA15 LINE L1 5956 6165 0 23 0 0 0 chr1 5685475 5685498 -236978855 + AT_rich Low_complexity Low_complexity 1 23 0 220 271 0 0 chr1 5685610 5685669 -236978684 + (CACCAT)n Simple_repeat Simple_repeat 4 62 0 579 222 149 26 chr1 5685697 5685891 -236978462 + LTR16C LTR ERVL 272 489 -2 181 274 247 0 chr1 5685895 5685968 -236978385 + MIR SINE MIR 162 252 -10 3065 138 7 43 chr1 5686161 5686304 -236978049 - L1PA16 LINE L1 0 6166 6019 351 0 0 0 chr1 5686304 5686343 -236978010 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1645 168 0 34 chr1 5686343 5686635 -236977718 - AluJb SINE Alu -28 284 3 3065 138 7 43 chr1 5686635 5687047 -236977306 - L1PA16 LINE L1 -145 6021 5630 368 324 11 50 chr1 5687203 5687382 -236976971 + MIR SINE MIR 81 252 -10 294 286 52 59 chr1 5688016 5688156 -236976197 + MIR SINE MIR 18 154 -67 2103 119 3 0 chr1 5688164 5688467 -236975886 + AluSp SINE Alu 1 304 -9 664 278 62 73 chr1 5688539 5689021 -236975332 - MLT1J LTR MaLR -23 488 12 257 368 63 17 chr1 5690875 5691049 -236973304 + MIR SINE MIR 47 228 -34 430 279 0 95 chr1 5691411 5691590 -236972763 + MIR SINE MIR 24 185 -77 228 238 111 16 chr1 5691607 5691670 -236972683 + MLT1E LTR MaLR 1 69 -524 377 172 0 0 chr1 5691764 5691822 -236972531 + MLT1E LTR MaLR 81 138 -455 * 1309 204 135 13 chr1 5691813 5692247 -236972106 + MLT1E LTR MaLR 102 593 0 269 269 30 0 chr1 5692248 5692315 -236972038 + MIR SINE MIR 194 262 0 209 303 90 34 chr1 5693758 5693847 -236970506 - L2 LINE L2 -4 3268 3175 234 62 0 0 chr1 5693852 5693884 -236970469 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 243 133 0 0 chr1 5694243 5694288 -236970065 + (CA)n Simple_repeat Simple_repeat 2 46 0 2470 158 8 0 chr1 5694429 5694829 -236969524 - MER57A LTR ERV1 0 403 1 1342 216 102 12 chr1 5695982 5696325 -236968028 - MLT1A2 LTR MaLR 0 374 1 554 267 37 12 chr1 5696384 5696545 -236967808 - MIR SINE MIR -81 181 17 200 188 0 0 chr1 5696842 5696874 -236967479 + (TAAG)n Simple_repeat Simple_repeat 2 33 0 1999 118 7 13 chr1 5696958 5697264 -236967089 + AluSx SINE Alu 1 304 -8 483 107 0 0 chr1 5697271 5697346 -236967007 + (GAAA)n Simple_repeat Simple_repeat 3 77 0 1558 286 94 34 chr1 5697383 5698683 -236965670 + L1ME LINE L1 64 1432 -4648 246 296 17 61 chr1 5698791 5698906 -236965447 - L2 LINE L2 -2 3311 3202 285 214 31 0 chr1 5699378 5699476 -236964877 + GA-rich Low_complexity Low_complexity 3 103 0 516 276 101 59 chr1 5700421 5700849 -236963504 + MLT1K LTR MaLR 167 587 -1 1776 29 0 5 chr1 5701530 5701740 -236962613 - L1PA4 LINE L1 -2 6153 5945 247 257 163 35 chr1 5703293 5703495 -236960858 + LTR33 LTR ERVL 47 274 -247 1521 187 93 12 chr1 5704809 5705146 -236959207 - MSTD LTR MaLR 0 396 30 769 255 32 19 chr1 5705233 5705449 -236958904 + MER20 DNA MER1_type 1 219 0 280 178 41 55 chr1 5705665 5705738 -236958615 + L1ME LINE L1 5536 5607 -563 615 282 96 13 chr1 5705935 5706175 -236958178 + L2 LINE L2 2109 2380 -934 1328 205 46 58 chr1 5706175 5706570 -236957783 + MLT1B LTR MaLR 1 390 0 615 282 96 13 chr1 5706570 5706630 -236957723 + L2 LINE L2 2380 2434 -880 384 254 17 0 chr1 5706690 5706867 -236957486 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 298 315 11 0 chr1 5706871 5706963 -236957390 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 577 216 6 11 chr1 5706964 5707140 -236957213 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 351 0 0 0 chr1 5707228 5707267 -236957086 + (CA)n Simple_repeat Simple_repeat 2 40 0 1011 300 114 15 chr1 5707269 5707865 -236956488 + L2 LINE L2 2498 3150 -163 475 344 74 6 chr1 5707910 5708262 -236956091 + L1MC4a LINE L1 5526 5901 -1907 798 224 15 15 chr1 5708289 5708485 -236955868 + L1MEd LINE L1 258 453 -5919 441 253 0 0 chr1 5708541 5708703 -236955650 + (TG)n Simple_repeat Simple_repeat 1 162 0 764 210 0 34 chr1 5708907 5709083 -236955270 + LTR9B LTR ERV1 392 561 -83 3272 137 0 4 chr1 5709558 5710054 -236954299 + LOR1a LTR ERV1 4 497 0 2592 149 31 2 chr1 5710300 5710716 -236953637 - MSTA LTR MaLR 0 428 1 434 258 223 40 chr1 5710723 5711019 -236953334 + L1MEd LINE L1 1349 1804 -4578 292 277 98 0 chr1 5711365 5711477 -236952876 - MIR3 SINE MIR -45 163 41 2237 127 21 29 chr1 5711875 5712253 -236952100 - THE1C LTR MaLR 0 375 1 10413 131 28 6 chr1 5712253 5713782 -236950571 - THE1C-int LTR MaLR 0 1580 19 1744 147 8 0 chr1 5713786 5714052 -236950301 + THE1C LTR MaLR 108 375 0 945 207 18 0 chr1 5714387 5714551 -236949802 + FAM SINE Alu 3 169 -6 453 216 74 34 chr1 5715064 5715212 -236949141 - MER103 DNA DNA 0 166 13 371 269 75 0 chr1 5715212 5715305 -236949048 - L2 LINE L2 -3 3310 3211 198 320 154 0 chr1 5715387 5715562 -236948791 - L2 LINE L2 -303 3010 2809 207 329 0 0 chr1 5715618 5715694 -236948659 - L2 LINE L2 -12 3301 3226 2564 319 48 15 chr1 5715775 5716852 -236947501 - HERV16 LTR ERVL -1901 3095 2092 23 42 0 21 chr1 5717630 5717656 -236946697 + AT_rich Low_complexity Low_complexity 1 27 -20 2202 97 3 3 chr1 5717656 5717964 -236946389 - AluSp SINE Alu -3 310 3 23 42 0 21 chr1 5717964 5717985 -236946368 + AT_rich Low_complexity Low_complexity 27 47 0 389 318 166 9 chr1 5718008 5718219 -236946134 + MIR SINE MIR 17 260 -2 201 287 161 69 chr1 5718263 5718437 -236945916 - L2 LINE L2 0 3272 3083 2320 157 34 31 chr1 5718441 5718988 -236945365 - MLT2A2 LTR ERVL 0 554 1 204 323 32 0 chr1 5719051 5719113 -236945240 - L2 LINE L2 -560 2754 2691 633 320 92 52 chr1 5719140 5719574 -236944779 + L1MEc LINE L1 55 537 -5859 1930 129 7 26 chr1 5719574 5719876 -236944477 + AluSg SINE Alu 6 301 -9 633 320 92 52 chr1 5719876 5720237 -236944116 + L1MEc LINE L1 537 882 -5514 354 360 35 38 chr1 5720339 5720653 -236943700 + L1 LINE L1 4710 5022 -1124 252 0 0 0 chr1 5720717 5720745 -236943608 + (A)n Simple_repeat Simple_repeat 1 28 0 5499 121 22 2 chr1 5720745 5721785 -236942568 + L1PA15 LINE L1 5021 6078 -87 1806 201 18 18 chr1 5722424 5722807 -236941546 - MER89 LTR ERV1 -2 557 175 203 293 0 0 chr1 5722821 5722879 -236941474 - L2 LINE L2 -1333 1981 1924 347 270 43 74 chr1 5722905 5723135 -236941218 - L2 LINE L2 -1487 1827 1605 881 232 102 68 chr1 5723179 5723563 -236940790 + MLT1C LTR MaLR 6 402 -65 1070 229 218 21 chr1 5724171 5724289 -236940064 - MLT1C LTR MaLR 0 467 374 2092 138 13 45 chr1 5724289 5724526 -236939827 + THE1B LTR MaLR 1 223 -141 2147 109 3 0 chr1 5724526 5724820 -236939533 + AluSp SINE Alu 1 295 -18 2092 138 13 45 chr1 5724820 5724958 -236939395 + THE1B LTR MaLR 223 364 0 1070 229 218 21 chr1 5724958 5725224 -236939129 - MLT1C LTR MaLR -93 374 7 431 232 129 0 chr1 5725434 5725589 -236938764 + MER96 DNA MER1_type 1 175 0 2352 18 0 7 chr1 5725805 5726082 -236938271 - AluYb8 SINE Alu -2 316 42 1980 170 66 28 chr1 5727066 5727598 -236936755 + MLT2A2 LTR ERVL 1 553 -1 920 154 6 0 chr1 5728287 5728462 -236935891 + (CAT)n Simple_repeat Simple_repeat 3 178 0 263 207 37 0 chr1 5728524 5728606 -236935747 + (CACCAT)n Simple_repeat Simple_repeat 2 86 0 267 185 0 19 chr1 5730182 5730236 -236934117 + MIR SINE MIR 94 146 -62 204 326 61 10 chr1 5731056 5731154 -236933199 + MIR SINE MIR 51 153 -109 291 297 79 44 chr1 5731193 5731422 -236932931 + L2 LINE L2 1816 2052 -1262 1093 197 14 113 chr1 5731424 5731794 -236932559 - MLT1A2 LTR MaLR -41 333 1 242 295 205 0 chr1 5731855 5732011 -236932342 + MER3 DNA MER1_type 2 189 -20 259 294 78 17 chr1 5732212 5732392 -236931961 + L2 LINE L2 2375 2565 -749 1261 251 99 20 chr1 5732874 5733320 -236931033 - MER89 LTR ERV1 0 559 79 404 206 41 0 chr1 5734283 5734380 -236929973 - MER89 LTR ERV1 -458 101 1 297 200 22 67 chr1 5734572 5734752 -236929601 + (TTGTG)n Simple_repeat Simple_repeat 5 176 0 360 171 40 57 chr1 5734771 5734946 -236929407 + (CTGTG)n Simple_repeat Simple_repeat 3 174 0 322 194 39 56 chr1 5735031 5735211 -236929142 + (CTGTG)n Simple_repeat Simple_repeat 3 179 0 809 246 110 75 chr1 5735943 5736426 -236927927 - MLT2B1 LTR ERVL 0 520 21 232 306 0 14 chr1 5738598 5738670 -236925683 + L2 LINE L2 3201 3271 -1 1874 124 61 164 chr1 5739399 5739876 -236924477 - MSTA LTR MaLR 0 428 1 1726 215 97 15 chr1 5740072 5740522 -236923831 - LTR53 LTR ERVL -14 505 93 2129 102 0 3 chr1 5740522 5740816 -236923537 + AluSx SINE Alu 1 293 -19 279 79 0 0 chr1 5740816 5740854 -236923499 + (TA)n Simple_repeat Simple_repeat 2 39 0 1726 215 97 15 chr1 5740854 5740867 -236923486 - LTR53 LTR ERVL -425 94 3 357 320 132 48 chr1 5740974 5741224 -236923129 + LTR16A1 LTR ERVL 187 457 0 383 301 61 37 chr1 5741241 5741404 -236922949 - MIR SINE MIR -31 231 65 439 173 13 0 chr1 5741407 5741482 -236922871 + AluJ/FLAM SINE Alu 2 77 -235 1379 169 4 4 chr1 5741582 5741847 -236922506 + AluJb SINE Alu 40 304 0 1739 219 32 50 chr1 5742085 5742271 -236922082 + MLT1C LTR MaLR 2 190 -277 2161 58 17 17 chr1 5742271 5742562 -236921791 + AluY SINE Alu 1 291 -20 1739 219 32 50 chr1 5742562 5742850 -236921503 + MLT1C LTR MaLR 190 467 0 5584 92 17 1 chr1 5742999 5743781 -236920572 - L1PB1 LINE L1 -6 6145 5352 1386 176 90 14 chr1 5744260 5744563 -236919790 - MER61B LTR ERV1 0 425 1 467 202 53 48 chr1 5744845 5745033 -236919320 - L1M4 LINE L1 -935 5211 5023 572 300 105 76 chr1 5745067 5745411 -236918942 + L1M4 LINE L1 3426 3786 -2360 2129 97 10 0 chr1 5745411 5745701 -236918652 + AluSg SINE Alu 1 293 -17 572 300 105 76 chr1 5745701 5745776 -236918577 + L1M4 LINE L1 3786 3857 -2289 227 262 65 28 chr1 5745792 5745899 -236918454 + L1M2 LINE L1 5352 5462 -838 348 285 95 34 chr1 5745921 5746100 -236918253 + L1ME3A LINE L1 5773 5962 -208 550 167 74 105 chr1 5746216 5746268 -236918085 + L1MB2 LINE L1 6013 6065 -106 1716 145 3 41 chr1 5746268 5746586 -236917767 + AluSq SINE Alu 1 306 -7 550 167 74 105 chr1 5746586 5746695 -236917658 + L1MB2 LINE L1 6065 6169 -2 25 31 0 0 chr1 5746695 5746727 -236917626 + AT_rich Low_complexity Low_complexity 1 32 0 2061 111 21 0 chr1 5747051 5747339 -236917014 + AluSx SINE Alu 1 294 -18 2268 99 0 0 chr1 5748465 5748769 -236915584 - AluSx SINE Alu -8 304 1 3455 129 30 38 chr1 5749139 5749743 -236914610 + MER4A LTR ERV1 1 599 -1 1861 221 47 10 chr1 5749799 5750284 -236914069 - MLT1D LTR MaLR -2 503 1 371 256 144 73 chr1 5750396 5750638 -236913715 - MLT1I LTR MaLR 0 409 129 2129 118 0 0 chr1 5750638 5750935 -236913418 + AluSg1 SINE Alu 1 297 -12 371 256 144 73 chr1 5750935 5751074 -236913279 - MLT1I LTR MaLR -280 129 1 427 276 0 0 chr1 5751899 5751997 -236912356 - MIR SINE MIR -59 203 106 1052 219 38 19 chr1 5752014 5752334 -236912019 + MLT1C LTR MaLR 1 326 -141 575 207 155 1 chr1 5752523 5752652 -236911701 + MLT1C LTR MaLR 347 463 -4 2151 90 3 0 chr1 5753039 5753328 -236911025 - AluSg SINE Alu -20 290 1 1226 234 141 10 chr1 5754260 5754657 -236909696 + MLT1C LTR MaLR 4 452 -15 668 247 69 18 chr1 5754873 5755107 -236909246 - MLT1C LTR MaLR -18 433 202 1282 225 109 44 chr1 5755137 5755568 -236908785 - MLT1C LTR MaLR -8 459 1 414 213 25 65 chr1 5755571 5755742 -236908611 - MLT1C LTR MaLR -346 121 7 489 216 123 43 chr1 5755898 5756060 -236908293 - MER5B DNA MER1_type -3 175 1 292 316 74 0 chr1 5756139 5756234 -236908119 - MIR SINE MIR -72 136 35 342 282 12 0 chr1 5756404 5756668 -236907685 + G-rich Low_complexity Low_complexity 1 267 0 230 263 11 0 chr1 5756679 5756854 -236907499 + G-rich Low_complexity Low_complexity 1 177 0 1331 243 82 14 chr1 5757425 5757862 -236906491 + MLT1C LTR MaLR 1 467 0 401 173 0 27 chr1 5757903 5757978 -236906375 - AluS SINE Alu -240 73 1 1475 148 4 34 chr1 5758276 5758540 -236905813 + AluJb SINE Alu 8 263 -49 515 67 33 11 chr1 5758558 5758648 -236905705 + (GGA)n Simple_repeat Simple_repeat 1 92 0 305 236 99 45 chr1 5758755 5759055 -236905298 + L1MEc LINE L1 1389 1480 -4943 * 729 263 135 16 chr1 5759045 5759634 -236904719 + L1MEc LINE L1 2018 2762 -4181 * 1953 217 39 30 chr1 5759626 5759754 -236904599 + L1M4 LINE L1 3775 3900 -2246 3010 125 7 9 chr1 5759754 5760203 -236904150 + MER83 LTR ERV1 1 448 0 1953 217 39 30 chr1 5760203 5760617 -236903736 + L1M4 LINE L1 3900 4322 -1824 1541 271 11 4 chr1 5761140 5761597 -236902756 + L1MEc LINE L1 4059 4518 -2423 1829 143 118 0 chr1 5761597 5761912 -236902441 - MER47A DNA MER2_type 0 366 15 3138 225 52 55 chr1 5761914 5762873 -236901480 + L1MEc LINE L1 4606 5662 -1384 16828 30 0 1 chr1 5762873 5765628 -236898725 + L1PA3 LINE L1 3389 6152 -3 3138 225 52 55 chr1 5765628 5766269 -236898084 + L1MEc LINE L1 5662 6303 -743 2633 229 53 48 chr1 5766268 5766540 -236897813 + L1ME2 LINE L1 4983 5252 -912 * 225 0 0 0 chr1 5766540 5766565 -236897788 + (TG)n Simple_repeat Simple_repeat 1 25 0 2633 229 53 48 chr1 5766565 5766631 -236897722 + L1ME2 LINE L1 5252 5316 -848 1490 212 123 0 chr1 5766631 5766956 -236897397 - MLT1A1 LTR MaLR 0 365 1 2633 229 53 48 chr1 5766956 5767776 -236896577 + L1ME2 LINE L1 5316 6156 -8 1306 270 68 67 chr1 5767772 5768577 -236895776 + L1ME LINE L1 3480 4283 -1863 * 1921 126 0 4 chr1 5768577 5768855 -236895498 + AluSx SINE Alu 1 277 -35 221 0 35 0 chr1 5768860 5768889 -236895464 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1306 270 68 67 chr1 5768889 5769029 -236895324 + L1ME LINE L1 4286 4432 -1714 21 57 0 0 chr1 5769037 5769072 -236895281 + AT_rich Low_complexity Low_complexity 1 35 0 871 160 43 27 chr1 5769091 5769278 -236895075 - MSTB2 LTR MaLR 0 432 243 1868 201 36 27 chr1 5769285 5769832 -236894521 - MLT2A2 LTR ERVL -8 546 1 1015 142 45 102 chr1 5769832 5770077 -236894276 - MSTB2 LTR MaLR -201 231 1 1283 256 109 40 chr1 5770086 5770703 -236893650 + L1ME LINE L1 4502 5075 -1087 1616 179 14 7 chr1 5770703 5770999 -236893354 + AluJb SINE Alu 1 298 -14 1283 256 109 40 chr1 5770999 5771306 -236893047 + L1ME LINE L1 5075 5507 -655 2794 103 0 5 chr1 5771306 5771683 -236892670 + THE1C LTR MaLR 1 375 0 1283 256 109 40 chr1 5771683 5771739 -236892614 + L1ME LINE L1 5507 5558 -604 273 240 85 39 chr1 5771901 5772030 -236892323 - MLT1J1 LTR MaLR -232 214 80 212 299 11 23 chr1 5772316 5772403 -236891950 + GA-rich Low_complexity Low_complexity 3 88 0 572 317 95 20 chr1 5772462 5773029 -236891324 + L1M4 LINE L1 5283 5897 -277 1806 197 46 3 chr1 5773291 5773641 -236890712 - MLT1A1 LTR MaLR 0 365 1 1991 226 72 36 chr1 5773657 5774219 -236890134 - MLT1A1-int LTR MaLR -14 1721 924 2267 104 57 28 chr1 5774219 5774573 -236889780 - THE1B LTR MaLR 0 364 1 1991 226 72 36 chr1 5774573 5774603 -236889750 - MLT1A1-int LTR MaLR -811 924 897 531 183 78 0 chr1 5774808 5774923 -236889430 - MLT1A1 LTR MaLR 0 365 242 219 258 245 52 chr1 5776601 5776725 -236887628 + MIR SINE MIR 8 148 -71 2224 94 0 7 chr1 5777111 5777419 -236886934 - AluY SINE Alu -5 306 1 1522 290 111 8 chr1 5777442 5778084 -236886269 - L1MC4 LINE L1 0 8042 7335 728 282 146 15 chr1 5778089 5778419 -236885934 - L1MC4 LINE L1 -754 7288 6916 242 294 55 27 chr1 5778450 5778596 -236885757 - L1MC4a LINE L1 -1241 6567 6418 505 132 0 13 chr1 5778598 5778674 -236885679 + AluJ/FLAM SINE Alu 2 76 -236 1660 204 28 26 chr1 5978676 5979064 -236685289 - MLT2C1 LTR ERVL -8 389 1 841 170 0 0 chr1 5979104 5979245 -236685108 - FLAM_C SINE Alu -2 141 1 1954 110 30 43 chr1 5979658 5979959 -236684394 + AluSx SINE Alu 1 297 -15 265 298 46 53 chr1 5980036 5980167 -236684186 - MER5A DNA MER1_type -14 175 46 885 137 82 0 chr1 5980933 5981079 -236683274 + FRAM SINE Alu 8 165 -11 363 169 0 0 chr1 5981085 5981144 -236683209 + AluJ/FLAM SINE Alu 11 69 -233 1988 147 0 6 chr1 5982565 5982879 -236681474 + AluSx SINE Alu 1 312 0 1397 179 81 4 chr1 5984058 5984331 -236680022 + AluJb SINE Alu 1 294 -18 1972 115 0 17 chr1 5984333 5984661 -236679692 + AluSq SINE Alu 1 323 0 2196 99 3 10 chr1 5984902 5985215 -236679138 + AluSx SINE Alu 1 311 -1 180 77 0 0 chr1 5985741 5985767 -236678586 + (A)n Simple_repeat Simple_repeat 1 26 0 2174 101 3 3 chr1 5985884 5986180 -236678173 - AluSq SINE Alu -15 298 3 377 370 29 0 chr1 5986201 5986339 -236678014 - L1MC4 LINE L1 -1334 6708 6567 259 284 12 12 chr1 5986361 5986442 -236677911 + MLT1L LTR MaLR 1 81 -534 476 238 57 0 chr1 5986485 5986607 -236677746 + MLT1L LTR MaLR 163 291 -324 638 281 50 15 chr1 5986647 5986762 -236677591 + MLT1L LTR MaLR 410 536 -79 1596 170 23 13 chr1 5986762 5986936 -236677417 - AluJo SINE Alu -9 303 123 183 42 0 0 chr1 5986936 5986960 -236677393 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 5986960 5987085 -236677268 - AluJo SINE Alu -189 123 1 638 281 50 15 chr1 5987085 5987168 -236677185 + MLT1L LTR MaLR 536 615 0 246 128 0 0 chr1 5988155 5988194 -236676159 + (A)n Simple_repeat Simple_repeat 1 39 0 972 90 0 0 chr1 5989619 5989752 -236674601 + AluSp SINE Alu 1 133 -180 1066 162 5 79 chr1 5990458 5990512 -236673841 + MER20 DNA MER1_type 16 72 -147 2228 118 0 0 chr1 5990512 5990816 -236673537 + AluSx SINE Alu 1 304 -8 1066 162 5 79 chr1 5990816 5990977 -236673376 + MER20 DNA MER1_type 72 215 -4 1480 164 0 82 chr1 5991870 5992052 -236672301 - AluJb SINE Alu -9 303 158 2257 99 0 3 chr1 5992052 5992354 -236671999 - AluSx SINE Alu -10 302 2 1480 164 0 82 chr1 5992354 5992501 -236671852 - AluJb SINE Alu -154 158 1 2158 94 13 3 chr1 5993229 5993538 -236670815 + AluSx SINE Alu 1 312 0 2210 81 7 29 chr1 5993550 5993859 -236670494 + AluSg SINE Alu 1 302 -8 1735 156 30 7 chr1 5994316 5994611 -236669742 + AluJo SINE Alu 1 302 -10 258 105 0 0 chr1 5994707 5994745 -236669608 + (TG)n Simple_repeat Simple_repeat 2 39 0 895 132 0 0 chr1 5994771 5994907 -236669446 + AluJb SINE Alu 1 136 -176 2207 103 3 0 chr1 5995500 5995801 -236668552 - AluSx SINE Alu -8 304 3 203 322 17 0 chr1 5996197 5996256 -236668097 + L2 LINE L2 3244 3303 -10 2087 132 0 0 chr1 5996449 5996753 -236667600 + AluY SINE Alu 1 304 -7 2184 89 3 3 chr1 5996807 5997098 -236667255 - AluSx SINE Alu -21 291 1 688 219 140 79 chr1 5997486 5997875 -236666478 + MLT1C LTR MaLR 1 426 -41 284 125 0 0 chr1 5997974 5998014 -236666339 + Alu SINE Alu 1 40 -262 1786 151 3 3 chr1 5998014 5998298 -236666055 + AluJb SINE Alu 11 294 -18 2121 99 20 3 chr1 5998601 5998895 -236665458 - AluSx SINE Alu -13 299 1 294 218 92 79 chr1 5998896 5999126 -236665227 - MLT1C LTR MaLR -165 340 99 855 123 0 0 chr1 5999422 5999544 -236664809 - AluJ SINE Alu -8 304 183 957 105 0 0 chr1 5999547 5999680 -236664673 - AluJ SINE Alu -179 133 1 1990 132 0 0 chr1 5999710 6000021 -236664332 + AluSx SINE Alu 2 312 0 2826 200 43 32 chr1 6000890 6001474 -236662879 + MLT1E LTR MaLR 1 590 -3 626 286 57 40 chr1 6001567 6001815 -236662538 + MIR SINE MIR 8 259 -3 454 183 0 24 chr1 6002035 6002111 -236662242 + FLAM_A SINE Alu 45 119 -18 2120 130 0 0 chr1 6002111 6002411 -236661942 - AluSx SINE Alu -12 300 1 1393 118 22 18 chr1 6002512 6002741 -236661612 + AluJb SINE Alu 82 311 -1 628 198 25 0 chr1 6003260 6003381 -236660972 + MER2 DNA MER2_type 2 125 -220 763 143 84 0 chr1 6003388 6003507 -236660846 - AluSg/x SINE Alu -39 271 143 2122 99 3 0 chr1 6003509 6003803 -236660550 - AluSq SINE Alu -18 295 1 531 287 51 19 chr1 6003804 6003903 -236660450 + MER2 DNA MER2_type 123 217 -128 774 167 8 0 chr1 6003903 6004035 -236660318 - FLAM_C SINE Alu 0 133 1 531 287 51 19 chr1 6004035 6004151 -236660202 + MER2 DNA MER2_type 217 345 0 2170 92 7 13 chr1 6004370 6004675 -236659678 - AluSx SINE Alu -9 303 1 2069 142 0 0 chr1 6005504 6005813 -236658540 + AluJo SINE Alu 1 309 -3 297 322 68 1 chr1 6006041 6006187 -236658166 - MIR SINE MIR -67 141 18 297 280 118 0 chr1 6006459 6006552 -236657801 + L2 LINE L2 2872 2975 -338 224 209 0 0 chr1 6006587 6006630 -236657723 + L2 LINE L2 3230 3272 0 21 0 0 0 chr1 6009155 6009176 -236655177 + GC_rich Low_complexity Low_complexity 1 21 0 1941 108 29 55 chr1 6010398 6010705 -236653648 - AluSq SINE Alu -14 299 1 276 272 93 25 chr1 6010808 6011001 -236653352 - MIR SINE MIR -31 177 2 257 0 0 29 chr1 6011100 6011134 -236653219 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 2076 104 21 0 chr1 6011911 6012200 -236652153 - AluSx SINE Alu -17 295 1 1344 150 5 0 chr1 6012383 6012596 -236651757 + AluJo SINE Alu 75 288 -24 28 29 0 0 chr1 6012602 6012637 -236651716 + AT_rich Low_complexity Low_complexity 1 35 0 653 171 8 0 chr1 6012638 6012761 -236651592 + L1MB7 LINE L1 6045 6168 -16 421 280 65 60 chr1 6013579 6013788 -236650565 - MIR SINE MIR -16 246 34 1009 133 66 0 chr1 6014040 6014206 -236650147 - AluSg/x SINE Alu -2 308 132 2114 115 0 19 chr1 6014206 6014520 -236649833 - AluSx SINE Alu -4 308 1 421 163 325 0 chr1 6014655 6014778 -236649575 - MER3 DNA MER1_type -6 203 41 2197 113 0 7 chr1 6015269 6015578 -236648775 + AluSx SINE Alu 1 307 -5 2411 246 46 43 chr1 6015855 6016564 -236647789 + L2 LINE L2 1883 2596 -718 1363 171 57 67 chr1 6016564 6016863 -236647490 - AluJb SINE Alu -16 296 1 2411 246 46 43 chr1 6016863 6016958 -236647395 + L2 LINE L2 2596 2689 -625 722 282 177 26 chr1 6016965 6017344 -236647009 + L2 LINE L2 2863 3298 -15 1250 157 14 9 chr1 6017422 6017639 -236646714 + LTR26E LTR ERV1 397 614 -8 2211 95 6 13 chr1 6018381 6018696 -236645657 + AluSq SINE Alu 1 313 0 446 33 0 16 chr1 6020061 6020122 -236644231 + (TAGA)n Simple_repeat Simple_repeat 3 62 0 1394 164 30 69 chr1 6020122 6020427 -236643926 - AluJb SINE Alu -19 293 1 817 183 15 0 chr1 6020721 6020858 -236643495 - FLAM_C SINE Alu -3 140 2 820 169 0 0 chr1 6020931 6021061 -236643292 - FLAM_C SINE Alu -1 132 3 1975 139 13 3 chr1 6021152 6021494 -236642859 + AluSx SINE Alu 1 345 0 1714 141 0 4 chr1 6021519 6021781 -236642572 + AluJb SINE Alu 34 294 -18 452 240 40 0 chr1 6023189 6023314 -236641039 + MIR3 SINE MIR 58 187 -21 200 216 0 20 chr1 6023859 6023910 -236640443 + CT-rich Low_complexity Low_complexity 2 51 0 197 65 32 0 chr1 6025117 6025148 -236639205 + (CGGG)n Simple_repeat Simple_repeat 1 32 0 436 72 29 0 chr1 6027951 6028020 -236636333 + (TCC)n Simple_repeat Simple_repeat 1 71 0 210 150 0 0 chr1 6028032 6028072 -236636281 + (CTG)n Simple_repeat Simple_repeat 3 42 0 187 31 62 0 chr1 6029106 6029138 -236635215 + A-rich Low_complexity Low_complexity 2 35 0 252 0 0 0 chr1 6029737 6029765 -236634588 + (TG)n Simple_repeat Simple_repeat 2 29 0 400 368 0 28 chr1 6030130 6030312 -236634041 - MIR3 SINE MIR -2 206 30 223 212 153 0 chr1 6030364 6030449 -236633904 + MIR3 SINE MIR 66 163 -45 1707 197 92 15 chr1 6030600 6031027 -236633326 - MLT1C LTR MaLR 0 467 1 2383 60 0 3 chr1 6031108 6031409 -236632944 - AluY SINE Alu -11 300 1 2320 79 7 0 chr1 6031494 6031798 -236632555 - AluSp SINE Alu -7 306 1 636 182 179 23 chr1 6031829 6032019 -236632334 - MIR SINE MIR -56 206 1 844 145 0 8 chr1 6032269 6032400 -236631953 + FLAM_C SINE Alu 4 133 0 2298 88 3 0 chr1 6032985 6033282 -236631071 - AluSp SINE Alu -7 306 9 184 326 0 0 chr1 6033914 6033963 -236630390 - L2 LINE L2 0 3313 3265 1989 113 38 3 chr1 6034435 6034728 -236629625 - AluSx SINE Alu -9 303 1 2162 100 17 0 chr1 6034774 6035075 -236629278 + AluSp SINE Alu 2 307 -6 279 292 67 46 chr1 6035086 6035281 -236629072 + L2 LINE L2 3114 3312 -1 1788 169 3 0 chr1 6035373 6035674 -236628679 - AluSx SINE Alu -10 302 1 207 313 27 68 chr1 6036173 6036205 -236628148 + L2 LINE L2 3132 3164 -108 1805 157 0 41 chr1 6036205 6036347 -236628006 + AluJo SINE Alu 1 147 -165 2223 89 3 7 chr1 6036347 6036649 -236627704 + AluSp SINE Alu 1 301 -12 1805 157 0 41 chr1 6036649 6036825 -236627528 + AluJo SINE Alu 147 306 -6 207 313 27 68 chr1 6036825 6036939 -236627414 + L2 LINE L2 3164 3272 0 2023 169 19 3 chr1 6036984 6037344 -236627009 - MLT1B LTR MaLR 0 390 25 329 102 20 0 chr1 6037405 6037454 -236626899 - MLT1B LTR MaLR -340 50 1 249 33 0 0 chr1 6037473 6037503 -236626850 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 492 274 62 44 chr1 6037715 6037962 -236626391 - MIR SINE MIR -12 250 1 586 184 65 30 chr1 6038219 6038366 -236625987 + MER53 DNA DNA 1 156 -33 2380 92 0 0 chr1 6038366 6038669 -236625684 + AluSx SINE Alu 1 303 -9 586 184 65 30 chr1 6038669 6038689 -236625664 + MER53 DNA DNA 156 174 -15 1220 284 28 54 chr1 6038941 6039402 -236624951 - MLT1J LTR MaLR -49 462 14 1479 178 52 0 chr1 6039454 6039724 -236624629 - AluJb SINE Alu -22 290 7 208 283 0 0 chr1 6040039 6040092 -236624261 - L2 LINE L2 -31 3241 3189 1888 143 0 10 chr1 6040708 6041002 -236623351 + AluJb SINE Alu 1 291 -21 2060 143 7 0 chr1 6041002 6041310 -236623043 + AluSg SINE Alu 1 310 0 2017 122 24 0 chr1 6041833 6042127 -236622226 + AluSx SINE Alu 1 301 -11 2025 84 3 34 chr1 6042127 6042448 -236621905 + AluSx SINE Alu 1 312 0 2155 117 3 0 chr1 6042723 6043032 -236621321 - AluSx SINE Alu -2 310 1 1912 120 68 0 chr1 6043576 6043868 -236620485 - AluSx SINE Alu 0 312 1 1687 108 88 0 chr1 6043882 6044153 -236620200 - AluJb SINE Alu 0 304 12 2477 62 0 0 chr1 6044576 6044881 -236619472 - AluY SINE Alu -6 305 1 892 151 0 7 chr1 6044882 6045028 -236619325 - AluJb SINE Alu -167 145 1 3888 165 46 23 chr1 6045040 6045504 -236618849 - L1MB4 LINE L1 -84 6096 5644 1994 89 55 28 chr1 6045504 6045795 -236618558 - AluSx SINE Alu -13 299 1 3888 165 46 23 chr1 6045795 6046233 -236618120 - L1MB4 LINE L1 -536 5644 5173 914 142 0 8 chr1 6046408 6046542 -236617811 + FLAM_C SINE Alu 1 133 0 1870 143 13 23 chr1 6047103 6047411 -236616942 + AluJb SINE Alu 1 305 -7 2135 95 0 20 chr1 6047484 6047780 -236616573 + AluSx SINE Alu 23 312 0 1833 125 71 14 chr1 6048330 6048488 -236615865 - AluSx SINE Alu 0 312 165 1893 143 3 10 chr1 6048488 6048782 -236615571 - AluSc SINE Alu -17 292 1 1833 125 71 14 chr1 6048782 6048918 -236615435 - AluSx SINE Alu -147 165 1 193 333 0 0 chr1 6048920 6048983 -236615370 + L2 LINE L2 2454 2516 -798 1783 201 45 21 chr1 6049041 6049465 -236614888 + MER74A LTR ERVL 26 459 -99 2286 94 0 3 chr1 6049465 6049572 -236614781 - AluSc SINE Alu 0 309 203 1037 82 6 22 chr1 6049572 6049755 -236614598 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2286 94 0 3 chr1 6049755 6050304 -236614049 - AluSc SINE Alu -106 203 1 475 176 19 37 chr1 6050306 6050414 -236613939 + MER74A LTR ERVL 443 548 -10 2117 128 0 0 chr1 6050415 6050720 -236613633 - AluSx SINE Alu -7 305 1 841 288 105 30 chr1 6050826 6051399 -236612954 + L2 LINE L2 2677 3294 -19 236 224 0 0 chr1 6052172 6052221 -236612132 - L2 LINE L2 -3 3269 3221 4055 165 15 82 chr1 6052343 6052566 -236611787 + L1MB8 LINE L1 4920 5156 -1022 2119 125 0 0 chr1 6052566 6052862 -236611491 + AluSq SINE Alu 1 296 -17 4055 165 15 82 chr1 6052862 6053094 -236611259 + L1MB8 LINE L1 5156 5402 -776 1630 162 0 45 chr1 6053094 6053408 -236610945 + AluJb SINE Alu 1 300 -12 4055 165 15 82 chr1 6053408 6053569 -236610784 + L1MB8 LINE L1 5402 5572 -606 2361 78 3 7 chr1 6053569 6053877 -236610476 + AluSx SINE Alu 1 307 -5 4055 165 15 82 chr1 6053877 6054020 -236610333 + L1MB8 LINE L1 5572 5723 -455 1914 127 7 23 chr1 6054020 6054319 -236610034 + AluSx SINE Alu 1 294 -18 4055 165 15 82 chr1 6054319 6054534 -236609819 + L1MB8 LINE L1 5723 5771 -407 1956 141 17 0 chr1 6054534 6054833 -236609520 + AluSx SINE Alu 1 304 -8 4055 165 15 82 chr1 6054833 6055216 -236609137 + L1MB8 LINE L1 5771 6178 0 2126 92 14 3 chr1 6055221 6055516 -236608837 + AluSx SINE Alu 1 298 -14 2037 127 0 7 chr1 6055612 6055911 -236608442 + AluSx SINE Alu 3 299 -13 1296 192 112 0 chr1 6055920 6056196 -236608157 + AluJo SINE Alu 6 312 0 524 202 54 8 chr1 6056200 6056329 -236608024 + MLT1E2 LTR MaLR 36 170 -456 826 137 0 0 chr1 6056331 6056455 -236607898 - AluSg/x SINE Alu -18 292 169 1908 106 0 0 chr1 6056455 6056710 -236607643 - AluSq SINE Alu -58 255 1 813 147 74 165 chr1 6056710 6056737 -236607616 + MLT1E2 LTR MaLR 163 191 -314 2494 65 0 0 chr1 6056737 6057047 -236607306 + AluY SINE Alu 1 310 -1 813 147 74 165 chr1 6057047 6057427 -236606926 + MLT1E2 LTR MaLR 191 505 0 1684 151 3 43 chr1 6057487 6057786 -236606567 + AluJo SINE Alu 13 299 -13 234 170 22 0 chr1 6057974 6058023 -236606330 + MIR SINE MIR 95 140 -68 2391 77 3 0 chr1 6058677 6058988 -236605365 - AluSp SINE Alu -1 312 1 1905 121 13 26 chr1 6058988 6059292 -236605061 - AluSx SINE Alu -11 301 1 2000 113 0 0 chr1 6059890 6060202 -236604151 + AluJb SINE Alu 29 340 0 316 265 191 25 chr1 6060366 6060528 -236603825 - MIR SINE MIR -9 253 65 30 58 0 14 chr1 6060862 6060906 -236603447 + GC_rich Low_complexity Low_complexity 1 45 -23 208 24 24 71 chr1 6060906 6060948 -236603405 + (CCCCCG)n Simple_repeat Simple_repeat 5 44 0 30 58 0 14 chr1 6060948 6060972 -236603381 + GC_rich Low_complexity Low_complexity 45 68 0 44 70 0 0 chr1 6061269 6061355 -236602998 + GC_rich Low_complexity Low_complexity 1 86 0 26 64 0 0 chr1 6061767 6061814 -236602539 + AT_rich Low_complexity Low_complexity 1 47 0 1689 164 0 4 chr1 6061828 6062108 -236602245 - AluJb SINE Alu -31 281 3 1834 102 8 8 chr1 6062223 6062488 -236601865 - AluSx SINE Alu -47 265 1 1908 110 16 39 chr1 6062578 6062887 -236601466 + AluSx SINE Alu 1 302 -10 463 244 306 0 chr1 6062889 6063049 -236601304 - MIR SINE MIR -6 256 48 689 221 32 100 chr1 6063359 6063431 -236600922 + MIR SINE MIR 31 106 -156 2054 117 40 0 chr1 6063431 6063731 -236600622 - AluSx SINE Alu 0 312 1 689 221 32 100 chr1 6063731 6063907 -236600446 + MIR SINE MIR 106 262 0 1539 221 192 32 chr1 6064039 6064978 -236599375 - L2 LINE L2 0 3313 2234 620 194 12 43 chr1 6064987 6065233 -236599120 + MER63 DNA MER1_type 1 915 -147 1920 138 0 0 chr1 6065233 6065524 -236598829 - AluSx SINE Alu 0 312 22 476 331 6 29 chr1 6066665 6066840 -236597513 - MIR3 SINE MIR -31 177 7 1797 122 29 11 chr1 6067587 6067898 -236596455 - AluJb SINE Alu 0 316 1 326 319 135 12 chr1 6068022 6068185 -236596168 + MIR SINE MIR 80 262 0 184 311 40 0 chr1 6068222 6068296 -236596057 + MER5A DNA MER1_type 35 111 -78 207 206 0 73 chr1 6068459 6068527 -236595826 - MER5B DNA MER1_type -115 63 1 259 271 90 71 chr1 6070175 6070330 -236594023 + MIR SINE MIR 57 214 -48 850 258 68 0 chr1 6070385 6070606 -236593747 - MIR SINE MIR -22 240 5 2112 95 7 3 chr1 6072148 6072442 -236591911 - AluSx SINE Alu -17 295 1 228 340 10 10 chr1 6074450 6074553 -236589800 + CT-rich Low_complexity Low_complexity 2 104 0 756 163 23 0 chr1 6074717 6074846 -236589507 + FLAM_A SINE Alu 1 132 -1 334 219 0 79 chr1 6076557 6076735 -236587618 + (CACCC)n Simple_repeat Simple_repeat 5 168 0 339 25 0 0 chr1 6077632 6077672 -236586681 + (TTG)n Simple_repeat Simple_repeat 2 41 0 224 292 0 14 chr1 6078189 6078261 -236586092 + MIR SINE MIR 130 200 -62 630 180 50 29 chr1 6078593 6078732 -236585621 - FLAM_A SINE Alu 0 142 1 604 167 48 8 chr1 6078769 6078895 -236585458 - L1MB7 LINE L1 -19 6165 6035 511 268 73 0 chr1 6079667 6079831 -236584522 + MER104 DNA MER2_type 1 176 -4 531 304 86 45 chr1 6080081 6080272 -236584081 - MIR SINE MIR -6 256 50 1948 122 11 0 chr1 6080272 6080598 -236583755 + AluSx SINE Alu 1 329 0 531 304 86 45 chr1 6080598 6080647 -236583706 - MIR SINE MIR -212 50 4 2528 207 48 11 chr1 6080884 6081453 -236582900 - L1MB8 LINE L1 0 6178 5589 1930 151 0 0 chr1 6081463 6081780 -236582573 - AluJo SINE Alu 0 317 1 240 299 0 58 chr1 6081852 6081939 -236582414 + Charlie8 DNA MER1_type 127 208 -2209 614 288 19 28 chr1 6082167 6082382 -236581971 + MIR SINE MIR 12 224 -38 264 280 87 29 chr1 6083157 6083328 -236581025 - L1MEd LINE L1 -5058 1061 875 1592 140 55 49 chr1 6083328 6083635 -236580718 - AluJb SINE Alu -3 309 1 264 280 87 29 chr1 6083635 6083670 -236580683 - L1MEd LINE L1 -5244 875 843 181 200 25 0 chr1 6083924 6083964 -236580389 - L2 LINE L2 -252 3020 2980 292 213 20 80 chr1 6084333 6084483 -236579870 + (TTG)n Simple_repeat Simple_repeat 2 142 0 232 256 45 51 chr1 6084556 6084732 -236579621 + (TTG)n Simple_repeat Simple_repeat 2 176 0 275 211 50 67 chr1 6084807 6084987 -236579366 + (TTG)n Simple_repeat Simple_repeat 2 178 0 215 160 60 20 chr1 6085004 6085104 -236579249 + (TTG)n Simple_repeat Simple_repeat 2 105 0 2331 69 13 3 chr1 6085182 6085486 -236578867 - AluY SINE Alu -4 307 1 225 211 38 53 chr1 6085631 6085764 -236578589 + (TTATG)n Simple_repeat Simple_repeat 2 132 0 331 163 42 105 chr1 6085894 6086084 -236578269 + (TTG)n Simple_repeat Simple_repeat 2 179 0 387 185 52 58 chr1 6086116 6086289 -236578064 + (TTG)n Simple_repeat Simple_repeat 2 173 0 304 225 33 71 chr1 6086318 6086500 -236577853 + (TTG)n Simple_repeat Simple_repeat 2 176 0 220 193 61 83 chr1 6086531 6086712 -236577641 + (TTGTG)n Simple_repeat Simple_repeat 2 178 0 * 396 181 44 72 chr1 6086579 6086946 -236577407 + (TTG)n Simple_repeat Simple_repeat 1 356 0 361 327 168 13 chr1 6087011 6087631 -236576722 + L2 LINE L2 2288 3017 -296 284 200 122 11 chr1 6087759 6087849 -236576504 - MIR SINE MIR -96 166 67 327 256 144 24 chr1 6089008 6089133 -236575220 - MIR SINE MIR -16 246 107 218 286 60 65 chr1 6091398 6091566 -236572787 - L2 LINE L2 -182 3090 2924 898 115 0 0 chr1 6091870 6091992 -236572361 - FLAM_C SINE Alu -21 122 1 2025 108 17 0 chr1 6093023 6093318 -236571035 - AluSx SINE Alu -12 300 1 296 319 113 11 chr1 6093977 6094162 -236570191 + MER112 DNA MER1_type 3 206 -54 1809 163 14 0 chr1 6094170 6094465 -236569888 + AluJo SINE Alu 12 310 -2 2242 70 28 0 chr1 6097146 6097432 -236566921 - AluSx SINE Alu -18 294 1 380 298 8 0 chr1 6098483 6098607 -236565746 + MLT1K LTR MaLR 148 272 -316 180 383 148 9 chr1 6099285 6099400 -236564953 + L2 LINE L2 3142 3272 0 25 31 0 0 chr1 6100050 6100082 -236564271 + AT_rich Low_complexity Low_complexity 1 32 0 248 252 75 100 chr1 6100242 6100452 -236563901 - HAL1b LINE L1 -164 1184 970 2123 106 0 3 chr1 6100452 6100745 -236563608 + AluSx SINE Alu 1 292 -20 248 252 75 100 chr1 6100745 6100901 -236563452 - HAL1b LINE L1 -378 970 826 2032 122 10 19 chr1 6100901 6101213 -236563140 - AluSx SINE Alu -3 309 1 248 252 75 100 chr1 6101213 6101246 -236563107 - HAL1b LINE L1 -522 826 794 249 264 81 0 chr1 6101944 6102031 -236562322 - MIR SINE MIR -61 147 52 2266 94 0 3 chr1 6102582 6102880 -236561473 + AluSx SINE Alu 1 297 -15 34 55 0 0 chr1 6102916 6102971 -236561382 + AT_rich Low_complexity Low_complexity 1 55 0 2136 123 32 59 chr1 6103279 6103328 -236561025 - THE1B LTR MaLR 0 364 315 1943 107 3 31 chr1 6103328 6103515 -236560838 - AluSx SINE Alu 0 316 139 2264 73 3 10 chr1 6103515 6103815 -236560538 - AluY SINE Alu -13 298 1 1943 107 3 31 chr1 6103815 6103951 -236560402 - AluSx SINE Alu -177 139 1 2136 123 32 59 chr1 6103951 6104274 -236560079 - THE1B LTR MaLR -49 315 1 452 243 6 105 chr1 6104358 6104539 -236559814 - MLT1K LTR MaLR 0 588 426 907 199 21 16 chr1 6104563 6104749 -236559604 + MER53 DNA DNA 3 189 0 375 119 0 0 chr1 6105970 6106037 -236558316 + (GA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr1 6106456 6106476 -236557877 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 262 173 12 12 chr1 6106566 6106647 -236557706 + C-rich Low_complexity Low_complexity 3 83 0 323 250 113 8 chr1 6107073 6107197 -236557156 + MIR SINE MIR 16 152 -110 349 335 67 11 chr1 6107603 6107782 -236556571 - L2 LINE L2 -13 3259 3071 295 276 29 9 chr1 6107893 6107998 -236556355 + MIR3 SINE MIR 81 187 -21 515 186 0 17 chr1 6108646 6108764 -236555589 + CT-rich Low_complexity Low_complexity 1 116 0 1296 171 121 14 chr1 6109209 6109489 -236554864 + AluJb SINE Alu 1 310 -2 1753 147 65 73 chr1 6110053 6110421 -236553932 + MLT1A1 LTR MaLR 1 365 0 450 231 42 88 chr1 6110421 6110637 -236553716 - HAL1 LINE L1 -22 2485 2280 896 186 54 15 chr1 6110637 6110841 -236553512 + MIR SINE MIR 51 262 0 586 257 140 23 chr1 6110880 6111187 -236553166 - HAL1 LINE L1 -291 2216 1874 1617 83 41 0 chr1 6111187 6111405 -236552948 - AluSg SINE Alu -83 227 1 480 242 109 0 chr1 6112375 6112503 -236551850 + MLT1H LTR MaLR 408 549 0 314 311 196 5 chr1 6112675 6112884 -236551469 - L2 LINE L2 -477 2837 2589 1324 181 116 18 chr1 6112895 6113232 -236551121 - MLT1C LTR MaLR -92 375 6 646 295 72 0 chr1 6113626 6113819 -236550534 + MIR SINE MIR 50 256 -6 2014 133 0 3 chr1 6113997 6114291 -236550062 + AluSx SINE Alu 1 293 -19 228 281 0 0 chr1 6114415 6114472 -236549881 + L2 LINE L2 3214 3270 -2 250 319 119 38 chr1 6114781 6114966 -236549387 + L2 LINE L2 3114 3313 0 29 28 0 0 chr1 6115033 6115069 -236549284 + AT_rich Low_complexity Low_complexity 1 36 0 783 178 0 0 chr1 6115509 6115627 -236548726 + AluJb SINE Alu 1 118 -194 430 210 0 0 chr1 6115934 6116015 -236548338 - MIR SINE MIR -122 140 60 1552 120 0 4 chr1 6117148 6117373 -236546980 - AluSc SINE Alu -12 297 74 2362 74 3 3 chr1 6117373 6117683 -236546670 - AluY SINE Alu 0 311 1 971 187 0 65 chr1 6117690 6117920 -236546433 - AluJo SINE Alu -97 215 1 34 0 0 0 chr1 6118923 6118957 -236545396 + GC_rich Low_complexity Low_complexity 1 34 0 240 35 0 0 chr1 6118995 6119024 -236545329 + (CGGGG)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr1 6119146 6119176 -236545177 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr1 6119196 6119221 -236545132 + GC_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr1 6119244 6119286 -236545067 + GC_rich Low_complexity Low_complexity 1 42 0 226 281 16 16 chr1 6119318 6119446 -236544907 + G-rich Low_complexity Low_complexity 4 131 0 21 107 0 0 chr1 6119498 6119582 -236544771 + GC_rich Low_complexity Low_complexity 1 84 0 21 57 0 0 chr1 6119721 6119756 -236544597 + GC_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr1 6119802 6119838 -236544515 + GC_rich Low_complexity Low_complexity 1 36 0 273 259 0 0 chr1 6120053 6120200 -236544153 + (TG)n Simple_repeat Simple_repeat 2 148 0 438 176 0 0 chr1 6120227 6120346 -236544007 + (TG)n Simple_repeat Simple_repeat 2 120 0 369 230 0 0 chr1 6120403 6120581 -236543772 + (TG)n Simple_repeat Simple_repeat 1 178 0 369 102 0 0 chr1 6121390 6121449 -236542904 + (TG)n Simple_repeat Simple_repeat 1 59 0 331 329 153 0 chr1 6122397 6122567 -236541786 - MIR SINE MIR -39 223 28 205 315 0 0 chr1 6122718 6122772 -236541581 + (CA)n Simple_repeat Simple_repeat 1 54 0 243 188 0 0 chr1 6122790 6122838 -236541515 + (CA)n Simple_repeat Simple_repeat 2 49 0 11922 158 50 38 chr1 6123666 6124568 -236539785 + ERVL-B3 LTR ERVL 959 1849 -3915 744 94 0 0 chr1 6124568 6124674 -236539679 + (TGAA)n Simple_repeat Simple_repeat 4 109 0 11922 158 50 38 chr1 6124674 6125555 -236538798 + ERVL-B3 LTR ERVL 1849 2718 -3046 1695 153 0 59 chr1 6125555 6125667 -236538686 + AluJo SINE Alu 1 118 -194 189 0 0 0 chr1 6125667 6125688 -236538665 + (TC)n Simple_repeat Simple_repeat 2 22 0 2079 104 3 3 chr1 6125688 6125975 -236538378 - AluSq SINE Alu -24 289 3 1695 153 0 59 chr1 6125975 6126009 -236538344 + AluJo SINE Alu 116 301 -11 1133 151 0 6 chr1 6126009 6126181 -236538172 + AluJb SINE Alu 131 301 -11 11922 158 50 38 chr1 6126181 6127406 -236536947 + ERVL-B3 LTR ERVL 2718 4016 -1748 1812 121 39 39 chr1 6127406 6127711 -236536642 + AluJo SINE Alu 1 305 -7 11922 158 50 38 chr1 6127711 6128290 -236536063 + ERVL-B3 LTR ERVL 4016 4587 -1177 822 124 11 68 chr1 6128315 6128492 -236535861 + Ricksha DNA DNA 246 412 -1634 1110 182 120 8 chr1 6128591 6128849 -236535504 + MLT2B3 LTR ERVL 75 361 -193 6180 158 20 15 chr1 6128849 6130016 -236534337 + ERVL-B3 LTR ERVL 4593 5764 0 827 161 97 51 chr1 6130016 6130076 -236534277 + Ricksha DNA DNA 343 412 -842 2135 166 55 36 chr1 6130176 6130647 -236533706 + MLT2B3 LTR ERVL 75 554 0 1112 150 75 0 chr1 6130967 6131154 -236533199 - AluJo SINE Alu -107 205 5 214 281 132 83 chr1 6131595 6131716 -236532637 + L2 LINE L2 3146 3272 0 290 287 215 15 chr1 6131926 6132121 -236532232 - L2 LINE L2 0 3272 3039 467 262 152 42 chr1 6132682 6132873 -236531480 - MIR SINE MIR -40 222 11 2221 128 0 0 chr1 6133114 6133426 -236530927 - AluSx SINE Alu 0 312 1 1625 195 24 0 chr1 6133429 6133716 -236530637 - L1MB5 LINE L1 0 6174 5881 331 325 97 0 chr1 6134811 6134925 -236529428 - MIR SINE MIR -13 249 125 303 49 0 0 chr1 6135460 6135501 -236528852 + (GA)n Simple_repeat Simple_repeat 1 41 0 300 27 0 0 chr1 6135500 6135537 -236528816 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 1261 155 0 5 chr1 6135537 6135731 -236528622 - AluJo SINE Alu -33 279 87 2057 128 3 0 chr1 6135759 6136047 -236528306 + AluSx SINE Alu 1 289 -23 2030 135 0 10 chr1 6136609 6136913 -236527440 + AluJb SINE Alu 1 301 -11 21 0 0 0 chr1 6137359 6137380 -236526973 + AT_rich Low_complexity Low_complexity 1 21 0 255 198 55 44 chr1 6137584 6137675 -236526678 - L1MC5 LINE L1 -35 7926 7835 1331 122 19 158 chr1 6138214 6138525 -236525828 - AluJo SINE Alu -44 268 1 279 349 23 16 chr1 6138605 6138734 -236525619 - L1MB8 LINE L1 0 6178 6049 21 36 0 0 chr1 6138937 6138965 -236525388 + AT_rich Low_complexity Low_complexity 1 28 0 646 251 58 72 chr1 6139172 6139315 -236525038 - MIR SINE MIR -11 251 108 2047 93 0 11 chr1 6139315 6139595 -236524758 + AluSq SINE Alu 3 279 -34 646 251 58 72 chr1 6139595 6139608 -236524745 - MIR SINE MIR -154 108 96 240 35 0 0 chr1 6139608 6139637 -236524716 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 646 251 58 72 chr1 6139637 6139702 -236524651 - MIR SINE MIR -166 96 32 205 269 0 0 chr1 6139968 6140020 -236524333 + L2 LINE L2 3221 3272 0 2268 113 0 0 chr1 6140092 6140402 -236523951 + AluSx SINE Alu 1 310 -2 266 376 42 30 chr1 6141548 6141713 -236522640 - MIR SINE MIR 0 262 96 234 0 0 0 chr1 6142065 6142091 -236522262 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 239 234 0 0 chr1 6142577 6142624 -236521729 + (TG)n Simple_repeat Simple_repeat 2 48 0 273 276 95 0 chr1 6143007 6143112 -236521241 + MIR SINE MIR 45 159 -103 251 273 22 65 chr1 6143384 6143523 -236520830 - L2 LINE L2 -205 3067 2935 1420 170 50 47 chr1 6143681 6143981 -236520372 - AluJb SINE Alu -11 301 1 21 0 0 0 chr1 6144034 6144055 -236520298 + AT_rich Low_complexity Low_complexity 1 21 0 359 252 165 8 chr1 6144712 6144839 -236519514 + MIR SINE MIR 41 187 -75 255 328 115 16 chr1 6144940 6145062 -236519291 - L2 LINE L2 -43 3229 3096 1894 108 46 29 chr1 6145106 6145412 -236518941 + AluSx SINE Alu 1 311 -1 218 57 0 75 chr1 6145587 6145640 -236518713 + (TCC)n Simple_repeat Simple_repeat 1 49 0 367 241 24 0 chr1 6146385 6146468 -236517885 - L2 LINE L2 -5 3308 3224 188 379 0 0 chr1 6147685 6147751 -236516602 - L2 LINE L2 -9 3263 3198 341 267 114 8 chr1 6147809 6147940 -236516413 - MER104 DNA Tc2 -3 177 33 537 284 129 10 chr1 6148388 6148589 -236515764 - MIR SINE MIR -14 248 24 866 287 122 26 chr1 6151766 6152191 -236512162 - L2 LINE L2 -3 3310 2845 302 248 23 53 chr1 6153433 6153566 -236510787 + Charlie7 DNA MER1_type 2437 2565 -47 1061 211 72 0 chr1 6153897 6154106 -236510247 - MER58A DNA MER1_type 0 224 1 428 206 28 9 chr1 6154533 6154640 -236509713 + MER103 DNA DNA 17 125 -41 273 356 22 37 chr1 6154709 6154844 -236509509 - MIR3 SINE MIR -41 167 35 626 195 86 104 chr1 6154977 6155198 -236509155 - MER20 DNA MER1_type -2 217 1 247 218 0 36 chr1 6155478 6155533 -236508820 + (TGGG)n Simple_repeat Simple_repeat 3 55 0 1446 122 22 0 chr1 6155699 6155921 -236508432 + AluSg/x SINE Alu 86 312 0 2031 85 32 21 chr1 6156384 6156695 -236507658 + AluSq SINE Alu 1 314 0 515 170 28 19 chr1 6156908 6157014 -236507339 - L1MB3 LINE L1 0 6183 6077 586 157 25 33 chr1 6157020 6157141 -236507212 - L1MB3 LINE L1 -588 5595 5476 464 339 107 61 chr1 6157307 6157517 -236506836 - L1ME3 LINE L1 -294 5868 5669 2240 106 3 3 chr1 6157517 6157829 -236506524 - AluSq SINE Alu -1 312 1 464 339 107 61 chr1 6157829 6158143 -236506210 - L1ME3 LINE L1 -493 5669 5320 876 125 0 22 chr1 6158266 6158402 -236505951 + FLAM_C SINE Alu 1 133 0 2372 92 0 0 chr1 6159524 6159829 -236504524 - AluSx SINE Alu -7 305 1 2250 106 0 0 chr1 6160282 6160584 -236503769 - AluSx SINE Alu -10 302 1 1099 82 0 0 chr1 6160584 6160719 -236503634 - AluSq/x SINE Alu -178 135 1 2848 158 16 60 chr1 6160719 6161339 -236503014 - L1MB3 LINE L1 -33 6150 5558 2214 117 0 0 chr1 6161418 6161716 -236502637 + AluSx SINE Alu 1 298 -14 1760 149 30 27 chr1 6161725 6162026 -236502327 + AluJb SINE Alu 1 302 -10 2293 95 7 0 chr1 6162418 6162724 -236501629 - AluSp SINE Alu -5 308 1 256 276 0 40 chr1 6166224 6166300 -236498053 - MER5A DNA MER1_type -75 114 42 247 250 25 25 chr1 6167573 6167653 -236496700 + L2 LINE L2 3155 3234 -79 2379 74 3 0 chr1 6167901 6168200 -236496153 - AluSp SINE Alu -13 300 1 2195 159 24 58 chr1 6169273 6169725 -236494628 - L1MB5 LINE L1 0 6174 5738 2457 56 0 10 chr1 6169981 6170286 -236494067 - AluY SINE Alu -9 302 1 729 207 103 23 chr1 6170386 6170560 -236493793 - MER5A DNA MER1_type 0 189 2 813 165 0 8 chr1 6173234 6173367 -236490986 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 6173591 6173891 -236490462 - L1MC4a LINE L1 -6 6115 5784 2353 75 0 0 chr1 6174142 6174436 -236489917 - AluSx SINE Alu -11 301 8 381 131 0 0 chr1 6175136 6175197 -236489156 + (TG)n Simple_repeat Simple_repeat 2 62 0 444 201 17 17 chr1 6176136 6176315 -236488038 + (CA)n Simple_repeat Simple_repeat 2 180 0 247 274 16 0 chr1 6176764 6176826 -236487527 + (TG)n Simple_repeat Simple_repeat 1 63 0 622 164 0 0 chr1 6177279 6177383 -236486970 + MER58A DNA MER1_type 3 106 -1 342 209 0 0 chr1 6177383 6177441 -236486912 + MER58A DNA MER1_type 167 224 0 597 220 162 0 chr1 6178597 6178770 -236485583 + MER58A DNA MER1_type 12 212 -12 245 217 0 43 chr1 6178833 6178902 -236485451 + C-rich Low_complexity Low_complexity 1 66 0 217 293 0 27 chr1 6179000 6179075 -236485278 + C-rich Low_complexity Low_complexity 2 74 0 2147 97 7 0 chr1 6179836 6180134 -236484219 + AluSq SINE Alu 1 300 -13 1934 75 47 0 chr1 6180759 6181013 -236483340 + AluSx SINE Alu 31 296 -16 508 185 32 0 chr1 6182987 6183144 -236481209 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 227 156 67 0 chr1 6183161 6183206 -236481147 + (TGGG)n Simple_repeat Simple_repeat 3 50 0 1167 178 0 3 chr1 6183214 6183572 -236480781 + (TGGA)n Simple_repeat Simple_repeat 3 358 0 2331 97 0 0 chr1 6185620 6185920 -236478433 + AluSg SINE Alu 1 300 -10 883 296 259 10 chr1 6185922 6186618 -236477735 - L2 LINE L2 -619 2695 1827 1197 257 97 12 chr1 6186626 6187050 -236477303 - MLT1C LTR MaLR -1 466 7 1011 96 0 15 chr1 6187366 6187501 -236476852 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr1 6188379 6188409 -236475944 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 194 241 35 17 chr1 6189712 6189770 -236474583 + MIR SINE MIR 88 146 -62 2095 125 3 3 chr1 6189902 6190198 -236474155 - AluSx SINE Alu -16 296 1 278 365 19 0 chr1 6190576 6190683 -236473670 - MIR3 SINE MIR -26 182 74 2021 110 0 46 chr1 6190988 6191355 -236472998 - AluSx SINE Alu 0 312 1 1518 156 130 7 chr1 6191355 6191615 -236472738 - AluJo SINE Alu -6 296 1 716 189 86 0 chr1 6191682 6191857 -236472496 - L1MB8 LINE L1 0 6178 5989 405 300 73 13 chr1 6192661 6192773 -236471580 + MIR SINE MIR 2 127 -135 2218 104 7 0 chr1 6192773 6193072 -236471281 - AluSx SINE Alu -11 301 1 405 300 73 13 chr1 6193072 6193109 -236471244 + MIR SINE MIR 127 160 -102 582 217 12 103 chr1 6193222 6193430 -236470923 + MIR SINE MIR 10 193 -62 192 77 0 0 chr1 6195353 6195379 -236468974 + (TA)n Simple_repeat Simple_repeat 2 27 0 453 295 36 24 chr1 6196623 6196789 -236467564 + MER5A DNA MER1_type 21 188 -1 2219 69 0 14 chr1 6197122 6197412 -236466941 + AluSc SINE Alu 4 289 -20 1632 174 27 7 chr1 6199791 6200084 -236464269 - L1MB5 LINE L1 -2 6172 5874 409 255 51 51 chr1 6200126 6200283 -236464070 + MIR SINE MIR 105 261 -1 1020 238 114 76 chr1 6200530 6200691 -236463662 - MLT1D LTR MaLR 0 505 352 1919 137 0 64 chr1 6200691 6201020 -236463333 + AluSx SINE Alu 1 308 -4 1020 238 114 76 chr1 6201020 6201318 -236463035 - MLT1D LTR MaLR -153 352 28 2630 102 24 0 chr1 6201318 6201728 -236462625 + MER83 LTR ERV1 1 420 -28 205 346 0 26 chr1 6203925 6204003 -236460350 + MIR SINE MIR 117 192 -70 2096 120 3 0 chr1 6204057 6204357 -236459996 - AluSq SINE Alu -12 301 1 300 137 0 0 chr1 6204885 6204936 -236459417 + (TCC)n Simple_repeat Simple_repeat 2 52 0 1613 164 72 10 chr1 6204936 6205228 -236459125 - AluSg SINE Alu 0 310 1 34 0 0 0 chr1 6205233 6205267 -236459086 + AT_rich Low_complexity Low_complexity 1 34 0 1851 138 3 3 chr1 6205315 6205765 -236458588 - AluJb SINE Alu 0 450 1 211 147 0 0 chr1 6206049 6206083 -236458270 - MIR SINE MIR -28 234 201 2034 119 3 28 chr1 6206322 6206642 -236457711 - AluSx SINE Alu 0 312 1 1646 140 37 34 chr1 6206643 6206965 -236457388 - THE1B LTR MaLR -41 323 1 407 243 6 105 chr1 6207049 6207230 -236457123 - MLT1K LTR MaLR 0 588 426 905 199 21 16 chr1 6207254 6207440 -236456913 + MER53 DNA DNA 3 189 0 300 127 0 0 chr1 6208661 6208716 -236455637 + (GA)n Simple_repeat Simple_repeat 1 55 0 192 286 79 0 chr1 6209512 6209609 -236454744 + MIR SINE MIR 64 165 -86 453 267 215 0 chr1 6209650 6209822 -236454531 - MIR SINE MIR -50 212 4 236 210 12 111 chr1 6210017 6210080 -236454273 + L2 LINE L2 3239 3294 -19 2041 131 0 7 chr1 6210080 6210377 -236453976 + AluSx SINE Alu 1 295 -17 236 210 12 111 chr1 6210377 6210394 -236453959 + L2 LINE L2 3294 3311 -2 2202 97 0 3 chr1 6210489 6210779 -236453574 + AluSq SINE Alu 1 289 -24 262 343 73 7 chr1 6211655 6211792 -236452561 - MIR SINE MIR -15 247 102 258 160 0 0 chr1 6212209 6212259 -236452094 + AluJb SINE Alu 87 136 -166 1917 136 10 3 chr1 6212259 6212553 -236451800 + AluJb SINE Alu 1 296 -16 194 241 35 17 chr1 6212685 6212743 -236451610 - MIR SINE MIR -62 146 88 207 100 0 0 chr1 6214046 6214076 -236450277 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1012 96 0 15 chr1 6214954 6215123 -236449230 + FLAM_C SINE Alu 1 167 0 1181 259 97 12 chr1 6215424 6215848 -236448505 + MLT1C LTR MaLR 7 466 -1 508 283 337 4 chr1 6215856 6216322 -236448031 + L2 LINE L2 1827 2447 -867 813 165 0 8 chr1 6217268 6217401 -236446952 + FLAM_C SINE Alu 1 132 -1 320 330 160 53 chr1 6217625 6217925 -236446428 - L1MC4a LINE L1 -6 6115 5784 2109 63 0 0 chr1 6218216 6218471 -236445882 - AluY SINE Alu -56 255 1 742 112 0 8 chr1 6218496 6218621 -236445732 - MER4A LTR ERV1 -540 124 1 385 156 0 0 chr1 6218621 6218684 -236445669 - MER4E LTR ERV1 -716 63 1 271 267 58 0 chr1 6218840 6218926 -236445427 + MIR SINE MIR 61 151 -57 509 277 45 28 chr1 6219322 6219499 -236444854 + MIR SINE MIR 13 192 -70 2195 111 0 16 chr1 6219649 6219964 -236444389 - AluSx SINE Alu -2 310 1 1955 151 17 0 chr1 6220710 6221009 -236443344 + AluSx SINE Alu 1 304 -8 238 214 0 119 chr1 6221620 6221704 -236442649 - MER91 DNA MER1_type 0 140 67 2092 138 0 3 chr1 6222199 6222510 -236441843 + AluSx SINE Alu 1 310 -2 188 180 0 80 chr1 6223577 6223627 -236440726 - L2 LINE L2 -3 3310 3265 425 130 29 0 chr1 6223679 6223748 -236440605 + AluJ/FLAM SINE Alu 6 76 -236 1971 133 3 3 chr1 6424122 6424415 -236239938 + AluSx SINE Alu 1 293 -19 2244 120 8 6 chr1 6425879 6426237 -236238116 + THE1B LTR MaLR 1 359 -5 1717 181 7 0 chr1 6426325 6426617 -236237736 + AluJb SINE Alu 1 294 -18 1467 166 61 32 chr1 6427570 6427914 -236236439 + MLT1A1 LTR MaLR 1 354 -11 950 263 106 64 chr1 6427929 6428317 -236236036 + MLT1K LTR MaLR 4 415 -61 1935 144 0 10 chr1 6428317 6428615 -236235738 - AluJo SINE Alu -5 307 13 950 263 106 64 chr1 6428615 6428678 -236235675 + MLT1K LTR MaLR 415 474 -2 463 199 130 15 chr1 6428967 6429098 -236235255 + MER112 DNA MER1_type 2 147 -113 202 339 51 34 chr1 6429110 6429228 -236235125 - MIR3 SINE MIR -40 168 49 916 175 12 18 chr1 6430431 6430593 -236233760 - AluJo/FRAM SINE Alu -14 298 136 2003 156 0 0 chr1 6430593 6430894 -236233459 - AluJb SINE Alu -11 301 1 1885 124 4 4 chr1 6431282 6431555 -236232798 + AluJb SINE Alu 17 289 -23 2278 93 3 0 chr1 6431759 6432059 -236232294 + AluSg SINE Alu 1 301 -9 44 46 0 0 chr1 6433369 6433434 -236230919 + GC_rich Low_complexity Low_complexity 1 65 0 200 214 18 0 chr1 6434783 6434839 -236229514 + (TG)n Simple_repeat Simple_repeat 2 58 0 1647 200 0 3 chr1 6436933 6437233 -236227120 + AluJb SINE Alu 1 299 -13 2361 82 7 3 chr1 6437387 6437693 -236226660 + AluSq SINE Alu 1 307 -6 1982 123 0 0 chr1 6438374 6438690 -236225663 - AluSq SINE Alu 0 316 1 212 200 0 62 chr1 6438908 6438973 -236225380 + MIR3 SINE MIR 110 170 -38 244 329 98 18 chr1 6439599 6439763 -236224590 + MIR3 SINE MIR 26 202 -6 422 18 18 0 chr1 6439890 6439945 -236224408 + (CA)n Simple_repeat Simple_repeat 2 57 0 274 296 74 9 chr1 6440586 6440694 -236223659 - MIR SINE MIR -78 130 16 291 225 0 2 chr1 6442615 6442679 -236221674 + MIR SINE MIR 85 140 -68 297 159 76 53 chr1 6442934 6443066 -236221287 - LTR33 LTR ERVL -365 156 22 355 307 60 13 chr1 6443311 6443461 -236220892 + L2 LINE L2 3116 3272 0 2047 129 7 0 chr1 6443915 6444218 -236220135 - AluSx SINE Alu -3 309 5 270 319 69 8 chr1 6444735 6444908 -236219445 + MIR SINE MIR 30 222 -40 234 357 13 58 chr1 6445305 6445459 -236218894 - L2 LINE L2 0 3313 3167 2015 112 18 0 chr1 6445998 6446314 -236218039 + AluSx SINE Alu 1 312 0 695 318 57 48 chr1 6446341 6447004 -236217349 - L2 LINE L2 -4 3309 2624 334 271 199 0 chr1 6447174 6447325 -236217028 - L2 LINE L2 -685 2629 2449 240 277 213 0 chr1 6448456 6448550 -236215803 - L2 LINE L2 -2 3311 3198 22 0 0 0 chr1 6452080 6452102 -236212251 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr1 6452424 6452446 -236211907 + (CAG)n Simple_repeat Simple_repeat 1 22 0 292 240 170 10 chr1 6452724 6452824 -236211529 + L2 LINE L2 3154 3269 -3 195 270 60 20 chr1 6452882 6452982 -236211371 - L2 LINE L2 -221 3051 2948 2343 64 0 35 chr1 6454452 6454765 -236209588 + AluY SINE Alu 1 302 -9 845 240 77 56 chr1 6455929 6456321 -236208032 - MLT1C LTR MaLR -9 458 59 1450 347 93 20 chr1 6457665 6458912 -236205441 - L2 LINE L2 -1 3312 1965 206 321 95 0 chr1 6458910 6459019 -236205334 - L2 LINE L2 -322 2991 2873 * 2181 109 20 0 chr1 6459574 6459878 -236204475 - AluSx SINE Alu -2 310 1 2120 116 0 16 chr1 6460715 6461018 -236203335 + AluSq SINE Alu 1 298 -15 2098 110 7 17 chr1 6461027 6461328 -236203025 + AluJb SINE Alu 1 298 -14 264 308 165 0 chr1 6461400 6461533 -236202820 - MIR3 SINE MIR -51 157 3 2217 90 0 17 chr1 6461615 6461915 -236202438 + AluSq SINE Alu 5 299 -14 214 275 50 12 chr1 6462502 6462582 -236201771 - MIR SINE MIR -174 88 6 560 336 152 15 chr1 6462666 6463266 -236201087 - L2 LINE L2 -2 3270 2585 189 74 0 0 chr1 6463475 6463502 -236200851 + (GA)n Simple_repeat Simple_repeat 2 28 0 231 291 107 0 chr1 6463585 6463688 -236200665 + L2 LINE L2 3158 3271 -1 354 98 0 0 chr1 6463688 6463739 -236200614 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 216 149 0 0 chr1 6464234 6464281 -236200072 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 2180 131 50 34 chr1 6464802 6465160 -236199193 - THE1B LTR MaLR 0 364 1 1390 224 82 10 chr1 6465230 6465622 -236198731 - MER77 LTR ERV1 -7 598 179 308 188 0 31 chr1 6465802 6465866 -236198487 - MER77 LTR ERV1 -490 115 54 2112 113 7 3 chr1 6467968 6468277 -236196076 - AluSg SINE Alu 0 310 1 23 0 0 0 chr1 6468279 6468302 -236196051 + AT_rich Low_complexity Low_complexity 1 23 0 356 319 125 37 chr1 6469031 6469247 -236195106 - MIR SINE MIR -19 243 9 236 296 23 23 chr1 6469657 6469745 -236194608 - MLT1H LTR MaLR -8 541 454 1526 130 18 0 chr1 6469963 6470186 -236194167 + MER30 DNA MER1_type 4 230 0 320 229 38 61 chr1 6470191 6470322 -236194031 - MIR3 SINE MIR -51 157 30 434 167 78 0 chr1 6470894 6470984 -236193369 - L1MB8 LINE L1 -7 6171 6075 1150 176 90 61 chr1 6472066 6472257 -236192096 - AluJb SINE Alu -9 303 99 1891 128 29 0 chr1 6472257 6472551 -236191802 + AluSq SINE Alu 1 302 0 1150 176 90 61 chr1 6472551 6472636 -236191717 - AluJb SINE Alu -213 99 18 483 212 62 0 chr1 6472636 6472749 -236191604 + MIR SINE MIR 45 164 -98 277 153 176 0 chr1 6473065 6473196 -236191157 - AluSg/x SINE Alu 0 300 147 2404 169 25 20 chr1 6473296 6474243 -236190110 - L1MB8 LINE L1 -255 5923 4864 1009 220 118 58 chr1 6474400 6474782 -236189571 - MLT1I LTR MaLR -2 407 3 509 184 0 0 chr1 6474887 6474974 -236189379 + AluJb SINE Alu 210 296 -16 246 372 0 0 chr1 6475081 6475167 -236189186 + MIR SINE MIR 56 141 -121 2010 131 13 29 chr1 6475344 6475650 -236188703 - AluJb SINE Alu -11 301 1 198 0 0 0 chr1 6476262 6476284 -236188069 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 192 226 0 65 chr1 6476479 6476541 -236187812 - L2 LINE L2 -8 3264 3207 624 190 114 16 chr1 6477104 6477288 -236187065 - HAL1 LINE L1 -651 1856 1655 647 293 111 91 chr1 6477312 6477698 -236186655 + HAL1 LINE L1 142 535 -1972 232 253 41 75 chr1 6477702 6477848 -236186505 - HAL1 LINE L1 -379 2128 1988 253 253 23 11 chr1 6477882 6477969 -236186384 - MIR SINE MIR -2 260 173 2744 207 16 0 chr1 6478503 6479048 -236185305 + L1MA8 LINE L1 5620 6173 -118 448 200 36 9 chr1 6479104 6479214 -236185139 + L1MA8 LINE L1 6177 6289 -2 1932 133 66 3 chr1 6479219 6479505 -236184848 + AluJb SINE Alu 1 304 -8 383 319 0 9 chr1 6479680 6479796 -236184557 - L2 LINE L2 -2 3270 3156 190 284 15 15 chr1 6479895 6479962 -236184391 + L2 LINE L2 3186 3252 -20 2025 125 3 3 chr1 6480310 6480599 -236183754 - AluSx SINE Alu -10 302 14 2228 121 3 0 chr1 6482125 6482431 -236181922 - AluSx SINE Alu 0 312 6 233 173 269 0 chr1 6482845 6482897 -236181456 - L2 LINE L2 -57 3256 3191 499 298 129 0 chr1 6482988 6483213 -236181140 + MIR SINE MIR 9 262 0 406 117 0 0 chr1 6483480 6483540 -236180813 - Alu SINE Alu -9 301 242 1004 102 0 0 chr1 6483540 6483667 -236180686 - AluSq/x SINE Alu -183 129 3 787 139 0 31 chr1 6484557 6484686 -236179667 + FLAM_C SINE Alu 2 126 -7 3229 200 141 93 chr1 6484693 6485251 -236179102 + L1MC3 LINE L1 6500 7030 -755 308 286 24 0 chr1 6485251 6485335 -236179018 + MLT1F1 LTR MaLR 35 120 -447 3229 200 141 93 chr1 6485335 6485575 -236178778 + L1MC3 LINE L1 7030 7257 -528 2160 107 3 27 chr1 6485575 6485874 -236178479 - AluSx SINE Alu -20 292 1 3229 200 141 93 chr1 6485874 6486215 -236178138 + L1MC3 LINE L1 7257 7782 -3 2289 73 45 0 chr1 6486306 6486593 -236177760 + AluY SINE Alu 1 300 -11 456 200 119 31 chr1 6486598 6486773 -236177580 - MIR SINE MIR -60 202 13 738 177 152 0 chr1 6487419 6487583 -236176770 + MER5A DNA MER1_type 1 189 0 2657 47 0 0 chr1 6488877 6489177 -236175176 - AluY SINE Alu -11 300 1 246 182 141 81 chr1 6489245 6489344 -236175009 + L2 LINE L2 3209 3313 0 2191 113 13 10 chr1 6490870 6491171 -236173182 - AluSx SINE Alu -10 302 1 578 262 14 7 chr1 6491438 6491583 -236172770 + MIR SINE MIR 107 252 -10 415 224 27 61 chr1 6491882 6492029 -236172324 - MIR SINE MIR -86 176 35 209 273 198 17 chr1 6492047 6492219 -236172134 + L2 LINE L2 2838 3040 -273 2140 108 3 11 chr1 6492370 6492657 -236171696 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr1 6492664 6492685 -236171668 + (TC)n Simple_repeat Simple_repeat 2 22 0 258 130 14 29 chr1 6492685 6492754 -236171599 + (TA)n Simple_repeat Simple_repeat 2 69 0 2261 126 0 0 chr1 6493047 6493356 -236170997 + AluSg SINE Alu 1 309 -1 1545 158 68 32 chr1 6493359 6493637 -236170716 + AluJb SINE Alu 1 288 -24 22 35 0 0 chr1 6493831 6493860 -236170493 + AT_rich Low_complexity Low_complexity 1 29 0 1932 159 0 25 chr1 6494667 6494981 -236169372 + AluJb SINE Alu 1 306 -6 2213 104 7 0 chr1 6495705 6496002 -236168351 - AluSx SINE Alu -13 299 1 840 119 8 2 chr1 6496971 6497228 -236167125 + AluSx SINE Alu 1 307 -2 1979 136 7 16 chr1 6497520 6497830 -236166523 - AluJb SINE Alu -5 307 1 875 131 46 0 chr1 6497830 6497960 -236166393 - AluJo SINE Alu -176 136 1 2224 130 33 28 chr1 6501233 6501594 -236162759 - THE1B LTR MaLR -1 363 1 592 65 26 0 chr1 6501613 6501690 -236162663 - THE1B LTR MaLR -285 79 1 618 89 0 0 chr1 6501709 6501788 -236162565 - THE1B LTR MaLR -285 79 1 621 76 0 0 chr1 6501807 6501886 -236162467 - THE1B LTR MaLR -285 79 1 848 241 46 9 chr1 6501945 6502161 -236162192 - MER58A DNA MER1_type 0 224 1 331 172 0 0 chr1 6502446 6502504 -236161849 + Charlie5 DNA MER1_type 51 108 -2504 2494 55 3 0 chr1 6503037 6503330 -236161023 + AluY SINE Alu 1 294 -17 1691 113 0 17 chr1 6503368 6503608 -236160745 + AluSq SINE Alu 1 236 -77 633 112 0 0 chr1 6503608 6503691 -236160662 - AluY SINE Alu -227 84 2 25 0 0 0 chr1 6503700 6503725 -236160628 + AT_rich Low_complexity Low_complexity 1 25 0 202 270 0 34 chr1 6503759 6503848 -236160505 + A-rich Low_complexity Low_complexity 5 90 0 205 216 0 0 chr1 6503868 6503905 -236160448 + (TA)n Simple_repeat Simple_repeat 1 37 0 206 164 15 45 chr1 6504112 6504179 -236160174 + (TA)n Simple_repeat Simple_repeat 1 65 0 1734 136 0 79 chr1 6504593 6504909 -236159444 - AluSx SINE Alu -21 291 1 25 31 0 0 chr1 6504910 6504942 -236159411 + AT_rich Low_complexity Low_complexity 1 32 0 235 132 0 0 chr1 6505005 6505043 -236159310 - L1MB7 LINE L1 -9 6175 6138 1032 269 70 18 chr1 6505070 6505420 -236158933 - L1MB8 LINE L1 -1 6177 5808 2603 64 0 3 chr1 6505570 6505882 -236158471 - AluY SINE Alu 0 311 1 2376 102 0 0 chr1 6505884 6506187 -236158166 - AluSx SINE Alu -9 303 1 203 254 0 18 chr1 6506521 6506576 -236157777 + L3 LINE CR1 1517 1570 -7 2330 97 3 3 chr1 6506999 6507298 -236157055 + AluSx SINE Alu 1 299 -13 782 196 0 0 chr1 6508042 6508180 -236156173 - L1MB4 LINE L1 -7 6173 6036 2216 112 3 10 chr1 6508389 6508692 -236155661 - AluSx SINE Alu -11 301 1 2384 88 3 0 chr1 6509662 6509967 -236154386 - AluSx SINE Alu -6 306 1 315 0 0 0 chr1 6509994 6510029 -236154324 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 487 205 116 9 chr1 6510039 6510151 -236154202 + FLAM_A SINE Alu 1 124 -9 294 249 31 0 chr1 6510685 6510773 -236153580 - MIR SINE MIR -65 143 101 1629 102 16 20 chr1 6513458 6513702 -236150651 - MER75B DNA T2_type 0 243 1 2463 91 0 3 chr1 6516799 6517108 -236147245 + AluSx SINE Alu 1 308 -4 1841 160 4 0 chr1 6518322 6518631 -236145722 + AluJo SINE Alu 1 310 0 22 56 0 0 chr1 6518653 6518689 -236145664 + AT_rich Low_complexity Low_complexity 1 36 0 1120 221 18 9 chr1 6518947 6519164 -236145189 - MER58A DNA MER1_type 0 224 6 1856 92 114 7 chr1 6519240 6519511 -236144842 + AluSg SINE Alu 1 300 -10 2629 46 0 0 chr1 6520409 6520711 -236143642 + AluY SINE Alu 1 302 -9 764 145 17 0 chr1 6520787 6520930 -236143423 + AluJb SINE Alu 164 308 0 1416 183 8 12 chr1 6523638 6523889 -236140464 + AluJo SINE Alu 15 264 -48 463 331 97 6 chr1 6524783 6524958 -236139395 + MIR SINE MIR 17 207 -55 24 0 0 0 chr1 6525957 6525981 -236138372 + AT_rich Low_complexity Low_complexity 1 24 0 2357 94 0 3 chr1 6526432 6526729 -236137624 + AluSx SINE Alu 1 296 -16 2509 57 3 3 chr1 6527501 6527801 -236136552 + AluY SINE Alu 1 300 -11 300 111 0 0 chr1 6528332 6528377 -236135976 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr1 6528808 6528831 -236135522 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1 6529708 6529731 -236134622 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 22 29 chr1 6532924 6533060 -236131293 + (CCCCG)n Simple_repeat Simple_repeat 4 138 0 313 275 176 6 chr1 6533820 6534002 -236130351 + MIR SINE MIR 2 214 -48 2288 102 3 3 chr1 6534362 6534667 -236129686 + AluSq SINE Alu 1 305 -8 4293 181 55 8 chr1 6536148 6537094 -236127259 - L1MB5 LINE L1 0 6174 5151 2229 110 3 3 chr1 6537094 6537404 -236126949 - AluSq SINE Alu -3 310 1 4293 181 55 8 chr1 6537404 6537857 -236126496 - L1MB5 LINE L1 -1023 5151 4721 2685 201 42 8 chr1 6537858 6538471 -236125882 - L1MB5 LINE L1 -1576 4570 3937 2080 116 0 14 chr1 6538572 6538866 -236125487 - AluSx SINE Alu -22 290 1 1659 134 119 11 chr1 6540036 6540305 -236124048 + AluJo SINE Alu 1 298 -14 614 231 139 24 chr1 6540472 6540617 -236123736 + MIR SINE MIR 5 132 -130 189 0 0 0 chr1 6540617 6540638 -236123715 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 614 231 139 24 chr1 6540638 6540669 -236123684 + MIR SINE MIR 132 158 -104 2543 71 0 0 chr1 6540669 6540980 -236123373 + AluY SINE Alu 1 311 0 614 231 139 24 chr1 6540980 6541010 -236123343 + MIR SINE MIR 158 236 -26 210 305 57 9 chr1 6543718 6543823 -236120530 + L2 LINE L2 2772 2881 -433 256 271 146 58 chr1 6544074 6544403 -236119950 + L2 LINE L2 2953 3310 -3 1711 161 28 14 chr1 6544789 6545080 -236119273 + AluSx SINE Alu 1 295 -17 437 250 33 33 chr1 6545408 6545588 -236118765 + C-rich Low_complexity Low_complexity 1 180 0 23 0 0 0 chr1 6545877 6545900 -236118453 + GC_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr1 6545992 6546042 -236118311 + GC_rich Low_complexity Low_complexity 1 50 0 210 248 0 40 chr1 6546073 6546174 -236118179 + (CGGG)n Simple_repeat Simple_repeat 4 100 0 2491 45 3 0 chr1 6547730 6548017 -236116336 + AluY SINE Alu 1 288 -23 2149 116 3 16 chr1 6550377 6550680 -236113673 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr1 6550890 6550914 -236113439 + AT_rich Low_complexity Low_complexity 1 24 0 537 184 43 43 chr1 6550961 6550996 -236113357 - L1MB2 LINE L1 -5 6166 6132 2425 116 11 27 chr1 6550996 6551366 -236112987 + THE1B LTR MaLR 1 364 0 537 184 43 43 chr1 6551366 6551471 -236112882 - L1MB2 LINE L1 -38 6133 6026 200 360 47 0 chr1 6551727 6551813 -236112540 - L2 LINE L2 -5 3267 3178 2655 91 19 16 chr1 6551927 6552301 -236112052 - THE1C LTR MaLR 0 375 1 10315 112 39 9 chr1 6552301 6553835 -236110518 - THE1C-int LTR MaLR 0 1580 1 2634 77 41 6 chr1 6553835 6554197 -236110156 - THE1C LTR MaLR 0 375 1 2211 106 0 20 chr1 6555962 6556265 -236108088 + AluSc SINE Alu 1 297 -12 23 33 0 0 chr1 6556403 6556433 -236107920 + AT_rich Low_complexity Low_complexity 1 30 0 251 233 0 22 chr1 6556602 6556692 -236107661 + (TTATA)n Simple_repeat Simple_repeat 3 90 0 653 270 101 50 chr1 6556987 6557431 -236106922 - L2 LINE L2 -10 3303 2837 351 294 8 84 chr1 6557500 6557738 -236106615 - L1MC5 LINE L1 -33 7928 7709 1111 245 21 24 chr1 6557768 6558058 -236106295 - L1MC4 LINE L1 -1051 6991 6703 2158 123 13 0 chr1 6558070 6558370 -236105983 - AluSx SINE Alu -8 304 1 239 235 37 0 chr1 6558402 6558483 -236105870 - L2 LINE L2 -626 2688 2605 310 29 0 0 chr1 6558538 6558573 -236105780 - U2 snRNA snRNA -153 35 1 720 282 115 27 chr1 6558573 6558903 -236105450 - L2 LINE L2 -769 2545 2187 340 308 121 26 chr1 6558906 6559108 -236105245 - L2 LINE L2 -1791 1523 1287 2465 87 0 3 chr1 6559108 6559417 -236104936 + AluSx SINE Alu 1 308 -4 340 308 121 26 chr1 6559417 6559487 -236104866 - L2 LINE L2 -2027 1287 1225 2428 68 7 23 chr1 6561079 6561386 -236102967 + AluSq SINE Alu 2 303 -10 1826 156 3 29 chr1 6561515 6561823 -236102530 - AluJo SINE Alu -2 310 11 2035 93 57 4 chr1 6561972 6562252 -236102101 - AluSx SINE Alu -16 296 2 1252 122 0 0 chr1 6562435 6562607 -236101746 + AluSg/x SINE Alu 136 307 -5 23 0 0 0 chr1 6563099 6563122 -236101231 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr1 6563695 6563720 -236100633 + AT_rich Low_complexity Low_complexity 1 25 0 2292 109 0 7 chr1 6564017 6564320 -236100033 - AluSx SINE Alu -11 301 1 462 293 27 14 chr1 6564465 6564612 -236099741 - MER5A DNA MER1_type -23 166 18 2147 118 3 0 chr1 6565062 6565351 -236099002 + AluSx SINE Alu 1 290 -22 250 249 135 21 chr1 6565884 6566077 -236098276 + L1ME4a LINE L1 5842 6056 -65 1819 159 3 10 chr1 6566154 6566455 -236097898 - AluJb SINE Alu -11 301 3 2202 116 3 0 chr1 6566629 6566923 -236097430 - AluSx SINE Alu -17 295 1 312 333 76 8 chr1 6567746 6567878 -236096475 - L2 LINE L2 -2 3311 3171 1981 131 0 27 chr1 6568272 6568569 -236095784 + AluJo SINE Alu 12 300 -12 233 160 0 20 chr1 6568570 6568620 -236095733 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 576 285 21 11 chr1 6568796 6568982 -236095371 - L2 LINE L2 0 3313 3126 339 294 87 33 chr1 6569270 6569454 -236094899 + MIR SINE MIR 7 200 -62 181 264 36 55 chr1 6569507 6569617 -236094736 + MIR SINE MIR 2 109 -153 2448 100 0 0 chr1 6569706 6570015 -236094338 + AluSx SINE Alu 1 309 -3 194 244 0 0 chr1 6570021 6570066 -236094287 + L2 LINE L2 3216 3260 -12 206 283 0 0 chr1 6572476 6572522 -236091831 + (TAA)n Simple_repeat Simple_repeat 3 48 0 1220 218 26 95 chr1 6573172 6573562 -236090791 - MLT1A1 LTR MaLR -2 363 1 2652 49 3 0 chr1 6574100 6574405 -236089948 + AluY SINE Alu 1 306 -5 306 304 73 16 chr1 6575042 6575233 -236089120 + L1MD3 LINE L1 12 213 -6210 1955 245 195 37 chr1 6575274 6576771 -236087582 + L1MD3 LINE L1 994 2908 -4033 637 179 80 0 chr1 6576771 6576883 -236087470 + FLAM_A SINE Alu 1 121 -12 1955 245 195 37 chr1 6576883 6577310 -236087043 + L1MD3 LINE L1 2908 3266 -3675 1229 241 104 14 chr1 6577311 6577459 -236086894 + L1MD3 LINE L1 3578 3711 -3230 2307 86 3 25 chr1 6577459 6577773 -236086580 + AluY SINE Alu 1 307 -4 1229 241 104 14 chr1 6577773 6578064 -236086289 + L1MD3 LINE L1 3711 4057 -2884 279 222 56 0 chr1 6578052 6578124 -236086229 + L1MD3 LINE L1 5904 5979 -962 * 280 150 0 0 chr1 6578129 6578169 -236086184 + 5S rRNA rRNA 3 42 -79 2793 231 175 37 chr1 6578169 6579488 -236084865 + L1MD3 LINE L1 5972 6194 -747 1241 206 164 62 chr1 6579508 6580084 -236084269 + L1MC4a LINE L1 7159 7808 0 340 340 107 0 chr1 6580201 6580398 -236083955 + L2 LINE L2 1954 2171 -1143 712 239 49 22 chr1 6580410 6580594 -236083759 - MER3 DNA MER1_type -14 195 7 332 232 54 97 chr1 6580780 6580965 -236083388 - L1MC4a LINE L1 -1862 5946 5770 1704 113 4 9 chr1 6581435 6581666 -236082687 - MER30 DNA MER1_type 0 230 1 321 245 11 32 chr1 6582599 6582693 -236081660 + MIR SINE MIR 171 262 0 256 320 10 0 chr1 6583047 6583144 -236081209 - MIR SINE MIR -6 256 159 268 355 0 50 chr1 6583693 6583834 -236080519 - MIR SINE MIR -110 152 19 835 176 15 0 chr1 6583879 6584010 -236080343 + FLAM_C SINE Alu 1 133 -10 2304 85 10 0 chr1 6584014 6584308 -236080045 - AluSx SINE Alu -15 297 1 2630 242 107 30 chr1 6584337 6584532 -236079821 + L1MEc LINE L1 2089 2268 -3947 1515 193 3 47 chr1 6584532 6584833 -236079520 + AluJo SINE Alu 1 288 -24 2630 242 107 30 chr1 6584833 6585116 -236079237 + L1MEc LINE L1 2268 2528 -3687 2386 73 3 23 chr1 6585116 6585417 -236078936 + AluSp SINE Alu 1 295 -18 2630 242 107 30 chr1 6585417 6586120 -236078233 + L1MEc LINE L1 2528 3308 -2907 611 201 67 7 chr1 6586116 6586265 -236078088 - L1M4 LINE L1 -1359 4787 4630 * 1672 222 36 13 chr1 6586271 6586658 -236077695 - L1MEc LINE L1 -5531 865 470 590 204 107 51 chr1 6586647 6586863 -236077490 - L1MEc LINE L1 -6129 267 40 * 235 100 0 0 chr1 6587038 6587078 -236077275 + L1MA4 LINE L1 6258 6297 -3 369 308 61 20 chr1 6587105 6587352 -236077001 + L1MC4a LINE L1 5715 5971 -1837 2240 129 3 0 chr1 6587365 6587676 -236076677 + AluSq SINE Alu 1 312 -1 807 107 25 16 chr1 6587677 6587798 -236076555 + AluSc SINE Alu 132 253 -56 532 286 67 0 chr1 6590380 6590558 -236073795 + MIR SINE MIR 2 191 -71 402 287 50 0 chr1 6590593 6590694 -236073659 + L2 LINE L2 3202 3307 -6 2770 193 120 18 chr1 6590872 6591537 -236072816 - MER44D DNA MER2_type 0 605 1 1318 222 33 3 chr1 6592057 6592359 -236071994 - L1ME1 LINE L1 -7 6228 5918 9201 211 93 22 chr1 6592366 6594122 -236070231 - L1ME1 LINE L1 -1123 5092 3462 2153 128 0 3 chr1 6594122 6594428 -236069925 - AluSg SINE Alu -5 305 1 9201 211 93 22 chr1 6594428 6594593 -236069760 - L1ME1 LINE L1 -2753 3462 3310 1038 189 6 0 chr1 6594593 6594757 -236069596 - FRAM SINE Alu -1 165 1 9201 211 93 22 chr1 6594757 6595669 -236068684 - L1ME1 LINE L1 -2905 3310 2043 2107 121 13 3 chr1 6595669 6595975 -236068378 - AluSx SINE Alu -3 309 1 9201 211 93 22 chr1 6595975 6596189 -236068164 - L1ME1 LINE L1 -4172 2043 1846 1759 171 7 14 chr1 6596207 6596513 -236067840 - AluJo SINE Alu 0 304 1 27 73 0 0 chr1 6596534 6596589 -236067764 + AT_rich Low_complexity Low_complexity 1 55 0 345 361 145 7 chr1 6596698 6597160 -236067193 - L2 LINE L2 -1763 1551 1026 193 262 85 43 chr1 6597226 6597367 -236066986 - L2 LINE L2 -2445 869 723 1538 109 0 0 chr1 6597744 6597946 -236066407 - AluSg/x SINE Alu -3 309 108 2100 115 7 3 chr1 6597946 6598234 -236066119 - AluSx SINE Alu -23 289 1 261 299 118 35 chr1 6599000 6599144 -236065209 - MIR SINE MIR -74 188 33 1506 150 45 8 chr1 6599547 6599794 -236064559 + AluJo SINE Alu 1 256 -56 1554 163 45 7 chr1 6599945 6600160 -236064193 - L1MB3 LINE L1 -3 6180 5950 2040 120 32 0 chr1 6600160 6600443 -236063910 - AluSx SINE Alu -8 304 13 1554 163 45 7 chr1 6600443 6600515 -236063838 - L1MB3 LINE L1 -233 5950 5882 8762 152 51 29 chr1 6600528 6602076 -236062277 - L1M4 LINE L1 -3826 2556 1044 1893 155 34 0 chr1 6602076 6602373 -236061980 - AluJo SINE Alu -5 307 1 1710 157 52 0 chr1 6602373 6602659 -236061694 - AluJo SINE Alu -6 306 5 8762 152 51 29 chr1 6602659 6602776 -236061577 - L1M4 LINE L1 -5338 1044 931 1661 96 13 22 chr1 6602776 6603006 -236061347 + MER30 DNA MER1_type 1 228 -2 8762 152 51 29 chr1 6603006 6603144 -236061209 - L1M4 LINE L1 -5451 931 711 1662 160 65 7 chr1 6603147 6603454 -236060899 - L1M4 LINE L1 -6047 337 13 1467 156 67 15 chr1 6603663 6603933 -236060420 - MER7A DNA MER2_type -64 282 1 2160 118 3 0 chr1 6603976 6604272 -236060081 + AluSg SINE Alu 1 297 -13 207 196 0 0 chr1 6605785 6605831 -236058522 + T-rich Low_complexity Low_complexity 1 46 0 365 100 0 0 chr1 6607141 6607191 -236057162 - MER85 DNA T2_type 0 139 90 641 284 48 22 chr1 6607355 6607584 -236056769 - MIR SINE MIR 0 262 28 2416 63 10 3 chr1 6607843 6608145 -236056208 - AluY SINE Alu -7 304 1 1724 188 10 0 chr1 6608779 6609111 -236055242 - AluSx SINE Alu 0 335 1 1892 129 37 0 chr1 6609922 6610214 -236054139 + AluJb SINE Alu 1 302 0 253 68 45 0 chr1 6610245 6610289 -236054064 + (TATTG)n Simple_repeat Simple_repeat 2 47 0 1852 138 14 0 chr1 6610290 6610572 -236053781 - AluSx SINE Alu -26 286 1 349 281 170 7 chr1 6610633 6610786 -236053567 - MER5A DNA MER1_type 0 189 12 2325 71 14 0 chr1 6610983 6611266 -236053087 - AluSq SINE Alu -26 287 1 2320 101 0 0 chr1 6611726 6612024 -236052329 - AluSx SINE Alu -13 299 2 386 267 82 20 chr1 6612096 6612242 -236052111 - MIR SINE MIR -3 259 105 290 284 157 41 chr1 6615480 6615677 -236048676 + L2 LINE L2 2531 2750 -564 1709 128 115 35 chr1 6615703 6615819 -236048534 + AluJb SINE Alu 1 106 -206 2415 92 0 0 chr1 6615819 6616125 -236048228 + AluSg SINE Alu 1 306 -4 1709 128 115 35 chr1 6616125 6616296 -236048057 + AluJb SINE Alu 106 311 -1 266 247 43 21 chr1 6616313 6616406 -236047947 + L1M4 LINE L1 5029 5123 -1023 1110 126 57 77 chr1 6616409 6616603 -236047750 + L1MA8 LINE L1 6040 6236 -55 231 36 0 0 chr1 6616603 6616631 -236047722 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2292 105 0 0 chr1 6616634 6616929 -236047424 + AluSq SINE Alu 1 295 -18 1110 126 57 77 chr1 6616929 6616976 -236047377 + L1MA8 LINE L1 6238 6280 -11 349 169 60 12 chr1 6616969 6617052 -236047301 + L1M4 LINE L1 5114 5200 -946 * 1880 119 0 0 chr1 6617062 6617322 -236047031 + AluSq SINE Alu 6 265 -48 1204 179 9 0 chr1 6617353 6617438 -236046915 - AluJo SINE Alu -92 220 137 1470 191 28 21 chr1 6617438 6617755 -236046598 - AluJb SINE Alu 0 319 1 1204 179 9 0 chr1 6617755 6617886 -236046467 - AluJo SINE Alu -175 137 1 213 122 0 49 chr1 6617914 6617955 -236046398 + L2 LINE L2 3275 3313 0 267 289 125 39 chr1 6617985 6618290 -236046063 - L2 LINE L2 -63 3250 2920 2040 118 0 0 chr1 6618534 6618813 -236045540 + AluSx SINE Alu 1 279 -33 470 45 0 15 chr1 6618834 6618900 -236045453 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1866 163 10 0 chr1 6619332 6619626 -236044727 + AluJb SINE Alu 7 303 -9 1973 134 3 24 chr1 6620340 6620638 -236043715 - AluSx SINE Alu -20 292 1 239 137 0 39 chr1 6620991 6621042 -236043311 + (TTTAA)n Simple_repeat Simple_repeat 2 50 0 336 219 62 39 chr1 6621207 6621335 -236043018 - L2 LINE L2 -260 3053 2923 1846 151 0 4 chr1 6621483 6621762 -236042591 + AluJb SINE Alu 13 290 -22 826 266 242 3 chr1 6621832 6622317 -236042036 - L2 LINE L2 -2 3311 2706 911 192 6 6 chr1 6622317 6622499 -236041854 - AluJo SINE Alu -4 308 127 2116 136 3 0 chr1 6622516 6622817 -236041536 + AluSx SINE Alu 1 302 -10 630 295 74 8 chr1 6622833 6623091 -236041262 - L2 LINE L2 -755 2559 2285 601 273 33 0 chr1 6623093 6623276 -236041077 - L2 LINE L2 -1415 1899 1711 206 175 53 0 chr1 6623377 6623434 -236040919 - MIR SINE MIR -166 96 37 2145 74 7 42 chr1 6623671 6623980 -236040373 - AluSx SINE Alu -14 298 1 2053 119 50 74 chr1 6624094 6624168 -236040185 - MSTB1 LTR MaLR 0 432 358 631 77 0 0 chr1 6624168 6624246 -236040107 + MADE1 DNA Mariner 1 78 -2 2053 119 50 74 chr1 6624246 6624574 -236039779 - MSTB1 LTR MaLR -74 358 40 923 222 108 90 chr1 6624589 6624734 -236039619 + L2 LINE L2 2929 3070 -243 1299 13 0 0 chr1 6624734 6624883 -236039470 + (TATTG)n Simple_repeat Simple_repeat 2 150 0 2297 64 3 0 chr1 6624883 6625166 -236039187 - AluSp SINE Alu -29 284 1 923 222 108 90 chr1 6625166 6625397 -236038956 + L2 LINE L2 3069 3313 0 407 203 134 80 chr1 6625492 6625679 -236038674 - MLT1F1 LTR MaLR -5 562 366 833 141 36 123 chr1 6625869 6626037 -236038316 - MLT1B LTR MaLR -7 383 237 1851 239 80 15 chr1 6626037 6626634 -236037719 + LTR48B LTR ERV1 5 640 -4 833 141 36 123 chr1 6626634 6626685 -236037668 - MLT1B LTR MaLR -153 237 183 1137 136 61 48 chr1 6627255 6627411 -236036942 - MLT1B LTR MaLR -159 231 70 1644 164 20 10 chr1 6627411 6627709 -236036644 + AluJo SINE Alu 1 301 -11 1137 136 61 48 chr1 6627709 6627780 -236036573 - MLT1B LTR MaLR -320 70 1 2124 120 0 0 chr1 6628616 6628925 -236035428 - AluSq SINE Alu -4 309 1 1617 191 15 61 chr1 6629022 6629350 -236035003 + MLT1B LTR MaLR 1 309 -81 1999 109 3 0 chr1 6629350 6629656 -236034697 + AluSx SINE Alu 1 307 0 1617 191 15 61 chr1 6629656 6629735 -236034618 + MLT1B LTR MaLR 309 390 0 1603 155 129 35 chr1 6630493 6630835 -236033518 + MLT1A2 LTR MaLR 1 374 0 191 263 121 30 chr1 6630881 6630980 -236033373 - MIR SINE MIR -56 152 45 1843 172 50 34 chr1 6631857 6632241 -236032112 + MLT1B LTR MaLR 1 390 0 1621 219 119 30 chr1 6632554 6633051 -236031302 - MER90 LTR ERV1 0 614 74 13088 124 18 25 chr1 6633282 6633775 -236030578 + Tigger1 DNA MER2_type 4 499 -1919 2449 55 3 7 chr1 6633775 6634085 -236030268 + AluSc SINE Alu 1 309 0 13088 124 18 25 chr1 6634085 6635680 -236028673 + Tigger1 DNA MER2_type 499 2077 -341 3600 185 100 3 chr1 6635730 6636450 -236027903 + L1M2b LINE L1 2 791 -6418 2051 133 39 47 chr1 6636450 6636818 -236027535 + THE1C LTR MaLR 1 384 -44 2460 64 0 0 chr1 6636818 6637129 -236027224 - AluY SINE Alu 0 311 1 2051 133 39 47 chr1 6637129 6637174 -236027179 + THE1C LTR MaLR 384 428 0 873 285 169 24 chr1 6637178 6637683 -236026670 + L1M2b LINE L1 1111 1608 -5601 6652 186 198 46 chr1 6637687 6638605 -236025748 + L1M2b LINE L1 947 1725 -5484 2152 108 10 3 chr1 6638605 6638912 -236025441 + AluSc SINE Alu 1 309 0 6652 186 198 46 chr1 6638912 6639348 -236025005 + L1M2b LINE L1 1725 2094 -5115 2305 88 0 0 chr1 6639348 6639642 -236024711 + AluSg SINE Alu 1 294 -16 6652 186 198 46 chr1 6639642 6640350 -236024003 + L1M2b LINE L1 2094 3249 -3960 642 193 0 0 chr1 6640355 6640464 -236023889 + FLAM_A SINE Alu 18 126 -16 15623 157 33 26 chr1 6640468 6641214 -236023139 + L1MDa LINE L1 2571 3310 -3387 1758 174 0 0 chr1 6641214 6641515 -236022838 + AluSx SINE Alu 1 301 0 15623 157 33 26 chr1 6641515 6641742 -236022611 + L1MDa LINE L1 3310 3534 -3163 1685 157 0 20 chr1 6641742 6642036 -236022317 + AluJo SINE Alu 13 300 -12 15623 157 33 26 chr1 6642036 6643810 -236020543 + L1MDa LINE L1 3534 5368 -1329 1573 189 0 0 chr1 6643810 6644106 -236020247 + AluJo SINE Alu 3 298 -14 15623 157 33 26 chr1 6644106 6645435 -236018918 + L1MDa LINE L1 5368 6686 -11 1145 139 414 0 chr1 6645446 6645598 -236018755 + Tigger1 DNA MER2_type 2074 2162 -256 1584 94 115 0 chr1 6645598 6645833 -236018520 - AluSp SINE Alu -15 298 37 1145 139 414 0 chr1 6645833 6645924 -236018429 + Tigger1 DNA MER2_type 2162 2418 0 203 217 188 29 chr1 6645924 6645993 -236018360 + L2 LINE L2 3227 3306 -7 2014 137 0 23 chr1 6646058 6646364 -236017989 - AluJb SINE Alu -13 299 1 191 179 24 36 chr1 6646445 6646529 -236017824 + (TCCA)n Simple_repeat Simple_repeat 4 86 0 775 150 29 0 chr1 6646542 6646715 -236017638 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 991 129 11 0 chr1 6646742 6646920 -236017433 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 229 309 32 16 chr1 6647335 6647458 -236016895 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 216 312 13 52 chr1 6647534 6647688 -236016665 + (CGGGG)n Simple_repeat Simple_repeat 1 148 0 * 224 118 0 59 chr1 6647642 6647693 -236016660 + (TGGGGG)n Simple_repeat Simple_repeat 5 52 0 2146 90 33 0 chr1 6648526 6648826 -236015527 + AluSg SINE Alu 1 310 0 1424 138 59 45 chr1 6649244 6649534 -236014819 + AluJb SINE Alu 12 305 -7 256 311 261 23 chr1 6650323 6650629 -236013724 + L3 LINE CR1 941 1319 -258 * 477 277 48 32 chr1 6650615 6650803 -236013550 + MIR SINE MIR 28 218 -44 1697 166 0 57 chr1 6650897 6651228 -236013125 + AluJb SINE Alu 1 312 0 1573 111 11 73 chr1 6651278 6651539 -236012814 + AluSx SINE Alu 1 245 -67 2159 82 0 3 chr1 6651540 6651832 -236012521 + AluY SINE Alu 1 291 -20 459 108 0 0 chr1 6651832 6651897 -236012456 + AluSx SINE Alu 232 296 -14 413 210 59 25 chr1 6652219 6652338 -236012015 + L1ME2 LINE L1 5590 5712 -409 853 182 0 24 chr1 6652403 6652568 -236011785 + AluJo SINE Alu 39 199 -113 1629 206 157 40 chr1 6652597 6653052 -236011301 + L1MA8 LINE L1 5590 6146 -145 1590 110 0 0 chr1 6653052 6653355 -236010998 + AluSx SINE Alu 54 356 0 1629 206 157 40 chr1 6653355 6653519 -236010834 + L1MA8 LINE L1 6146 6289 -2 556 229 54 34 chr1 6653538 6653743 -236010610 + L1ME2 LINE L1 5878 6086 -78 2214 192 24 34 chr1 6653912 6654225 -236010128 - MLT1D LTR MaLR 0 505 197 1927 120 0 35 chr1 6654225 6654542 -236009811 - AluSx SINE Alu -6 306 1 2214 192 24 34 chr1 6654542 6654734 -236009619 - MLT1D LTR MaLR -308 197 5 193 234 141 16 chr1 6654788 6654852 -236009501 + L2 LINE L2 3200 3271 -1 1429 153 81 0 chr1 6654986 6655275 -236009078 + AluJb SINE Alu 1 310 0 229 341 35 12 chr1 6655678 6655763 -236008590 - MIR3 SINE MIR -109 99 13 198 167 0 0 chr1 6655884 6655920 -236008433 + T-rich Low_complexity Low_complexity 1 36 0 1829 147 30 0 chr1 6655929 6656229 -236008124 - AluJb SINE Alu -3 309 1 183 357 0 0 chr1 6656351 6656421 -236007932 - MER5A DNA MER1_type -110 79 10 1062 93 7 0 chr1 6656455 6656605 -236007748 + AluSg SINE Alu 1 151 -159 613 125 0 0 chr1 6656606 6656694 -236007659 + AluJo/FRAM SINE Alu 203 290 -22 2126 127 0 0 chr1 6656842 6657150 -236007203 + AluSq SINE Alu 1 308 -5 289 214 48 24 chr1 6657992 6658076 -236006277 + L1 LINE L1 4918 5003 -1143 231 211 18 0 chr1 6658096 6658153 -236006200 + L1 LINE L1 3505 3562 -2584 34 24 0 0 chr1 6658314 6658355 -236005998 + AT_rich Low_complexity Low_complexity 1 41 0 2106 105 0 7 chr1 6658458 6658753 -236005600 - AluSx SINE Alu -19 293 1 21 36 0 0 chr1 6658766 6658794 -236005559 + AT_rich Low_complexity Low_complexity 1 28 0 1386 264 82 40 chr1 6658956 6659347 -236005006 - L1M4 LINE L1 -1298 4848 4475 2187 92 0 10 chr1 6659347 6659642 -236004711 - AluSq SINE Alu -21 292 1 1386 264 82 40 chr1 6659642 6659970 -236004383 - L1M4 LINE L1 -1671 4475 4099 2193 180 78 32 chr1 6659971 6660227 -236004126 - LTR42 LTR ERVL 0 495 252 2113 59 0 7 chr1 6660227 6660497 -236003856 - AluY SINE Alu -8 303 36 2193 180 78 32 chr1 6660497 6660642 -236003711 - LTR42 LTR ERVL -243 252 66 2210 123 153 5 chr1 6660642 6661015 -236003338 - MSTA LTR MaLR 0 428 1 2193 180 78 32 chr1 6661015 6661085 -236003268 - LTR42 LTR ERVL -429 66 1 25 51 0 0 chr1 6661186 6661225 -236003128 + AT_rich Low_complexity Low_complexity 1 39 0 999 150 0 6 chr1 6661268 6661428 -236002925 - AluJ SINE Alu -18 294 136 925 226 157 32 chr1 6661477 6661870 -236002483 - MLT1F1 LTR MaLR -21 546 28 1714 174 7 7 chr1 6661870 6662175 -236002178 + AluJb SINE Alu 1 305 -7 2006 124 0 13 chr1 6662250 6662549 -236001804 + AluSx SINE Alu 1 295 -17 811 302 14 14 chr1 6662570 6662921 -236001432 - L1M4 LINE L1 -2456 3690 3340 453 285 94 43 chr1 6662944 6663179 -236001174 - L2 LINE L2 -643 2671 2425 239 222 19 0 chr1 6663223 6663277 -236001076 - MIR SINE MIR -12 250 196 265 244 0 26 chr1 6663277 6663355 -236000998 + (TA)n Simple_repeat Simple_repeat 2 77 0 225 0 0 0 chr1 6663362 6663387 -236000966 + (TG)n Simple_repeat Simple_repeat 2 26 0 431 151 35 47 chr1 6663388 6663474 -236000879 - MIR SINE MIR -58 204 120 193 214 24 0 chr1 6663545 6663587 -236000766 - L2 LINE L2 -959 2355 2313 376 320 12 17 chr1 6663613 6663785 -236000568 - L2 LINE L2 -325 2988 2818 697 142 50 8 chr1 6664355 6664475 -235999878 - AluJ SINE Alu -186 126 2 215 361 37 9 chr1 6664537 6664645 -235999708 + MIR3 SINE MIR 77 187 -21 186 43 0 0 chr1 6664744 6664767 -235999586 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 722 219 3 0 chr1 6664773 6665097 -235999256 + CT-rich Low_complexity Low_complexity 1 324 0 191 61 30 0 chr1 6665126 6665159 -235999194 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1766 134 10 10 chr1 6665159 6665444 -235998909 - AluSx SINE Alu -27 285 1 29 70 0 0 chr1 6665817 6665874 -235998479 + AT_rich Low_complexity Low_complexity 1 57 0 1555 154 0 42 chr1 6665971 6666256 -235998097 + AluJo SINE Alu 34 306 -6 2225 96 3 0 chr1 6666378 6666681 -235997672 + AluSx SINE Alu 1 304 -8 1528 158 3 67 chr1 6666780 6666892 -235997461 + MLT2D LTR ERVL 1 119 -295 2160 85 13 7 chr1 6666892 6667198 -235997155 - AluSp SINE Alu -5 308 1 1528 158 3 67 chr1 6667198 6667212 -235997141 + MLT2D LTR ERVL 119 132 -282 606 63 13 0 chr1 6667212 6667291 -235997062 - MADE1 DNA Mariner 0 80 1 1528 158 3 67 chr1 6667291 6667461 -235996892 + MLT2D LTR ERVL 132 279 -135 887 27 0 9 chr1 6668155 6668266 -235996087 + (GAAA)n Simple_repeat Simple_repeat 3 112 0 1762 144 17 17 chr1 6668724 6669023 -235995330 + AluSx SINE Alu 1 299 -13 1235 185 65 45 chr1 6669121 6669413 -235994940 + AluJo SINE Alu 2 299 -3 2003 111 16 29 chr1 6669635 6669775 -235994578 + AluSx SINE Alu 1 141 -171 1872 128 17 0 chr1 6669775 6670071 -235994282 + AluSx SINE Alu 1 301 -11 2003 111 16 29 chr1 6670071 6670236 -235994117 + AluSx SINE Alu 141 302 -10 1032 97 14 7 chr1 6670418 6670562 -235993791 - THE1B LTR MaLR 0 364 220 2012 103 50 0 chr1 6670564 6670846 -235993507 - AluSg SINE Alu -14 296 1 928 92 0 0 chr1 6670868 6670987 -235993366 - THE1B LTR MaLR -245 119 1 21 0 0 0 chr1 6671004 6671025 -235993328 + AT_rich Low_complexity Low_complexity 1 21 0 2089 104 3 10 chr1 6671031 6671328 -235993025 + AluSx SINE Alu 14 308 -4 2131 89 28 3 chr1 6671378 6671669 -235992684 - AluSx SINE Alu -14 298 1 3534 120 47 34 chr1 6671843 6672461 -235991892 + MER39B LTR ERV1 26 651 -2 1324 126 0 102 chr1 6672469 6672762 -235991591 - AluJo SINE Alu -3 309 47 476 312 158 14 chr1 6673128 6673343 -235991010 - MIR SINE MIR -10 252 7 2330 61 7 0 chr1 6673376 6673673 -235990680 + AluSx SINE Alu 1 299 -13 1936 129 88 38 chr1 6673872 6674214 -235990139 + MER101 LTR ERV1 1 359 -115 1598 153 0 8 chr1 6674207 6674468 -235989885 - AluSx SINE Alu -10 302 44 1972 171 97 95 chr1 6674621 6675231 -235989122 + LTR36 LTR ERV1 1 611 0 783 172 8 0 chr1 6675330 6675464 -235988889 - FLAM_C SINE Alu 0 143 9 192 97 0 0 chr1 6675484 6675515 -235988838 + (T)n Simple_repeat Simple_repeat 1 31 0 1899 67 0 4 chr1 6675515 6675769 -235988584 - AluY SINE Alu -58 253 1 356 181 12 0 chr1 6675939 6676022 -235988331 + C-rich Low_complexity Low_complexity 2 85 0 1401 149 0 5 chr1 6676595 6676809 -235987544 - AluJb SINE Alu -15 297 85 2164 123 0 0 chr1 6676819 6677129 -235987224 - AluSx SINE Alu -2 310 1 2233 96 0 3 chr1 6677139 6677441 -235986912 - AluSx SINE Alu -8 304 4 1052 303 64 30 chr1 6678548 6678687 -235985666 + L1MC/D LINE L1 4532 4665 -1481 2182 94 3 7 chr1 6678687 6678986 -235985367 - AluSx SINE Alu -14 298 1 1052 303 64 30 chr1 6678986 6679516 -235984837 + L1MC/D LINE L1 4665 5224 -922 803 112 0 0 chr1 6679523 6679630 -235984723 + AluJb SINE Alu 5 111 -201 36 23 0 0 chr1 6679647 6679690 -235984663 + AT_rich Low_complexity Low_complexity 1 43 0 222 116 0 0 chr1 6679711 6679754 -235984599 + (TA)n Simple_repeat Simple_repeat 2 44 0 1832 148 0 7 chr1 6679757 6680041 -235984312 - AluSq SINE Alu -31 282 1 760 252 45 77 chr1 6680045 6680139 -235984214 + L1MC/D LINE L1 5219 5315 -1016 1697 145 46 3 chr1 6680139 6680422 -235983931 - AluJb SINE Alu -17 295 1 760 252 45 77 chr1 6680422 6680705 -235983648 + L1MC/D LINE L1 5315 5585 -746 369 313 23 31 chr1 6680853 6680981 -235983372 + MLT1I LTR MaLR 203 329 -80 1958 128 30 0 chr1 6680981 6681277 -235983076 + AluSx SINE Alu 1 305 -7 904 138 14 0 chr1 6681331 6681469 -235982884 + FAM SINE Alu 18 157 -28 1592 149 52 21 chr1 6682131 6682419 -235981934 + AluJb SINE Alu 1 297 -15 2052 116 0 0 chr1 6682809 6683138 -235981215 + AluSq SINE Alu 1 329 0 2220 70 0 11 chr1 6683141 6683455 -235980898 + AluSg1 SINE Alu 1 311 0 1633 250 63 39 chr1 6684118 6684285 -235980068 + L1MD2 LINE L1 122 284 -6256 2045 133 0 0 chr1 6684285 6684585 -235979768 + AluSx SINE Alu 1 300 -12 1633 250 63 39 chr1 6684585 6684650 -235979703 + L1MD2 LINE L1 284 346 -6194 2279 101 0 0 chr1 6684650 6684956 -235979397 - AluSg SINE Alu -4 306 1 1633 250 63 39 chr1 6684956 6685312 -235979041 + L1MD2 LINE L1 346 1025 -5515 1639 165 3 14 chr1 6685314 6685605 -235978748 + AluJo SINE Alu 3 290 -22 519 208 33 0 chr1 6685614 6685734 -235978619 + L1MD2 LINE L1 4805 4928 -1612 4739 129 38 32 chr1 6685736 6686050 -235978303 + Tigger3b DNA MER2_type 1 312 -2716 369 0 0 0 chr1 6686050 6686091 -235978262 + (TA)n Simple_repeat Simple_repeat 1 41 0 1888 116 4 4 chr1 6686100 6686377 -235977976 + AluSx SINE Alu 1 277 -35 275 0 29 0 chr1 6686380 6686415 -235977938 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 4739 129 38 32 chr1 6686415 6686787 -235977566 + Tigger3b DNA MER2_type 320 709 -2319 1977 102 42 0 chr1 6686787 6687071 -235977282 + AluSq SINE Alu 1 296 -17 4739 129 38 32 chr1 6687071 6687197 -235977156 + Tigger3b DNA MER2_type 709 833 -398 3599 104 2 4 chr1 6687197 6687677 -235976676 - MER1A DNA MER1_type 0 529 51 2007 119 0 0 chr1 6687677 6687955 -235976398 - AluSx SINE Alu -33 279 2 1721 148 19 0 chr1 6687966 6688230 -235976123 + Tigger3b DNA MER2_type 973 1241 0 1358 228 54 50 chr1 6688231 6688696 -235975657 + L1MD2 LINE L1 4930 5396 -1144 873 133 0 0 chr1 6688701 6688829 -235975524 + FLAM_C SINE Alu 5 132 -11 2285 152 28 54 chr1 6688844 6689273 -235975080 + LTR3 LTR ERVK 5 422 -10 999 125 0 7 chr1 6689283 6689435 -235974918 + AluJb SINE Alu 144 294 -18 3682 221 70 14 chr1 6689438 6690310 -235974043 + L1MD2 LINE L1 5398 6220 -533 1320 147 184 109 chr1 6690310 6690365 -235973988 + MER65A LTR ERV1 1 50 -395 1772 136 45 0 chr1 6690365 6690652 -235973701 + AluSx SINE Alu 1 300 -12 191 61 30 0 chr1 6690656 6690689 -235973664 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 1320 147 184 109 chr1 6690689 6690907 -235973446 + MER65A LTR ERV1 52 322 -123 2214 98 0 16 chr1 6690907 6691222 -235973131 - AluSx SINE Alu -2 310 1 1320 147 184 109 chr1 6691222 6691356 -235972997 + MER65A LTR ERV1 322 445 0 3682 221 70 14 chr1 6691356 6691703 -235972650 + L1MD2 LINE L1 6220 6740 -13 2284 80 10 3 chr1 6691723 6692023 -235972330 - AluSq SINE Alu -11 302 1 482 114 29 0 chr1 6692034 6692104 -235972249 - tRNA-Glu-GAG tRNA tRNA -3 72 1 1590 160 3 42 chr1 6692256 6692543 -235971810 + AluJo SINE Alu 26 301 -11 1555 273 67 62 chr1 6692600 6693534 -235970819 + L1ME3A LINE L1 5188 6140 -30 2196 79 24 0 chr1 6693617 6693909 -235970444 + AluSp SINE Alu 1 299 -14 180 277 21 0 chr1 6694140 6694187 -235970166 - MIR SINE MIR -14 248 201 708 111 0 0 chr1 6694409 6694517 -235969836 + (CA)n Simple_repeat Simple_repeat 1 108 0 825 186 32 50 chr1 6694588 6694809 -235969544 - MER20 DNA MER1_type 0 219 3 1542 115 165 11 chr1 6695210 6695470 -235968883 + AluSg SINE Alu 1 300 0 2091 105 0 23 chr1 6695490 6695795 -235968558 + AluSx SINE Alu 1 298 -14 1563 154 16 38 chr1 6695849 6696168 -235968185 + AluJo SINE Alu 1 312 0 2171 110 7 0 chr1 6696184 6696492 -235967861 + AluSg SINE Alu 1 310 0 281 311 39 10 chr1 6697193 6697296 -235967057 + MIR SINE MIR 7 112 -150 1269 137 27 41 chr1 6697305 6697524 -235966829 + AluJo SINE Alu 7 222 -90 314 288 137 7 chr1 6697575 6697714 -235966639 + MIR SINE MIR 106 262 0 1973 105 3 7 chr1 6697889 6698215 -235966138 + AluSq SINE Alu 1 325 0 762 214 46 100 chr1 6698400 6698680 -235965673 - MER5C DNA MER1_type -52 272 8 1508 150 70 28 chr1 6698931 6699218 -235965135 - AluJb SINE Alu -13 299 1 33 25 0 0 chr1 6699779 6699819 -235964534 + AT_rich Low_complexity Low_complexity 1 40 0 2320 87 0 0 chr1 6700793 6701092 -235963261 + AluSx SINE Alu 1 299 -13 679 228 132 0 chr1 6701347 6701514 -235962839 - MIR SINE MIR -6 256 68 218 275 113 65 chr1 6702978 6703207 -235961146 - MIR SINE MIR -3 259 20 202 258 0 32 chr1 6703366 6703388 -235960965 + A-rich Low_complexity Low_complexity 32 53 -38 1648 123 82 10 chr1 6703388 6703680 -235960673 + AluSq SINE Alu 1 313 0 202 258 0 32 chr1 6703680 6703719 -235960634 + A-rich Low_complexity Low_complexity 53 91 0 431 213 11 33 chr1 6703732 6703915 -235960438 + GA-rich Low_complexity Low_complexity 2 180 0 315 0 0 0 chr1 6703962 6703997 -235960356 + (GGA)n Simple_repeat Simple_repeat 1 35 0 378 282 99 50 chr1 6704541 6704722 -235959631 + MIR SINE MIR 59 248 -14 1747 171 10 0 chr1 6705355 6705654 -235958699 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr1 6705926 6705947 -235958406 + AT_rich Low_complexity Low_complexity 1 21 0 2281 86 0 10 chr1 6706021 6706369 -235957984 + AluY SINE Alu 1 345 0 505 219 42 17 chr1 6706931 6707050 -235957303 - Zaphod DNA AcHobo -5 4026 3905 667 248 159 37 chr1 6707060 6707387 -235956966 + Zaphod DNA AcHobo 72 438 -3593 1393 125 5 5 chr1 6707445 6707661 -235956692 - AluJb SINE Alu -13 299 84 990 224 98 35 chr1 6707663 6708154 -235956199 + Zaphod DNA AcHobo 469 990 -3041 907 199 199 30 chr1 6708152 6708264 -235956089 + Zaphod DNA AcHobo 3595 3687 -344 * 2191 98 0 0 chr1 6708264 6708559 -235955794 - AluSx SINE Alu -17 295 1 907 199 199 30 chr1 6708559 6708812 -235955541 + Zaphod DNA AcHobo 3687 4022 -9 180 296 0 0 chr1 6708824 6708868 -235955485 + L2 LINE L2 3270 3313 0 751 286 91 0 chr1 6709034 6709254 -235955099 - MIR SINE MIR -8 254 15 1174 225 126 37 chr1 6709257 6709693 -235954660 - Charlie4a DNA MER1_type -7 501 27 189 354 73 0 chr1 6710006 6710088 -235954265 - MIR SINE MIR 0 262 175 2053 117 0 0 chr1 6710144 6710427 -235953926 + AluSx SINE Alu 1 283 -29 215 273 61 0 chr1 6710473 6710539 -235953814 - MIR SINE MIR -89 173 104 824 225 78 45 chr1 6710561 6710805 -235953548 - MIR SINE MIR -9 253 2 2260 84 0 0 chr1 6711969 6712266 -235952087 - AluSx SINE Alu -15 297 1 855 232 116 41 chr1 6712267 6712560 -235951793 + L2 LINE L2 2995 3309 -4 181 298 47 82 chr1 6712679 6712778 -235951575 - L2 LINE L2 -191 3081 2989 2304 91 3 0 chr1 6712778 6713087 -235951266 + AluSg SINE Alu 1 310 0 181 298 47 82 chr1 6713087 6713158 -235951195 - L2 LINE L2 -283 2989 2917 339 25 0 0 chr1 6713807 6713847 -235950506 + (TCTCCC)n Simple_repeat Simple_repeat 5 44 0 5187 73 34 55 chr1 6713853 6714688 -235949665 + SVA Other Other 50 866 -520 2684 103 25 76 chr1 6714711 6715314 -235949039 + SVA Other Other 476 1047 -339 802 137 0 43 chr1 6715342 6715481 -235948872 + FLAM_C SINE Alu 1 133 0 359 282 53 23 chr1 6716592 6716723 -235947630 - L2 LINE L2 -16 3297 3163 2315 73 0 13 chr1 6716773 6717087 -235947266 - AluSq SINE Alu -3 310 1 742 191 0 0 chr1 6717373 6717504 -235946849 + FLAM_A SINE Alu 1 131 -2 237 329 197 7 chr1 6717755 6717892 -235946461 + MIR SINE MIR 1 163 -99 505 190 42 21 chr1 6717892 6718034 -235946319 + HAL1 LINE L1 2270 2414 -93 288 206 48 48 chr1 6718145 6718208 -235946145 - MLT1I LTR MaLR -107 302 240 252 241 108 0 chr1 6718308 6718391 -235945962 - MLT1I LTR MaLR -272 137 46 1912 109 28 7 chr1 6718669 6718952 -235945401 + AluSx SINE Alu 3 291 -21 1555 133 88 35 chr1 6719226 6719511 -235944842 - AluJo SINE Alu -1 301 2 24 0 0 0 chr1 6719514 6719538 -235944815 + AT_rich Low_complexity Low_complexity 1 24 0 2172 125 0 0 chr1 6719624 6719936 -235944417 + AluSx SINE Alu 1 312 0 2186 91 0 7 chr1 6719945 6720242 -235944111 - AluSc SINE Alu -14 295 1 2248 115 0 0 chr1 6720295 6720607 -235943746 + AluSx SINE Alu 1 312 0 2071 116 7 0 chr1 6720636 6720946 -235943407 + AluSx SINE Alu 1 312 0 3796 137 83 27 chr1 6720946 6721533 -235942820 + L1MA4 LINE L1 5044 5702 -598 2000 138 3 0 chr1 6721533 6721838 -235942515 + AluSx SINE Alu 1 306 -6 3796 137 83 27 chr1 6721838 6722201 -235942152 + L1MA4 LINE L1 5702 6043 -257 1248 71 88 6 chr1 6722210 6722380 -235941973 - MER84 LTR ERVI 0 507 324 863 70 0 0 chr1 6722380 6722495 -235941858 + MER84-int LTR ERV1 1242 1356 -3598 754 83 148 0 chr1 6722495 6722603 -235941750 - MER84 LTR ERVI -383 124 1 1123 171 25 25 chr1 6722603 6722842 -235941511 + L1MA4 LINE L1 6054 6292 -8 181 213 75 150 chr1 6722884 6722964 -235941389 - L2 LINE L2 -18 3295 3222 21 0 0 0 chr1 6724496 6724517 -235939836 + AT_rich Low_complexity Low_complexity 1 21 0 1576 164 39 4 chr1 6724833 6725114 -235939239 - AluJb SINE Alu -15 297 7 1902 126 30 0 chr1 6725128 6725430 -235938923 - AluSx SINE Alu -1 311 1 2101 106 7 3 chr1 6725575 6725868 -235938485 - AluSg1 SINE Alu -15 294 1 733 233 158 0 chr1 6725967 6726169 -235938184 - MIR SINE MIR -21 241 8 483 285 130 36 chr1 6726280 6726557 -235937796 - L1MC/D LINE L1 -2097 5711 5409 349 267 43 26 chr1 6726615 6726731 -235937622 + MER94 DNA DNA 1 118 -16 913 176 0 0 chr1 6726849 6726997 -235937356 + FRAM SINE Alu 1 146 -30 187 312 117 0 chr1 6727311 6727388 -235936965 + L2 LINE L2 3209 3294 -19 288 260 0 0 chr1 6727388 6727461 -235936892 + (TGGG)n Simple_repeat Simple_repeat 3 75 0 820 203 48 0 chr1 6727557 6727744 -235936609 - AluJb SINE Alu -4 308 113 1578 138 20 79 chr1 6728171 6728476 -235935877 + AluJo SINE Alu 1 287 -25 4393 111 33 6 chr1 6728552 6729243 -235935110 - L1MA5A LINE L1 -1 6296 5587 1558 192 0 7 chr1 6729392 6729684 -235934669 + AluJo SINE Alu 1 290 -22 2074 123 17 0 chr1 6729783 6730085 -235934268 + AluSg SINE Alu 1 307 -3 1895 154 0 3 chr1 6730274 6730572 -235933781 - AluSx SINE Alu -15 297 1 268 312 72 8 chr1 6730875 6731000 -235933353 - L1MC/D LINE L1 -1949 5859 5727 2181 92 3 0 chr1 6731340 6731633 -235932720 - AluSg SINE Alu -16 294 1 1568 193 0 13 chr1 6731664 6731965 -235932388 + AluJo SINE Alu 1 297 -15 2289 60 0 0 chr1 6733406 6733718 -235930635 + AluSq SINE Alu 1 312 0 192 152 0 0 chr1 6733730 6733763 -235930590 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1454 159 31 31 chr1 6733935 6734225 -235930128 + AluJo SINE Alu 1 290 -22 338 60 0 20 chr1 6734330 6734380 -235929973 - MADE1 DNA Mariner 0 80 32 885 146 0 0 chr1 6734382 6734512 -235929841 + AluSx SINE Alu 6 135 -178 1849 110 10 40 chr1 6734512 6734811 -235929542 + AluSx SINE Alu 1 290 -22 301 146 427 0 chr1 6734815 6734897 -235929456 + Charlie1 DNA MER1_type 2642 2758 -3 1896 91 0 0 chr1 6735246 6735499 -235928854 + AluSq SINE Alu 60 312 -1 1387 77 0 6 chr1 6735499 6735681 -235928672 + AluSx SINE Alu 120 300 -12 1608 164 0 50 chr1 6735783 6736101 -235928252 + AluJo SINE Alu 1 302 -10 2384 61 0 0 chr1 6736103 6736397 -235927956 + AluY SINE Alu 1 294 -17 2299 88 7 3 chr1 6736603 6736909 -235927444 - AluSq SINE Alu -6 307 1 21 36 0 0 chr1 6737587 6737615 -235926738 + AT_rich Low_complexity Low_complexity 1 28 0 2234 67 0 0 chr1 6738467 6738775 -235925578 - AluY SINE Alu 0 308 1 714 175 32 0 chr1 6739213 6739339 -235925014 - FLAM_C SINE Alu -2 131 2 1657 118 0 0 chr1 6739506 6739743 -235924610 - AluSg SINE Alu -3 307 71 2222 97 0 3 chr1 6739743 6740051 -235924302 - AluSg SINE Alu -1 309 1 581 114 0 0 chr1 6740051 6740130 -235924223 - AluSg SINE Alu -230 80 2 1180 76 0 13 chr1 6740148 6740305 -235924048 - AluSg/x SINE Alu -14 296 142 1780 148 10 13 chr1 6740317 6740620 -235923733 + AluJb SINE Alu 1 302 -10 465 292 31 42 chr1 6740657 6740917 -235923436 - L1MC4a LINE L1 -1864 5944 5688 808 154 114 50 chr1 6740982 6741202 -235923151 - L1MC1 LINE L1 0 6333 6100 1608 189 0 3 chr1 6741271 6741557 -235922796 - AluJb SINE Alu -27 285 1 2214 83 0 17 chr1 6741631 6741933 -235922420 + AluY SINE Alu 2 298 -13 747 159 0 36 chr1 6742615 6742753 -235921600 - FLAM_C SINE Alu 0 143 11 328 262 170 7 chr1 6742886 6743027 -235921326 + MIR SINE MIR 20 183 -79 274 174 113 42 chr1 6743116 6743187 -235921166 - MIR SINE MIR -91 117 40 623 278 57 5 chr1 6743189 6743398 -235920955 - MER58A DNA MER1_type 0 224 5 2260 86 0 0 chr1 6743411 6743713 -235920640 - AluY SINE Alu -9 302 1 2110 100 3 37 chr1 6743721 6744042 -235920311 - AluSx SINE Alu -2 310 1 673 81 101 0 chr1 6744639 6744738 -235919615 - HY1 scRNA scRNA -2 110 2 211 213 0 0 chr1 6744897 6744944 -235919409 - L2 LINE L2 -5 3267 3221 207 255 85 66 chr1 6745085 6745191 -235919162 + L2 LINE L2 2366 2473 -841 1940 143 0 7 chr1 6747260 6747567 -235916786 + AluJo SINE Alu 1 305 -7 231 217 29 29 chr1 6747650 6747719 -235916634 + MLT1K LTR MaLR 25 93 -495 587 279 157 39 chr1 6748123 6748556 -235915797 - L2 LINE L2 -1 3312 2829 2243 91 3 10 chr1 6748725 6749033 -235915320 - AluSx SINE Alu -6 306 1 1787 144 17 7 chr1 6749164 6749463 -235914890 - AluSx SINE Alu -10 302 1 1785 142 24 0 chr1 6749463 6749751 -235914602 - AluJb SINE Alu -17 295 1 1801 138 17 14 chr1 6749809 6750105 -235914248 - AluSx SINE Alu -14 298 2 2110 114 0 3 chr1 6750130 6750429 -235913924 + AluSg SINE Alu 1 298 -12 1100 113 12 27 chr1 6751840 6752442 -235911911 + (CACCAT)n Simple_repeat Simple_repeat 1 593 0 2213 104 0 3 chr1 6752628 6752936 -235911417 - AluSg SINE Alu -2 308 2 2222 100 0 0 chr1 6753294 6753593 -235910760 - AluSq SINE Alu -14 299 1 2174 94 0 25 chr1 6754408 6754726 -235909627 + AluSq SINE Alu 1 310 -3 1208 133 0 122 chr1 6754875 6755138 -235909215 - AluJb SINE Alu -13 299 69 3070 146 25 13 chr1 6755169 6755519 -235908834 - L1MB3 LINE L1 -1 6182 5838 1957 130 3 0 chr1 6755519 6755819 -235908534 - AluSx SINE Alu -11 301 1 3070 146 25 13 chr1 6755819 6756155 -235908198 - L1MB3 LINE L1 -345 5838 5321 376 143 32 0 chr1 6756168 6756231 -235908122 - U6 snRNA snRNA -42 65 1 2051 120 0 7 chr1 6756276 6756568 -235907785 - AluSx SINE Alu -11 301 12 223 70 23 23 chr1 6756675 6756718 -235907635 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 752 211 3 6 chr1 6756740 6757019 -235907334 + CT-rich Low_complexity Low_complexity 1 278 0 351 197 0 0 chr1 6757094 6757160 -235907193 - AluJ/FRAM SINE Alu -4 298 233 * 599 178 24 21 chr1 6757159 6757300 -235907053 - MER34B LTR ERV1 -400 142 1 305 167 0 0 chr1 6757319 6757373 -235906980 + Alu SINE Alu 242 295 -5 306 0 0 0 chr1 6757376 6757410 -235906943 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 868 261 46 79 chr1 6757415 6757548 -235906805 - L1M4 LINE L1 -2166 3980 3844 2415 56 0 3 chr1 6757548 6757850 -235906503 - AluY SINE Alu -10 301 1 868 261 46 79 chr1 6757850 6758058 -235906295 - L1M4 LINE L1 -2302 3844 3631 2182 88 0 3 chr1 6758058 6758355 -235905998 - AluY SINE Alu -15 296 1 868 261 46 79 chr1 6758355 6758382 -235905971 - L1M4 LINE L1 -2515 3631 3605 2153 153 67 20 chr1 6758382 6758786 -235905567 - MSTB LTR MaLR -2 424 2 868 261 46 79 chr1 6758786 6758897 -235905456 - L1M4 LINE L1 -2541 3605 3515 * 987 231 37 26 chr1 6758895 6759163 -235905190 - L1MB5 LINE L1 0 6174 5904 711 173 43 7 chr1 6759174 6759313 -235905040 - L1MB5 LINE L1 -379 5795 5652 2344 103 0 0 chr1 6759321 6759633 -235904720 - AluSx SINE Alu 0 312 1 1641 98 43 35 chr1 6759634 6759890 -235904463 + MSTB1 LTR MaLR 175 432 0 306 248 4 111 chr1 6759890 6760005 -235904348 - L1MEd LINE L1 -5023 1096 1015 2015 146 0 3 chr1 6760005 6760314 -235904039 - AluSx SINE Alu -4 308 1 306 248 4 111 chr1 6760314 6760424 -235903929 - L1MEd LINE L1 -5104 1015 895 1589 174 62 62 chr1 6760426 6760623 -235903730 - MSTD LTR MaLR 0 396 196 2003 121 0 0 chr1 6760623 6760925 -235903428 + AluSx SINE Alu 1 302 0 1589 174 62 62 chr1 6760925 6761083 -235903270 - MSTD LTR MaLR -199 197 40 1636 171 36 13 chr1 6761084 6761389 -235902964 - AluJb SINE Alu 0 312 1 22 56 0 0 chr1 6761540 6761576 -235902777 + AT_rich Low_complexity Low_complexity 1 36 0 716 101 0 0 chr1 6761606 6761705 -235902648 + L1MA2 LINE L1 6206 6304 0 22 0 0 0 chr1 6761705 6761727 -235902626 + AT_rich Low_complexity Low_complexity 1 22 0 1914 129 0 10 chr1 6761788 6762083 -235902270 - AluSx SINE Alu -5 307 16 574 263 75 94 chr1 6762220 6762328 -235902025 - HAL1 LINE L1 -841 1666 1557 2116 114 0 13 chr1 6762328 6762645 -235901708 - AluSq SINE Alu 0 313 1 574 263 75 94 chr1 6762645 6762962 -235901391 - HAL1 LINE L1 -950 1557 1249 1763 79 64 19 chr1 6763038 6763339 -235901014 + AluSg SINE Alu 1 313 0 1957 106 3 20 chr1 6763343 6763635 -235900718 - AluSc SINE Alu -14 295 9 2030 121 14 0 chr1 6763646 6763943 -235900410 - AluSg SINE Alu -9 301 1 314 308 170 11 chr1 6763943 6764125 -235900228 - HAL1 LINE L1 -1477 1030 820 2164 103 7 0 chr1 6764520 6764822 -235899531 - AluSx SINE Alu -8 304 1 236 29 0 29 chr1 6767369 6767403 -235896950 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 1854 91 84 0 chr1 6767403 6767677 -235896676 - AluSg1 SINE Alu -12 297 1 2164 118 7 0 chr1 6767677 6767982 -235896371 - AluSx SINE Alu -5 307 1 2261 81 0 3 chr1 6768761 6769058 -235895295 - AluSg SINE Alu -14 296 1 360 0 0 0 chr1 6769198 6769238 -235895115 + (TC)n Simple_repeat Simple_repeat 2 41 0 2283 82 7 3 chr1 6769253 6769559 -235894794 - AluSp SINE Alu -6 307 1 424 204 204 0 chr1 6769696 6769833 -235894520 + L1MD2 LINE L1 6194 6358 -1 2089 106 0 3 chr1 6770090 6770383 -235893970 - AluSq SINE Alu -21 292 1 2078 101 14 0 chr1 6770566 6770863 -235893490 + AluSx SINE Alu 1 301 -11 196 255 0 21 chr1 6771003 6771050 -235893303 - MIR SINE MIR -62 146 101 1926 100 0 45 chr1 6771076 6771385 -235892968 + AluSp SINE Alu 1 295 -18 329 309 147 16 chr1 6772042 6772233 -235892120 + L2 LINE L2 2549 2764 -550 367 309 216 10 chr1 6772643 6772837 -235891516 - MIR SINE MIR -12 250 17 364 188 188 62 chr1 6778701 6778829 -235885524 + L2 LINE L2 3127 3270 -2 28 0 0 0 chr1 6780120 6780148 -235884205 + GC_rich Low_complexity Low_complexity 1 28 0 189 303 146 18 chr1 6780599 6780764 -235883589 + L2 LINE L2 2226 2411 -903 192 40 0 0 chr1 6782279 6782304 -235882049 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2211 103 31 0 chr1 6782308 6782600 -235881753 - AluSp SINE Alu -12 301 1 796 249 86 20 chr1 6783410 6783655 -235880698 - MIR SINE MIR 0 262 2 362 192 68 89 chr1 6784148 6784294 -235880059 - MIR SINE MIR -25 237 95 242 309 0 0 chr1 6784423 6784504 -235879849 - MIR SINE MIR -123 139 59 479 288 137 24 chr1 6784558 6784850 -235879503 - L2 LINE L2 0 3313 2989 1976 148 3 3 chr1 6785029 6785334 -235879019 - AluJb SINE Alu -7 305 1 189 238 181 29 chr1 6786215 6786320 -235878033 - L2 LINE L2 -3 3310 3190 24 0 0 0 chr1 6787831 6787855 -235876498 + GC_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr1 6788057 6788086 -235876267 + (CCG)n Simple_repeat Simple_repeat 2 30 0 291 386 0 0 chr1 6788581 6788841 -235875512 + (CGGTG)n Simple_repeat Simple_repeat 1 260 0 24 53 0 0 chr1 6791139 6791177 -235873176 + AT_rich Low_complexity Low_complexity 1 38 0 234 0 0 0 chr1 6791495 6791521 -235872832 + (CA)n Simple_repeat Simple_repeat 2 27 0 2472 58 0 0 chr1 6791548 6791841 -235872512 - AluSc SINE Alu -14 295 3 2153 129 7 0 chr1 6792001 6792341 -235872012 - AluSp SINE Alu 0 313 1 2362 98 0 3 chr1 6792675 6792981 -235871372 - AluSq SINE Alu -8 305 1 180 0 0 0 chr1 6793164 6793184 -235871169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 423 249 217 37 chr1 6793452 6793655 -235870698 + MIR SINE MIR 7 253 -9 2077 139 0 0 chr1 6793655 6793956 -235870397 - AluSx SINE Alu -11 301 1 423 249 217 37 chr1 6793956 6793969 -235870384 + MIR SINE MIR 253 262 0 2312 86 3 0 chr1 6794582 6794872 -235869481 + AluSq SINE Alu 1 291 -22 2015 156 0 3 chr1 6795529 6795830 -235868523 - AluSx SINE Alu -12 300 1 2046 151 0 0 chr1 6796144 6796448 -235867905 + AluJb SINE Alu 1 304 -8 1530 143 18 94 chr1 6796574 6796902 -235867451 - AluJo SINE Alu -9 303 1 285 328 29 23 chr1 6797071 6797245 -235867108 - L2 LINE L2 -2888 426 252 693 306 58 42 chr1 6797293 6797457 -235866896 - L2 LINE L2 0 3313 3153 3222 66 50 0 chr1 6797457 6797839 -235866514 + MLT2A1 LTR ERVL 1 407 -37 336 48 0 0 chr1 6797839 6797881 -235866472 + (TA)n Simple_repeat Simple_repeat 2 43 0 3222 66 50 0 chr1 6797881 6797921 -235866432 + MLT2A1 LTR ERVL 407 444 0 693 306 58 42 chr1 6797921 6798184 -235866169 - L2 LINE L2 -160 3153 2879 264 273 43 117 chr1 6798183 6798314 -235866039 - L2 LINE L2 -675 2639 2539 * 2079 127 0 29 chr1 6798314 6798628 -235865725 + AluJb SINE Alu 1 305 -7 264 273 43 117 chr1 6798628 6798778 -235865575 - L2 LINE L2 -775 2539 2379 2262 119 7 0 chr1 6799423 6799754 -235864599 - AluSx SINE Alu 0 333 1 207 97 0 0 chr1 6800008 6800039 -235864314 - L2 LINE L2 -3 3269 3239 244 278 112 58 chr1 6800376 6800417 -235863936 + L1ME LINE L1 5613 5650 -471 2106 123 14 0 chr1 6800417 6800710 -235863643 + AluSx SINE Alu 1 297 -15 244 278 112 58 chr1 6800710 6800909 -235863444 + L1ME LINE L1 5650 5866 -255 616 211 226 5 chr1 6800910 6801109 -235863244 - MIR SINE MIR -8 254 12 600 150 10 0 chr1 6801151 6801251 -235863102 + L1PA13 LINE L1 6052 6152 -11 701 212 117 35 chr1 6801301 6801532 -235862821 - MLT1K LTR MaLR -2 586 337 247 283 52 98 chr1 6801626 6801799 -235862554 - MLT1K LTR MaLR -392 196 32 1490 270 57 17 chr1 6802213 6802631 -235861722 - LTR16A LTR ERVL 0 450 16 647 261 75 37 chr1 6802679 6802856 -235861497 - L1MEd LINE L1 -3627 2502 2333 1854 186 0 3 chr1 6802856 6803191 -235861162 - AluSx SINE Alu 0 312 1 647 261 75 37 chr1 6803191 6803388 -235860965 - L1MEd LINE L1 -3796 2333 2114 1561 95 0 14 chr1 6803734 6803945 -235860408 - AluSc SINE Alu 0 309 102 883 259 119 99 chr1 6803952 6804311 -235860042 - L1MEd LINE L1 -4957 1162 811 1151 115 8 111 chr1 6804311 6804545 -235859808 - L1PB4 LINE L1 -1 6155 5946 883 259 119 99 chr1 6804545 6804852 -235859501 - L1MEd LINE L1 -5308 811 511 405 0 0 0 chr1 6804852 6804897 -235859456 + (TC)n Simple_repeat Simple_repeat 2 46 0 2174 114 0 3 chr1 6804898 6805188 -235859165 - AluSq SINE Alu -24 289 1 883 259 119 99 chr1 6805188 6805395 -235858958 - L1MEd LINE L1 -5607 512 269 1262 176 38 0 chr1 6805429 6805639 -235858714 - MER58A DNA MER1_type -6 218 1 346 323 35 25 chr1 6805639 6805840 -235858513 - L1MEd LINE L1 -5874 245 43 2128 95 0 0 chr1 6805847 6806109 -235858244 - AluSc SINE Alu -47 262 1 741 177 8 0 chr1 6806109 6806233 -235858120 - L1MC3 LINE L1 -420 7365 7241 936 194 0 6 chr1 6806436 6806601 -235857752 + FAM SINE Alu 1 164 -11 1879 126 7 15 chr1 6806683 6806952 -235857401 - AluSx SINE Alu -45 267 1 2191 59 0 0 chr1 6806985 6807239 -235857114 + AluY SINE Alu 44 297 -14 2498 73 3 0 chr1 6807524 6807827 -235856526 + AluSp SINE Alu 1 304 -9 2028 116 26 0 chr1 6808360 6808662 -235855691 + AluSx SINE Alu 1 310 -2 709 93 19 0 chr1 6810233 6810340 -235854013 + L1MA2 LINE L1 6037 6145 -159 1311 59 24 0 chr1 6810401 6810571 -235853782 + L1MA3 LINE L1 6132 6305 0 6262 40 3 0 chr1 6810849 6811621 -235852732 - L1PA5 LINE L1 0 6154 5409 2158 129 0 3 chr1 6812150 6812460 -235851893 - AluSx SINE Alu -3 309 1 2067 123 4 0 chr1 6812510 6812786 -235851567 + AluSg SINE Alu 1 277 -33 261 0 0 0 chr1 6812788 6812817 -235851536 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 952 203 48 84 chr1 6812823 6813202 -235851151 - MLT1B LTR MaLR -25 365 1 1146 259 68 28 chr1 6813202 6813703 -235850650 + L2 LINE L2 2327 2847 -467 21 0 0 0 chr1 6813747 6813768 -235850585 + AT_rich Low_complexity Low_complexity 1 21 0 2246 81 3 27 chr1 6813769 6814065 -235850288 - AluSx SINE Alu -23 289 1 2006 141 0 34 chr1 6814065 6814249 -235850104 - AluJb SINE Alu -3 309 139 2360 94 0 0 chr1 6814249 6814546 -235849807 - AluSx SINE Alu -15 297 1 2006 141 0 34 chr1 6814546 6814681 -235849672 - AluJb SINE Alu -173 139 1 528 229 33 26 chr1 6814692 6814845 -235849508 - L1MB8 LINE L1 -3 6175 6022 2192 96 0 17 chr1 6814924 6815216 -235849137 + AluSq SINE Alu 23 309 -4 575 234 289 7 chr1 6815222 6815526 -235848827 + L2 LINE L2 2921 3310 -3 1513 170 69 24 chr1 6816037 6816325 -235848028 - AluJo SINE Alu -11 301 1 21 0 0 0 chr1 6816638 6816659 -235847694 + AT_rich Low_complexity Low_complexity 1 21 0 1947 127 0 0 chr1 6816676 6816935 -235847418 + AluSq SINE Alu 1 259 -54 2246 108 13 0 chr1 6817195 6817502 -235846851 - AluSx SINE Alu -1 311 1 1960 125 26 26 chr1 6817521 6817825 -235846528 - AluJb SINE Alu -8 304 1 566 286 171 26 chr1 6818003 6818223 -235846130 - L2 LINE L2 0 3313 3126 2149 120 0 7 chr1 6818223 6818524 -235845829 - AluSx SINE Alu -13 299 1 566 286 171 26 chr1 6818524 6818729 -235845624 - L2 LINE L2 -187 3126 2826 24 0 0 0 chr1 6818949 6818973 -235845380 + AT_rich Low_complexity Low_complexity 1 24 0 574 103 10 10 chr1 6819705 6819802 -235844551 + (TTCC)n Simple_repeat Simple_repeat 4 100 0 2352 100 3 6 chr1 6819803 6820114 -235844239 - AluSp SINE Alu -3 310 1 372 312 24 0 chr1 6820274 6820399 -235843954 + L2 LINE L2 3144 3271 -1 2290 102 0 7 chr1 6820415 6820720 -235843633 + AluSq SINE Alu 1 303 -10 2042 145 16 10 chr1 6821104 6821414 -235842939 - AluJb SINE Alu 0 312 1 669 200 23 8 chr1 6821506 6821636 -235842717 - AluJo SINE Alu -178 134 3 207 139 0 0 chr1 6821919 6821955 -235842398 + (TAG)n Simple_repeat Simple_repeat 1 36 0 1827 150 0 41 chr1 6821957 6822050 -235842303 + AluJb SINE Alu 1 96 -216 2321 105 0 16 chr1 6822050 6822364 -235841989 + AluSq SINE Alu 1 309 -4 1827 150 0 41 chr1 6822364 6822564 -235841789 + AluJb SINE Alu 96 282 -30 2149 110 0 0 chr1 6822581 6822901 -235841452 + AluSx SINE Alu 1 320 0 756 263 43 0 chr1 6822901 6823110 -235841243 - MIR SINE MIR -23 239 22 257 264 16 91 chr1 6823571 6823692 -235840661 + MER5C DNA MER1_type 8 119 -205 210 91 0 0 chr1 6823856 6823889 -235840464 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 185 255 0 0 chr1 6823891 6823938 -235840415 + MER5C DNA MER1_type 278 324 0 2018 103 26 36 chr1 6824023 6824325 -235840028 - AluSx SINE Alu -13 299 1 1127 167 112 73 chr1 6824354 6824641 -235839712 - AluJo SINE Alu -3 299 2 1026 128 116 6 chr1 6824799 6824971 -235839382 + AluJb SINE Alu 113 303 -9 723 176 57 23 chr1 6825108 6825284 -235839069 - MIR SINE MIR -14 248 67 2132 116 3 0 chr1 6825863 6826156 -235838197 - AluSx SINE Alu -18 294 1 2121 136 0 3 chr1 6826564 6826874 -235837479 + AluSx SINE Alu 1 309 -3 2332 101 51 28 chr1 6827138 6827494 -235836859 - THE1B LTR MaLR 0 364 1 2378 86 3 22 chr1 6827579 6827892 -235836461 - AluSp SINE Alu -6 307 1 339 259 44 38 chr1 6828014 6828172 -235836181 + L2 LINE L2 2623 2781 -533 273 119 0 0 chr1 6828422 6828464 -235835889 + (TCC)n Simple_repeat Simple_repeat 1 42 0 1298 129 0 0 chr1 6828464 6828642 -235835711 - AluSg/x SINE Alu -1 311 134 2237 124 0 0 chr1 6828642 6828948 -235835405 - AluSx SINE Alu -6 306 1 691 265 34 0 chr1 6829053 6829257 -235835096 + MIR SINE MIR 1 211 -51 2185 111 0 7 chr1 6829484 6829790 -235834563 - AluSx SINE Alu -8 304 1 2114 83 7 4 chr1 6829986 6830264 -235834089 + AluSx SINE Alu 1 279 -33 489 17 0 0 chr1 6830264 6830322 -235834031 + (CA)n Simple_repeat Simple_repeat 1 58 0 623 306 45 27 chr1 6830394 6830730 -235833623 - L1ME LINE L1 -380 5741 5400 2438 99 3 0 chr1 6830789 6831101 -235833252 - AluSq SINE Alu 0 313 1 216 0 0 0 chr1 6831213 6831237 -235833116 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4718 114 4 4 chr1 6831238 6831922 -235832431 - L1PA16 LINE L1 -13 6153 5470 762 100 0 0 chr1 6831922 6832022 -235832331 - FRAM SINE Alu -18 158 59 1986 116 0 58 chr1 6833023 6833333 -235831020 - AluSx SINE Alu -20 292 1 362 289 15 55 chr1 6833617 6833818 -235830535 + MIR SINE MIR 20 212 -50 1389 106 0 0 chr1 6833847 6834026 -235830327 - AluSx SINE Alu -133 179 1 222 188 0 42 chr1 6834037 6834085 -235830268 + L2 LINE L2 3175 3220 -93 385 242 73 16 chr1 6834201 6834325 -235830028 - L2 LINE L2 -1 3312 3182 2041 140 27 0 chr1 6834575 6834868 -235829485 - AluSx SINE Alu -11 301 1 197 281 18 0 chr1 6835014 6835071 -235829282 - L2 LINE L2 -2 3311 3254 2238 124 0 0 chr1 6835212 6835519 -235828834 - AluSx SINE Alu -5 307 1 888 117 0 0 chr1 6835910 6836030 -235828323 + AluSq/x SINE Alu 1 120 -192 198 0 0 0 chr1 6836031 6836053 -235828300 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2386 115 0 0 chr1 6836249 6836561 -235827792 + AluSx SINE Alu 1 312 0 2199 117 7 0 chr1 6836588 6836897 -235827456 + AluSx SINE Alu 1 311 -1 3775 139 78 27 chr1 6836897 6837484 -235826869 + L1MA4 LINE L1 5044 5700 -600 2110 141 3 0 chr1 6837484 6837789 -235826564 + AluSx SINE Alu 1 306 -6 3775 139 78 27 chr1 6837789 6838152 -235826201 + L1MA4 LINE L1 5700 6043 -257 1246 71 88 6 chr1 6838161 6838331 -235826022 - MER84 LTR ERVI 0 507 324 871 70 0 0 chr1 6838331 6838446 -235825907 + MER84-int LTR ERV1 1242 1356 -3598 753 83 148 0 chr1 6838446 6838554 -235825799 - MER84 LTR ERVI -383 124 1 1140 171 25 25 chr1 6838554 6838793 -235825560 + L1MA4 LINE L1 6054 6292 -8 21 0 0 0 chr1 6840447 6840468 -235823885 + AT_rich Low_complexity Low_complexity 1 21 0 1681 164 39 4 chr1 6840784 6841065 -235823288 - AluJb SINE Alu -15 297 7 1977 128 30 3 chr1 6841079 6841383 -235822970 - AluSx SINE Alu 0 312 1 2220 106 7 3 chr1 6841528 6841820 -235822533 - AluSg1 SINE Alu -16 293 1 647 233 158 0 chr1 6841919 6842121 -235822232 - MIR SINE MIR -21 241 8 470 289 130 36 chr1 6842232 6842509 -235821844 - L1MC/D LINE L1 -2097 5711 5409 338 259 43 26 chr1 6842567 6842683 -235821670 + MER94 DNA DNA 1 118 -16 974 176 0 0 chr1 6842801 6842949 -235821404 + FRAM SINE Alu 1 146 -30 303 266 0 0 chr1 6843334 6843413 -235820940 + (TGGG)n Simple_repeat Simple_repeat 3 81 0 913 198 48 0 chr1 6843509 6843696 -235820657 - AluJb SINE Alu -4 308 113 1697 138 20 79 chr1 6844123 6844428 -235819925 + AluJo SINE Alu 1 287 -25 4428 111 33 6 chr1 6844504 6845195 -235819158 - L1MA5A LINE L1 -1 6296 5587 1683 188 0 7 chr1 6845344 6845636 -235818717 + AluJo SINE Alu 1 290 -22 2193 125 16 0 chr1 6845735 6846040 -235818313 + AluSg SINE Alu 1 310 0 2040 151 0 3 chr1 6846225 6846523 -235817830 - AluSx SINE Alu -15 297 1 271 312 72 8 chr1 6846826 6846951 -235817402 - L1MC/D LINE L1 -1949 5859 5727 2311 92 3 0 chr1 6847291 6847584 -235816769 - AluSg SINE Alu -16 294 1 1666 166 17 40 chr1 6847615 6847916 -235816437 + AluJo SINE Alu 1 294 -18 2411 60 0 0 chr1 6849357 6849669 -235814684 + AluSq SINE Alu 1 312 0 192 152 0 0 chr1 6849681 6849714 -235814639 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 1566 159 31 31 chr1 6849886 6850176 -235814177 + AluJo SINE Alu 1 290 -22 342 60 0 20 chr1 6850281 6850331 -235814022 - MADE1 DNA Mariner 0 80 32 936 146 0 0 chr1 6850333 6850463 -235813890 + AluSx SINE Alu 6 135 -178 1948 114 10 40 chr1 6850463 6850762 -235813591 + AluSx SINE Alu 1 290 -22 307 146 427 0 chr1 6850766 6850848 -235813505 + Charlie1 DNA MER1_type 2642 2758 -3 1940 91 4 0 chr1 6851197 6851449 -235812904 + AluSq SINE Alu 60 312 -1 1417 89 0 6 chr1 6851449 6851629 -235812724 + AluSx SINE Alu 118 296 -14 1723 157 0 57 chr1 6851730 6852048 -235812305 + AluJo SINE Alu 1 300 -12 2275 116 7 0 chr1 6852051 6852361 -235811992 + AluSx SINE Alu 1 312 0 2029 128 6 16 chr1 6852391 6852703 -235811650 + AluSx SINE Alu 1 309 -3 189 238 181 29 chr1 6854238 6854343 -235810010 + L2 LINE L2 3190 3310 -3 1976 148 3 3 chr1 6855224 6855529 -235808824 + AluJb SINE Alu 1 305 -7 453 291 137 24 chr1 6855708 6856000 -235808353 + L2 LINE L2 2989 3313 0 242 309 0 0 chr1 6856054 6856135 -235808218 + MIR SINE MIR 59 139 -123 362 192 68 89 chr1 6856264 6856410 -235807943 + MIR SINE MIR 95 237 -25 796 249 86 20 chr1 6856903 6857148 -235807205 + MIR SINE MIR 2 262 0 2222 102 31 0 chr1 6857958 6858251 -235806102 + AluSp SINE Alu 1 302 -11 192 40 0 0 chr1 6858255 6858280 -235806073 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 189 303 146 18 chr1 6859795 6859960 -235804393 - L2 LINE L2 -903 2411 2226 27 0 0 0 chr1 6860411 6860438 -235803915 + GC_rich Low_complexity Low_complexity 1 27 0 364 188 188 62 chr1 6861730 6861858 -235802495 - L2 LINE L2 -2 3270 3127 317 301 46 25 chr1 6867720 6867852 -235796501 + MIR SINE MIR 23 153 -55 268 309 147 16 chr1 6868327 6868518 -235795835 - L2 LINE L2 -550 2764 2549 2052 100 0 45 chr1 6869175 6869484 -235794869 - AluSp SINE Alu -18 295 1 2131 122 17 0 chr1 6869697 6869993 -235794360 - AluSx SINE Alu -11 301 1 1362 170 38 88 chr1 6870000 6870318 -235794035 - LTR9 LTR ERV1 -310 302 1 627 195 118 99 chr1 6870330 6870737 -235793616 + LTR48 LTR ERV1 173 787 0 1957 97 7 70 chr1 6870870 6871169 -235793184 + AluSx SINE Alu 1 280 -32 2027 111 0 28 chr1 6871552 6871871 -235792482 - AluSx SINE Alu 0 311 1 589 182 10 0 chr1 6871871 6871970 -235792383 - FLAM_A SINE Alu -8 134 35 415 141 33 11 chr1 6871979 6872071 -235792282 - AluSc SINE Alu -14 295 202 232 139 0 0 chr1 6972071 6972107 -235692246 - FLAM_A SINE Alu -103 36 1 295 79 0 111 chr1 6972107 6972170 -235692183 + L1MA8 LINE L1 6125 6180 -111 2210 94 0 0 chr1 6972183 6972471 -235691882 + AluY SINE Alu 1 288 -23 232 294 12 24 chr1 6972609 6972694 -235691659 - MLT1K LTR MaLR -494 94 11 2293 98 0 0 chr1 6972701 6973003 -235691350 + AluSx SINE Alu 3 297 -15 963 96 15 3 chr1 6973136 6973281 -235691072 - FRAM SINE Alu -30 146 18 1587 176 39 33 chr1 6973424 6973731 -235690622 + AluJb SINE Alu 1 309 -3 1273 157 0 32 chr1 6973746 6973963 -235690390 + AluJo SINE Alu 1 210 -102 1429 84 0 31 chr1 6973979 6974170 -235690183 - AluSq SINE Alu -52 261 77 889 143 27 27 chr1 6974172 6974319 -235690034 + AluJo/FRAM SINE Alu 156 302 -10 793 117 14 34 chr1 6974372 6974812 -235689541 + (TG)n Simple_repeat Simple_repeat 1 431 0 967 76 45 7 chr1 6974830 6975462 -235688891 + (TG)n Simple_repeat Simple_repeat 1 831 0 739 208 79 82 chr1 6975462 6975920 -235688433 - MLT2B1 LTR ERVL -40 449 1 739 293 18 71 chr1 6975990 6976287 -235688066 - ERVL LTR ERVL -2577 3187 2913 2501 78 0 0 chr1 6976287 6976596 -235687757 + AluSg SINE Alu 1 309 -1 739 293 18 71 chr1 6976596 6976680 -235687673 - ERVL LTR ERVL -2851 2913 2826 2514 58 0 0 chr1 6976804 6977097 -235687256 + AluY SINE Alu 1 293 -18 1854 148 11 0 chr1 6977096 6977374 -235686979 - AluJb SINE Alu -31 281 1 * 1521 155 0 0 chr1 6978420 6978646 -235685707 - AluJb SINE Alu -9 303 78 1904 112 94 0 chr1 6979258 6979535 -235684818 + AluSx SINE Alu 1 303 -9 304 181 24 0 chr1 6979634 6979717 -235684636 + (TA)n Simple_repeat Simple_repeat 1 85 0 303 28 0 0 chr1 6979768 6979804 -235684549 + (CA)n Simple_repeat Simple_repeat 2 37 0 938 159 62 46 chr1 6979813 6980111 -235684242 + MER21A LTR ERV1 34 356 -507 2139 103 0 0 chr1 6980135 6980408 -235683945 + AluSx SINE Alu 25 297 -15 1836 146 25 0 chr1 6980461 6980735 -235683618 - AluJb SINE Alu -31 281 1 2522 86 0 0 chr1 6981741 6982054 -235682299 + AluSq SINE Alu 1 313 0 295 308 75 51 chr1 6982063 6982277 -235682076 - L2 LINE L2 -530 2784 2566 1787 147 40 3 chr1 6982845 6983145 -235681208 + AluJb SINE Alu 1 311 -1 2511 70 0 3 chr1 6983610 6983911 -235680442 + AluSp SINE Alu 1 300 -13 1204 113 24 0 chr1 6983911 6984079 -235680274 + AluSp SINE Alu 134 305 -8 2709 94 13 8 chr1 6984232 6984605 -235679748 + THE1C LTR MaLR 1 375 0 3631 109 73 23 chr1 6984948 6984978 -235679375 + LTR24C LTR ERV1 1 28 -607 828 99 7 92 chr1 6984978 6985119 -235679234 + FLAM_C SINE Alu 5 133 0 3631 109 73 23 chr1 6985119 6985691 -235678662 + LTR24C LTR ERV1 28 633 -2 2290 103 0 3 chr1 6985765 6986067 -235678286 + AluSq SINE Alu 1 301 -12 385 136 61 0 chr1 6986215 6986281 -235678072 - Charlie4 DNA MER1_type -5 1956 1887 2106 103 17 3 chr1 6986288 6986579 -235677774 + AluSc SINE Alu 1 295 -14 1042 84 15 0 chr1 6986579 6986710 -235677643 + AluSq/x SINE Alu 1 133 -180 354 175 10 21 chr1 6987033 6987130 -235677223 + (TA)n Simple_repeat Simple_repeat 2 97 0 304 196 0 0 chr1 6987171 6987227 -235677126 + L1MC4 LINE L1 6648 6703 -1339 2249 110 3 0 chr1 6987230 6987538 -235676815 - AluSp SINE Alu -3 310 2 623 140 0 10 chr1 6987678 6987778 -235676575 - AluSp/q SINE Alu -15 298 200 1869 126 27 33 chr1 6987937 6988238 -235676115 - AluSx SINE Alu -13 299 1 1978 135 17 7 chr1 6988267 6988563 -235675790 + AluY SINE Alu 1 299 -12 780 68 0 0 chr1 6989022 6989125 -235675228 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 484 173 0 17 chr1 6989322 6989421 -235674932 - L1MC4 LINE L1 0 8042 7848 207 319 87 0 chr1 6989493 6989562 -235674791 + MIR SINE MIR 71 145 -63 1094 168 84 26 chr1 6989732 6989958 -235674395 - AluJb SINE Alu -2 310 72 205 350 150 0 chr1 6990689 6990789 -235673564 + L2 LINE L2 3123 3237 -35 186 43 0 0 chr1 6991162 6991185 -235673168 + (T)n Simple_repeat Simple_repeat 1 23 0 2317 95 0 10 chr1 6991285 6991589 -235672764 - AluSc SINE Alu -6 303 3 483 33 0 0 chr1 6991902 6991963 -235672390 + (TG)n Simple_repeat Simple_repeat 2 62 0 414 0 0 0 chr1 6992027 6992073 -235672280 + (TG)n Simple_repeat Simple_repeat 1 46 0 2130 127 7 0 chr1 6992382 6992682 -235671671 + AluSx SINE Alu 1 302 -10 2266 64 0 0 chr1 6992683 6992950 -235671403 + AluY SINE Alu 38 304 -7 2030 154 28 11 chr1 6993397 6993753 -235670600 - THE1B LTR MaLR 0 364 3 1925 156 0 13 chr1 6996310 6996611 -235667742 + AluJb SINE Alu 1 297 -15 1420 221 7 29 chr1 6996890 6997198 -235667155 + AluJo SINE Alu 1 301 -1 445 168 262 54 chr1 6997503 6997652 -235666701 - MER58B DNA MER1_type 0 341 162 284 134 34 84 chr1 6998141 6998260 -235666093 + A-rich Low_complexity Low_complexity 4 116 0 1892 143 10 13 chr1 6998526 6998826 -235665527 - AluJo SINE Alu -13 299 1 21 0 0 0 chr1 6999026 6999047 -235665306 + AT_rich Low_complexity Low_complexity 1 21 0 403 272 7 51 chr1 6999441 6999598 -235664755 + MIR SINE MIR 49 197 -65 388 239 111 0 chr1 6999886 7000003 -235664350 + MER5C DNA MER1_type 1 130 -194 2703 100 0 14 chr1 7000070 7000439 -235663914 - THE1B LTR MaLR 0 364 1 274 161 32 48 chr1 7000538 7000600 -235663753 - MLT1J LTR MaLR -450 61 1 721 189 0 0 chr1 7000975 7001097 -235663256 - FLAM_C SINE Alu -16 127 6 1829 151 0 20 chr1 7001130 7001435 -235662918 + AluJb SINE Alu 1 299 -13 183 80 0 0 chr1 7002248 7002273 -235662080 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1974 220 53 19 chr1 7003561 7004034 -235660319 - LTR42 LTR ERVL 0 495 7 211 262 213 16 chr1 7004040 7004162 -235660191 + L2 LINE L2 3168 3313 0 2050 137 3 3 chr1 7004245 7004544 -235659809 - AluSx SINE Alu -13 299 1 2150 134 0 0 chr1 7004554 7004860 -235659493 - AluSx SINE Alu -6 306 1 455 217 25 17 chr1 7005575 7005695 -235658658 + L2 LINE L2 3193 3313 0 336 275 75 8 chr1 7006385 7006505 -235657848 - MIR SINE MIR -112 150 23 318 218 137 48 chr1 7007210 7007334 -235657019 - L1ME3A LINE L1 0 6170 6036 2116 247 96 50 chr1 7007473 7008496 -235655857 - L1MC5 LINE L1 -431 7530 6476 2009 128 10 7 chr1 7008537 7008834 -235655519 - AluSx SINE Alu -12 300 3 1520 181 40 14 chr1 7009150 7009426 -235654927 - AluJo SINE Alu -27 285 3 42 20 0 0 chr1 7009984 7010033 -235654320 + AT_rich Low_complexity Low_complexity 1 49 0 1221 117 6 0 chr1 7010962 7011133 -235653220 - AluSq SINE Alu -12 301 130 961 162 56 178 chr1 7011167 7011488 -235652865 + AluJo SINE Alu 1 282 -30 21 36 0 0 chr1 7011488 7011516 -235652837 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr1 7011741 7011764 -235652589 + AT_rich Low_complexity Low_complexity 1 23 0 1120 213 138 27 chr1 7011962 7012673 -235651680 + L1ME1 LINE L1 4826 5621 -543 1370 141 89 56 chr1 7012710 7012979 -235651374 + AluJb SINE Alu 11 288 -24 319 189 0 40 chr1 7013003 7013077 -235651276 + L1ME2 LINE L1 5978 6048 -116 2088 122 7 7 chr1 7013677 7013980 -235650373 - AluSx SINE Alu -9 303 1 2018 126 14 0 chr1 7015595 7015889 -235648464 - AluSx SINE Alu -14 298 1 23 33 0 0 chr1 7016465 7016495 -235647858 + AT_rich Low_complexity Low_complexity 1 30 0 2349 63 23 3 chr1 7016511 7016813 -235647540 - AluY SINE Alu -2 309 2 522 308 100 21 chr1 7016815 7017055 -235647298 - L1MC5 LINE L1 -2147 5661 5403 1207 249 84 40 chr1 7017476 7018013 -235646340 - L1MC4 LINE L1 -113 7695 7244 1383 158 83 18 chr1 7018013 7018139 -235646214 + AluJo SINE Alu 5 121 -191 252 0 0 0 chr1 7018139 7018167 -235646186 + (TA)n Simple_repeat Simple_repeat 2 29 0 1383 158 83 18 chr1 7018167 7018318 -235646035 + AluJo SINE Alu 121 300 -12 1207 249 84 40 chr1 7018318 7018402 -235645951 - L1MC4 LINE L1 -564 7244 7165 476 235 95 40 chr1 7018410 7018610 -235645743 - L1MC4 LINE L1 -958 7084 6874 877 259 114 21 chr1 7018774 7019106 -235645247 - L1ME3A LINE L1 -10 6160 5798 2146 55 0 12 chr1 7019106 7019361 -235644992 + AluY SINE Alu 52 303 -8 775 257 32 48 chr1 7019361 7019596 -235644757 + L1M4 LINE L1 2722 2952 -3194 1992 132 14 0 chr1 7019596 7019885 -235644468 + AluJb SINE Alu 1 293 -19 775 257 32 48 chr1 7019885 7019964 -235644389 + L1M4 LINE L1 2952 3031 -3115 422 358 59 4 chr1 7020080 7020334 -235644019 + L1ME1 LINE L1 5680 5947 -223 448 242 17 50 chr1 7020967 7021087 -235643266 + L2 LINE L2 3182 3297 -16 607 146 62 31 chr1 7021450 7021580 -235642773 + L1ME1 LINE L1 6027 6160 -6 1367 170 77 64 chr1 7023003 7023342 -235641011 + Charlie1b DNA MER1_type 57 405 -2356 2357 86 16 0 chr1 7023342 7023645 -235640708 - AluSc SINE Alu -1 308 1 1367 170 77 64 chr1 7023645 7023759 -235640594 + Charlie1b DNA MER1_type 405 516 -7 1715 209 0 0 chr1 7023796 7024092 -235640261 - AluJo SINE Alu -16 296 1 198 296 136 0 chr1 7024653 7024778 -235639575 - L3 LINE CR1 -710 867 726 325 96 19 180 chr1 7024784 7024941 -235639412 - MLT2B3 LTR ERVL 0 554 393 1284 196 151 16 chr1 7024941 7025318 -235639035 - MSTC LTR MaLR 0 428 1 * 2228 197 23 7 chr1 7025318 7025752 -235638601 - MLT2B3 LTR ERVL -107 447 7 190 235 0 39 chr1 7025882 7025933 -235638420 - MIR3 SINE MIR -32 176 128 2192 105 3 0 chr1 7026614 7026910 -235637443 + AluY SINE Alu 1 297 -14 2362 98 0 0 chr1 7027058 7027363 -235636990 - AluSg1 SINE Alu -4 305 1 2206 99 0 13 chr1 7027972 7028276 -235636077 - AluSq SINE Alu -11 302 3 2529 181 87 12 chr1 7028361 7028831 -235635522 - L1MA7 LINE L1 0 6291 5759 543 69 0 0 chr1 7028831 7028903 -235635450 + (CA)n Simple_repeat Simple_repeat 2 73 0 2529 181 87 12 chr1 7028903 7029074 -235635279 - L1MA7 LINE L1 -532 5759 5602 452 162 253 0 chr1 7029177 7029276 -235635077 + Tigger4(Zombi) DNA MER2_type 1 124 -2607 1242 114 5 5 chr1 7029279 7029480 -235634873 + Tigger4(Zombi) DNA MER2_type 2531 2731 0 1027 157 67 17 chr1 7031018 7031225 -235633128 + AluJo SINE Alu 96 311 0 740 188 91 23 chr1 7031619 7031795 -235632558 - MIR SINE MIR -54 208 21 323 324 153 0 chr1 7033006 7033182 -235631171 - MIR SINE MIR -6 256 54 1106 171 23 14 chr1 7033313 7033529 -235630824 + MER20 DNA MER1_type 1 218 -1 372 107 18 0 chr1 7033731 7033787 -235630566 - MER34C LTR ERV1 -492 93 37 1463 87 0 0 chr1 7034398 7034583 -235629770 - AluSp SINE Alu -6 307 123 2185 114 3 13 chr1 7034604 7034919 -235629434 + AluSx SINE Alu 1 312 0 290 305 28 21 chr1 7036453 7036594 -235627759 - MIR3 SINE MIR -53 155 14 205 205 0 0 chr1 7036634 7036673 -235627680 + T-rich Low_complexity Low_complexity 1 39 0 336 193 0 0 chr1 7037552 7037609 -235626744 + AluJ/FLAM SINE Alu 1 57 -245 274 270 27 18 chr1 7037668 7037779 -235626574 + L1MC4 LINE L1 7914 8025 -17 1070 195 69 8 chr1 7038319 7038580 -235625773 - MER58 DNA MER1_type -2140 280 4 1983 162 26 0 chr1 7038995 7039298 -235625055 - AluJo SINE Alu -1 311 1 2079 107 3 30 chr1 7039508 7039807 -235624546 - AluSx SINE Alu -21 291 1 219 286 79 0 chr1 7041923 7041986 -235622367 - MIR SINE MIR -161 101 34 2355 83 0 3 chr1 7042855 7043178 -235621175 + AluSx SINE Alu 1 312 0 6027 239 100 29 chr1 7043508 7044701 -235619652 - L1MC4a LINE L1 -1 7807 6700 2124 114 0 7 chr1 7044701 7045000 -235619353 - AluSg1 SINE Alu -12 297 1 6027 239 100 29 chr1 7045000 7046177 -235618176 - L1MC4a LINE L1 -1108 6700 5269 382 305 58 13 chr1 7046199 7046353 -235618000 - L1MC4a LINE L1 -913 5233 5073 256 273 76 30 chr1 7046578 7046776 -235617577 - L1P LINE L1 -1488 4658 4452 2168 127 13 0 chr1 7046829 7047137 -235617216 - AluSx SINE Alu 0 312 1 205 0 54 54 chr1 7047385 7047422 -235616931 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1723 189 30 0 chr1 7047424 7047720 -235616633 + AluJb SINE Alu 3 307 -5 2276 113 0 3 chr1 7047720 7048020 -235616333 + AluSg SINE Alu 1 299 -11 44 0 0 0 chr1 7048020 7048064 -235616289 + AT_rich Low_complexity Low_complexity 1 44 0 238 304 108 0 chr1 7048159 7048261 -235616092 + Charlie2a DNA MER1_type 16 128 -2654 517 296 101 20 chr1 7048344 7048689 -235615664 + Charlie2a DNA MER1_type 262 634 -2228 1155 201 145 15 chr1 7048958 7049352 -235615001 - L1ME2 LINE L1 -24 6140 5696 333 132 9 0 chr1 7049472 7049528 -235614825 + L1M4 LINE L1 3773 3832 -2314 337 218 135 23 chr1 7049625 7049758 -235614595 + L1M4 LINE L1 4020 4167 -1979 812 190 71 16 chr1 7049924 7050108 -235614245 + MER20 DNA MER1_type 26 219 0 453 183 11 21 chr1 7050587 7050634 -235613719 + MER3 DNA MER1_type 2 47 -162 391 204 7 120 chr1 7050634 7050776 -235613577 - MER3 DNA MER1_type 0 209 84 929 176 7 0 chr1 7050897 7051045 -235613308 + AluJo SINE Alu 1 149 -163 638 186 0 25 chr1 7051045 7051163 -235613190 - AluJb SINE Alu -197 115 1 240 35 0 0 chr1 7052541 7052570 -235611783 + (TG)n Simple_repeat Simple_repeat 2 30 0 1599 147 0 63 chr1 7053290 7053590 -235610763 + AluJb SINE Alu 1 281 -31 235 0 57 0 chr1 7053598 7053633 -235610720 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 2245 116 3 3 chr1 7053999 7054309 -235610044 + AluSg SINE Alu 1 310 0 803 287 40 12 chr1 7056117 7056445 -235607908 + MER46C DNA MER2_type 2 338 0 1650 191 0 3 chr1 7056483 7056781 -235607572 - AluJb SINE Alu -14 298 2 324 272 48 16 chr1 7057354 7057479 -235606874 + MIR SINE MIR 31 159 -103 2428 71 0 0 chr1 7057581 7057877 -235606476 - AluSc SINE Alu -13 296 1 217 286 0 0 chr1 7057901 7057950 -235606403 + CT-rich Low_complexity Low_complexity 3 51 0 1592 218 102 54 chr1 7058188 7058546 -235605807 - L1MC4 LINE L1 -149 7893 7491 640 186 0 161 chr1 7058546 7058745 -235605608 - FAM SINE Alu -8 167 1 1592 218 102 54 chr1 7058745 7059011 -235605342 - L1MC4 LINE L1 -551 7491 7239 613 262 87 12 chr1 7059012 7059421 -235604932 - L1MC4 LINE L1 -961 7081 6469 409 328 64 23 chr1 7060104 7060369 -235603984 + L1MEd LINE L1 538 813 -5306 418 286 135 33 chr1 7060379 7060624 -235603729 - MLT1J LTR MaLR -55 456 187 1930 126 7 48 chr1 7060671 7060808 -235603545 + AluSx SINE Alu 1 121 -191 2214 100 3 10 chr1 7060808 7061107 -235603246 + AluSq SINE Alu 1 297 -16 1930 126 7 48 chr1 7061107 7061263 -235603090 + AluSx SINE Alu 121 282 -30 352 309 103 17 chr1 7061345 7061509 -235602844 + L1 LINE L1 3595 3768 -2378 1533 110 53 8 chr1 7061629 7061893 -235602460 - L1MA2 LINE L1 0 6304 6029 251 302 26 73 chr1 7061896 7062088 -235602265 + L1 LINE L1 3908 4090 -2056 1579 181 43 0 chr1 7062245 7062526 -235601827 - AluSx SINE Alu -15 297 5 846 95 0 0 chr1 7062569 7062695 -235601658 + (TAGA)n Simple_repeat Simple_repeat 3 128 0 2892 9 0 0 chr1 7062712 7063028 -235601325 + AluYb8 SINE Alu 1 316 -2 2306 82 0 35 chr1 7064103 7064418 -235599935 + AluY SINE Alu 1 304 -7 21 0 0 0 chr1 7064464 7064485 -235599868 + AT_rich Low_complexity Low_complexity 1 21 0 352 222 11 33 chr1 7064514 7064604 -235599749 - L1MC4 LINE L1 -29 8013 7926 1062 150 0 0 chr1 7064656 7064829 -235599524 + MER46B DNA MER2_type 2 49 -187 1354 221 66 48 chr1 7064880 7064915 -235599438 - L1MC4 LINE L1 -98 7944 7911 824 180 97 61 chr1 7064915 7065143 -235599210 - MER46A DNA MER2_type 0 236 1 1354 221 66 48 chr1 7065143 7065622 -235598731 - L1MC4 LINE L1 -131 7911 7421 1728 137 19 60 chr1 7070490 7070805 -235593548 - AluJb SINE Alu -10 302 1 2259 110 0 3 chr1 7070815 7071115 -235593238 - AluSq SINE Alu -14 299 1 265 248 142 35 chr1 7071759 7071900 -235592453 + L2 LINE L2 3158 3313 0 433 259 132 48 chr1 7071909 7072137 -235592216 + MIR SINE MIR 14 260 -2 32 0 0 0 chr1 7072196 7072228 -235592125 + AT_rich Low_complexity Low_complexity 1 32 0 658 193 0 0 chr1 7072236 7072345 -235592008 - FLAM_C SINE Alu -34 109 1 198 0 0 0 chr1 7072928 7072950 -235591403 + (T)n Simple_repeat Simple_repeat 1 22 0 246 326 44 37 chr1 7073386 7073521 -235590832 + MIR3 SINE MIR 72 207 -1 220 200 0 0 chr1 7073605 7073650 -235590703 + T-rich Low_complexity Low_complexity 4 48 0 221 357 12 12 chr1 7073867 7073951 -235590402 - L2 LINE L2 -73 3199 3116 234 333 78 7 chr1 7074094 7074235 -235590118 - MIR SINE MIR -38 224 74 1092 145 12 6 chr1 7074264 7074436 -235589917 - AluJo SINE Alu -22 290 118 808 174 0 28 chr1 7074465 7074609 -235589744 - FLAM_C SINE Alu -2 141 2 207 100 0 0 chr1 7074750 7074780 -235589573 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 251 234 0 0 chr1 7074781 7074828 -235589525 - MER66A LTR ERV1 -142 336 290 237 179 45 60 chr1 7076506 7076573 -235587780 - L1MD3 LINE L1 -11 7984 7919 * 256 271 0 0 chr1 7076562 7076621 -235587732 - L1MD2 LINE L1 -103 6256 6198 958 234 102 0 chr1 7076624 7076880 -235587473 - L1MD2 LINE L1 -216 6143 5862 765 262 24 36 chr1 7077037 7077289 -235587064 + MIR SINE MIR 14 262 0 208 225 300 0 chr1 7077332 7077412 -235586941 + MIR SINE MIR 159 262 0 1734 149 19 38 chr1 7077455 7077770 -235586583 - AluSx SINE Alu -3 309 1 207 0 0 0 chr1 7078041 7078064 -235586289 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1690 118 110 0 chr1 7078066 7078329 -235586024 - AluSx SINE Alu -20 292 1 1517 151 61 29 chr1 7078331 7078609 -235585744 - AluJo SINE Alu -18 294 8 228 175 222 0 chr1 7078722 7078785 -235585568 + MIR SINE MIR 186 262 0 2092 128 6 6 chr1 7078944 7079257 -235585096 - AluSq SINE Alu 0 313 1 3900 194 69 35 chr1 7079298 7079899 -235584454 + Charlie1 DNA MER1_type 1682 2329 -432 1836 124 0 4 chr1 7079899 7080180 -235584173 - AluSq SINE Alu 0 308 29 3900 194 69 35 chr1 7080180 7080513 -235583840 + Charlie1 DNA MER1_type 2329 2649 -112 21 0 0 0 chr1 7080525 7080546 -235583807 + AT_rich Low_complexity Low_complexity 1 21 0 297 120 0 0 chr1 7081255 7081305 -235583048 + Charlie1 DNA MER1_type 2706 2755 -6 2986 6 0 0 chr1 7081372 7081690 -235582663 + AluYb8 SINE Alu 1 318 0 201 74 0 0 chr1 7081911 7081938 -235582415 + (A)n Simple_repeat Simple_repeat 1 27 0 765 189 8 0 chr1 7082655 7082782 -235581571 + FLAM_C SINE Alu 5 132 -1 309 178 22 22 chr1 7083583 7083673 -235580680 + CT-rich Low_complexity Low_complexity 1 90 0 1643 159 52 3 chr1 7083890 7084179 -235580174 - AluJo SINE Alu -9 303 1 347 197 45 0 chr1 7084180 7084246 -235580107 + L2 LINE L2 3232 3300 -13 447 68 0 0 chr1 7084246 7084305 -235580048 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 1512 130 25 105 chr1 7084458 7084782 -235579571 + AluYb8 SINE Alu 1 298 -20 2064 148 52 27 chr1 7085232 7085636 -235578717 - L1MB3 LINE L1 -28 6155 5742 2228 117 3 3 chr1 7085666 7085974 -235578379 + AluSx SINE Alu 1 308 -4 2180 96 7 7 chr1 7085996 7086289 -235578064 + AluSx SINE Alu 1 293 -19 808 166 11 40 chr1 7086403 7086578 -235577775 - AluJb SINE Alu -6 306 137 433 242 45 32 chr1 7086755 7086912 -235577441 + MER104 DNA Tc2 6 164 -16 1782 156 25 0 chr1 7087886 7088161 -235576192 + AluJb SINE Alu 13 294 -18 1566 260 95 46 chr1 7088167 7088836 -235575517 - L1MC5 LINE L1 -36 7925 7215 2316 84 0 3 chr1 7088836 7089133 -235575220 - AluSg SINE Alu -14 296 1 1566 260 95 46 chr1 7089133 7089198 -235575155 - L1MC5 LINE L1 -746 7215 7155 779 281 38 61 chr1 7089263 7089948 -235574405 - L1MC5 LINE L1 -850 6958 6281 1888 232 56 52 chr1 7090021 7090567 -235573786 - L1MC5 LINE L1 -1862 5946 5394 6285 77 17 45 chr1 7090567 7092186 -235572167 - SVA Other Other -589 1386 213 1888 232 56 52 chr1 7092186 7092267 -235572086 - L1MC5 LINE L1 -2414 5394 5315 181 218 109 0 chr1 7092321 7092376 -235571977 - L2 LINE L2 -12 3260 3200 2150 101 0 3 chr1 7092415 7092743 -235571610 - AluSx SINE Alu 0 327 1 340 272 103 22 chr1 7092925 7093109 -235571244 + Charlie8 DNA MER1_type 15 213 -2204 367 218 26 0 chr1 7093166 7093244 -235571109 + MER33 DNA MER1_type 1 80 -244 339 224 0 0 chr1 7093246 7093322 -235571031 + MER33 DNA MER1_type 249 324 0 442 296 118 39 chr1 7093598 7093801 -235570552 - L1ME2 LINE L1 0 6164 5946 333 0 0 0 chr1 7093811 7093848 -235570505 + (TG)n Simple_repeat Simple_repeat 2 38 0 2458 103 0 0 chr1 7093857 7094167 -235570186 - AluSx SINE Alu -2 310 1 183 100 0 0 chr1 7094189 7094219 -235570134 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 2093 109 0 7 chr1 7094219 7094502 -235569851 - AluSg1 SINE Alu -28 281 1 1262 98 5 16 chr1 7095524 7095708 -235568645 + L1PA8 LINE L1 5991 6172 0 1202 148 0 68 chr1 7096062 7096299 -235568054 - AluJo SINE Alu 0 312 92 1419 188 90 4 chr1 7096411 7096688 -235567665 - AluJo SINE Alu -11 301 1 2211 118 10 0 chr1 7096971 7097268 -235567085 + AluSx SINE Alu 3 302 -10 351 244 44 67 chr1 7097788 7097844 -235566509 - MIR SINE MIR -48 214 158 2193 82 65 0 chr1 7097844 7098136 -235566217 - AluY SINE Alu 0 311 1 351 244 44 67 chr1 7098136 7098214 -235566139 - MIR SINE MIR -104 158 83 202 283 75 0 chr1 7098889 7098942 -235565411 - L3 LINE CR1 -21 1556 1500 238 189 257 27 chr1 7099296 7099370 -235564983 - MIR3 SINE MIR -25 183 93 1597 168 0 82 chr1 7099477 7099662 -235564691 - AluJb SINE Alu -11 301 153 1545 173 20 47 chr1 7099662 7099963 -235564390 - AluJb SINE Alu -19 293 1 1597 168 0 82 chr1 7099963 7100105 -235564248 - AluJb SINE Alu -159 153 1 1092 146 5 66 chr1 7100938 7101119 -235563234 - AluJb SINE Alu 0 312 140 2310 89 23 0 chr1 7101119 7101422 -235562931 - AluSp SINE Alu -3 310 1 1092 146 5 66 chr1 7101422 7101471 -235562882 - AluJb SINE Alu -172 140 90 3690 235 111 64 chr1 7101600 7102207 -235562146 - L1ME1 LINE L1 -6 6160 5583 2063 90 62 7 chr1 7102207 7102497 -235561856 - AluSc SINE Alu 0 309 4 3690 235 111 64 chr1 7102497 7102511 -235561842 - L1ME1 LINE L1 -583 5583 5571 2408 70 0 13 chr1 7102511 7102812 -235561541 - AluY SINE Alu -14 297 1 3690 235 111 64 chr1 7102812 7103199 -235561154 - L1ME1 LINE L1 -595 5571 5203 1595 154 41 69 chr1 7103199 7103518 -235560835 - AluJo SINE Alu -2 310 1 3690 235 111 64 chr1 7103518 7104038 -235560315 - L1ME1 LINE L1 -963 5203 4708 2353 110 0 0 chr1 7104038 7104347 -235560006 + AluSq SINE Alu 4 312 -1 3690 235 111 64 chr1 7104347 7104479 -235559874 - L1ME1 LINE L1 -1458 4708 4584 712 169 7 70 chr1 7104479 7104621 -235559732 - FLAM_A SINE Alu 0 133 1 3690 235 111 64 chr1 7104621 7104986 -235559367 - L1ME1 LINE L1 -1582 4584 4237 1701 174 37 0 chr1 7104986 7105280 -235559073 - AluJb SINE Alu -7 305 1 3690 235 111 64 chr1 7105280 7105795 -235558558 - L1ME1 LINE L1 -1929 4237 3492 207 100 0 0 chr1 7105795 7105825 -235558528 + (T)n Simple_repeat Simple_repeat 1 30 0 1957 244 136 30 chr1 7105860 7106483 -235557870 - L1ME1 LINE L1 -2885 3261 2705 2413 80 0 3 chr1 7106483 7106784 -235557569 + AluSc SINE Alu 1 300 -9 1957 244 136 30 chr1 7106784 7107171 -235557182 - L1ME1 LINE L1 -3441 2705 2144 2157 114 3 0 chr1 7107211 7107501 -235556852 - AluSp SINE Alu -22 291 1 2127 112 10 0 chr1 7107858 7108152 -235556201 + AluSx SINE Alu 1 297 -15 24 32 0 0 chr1 7108153 7108184 -235556169 + AT_rich Low_complexity Low_complexity 1 31 0 240 313 15 0 chr1 7108907 7108974 -235555379 + L2 LINE L2 3205 3272 0 24 67 0 0 chr1 7109678 7109723 -235554630 + AT_rich Low_complexity Low_complexity 1 45 0 2362 88 7 10 chr1 7109873 7110181 -235554172 - AluY SINE Alu -4 307 1 859 162 0 13 chr1 7110399 7110553 -235553800 - L1MB8 LINE L1 -190 5988 5837 267 300 150 46 chr1 7110569 7110896 -235553457 - L3 LINE CR1 -422 1155 795 377 278 31 0 chr1 7110953 7111050 -235553303 - MIR SINE MIR -18 244 145 2253 96 3 0 chr1 7111167 7111460 -235552893 + AluSc SINE Alu 1 294 -15 2319 111 0 0 chr1 7111845 7112142 -235552211 + AluSx SINE Alu 1 297 -15 2315 111 0 0 chr1 7112145 7112452 -235551901 + AluSg SINE Alu 3 309 -1 1287 234 122 20 chr1 7112748 7113206 -235551147 - MLT1D LTR MaLR 0 505 1 54 40 0 0 chr1 7113217 7113292 -235551061 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr1 7113329 7113353 -235551000 + AT_rich Low_complexity Low_complexity 1 24 0 800 168 0 0 chr1 7113353 7113478 -235550875 - FLAM_C SINE Alu -18 125 1 271 288 158 17 chr1 7116276 7116453 -235547900 + MIR SINE MIR 52 253 -9 2327 108 0 16 chr1 7116869 7117185 -235547168 - AluSx SINE Alu -1 311 1 2333 100 0 0 chr1 7117190 7117489 -235546864 - AluSx SINE Alu -13 299 1 202 235 123 12 chr1 7119168 7119249 -235545104 + L2 LINE L2 3182 3271 -1 2200 118 0 0 chr1 7120469 7120757 -235543596 + AluSq SINE Alu 1 288 -25 1695 186 10 3 chr1 7120767 7121063 -235543290 + AluJo SINE Alu 1 298 -14 1003 174 60 5 chr1 7121068 7121269 -235543084 + AluJb SINE Alu 89 300 -12 293 164 75 15 chr1 7121280 7121347 -235543006 + L2 LINE L2 3201 3271 -1 2409 76 7 7 chr1 7121464 7121767 -235542586 + AluSc SINE Alu 1 303 -6 2168 86 38 3 chr1 7122028 7122318 -235542035 + AluSx SINE Alu 1 300 -12 2022 122 0 31 chr1 7122925 7123244 -235541109 - AluSg SINE Alu -1 309 1 744 278 5 5 chr1 7123450 7123641 -235540712 - MIR SINE MIR -59 203 13 1599 171 16 44 chr1 7123654 7123975 -235540378 - AluJb SINE Alu 0 312 1 32 43 0 0 chr1 7124369 7124415 -235539938 + AT_rich Low_complexity Low_complexity 1 46 0 2393 81 0 0 chr1 7124637 7124945 -235539408 + AluY SINE Alu 1 308 -3 203 231 154 51 chr1 7125030 7125147 -235539206 - L2 LINE L2 -5 3308 3180 296 235 59 0 chr1 7125398 7125466 -235538887 + L2 LINE L2 3190 3261 -52 500 232 120 21 chr1 7126063 7126205 -235538148 + MIR SINE MIR 44 199 -63 578 218 0 63 chr1 7127033 7127175 -235537178 - FLAM_A SINE Alu 0 133 1 399 288 297 10 chr1 7127635 7128294 -235536059 - L2 LINE L2 -1 3312 2459 676 160 25 8 chr1 7129671 7129820 -235534533 - FLAM_A SINE Alu 0 151 1 1185 162 0 40 chr1 7130513 7130741 -235533612 + AluJo SINE Alu 87 305 -7 237 108 0 0 chr1 7130784 7130821 -235533532 + (TCC)n Simple_repeat Simple_repeat 3 39 0 180 111 0 0 chr1 7133976 7134003 -235530350 + (TG)n Simple_repeat Simple_repeat 1 27 0 1892 144 7 0 chr1 7134680 7134979 -235529374 + AluSx SINE Alu 1 301 -11 1023 256 133 36 chr1 7135493 7135938 -235528415 - L2 LINE L2 0 3313 2826 226 358 51 7 chr1 7136760 7136897 -235527456 + L2 LINE L2 3170 3312 -1 514 101 0 0 chr1 7137270 7137349 -235527004 + AluJ/FRAM SINE Alu 232 310 -2 239 232 72 120 chr1 7137611 7137736 -235526617 + MIR3 SINE MIR 9 127 -81 2067 111 0 3 chr1 7137744 7138055 -235526298 - AluSg SINE Alu 0 310 2 2080 119 0 10 chr1 7138763 7139057 -235525296 - AluSx SINE Alu -21 291 1 195 341 24 0 chr1 7140382 7140467 -235523886 - L2 LINE L2 -205 3067 2981 383 226 57 28 chr1 7140753 7140859 -235523494 + MER5B DNA MER1_type 12 120 -58 200 260 244 65 chr1 7140951 7141074 -235523279 - MER5B DNA MER1_type -21 157 13 2188 106 0 3 chr1 7141131 7141433 -235522920 - AluSx SINE Alu -11 301 1 384 274 160 23 chr1 7142424 7142599 -235521754 - L2 LINE L2 -2 3311 3113 980 97 0 0 chr1 7143706 7143888 -235520465 - AluSg SINE Alu 0 327 146 212 216 0 0 chr1 7143907 7143944 -235520409 + L2 LINE L2 3230 3266 -6 1181 81 0 0 chr1 7143956 7144105 -235520248 - AluSg SINE Alu -161 149 1 186 270 0 0 chr1 7144387 7144424 -235519929 - L2 LINE L2 -6 3266 3230 6663 121 6 119 chr1 7144931 7145603 -235518750 + L1P LINE L1 826 1258 -4888 2187 63 20 20 chr1 7145603 7145906 -235518447 + AluY SINE Alu 1 303 -8 6663 121 6 119 chr1 7145906 7146634 -235517719 + L1P LINE L1 1258 2067 -4079 2026 58 4 8 chr1 7146631 7146889 -235517464 + L1PA7 LINE L1 5878 6134 -20 * 519 172 172 22 chr1 7147466 7147646 -235516707 - Charlie2 DNA MER1_type -31 2831 2625 2081 177 33 3 chr1 7147663 7148024 -235516329 - MSTA LTR MaLR -54 374 3 9117 168 33 12 chr1 7148026 7149102 -235515251 - MSTA-int LTR MaLR 0 1651 528 2037 107 33 3 chr1 7149102 7149401 -235514952 - AluSg SINE Alu -2 308 1 9117 168 33 12 chr1 7149401 7149941 -235514412 - MSTA-int LTR MaLR -1123 528 1 1326 159 14 0 chr1 7149944 7150151 -235514202 - MSTA LTR MaLR -3 425 216 619 237 93 34 chr1 7150151 7150176 -235514177 - Charlie2 DNA MER1_type -232 2630 2608 1894 133 10 17 chr1 7150176 7150478 -235513875 - AluSx SINE Alu -11 301 2 619 237 93 34 chr1 7150478 7150773 -235513580 - Charlie2 DNA MER1_type -254 2608 2291 890 261 53 0 chr1 7150820 7151084 -235513269 - Charlie2 DNA MER1_type -728 2134 1857 329 268 105 67 chr1 7151087 7151296 -235513057 - Charlie2 DNA MER1_type -2457 325 109 245 204 56 0 chr1 7151604 7151658 -235512695 + Charlie4a DNA MER1_type 276 332 -176 1998 107 7 39 chr1 7151667 7151977 -235512376 - AluSx SINE Alu -12 300 1 2096 92 14 3 chr1 7151977 7152269 -235512084 - AluSc SINE Alu -14 295 1 385 136 61 0 chr1 7152276 7152342 -235512011 + Charlie4a DNA MER1_type 434 503 -5 2203 96 0 3 chr1 7152490 7152792 -235511561 - AluSq SINE Alu -12 301 1 490 137 0 0 chr1 7154075 7154148 -235510205 + L1MC1 LINE L1 6254 6326 -7 1407 182 22 35 chr1 7154293 7154606 -235509747 + AluJo SINE Alu 1 309 -3 1416 169 63 3 chr1 7155651 7155953 -235508400 + MER33 DNA MER1_type 1 320 -4 2103 104 0 0 chr1 7156238 7156544 -235507809 - AluSg SINE Alu 0 306 1 497 273 100 45 chr1 7157200 7157420 -235506933 - L2 LINE L2 0 3313 3082 1022 269 110 63 chr1 7157506 7158107 -235506246 - MLT1G LTR MaLR 0 590 1 243 218 13 39 chr1 7158174 7158252 -235506101 + MIR3 SINE MIR 127 202 -6 2794 10 0 0 chr1 7158723 7159035 -235505318 + AluYb8 SINE Alu 1 312 -6 255 61 0 0 chr1 7159570 7159603 -235504750 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 585 124 39 8 chr1 7160818 7160947 -235503406 + Tigger3(Golem) DNA MER2_type 2499 2631 -398 3639 133 15 0 chr1 7160947 7161466 -235502887 - MER1A DNA MER1_type 0 527 1 255 338 93 13 chr1 7161678 7161829 -235502524 + MIR SINE MIR 24 186 -76 577 250 16 0 chr1 7163366 7163490 -235500863 + MIR SINE MIR 120 245 -17 200 59 29 0 chr1 7163765 7163799 -235500554 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 207 0 0 0 chr1 7164925 7164948 -235499405 + (T)n Simple_repeat Simple_repeat 1 23 0 360 273 258 11 chr1 7165048 7165315 -235499038 - L2 LINE L2 -962 2352 2020 215 278 0 0 chr1 7165371 7165425 -235498928 + L2 LINE L2 2560 2613 -701 859 152 0 0 chr1 7165432 7165557 -235498796 + FLAM_C SINE Alu 3 127 -6 2361 57 14 0 chr1 7166117 7166413 -235497940 - AluY SINE Alu -11 300 1 633 237 184 4 chr1 7166544 7166748 -235497605 + MIR SINE MIR 23 256 -6 191 130 0 22 chr1 7168668 7168714 -235495639 + (CGGGGG)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr1 7168763 7168785 -235495568 + GC_rich Low_complexity Low_complexity 1 22 0 48 18 0 0 chr1 7168819 7168874 -235495479 + GC_rich Low_complexity Low_complexity 1 55 0 204 40 0 0 chr1 7172264 7172289 -235492064 + (TC)n Simple_repeat Simple_repeat 2 26 0 631 161 98 18 chr1 7172289 7172401 -235491952 - FLAM_A SINE Alu -12 121 1 572 256 46 17 chr1 7172745 7172931 -235491422 + MIR SINE MIR 33 226 -36 181 158 53 26 chr1 7173244 7173282 -235491071 + L2 LINE L2 358 396 -2918 224 346 49 47 chr1 7174581 7174909 -235489444 - L2 LINE L2 -223 3049 2722 26 0 0 0 chr1 7175147 7175173 -235489180 + AT_rich Low_complexity Low_complexity 1 26 0 299 301 240 0 chr1 7175626 7175772 -235488581 + MER5A DNA MER1_type 9 189 0 2578 61 0 3 chr1 7175973 7176283 -235488070 - AluY SINE Alu -2 309 1 2168 89 0 40 chr1 7178019 7178322 -235486031 - AluSc SINE Alu -18 291 1 2196 125 3 0 chr1 7178509 7178813 -235485540 - AluSp SINE Alu -8 305 1 2022 144 23 3 chr1 7178943 7179248 -235485105 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr1 7179248 7179270 -235485083 + AT_rich Low_complexity Low_complexity 1 22 0 870 276 44 8 chr1 7180862 7181112 -235483241 - MLT1H1 LTR MaLR -39 516 258 470 155 136 19 chr1 7181172 7181275 -235483078 + FLAM_A SINE Alu 22 136 -6 268 320 33 26 chr1 7182034 7182187 -235482166 - L3 LINE CR1 -163 1414 1261 234 0 0 0 chr1 7182591 7182617 -235481736 + (A)n Simple_repeat Simple_repeat 1 26 0 195 343 38 9 chr1 7184861 7184966 -235479387 - MIR SINE MIR -51 211 104 871 205 20 37 chr1 7185943 7186158 -235478195 - L1MD3 LINE L1 0 8040 7844 1336 142 127 40 chr1 7186233 7186486 -235477867 + AluJb SINE Alu 17 291 -21 369 261 126 85 chr1 7186617 7186655 -235477698 - L1ME4a LINE L1 -57 6064 6029 2302 95 7 0 chr1 7186655 7186949 -235477404 + AluSc SINE Alu 1 296 -13 369 261 126 85 chr1 7186949 7187473 -235476880 - L1ME4a LINE L1 -92 6029 5479 660 128 29 20 chr1 7188043 7188145 -235476208 + AluJo/FLAM SINE Alu 14 116 -196 2239 88 40 3 chr1 7188145 7188442 -235475911 - AluY SINE Alu -3 308 1 2323 96 0 3 chr1 7188461 7188764 -235475589 + AluSc SINE Alu 1 302 -7 404 254 108 88 chr1 7188766 7188924 -235475429 + L1ME LINE L1 3059 3212 -2934 1639 120 0 0 chr1 7188924 7189140 -235475213 + AluSq SINE Alu 1 216 -97 404 254 108 88 chr1 7189140 7189393 -235474960 + L1ME LINE L1 3212 3459 -2687 2361 91 0 0 chr1 7189393 7189691 -235474662 + AluSg SINE Alu 1 298 -12 404 254 108 88 chr1 7189691 7190035 -235474318 + L1ME LINE L1 3459 3830 -2316 1060 209 225 57 chr1 7190057 7190423 -235473930 - MLT1G LTR MaLR 0 590 131 2238 81 7 18 chr1 7190423 7190731 -235473622 + AluSc SINE Alu 1 305 0 1060 209 225 57 chr1 7190731 7190817 -235473536 - MLT1G LTR MaLR -459 131 61 1836 167 14 0 chr1 7190817 7191110 -235473243 - AluJb SINE Alu -13 299 3 213 39 0 0 chr1 7191122 7191148 -235473205 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 621 155 0 0 chr1 7191150 7191253 -235473100 - AluSg/x SINE Alu -32 278 176 477 206 72 0 chr1 7191257 7191354 -235472999 - MLT1G LTR MaLR -490 105 2 306 0 0 0 chr1 7191517 7191551 -235472802 + (TA)n Simple_repeat Simple_repeat 2 35 0 1855 138 0 46 chr1 7191553 7191857 -235472496 - AluJb SINE Alu -11 301 12 267 293 24 0 chr1 7191873 7191955 -235472398 + L1ME LINE L1 4029 4112 -2034 1711 184 7 0 chr1 7192038 7192316 -235472037 + AluJo SINE Alu 1 280 -32 297 0 0 0 chr1 7192334 7192367 -235471986 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 280 157 39 chr1 7192377 7192563 -235471790 + L1ME LINE L1 4176 4339 -1827 682 227 0 0 chr1 7192563 7192691 -235471662 + FLAM_A SINE Alu 1 128 -5 483 280 157 39 chr1 7192691 7193717 -235470636 + L1ME LINE L1 4339 5541 -625 264 229 202 9 chr1 7194592 7194701 -235469652 + L2 LINE L2 3142 3271 -1 345 348 21 0 chr1 7195109 7195250 -235469103 + MIR SINE MIR 49 192 -70 591 294 72 17 chr1 7195251 7195486 -235468867 - MIR SINE MIR -9 253 6 802 148 32 19 chr1 7195771 7195926 -235468427 + L1MB5 LINE L1 6010 6166 -8 2344 100 0 3 chr1 7197095 7197395 -235466958 - AluSg SINE Alu -11 299 1 490 226 90 0 chr1 7198036 7198169 -235466184 + MIR SINE MIR 49 193 -69 252 100 0 0 chr1 7200144 7200184 -235464169 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 427 345 112 24 chr1 7200433 7200541 -235463812 - L2 LINE L2 0 3313 3216 1935 143 34 3 chr1 7200541 7200835 -235463518 - AluSx SINE Alu -9 303 1 427 345 112 24 chr1 7200835 7201192 -235463161 - L2 LINE L2 -97 3216 2807 406 269 0 21 chr1 7201229 7201405 -235462948 - MIR SINE MIR -19 243 7 285 319 70 75 chr1 7201408 7201863 -235462490 - L2 LINE L2 -540 2774 2322 24 53 0 0 chr1 7201909 7201947 -235462406 + AT_rich Low_complexity Low_complexity 1 38 0 2790 20 0 0 chr1 7203970 7204271 -235460082 + AluYb8 SINE Alu 1 301 -17 272 182 2 0 chr1 7204394 7204451 -235459902 - L1ME3 LINE L1 -196 5968 5911 1094 266 109 30 chr1 7204517 7205656 -235458697 - L1ME3 LINE L1 -356 5806 4577 490 237 51 0 chr1 7205874 7206030 -235458323 - L1M LINE L1 -737 5427 5264 24 0 0 0 chr1 7206320 7206344 -235458009 + AT_rich Low_complexity Low_complexity 1 24 0 231 36 0 0 chr1 7206537 7206565 -235457788 + (A)n Simple_repeat Simple_repeat 1 28 0 270 0 0 0 chr1 7206565 7206595 -235457758 + (TA)n Simple_repeat Simple_repeat 2 31 0 2046 72 0 27 chr1 7206595 7206858 -235457495 - AluY SINE Alu -5 306 51 216 67 0 0 chr1 7206865 7206895 -235457458 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2282 103 0 0 chr1 7208690 7209010 -235455343 - AluSg SINE Alu 0 320 1 341 230 0 0 chr1 7209815 7209889 -235454464 - MIR SINE MIR -113 149 76 671 173 168 39 chr1 7209891 7210070 -235454283 + MER105 DNA DNA 1 202 -2 215 316 43 51 chr1 7211219 7211336 -235453017 - L2 LINE L2 -16 3256 3141 2097 134 0 29 chr1 7211942 7212248 -235452105 + AluSg SINE Alu 1 297 -13 2237 141 32 3 chr1 7213819 7214195 -235450158 - MLT1B LTR MaLR 0 390 4 42 20 0 0 chr1 7215493 7215542 -235448811 + AT_rich Low_complexity Low_complexity 1 49 0 291 294 20 0 chr1 7216525 7216627 -235447726 + MIR SINE MIR 86 189 -73 25 65 0 0 chr1 7218208 7218254 -235446099 + AT_rich Low_complexity Low_complexity 1 46 0 324 0 0 0 chr1 7220045 7220081 -235444272 + (CA)n Simple_repeat Simple_repeat 2 37 0 1074 249 123 63 chr1 7222105 7222500 -235441853 - L1ME1 LINE L1 -25 6141 5668 2418 48 3 7 chr1 7222500 7222789 -235441564 + AluY SINE Alu 1 288 -23 1074 249 123 63 chr1 7222789 7222956 -235441397 - L1ME1 LINE L1 -498 5668 5513 270 81 0 0 chr1 7223039 7223076 -235441277 + (T)n Simple_repeat Simple_repeat 1 37 0 353 65 0 0 chr1 7223076 7223122 -235441231 - U5 snRNA snRNA -65 51 6 1331 209 16 35 chr1 7223354 7223670 -235440683 - AluJo SINE Alu 0 312 3 849 125 0 52 chr1 7223674 7223810 -235440543 - FLAM_C SINE Alu -3 130 2 2393 74 0 16 chr1 7224090 7224402 -235439951 - AluY SINE Alu -4 307 1 267 54 0 0 chr1 7225648 7225685 -235438668 + (T)n Simple_repeat Simple_repeat 1 37 0 333 264 0 112 chr1 7226245 7226370 -235437983 + L2 LINE L2 3191 3301 -12 1503 232 24 18 chr1 7230189 7230530 -235433823 + MER2 DNA MER2_type 1 343 -1 198 0 0 0 chr1 7232759 7232781 -235431572 + (GGAGAA)n Simple_repeat Simple_repeat 1 22 0 215 261 0 0 chr1 7234327 7234392 -235429961 + (CCA)n Simple_repeat Simple_repeat 1 65 0 505 295 116 62 chr1 7235347 7235812 -235428541 - L2 LINE L2 -2 3311 2822 203 61 30 0 chr1 7236558 7236591 -235427762 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 29 28 0 0 chr1 7237943 7237979 -235426374 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr1 7238154 7238184 -235426169 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr1 7241930 7241954 -235422399 + GC_rich Low_complexity Low_complexity 1 24 0 497 118 0 21 chr1 7242859 7242952 -235421401 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 286 314 124 13 chr1 7244767 7244920 -235419433 + MIR SINE MIR 33 202 -60 2442 73 0 0 chr1 7244987 7245290 -235419063 - AluY SINE Alu -8 303 1 258 287 130 13 chr1 7245745 7245925 -235418428 + MIR SINE MIR 18 216 -46 182 335 87 64 chr1 7247035 7247208 -235417145 + L2 LINE L2 2874 3050 -263 223 347 107 0 chr1 7247275 7247396 -235416957 + L2 LINE L2 3180 3313 0 534 235 0 0 chr1 7247404 7247574 -235416779 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 282 250 0 0 chr1 7247611 7247699 -235416654 + (TGGA)n Simple_repeat Simple_repeat 1 88 0 508 182 214 73 chr1 7247794 7247986 -235416367 - MER20 DNA MER1_type 0 219 1 1506 126 4 17 chr1 7249343 7249573 -235414780 - AluJo SINE Alu 0 312 86 977 281 43 7 chr1 7249637 7249999 -235414354 + L1MB7 LINE L1 5796 6176 -2 2432 45 0 0 chr1 7250058 7250346 -235414007 - AluY SINE Alu -23 288 1 1843 126 11 0 chr1 7250368 7250631 -235413722 - AluSx SINE Alu -46 266 1 348 125 0 0 chr1 7250642 7250698 -235413655 + MER96B DNA MER1_type? 190 245 -172 2381 65 0 28 chr1 7250698 7251019 -235413334 - AluSx SINE Alu 0 312 1 2142 88 3 29 chr1 7251053 7251359 -235412994 - AluY SINE Alu -11 300 3 519 137 0 17 chr1 7251781 7251809 -235412544 - MER96B DNA MER1_type? -235 182 155 2349 84 0 7 chr1 7251809 7252119 -235412234 + AluSc SINE Alu 1 308 -1 519 137 0 17 chr1 7252119 7252207 -235412146 - MER96B DNA MER1_type? -262 155 68 297 164 33 0 chr1 7252410 7252471 -235411882 + MER45 DNA AcHobo 44 106 -72 233 175 0 0 chr1 7252465 7252505 -235411848 + MER45 DNA AcHobo 1542 1581 0 * 695 253 128 0 chr1 7253425 7253715 -235410638 + MER58B DNA MER1_type 6 341 0 2392 65 0 0 chr1 7254553 7254843 -235409510 + AluY SINE Alu 1 290 -21 2858 80 0 3 chr1 7254874 7255237 -235409116 + THE1B LTR MaLR 1 362 -2 577 316 54 24 chr1 7255490 7255825 -235408528 - L1ME4a LINE L1 -255 5866 5522 2280 100 0 0 chr1 7255842 7256142 -235408211 - AluSg SINE Alu -10 300 1 1597 130 8 8 chr1 7257534 7257807 -235406546 - AluJb SINE Alu 0 319 47 1926 151 3 0 chr1 7258537 7258835 -235405518 + AluJb SINE Alu 1 299 -13 880 117 0 0 chr1 7258835 7258955 -235405398 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7258973 7259048 -235405305 + A-rich Low_complexity Low_complexity 1 75 0 2382 77 3 0 chr1 7259461 7259760 -235404593 + AluSx SINE Alu 1 300 -12 2441 54 0 0 chr1 7260180 7260477 -235403876 + AluY SINE Alu 1 297 -14 1008 194 0 0 chr1 7260614 7260789 -235403564 - AluJ SINE Alu -13 299 125 146 72 0 0 chr1 7260789 7261114 -235403239 + AT_rich Low_complexity Low_complexity 1 47 0 842 143 0 0 chr1 7261121 7261240 -235403113 - AluJ SINE Alu -193 119 1 2327 97 0 0 chr1 7263467 7263777 -235400576 - AluSq SINE Alu -3 310 1 811 108 0 0 chr1 7264156 7264267 -235400086 - HY1 scRNA scRNA -1 111 1 2084 110 3 3 chr1 7264273 7264585 -235399768 - AluSx SINE Alu 0 312 1 705 223 22 0 chr1 7264668 7264807 -235399546 - FLAM_C SINE Alu -1 142 1 2677 246 44 28 chr1 7265109 7265330 -235399023 - MER82 DNA MER2_type 0 653 437 2219 87 0 3 chr1 7265330 7265637 -235398716 - AluSp SINE Alu 0 306 1 2677 246 44 28 chr1 7265637 7266055 -235398298 - MER82 DNA MER2_type -216 437 3 2343 80 0 0 chr1 7268822 7269123 -235395230 - AluSg SINE Alu -9 301 1 1461 85 0 0 chr1 7269895 7270153 -235394200 + (TCCA)n Simple_repeat Simple_repeat 1 258 0 546 96 0 0 chr1 7270254 7270327 -235394026 - AluJ/FLAM SINE Alu -239 73 1 802 188 0 0 chr1 7270711 7270844 -235393509 - FLAM_C SINE Alu 0 133 1 1022 137 12 6 chr1 7270894 7271055 -235393298 + U1 snRNA snRNA 4 165 0 1637 114 84 4 chr1 7271094 7271367 -235392986 + AluSg SINE Alu 1 295 -15 1823 129 3 30 chr1 7271714 7272016 -235392337 + AluSx SINE Alu 1 294 -18 2279 99 0 0 chr1 7272018 7272320 -235392033 + AluY SINE Alu 3 304 -7 242 297 44 33 chr1 7273041 7273132 -235391221 - MIR3 SINE MIR -3 205 114 2309 109 6 6 chr1 7273179 7273491 -235390862 + AluSx SINE Alu 1 312 0 940 208 50 46 chr1 7274369 7274609 -235389744 + MIR SINE MIR 19 259 -3 397 288 110 0 chr1 7274686 7274804 -235389549 - L3 LINE CR1 -133 1444 1314 1764 183 0 7 chr1 7276198 7276498 -235387855 + AluJb SINE Alu 1 298 -14 2341 103 3 3 chr1 7277548 7277858 -235386495 - AluSq SINE Alu -3 310 1 252 279 165 0 chr1 7277871 7277950 -235386403 + MIR SINE MIR 57 148 -114 2333 70 0 17 chr1 7278236 7278523 -235385830 + AluY SINE Alu 22 303 -8 269 222 0 0 chr1 7278700 7278745 -235385608 - L2 LINE L2 -24 3289 3245 208 75 25 25 chr1 7278753 7278793 -235385560 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2081 135 3 3 chr1 7278826 7279122 -235385231 - AluSx SINE Alu -16 296 1 543 202 90 106 chr1 7279122 7279310 -235385043 - MIR SINE MIR -16 246 62 292 299 19 9 chr1 7279643 7279750 -235384603 + L1MC4 LINE L1 7707 7814 -228 1510 156 89 7 chr1 7279750 7280032 -235384321 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7280035 7280078 -235384275 + AT_rich Low_complexity Low_complexity 1 43 0 293 256 93 0 chr1 7280108 7280194 -235384159 + L1MC4 LINE L1 7806 7899 -143 1090 167 6 0 chr1 7280252 7280426 -235383927 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7280436 7280508 -235383845 + CT-rich Low_complexity Low_complexity 1 75 -11 1796 166 10 7 chr1 7280508 7280809 -235383544 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7280809 7280822 -235383531 + CT-rich Low_complexity Low_complexity 74 86 0 302 229 0 16 chr1 7280828 7280889 -235383464 + L2 LINE L2 3254 3313 0 190 321 0 25 chr1 7280954 7281035 -235383318 + L2 LINE L2 2174 2252 -1062 2302 113 0 3 chr1 7281409 7281720 -235382633 - AluSg SINE Alu 0 310 1 231 36 0 0 chr1 7281720 7281748 -235382605 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2022 108 48 0 chr1 7281748 7282017 -235382336 - AluSx SINE Alu -30 282 1 991 101 8 0 chr1 7282020 7282149 -235382204 - AluSq/x SINE Alu -179 134 5 321 260 67 39 chr1 7283199 7283303 -235381050 - L3b LINE CR1 -190 1393 1287 2157 115 3 14 chr1 7283696 7284027 -235380326 - AluSx SINE Alu 0 312 3 21 0 0 0 chr1 7284034 7284055 -235380298 + AT_rich Low_complexity Low_complexity 1 21 0 2034 103 29 7 chr1 7284264 7284545 -235379808 - AluSx SINE Alu -14 298 12 2326 66 20 7 chr1 7284940 7285241 -235379112 - AluSq SINE Alu -8 305 1 2072 116 176 19 chr1 7285311 7285350 -235379003 - MSTA LTR MaLR 0 428 396 2197 126 10 0 chr1 7285350 7285659 -235378694 + AluSx SINE Alu 1 312 0 2072 116 176 19 chr1 7285659 7285989 -235378364 - MSTA LTR MaLR -32 396 1 225 0 0 0 chr1 7286281 7286306 -235378047 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 710 187 0 0 chr1 7286309 7286416 -235377937 - AluJb SINE Alu -31 281 175 1840 131 28 21 chr1 7286455 7286775 -235377578 + AluJb SINE Alu 1 312 0 2140 98 7 17 chr1 7286785 7287095 -235377258 - AluSx SINE Alu 0 308 2 203 316 63 0 chr1 7287843 7287922 -235376431 + L2 LINE L2 3189 3272 0 1799 81 27 0 chr1 7287979 7288201 -235376152 - AluSx SINE Alu -84 228 1 872 124 0 0 chr1 7288330 7288443 -235375910 + AluSx SINE Alu 62 174 -138 1817 97 4 4 chr1 7288444 7288681 -235375672 - AluSc SINE Alu -72 237 1 788 193 60 0 chr1 7288690 7288856 -235375497 - MLT1C LTR MaLR -291 176 1 210 336 138 52 chr1 7288857 7289089 -235375264 + L2 LINE L2 3002 3253 -19 234 0 0 0 chr1 7289093 7289119 -235375234 + (CA)n Simple_repeat Simple_repeat 2 27 0 805 188 0 0 chr1 7289119 7289247 -235375106 - FLAM_C SINE Alu -5 128 1 2125 129 7 10 chr1 7289292 7289601 -235374752 + AluSx SINE Alu 3 310 -2 2179 112 7 0 chr1 7289805 7290091 -235374262 + AluSx SINE Alu 1 288 -24 297 0 0 0 chr1 7290103 7290136 -235374217 + (TG)n Simple_repeat Simple_repeat 2 34 0 418 370 24 6 chr1 7290269 7290434 -235373919 - MIR3 SINE MIR -9 199 32 270 246 0 0 chr1 7290543 7290608 -235373745 + MIR SINE MIR 34 98 -164 2323 104 0 0 chr1 7290696 7290995 -235373358 + AluSx SINE Alu 1 299 -13 297 75 0 0 chr1 7291122 7291162 -235373191 + (TG)n Simple_repeat Simple_repeat 2 41 0 1002 126 119 0 chr1 7291442 7291593 -235372760 + AluJb SINE Alu 137 305 -7 248 109 0 22 chr1 7291596 7291642 -235372711 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2075 130 27 10 chr1 7291699 7292000 -235372353 - AluSq SINE Alu -7 306 1 2480 71 3 7 chr1 7292107 7292416 -235371937 - AluY SINE Alu 0 311 4 2351 83 3 7 chr1 7292452 7292754 -235371599 + AluY SINE Alu 1 301 -10 1618 184 3 44 chr1 7292770 7293065 -235371288 + AluJo SINE Alu 10 293 -19 444 37 0 0 chr1 7293065 7293119 -235371234 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 1618 184 3 44 chr1 7293119 7293139 -235371214 + AluJo SINE Alu 293 312 0 349 245 47 19 chr1 7293186 7293292 -235371061 - L2 LINE L2 0 3313 3205 609 67 0 0 chr1 7293472 7293547 -235370806 + AluS SINE Alu 2 76 -237 2418 74 0 3 chr1 7293547 7293831 -235370522 + AluSq SINE Alu 15 297 -16 266 75 0 0 chr1 7293886 7293926 -235370427 + HY1 scRNA scRNA 72 111 -1 699 196 0 8 chr1 7294234 7294367 -235369986 + FLAM_C SINE Alu 2 133 -10 223 169 0 34 chr1 7294367 7294426 -235369927 + GA-rich Low_complexity Low_complexity 4 60 0 1994 127 7 13 chr1 7295612 7295919 -235368434 - AluJb SINE Alu -7 305 1 2552 58 0 0 chr1 7296076 7296371 -235367982 + AluY SINE Alu 1 295 -16 188 289 26 26 chr1 7296415 7296491 -235367862 + L2 LINE L2 2422 2497 -817 610 315 88 28 chr1 7296491 7297060 -235367293 + L2 LINE L2 2221 2823 -491 538 280 70 23 chr1 7297094 7297308 -235367045 + L2 LINE L2 3090 3313 0 2160 103 34 0 chr1 7297379 7297670 -235366683 + AluSg SINE Alu 1 301 -9 335 327 94 65 chr1 7297805 7298239 -235366114 + L2 LINE L2 2812 3258 -14 829 217 0 6 chr1 7298468 7298629 -235365724 + FRAM SINE Alu 1 160 -6 2146 91 30 27 chr1 7298682 7299095 -235365258 + AluSp SINE Alu 1 414 0 284 250 115 77 chr1 7299095 7299168 -235365185 + L1 LINE L1 4600 4669 -1477 2489 49 0 0 chr1 7299168 7299456 -235364897 + AluY SINE Alu 1 288 -23 180 0 0 0 chr1 7299456 7299476 -235364877 + (TA)n Simple_repeat Simple_repeat 2 21 0 284 250 115 77 chr1 7299476 7299557 -235364796 + L1 LINE L1 4668 4761 -1385 2427 89 0 16 chr1 7299557 7299873 -235364480 + AluSq SINE Alu 1 311 -2 411 217 3 44 chr1 7299922 7300072 -235364281 + L1ME4a LINE L1 5201 5339 -807 1829 113 19 12 chr1 7300073 7300329 -235364024 + AluSp SINE Alu 39 296 -17 2361 139 86 8 chr1 7300334 7300729 -235363624 + MSTB LTR MaLR 1 426 0 435 219 34 25 chr1 7300743 7300862 -235363491 - MIR SINE MIR -28 234 115 772 237 21 5 chr1 7300867 7301061 -235363292 + MER58A DNA MER1_type 1 197 -27 453 184 13 133 chr1 7301064 7301135 -235363218 - MER45A DNA AcHobo -1407 174 131 2028 116 56 0 chr1 7301135 7301419 -235362934 + AluSx SINE Alu 1 300 -12 453 184 13 133 chr1 7301419 7301505 -235362848 - MER45A DNA AcHobo -1450 131 36 221 330 42 4 chr1 7301578 7301676 -235362677 - MIR SINE MIR -94 114 13 282 349 8 0 chr1 7301694 7301820 -235362533 + L1ME4a LINE L1 5486 5612 -509 353 258 118 45 chr1 7301829 7302050 -235362303 + L1ME4a LINE L1 5827 6063 -58 1749 159 25 11 chr1 7302266 7302549 -235361804 + AluJb SINE Alu 10 296 -16 368 264 203 11 chr1 7302627 7302809 -235361544 + MER115 DNA AcHobo 23 239 -454 3227 125 97 22 chr1 7302991 7303568 -235360785 - LTR29 LTR ERV1 0 622 3 243 213 85 43 chr1 7303585 7303679 -235360674 + Zaphod DNA AcHobo 3915 4012 -19 2244 109 3 34 chr1 7303813 7304134 -235360219 - AluSx SINE Alu -1 311 1 1602 157 4 15 chr1 7304134 7304395 -235359958 - AluJo SINE Alu -16 296 39 2286 110 3 19 chr1 7304569 7304886 -235359467 + AluSx SINE Alu 1 312 0 1739 175 23 16 chr1 7304973 7305276 -235359077 - AluJb SINE Alu -7 305 1 2178 119 3 3 chr1 7305685 7305987 -235358366 - AluSx SINE Alu -10 302 1 2116 108 0 63 chr1 7306193 7306526 -235357827 + AluSx SINE Alu 1 312 0 2132 177 16 26 chr1 7306730 7307081 -235357272 - L1MB7 LINE L1 -9 6175 5827 2287 114 3 0 chr1 7307081 7307389 -235356964 - AluSx SINE Alu -3 309 1 2132 177 16 26 chr1 7307389 7307467 -235356886 - L1MB7 LINE L1 -357 5827 5750 2256 103 17 7 chr1 7307527 7307829 -235356524 - AluSg SINE Alu -5 305 1 2130 99 23 26 chr1 7307830 7308132 -235356221 - AluSx SINE Alu -11 301 1 2250 121 7 0 chr1 7308284 7308589 -235355764 - AluSp SINE Alu -6 307 1 548 288 142 14 chr1 7308647 7308812 -235355541 - L1ME3 LINE L1 -218 5944 5801 1070 214 28 0 chr1 7308812 7309027 -235355326 - MER58A DNA MER1_type 0 224 4 548 288 142 14 chr1 7309027 7309406 -235354947 - L1ME3 LINE L1 -361 5801 5323 2024 121 0 17 chr1 7309406 7309695 -235354658 - AluSx SINE Alu -4 308 25 1646 54 0 0 chr1 7309695 7309879 -235354474 - AluY SINE Alu -126 185 1 420 149 0 64 chr1 7309905 7309999 -235354354 + AluJ/FRAM SINE Alu 218 305 -7 24 0 0 0 chr1 7309999 7310023 -235354330 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chr1 7310036 7310074 -235354279 + AT_rich Low_complexity Low_complexity 1 38 0 216 0 0 0 chr1 7310335 7310359 -235353994 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 311 256 33 0 chr1 7310387 7310477 -235353876 - L1ME LINE L1 -297 5824 5732 2229 112 0 7 chr1 7310522 7310827 -235353526 - AluSg SINE Alu -7 303 1 1071 68 8 0 chr1 7310834 7310966 -235353387 - AluSq/x SINE Alu -179 133 1 2604 65 3 0 chr1 7311662 7311971 -235352382 + AluY SINE Alu 1 310 -1 2651 64 0 0 chr1 7311974 7312285 -235352068 + AluY SINE Alu 1 311 0 2097 139 0 10 chr1 7312297 7312606 -235351747 + AluSx SINE Alu 1 306 -6 323 197 15 0 chr1 7312662 7312728 -235351625 - AluJ/FLAM SINE Alu -228 74 8 2071 106 7 0 chr1 7312777 7313060 -235351293 + AluY SINE Alu 18 302 -9 383 158 267 10 chr1 7313288 7313389 -235350964 + FLAM_C SINE Alu 5 131 -2 572 163 0 0 chr1 7313615 7313701 -235350652 + AluS SINE Alu 7 92 -221 1683 124 116 0 chr1 7313721 7313979 -235350374 + AluSx SINE Alu 21 308 -4 969 129 0 0 chr1 7315143 7315282 -235349071 + AluJb SINE Alu 1 139 -173 2135 112 0 7 chr1 7315496 7315782 -235348571 - AluSq SINE Alu -29 284 1 1802 155 3 14 chr1 7316033 7316330 -235348023 + AluJo SINE Alu 5 298 -14 1401 201 123 4 chr1 7316333 7316602 -235347751 + AluJo SINE Alu 1 301 -1 331 111 0 0 chr1 7316602 7316647 -235347706 + (GA)n Simple_repeat Simple_repeat 1 45 0 584 171 0 8 chr1 7316650 7316767 -235347586 + GA-rich Low_complexity Low_complexity 1 116 0 387 367 137 5 chr1 7316781 7317198 -235347155 + L2 LINE L2 2173 2644 -670 2284 100 0 0 chr1 7317206 7317522 -235346831 - AluSx SINE Alu 0 317 2 445 284 42 64 chr1 7317614 7317850 -235346503 + L2 LINE L2 3078 3308 -5 1886 124 11 11 chr1 7318356 7318630 -235345723 + AluSq SINE Alu 2 275 -38 778 125 191 0 chr1 7318631 7318767 -235345586 + AluSp SINE Alu 137 298 -15 2509 76 3 0 chr1 7318908 7319211 -235345142 + AluSp SINE Alu 2 305 -8 405 58 0 0 chr1 7319211 7319263 -235345090 + (TA)n Simple_repeat Simple_repeat 2 53 0 316 143 29 0 chr1 7319304 7319374 -235344979 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 293 86 0 0 chr1 7319376 7319434 -235344919 + LTR66 LTR ERVL 394 451 -159 2295 84 3 0 chr1 7319653 7319972 -235344381 + AluSp SINE Alu 1 320 0 868 121 35 7 chr1 7319993 7320134 -235344219 + L1MA5 LINE L1 6154 6298 -2 326 298 23 46 chr1 7320185 7320316 -235344037 + MIR SINE MIR 134 261 -1 254 146 0 18 chr1 7320656 7320711 -235343642 + (TCC)n Simple_repeat Simple_repeat 3 56 0 253 299 11 11 chr1 7321081 7321168 -235343185 - LTR67 LTR ERVL -3 554 468 343 228 40 101 chr1 7321242 7321354 -235342999 + L1MD2 LINE L1 6210 6312 -47 2267 111 3 0 chr1 7321354 7321660 -235342693 - AluSx SINE Alu -5 307 1 343 228 40 101 chr1 7321660 7321696 -235342657 + L1MD2 LINE L1 6312 6349 -10 2145 106 6 38 chr1 7322026 7322346 -235342007 + AluSg SINE Alu 1 310 0 2389 88 10 0 chr1 7322956 7323250 -235341103 - AluSp SINE Alu -16 297 1 2376 91 27 0 chr1 7323554 7323851 -235340502 - AluSq SINE Alu -3 310 6 816 85 24 30 chr1 7323857 7324021 -235340332 + (TTTC)n Simple_repeat Simple_repeat 1 163 0 468 0 0 0 chr1 7324019 7324071 -235340282 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 * 1979 113 0 18 chr1 7324071 7324423 -235339930 - AluSx SINE Alu 0 359 13 230 283 0 0 chr1 7324436 7324489 -235339864 + L2 LINE L2 2688 2740 -574 526 319 86 46 chr1 7324497 7324951 -235339402 + L2 LINE L2 2842 3313 0 2493 108 8 3 chr1 7325011 7325373 -235338980 - THE1B LTR MaLR 0 364 1 428 175 39 38 chr1 7326321 7326436 -235337917 + MER34 LTR ERV1 431 536 -6 235 40 0 140 chr1 7326444 7326494 -235337859 + MLT1D LTR MaLR 245 287 -218 2297 94 0 10 chr1 7326521 7326809 -235337544 - AluSq SINE Alu -28 285 1 857 77 0 31 chr1 7326906 7327036 -235337317 + MER30 DNA MER1_type 1 126 -104 2272 76 4 0 chr1 7327039 7327346 -235337007 - AluSx SINE Alu 0 312 5 410 198 47 38 chr1 7327369 7327475 -235336878 + L2 LINE L2 3166 3272 0 1994 123 45 3 chr1 7328106 7328398 -235335955 - AluSg SINE Alu -6 304 1 985 246 38 102 chr1 7328583 7328685 -235335668 - MER34 LTR ERV1 0 542 435 2205 135 0 3 chr1 7328685 7328989 -235335364 - AluSx SINE Alu -9 303 1 985 246 38 102 chr1 7328989 7329438 -235334915 - MER34 LTR ERV1 -107 435 27 2250 98 3 35 chr1 7329438 7329755 -235334598 - AluSx SINE Alu -5 307 1 985 246 38 102 chr1 7329755 7329779 -235334574 - MER34 LTR ERV1 -515 27 3 1762 100 10 46 chr1 7329806 7330213 -235334140 - MER1B DNA MER1_type 0 339 1 2293 108 3 25 chr1 7330555 7330870 -235333483 + AluSp SINE Alu 1 308 -5 2170 117 3 0 chr1 7330889 7331179 -235333174 + AluSx SINE Alu 5 295 -17 1575 155 68 0 chr1 7331551 7331850 -235332503 + AluJo SINE Alu 1 317 0 2307 128 0 0 chr1 7332171 7332476 -235331877 - AluJo SINE Alu -7 305 1 1957 127 37 10 chr1 7332820 7333155 -235331198 - AluSx SINE Alu 0 343 1 26 0 0 0 chr1 7333476 7333502 -235330851 + AT_rich Low_complexity Low_complexity 1 26 0 307 299 26 0 chr1 7333510 7333587 -235330766 - L1MC4 LINE L1 -1350 6692 6614 857 137 0 0 chr1 7333615 7333732 -235330621 - FLAM_C SINE Alu -26 117 1 210 91 0 0 chr1 7333760 7333793 -235330560 + (TG)n Simple_repeat Simple_repeat 2 34 0 1010 179 6 0 chr1 7333838 7334000 -235330353 + AluJb SINE Alu 136 298 -14 428 231 27 34 chr1 7334705 7334852 -235329501 + AluYa5 SINE Alu 164 309 -2 555 174 93 41 chr1 7334853 7335025 -235329328 - MER96B DNA MER1_type? -236 181 1 869 189 13 0 chr1 7335054 7335207 -235329146 - AluJb SINE Alu -21 291 137 24 96 0 0 chr1 7335635 7335708 -235328645 + GC_rich Low_complexity Low_complexity 1 73 0 826 124 0 0 chr1 7336221 7336334 -235328019 + AluJb SINE Alu 196 308 -4 2137 105 54 0 chr1 7336342 7336636 -235327717 + AluSg SINE Alu 1 310 0 737 254 21 25 chr1 7336772 7337008 -235327345 - L1MC4 LINE L1 0 8042 7808 204 68 0 102 chr1 7337101 7337160 -235327193 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 34 0 0 0 chr1 7337819 7337853 -235326500 + AT_rich Low_complexity Low_complexity 1 34 0 449 95 60 0 chr1 7337853 7337937 -235326416 - L1PB1 LINE L1 0 6151 6063 256 260 8 98 chr1 7338081 7338215 -235326138 - MER5A DNA MER1_type 0 189 54 307 222 40 95 chr1 7338408 7338534 -235325819 - L1ME LINE L1 -466 5655 5537 2316 92 0 0 chr1 7338627 7338939 -235325414 + AluSx SINE Alu 1 312 0 509 325 124 0 chr1 7339022 7339216 -235325137 + MIR SINE MIR 26 243 -19 405 300 19 25 chr1 7339572 7339732 -235324621 + MIR SINE MIR 34 192 -70 207 344 78 19 chr1 7339831 7339985 -235324368 + L2 LINE L2 2578 2740 -574 1101 73 0 7 chr1 7341367 7341504 -235322849 - AluSp/q SINE Alu -15 298 163 331 316 18 18 chr1 7341840 7341954 -235322399 + MIR SINE MIR 109 222 -40 2096 113 10 3 chr1 7341966 7342257 -235322096 - AluSg SINE Alu -17 293 1 1844 171 3 22 chr1 7342663 7342978 -235321375 + AluJb SINE Alu 1 309 -3 211 205 0 0 chr1 7343128 7343167 -235321186 + CT-rich Low_complexity Low_complexity 3 41 0 729 176 0 29 chr1 7343167 7343303 -235321050 - AluJb SINE Alu -179 133 2 532 238 6 70 chr1 7343385 7343486 -235320867 + MER45 DNA AcHobo 4 91 -862 2241 96 7 0 chr1 7343486 7343777 -235320576 - AluSx SINE Alu -19 293 1 532 238 6 70 chr1 7343777 7343847 -235320506 + MER45 DNA AcHobo 91 164 -789 450 248 255 0 chr1 7343968 7344121 -235320232 + MER45C DNA AcHobo 762 953 0 202 354 31 42 chr1 7344337 7344433 -235319920 + MIR3 SINE MIR 106 200 -8 1918 160 10 0 chr1 7344556 7344850 -235319503 + AluJo SINE Alu 1 297 -15 2518 93 0 0 chr1 7345130 7345443 -235318910 + AluSq SINE Alu 1 313 0 2142 130 0 3 chr1 7345579 7345871 -235318482 - AluSx SINE Alu -21 291 1 742 188 0 0 chr1 7346255 7346388 -235317965 - FLAM_C SINE Alu 0 133 1 935 137 12 6 chr1 7346438 7346599 -235317754 + U1 snRNA snRNA 4 165 0 1728 114 84 4 chr1 7346638 7346911 -235317442 + AluSg SINE Alu 1 295 -15 1913 129 3 30 chr1 7347258 7347560 -235316793 + AluSx SINE Alu 1 294 -18 2388 99 0 0 chr1 7347562 7347864 -235316489 + AluY SINE Alu 3 304 -7 225 319 44 33 chr1 7348585 7348676 -235315677 - MIR3 SINE MIR -3 205 114 2320 109 6 6 chr1 7348723 7349035 -235315318 + AluSx SINE Alu 1 312 0 884 208 50 46 chr1 7349913 7350153 -235314200 + MIR SINE MIR 19 259 -3 378 288 110 0 chr1 7350230 7350348 -235314005 - L3 LINE CR1 -133 1444 1314 1775 183 0 7 chr1 7351742 7352042 -235312311 + AluJb SINE Alu 1 298 -14 2353 103 3 3 chr1 7353092 7353402 -235310951 - AluSq SINE Alu -3 310 1 233 279 165 0 chr1 7353415 7353494 -235310859 + MIR SINE MIR 57 148 -114 2340 70 0 17 chr1 7353781 7354068 -235310285 + AluY SINE Alu 22 303 -8 255 245 0 0 chr1 7354241 7354290 -235310063 - L2 LINE L2 -20 3293 3245 208 75 25 25 chr1 7354298 7354338 -235310015 + (GGA)n Simple_repeat Simple_repeat 3 42 0 2089 135 3 3 chr1 7354371 7354667 -235309686 - AluSx SINE Alu -16 296 1 511 223 85 101 chr1 7354667 7354855 -235309498 - MIR SINE MIR -16 246 62 300 306 25 13 chr1 7355150 7355295 -235309058 + L1MC4 LINE L1 7573 7814 -95 1517 156 89 7 chr1 7355295 7355577 -235308776 - AluJb SINE Alu -7 305 1 43 0 0 0 chr1 7355580 7355623 -235308730 + AT_rich Low_complexity Low_complexity 1 43 0 302 256 93 0 chr1 7355653 7355739 -235308614 + L1MC4 LINE L1 7806 7899 -143 1096 167 6 0 chr1 7355797 7355971 -235308382 + AluJb SINE Alu 136 310 -2 315 256 12 12 chr1 7355981 7356053 -235308300 + CT-rich Low_complexity Low_complexity 1 75 -11 1806 166 10 7 chr1 7356053 7356354 -235307999 - AluJb SINE Alu -6 306 5 315 256 12 12 chr1 7356354 7356367 -235307986 + CT-rich Low_complexity Low_complexity 74 86 0 286 229 0 16 chr1 7356373 7356434 -235307919 + L2 LINE L2 3254 3313 0 181 321 0 25 chr1 7356499 7356580 -235307773 + L2 LINE L2 2174 2252 -1062 2304 113 0 3 chr1 7356936 7357265 -235307088 - AluSg SINE Alu 0 328 1 1966 129 50 4 chr1 7357283 7357563 -235306790 - AluSq SINE Alu -20 293 1 695 183 0 0 chr1 7358261 7358376 -235305977 + AluJo SINE Alu 1 115 -187 2759 72 3 8 chr1 7358376 7358748 -235305605 - THE1C LTR MaLR -4 371 1 1057 174 10 20 chr1 7358748 7358944 -235305409 + AluJo SINE Alu 106 299 -13 856 202 39 6 chr1 7359048 7359226 -235305127 - MIR SINE MIR -60 202 19 1242 185 14 14 chr1 7359556 7359778 -235304575 + AluJb SINE Alu 81 302 -10 1678 172 0 47 chr1 7360216 7360535 -235303818 + AluJb SINE Alu 1 304 -8 1550 121 3 121 chr1 7360694 7360874 -235303479 - AluSc SINE Alu -17 292 167 243 0 0 0 chr1 7360874 7360901 -235303452 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1550 121 3 121 chr1 7360901 7361051 -235303302 - AluSc SINE Alu -142 167 1 281 122 20 0 chr1 7361053 7361102 -235303251 - AluSq/x SINE Alu -170 132 83 318 333 140 0 chr1 7361277 7361427 -235302926 - MIR SINE MIR -18 244 74 2109 138 0 28 chr1 7361514 7361833 -235302520 + AluSx SINE Alu 3 312 0 511 238 72 86 chr1 7361841 7362250 -235302103 + L1M4 LINE L1 3896 4309 -1837 1930 157 10 16 chr1 7362250 7362563 -235301790 - AluJb SINE Alu -1 311 1 511 238 72 86 chr1 7362563 7362597 -235301756 + L1M4 LINE L1 4309 4342 -1804 2138 136 0 3 chr1 7362597 7362907 -235301446 + AluSx SINE Alu 1 309 -3 511 238 72 86 chr1 7362907 7363094 -235301259 + L1M4 LINE L1 4342 4610 -1536 496 95 0 0 chr1 7363132 7363206 -235301147 + AluSp/q SINE Alu 231 304 -9 284 188 24 35 chr1 7363208 7363293 -235301060 + L1M4 LINE L1 4638 4721 -1425 346 295 33 0 chr1 7363302 7363424 -235300929 - L1MC/D LINE L1 -2053 5755 5630 330 283 65 7 chr1 7363415 7363553 -235300800 - L1MC/D LINE L1 -2401 5407 5262 * 480 127 0 0 chr1 7363556 7363635 -235300718 - MER116 DNA Mariner -1 79 1 2111 135 3 13 chr1 7363667 7363978 -235300375 - AluSx SINE Alu -4 308 1 837 316 107 57 chr1 7363978 7364169 -235300184 - L1MC/D LINE L1 -981 5165 4985 2348 101 0 0 chr1 7364169 7364465 -235299888 + AluSc SINE Alu 3 298 -11 837 316 107 57 chr1 7364465 7364654 -235299699 - L1MC/D LINE L1 -1161 4985 4807 1901 164 3 7 chr1 7364654 7364958 -235299395 - AluJb SINE Alu -9 303 1 837 316 107 57 chr1 7364958 7365156 -235299197 - L1MC/D LINE L1 -1339 4807 4557 288 258 58 41 chr1 7365160 7365455 -235298898 - L1MC/D LINE L1 -2695 3451 3152 609 271 77 45 chr1 7365462 7365579 -235298774 - L1MC/D LINE L1 -3083 3063 2951 2416 113 0 0 chr1 7365579 7365888 -235298465 - AluSg SINE Alu -1 309 1 609 271 77 45 chr1 7365888 7366017 -235298336 - L1MC/D LINE L1 -3195 2951 2809 307 248 68 38 chr1 7366017 7366160 -235298193 - MIR SINE MIR -65 143 3 21 0 0 0 chr1 7366260 7366281 -235298072 + AT_rich Low_complexity Low_complexity 1 21 0 2431 94 0 0 chr1 7366742 7367040 -235297313 + AluSx SINE Alu 1 298 -14 214 266 55 37 chr1 7368805 7368914 -235295439 + L2 LINE L2 1301 1411 -1903 332 292 148 52 chr1 7369155 7369580 -235294773 + MLT1J LTR MaLR 1 466 -45 2894 137 20 29 chr1 7369626 7369711 -235294642 + L1MA8 LINE L1 5539 5623 -677 2192 91 51 46 chr1 7369711 7370084 -235294269 - THE1C LTR MaLR 0 375 1 2894 137 20 29 chr1 7370084 7370497 -235293856 + L1MA8 LINE L1 5623 6002 -298 622 206 8 8 chr1 7370497 7370628 -235293725 + FLAM_A SINE Alu 2 132 -1 2894 137 20 29 chr1 7370628 7370735 -235293618 + L1MA8 LINE L1 6002 6108 -192 1097 176 16 27 chr1 7370761 7370815 -235293538 - AluSx SINE Alu -126 186 133 2221 98 3 33 chr1 7370815 7371122 -235293231 - AluSg1 SINE Alu -11 298 1 1097 176 16 27 chr1 7371122 7371255 -235293098 - AluSx SINE Alu -179 133 1 1754 126 0 41 chr1 7371288 7371609 -235292744 + AluSx SINE Alu 1 309 0 428 100 0 0 chr1 7371609 7371669 -235292684 + Alu SINE Alu 231 290 -21 1362 134 0 5 chr1 7371686 7371896 -235292457 - AluSg/x SINE Alu 0 308 100 279 211 26 0 chr1 7371998 7372074 -235292279 + (CAAT)n Simple_repeat Simple_repeat 1 78 0 305 263 7 0 chr1 7372082 7372219 -235292134 + (TCCA)n Simple_repeat Simple_repeat 4 141 0 1011 152 0 0 chr1 7372244 7372422 -235291931 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 374 260 0 17 chr1 7372441 7372618 -235291735 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 210 318 0 0 chr1 7372619 7372682 -235291671 + (CCCA)n Simple_repeat Simple_repeat 4 66 0 378 0 0 0 chr1 7373571 7373613 -235290740 + (TG)n Simple_repeat Simple_repeat 2 43 0 273 118 0 0 chr1 7373613 7373664 -235290689 + (GA)n Simple_repeat Simple_repeat 2 52 0 1845 132 18 14 chr1 7373665 7373945 -235290408 - AluJb SINE Alu -31 281 1 2280 80 0 7 chr1 7374288 7374596 -235289757 + AluSx SINE Alu 1 306 0 2432 87 3 0 chr1 7375007 7375307 -235289046 - AluSx SINE Alu -11 301 1 22 35 0 0 chr1 7376041 7376070 -235288283 + GC_rich Low_complexity Low_complexity 1 29 0 253 51 0 0 chr1 7376427 7376466 -235287887 + ORSL DNA AcHobo 171 209 -66 283 264 173 9 chr1 7376581 7376691 -235287662 - L2 LINE L2 -34 3279 3152 745 85 94 0 chr1 7376722 7376828 -235287525 - FLAM_C SINE Alu -16 117 2 373 300 50 70 chr1 7376834 7377022 -235287331 - L2 LINE L2 -114 3199 3020 2146 110 14 3 chr1 7377022 7377314 -235287039 + AluSx SINE Alu 1 295 -17 373 300 50 70 chr1 7377314 7377468 -235286885 - L2 LINE L2 -293 3020 2864 241 256 141 16 chr1 7378459 7378580 -235285773 - MLT1J2 LTR MaLR -46 404 269 1719 167 30 17 chr1 7380502 7380801 -235283552 + AluJb SINE Alu 1 303 -9 219 304 0 0 chr1 7380913 7381038 -235283315 + (CA)n Simple_repeat Simple_repeat 1 125 0 464 172 21 0 chr1 7381697 7381790 -235282563 - MER53 DNA DNA -2 187 93 250 230 96 96 chr1 7382204 7382413 -235281940 - L1ME3A LINE L1 0 6170 5962 355 233 273 7 chr1 7382447 7382597 -235281756 - LTR16C LTR ERVL 0 491 302 1674 164 7 20 chr1 7382600 7382905 -235281448 - MLT1A1 LTR MaLR -64 301 1 239 267 133 0 chr1 7382913 7383003 -235281350 - LTR16C LTR ERVL -230 261 160 949 170 29 164 chr1 7383024 7383244 -235281109 - MLT1B LTR MaLR 0 390 201 280 143 0 0 chr1 7383265 7383314 -235281039 - Alu SINE Alu 0 300 252 1655 239 73 41 chr1 7383470 7383895 -235280458 - L1ME3A LINE L1 -239 5931 5476 2081 123 19 23 chr1 7383895 7384205 -235280148 - AluSq SINE Alu -4 309 1 1655 239 73 41 chr1 7384205 7384436 -235279917 - L1ME3A LINE L1 -694 5476 5254 180 0 0 0 chr1 7384450 7384470 -235279883 + (T)n Simple_repeat Simple_repeat 1 20 0 330 259 95 7 chr1 7384507 7384654 -235279699 + L1M4 LINE L1 5006 5165 -981 1986 153 0 7 chr1 7384661 7384955 -235279398 + AluJb SINE Alu 1 292 -20 273 263 61 18 chr1 7384974 7385088 -235279265 - L1ME3A LINE L1 -1568 4578 4460 1438 85 0 20 chr1 7385102 7385301 -235279052 + AluSg/x SINE Alu 115 309 -1 703 268 89 59 chr1 7385303 7385662 -235278691 - L1ME3A LINE L1 -2338 3808 3439 405 58 0 0 chr1 7385662 7385714 -235278639 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 1072 163 218 28 chr1 7385714 7385966 -235278387 - AluSg SINE Alu 0 300 1 1603 105 168 88 chr1 7386102 7386316 -235278037 + MLT1B LTR MaLR 5 201 -189 1998 151 131 13 chr1 7386316 7386699 -235277654 + MSTA LTR MaLR 1 428 0 1603 105 168 88 chr1 7386699 7386757 -235277596 + MLT1B LTR MaLR 201 253 -137 688 151 109 0 chr1 7386757 7386876 -235277477 + FLAM_C SINE Alu 1 132 -1 1603 105 168 88 chr1 7386876 7386954 -235277399 + MLT1B LTR MaLR 253 384 -6 568 206 39 116 chr1 7386994 7387063 -235277290 - L1M4 LINE L1 -2877 3269 3196 2334 125 0 0 chr1 7387063 7387374 -235276979 + AluSx SINE Alu 1 311 -1 568 206 39 116 chr1 7387374 7387558 -235276795 - L1M4 LINE L1 -2950 3196 2999 2144 144 0 3 chr1 7387558 7387871 -235276482 - AluJb SINE Alu 0 312 1 568 206 39 116 chr1 7387871 7387894 -235276459 - L1M4 LINE L1 -3147 2999 2976 2234 126 7 0 chr1 7387894 7388204 -235276149 - AluSx SINE Alu 0 312 1 568 206 39 116 chr1 7388204 7388312 -235276041 - L1M4 LINE L1 -3170 2976 2923 276 206 21 184 chr1 7388542 7388612 -235275741 + L2 LINE L2 2245 2325 -989 2243 114 3 0 chr1 7388612 7388930 -235275423 - AluSp SINE Alu 0 313 1 276 206 21 184 chr1 7388930 7388944 -235275409 + L2 LINE L2 2325 2340 -974 2110 130 3 3 chr1 7388944 7389243 -235275110 - AluSx SINE Alu -13 299 1 276 206 21 184 chr1 7389243 7389298 -235275055 + L2 LINE L2 2340 2362 -952 890 160 77 50 chr1 7389298 7389479 -235274874 + AluJo SINE Alu 1 186 -126 1896 148 7 10 chr1 7389585 7389890 -235274463 + AluSx SINE Alu 1 304 -8 1078 139 0 0 chr1 7389890 7390064 -235274289 + AluSg/x SINE Alu 134 307 0 342 0 0 0 chr1 7390408 7390446 -235273907 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 2124 98 0 4 chr1 7390450 7390726 -235273627 - AluSx SINE Alu -37 275 1 400 186 10 49 chr1 7390726 7390828 -235273525 - MER39 LTR ERV1 -609 98 1 357 338 1 23 chr1 7393776 7393909 -235270444 - MIR3 SINE MIR -51 157 42 2262 124 0 0 chr1 7394292 7394591 -235269762 + AluSq SINE Alu 1 299 -14 2395 95 0 0 chr1 7394932 7395227 -235269126 + AluSx SINE Alu 1 295 -17 297 0 0 0 chr1 7395227 7395260 -235269093 + (TA)n Simple_repeat Simple_repeat 1 33 0 2372 97 0 0 chr1 7395529 7395828 -235268525 - AluSq SINE Alu -9 304 6 36 23 0 0 chr1 7396001 7396044 -235268309 + AT_rich Low_complexity Low_complexity 1 43 0 2000 145 3 13 chr1 7396346 7396650 -235267703 + AluJb SINE Alu 1 301 -11 466 224 56 8 chr1 7396756 7396881 -235267472 + MLT1J2 LTR MaLR 23 153 -297 244 254 16 0 chr1 7396960 7397023 -235267330 + MLT1J2 LTR MaLR 266 329 -121 255 286 41 61 chr1 7397147 7397245 -235267108 - L3 LINE CR1 -943 634 539 4138 133 31 2 chr1 7397394 7398011 -235266342 + MER41B LTR ERV1 1 635 0 1253 113 0 0 chr1 7398490 7398658 -235265695 + AluSq SINE Alu 140 307 -6 2110 128 0 39 chr1 7400212 7400518 -235263835 - AluJo SINE Alu -18 294 1 355 317 7 7 chr1 7400713 7400855 -235263498 - L1M4 LINE L1 -3329 2817 2676 2243 108 0 10 chr1 7401342 7401647 -235262706 + AluSx SINE Alu 1 302 -10 2009 119 0 11 chr1 7401647 7401931 -235262422 + AluSc SINE Alu 1 282 -27 502 218 0 0 chr1 7402047 7402148 -235262205 + U6 snRNA snRNA 1 101 -6 236 230 159 0 chr1 7402388 7402514 -235261839 + L1M4 LINE L1 2897 3042 -3104 2393 85 0 7 chr1 7402610 7402917 -235261436 + AluSc SINE Alu 2 306 -3 416 153 0 12 chr1 7402922 7403007 -235261346 - MER96B DNA MER1_type? -266 151 68 306 164 33 0 chr1 7403210 7403271 -235261082 + MER45 DNA AcHobo 44 106 -1475 239 175 0 0 chr1 7403265 7403305 -235261048 + MER45 DNA AcHobo 1542 1581 0 * 686 239 137 9 chr1 7404225 7404515 -235259838 + MER58B DNA MER1_type 6 341 0 2488 65 0 0 chr1 7405353 7405643 -235258710 + AluY SINE Alu 1 290 -21 2844 80 0 3 chr1 7405674 7406037 -235258316 + THE1B LTR MaLR 1 362 -2 572 310 57 27 chr1 7406290 7406625 -235257728 - L1ME4a LINE L1 -255 5866 5522 2379 100 0 0 chr1 7406642 7406941 -235257412 - AluSg SINE Alu -11 299 1 1652 130 8 8 chr1 7408333 7408606 -235255747 - AluJb SINE Alu 0 319 47 1985 145 3 0 chr1 7409336 7409626 -235254727 + AluJb SINE Alu 1 291 -21 907 117 0 0 chr1 7409634 7409754 -235254599 + AluJb SINE Alu 1 120 -192 255 213 0 0 chr1 7409772 7409847 -235254506 + A-rich Low_complexity Low_complexity 1 75 0 2488 77 3 0 chr1 7410260 7410559 -235253794 + AluSx SINE Alu 1 300 -12 2549 51 0 0 chr1 7410979 7411274 -235253079 + AluY SINE Alu 1 295 -16 1037 194 0 0 chr1 7411413 7411588 -235252765 - AluJ SINE Alu -13 299 125 65 74 0 0 chr1 7411588 7411723 -235252630 + AT_rich Low_complexity Low_complexity 1 135 0 1766 142 3 42 chr1 7411853 7412142 -235252211 + AluJb SINE Alu 5 282 -30 804 186 0 0 chr1 7412156 7412285 -235252068 - AluJ SINE Alu -169 133 5 252 0 0 0 chr1 7412302 7412330 -235252023 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 200 311 20 66 chr1 7412332 7412483 -235251870 - L3b LINE CR1 -258 1325 1182 2037 135 0 3 chr1 7412751 7413072 -235251281 - AluSg SINE Alu 0 320 1 2246 107 0 0 chr1 7413096 7413385 -235250968 - AluSx SINE Alu -17 295 7 2144 125 3 3 chr1 7413437 7413766 -235250587 + AluSq SINE Alu 1 313 0 1386 74 0 0 chr1 7413766 7413928 -235250425 + AluSg/x SINE Alu 134 295 -17 1670 172 0 47 chr1 7414087 7414406 -235249947 - AluJb SINE Alu -8 304 1 1234 185 14 14 chr1 7414844 7415066 -235249287 - AluJb SINE Alu -10 302 81 902 202 39 6 chr1 7415396 7415574 -235248779 + MIR SINE MIR 19 202 -60 1054 174 10 20 chr1 7415678 7415874 -235248479 - AluJo SINE Alu -13 299 106 2918 72 3 8 chr1 7415874 7416247 -235248106 + THE1C LTR MaLR 1 371 -4 745 183 0 0 chr1 7416247 7416361 -235247992 - AluJo SINE Alu -187 115 1 2291 122 3 3 chr1 7417059 7417371 -235246982 + AluSq SINE Alu 1 312 -1 613 237 34 31 chr1 7417508 7417717 -235246636 - MIR SINE MIR -49 213 7 2489 76 0 0 chr1 7417762 7418063 -235246290 - AluSq SINE Alu -12 301 1 324 282 237 1 chr1 7418861 7419049 -235245304 - MIR SINE MIR -11 251 23 380 279 146 22 chr1 7419325 7419640 -235244713 + L1M4 LINE L1 2148 2501 -3645 2154 108 0 78 chr1 7419640 7419975 -235244378 + AluSx SINE Alu 1 309 -3 439 125 0 9 chr1 7420043 7420306 -235244047 + AluSq SINE Alu 1 309 -4 314 309 31 24 chr1 7420309 7420386 -235243967 + L1M4 LINE L1 2609 2684 -3462 2309 103 0 0 chr1 7420386 7420687 -235243666 - AluSg SINE Alu -9 301 1 314 309 31 24 chr1 7420687 7420897 -235243456 + L1M4 LINE L1 2684 2898 -3248 23 0 0 0 chr1 7420924 7420947 -235243406 + AT_rich Low_complexity Low_complexity 1 23 0 1251 305 74 11 chr1 7420974 7421768 -235242585 + L1M4 LINE L1 3002 3845 -2301 617 213 57 189 chr1 7421798 7422465 -235241888 + MER21B LTR ERV1 13 591 -272 402 259 69 71 chr1 7422625 7422783 -235241570 + L1M4 LINE L1 3890 4047 -2099 2181 127 3 3 chr1 7422783 7423091 -235241262 - AluSq SINE Alu -5 308 1 402 259 69 71 chr1 7423091 7423411 -235240942 + L1M4 LINE L1 4047 4367 -1779 2297 92 3 3 chr1 7423535 7423829 -235240524 - AluSg SINE Alu -16 294 1 2061 98 63 3 chr1 7423831 7424116 -235240237 - AluSg SINE Alu -8 302 1 915 156 38 44 chr1 7424184 7424344 -235240009 + AluJb SINE Alu 137 295 -17 1576 199 42 63 chr1 7424349 7424659 -235239694 + L1ME2 LINE L1 5727 6042 -122 1768 161 10 30 chr1 7424659 7424958 -235239395 - AluJb SINE Alu -19 293 1 1576 199 42 63 chr1 7424958 7424976 -235239377 + L1ME2 LINE L1 6042 6059 -105 2073 110 18 4 chr1 7424976 7425257 -235239096 - AluSg SINE Alu -25 285 1 1576 199 42 63 chr1 7425257 7425374 -235238979 + L1ME2 LINE L1 6059 6164 0 1632 153 38 24 chr1 7425449 7425737 -235238616 - AluJo SINE Alu -9 303 12 1496 111 0 0 chr1 7425754 7425944 -235238409 - AluSg/x SINE Alu -13 299 110 456 131 0 0 chr1 7425944 7426005 -235238348 - AluS SINE Alu -248 63 3 894 143 0 7 chr1 7426015 7426155 -235238198 - AluJb SINE Alu -18 294 156 2217 116 3 3 chr1 7426739 7427040 -235237313 - AluSx SINE Alu -11 301 1 2315 91 0 10 chr1 7427323 7427458 -235236895 + AluSx SINE Alu 1 136 -176 2487 70 0 0 chr1 7427458 7427757 -235236596 + AluY SINE Alu 1 299 -12 2315 91 0 10 chr1 7427757 7427918 -235236435 + AluSx SINE Alu 136 294 -18 1874 160 3 22 chr1 7428000 7428318 -235236035 + AluJb SINE Alu 1 312 0 999 173 0 0 chr1 7428318 7428480 -235235873 + AluJo/FRAM SINE Alu 144 305 -7 505 325 202 22 chr1 7428726 7429092 -235235261 + L2 LINE L2 2840 3271 -1 954 110 0 0 chr1 7429419 7429546 -235234807 - FLAM_C SINE Alu -16 127 1 670 101 0 0 chr1 7429718 7429807 -235234546 + AluSx SINE Alu 4 92 -220 2416 81 0 7 chr1 7429807 7430103 -235234250 + AluY SINE Alu 1 294 -17 1571 92 53 0 chr1 7430101 7430307 -235234046 + AluSx SINE Alu 71 287 -23 * 27 29 0 0 chr1 7431044 7431078 -235233275 + AT_rich Low_complexity Low_complexity 1 34 0 256 188 29 0 chr1 7431252 7431321 -235233032 + CT-rich Low_complexity Low_complexity 2 72 0 1934 128 4 11 chr1 7431720 7431994 -235232359 - AluSq SINE Alu -41 272 1 2214 116 7 19 chr1 7432003 7432176 -235232177 - AluSp SINE Alu -7 306 137 2235 96 28 0 chr1 7432176 7432467 -235231886 - AluSg SINE Alu -9 301 3 2214 116 7 19 chr1 7432467 7432603 -235231750 - AluSp SINE Alu -176 137 1 2139 126 0 0 chr1 7433212 7433505 -235230848 - AluSx SINE Alu -11 301 9 351 0 0 0 chr1 7433551 7433590 -235230763 + (TG)n Simple_repeat Simple_repeat 1 39 0 27 29 0 0 chr1 7434138 7434172 -235230181 + AT_rich Low_complexity Low_complexity 1 34 0 739 157 9 0 chr1 7434172 7434287 -235230066 - AluJb SINE Alu -194 118 3 540 275 30 67 chr1 7434994 7435090 -235229263 - MLT1I LTR MaLR -150 259 161 2117 138 32 35 chr1 7435090 7435466 -235228887 - THE1C LTR MaLR 0 375 1 540 275 30 67 chr1 7435466 7435596 -235228757 - MLT1I LTR MaLR -248 161 42 1574 167 13 45 chr1 7435596 7435735 -235228618 + AluJo SINE Alu 1 143 -169 2040 73 0 8 chr1 7435735 7435994 -235228359 + AluSc SINE Alu 40 296 -13 1574 167 13 45 chr1 7435994 7436165 -235228188 + AluJo SINE Alu 143 301 -11 540 275 30 67 chr1 7436165 7436206 -235228147 - MLT1I LTR MaLR -367 42 1 1895 185 22 53 chr1 7436357 7436536 -235227817 + L1MB8 LINE L1 5724 5907 -271 2401 66 3 13 chr1 7436536 7436837 -235227516 + AluY SINE Alu 2 299 -12 1895 185 22 53 chr1 7436837 7437110 -235227243 + L1MB8 LINE L1 5907 6162 -16 289 264 88 22 chr1 7437493 7437584 -235226769 + L2 LINE L2 3155 3251 -21 217 104 0 42 chr1 7437586 7437634 -235226719 + (TAA)n Simple_repeat Simple_repeat 3 48 0 550 75 0 0 chr1 7437698 7437765 -235226588 - AluSg/x SINE Alu -83 229 163 812 132 5 138 chr1 7437769 7437922 -235226431 + L1MB7 LINE L1 6002 6127 -57 1842 138 38 28 chr1 7437922 7438211 -235226142 + AluJb SINE Alu 1 292 -20 812 132 5 138 chr1 7438211 7438246 -235226107 + L1MB7 LINE L1 6127 6165 -19 2259 121 0 0 chr1 7439582 7439887 -235224466 + AluSq SINE Alu 1 305 -8 1266 260 39 41 chr1 7440196 7440397 -235223956 + MLT2C2 LTR ERVL 1 201 -263 2434 77 3 10 chr1 7440397 7440709 -235223644 + AluSg SINE Alu 1 310 0 2324 109 3 0 chr1 7440711 7441015 -235223338 + AluSp SINE Alu 1 305 -8 1266 260 39 41 chr1 7441015 7441057 -235223296 + MLT2C2 LTR ERVL 202 243 -221 752 172 0 26 chr1 7441057 7441195 -235223158 + L1MB3 LINE L1 6035 6170 -13 1895 193 25 6 chr1 7441195 7441552 -235222801 + MLT1A1 LTR MaLR 1 364 -1 752 172 0 26 chr1 7441552 7441564 -235222789 + L1MB3 LINE L1 6170 6181 -2 1266 260 39 41 chr1 7441564 7441577 -235222776 + MLT2C2 LTR ERVL 243 255 -209 1821 145 0 30 chr1 7441577 7441873 -235222480 + AluJb SINE Alu 1 287 -25 1266 260 39 41 chr1 7441873 7442076 -235222277 + MLT2C2 LTR ERVL 255 464 0 289 304 63 0 chr1 7442847 7442926 -235221427 + MIR SINE MIR 23 106 -102 380 144 10 31 chr1 7443064 7443161 -235221192 + CT-rich Low_complexity Low_complexity 3 97 0 793 149 0 28 chr1 7443161 7443342 -235221011 + (TTC)n Simple_repeat Simple_repeat 2 177 0 1028 105 0 0 chr1 7443344 7443477 -235220876 - FLAM_C SINE Alu 0 133 1 1921 233 136 21 chr1 7443682 7444342 -235220011 - MER21B LTR ERV1 -127 736 1 2440 92 0 0 chr1 7444372 7444677 -235219676 - AluSx SINE Alu -7 305 1 1094 170 0 0 chr1 7445041 7445212 -235219141 + AluJb SINE Alu 130 300 -12 1894 146 3 55 chr1 7446432 7446761 -235217592 + AluJb SINE Alu 1 312 0 5148 110 100 3 chr1 7447288 7448041 -235216312 + LTR12 LTR ERV1 1 826 0 316 321 121 0 chr1 7448193 7448333 -235216020 + MIR3 SINE MIR 51 207 -1 2199 120 0 7 chr1 7448436 7448735 -235215618 - AluSx SINE Alu -15 297 1 1591 161 49 18 chr1 7449067 7449352 -235215001 + AluJb SINE Alu 1 294 -18 2097 187 29 37 chr1 7449595 7449718 -235214635 - L1MD3 LINE L1 0 7995 7873 2326 103 7 0 chr1 7449718 7450018 -235214335 - AluSx SINE Alu -6 306 5 2097 187 29 37 chr1 7450018 7450424 -235213929 - L1MD3 LINE L1 -122 7873 5815 225 108 0 0 chr1 7450425 7450462 -235213891 + (T)n Simple_repeat Simple_repeat 1 37 0 1132 132 5 63 chr1 7450477 7450667 -235213686 - AluJo SINE Alu -133 179 1 598 226 0 0 chr1 7450667 7450791 -235213562 - L1MD3 LINE L1 -519 5825 5702 2142 144 0 0 chr1 7450949 7451255 -235213098 + AluSx SINE Alu 1 306 -6 696 156 0 67 chr1 7451428 7451563 -235212790 + FLAM_C SINE Alu 14 139 -4 225 253 152 72 chr1 7452012 7452047 -235212306 - HAL1 LINE L1 -125 2382 2351 1173 83 6 24 chr1 7452047 7452215 -235212138 - L1PA10 LINE L1 -3 6165 6001 225 253 152 72 chr1 7452215 7452294 -235212059 - HAL1 LINE L1 -156 2351 2280 2190 101 3 10 chr1 7452294 7452592 -235211761 - AluSx SINE Alu -16 296 1 225 253 152 72 chr1 7452592 7453098 -235211255 - HAL1 LINE L1 -227 2280 1675 296 158 66 26 chr1 7453427 7453503 -235210850 - MER5B DNA MER1_type -95 83 5 2362 98 0 19 chr1 7453848 7454165 -235210188 - AluY SINE Alu 0 311 1 1964 135 45 0 chr1 7454214 7454502 -235209851 + AluJb SINE Alu 1 301 -11 278 323 8 53 chr1 7454811 7454944 -235209409 + MIR SINE MIR 56 182 -80 672 205 145 0 chr1 7455288 7455454 -235208899 - MLT1B LTR MaLR 0 390 201 2027 150 0 3 chr1 7455484 7455797 -235208556 - AluJb SINE Alu 0 312 1 2342 80 0 10 chr1 7455847 7456173 -235208180 - AluY SINE Alu 0 311 1 586 176 55 93 chr1 7456309 7456491 -235207862 - MLT1B LTR MaLR -211 179 5 279 0 0 0 chr1 7456493 7456524 -235207829 + (CA)n Simple_repeat Simple_repeat 1 31 0 1829 176 28 11 chr1 7456747 7457110 -235207243 + L1MA4 LINE L1 5914 6282 -18 2201 119 0 0 chr1 7457111 7457405 -235206948 - AluSx SINE Alu -18 294 1 185 62 0 31 chr1 7458314 7458346 -235206007 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1937 141 0 14 chr1 7458348 7458632 -235205721 - AluJb SINE Alu -28 284 5 2300 101 0 0 chr1 7458808 7459104 -235205249 + AluSc SINE Alu 1 296 -13 791 211 78 14 chr1 7459175 7459393 -235204960 + Zaphod DNA AcHobo 3800 4031 0 384 217 30 55 chr1 7459411 7459442 -235204911 - MLT1J LTR MaLR -172 443 413 1803 148 42 0 chr1 7459442 7459726 -235204627 - AluJo SINE Alu -16 296 1 384 217 30 55 chr1 7459726 7459842 -235204511 - MLT1J LTR MaLR -202 413 224 2352 112 0 3 chr1 7459961 7460274 -235204079 - AluSq SINE Alu -1 312 1 312 70 0 0 chr1 7460275 7460318 -235204035 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1075 134 0 0 chr1 7460318 7460467 -235203886 - AluSg/x SINE Alu -27 283 135 286 288 0 12 chr1 7460502 7460582 -235203771 - MLT1L LTR MaLR -536 79 1 2060 118 3 58 chr1 7461483 7461813 -235202540 - AluSx SINE Alu 0 312 1 626 189 39 8 chr1 7462108 7462235 -235202118 - FLAM_C SINE Alu -2 131 1 1937 139 7 10 chr1 7462285 7462588 -235201765 + AluJb SINE Alu 1 302 -10 2369 82 0 13 chr1 7463658 7463963 -235200390 - AluY SINE Alu -10 301 1 2121 120 3 7 chr1 7464270 7464571 -235199782 - AluJo SINE Alu -2 310 11 1643 172 43 13 chr1 7465449 7465752 -235198601 + AluSx SINE Alu 1 312 0 838 281 46 7 chr1 7466050 7466356 -235197997 + MLT2E LTR ERVL 2 319 -309 425 265 75 40 chr1 7466451 7466651 -235197702 + L1MC5 LINE L1 7717 7923 -38 746 152 91 15 chr1 7467925 7468057 -235196296 + FLAM_C SINE Alu 2 143 0 32 43 0 0 chr1 7468057 7468103 -235196250 + AT_rich Low_complexity Low_complexity 1 46 0 533 202 0 0 chr1 7468111 7468200 -235196153 - AluJb SINE Alu -82 230 142 567 301 62 51 chr1 7468212 7468621 -235195732 + MER34 LTR ERV1 50 466 -76 2028 140 3 31 chr1 7468621 7468942 -235195411 - AluJb SINE Alu 0 312 1 567 301 62 51 chr1 7468942 7469020 -235195333 + MER34 LTR ERV1 466 542 0 349 267 67 7 chr1 7469263 7469413 -235194940 - L1MA10 LINE L1 0 6334 6176 2263 100 7 0 chr1 7469458 7469747 -235194606 + AluSx SINE Alu 1 291 -21 2582 79 0 0 chr1 7470159 7470463 -235193890 - AluSx SINE Alu -8 304 1 1785 159 0 40 chr1 7470477 7470779 -235193574 - AluJb SINE Alu -22 290 1 1782 151 10 30 chr1 7470853 7471151 -235193202 + AluJo SINE Alu 14 305 -7 2058 121 109 73 chr1 7471337 7471516 -235192837 + MSTA LTR MaLR 1 172 -256 2541 76 0 0 chr1 7471516 7471819 -235192534 + AluSx SINE Alu 1 303 -9 2058 121 109 73 chr1 7471819 7472051 -235192302 + MSTA LTR MaLR 172 427 -1 2334 94 3 0 chr1 7472161 7472459 -235191894 - AluSx SINE Alu -13 299 1 2180 113 27 0 chr1 7472635 7472936 -235191417 + AluSx SINE Alu 1 309 -3 1900 144 3 41 chr1 7473086 7473405 -235190948 + AluJo SINE Alu 1 307 -5 215 207 0 52 chr1 7473872 7473930 -235190423 + CT-rich Low_complexity Low_complexity 5 59 0 2164 163 14 8 chr1 7473981 7474344 -235190009 - MLT1A1 LTR MaLR 0 365 1 2246 97 82 48 chr1 7474467 7474776 -235189577 + THE1B LTR MaLR 1 325 -39 2274 105 3 0 chr1 7474776 7475080 -235189273 - AluSq SINE Alu -8 305 1 2246 97 82 48 chr1 7475080 7475122 -235189231 + THE1B LTR MaLR 325 364 0 1976 214 165 11 chr1 7475575 7475743 -235188610 + L1MC4 LINE L1 6459 6600 -1442 2197 111 10 7 chr1 7475743 7476041 -235188312 - AluSx SINE Alu -13 299 1 1976 214 165 11 chr1 7476041 7476399 -235187954 + L1MC4 LINE L1 6600 7066 -976 1106 288 186 19 chr1 7476407 7476654 -235187699 + L1MC4 LINE L1 7240 7444 -598 2931 157 30 106 chr1 7476654 7476919 -235187434 + LTR8 LTR ERV1 1 285 -406 2432 89 3 6 chr1 7476919 7477232 -235187121 + AluSp SINE Alu 1 312 -1 2931 157 30 106 chr1 7477232 7477712 -235186641 + LTR8 LTR ERV1 285 689 -2 1106 288 186 19 chr1 7477712 7477927 -235186426 + L1MC4 LINE L1 7444 7622 -420 4004 91 19 2 chr1 7477927 7478468 -235185885 + MER41A LTR ERV1 1 550 -4 1106 288 186 19 chr1 7478468 7478573 -235185780 + L1MC4 LINE L1 7622 7903 -139 304 379 0 0 chr1 7478906 7479022 -235185331 + L2 LINE L2 3197 3312 -1 1928 160 3 3 chr1 7479087 7479399 -235184954 - AluJb SINE Alu 0 312 1 387 230 137 52 chr1 7480746 7481006 -235183347 - LTR48 LTR ERV1 -3 738 387 426 256 16 23 chr1 7481104 7481233 -235183120 - MER34 LTR ERV1 -411 131 4 21 36 0 0 chr1 7481242 7481270 -235183083 + AT_rich Low_complexity Low_complexity 1 28 0 2243 120 0 7 chr1 7481271 7481579 -235182774 + AluSx SINE Alu 1 306 -6 778 236 56 23 chr1 7481674 7481890 -235182463 + MIR SINE MIR 28 250 -12 2293 113 0 3 chr1 7482070 7482380 -235181973 - AluSx SINE Alu -3 309 1 2411 85 3 0 chr1 7483034 7483340 -235181013 + AluY SINE Alu 1 307 -4 300 27 0 0 chr1 7483713 7483750 -235180603 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1859 113 50 7 chr1 7484565 7484847 -235179506 - AluSx SINE Alu -18 294 1 1626 180 65 0 chr1 7485752 7486030 -235178323 - AluJo SINE Alu -16 296 1 292 182 0 39 chr1 7486035 7486112 -235178241 - L1MC2 LINE L1 0 6344 6271 1086 166 10 30 chr1 7486217 7486416 -235177937 + AluJo SINE Alu 16 210 -102 1417 89 0 31 chr1 7486432 7486623 -235177730 - AluSq SINE Alu -52 261 77 937 152 0 26 chr1 7486625 7486776 -235177577 + AluJo/FRAM SINE Alu 156 302 -10 794 131 26 13 chr1 7486779 7487445 -235176908 + (TG)n Simple_repeat Simple_repeat 1 674 0 239 270 34 27 chr1 7487460 7487608 -235176745 + (TG)n Simple_repeat Simple_repeat 1 149 0 690 163 59 0 chr1 7489959 7490094 -235174259 + L1MB4 LINE L1 6038 6180 0 453 226 111 51 chr1 7490242 7490477 -235173876 + HAL1 LINE L1 923 1171 -1336 1042 321 76 35 chr1 7490582 7491146 -235173207 + ERVL LTR ERVL 4144 4730 -1034 207 0 0 0 chr1 7492058 7492081 -235172272 + (CA)n Simple_repeat Simple_repeat 2 24 0 967 257 55 25 chr1 7492961 7493323 -235171030 + L1MC5 LINE L1 7073 7445 -516 2094 268 70 8 chr1 7493438 7494068 -235170285 + ERVL LTR ERVL 24 692 -5072 1503 218 13 7 chr1 7494262 7494560 -235169793 + AluJb SINE Alu 1 300 -12 405 175 25 0 chr1 7494961 7495041 -235169312 - L1 LINE L1 -2515 3631 3550 195 355 23 65 chr1 7495063 7495091 -235169262 - MIR SINE MIR -32 230 202 2083 115 36 0 chr1 7495091 7495370 -235168983 - AluSg SINE Alu -21 289 1 195 355 23 65 chr1 7495370 7495555 -235168798 - MIR SINE MIR -60 202 26 1079 220 45 19 chr1 7495766 7496030 -235168323 + MER58 DNA MER1_type 1 271 -2149 928 119 0 0 chr1 7496130 7496256 -235168097 - AluJb SINE Alu -186 126 1 28 29 0 0 chr1 7496256 7496291 -235168062 + AT_rich Low_complexity Low_complexity 1 35 0 200 270 175 22 chr1 7498023 7498160 -235166193 + MIR SINE MIR 99 256 -6 191 239 80 80 chr1 7498431 7498607 -235165746 - L2 LINE L2 -368 2946 2771 270 128 0 0 chr1 7499655 7499694 -235164659 + Alu SINE Alu 1 39 -264 337 237 172 0 chr1 7500016 7500109 -235164244 + L2 LINE L2 3134 3242 -30 701 305 65 4 chr1 7500665 7500911 -235163442 - MIR SINE MIR 0 262 2 207 0 0 0 chr1 7501469 7501492 -235162861 + (A)n Simple_repeat Simple_repeat 1 23 0 534 286 84 26 chr1 7501677 7501904 -235162449 + MIR SINE MIR 2 241 -21 239 340 28 0 chr1 7503301 7503407 -235160946 + GA-rich Low_complexity Low_complexity 2 110 0 969 253 77 7 chr1 7503660 7503960 -235160393 + L2 LINE L2 1598 1918 -1396 222 286 152 18 chr1 7504967 7505079 -235159274 + L2 LINE L2 3139 3265 -7 260 232 146 0 chr1 7506039 7506121 -235158232 - L2 LINE L2 0 3313 3220 806 228 94 20 chr1 7506338 7506540 -235157813 + MER20 DNA MER1_type 1 217 -2 270 186 35 12 chr1 7506670 7506756 -235157597 + (TA)n Simple_repeat Simple_repeat 2 89 0 678 207 60 0 chr1 7508025 7508175 -235156178 + MIR SINE MIR 77 235 -27 508 290 52 10 chr1 7508319 7508512 -235155841 - MIR SINE MIR -26 236 36 206 250 48 65 chr1 7508567 7508691 -235155662 - L2 LINE L2 -93 3220 3099 2272 119 0 0 chr1 7509202 7509497 -235154856 + AluSx SINE Alu 1 295 -17 535 199 175 18 chr1 7509639 7509805 -235154548 - MIR SINE MIR -39 223 32 249 208 19 0 chr1 7513026 7513079 -235151274 - L2 LINE L2 -215 3057 3004 225 326 90 17 chr1 7513098 7513276 -235151077 - L2 LINE L2 0 3313 3123 447 301 78 5 chr1 7513530 7513749 -235150604 + MIR SINE MIR 16 250 -12 191 245 245 11 chr1 7514507 7514601 -235149752 - MIR SINE MIR -116 146 31 388 211 0 0 chr1 7515129 7515205 -235149148 - MER116 DNA Mariner 0 80 5 215 236 255 0 chr1 7515277 7515383 -235148970 - L2 LINE L2 -11 3302 3170 736 150 0 0 chr1 7515796 7515909 -235148444 + L1PB4 LINE L1 6037 6149 -7 798 228 92 99 chr1 7516726 7517129 -235147224 - MLT1L LTR MaLR -9 606 207 269 268 0 0 chr1 7517105 7517161 -235147192 - MLT1J LTR MaLR -345 166 111 * 225 303 10 81 chr1 7517161 7517204 -235147149 - LTR67 LTR ERVL -386 171 80 4293 97 26 3 chr1 7517536 7518103 -235146250 + THE1A-int LTR MaLR 1001 1580 0 2737 82 6 0 chr1 7518103 7518456 -235145897 + THE1A LTR MaLR 1 355 0 1005 274 255 23 chr1 7519245 7520036 -235144317 - L2 LINE L2 -2094 1220 246 1145 222 14 0 chr1 7520680 7520901 -235143452 + MER58A DNA MER1_type 1 224 0 10866 17 1 0 chr1 7521852 7523871 -235140482 + L1PA3 LINE L1 4131 6150 -5 2008 88 11 18 chr1 7524269 7524542 -235139811 - AluSp SINE Alu -42 271 1 2278 97 3 0 chr1 7525635 7525943 -235138410 + AluSc SINE Alu 1 309 0 2063 105 4 0 chr1 7525985 7526261 -235138092 + AluSx SINE Alu 1 277 -35 2051 134 3 0 chr1 7526322 7526621 -235137732 + AluSx SINE Alu 1 300 -12 2430 81 10 10 chr1 7526974 7527284 -235137069 + AluSg SINE Alu 1 310 0 21 57 0 0 chr1 7527810 7527845 -235136508 + AT_rich Low_complexity Low_complexity 1 35 0 2295 99 3 0 chr1 7527849 7528143 -235136210 - AluSq SINE Alu -18 295 1 2091 92 56 0 chr1 7528578 7528862 -235135491 - AluSg SINE Alu -10 300 1 1691 155 6 75 chr1 7530525 7530886 -235133467 + MER2 DNA MER2_type 2 337 -8 528 276 105 20 chr1 7530903 7531055 -235133298 + MIR SINE MIR 91 255 -7 200 364 35 28 chr1 7531065 7531208 -235133145 - L2 LINE L2 -540 2774 2631 1022 92 32 38 chr1 7531229 7531414 -235132939 - LTR54 LTR ERV1 0 510 327 414 209 35 52 chr1 7531406 7531521 -235132832 - Tigger1 DNA MER2_type -2302 116 4 * 2027 142 0 7 chr1 7531814 7532116 -235132237 + AluSx SINE Alu 2 301 -11 2145 117 7 0 chr1 7532363 7532653 -235131700 - AluSx SINE Alu -20 292 1 260 179 13 0 chr1 7532857 7532935 -235131418 + CT-rich Low_complexity Low_complexity 1 79 0 375 231 74 91 chr1 7532947 7533143 -235131210 + L2 LINE L2 3076 3269 -44 1886 83 8 38 chr1 7533143 7533408 -235130945 - AluSc SINE Alu -16 293 37 375 231 74 91 chr1 7533408 7533453 -235130900 + L2 LINE L2 3269 3313 0 696 279 104 5 chr1 7534514 7534736 -235129617 - MIR SINE MIR -12 250 7 262 294 39 0 chr1 7536830 7536932 -235127421 - HAL1 LINE L1 -83 2424 2319 1660 176 22 45 chr1 7536933 7537246 -235127107 - AluJb SINE Alu -6 306 1 874 230 11 0 chr1 7537254 7537445 -235126908 - AluJb SINE Alu -2 310 118 1769 186 4 0 chr1 7537525 7537800 -235126553 - AluJb SINE Alu -31 281 6 943 213 163 80 chr1 7537832 7537913 -235126440 - HAL1 LINE L1 -297 2210 2137 2296 74 3 0 chr1 7537913 7538197 -235126156 - AluSq SINE Alu -28 285 1 943 213 163 80 chr1 7538197 7538255 -235126098 - HAL1 LINE L1 -370 2137 2085 2206 107 0 0 chr1 7538255 7538545 -235125808 + AluSc SINE Alu 1 290 -19 943 213 163 80 chr1 7538545 7539042 -235125311 - HAL1 LINE L1 -422 2085 1520 23 0 0 0 chr1 7539255 7539278 -235125075 + AT_rich Low_complexity Low_complexity 1 23 0 2215 111 0 0 chr1 7539656 7539975 -235124378 - AluSq SINE Alu 0 319 1 24 0 0 0 chr1 7539979 7540003 -235124350 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr1 7540110 7540146 -235124207 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr1 7540615 7540652 -235123701 + AT_rich Low_complexity Low_complexity 1 37 0 2176 110 0 0 chr1 7542240 7542530 -235121823 - AluSx SINE Alu 0 312 23 2324 80 10 0 chr1 7542612 7542912 -235121441 + AluY SINE Alu 1 303 -8 248 296 82 22 chr1 7543630 7543765 -235120588 + L1MC/D LINE L1 5682 5824 -1984 818 128 14 43 chr1 7544009 7544150 -235120203 + FLAM_C SINE Alu 1 137 -6 2505 61 0 26 chr1 7544208 7544521 -235119832 + AluY SINE Alu 2 306 -5 1871 105 83 78 chr1 7544605 7544801 -235119552 - THE1B LTR MaLR 0 364 164 1907 135 6 52 chr1 7544801 7545127 -235119226 + AluSx SINE Alu 1 311 -1 1871 105 83 78 chr1 7545127 7545291 -235119062 - THE1B LTR MaLR -200 164 2 1371 181 115 0 chr1 7545311 7545615 -235118738 - MER44D DNA MER2_type 0 609 1 698 176 50 0 chr1 7547135 7547254 -235117099 - FLAM_A SINE Alu -8 125 1 2409 81 10 0 chr1 7547285 7547592 -235116761 - AluY SINE Alu -1 310 1 292 320 0 0 chr1 7547898 7547973 -235116380 - L2 LINE L2 -194 3078 3004 231 335 66 36 chr1 7548780 7548947 -235115406 + MIR SINE MIR 37 208 -54 375 23 0 0 chr1 7551815 7551859 -235112494 + (TG)n Simple_repeat Simple_repeat 2 45 0 2298 106 0 0 chr1 7552818 7553120 -235111233 - AluSg SINE Alu -6 304 3 443 274 137 21 chr1 7553785 7554019 -235110334 + MIR SINE MIR 2 262 0 * 469 246 105 9 chr1 7553987 7554101 -235110252 - L2 LINE L2 -22 3291 3167 461 133 0 36 chr1 7554151 7554234 -235110119 + AluJ/FRAM SINE Alu 224 303 -9 730 146 0 83 chr1 7554329 7554473 -235109880 + FLAM_C SINE Alu 1 132 -1 22 56 0 0 chr1 7555028 7555064 -235109289 + AT_rich Low_complexity Low_complexity 1 36 0 417 91 15 0 chr1 7555064 7555130 -235109223 + MER41B LTR ERV1 481 547 -88 2212 82 14 0 chr1 7555459 7555750 -235108603 + AluY SINE Alu 1 295 -16 21 36 0 0 chr1 7555793 7555821 -235108532 + AT_rich Low_complexity Low_complexity 1 28 0 2202 114 0 3 chr1 7556214 7556520 -235107833 - AluSx SINE Alu -7 305 1 1786 166 7 3 chr1 7556527 7556817 -235107536 - AluSx SINE Alu -21 291 1 4493 206 44 16 chr1 7556817 7557374 -235106979 - L1P4 LINE L1 -383 5785 5245 1873 141 3 36 chr1 7557374 7557678 -235106675 - AluSx SINE Alu -18 294 1 4493 206 44 16 chr1 7557678 7558373 -235105980 - L1P4 LINE L1 -923 5245 4477 2142 136 0 0 chr1 7558373 7558667 -235105686 - AluSg SINE Alu -16 294 1 4493 206 44 16 chr1 7558667 7559057 -235105296 - L1P4 LINE L1 -1691 4477 4099 4471 161 29 9 chr1 7559219 7560085 -235104268 - L1MC2 LINE L1 -1 6343 5461 821 140 54 59 chr1 7560434 7560497 -235103856 - MER2 DNA MER2_type -160 185 123 2065 138 3 7 chr1 7560497 7560802 -235103551 + AluSx SINE Alu 1 304 -8 821 140 54 59 chr1 7560802 7560924 -235103429 - MER2 DNA MER2_type -222 123 1 2271 85 0 0 chr1 7561951 7562268 -235102085 + AluSc SINE Alu 1 317 0 1524 195 8 57 chr1 7562690 7563075 -235101278 + MLT1A2 LTR MaLR 1 366 -8 333 171 0 45 chr1 7564092 7564180 -235100173 - L1MB8 LINE L1 -1 6177 6094 1235 144 14 0 chr1 7564180 7564395 -235099958 - MER47A DNA MER2_type -1 365 148 236 255 0 0 chr1 7564401 7564448 -235099905 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 1051 188 99 14 chr1 7564455 7564553 -235099800 - AluJo SINE Alu -66 246 158 1931 126 23 26 chr1 7564553 7564863 -235099490 - AluSx SINE Alu -3 309 1 1051 188 99 14 chr1 7564863 7564987 -235099366 - AluJo SINE Alu -154 158 5 601 226 0 8 chr1 7564987 7565120 -235099233 - MER47A DNA MER2_type -234 132 1 1067 269 161 81 chr1 7565657 7566382 -235097971 + L2 LINE L2 1230 1895 -1419 2326 101 0 0 chr1 7566382 7566679 -235097674 - AluSq SINE Alu -16 297 1 1067 269 161 81 chr1 7566679 7566864 -235097489 + L2 LINE L2 1895 2064 -1250 1929 169 0 7 chr1 7566864 7567166 -235097187 + AluJb SINE Alu 1 300 -12 1067 269 161 81 chr1 7567166 7567319 -235097034 + L2 LINE L2 2064 2380 -934 1296 63 0 84 chr1 7567517 7567707 -235096646 - AluY SINE Alu -137 174 1 1802 174 3 0 chr1 7567989 7568271 -235096082 + AluJo SINE Alu 1 283 -29 311 64 0 21 chr1 7568271 7568318 -235096035 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 198 0 0 0 chr1 7569181 7569203 -235095150 + (ATTG)n Simple_repeat Simple_repeat 2 23 0 1934 138 3 0 chr1 7569203 7569486 -235094867 - AluSq SINE Alu -29 284 1 21 0 0 0 chr1 7569486 7569507 -235094846 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr1 7570088 7570115 -235094238 + (T)n Simple_repeat Simple_repeat 1 27 0 1086 176 40 10 chr1 7574030 7574229 -235090124 + MER3 DNA MER1_type 1 205 -4 1805 86 11 156 chr1 7574424 7574783 -235089570 - AluSc SINE Alu -2 307 1 479 284 44 38 chr1 7575306 7575489 -235088864 - MIR SINE MIR -14 248 65 2342 95 13 0 chr1 7575693 7575999 -235088354 - AluSx SINE Alu -2 310 1 1414 167 31 0 chr1 7577132 7577359 -235086994 + MER46A DNA MER2_type 1 234 -2 528 16 0 0 chr1 7577359 7577420 -235086933 + (TATG)n Simple_repeat Simple_repeat 2 62 0 1142 123 0 0 chr1 7577420 7577574 -235086779 - AluSq SINE Alu -27 286 133 470 113 0 0 chr1 7577574 7577636 -235086717 - AluJ SINE Alu -131 181 120 850 172 0 8 chr1 7577637 7577771 -235086582 - AluJ SINE Alu -169 133 1 27 49 0 0 chr1 7579058 7579099 -235085254 + AT_rich Low_complexity Low_complexity 1 41 0 1557 168 51 7 chr1 7579106 7579380 -235084973 - AluJb SINE Alu -21 291 6 2203 92 11 0 chr1 7579751 7580056 -235084297 + AluSq SINE Alu 1 308 0 1572 200 3 3 chr1 7580673 7580973 -235083380 + AluJo SINE Alu 1 300 -12 725 147 0 66 chr1 7581023 7581159 -235083194 - FLAM_C SINE Alu -16 127 1 996 233 324 29 chr1 7581965 7582792 -235081561 + L2 LINE L2 2183 3310 -3 482 110 30 70 chr1 7583680 7583748 -235080605 - L1MB7 LINE L1 0 6184 6115 1672 130 3 98 chr1 7583748 7584064 -235080289 + AluJb SINE Alu 1 286 -26 482 0 17 0 chr1 7584064 7584122 -235080231 + (CA)n Simple_repeat Simple_repeat 2 60 0 482 110 30 70 chr1 7584122 7584152 -235080201 - L1MB7 LINE L1 -67 6117 6089 356 0 23 0 chr1 7584178 7584222 -235080131 + (CA)n Simple_repeat Simple_repeat 2 46 0 1702 190 36 12 chr1 7584223 7584600 -235079753 - L1MB8 LINE L1 -63 6115 5728 1171 190 14 23 chr1 7585076 7585297 -235079056 + MER20 DNA MER1_type 1 219 0 2133 111 0 7 chr1 7585446 7585754 -235078599 - AluSx SINE Alu 0 306 1 550 311 34 0 chr1 7587068 7587245 -235077108 + MIR SINE MIR 2 184 -78 303 153 141 59 chr1 7587348 7587433 -235076920 + MIR SINE MIR 171 262 0 709 353 70 26 chr1 7587747 7588474 -235075879 - L2 LINE L2 -38 3234 2475 791 136 0 9 chr1 7588474 7588584 -235075769 + AluJo SINE Alu 49 157 -155 329 310 148 35 chr1 7588599 7588970 -235075383 - L2 LINE L2 -963 2351 1939 214 258 147 85 chr1 7589035 7589388 -235074965 - L2 LINE L2 -79 3193 2819 326 143 14 29 chr1 7589436 7589506 -235074847 + L1MB8 LINE L1 6110 6178 0 237 298 16 99 chr1 7589536 7589657 -235074696 - L2 LINE L2 -625 2689 2579 504 270 44 53 chr1 7590151 7590377 -235073976 - MIR SINE MIR -11 251 28 1487 181 0 77 chr1 7590428 7590754 -235073599 - AluJo SINE Alu -11 301 1 1002 254 195 45 chr1 7591265 7592254 -235072099 + L2 LINE L2 2169 3309 -4 208 255 174 67 chr1 7592557 7592706 -235071647 + MIR SINE MIR 28 192 -70 30 83 0 0 chr1 7593029 7593101 -235071252 + AT_rich Low_complexity Low_complexity 1 72 0 2171 122 0 0 chr1 7593568 7593872 -235070481 - AluSx SINE Alu -8 304 1 2326 101 3 0 chr1 7594363 7594671 -235069682 - AluY SINE Alu -2 309 1 264 308 132 0 chr1 7594856 7594947 -235069406 + L2 LINE L2 3168 3270 -2 26 0 0 0 chr1 7594984 7595010 -235069343 + AT_rich Low_complexity Low_complexity 1 26 0 2059 127 20 0 chr1 7595288 7595580 -235068773 - AluSx SINE Alu -14 298 1 2338 92 0 16 chr1 7595808 7596124 -235068229 - AluY SINE Alu 0 311 1 733 197 0 8 chr1 7596182 7596314 -235068039 - FLAM_C SINE Alu -2 131 1 192 226 0 0 chr1 7596856 7596918 -235067435 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 2257 105 3 0 chr1 7597639 7597934 -235066419 + AluSx SINE Alu 1 296 -16 1929 128 7 17 chr1 7598231 7598519 -235065834 + AluJb SINE Alu 24 308 -4 1416 169 32 18 chr1 7598809 7599087 -235065266 + AluJo SINE Alu 1 282 -30 2384 55 41 0 chr1 7599428 7599719 -235064634 - AluY SINE Alu -8 303 1 261 235 147 20 chr1 7599937 7600039 -235064314 - MER103 DNA DNA -7 159 45 578 218 0 0 chr1 7600148 7600249 -235064104 + FAM SINE Alu 2 102 -83 2305 152 24 8 chr1 7600307 7600676 -235063677 + THE1C LTR MaLR 1 375 0 875 225 25 0 chr1 7601165 7601325 -235063028 + FRAM SINE Alu 1 164 -2 897 194 25 0 chr1 7601404 7601564 -235062789 - AluJb SINE Alu -11 301 138 1547 201 15 0 chr1 7601740 7602013 -235062340 - AluJo SINE Alu -35 277 1 1931 103 3 125 chr1 7602038 7602234 -235062119 - AluSx SINE Alu -9 293 151 2381 82 0 0 chr1 7602234 7602528 -235061825 - AluSc SINE Alu -15 294 1 1931 103 3 125 chr1 7602528 7602660 -235061693 - AluSx SINE Alu -151 151 5 182 200 33 17 chr1 7603074 7603134 -235061219 + L2 LINE L2 2912 2972 -342 2358 90 0 0 chr1 7603398 7603697 -235060656 - AluSx SINE Alu -13 299 1 1811 167 0 0 chr1 7604613 7604900 -235059453 + AluJb SINE Alu 1 287 -25 865 207 177 10 chr1 7604910 7605177 -235059176 + L1ME3A LINE L1 5852 6161 -9 348 24 0 0 chr1 7605466 7605507 -235058846 + (CA)n Simple_repeat Simple_repeat 2 42 0 1355 192 77 133 chr1 7605924 7606053 -235058300 - MLT1C LTR MaLR 0 467 332 1317 162 178 0 chr1 7606053 7606306 -235058047 - AluJo SINE Alu -14 298 1 1355 192 77 133 chr1 7606306 7606578 -235057775 - MLT1C LTR MaLR -135 332 97 1575 195 6 31 chr1 7606578 7606896 -235057457 - AluJo SINE Alu -2 310 1 1355 192 77 133 chr1 7606896 7606988 -235057365 - MLT1C LTR MaLR -370 97 1 463 262 154 35 chr1 7607469 7607633 -235056720 + MER5A DNA MER1_type 2 188 -1 267 265 167 61 chr1 7608005 7608137 -235056216 - MIR SINE MIR -54 208 63 663 188 0 0 chr1 7608350 7608451 -235055902 + FLAM_A SINE Alu 1 101 -41 325 264 97 21 chr1 7609922 7610066 -235054287 + L2 LINE L2 852 1006 -2308 262 295 115 0 chr1 7610099 7610177 -235054176 + L2 LINE L2 3202 3288 -25 431 214 111 0 chr1 7610834 7610951 -235053402 + MIR SINE MIR 111 240 -22 29 0 0 0 chr1 7611050 7611079 -235053274 + AT_rich Low_complexity Low_complexity 1 29 0 960 188 0 12 chr1 7612967 7613137 -235051216 - AluJb SINE Alu -9 303 136 2229 73 59 0 chr1 7614070 7614359 -235049994 + AluY SINE Alu 1 306 -5 1278 195 130 38 chr1 7614640 7615097 -235049256 + Charlie4a DNA MER1_type 3 493 -15 27 0 0 0 chr1 7616164 7616191 -235048162 + AT_rich Low_complexity Low_complexity 1 27 0 726 223 60 107 chr1 7616327 7616568 -235047785 - MLT1J LTR MaLR -220 291 40 207 69 0 0 chr1 7616568 7616597 -235047756 + (TTA)n Simple_repeat Simple_repeat 2 30 0 978 173 13 0 chr1 7616599 7616755 -235047598 - FRAM SINE Alu -8 158 1 726 223 60 107 chr1 7616755 7616810 -235047543 - MLT1J LTR MaLR -472 39 6 2150 96 7 0 chr1 7616855 7617204 -235047149 + AluSp SINE Alu 1 351 0 317 299 110 16 chr1 7617222 7617349 -235047004 + L2 LINE L2 3127 3265 -7 2381 76 0 0 chr1 7618107 7618396 -235045957 + AluY SINE Alu 1 289 -22 1740 173 7 7 chr1 7619191 7619497 -235044856 - AluJb SINE Alu -6 306 1 300 137 0 0 chr1 7619664 7619715 -235044638 + (TG)n Simple_repeat Simple_repeat 2 52 0 1607 183 11 21 chr1 7619719 7620004 -235044349 - AluJo SINE Alu -30 282 1 819 195 6 30 chr1 7621724 7621888 -235042465 - FRAM SINE Alu -16 160 1 709 183 0 51 chr1 7622361 7622378 -235041975 - FRAM SINE Alu -150 162 146 288 77 0 0 chr1 7622378 7622417 -235041936 + (TATG)n Simple_repeat Simple_repeat 1 39 0 709 183 0 51 chr1 7622417 7622536 -235041817 - FRAM SINE Alu -166 146 33 1689 101 36 8 chr1 7625528 7625775 -235038578 - AluSx SINE Alu -15 297 44 26 0 0 0 chr1 7625775 7625801 -235038552 + AT_rich Low_complexity Low_complexity 1 26 0 3416 86 52 7 chr1 7626259 7626724 -235037629 - LTR19A LTR ERV1 0 486 1 810 172 0 0 chr1 7627538 7627660 -235036693 + FLAM_C SINE Alu 2 123 -20 559 157 0 0 chr1 7627885 7627968 -235036385 + AluJ/FLAM SINE Alu 2 84 -228 216 0 0 0 chr1 7627978 7628002 -235036351 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 180 250 150 0 chr1 7628426 7628486 -235035867 + MIR SINE MIR 82 150 -112 1969 130 0 14 chr1 7629689 7629973 -235034380 - AluSx SINE Alu -27 285 6 225 0 0 0 chr1 7630631 7630656 -235033697 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr1 7630818 7630846 -235033507 + AT_rich Low_complexity Low_complexity 1 28 0 392 240 10 20 chr1 7631930 7632030 -235032323 - MER94 DNA DNA -34 100 2 199 354 46 39 chr1 7633124 7633254 -235031099 - L2 LINE L2 -9 3263 3133 411 269 80 45 chr1 7634723 7634924 -235029429 + MIR SINE MIR 16 223 -39 222 244 35 58 chr1 7634981 7635067 -235029286 + L2 LINE L2 3229 3312 -1 2151 100 10 3 chr1 7635782 7636072 -235028281 - AluSq SINE Alu -13 300 9 23 33 0 0 chr1 7636850 7636880 -235027473 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 7637338 7637365 -235026988 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 101 0 0 chr1 7640527 7640606 -235023747 + AT_rich Low_complexity Low_complexity 1 79 0 1932 165 0 0 chr1 7641612 7641921 -235022432 - AluSx SINE Alu -3 309 1 2026 127 3 7 chr1 7641928 7642228 -235022125 - AluY SINE Alu -10 301 3 584 274 11 22 chr1 7642311 7642490 -235021863 + MIR SINE MIR 85 261 -1 2248 93 3 22 chr1 7642523 7642834 -235021519 - AluSg SINE Alu -5 305 1 1167 178 5 10 chr1 7643075 7643283 -235021070 + AluJb SINE Alu 3 209 -103 21 36 0 0 chr1 7643393 7643421 -235020932 + AT_rich Low_complexity Low_complexity 1 28 0 2230 121 3 0 chr1 7643900 7644206 -235020147 - AluSx SINE Alu -5 307 1 1036 90 23 0 chr1 7644206 7644339 -235020014 - AluSq/x SINE Alu -177 136 1 1530 227 20 7 chr1 7644623 7644918 -235019435 - AluJb SINE Alu -3 299 1 1296 166 3 124 chr1 7644955 7645118 -235019235 + AluSp SINE Alu 1 99 -214 2296 113 0 0 chr1 7645118 7645418 -235018935 + AluSx SINE Alu 1 300 -12 1296 166 3 124 chr1 7645418 7645609 -235018744 + AluSp SINE Alu 99 312 -1 1758 173 3 10 chr1 7645763 7646064 -235018289 - AluJb SINE Alu -13 299 1 1405 189 111 4 chr1 7647026 7647296 -235017057 + AluJo SINE Alu 1 299 -13 2151 100 10 3 chr1 7648111 7648401 -235015952 - AluSq SINE Alu -13 300 9 23 33 0 0 chr1 7649179 7649209 -235015144 + AT_rich Low_complexity Low_complexity 1 30 0 189 74 0 0 chr1 7649667 7649694 -235014659 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 101 0 0 chr1 7652856 7652935 -235011418 + AT_rich Low_complexity Low_complexity 1 79 0 1932 165 0 0 chr1 7653941 7654250 -235010103 - AluSx SINE Alu -3 309 1 2026 127 3 7 chr1 7654257 7654557 -235009796 - AluY SINE Alu -10 301 3 584 274 11 22 chr1 7654640 7654819 -235009534 + MIR SINE MIR 85 261 -1 2248 93 3 22 chr1 7654852 7655163 -235009190 - AluSg SINE Alu -5 305 1 1167 178 5 10 chr1 7655404 7655612 -235008741 + AluJb SINE Alu 3 209 -103 21 36 0 0 chr1 7655722 7655750 -235008603 + AT_rich Low_complexity Low_complexity 1 28 0 2230 121 3 0 chr1 7656229 7656535 -235007818 - AluSx SINE Alu -5 307 1 1026 98 23 0 chr1 7656535 7656668 -235007685 - AluSq/x SINE Alu -177 136 1 1277 206 4 8 chr1 7656951 7657203 -235007150 - AluJo SINE Alu -13 299 49 709 353 70 26 chr1 7657203 7657930 -235006423 + L2 LINE L2 2475 3234 -38 303 153 141 59 chr1 7658244 7658329 -235006024 - MIR SINE MIR 0 262 171 550 311 34 0 chr1 7658432 7658609 -235005744 - MIR SINE MIR -78 184 2 2134 111 0 7 chr1 7659923 7660231 -235004122 + AluSx SINE Alu 1 306 0 920 191 16 31 chr1 7660380 7660574 -235003779 - MER20 DNA MER1_type 0 219 29 2285 93 0 3 chr1 7660692 7660982 -235003371 - AluSg SINE Alu -21 289 1 604 186 7 57 chr1 7660982 7661122 -235003231 + MER58B DNA MER1_type 204 336 -5 242 264 97 0 chr1 7661713 7661785 -235002568 + MIR SINE MIR 38 116 -92 2368 101 0 0 chr1 7661794 7662102 -235002251 - AluSx SINE Alu -4 308 1 657 216 157 33 chr1 7662105 7662258 -235002095 - AluSg/x SINE Alu -19 293 122 341 219 0 14 chr1 7662288 7662361 -235001992 - MER5A DNA MER1_type -1 188 117 2692 235 50 44 chr1 7662373 7663234 -235001119 + L1MCb LINE L1 13 878 -5167 264 30 0 0 chr1 7663234 7663267 -235001086 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2257 92 3 3 chr1 7663269 7663562 -235000791 - AluY SINE Alu -18 293 1 2938 162 95 67 chr1 7663566 7664200 -235000153 + L1MC2 LINE L1 5595 6210 -134 195 100 0 0 chr1 7664200 7664230 -235000123 + (TG)n Simple_repeat Simple_repeat 1 30 0 2938 162 95 67 chr1 7664230 7664265 -235000088 + L1MC2 LINE L1 6210 6243 -101 2701 38 0 13 chr1 7664265 7664580 -234999773 - AluY SINE Alu 0 311 1 2938 162 95 67 chr1 7664580 7664626 -234999727 + L1MC2 LINE L1 6243 6331 -13 475 262 74 0 chr1 7664652 7664774 -234999579 - MER5A DNA MER1_type -58 131 1 1539 187 257 22 chr1 7664835 7665273 -234999080 + MLT1F LTR MaLR 1 502 -3 1878 93 43 25 chr1 7665288 7665593 -234998760 + AluSq SINE Alu 1 310 0 555 258 74 0 chr1 7666020 7666183 -234998170 + MIR SINE MIR 87 261 -1 188 337 171 21 chr1 7666185 7666378 -234997975 + L2 LINE L2 2838 3059 -213 23 0 0 0 chr1 7666416 7666439 -234997914 + AT_rich Low_complexity Low_complexity 1 23 0 271 270 0 60 chr1 7666467 7666567 -234997786 - MIR SINE MIR 0 262 169 22 0 0 0 chr1 7666759 7666781 -234997572 + AT_rich Low_complexity Low_complexity 1 22 0 513 265 129 34 chr1 7666813 7667037 -234997316 - L1MC4a LINE L1 -1791 6017 5757 2309 122 135 3 chr1 7667037 7667415 -234996938 + MSTA LTR MaLR 1 428 0 513 265 129 34 chr1 7667415 7667484 -234996869 - L1MC4a LINE L1 -2051 5757 5696 2344 70 0 3 chr1 7667648 7667966 -234996387 - AluY SINE Alu 0 317 1 207 0 0 0 chr1 7668312 7668335 -234996018 + (A)n Simple_repeat Simple_repeat 1 23 0 901 118 0 59 chr1 7669043 7669195 -234995158 - FLAM_C SINE Alu 0 143 1 830 120 0 0 chr1 7669730 7669855 -234994498 - AluSg/x SINE Alu 0 312 188 669 124 0 0 chr1 7669855 7669944 -234994409 - AluJ/FLAM SINE Alu -222 90 2 183 304 51 13 chr1 7670017 7670096 -234994257 + L2 LINE L2 3169 3250 -22 382 200 35 12 chr1 7670100 7670185 -234994168 - MIR SINE MIR -12 250 164 615 278 124 51 chr1 7670497 7670925 -234993428 - LTR41 LTR ERVL -6 767 309 980 166 29 6 chr1 7670962 7671137 -234993216 - LTR41 LTR ERVL -594 179 1 250 280 220 0 chr1 7671150 7671268 -234993085 + L2 LINE L2 2427 2570 -744 45 19 0 0 chr1 7671300 7671352 -234993001 + AT_rich Low_complexity Low_complexity 1 52 0 221 234 8 153 chr1 7671395 7671519 -234992834 + L2 LINE L2 2916 3021 -251 5011 151 61 15 chr1 7671637 7672684 -234991669 - Tigger3b DNA MER2_type -57 1174 3 263 271 59 93 chr1 7672718 7672836 -234991517 + L2 LINE L2 3154 3267 -5 2215 135 10 56 chr1 7672842 7673235 -234991118 + THE1C LTR MaLR 1 375 0 1718 119 0 140 chr1 7674010 7674346 -234990007 + AluJb SINE Alu 13 301 -11 1030 176 0 12 chr1 7674573 7674743 -234989610 + AluJo SINE Alu 1 168 -144 1621 134 94 29 chr1 7674745 7675020 -234989333 - AluSx SINE Alu -19 293 1 783 255 98 57 chr1 7675144 7675512 -234988841 + L2 LINE L2 2930 3312 -1 2119 169 42 0 chr1 7676517 7676877 -234987476 + THE1C LTR MaLR 1 375 0 1657 189 17 0 chr1 7677247 7677543 -234986810 + AluJo SINE Alu 1 301 -11 276 340 0 10 chr1 7677829 7677932 -234986421 + MLT1K LTR MaLR 185 286 -302 988 157 45 0 chr1 7677935 7678113 -234986240 - MER47A DNA MER2_type -177 189 4 189 194 75 32 chr1 7678196 7678289 -234986064 - L2 LINE L2 -358 2914 2818 349 143 13 13 chr1 7678307 7678384 -234985969 + GA-rich Low_complexity Low_complexity 1 77 0 2356 59 35 0 chr1 7678472 7678760 -234985593 - AluY SINE Alu -13 298 1 2158 100 0 21 chr1 7679246 7679537 -234984816 - AluSx SINE Alu -27 285 1 430 331 24 24 chr1 7679573 7679742 -234984611 - MIR SINE MIR -58 204 36 647 224 22 92 chr1 7680431 7680659 -234983694 - MIR SINE MIR 0 262 51 487 311 104 65 chr1 7680730 7681329 -234983024 - L2 LINE L2 0 3313 2667 2008 152 3 0 chr1 7681329 7681632 -234982721 + AluSx SINE Alu 1 304 -8 487 311 104 65 chr1 7681632 7681686 -234982667 - L2 LINE L2 -646 2667 2617 221 231 115 0 chr1 7681688 7681740 -234982613 + L2 LINE L2 3256 3313 0 281 282 13 0 chr1 7682736 7682814 -234981539 - MIR SINE MIR -21 241 163 544 197 249 28 chr1 7683441 7683654 -234980699 - MIR SINE MIR 0 262 3 21 0 0 0 chr1 7684468 7684489 -234979864 + AT_rich Low_complexity Low_complexity 1 21 0 493 196 181 7 chr1 7686892 7687030 -234977323 - MER69A DNA AcHobo -15 162 1 946 134 15 0 chr1 7687242 7687376 -234976977 + AluJo SINE Alu 1 136 -176 807 191 7 15 chr1 7687473 7687609 -234976744 + AluJo SINE Alu 1 135 -177 2219 113 10 3 chr1 7688269 7688571 -234975782 + AluSq SINE Alu 1 304 -9 2454 132 58 127 chr1 7689273 7689551 -234974802 + L1MA8 LINE L1 5711 6007 -284 1993 114 14 3 chr1 7689551 7689840 -234974513 - AluSg SINE Alu -18 292 1 1560 135 36 32 chr1 7689847 7690099 -234974254 - AluJo SINE Alu -11 301 49 2454 132 58 127 chr1 7690099 7690433 -234973920 + L1MA8 LINE L1 6013 6288 -3 692 154 9 0 chr1 7690482 7690592 -234973761 + FLAM_A SINE Alu 28 138 -4 351 0 0 0 chr1 7691298 7691337 -234973016 + (CA)n Simple_repeat Simple_repeat 2 40 0 2454 73 0 3 chr1 7691485 7691786 -234972567 - AluSq SINE Alu -13 300 1 259 167 0 0 chr1 7692077 7692125 -234972228 - Alu SINE Alu -4 298 251 696 332 23 0 chr1 7692314 7692570 -234971783 - MIR SINE MIR 0 262 1 2333 99 0 13 chr1 7693095 7693407 -234970946 + AluSp SINE Alu 1 308 -5 279 296 34 126 chr1 7693550 7693844 -234970509 + L2 LINE L2 3005 3271 -1 2033 138 0 7 chr1 7694810 7695115 -234969238 + AluSx SINE Alu 1 303 -9 2349 81 0 7 chr1 7695118 7695415 -234968938 + AluSc SINE Alu 1 295 -14 215 294 141 0 chr1 7696028 7696113 -234968240 - L2 LINE L2 -207 3065 2969 3947 181 48 19 chr1 7696180 7696986 -234967367 + L1MB8 LINE L1 5349 6178 0 2070 131 10 13 chr1 7696996 7697132 -234967221 + AluSq SINE Alu 1 136 -177 2321 89 0 0 chr1 7697132 7697423 -234966930 + AluSc SINE Alu 2 292 -17 2070 131 10 13 chr1 7697423 7697600 -234966753 + AluSq SINE Alu 136 313 0 2066 135 3 22 chr1 7697718 7698036 -234966317 + AluSx SINE Alu 1 312 0 186 243 103 96 chr1 7698593 7698729 -234965624 - L2 LINE L2 -1842 1472 1336 1745 183 10 16 chr1 7698780 7699092 -234965261 + AluJb SINE Alu 1 310 -2 23 0 0 0 chr1 7699136 7699159 -234965194 + AT_rich Low_complexity Low_complexity 1 23 0 2000 110 0 27 chr1 7699159 7699459 -234964894 + AluSx SINE Alu 21 312 0 1034 213 56 0 chr1 7699899 7700096 -234964257 + MER3 DNA MER1_type 2 209 0 782 211 60 22 chr1 7700404 7700589 -234963764 + MER58A DNA MER1_type 1 192 -32 1618 167 24 17 chr1 7700950 7701238 -234963115 - AluJo SINE Alu -22 290 1 2249 118 0 3 chr1 7701244 7701550 -234962803 - AluSx SINE Alu -7 305 1 28 0 0 0 chr1 7701761 7701789 -234962564 + AT_rich Low_complexity Low_complexity 1 28 0 271 275 296 16 chr1 7701926 7702115 -234962238 + MIR SINE MIR 12 253 -9 756 323 33 25 chr1 7702148 7702541 -234961812 + L1MC4a LINE L1 5548 5943 -1865 2125 111 10 7 chr1 7702702 7702999 -234961354 + AluSx SINE Alu 1 298 -14 2482 74 0 0 chr1 7703089 7703400 -234960953 + AluY SINE Alu 1 311 0 276 189 63 21 chr1 7703524 7703619 -234960734 + L1ME4a LINE L1 5916 6014 -107 211 222 0 0 chr1 7703620 7703656 -234960697 + L2 LINE L2 3199 3234 -79 2088 127 3 16 chr1 7703953 7704261 -234960092 + AluSx SINE Alu 1 304 -8 1923 150 17 3 chr1 7704267 7704567 -234959786 + AluSq SINE Alu 1 304 -9 799 176 23 0 chr1 7704873 7705004 -234959349 + AluJb SINE Alu 2 135 -177 2168 108 0 0 chr1 7705004 7705292 -234959061 + AluSg SINE Alu 1 288 -22 2414 72 3 3 chr1 7705808 7706114 -234958239 - AluSp SINE Alu -7 306 1 2615 65 7 0 chr1 7706412 7706719 -234957634 - AluSc SINE Alu 0 309 1 1583 192 0 38 chr1 7706750 7707063 -234957290 + AluJo SINE Alu 1 301 -11 914 266 5 5 chr1 7707248 7707455 -234956898 - MIR SINE MIR -54 208 2 1744 183 3 0 chr1 7707762 7708057 -234956296 - AluSx SINE Alu -16 296 1 1789 138 6 55 chr1 7708171 7708497 -234955856 - AluJb SINE Alu -2 310 1 2430 70 3 7 chr1 7708994 7709295 -234955058 - AluY SINE Alu -11 300 1 239 281 123 9 chr1 7709407 7709521 -234954832 + MIR SINE MIR 74 200 -62 1513 169 4 0 chr1 7710018 7710260 -234954093 + AluJb SINE Alu 4 246 -66 1344 139 15 0 chr1 7710313 7710514 -234953839 - AluSg/x SINE Alu -15 297 94 289 81 0 0 chr1 7711077 7711114 -234953239 - Alu SINE Alu -261 41 5 1138 45 0 8 chr1 7711219 7711352 -234953001 + AluSg SINE Alu 3 134 -176 2166 104 10 3 chr1 7711352 7711650 -234952703 + AluSx SINE Alu 1 300 -12 372 257 0 0 chr1 7711650 7711720 -234952633 + L2 LINE L2 3197 3266 -47 1169 139 17 6 chr1 7711883 7712063 -234952290 + AluSx SINE Alu 1 182 -130 336 297 27 18 chr1 7712093 7712204 -234952149 + MIR SINE MIR 27 138 -70 1655 156 31 59 chr1 7712911 7713047 -234951306 + AluJo SINE Alu 1 139 -173 2162 116 0 7 chr1 7713047 7713341 -234951012 + AluSc SINE Alu 1 292 -17 1655 156 31 59 chr1 7713341 7713524 -234950829 + AluJo SINE Alu 139 311 -1 606 286 82 11 chr1 7713526 7713708 -234950645 + MIR SINE MIR 57 251 -11 2450 246 74 50 chr1 7713983 7714595 -234949758 + L2 LINE L2 1732 2328 -986 2170 122 0 0 chr1 7714595 7714891 -234949462 + AluSx SINE Alu 1 296 -16 2450 246 74 50 chr1 7714891 7715023 -234949330 + L2 LINE L2 2328 2455 -859 1776 180 0 3 chr1 7715023 7715312 -234949041 + AluJb SINE Alu 1 288 -24 2450 246 74 50 chr1 7715312 7715524 -234948829 + L2 LINE L2 2455 2712 -602 549 174 51 0 chr1 7715527 7715625 -234948728 + AluJo SINE Alu 34 136 -176 374 172 86 11 chr1 7715646 7715739 -234948614 + L2 LINE L2 2702 2801 -513 1033 159 30 25 chr1 7715871 7716072 -234948281 + MLT1C LTR MaLR 266 467 0 1127 272 72 59 chr1 7716072 7716528 -234947825 + L2 LINE L2 2848 3309 -4 2260 103 3 0 chr1 7717603 7717893 -234946460 - AluSq SINE Alu -22 291 1 240 279 54 23 chr1 7717960 7718089 -234946264 + L2 LINE L2 2538 2670 -644 884 280 94 21 chr1 7718928 7719339 -234945014 + L2 LINE L2 2664 3105 -208 2169 112 0 7 chr1 7719518 7719821 -234944532 + AluSx SINE Alu 1 301 -11 1559 118 0 0 chr1 7719870 7720081 -234944272 + AluJb SINE Alu 84 294 -18 24 53 0 0 chr1 7720261 7720299 -234944054 + AT_rich Low_complexity Low_complexity 1 38 0 2331 93 0 3 chr1 7720334 7720634 -234943719 - AluSg SINE Alu -11 299 1 268 334 100 55 chr1 7720699 7721028 -234943325 - L2 LINE L2 -13 3259 2916 938 126 0 15 chr1 7721134 7721269 -234943084 + AluJo SINE Alu 1 133 -169 38 0 0 0 chr1 7721269 7721307 -234943046 + AT_rich Low_complexity Low_complexity 1 38 0 1970 142 0 7 chr1 7722585 7722867 -234941486 - AluSq SINE Alu -33 280 1 293 326 68 30 chr1 7723342 7723474 -234940879 + L2 LINE L2 3133 3269 -3 968 169 34 11 chr1 7723921 7724099 -234940254 + AluJo SINE Alu 131 312 0 2497 87 0 0 chr1 7724856 7725167 -234939186 + AluSx SINE Alu 1 311 -1 1912 119 11 14 chr1 7725782 7726060 -234938293 + AluSx SINE Alu 19 295 -17 1864 56 158 11 chr1 7726097 7726363 -234937990 + AluY SINE Alu 1 305 -6 695 197 0 0 chr1 7726596 7726745 -234937608 + FLAM_C SINE Alu 1 149 0 253 220 17 34 chr1 7726747 7726806 -234937547 + AluJ/F(R)AM SINE Alu 137 194 -108 997 201 0 16 chr1 7726828 7727012 -234937341 - AluJb SINE Alu -46 266 86 2182 94 7 0 chr1 7727028 7727305 -234937048 - AluSg SINE Alu -31 279 1 660 188 8 8 chr1 7727311 7727428 -234936925 - FLAM_A SINE Alu -10 132 16 2490 84 3 0 chr1 7727682 7727990 -234936363 + AluSp SINE Alu 1 309 -4 461 130 130 11 chr1 7728555 7728647 -234935706 - HY1 scRNA scRNA -2 110 8 1102 197 60 77 chr1 7729073 7729372 -234934981 + AluSx SINE Alu 2 295 -7 926 154 0 0 chr1 7729958 7730094 -234934259 + AluJo SINE Alu 1 136 -176 2135 111 0 19 chr1 7730094 7730410 -234933943 + AluSx SINE Alu 1 310 -2 2423 93 0 0 chr1 7730671 7730973 -234933380 - AluSx SINE Alu -10 302 1 2230 109 10 0 chr1 7730973 7731275 -234933078 - AluSq SINE Alu -8 305 1 32 0 0 0 chr1 7731502 7731534 -234932819 + AT_rich Low_complexity Low_complexity 1 32 0 1000 140 0 67 chr1 7731535 7731639 -234932714 + FRAM SINE Alu 1 83 -229 1455 58 85 58 chr1 7731639 7731777 -234932576 - MER30 DNA MER1_type 0 230 82 2297 104 0 19 chr1 7731777 7732095 -234932258 - AluSx SINE Alu 0 312 1 1455 58 85 58 chr1 7732095 7732180 -234932173 - MER30 DNA MER1_type -148 82 1 1000 140 0 67 chr1 7732180 7732254 -234932099 + FRAM SINE Alu 83 160 -16 270 173 49 25 chr1 7732269 7732350 -234932003 + L1MB7 LINE L1 6100 6182 -2 293 213 0 0 chr1 7732452 7732513 -234931840 + L1MC/D LINE L1 5376 5436 -2372 780 145 123 7 chr1 7732518 7732656 -234931697 + FRAM SINE Alu 1 154 -12 2110 118 7 0 chr1 7732665 7732952 -234931401 + AluSx SINE Alu 1 289 -23 2004 148 0 3 chr1 7732958 7733249 -234931104 + AluJb SINE Alu 1 290 -22 2372 94 3 0 chr1 7733252 7733549 -234930804 - AluSp SINE Alu -15 298 1 415 299 159 9 chr1 7733588 7733909 -234930444 + L1MC/D LINE L1 5443 5811 -1997 27 0 0 0 chr1 7734056 7734083 -234930270 + AT_rich Low_complexity Low_complexity 1 27 0 210 324 29 7 chr1 7734437 7734576 -234929777 + L2 LINE L2 2918 3059 -213 29 28 0 0 chr1 7735030 7735066 -234929287 + AT_rich Low_complexity Low_complexity 1 36 0 2191 97 27 10 chr1 7735175 7735473 -234928880 + AluSc SINE Alu 1 303 -6 1588 163 80 7 chr1 7735566 7735842 -234928511 - AluJb SINE Alu -16 296 1 1483 278 84 8 chr1 7736432 7736907 -234927446 + MLT1J LTR MaLR 1 511 0 1156 115 35 11 chr1 7736977 7737151 -234927202 - AluSg/x SINE Alu 0 310 133 1907 162 0 14 chr1 7737211 7737347 -234927006 + AluSq SINE Alu 1 137 -176 2089 135 3 3 chr1 7737347 7737658 -234926695 + AluSq SINE Alu 1 311 -2 1907 162 0 14 chr1 7737658 7737817 -234926536 + AluSq SINE Alu 137 292 -21 2352 110 3 0 chr1 7737822 7738131 -234926222 - AluSq SINE Alu -3 310 1 1741 124 51 7 chr1 7738227 7738521 -234925832 + AluSx SINE Alu 1 306 0 190 267 188 30 chr1 7738601 7738702 -234925651 - L2 LINE L2 0 3313 3197 1846 162 0 7 chr1 7739035 7739332 -234925021 - AluJo SINE Alu -17 295 1 975 168 0 23 chr1 7739976 7740149 -234924204 + AluJb SINE Alu 137 305 -7 864 209 37 37 chr1 7740423 7740638 -234923715 - MIR SINE MIR 0 262 48 2498 85 0 3 chr1 7740834 7741139 -234923214 + AluY SINE Alu 1 304 -7 432 229 100 53 chr1 7741521 7741691 -234922662 + MER104 DNA MER2_type 1 178 -2 2047 105 22 0 chr1 7741957 7742284 -234922069 - AluSx SINE Alu 0 333 1 42 0 0 19 chr1 7742289 7742310 -234922043 + AT_rich Low_complexity Low_complexity 1 21 -31 1896 167 0 3 chr1 7742310 7742597 -234921756 + AluJb SINE Alu 3 288 -24 42 0 0 19 chr1 7742597 7742628 -234921725 + AT_rich Low_complexity Low_complexity 21 52 0 200 200 25 0 chr1 7742875 7742915 -234921438 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 1818 158 17 20 chr1 7743307 7743599 -234920754 + AluJo SINE Alu 1 291 -21 2168 122 3 0 chr1 7744348 7744634 -234919719 + AluSx SINE Alu 2 288 -24 2226 114 3 3 chr1 7745589 7745897 -234918456 - AluSx SINE Alu -4 308 1 327 85 0 0 chr1 7747812 7747859 -234916494 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 92 0 0 chr1 7749212 7749277 -234915076 + GC_rich Low_complexity Low_complexity 1 65 0 273 57 0 0 chr1 7749796 7749831 -234914522 + (T)n Simple_repeat Simple_repeat 1 35 0 30 45 0 0 chr1 7750017 7750061 -234914292 + GC_rich Low_complexity Low_complexity 1 44 0 2536 60 3 0 chr1 7750875 7751173 -234913180 - AluSp SINE Alu -14 299 1 1740 119 0 0 chr1 7751528 7751763 -234912590 - AluSg/x SINE Alu 0 312 78 259 256 106 81 chr1 7752138 7752231 -234912122 - MIR SINE MIR -13 249 149 2454 76 10 0 chr1 7752231 7752534 -234911819 - AluSp SINE Alu -7 306 1 259 256 106 81 chr1 7752534 7752600 -234911753 - MIR SINE MIR -113 149 86 24 32 0 0 chr1 7752962 7752993 -234911360 + AT_rich Low_complexity Low_complexity 1 31 0 1403 166 4 17 chr1 7752994 7753229 -234911124 + AluJb SINE Alu 67 298 -14 23 33 0 0 chr1 7753584 7753614 -234910739 + AT_rich Low_complexity Low_complexity 1 30 0 2294 99 3 0 chr1 7754259 7754553 -234909800 + AluSq SINE Alu 1 295 -18 261 57 0 0 chr1 7755372 7755407 -234908946 + (A)n Simple_repeat Simple_repeat 1 35 0 2298 93 3 3 chr1 7755589 7755890 -234908463 + AluSx SINE Alu 1 301 -11 750 138 32 0 chr1 7755939 7756062 -234908291 + L1MC2 LINE L1 5727 5853 -480 774 154 0 0 chr1 7756063 7756186 -234908167 + AluJb SINE Alu 2 124 -188 25 0 0 0 chr1 7756197 7756222 -234908131 + AT_rich Low_complexity Low_complexity 1 25 0 1382 144 20 89 chr1 7756222 7756514 -234907839 + L1MC2 LINE L1 5839 6110 -234 1050 110 6 37 chr1 7756515 7756678 -234907675 + FRAM SINE Alu 1 158 -18 2075 118 17 3 chr1 7756678 7756965 -234907388 + AluSx SINE Alu 1 291 -21 2479 68 0 7 chr1 7756967 7757277 -234907076 + AluSg1 SINE Alu 1 308 -1 952 177 48 0 chr1 7757277 7757463 -234906890 + L1MC2 LINE L1 6137 6331 -13 2117 78 7 68 chr1 7757463 7757770 -234906583 + AluSq SINE Alu 1 288 -25 1173 164 53 70 chr1 7758406 7758541 -234905812 - MER44D DNA MER2_type -1886 605 469 2325 101 0 19 chr1 7758541 7758857 -234905496 + AluSg SINE Alu 1 310 0 1173 164 53 70 chr1 7758857 7758900 -234905453 - MER44D DNA MER2_type -2022 469 427 1897 159 0 3 chr1 7758900 7759190 -234905163 + AluJb SINE Alu 5 293 -19 1173 164 53 70 chr1 7759190 7759216 -234905137 - MER44D DNA MER2_type -2064 427 402 1721 141 26 49 chr1 7759216 7759359 -234904994 + AluJo SINE Alu 1 146 -166 1917 126 3 18 chr1 7759359 7759664 -234904689 + AluSx SINE Alu 1 301 0 1721 141 26 49 chr1 7759664 7759824 -234904529 + AluJo SINE Alu 146 298 -14 1173 164 53 70 chr1 7759824 7759958 -234904395 - MER44D DNA MER2_type -2089 402 1 1936 144 10 0 chr1 7760015 7760307 -234904046 + AluSx SINE Alu 16 310 -2 1119 162 6 6 chr1 7760307 7760486 -234903867 + AluJb SINE Alu 134 312 0 2185 100 7 20 chr1 7760655 7760956 -234903397 + AluSx SINE Alu 1 297 -15 2346 66 0 3 chr1 7761065 7761352 -234903001 + AluY SINE Alu 18 303 -8 2077 275 43 41 chr1 7761499 7762183 -234902170 + L2 LINE L2 989 1677 -1637 2353 111 0 0 chr1 7762183 7762490 -234901863 + AluSq SINE Alu 1 307 -6 2077 275 43 41 chr1 7762490 7762706 -234901647 + L2 LINE L2 1677 1891 -1423 2019 100 28 21 chr1 7762716 7763007 -234901346 + AluSx SINE Alu 10 302 -10 873 144 16 124 chr1 7763420 7763571 -234900782 + L1MCa LINE L1 352 479 -5947 2234 111 3 0 chr1 7763571 7763868 -234900485 - AluSp SINE Alu -15 298 1 873 144 16 124 chr1 7763868 7763910 -234900443 + L1MCa LINE L1 479 524 -5902 666 158 61 0 chr1 7763910 7764024 -234900329 + MER7A DNA MER2_type 1 119 -227 850 184 6 28 chr1 7764026 7764205 -234900148 + AluJb SINE Alu 137 311 -1 1355 202 43 11 chr1 7764248 7764525 -234899828 + AluJb SINE Alu 17 302 -10 245 214 18 0 chr1 7764525 7764581 -234899772 + L1MCa LINE L1 1779 1835 -4591 2321 113 3 0 chr1 7764583 7764892 -234899461 - AluSx SINE Alu -2 310 1 198 0 0 0 chr1 7764898 7764920 -234899433 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1515 197 0 35 chr1 7764921 7765238 -234899115 + AluJb SINE Alu 3 309 0 1972 148 3 3 chr1 7765239 7765543 -234898810 + AluSx SINE Alu 2 305 -7 517 135 10 0 chr1 7765549 7765653 -234898700 + L1MCa LINE L1 1821 1925 -4501 2366 80 0 20 chr1 7765775 7766076 -234898277 + AluY SINE Alu 1 295 -16 1795 127 4 0 chr1 7766328 7766573 -234897780 - AluSx SINE Alu -66 246 1 2024 93 11 7 chr1 7766622 7766901 -234897452 - AluSg SINE Alu -30 280 1 938 179 28 6 chr1 7766904 7767083 -234897270 - AluJb SINE Alu -18 294 112 1632 149 7 53 chr1 7767090 7767224 -234897129 + AluJo SINE Alu 1 117 -195 2315 97 7 0 chr1 7767224 7767522 -234896831 + AluSq SINE Alu 1 300 -13 1632 149 7 53 chr1 7767522 7767668 -234896685 + AluJo SINE Alu 117 268 -44 2235 115 0 13 chr1 7767691 7768003 -234896350 - AluSq SINE Alu -5 308 1 2336 107 7 0 chr1 7768844 7769154 -234895199 + AluSx SINE Alu 1 312 0 229 211 39 0 chr1 7770834 7770886 -234893467 + AluJo SINE Alu 82 135 -167 1628 163 0 80 chr1 7770887 7771025 -234893328 + AluJb SINE Alu 1 148 -164 1906 135 10 10 chr1 7771025 7771313 -234893040 + AluSx SINE Alu 1 288 -24 1179 174 13 129 chr1 7771183 7771500 -234892853 + AluJo SINE Alu 21 300 -12 1628 163 0 80 chr1 7771313 7771500 -234892853 + AluJb SINE Alu 148 300 -12 1790 120 71 0 chr1 7771505 7771772 -234892581 + AluSx SINE Alu 21 306 -6 1667 309 49 48 chr1 7771818 7772040 -234892313 + L2 LINE L2 2086 2306 -1008 2479 98 17 3 chr1 7772040 7772399 -234891954 + THE1B LTR MaLR 1 364 0 1667 309 49 48 chr1 7772399 7772765 -234891588 + L2 LINE L2 2306 2678 -636 2255 102 7 3 chr1 7772765 7773059 -234891294 + AluSx SINE Alu 6 300 -12 1667 309 49 48 chr1 7773059 7773345 -234891008 + L2 LINE L2 2678 2962 -352 612 218 35 0 chr1 7773411 7773553 -234890800 + MLT1A1 LTR MaLR 1 147 -218 826 112 7 63 chr1 7773553 7773684 -234890669 + FRAM SINE Alu 1 30 -146 1093 101 35 0 chr1 7773684 7773853 -234890500 + L1PA8 LINE L1 5995 6169 -3 826 112 7 63 chr1 7773853 7773864 -234890489 + FRAM SINE Alu 30 40 0 1009 169 43 0 chr1 7773892 7774076 -234890277 + MLT1A1 LTR MaLR 170 361 -4 1698 74 0 0 chr1 7774079 7774282 -234890071 - AluY SINE Alu -10 301 99 661 67 11 0 chr1 7774335 7774425 -234889928 - AluY SINE Alu -219 92 2 2268 106 0 17 chr1 7774431 7774595 -234889758 - AluSx SINE Alu -16 296 138 2186 108 7 16 chr1 7774595 7774902 -234889451 - AluSg SINE Alu -6 304 1 2268 106 0 17 chr1 7774902 7775038 -234889315 - AluSx SINE Alu -174 138 1 1095 221 57 57 chr1 7775049 7775371 -234888982 + MLT1C LTR MaLR 77 401 -66 2219 122 0 3 chr1 7775371 7775682 -234888671 - AluSx SINE Alu -2 310 1 1095 221 57 57 chr1 7775682 7775748 -234888605 + MLT1C LTR MaLR 400 465 -2 967 132 11 6 chr1 7776023 7776197 -234888156 + CT-rich Low_complexity Low_complexity 1 175 0 2011 129 31 3 chr1 7776203 7776489 -234887864 - AluSx SINE Alu -18 294 1 278 190 17 0 chr1 7777318 7777376 -234886977 - MIR SINE MIR -137 125 67 1187 246 91 9 chr1 7777395 7777792 -234886561 + MLT1K LTR MaLR 2 479 -109 2055 119 39 0 chr1 7778731 7778894 -234885459 - AluSx SINE Alu -16 296 141 2165 120 3 10 chr1 7778894 7779193 -234885160 - AluSq SINE Alu -16 297 1 180 0 0 0 chr1 7779199 7779219 -234885134 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2055 119 39 0 chr1 7779219 7779333 -234885020 - AluSx SINE Alu -175 137 1 195 42 0 0 chr1 7779685 7779709 -234884644 + (GCTG)n Simple_repeat Simple_repeat 2 25 0 2387 110 0 0 chr1 7780458 7780768 -234883585 + AluSx SINE Alu 1 310 -2 261 0 0 0 chr1 7781235 7781264 -234883089 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2208 110 0 35 chr1 7781718 7782035 -234882318 - AluSx SINE Alu -6 306 1 1351 186 121 53 chr1 7782090 7782375 -234881978 + L1M4 LINE L1 4873 5198 -948 1962 155 3 19 chr1 7782375 7782692 -234881661 + AluJo SINE Alu 1 312 0 1351 186 121 53 chr1 7782692 7782836 -234881517 + L1M4 LINE L1 5198 5331 -815 2339 105 0 3 chr1 7782836 7783140 -234881213 + AluSx SINE Alu 1 303 -9 1356 118 80 55 chr1 7783145 7783382 -234880971 + AluJo SINE Alu 55 297 -15 1959 173 20 32 chr1 7783384 7783420 -234880933 + L1M4 LINE L1 5333 5368 -816 1770 163 51 10 chr1 7783420 7783714 -234880639 + AluJb SINE Alu 1 306 -6 1959 173 20 32 chr1 7783714 7783833 -234880520 + L1M4 LINE L1 5368 5487 -697 2447 89 0 0 chr1 7783833 7784136 -234880217 + AluSx SINE Alu 1 303 -9 1959 173 20 32 chr1 7784136 7784418 -234879935 + L1M4 LINE L1 5487 5766 -418 920 140 15 0 chr1 7784425 7784561 -234879792 + FRAM SINE Alu 18 155 -21 387 0 0 0 chr1 7784581 7784624 -234879729 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 941 158 35 12 chr1 7784646 7784817 -234879536 - FRAM SINE Alu -1 175 1 441 268 116 0 chr1 7784939 7785103 -234879250 - L2 LINE L2 -26 3287 3105 2193 55 45 58 chr1 7785352 7785660 -234878693 + AluY SINE Alu 1 304 -7 1067 201 27 5 chr1 7785660 7785884 -234878469 + L1M3 LINE L1 5441 5669 -511 383 111 10 4 chr1 7785884 7786092 -234878261 + AluJo SINE Alu 1 298 -4 280 206 118 81 chr1 7786860 7786926 -234877427 - Charlie8 DNA MER1_type -2219 198 136 1399 175 68 51 chr1 7786926 7787069 -234877284 + AluJo SINE Alu 1 140 -172 2211 98 0 7 chr1 7787069 7787381 -234876972 + AluSg SINE Alu 1 310 0 1399 175 68 51 chr1 7787381 7787528 -234876825 + AluJo SINE Alu 140 297 -15 280 206 118 81 chr1 7787528 7787597 -234876756 - Charlie8 DNA MER1_type -2281 136 58 323 275 158 35 chr1 7787609 7787722 -234876631 + L1ME1 LINE L1 5970 6112 -54 2156 118 5 68 chr1 7787722 7787898 -234876455 + THE1C LTR MaLR 1 186 -189 2375 93 0 10 chr1 7787898 7788211 -234876142 - AluSx SINE Alu -1 311 2 2156 118 5 68 chr1 7788211 7788434 -234875919 + THE1C LTR MaLR 186 375 0 323 275 158 35 chr1 7788434 7788491 -234875862 + L1ME1 LINE L1 6112 6161 -5 2070 124 0 0 chr1 7788574 7788847 -234875506 - AluSx SINE Alu -19 293 21 205 279 13 63 chr1 7789009 7789088 -234875265 - MIR SINE MIR -108 154 80 723 188 85 6 chr1 7789428 7789593 -234874760 - MER5B DNA MER1_type 0 178 1 722 160 128 19 chr1 7789613 7789769 -234874584 - AluJo SINE Alu -20 292 120 2135 131 0 0 chr1 7789775 7790065 -234874288 + AluSx SINE Alu 1 290 -22 606 221 14 0 chr1 7790647 7790787 -234873566 + ERVL-C1 LTR ERVL 5615 5756 -8 516 208 95 135 chr1 7790789 7790955 -234873398 + MLT2C1 LTR ERVL 3 151 -246 2045 133 14 7 chr1 7790955 7791249 -234873104 - AluSx SINE Alu -16 296 1 516 208 95 135 chr1 7791249 7791409 -234872944 + MLT2C1 LTR ERVL 151 316 -81 853 206 13 0 chr1 7791424 7791579 -234872774 - AluJb SINE Alu -26 286 130 2061 128 7 14 chr1 7791764 7791934 -234872419 - AluSx SINE Alu -7 305 136 2397 95 0 0 chr1 7791934 7792230 -234872123 - AluSg SINE Alu -14 296 1 2061 128 7 14 chr1 7792230 7792355 -234871998 - AluSx SINE Alu -176 136 12 189 0 0 0 chr1 7793934 7793955 -234870398 + (A)n Simple_repeat Simple_repeat 1 21 0 1626 114 63 20 chr1 7793963 7794218 -234870135 + AluSx SINE Alu 35 300 -12 600 135 0 0 chr1 7794239 7794335 -234870018 + FRAM SINE Alu 73 168 -8 619 116 0 0 chr1 7795689 7795775 -234868578 - FLAM_C SINE Alu -37 106 21 1452 194 11 29 chr1 7796381 7796659 -234867694 - AluJo SINE Alu -39 273 1 463 271 97 7 chr1 7796808 7796952 -234867401 + MIR SINE MIR 7 163 -99 844 80 36 0 chr1 7798046 7798158 -234866195 + AluSg/x SINE Alu 193 308 -2 677 164 0 62 chr1 7798730 7798858 -234865495 - FLAM_A SINE Alu -12 121 2 354 235 44 88 chr1 7798923 7799059 -234865294 - MIR SINE MIR -71 191 62 1979 94 94 4 chr1 7799606 7799883 -234864470 - AluY SINE Alu -9 302 1 332 256 231 20 chr1 7800526 7800725 -234863628 - MARNA DNA Mariner -184 402 162 1603 167 42 48 chr1 7800730 7801041 -234863312 - AluJb SINE Alu -3 309 1 2271 123 0 0 chr1 7801612 7801913 -234862440 - AluSx SINE Alu -11 301 1 185 138 0 0 chr1 7804291 7804320 -234860033 - MER5A DNA MER1_type -33 156 128 230 254 0 0 chr1 7804381 7804440 -234859913 - Charlie5 DNA MER1_type -27 2585 2527 2187 119 3 0 chr1 7804441 7804734 -234859619 - AluSx SINE Alu -16 296 3 657 186 120 42 chr1 7805218 7805385 -234858968 + L1MC1 LINE L1 6137 6316 -17 2312 109 0 16 chr1 7806347 7806660 -234857693 + AluSx SINE Alu 4 311 -1 749 96 88 0 chr1 7807195 7807320 -234857033 - MER85 DNA T2_type -3 136 1 189 171 0 0 chr1 7807351 7807386 -234856967 + A-rich Low_complexity Low_complexity 1 35 0 703 114 0 61 chr1 7807842 7807974 -234856379 - FLAM_C SINE Alu -9 124 1 273 177 89 25 chr1 7808487 7808566 -234855787 - L1ME1 LINE L1 -117 6049 5966 1000 50 10 5 chr1 7808670 7808870 -234855483 + AluY SINE Alu 2 302 -9 1967 87 66 35 chr1 7808898 7809046 -234855307 - AluSq SINE Alu -13 300 158 1876 85 143 0 chr1 7809046 7809305 -234855048 - AluY SINE Alu -15 296 1 1967 87 66 35 chr1 7809305 7809445 -234854908 - AluSq SINE Alu -155 158 3 2156 60 19 82 chr1 7809819 7810137 -234854216 + AluSp SINE Alu 1 298 -15 2471 81 0 3 chr1 7813347 7813657 -234850696 + AluSg SINE Alu 2 310 0 1362 182 34 51 chr1 7813679 7813975 -234850378 + AluJo SINE Alu 3 293 -19 2142 108 29 32 chr1 7813978 7814292 -234850061 + AluSq SINE Alu 1 313 0 2322 110 3 0 chr1 7814302 7814603 -234849750 + AluSx SINE Alu 1 302 -10 2457 92 3 0 chr1 7814696 7815002 -234849351 - AluY SINE Alu -4 307 1 2196 112 0 16 chr1 7815025 7815328 -234849025 - AluSg SINE Alu -12 298 1 201 39 0 0 chr1 7815328 7815354 -234848999 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2008 128 0 3 chr1 7815354 7815636 -234848717 - AluSg SINE Alu -29 281 1 33 0 0 0 chr1 7815637 7815670 -234848683 + AT_rich Low_complexity Low_complexity 1 33 0 546 144 0 52 chr1 7815670 7815767 -234848586 - U6 snRNA snRNA -2 105 14 2374 90 3 0 chr1 7816220 7816520 -234847833 - AluSp SINE Alu -12 301 1 2238 117 3 7 chr1 7816777 7817084 -234847269 + AluSx SINE Alu 1 306 -6 2183 104 10 0 chr1 7817645 7817933 -234846420 + AluSq SINE Alu 1 291 -22 274 319 59 89 chr1 7818066 7818235 -234846118 + L3 LINE CR1 402 565 -1012 2083 133 10 10 chr1 7818272 7818574 -234845779 + AluSx SINE Alu 1 302 -10 1087 220 81 23 chr1 7818574 7818833 -234845520 + MLT1A1 LTR MaLR 76 349 -16 366 205 141 0 chr1 7818960 7819038 -234845315 + MER58A DNA MER1_type 1 89 -18 1240 148 9 32 chr1 7819038 7819254 -234845099 - AluJb SINE Alu -15 297 87 639 246 0 0 chr1 7819254 7819388 -234844965 + MER58A DNA MER1_type 87 220 -4 2239 130 0 0 chr1 7819645 7819953 -234844400 - AluSg SINE Alu -2 308 1 1768 172 14 7 chr1 7819953 7820244 -234844109 - AluJo SINE Alu -19 293 1 346 233 25 50 chr1 7820248 7820368 -234843985 - L2 LINE L2 -685 2629 2513 1758 183 3 3 chr1 7820372 7820667 -234843686 + AluJo SINE Alu 1 295 -17 2454 68 14 0 chr1 7820670 7820963 -234843390 + AluSq SINE Alu 1 297 -16 2593 62 7 0 chr1 7820965 7821273 -234843080 + AluY SINE Alu 1 310 -1 1696 191 10 16 chr1 7821311 7821615 -234842738 + AluJb SINE Alu 5 306 -6 354 294 34 14 chr1 7821747 7821893 -234842460 + L3 LINE CR1 1230 1378 -199 215 61 30 0 chr1 7822029 7822062 -234842291 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 143 24 0 chr1 7822062 7822104 -234842249 + (TA)n Simple_repeat Simple_repeat 2 44 0 246 49 0 0 chr1 7822534 7822575 -234841778 - Alu SINE Alu 0 308 268 180 0 0 0 chr1 7822575 7822595 -234841758 + (A)n Simple_repeat Simple_repeat 1 20 0 1513 88 5 0 chr1 7822605 7822809 -234841544 + MER51B LTR ERV1 48 252 -125 2388 92 0 7 chr1 7822814 7823119 -234841234 - AluY SINE Alu -8 303 1 1011 187 0 21 chr1 7823120 7823307 -234841046 + AluJb SINE Alu 115 297 -15 2501 60 7 3 chr1 7823317 7823615 -234840738 - AluSp SINE Alu -14 299 1 827 213 34 78 chr1 7823649 7823917 -234840436 - LTR8 LTR ERV1 -435 256 1 226 227 196 0 chr1 7824017 7824114 -234840239 + MER34 LTR ERV1 370 485 -57 581 251 70 32 chr1 7824272 7824459 -234839894 - L2 LINE L2 0 3313 3120 3549 102 33 38 chr1 7824462 7824988 -234839365 + LTR8 LTR ERV1 1 525 -166 2204 88 29 39 chr1 7824988 7825103 -234839250 + AluSg SINE Alu 1 116 -194 2534 43 33 0 chr1 7825103 7825404 -234838949 + AluY SINE Alu 1 311 0 2204 88 29 39 chr1 7825404 7825596 -234838757 + AluSg SINE Alu 116 305 -5 3549 102 33 38 chr1 7825596 7825650 -234838703 + LTR8 LTR ERV1 525 578 -113 311 143 0 0 chr1 7826852 7826908 -234837445 + LTR8 LTR ERV1 563 618 -73 206 170 0 21 chr1 7826912 7826959 -234837394 + T-rich Low_complexity Low_complexity 3 48 0 2085 143 7 0 chr1 7826962 7827262 -234837091 - AluSx SINE Alu -10 302 1 598 135 0 0 chr1 7827262 7827351 -234837002 + LTR8 LTR ERV1 603 691 0 21 36 0 0 chr1 7827531 7827559 -234836794 + AT_rich Low_complexity Low_complexity 1 28 0 976 87 0 8 chr1 7827581 7827708 -234836645 + AluSp/q SINE Alu 170 295 -18 2058 117 37 7 chr1 7827735 7828034 -234836319 + AluSc SINE Alu 1 308 -1 17779 75 5 7 chr1 7828118 7830549 -234833804 + HERV9 LTR ERV1 5972 8399 0 6166 66 45 21 chr1 7830549 7831356 -234832997 + LTR12 LTR ERV1 1 826 0 1486 129 160 4 chr1 7831359 7831615 -234832738 - AluJo SINE Alu -16 296 1 2145 136 3 0 chr1 7831646 7831954 -234832399 - AluSq SINE Alu -4 309 1 2081 119 0 20 chr1 7831957 7832260 -234832093 - AluSx SINE Alu -15 297 1 501 125 25 0 chr1 7832326 7832406 -234831947 - MER41B LTR ERV1 -221 414 333 1812 146 36 4 chr1 7832408 7832683 -234831670 + AluSx SINE Alu 1 284 -28 183 42 0 0 chr1 7832683 7832707 -234831646 + (CTAAA)n Simple_repeat Simple_repeat 2 25 0 1278 154 0 43 chr1 7832719 7832890 -234831463 - MER41B LTR ERV1 -282 353 193 2260 105 7 0 chr1 7832890 7833184 -234831169 - AluSg SINE Alu -14 296 1 1278 154 0 43 chr1 7833184 7833246 -234831107 - MER41B LTR ERV1 -442 193 130 2121 129 0 41 chr1 7833273 7833445 -234830908 - AluSx SINE Alu -8 304 126 576 0 0 0 chr1 7833445 7833509 -234830844 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 2053 145 3 0 chr1 7833509 7833792 -234830561 - AluSq SINE Alu -29 284 1 2121 129 0 41 chr1 7833792 7833935 -234830418 - AluSx SINE Alu -184 128 1 1348 148 145 17 chr1 7833955 7834245 -234830108 + LTR47A LTR ERVL 124 450 -2 2301 105 0 0 chr1 7834261 7834557 -234829796 - AluSx SINE Alu -16 296 1 876 184 180 39 chr1 7834693 7834949 -234829404 + MER21A LTR ERV1 1 292 -639 * 1224 107 32 0 chr1 7834929 7835116 -234829237 - MER30 DNA MER1_type -37 193 1 * 3133 159 87 29 chr1 7835116 7835482 -234828871 + MER21A LTR ERV1 245 588 -343 2242 93 0 0 chr1 7835482 7835762 -234828591 + AluSx SINE Alu 1 280 -32 224 77 26 0 chr1 7835764 7835803 -234828550 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 3133 159 87 29 chr1 7835803 7836074 -234828279 + MER21A LTR ERV1 588 922 -9 294 95 0 0 chr1 7836626 7836668 -234827685 + (TCTCC)n Simple_repeat Simple_repeat 4 45 0 1632 161 0 16 chr1 7836668 7836917 -234827436 - AluJb SINE Alu -33 279 35 351 273 104 44 chr1 7837050 7837233 -234827120 + L1MEd LINE L1 619 812 -5307 222 62 0 0 chr1 7837233 7837265 -234827088 + (TTAA)n Simple_repeat Simple_repeat 4 35 0 1945 108 71 0 chr1 7837265 7837533 -234826820 - AluSx SINE Alu -25 287 1 183 129 0 0 chr1 7837578 7837609 -234826744 + (TC)n Simple_repeat Simple_repeat 2 32 0 2296 121 0 3 chr1 7837611 7837924 -234826429 - AluSx SINE Alu 0 312 1 314 339 99 0 chr1 7838287 7838479 -234825874 + L1MEd LINE L1 617 827 -5292 2363 122 0 0 chr1 7838513 7838825 -234825528 - AluSx SINE Alu 0 312 1 2673 40 0 3 chr1 7838829 7839133 -234825220 - AluYa5 SINE Alu -7 304 2 2810 22 0 10 chr1 7839136 7839450 -234824903 - AluYa5 SINE Alu 0 311 1 924 145 0 0 chr1 7839453 7839584 -234824769 - AluJo/FLAM SINE Alu -181 131 1 1254 86 0 32 chr1 7840050 7840236 -234824117 - HERVK9 LTR ERVK -4111 1805 1626 * 4176 89 63 17 chr1 7840232 7840870 -234823483 - HERVK9 LTR ERVK -5249 667 1 1353 148 76 8 chr1 7840870 7841120 -234823233 - MER9 LTR ERVK 0 511 245 519 202 0 0 chr1 7841143 7841227 -234823126 - AluJ/FLAM SINE Alu -224 88 5 306 325 57 57 chr1 7841248 7841472 -234822881 + LTR16A LTR ERVL 145 368 -82 835 143 8 0 chr1 7841472 7841598 -234822755 - L1PB2 LINE L1 -3 6148 6022 306 325 57 57 chr1 7841598 7841611 -234822742 + LTR16A LTR ERVL 368 380 -70 2375 71 0 0 chr1 7841611 7841920 -234822433 - AluSc SINE Alu 0 309 1 306 325 57 57 chr1 7841920 7841978 -234822375 + LTR16A LTR ERVL 379 442 -8 388 303 0 0 chr1 7842165 7842274 -234822079 - L2 LINE L2 -481 2833 2725 1078 117 0 25 chr1 7842289 7842452 -234821901 - AluSg/x SINE Alu -17 293 135 628 260 235 6 chr1 7842525 7842887 -234821466 - L2 LINE L2 -703 2611 2167 1500 157 8 16 chr1 7843037 7843285 -234821068 + AluJb SINE Alu 53 298 -14 232 167 0 42 chr1 7843534 7843582 -234820771 + T-rich Low_complexity Low_complexity 2 47 0 191 61 30 0 chr1 7844146 7844179 -234820174 + (CAA)n Simple_repeat Simple_repeat 1 34 0 5859 23 0 0 chr1 7844413 7845029 -234819324 + SVA Other Other 770 1385 -1 380 92 184 0 chr1 7845030 7845106 -234819247 + MER41B LTR ERV1 464 553 -82 186 43 0 0 chr1 7845107 7845130 -234819223 + (A)n Simple_repeat Simple_repeat 1 23 0 2034 122 0 69 chr1 7845249 7845584 -234818769 - AluSx SINE Alu 0 312 1 213 146 0 0 chr1 7845610 7845658 -234818695 + (TG)n Simple_repeat Simple_repeat 1 48 0 686 132 15 73 chr1 7845658 7845794 -234818559 - FRAM SINE Alu -9 167 40 2543 75 0 0 chr1 7846333 7846641 -234817712 - AluSx SINE Alu -4 308 1 1925 139 20 3 chr1 7847116 7847411 -234816942 + AluSx SINE Alu 1 300 -12 2770 167 12 37 chr1 7848096 7848666 -234815687 + L1MB5 LINE L1 5584 6139 -35 2308 89 10 7 chr1 7848673 7848966 -234815387 + AluSq SINE Alu 6 299 -14 2122 118 7 3 chr1 7848979 7849284 -234815069 + AluJb SINE Alu 7 312 0 2281 104 3 0 chr1 7849289 7849588 -234814765 + AluSg SINE Alu 3 302 -8 883 137 0 0 chr1 7849588 7849712 -234814641 + FLAM_C SINE Alu 12 135 -8 1104 89 0 0 chr1 7850033 7850168 -234814185 + AluSq/x SINE Alu 1 135 -177 2323 112 0 13 chr1 7850168 7850482 -234813871 + AluSx SINE Alu 1 310 -2 1013 208 19 102 chr1 7850785 7851107 -234813246 + AluJo SINE Alu 1 295 -7 2328 95 16 0 chr1 7851197 7851501 -234812852 + AluSq SINE Alu 1 309 -4 2193 105 0 0 chr1 7851832 7852109 -234812244 - AluSx SINE Alu -34 278 2 2183 137 0 0 chr1 7852113 7852413 -234811940 - AluSx SINE Alu -8 304 5 812 168 0 0 chr1 7852570 7852695 -234811658 - FLAM_A SINE Alu -8 125 1 2116 138 0 3 chr1 7852749 7853045 -234811308 + AluSx SINE Alu 1 295 -17 585 118 12 0 chr1 7853048 7853133 -234811220 + AluSx SINE Alu 2 87 -225 467 272 54 16 chr1 7853292 7853476 -234810877 + LTR21A LTR ERV1 300 490 -15 2531 179 43 14 chr1 7853477 7854034 -234810319 + HERVFH21 LTR ERV1 6 578 -5951 * 17789 188 20 23 chr1 7854025 7856309 -234808044 + HERVFH21 LTR ERV1 536 2831 -3698 1931 134 4 0 chr1 7856309 7856578 -234807775 - AluSg SINE Alu -40 270 1 17789 188 20 23 chr1 7856578 7858219 -234806134 + HERVFH21 LTR ERV1 2831 4476 -2053 2443 266 28 21 chr1 7858737 7859561 -234804792 + HERVFH21 LTR ERV1 5700 6529 0 484 261 56 17 chr1 7859729 7859909 -234804444 + LTR21A LTR ERV1 300 486 -19 1376 142 110 0 chr1 7859909 7860128 -234804225 + AluSx SINE Alu 70 312 0 2715 42 0 6 chr1 7860179 7860491 -234803862 - AluY SINE Alu -1 310 1 947 143 0 0 chr1 7860585 7860718 -234803635 + FLAM_A SINE Alu 1 133 0 185 309 0 0 chr1 7860759 7860814 -234803539 + L2 LINE L2 2486 2540 -774 622 282 81 69 chr1 7860861 7860934 -234803419 - MLT1L LTR MaLR 0 615 544 2390 105 0 0 chr1 7860934 7861240 -234803113 + AluSg1 SINE Alu 1 306 -3 622 282 81 69 chr1 7861240 7861485 -234802868 - MLT1L LTR MaLR -71 544 288 1979 140 0 45 chr1 7861485 7861654 -234802699 - AluJo SINE Alu -10 302 152 2002 131 46 0 chr1 7861654 7861937 -234802416 - AluSx SINE Alu -15 297 2 1979 140 0 45 chr1 7861937 7862081 -234802272 - AluJo SINE Alu -160 152 3 622 282 81 69 chr1 7862081 7862169 -234802184 - MLT1L LTR MaLR -327 288 203 247 295 0 0 chr1 7862136 7862197 -234802156 - MLT1J LTR MaLR -340 171 111 * 200 111 0 28 chr1 7862333 7862369 -234801984 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 336 302 31 0 chr1 7862369 7862498 -234801855 - L1M4 LINE L1 -2400 3746 3614 599 234 8 0 chr1 7862502 7862626 -234801727 - MER58B DNA MER1_type -6 335 211 523 340 87 4 chr1 7862672 7862913 -234801440 - L1M4 LINE L1 -2539 3607 3347 606 125 40 125 chr1 7862918 7862969 -234801384 - L1MB2 LINE L1 0 6171 6117 2290 104 0 0 chr1 7862969 7863268 -234801085 - AluSq SINE Alu -14 299 1 606 125 40 125 chr1 7863268 7863368 -234800985 - L1MB2 LINE L1 -54 6117 6033 2165 133 0 3 chr1 7863380 7863680 -234800673 - AluSx SINE Alu -13 299 1 1664 177 0 16 chr1 7863680 7863997 -234800356 - L1MB4 LINE L1 -43 6137 5826 2269 109 0 28 chr1 7864067 7864388 -234799965 - AluSx SINE Alu 0 312 1 389 20 20 0 chr1 7864389 7864439 -234799914 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 1898 130 0 60 chr1 7864439 7864739 -234799614 - AluSx SINE Alu -30 282 1 585 143 0 31 chr1 7864744 7864842 -234799511 - AluJo SINE Alu -176 136 42 252 147 0 0 chr1 7864912 7864955 -234799398 + Alu SINE Alu 1 36 -263 2122 224 69 39 chr1 7865058 7865310 -234799043 - L1ME3A LINE L1 -202 5968 5725 1910 157 21 0 chr1 7865310 7865597 -234798756 - AluJb SINE Alu -19 293 1 2122 224 69 39 chr1 7865597 7865811 -234798542 - L1ME3A LINE L1 -445 5725 5519 2494 104 11 16 chr1 7865811 7866177 -234798176 - THE1B LTR MaLR 0 364 1 2122 224 69 39 chr1 7866177 7866500 -234797853 - L1ME3A LINE L1 -651 5519 5157 662 160 48 40 chr1 7866501 7866626 -234797727 - FLAM_C SINE Alu -3 130 5 2491 86 0 0 chr1 7866673 7866976 -234797377 - AluY SINE Alu -8 303 1 2153 144 0 0 chr1 7867011 7867310 -234797043 - AluSx SINE Alu -13 299 1 2170 96 34 7 chr1 7867322 7867615 -234796738 - AluY SINE Alu -10 301 1 231 36 0 0 chr1 7867626 7867654 -234796699 + (A)n Simple_repeat Simple_repeat 1 28 0 1716 181 3 14 chr1 7867737 7868025 -234796328 + AluJb SINE Alu 1 285 -27 305 181 29 0 chr1 7868097 7868173 -234796180 - L1MC3 LINE L1 0 7785 7716 226 164 66 0 chr1 7868206 7868267 -234796086 - L1ME3A LINE L1 -1779 4367 4303 1826 175 21 0 chr1 7868336 7868622 -234795731 + AluJb SINE Alu 2 293 -19 2181 102 0 3 chr1 7868628 7868938 -234795415 + AluSg SINE Alu 1 309 0 950 177 48 0 chr1 7868939 7869125 -234795228 + L1MC2 LINE L1 6137 6331 -13 2130 78 7 68 chr1 7869125 7869432 -234794921 + AluSq SINE Alu 1 288 -25 669 133 74 0 chr1 7870069 7870204 -234794149 - Tigger7 DNA MER2_type -4 2483 2339 2080 89 0 22 chr1 7870204 7870473 -234793880 + AluSg SINE Alu 1 263 -47 258 105 0 0 chr1 7870573 7870611 -234793742 + (A)n Simple_repeat Simple_repeat 1 38 0 1399 128 5 0 chr1 7870965 7871161 -234793192 - AluSx SINE Alu -115 197 1 255 49 0 24 chr1 7871515 7871556 -234792797 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2013 118 29 0 chr1 7871556 7871829 -234792524 - AluSx SINE Alu -4 308 1 394 227 31 0 chr1 7871831 7871928 -234792425 + HERVL40 LTR ERVL 3519 3618 -1912 274 98 0 0 chr1 7871952 7871993 -234792360 - Alu SINE Alu -6 296 256 1940 129 0 48 chr1 7871954 7872116 -234792237 - AluJb SINE Alu -18 294 126 243 0 0 0 chr1 7872116 7872143 -234792210 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2130 121 4 0 chr1 7872143 7872424 -234791929 - AluSg SINE Alu -28 282 1 1940 129 0 48 chr1 7872424 7872569 -234791784 - AluJb SINE Alu -184 128 1 909 141 83 26 chr1 7872863 7873055 -234791298 + MLT1D LTR MaLR 1 203 -302 738 179 46 35 chr1 7873479 7873523 -234790830 + MER61D LTR ERV1 314 356 -145 4083 98 19 20 chr1 7873523 7874118 -234790235 - LTR61 LTR ERV1 0 595 2 738 179 46 35 chr1 7874118 7874256 -234790097 + MER61D LTR ERV1 356 483 -18 1305 152 26 4 chr1 7874297 7874528 -234789825 + MLT1D LTR MaLR 270 505 0 2587 83 0 0 chr1 7875650 7875963 -234788390 + AluSq SINE Alu 1 313 0 1399 128 5 0 chr1 7876328 7876524 -234787829 - AluSx SINE Alu -115 197 1 2361 110 0 0 chr1 7876887 7877197 -234787156 - AluSx SINE Alu -2 310 1 857 118 28 107 chr1 7877619 7877797 -234786556 + AluJb SINE Alu 149 312 0 223 244 282 0 chr1 7878874 7878952 -234785401 + MIR3 SINE MIR 62 161 -47 186 304 144 24 chr1 7878959 7879062 -234785291 - MIR SINE MIR -23 239 117 1930 153 36 0 chr1 7879062 7879363 -234784990 + AluJb SINE Alu 1 312 0 186 304 144 24 chr1 7879363 7879384 -234784969 - MIR SINE MIR -145 117 100 347 189 175 34 chr1 7879409 7879535 -234784818 - MIR SINE MIR -78 130 1 2234 113 20 0 chr1 7880804 7881105 -234783248 - AluSx SINE Alu -5 307 1 2374 110 0 0 chr1 7881567 7881877 -234782476 - AluSx SINE Alu -2 310 1 2176 101 14 10 chr1 7882624 7882921 -234781432 - AluSp SINE Alu -15 298 1 2435 87 0 0 chr1 7883461 7883759 -234780594 + AluSx SINE Alu 1 298 -14 2348 93 0 13 chr1 7884755 7885057 -234779296 - AluSx SINE Alu -14 298 1 294 376 99 3 chr1 7885121 7885298 -234779055 - MIR3 SINE MIR -65 143 2 1920 145 14 3 chr1 7885360 7885657 -234778696 + AluJb SINE Alu 1 300 -12 2470 102 0 0 chr1 7885707 7886020 -234778333 + AluSq SINE Alu 1 313 0 23 0 0 0 chr1 7886574 7886597 -234777756 + AT_rich Low_complexity Low_complexity 1 23 0 2035 150 0 0 chr1 7886600 7886893 -234777460 - AluSx SINE Alu -19 293 1 2195 124 0 0 chr1 7886919 7887210 -234777143 - AluSx SINE Alu -21 291 1 2277 102 0 0 chr1 7887437 7887730 -234776623 - AluSx SINE Alu -19 293 1 2201 136 94 26 chr1 7887731 7888115 -234776238 - L1MC1 LINE L1 -236 6097 5741 1652 169 25 18 chr1 7888115 7888393 -234775960 + AluJb SINE Alu 1 280 -32 348 24 0 0 chr1 7888393 7888434 -234775919 + (CAAT)n Simple_repeat Simple_repeat 4 44 0 2201 136 94 26 chr1 7888434 7888504 -234775849 - L1MC1 LINE L1 -591 5742 5611 4009 104 3 28 chr1 7888504 7888947 -234775406 + MER41A LTR ERV1 1 428 -126 2034 131 24 0 chr1 7888947 7889238 -234775115 - AluSx SINE Alu -14 298 1 4009 104 3 28 chr1 7889238 7889362 -234774991 + MER41A LTR ERV1 428 554 0 475 253 20 0 chr1 7889362 7889508 -234774845 - L1M4 LINE L1 -1567 4579 4431 997 127 0 0 chr1 7889514 7889648 -234774705 - AluSq/x SINE Alu -178 134 1 23 0 0 0 chr1 7889653 7889676 -234774677 + AT_rich Low_complexity Low_complexity 1 23 0 299 239 125 11 chr1 7889734 7889822 -234774531 - MER5C DNA MER1_type -203 121 24 1932 150 7 3 chr1 7889870 7890157 -234774196 + AluJb SINE Alu 3 290 -22 2348 99 0 0 chr1 7890715 7891008 -234773345 + AluSx SINE Alu 2 294 -18 1850 138 29 42 chr1 7891151 7891462 -234772891 + AluSx SINE Alu 1 307 -5 2354 108 0 0 chr1 7892109 7892414 -234771939 - AluSx SINE Alu -7 305 1 1568 186 0 32 chr1 7892440 7892720 -234771633 + AluJo SINE Alu 1 271 -41 2318 106 3 0 chr1 7892938 7893239 -234771114 - AluSq SINE Alu -9 304 3 2376 109 3 0 chr1 7894084 7894387 -234769966 - AluSq SINE Alu -9 304 1 2324 113 3 0 chr1 7894423 7894724 -234769629 + AluSq SINE Alu 1 302 -11 2271 112 3 0 chr1 7894724 7895019 -234769334 + AluSx SINE Alu 1 297 -15 1419 243 82 54 chr1 7895023 7895517 -234768836 + L1M4c LINE L1 816 1295 -5268 423 0 0 0 chr1 7895517 7895564 -234768789 + (CA)n Simple_repeat Simple_repeat 2 48 0 1419 243 82 54 chr1 7895564 7896436 -234767917 + L1M4c LINE L1 1295 2385 -4178 2294 89 13 22 chr1 7896731 7897046 -234767307 + AluSx SINE Alu 1 312 0 1054 298 74 70 chr1 7897884 7898322 -234766031 + L2 LINE L2 779 1214 -2100 1817 164 10 7 chr1 7898322 7898614 -234765739 - AluJb SINE Alu -19 293 1 1054 298 74 70 chr1 7898614 7899010 -234765343 + L2 LINE L2 1214 1620 -1694 2213 129 3 3 chr1 7899010 7899319 -234765034 - AluSc SINE Alu 0 309 1 1054 298 74 70 chr1 7899319 7899466 -234764887 + L2 LINE L2 1620 1765 -1549 2185 128 0 0 chr1 7899735 7900039 -234764314 + AluSx SINE Alu 1 304 -8 2923 155 27 37 chr1 7900040 7900379 -234763974 - L1MB3 LINE L1 -37 6146 5805 2248 112 3 0 chr1 7900379 7900674 -234763679 + AluSx SINE Alu 1 296 -16 2923 155 27 37 chr1 7900674 7900878 -234763475 - L1MB3 LINE L1 -378 5805 5607 2359 82 26 7 chr1 7900878 7901183 -234763170 - AluSx SINE Alu -1 311 1 2923 155 27 37 chr1 7901183 7901237 -234763116 - L1MB3 LINE L1 -576 5607 5554 30 0 0 0 chr1 7901738 7901768 -234762585 + AT_rich Low_complexity Low_complexity 1 30 0 888 129 0 0 chr1 7901772 7901896 -234762457 - FLAM_C SINE Alu -19 124 1 297 324 176 5 chr1 7902069 7902273 -234762080 - MIR SINE MIR -11 251 13 2193 129 7 0 chr1 7902737 7903039 -234761314 - AluSx SINE Alu -8 304 1 1113 256 66 69 chr1 7903127 7903507 -234760846 + L1MEd LINE L1 572 952 -5177 2175 118 3 7 chr1 7903507 7903804 -234760549 + AluSq SINE Alu 1 296 -17 2301 104 0 3 chr1 7903808 7904107 -234760246 + AluSg SINE Alu 2 299 -11 1113 256 66 69 chr1 7904107 7904389 -234759964 + L1MEd LINE L1 955 1236 -4893 192 40 0 0 chr1 7904389 7904414 -234759939 + (TC)n Simple_repeat Simple_repeat 2 26 0 1113 256 66 69 chr1 7904414 7904701 -234759652 + L1MEd LINE L1 1236 1482 -4647 2036 123 23 10 chr1 7904701 7905009 -234759344 + AluSx SINE Alu 1 312 0 1113 256 66 69 chr1 7905009 7905039 -234759314 + L1MEd LINE L1 1482 1511 -4618 2118 124 27 0 chr1 7905275 7905574 -234758779 - AluSx SINE Alu -5 307 1 2255 114 3 0 chr1 7906085 7906384 -234757969 - AluSx SINE Alu -12 300 1 1934 163 0 10 chr1 7906823 7907124 -234757229 - AluJo SINE Alu -14 298 1 2286 81 0 40 chr1 7907166 7907488 -234756865 + AluY SINE Alu 3 311 0 2208 83 17 10 chr1 7907803 7908091 -234756262 - AluSx SINE Alu -22 290 1 922 101 20 0 chr1 7908470 7908618 -234755735 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 1921 137 11 4 chr1 7908618 7908896 -234755457 - AluJb SINE Alu -32 280 1 2422 84 0 7 chr1 7910035 7910343 -234754010 - AluSc SINE Alu -3 306 1 2094 138 17 0 chr1 7910343 7910634 -234753719 - AluSx SINE Alu -16 296 1 943 178 11 11 chr1 7910978 7911152 -234753201 - FRAM SINE Alu -3 173 1 365 274 162 0 chr1 7911375 7911492 -234752861 - MIR SINE MIR -112 150 15 317 353 59 0 chr1 7911506 7911625 -234752728 - L2 LINE L2 -1 3271 3146 235 308 185 10 chr1 7911813 7912008 -234752345 - L2 LINE L2 -384 2930 2702 2275 72 11 7 chr1 7912191 7912543 -234751810 + AluSc SINE Alu 1 353 0 321 256 11 0 chr1 7912570 7912660 -234751693 + L1MC5 LINE L1 5711 5801 -2007 2154 102 17 7 chr1 7912686 7912979 -234751374 - AluSg SINE Alu -14 296 1 2697 48 0 0 chr1 7913125 7913436 -234750917 + AluY SINE Alu 1 311 0 1973 158 7 0 chr1 7913967 7914264 -234750089 + AluJb SINE Alu 1 299 -13 907 226 18 148 chr1 7914269 7914327 -234750026 + L1MC5 LINE L1 6530 6594 -1214 2255 148 0 0 chr1 7914327 7914645 -234749708 - 7SLRNA srpRNA srpRNA -2 318 1 907 226 18 148 chr1 7914645 7914763 -234749590 + L1MC5 LINE L1 6594 6726 -1082 2280 105 0 3 chr1 7914763 7915058 -234749295 - AluSx SINE Alu -18 294 1 907 226 18 148 chr1 7915058 7915155 -234749198 + L1MC5 LINE L1 6726 6834 -974 839 148 0 15 chr1 7915155 7915290 -234749063 + FLAM_C SINE Alu 1 133 0 907 226 18 148 chr1 7915290 7915637 -234748716 + L1MC5 LINE L1 6834 7001 -807 1062 231 162 35 chr1 7915656 7916033 -234748320 - MLT1D LTR MaLR 0 505 81 224 194 0 0 chr1 7916033 7916069 -234748284 + polypyrimidine Low_complexity Low_complexity 3 38 0 462 152 26 53 chr1 7916070 7916221 -234748132 + CT-rich Low_complexity Low_complexity 2 148 0 1556 171 16 49 chr1 7916246 7916551 -234747802 - AluJb SINE Alu -17 295 1 267 141 169 42 chr1 7916551 7916622 -234747731 - MLT1D LTR MaLR -418 87 8 266 200 11 89 chr1 7916657 7916747 -234747606 + L1MC5 LINE L1 7151 7233 -728 228 67 0 0 chr1 7916785 7916815 -234747538 + (CTATT)n Simple_repeat Simple_repeat 3 32 0 320 308 31 31 chr1 7916926 7917056 -234747297 + L2 LINE L2 3184 3313 0 917 285 88 9 chr1 7917064 7917568 -234746785 + L1ME2 LINE L1 5268 5829 -335 2520 71 0 10 chr1 7917597 7917908 -234746445 + AluSc SINE Alu 1 308 -1 1877 164 3 19 chr1 7917936 7918253 -234746100 + AluJb SINE Alu 1 312 0 1506 209 31 48 chr1 7918345 7918699 -234745654 + MER7A DNA MER2_type 1 346 0 1876 124 44 0 chr1 7918765 7919039 -234745314 + AluJb SINE Alu 12 297 -15 564 144 33 39 chr1 7919061 7919242 -234745111 + GA-rich Low_complexity Low_complexity 1 180 0 218 314 14 0 chr1 7919382 7919452 -234744901 + L2 LINE L2 2694 2764 -550 2346 95 7 0 chr1 7919517 7919812 -234744541 - AluSx SINE Alu -15 297 1 273 295 104 49 chr1 7919812 7920025 -234744328 + L2 LINE L2 2754 2981 -291 848 165 0 23 chr1 7920519 7920652 -234743701 + AluJo SINE Alu 5 134 -178 255 281 247 0 chr1 7920699 7920845 -234743508 - MIR SINE MIR -75 187 6 2016 139 3 0 chr1 7921227 7921525 -234742828 + AluJo SINE Alu 1 297 -15 1975 141 0 0 chr1 7921775 7922072 -234742281 - AluJo SINE Alu -13 299 3 2053 131 0 0 chr1 7922104 7922416 -234741937 + AluSx SINE Alu 1 312 0 271 227 0 15 chr1 7923032 7923098 -234741255 - MIR3 SINE MIR -31 177 113 1889 125 38 0 chr1 7924168 7924455 -234739898 + AluSx SINE Alu 1 298 -14 1864 127 30 17 chr1 7925089 7925389 -234738964 - AluJb SINE Alu -8 304 1 407 335 42 47 chr1 7925401 7925637 -234738716 + L1MEc LINE L1 2099 2333 -4063 1695 139 63 33 chr1 7925654 7925957 -234738396 + AluJo SINE Alu 1 312 0 1932 109 4 0 chr1 7925990 7926255 -234738098 - AluSx SINE Alu -46 266 1 550 317 27 57 chr1 7926585 7926954 -234737399 + L2 LINE L2 2331 2688 -626 1658 153 42 14 chr1 7926971 7927258 -234737095 - AluJo SINE Alu -17 295 1 391 49 49 0 chr1 7927261 7927322 -234737031 + (TTTC)n Simple_repeat Simple_repeat 3 66 0 545 319 59 11 chr1 7927371 7927644 -234736709 - MLT1K LTR MaLR 0 588 303 2037 112 53 30 chr1 7927783 7928122 -234736231 - THE1B LTR MaLR -17 347 1 262 329 0 0 chr1 7928122 7928195 -234736158 + L1MEd LINE L1 446 518 -5601 358 323 51 15 chr1 7928198 7928393 -234735960 + L1MC5 LINE L1 7498 7699 -262 2000 118 0 7 chr1 7928400 7928697 -234735656 - AluSc SINE Alu -14 295 1 251 293 65 83 chr1 7929296 7929526 -234734827 - MIR SINE MIR -4 258 35 2169 125 0 0 chr1 7929529 7929841 -234734512 - AluSx SINE Alu 0 312 1 2280 78 3 0 chr1 7929937 7930233 -234734120 + AluY SINE Alu 1 297 -14 2146 97 7 0 chr1 7930234 7930523 -234733830 + AluSq SINE Alu 1 291 -22 1595 204 0 6 chr1 7930523 7930837 -234733516 - AluJo SINE Alu 0 312 1 2648 220 73 31 chr1 7930859 7931557 -234732796 - L1ME1 LINE L1 -36 6130 5394 2111 86 24 10 chr1 7931557 7931847 -234732506 - AluSq SINE Alu -19 294 1 2648 220 73 31 chr1 7931847 7931926 -234732427 - L1ME1 LINE L1 -772 5394 5320 869 189 0 0 chr1 7931927 7932108 -234732245 + FRAM SINE Alu 1 179 0 2052 206 57 66 chr1 7932114 7932167 -234732186 - L1ME1 LINE L1 -813 5333 5281 2247 87 10 0 chr1 7932167 7932467 -234731886 - AluSq SINE Alu -10 303 1 2052 206 57 66 chr1 7932467 7932891 -234731462 - L1ME1 LINE L1 -865 5281 4890 2194 111 0 3 chr1 7932891 7933198 -234731155 + AluSx SINE Alu 1 306 -6 2052 206 57 66 chr1 7933198 7933529 -234730824 - L1ME1 LINE L1 -1256 4890 4557 1479 220 12 30 chr1 7933527 7933931 -234730422 - L1ME1 LINE L1 -2313 3833 3437 * 938 78 117 0 chr1 7933940 7934068 -234730285 - AluSq/x SINE Alu -170 143 1 435 293 0 0 chr1 7934068 7934191 -234730162 - L1ME1 LINE L1 -2690 3456 3334 884 167 13 7 chr1 7934947 7935097 -234729256 + FRAM SINE Alu 1 151 -15 2283 112 0 0 chr1 7935108 7935420 -234728933 + AluSx SINE Alu 1 312 0 351 0 0 0 chr1 7935517 7935556 -234728797 + (TG)n Simple_repeat Simple_repeat 1 39 0 669 232 107 28 chr1 7935642 7935859 -234728494 + MLT1G LTR MaLR 360 503 -2 1973 135 14 0 chr1 7936191 7936488 -234727865 - AluJb SINE Alu -10 302 2 4944 164 15 38 chr1 7936591 7937568 -234726785 + LTR5 LTR ERVK 1 955 -14 2226 108 7 0 chr1 7938347 7938652 -234725701 + AluSx SINE Alu 1 307 -5 1412 163 118 11 chr1 7938851 7939121 -234725232 + AluJo SINE Alu 1 299 -13 433 158 95 120 chr1 7940117 7940275 -234724078 - MER106B DNA MER1_type -10 1049 896 1459 125 103 0 chr1 7940351 7940583 -234723770 + AluSx SINE Alu 57 312 0 1773 132 28 14 chr1 7941036 7941323 -234723030 - AluSx SINE Alu -21 291 1 250 234 0 0 chr1 7941984 7942031 -234722322 - L2 LINE L2 -1 3312 3266 180 282 0 99 chr1 7942415 7942486 -234721867 - MIR SINE MIR -34 228 165 1145 95 24 0 chr1 7942506 7942674 -234721679 - AluSg/x SINE Alu -8 304 133 245 269 30 0 chr1 7943033 7943100 -234721253 - L2 LINE L2 -551 2763 2695 2108 106 10 0 chr1 7943375 7943667 -234720686 - AluSx SINE Alu -17 295 1 1960 145 7 3 chr1 7944225 7944529 -234719824 - AluJb SINE Alu -7 305 1 438 318 63 16 chr1 7944596 7944785 -234719568 + MER20B DNA MER1_type 542 739 -44 2281 101 0 0 chr1 7945117 7945424 -234718929 - AluSq SINE Alu 0 313 7 2354 198 43 19 chr1 7945597 7946137 -234718216 + MER74A LTR ERVL 6 558 0 849 144 0 34 chr1 7946144 7946290 -234718063 + FLAM_C SINE Alu 1 141 -2 2245 104 7 0 chr1 7946513 7946822 -234717531 - AluSx SINE Alu -1 311 1 1957 147 0 10 chr1 7947651 7947964 -234716389 - AluSq SINE Alu -3 310 1 996 90 0 8 chr1 7947968 7948102 -234716251 - AluSq/x SINE Alu -179 133 1 340 312 102 5 chr1 7948531 7948717 -234715636 + MIR3 SINE MIR 2 205 -3 1667 172 26 23 chr1 7950493 7950795 -234713558 - AluJo SINE Alu -9 303 1 1737 140 0 14 chr1 7951095 7951374 -234712979 + AluJb SINE Alu 1 275 -37 582 183 0 0 chr1 7951374 7951489 -234712864 + GA-rich Low_complexity Low_complexity 4 118 0 2861 146 74 40 chr1 7951631 7951863 -234712490 + MER39B LTR ERV1 1 223 -430 1723 100 4 0 chr1 7951863 7952128 -234712225 + AluSx SINE Alu 53 318 0 2861 146 74 40 chr1 7952128 7952499 -234711854 + MER39B LTR ERV1 223 626 -27 407 221 58 0 chr1 7952501 7952605 -234711748 + L2 LINE L2 1328 1437 -1877 395 266 202 45 chr1 7952640 7952952 -234711401 + L2 LINE L2 1621 1981 -1333 911 143 0 0 chr1 7953672 7953798 -234710555 + FLAM_C SINE Alu 1 126 -7 1263 184 148 42 chr1 7954238 7954414 -234709939 + MLT1A2 LTR MaLR 2 158 -216 2159 122 0 0 chr1 7954414 7954725 -234709628 + AluSx SINE Alu 1 311 -1 1263 184 148 42 chr1 7954725 7954885 -234709468 + MLT1A2 LTR MaLR 158 374 0 547 221 10 171 chr1 7954888 7955186 -234709167 + L3 LINE CR1 1313 1562 -15 631 122 0 0 chr1 7955441 7955531 -234708822 - Alu SINE Alu -9 301 212 2146 105 114 21 chr1 7955531 7955864 -234708489 + THE1B LTR MaLR 1 364 0 1564 119 0 0 chr1 7955864 7956082 -234708271 - AluSx SINE Alu -94 218 1 267 315 62 53 chr1 7957367 7957600 -234706753 - MIR SINE MIR -6 256 29 2378 68 0 0 chr1 7958098 7958391 -234705962 + AluY SINE Alu 1 293 -18 794 135 23 23 chr1 7958400 7958533 -234705820 + FLAM_C SINE Alu 1 133 0 2058 114 6 29 chr1 7958602 7958918 -234705435 - AluSx SINE Alu -3 309 1 308 276 69 9 chr1 7958930 7959046 -234705307 + MIR SINE MIR 74 196 -66 300 306 171 5 chr1 7959204 7959420 -234704933 + L2 LINE L2 1918 2169 -1145 301 294 147 54 chr1 7959483 7959687 -234704666 + L1 LINE L1 2970 3192 -2954 820 135 0 15 chr1 7959820 7959953 -234704400 + FLAM_C SINE Alu 13 143 0 2289 97 0 25 chr1 7960027 7960347 -234704006 - AluSx SINE Alu 0 312 1 308 276 69 9 chr1 7960359 7960475 -234703878 + MIR SINE MIR 74 196 -66 383 282 171 5 chr1 7960634 7960850 -234703503 + L2 LINE L2 1918 2169 -1145 746 235 41 101 chr1 7961443 7961830 -234702523 - L2 LINE L2 0 3313 2950 1955 132 0 7 chr1 7962912 7963070 -234701283 - AluSx SINE Alu -18 294 137 2401 71 0 13 chr1 7963070 7963381 -234700972 - AluY SINE Alu -4 307 1 1955 132 0 7 chr1 7963381 7963518 -234700835 - AluSx SINE Alu -175 137 1 1420 119 21 4 chr1 7963523 7963758 -234700595 - L1PA14 LINE L1 0 6161 5923 1858 149 0 10 chr1 7964091 7964399 -234699954 + AluJb SINE Alu 1 305 -7 1179 184 0 26 chr1 7964524 7964758 -234699595 - AluJb SINE Alu 0 312 85 1489 152 17 0 chr1 7964833 7965063 -234699290 - AluSx SINE Alu -78 234 1 760 203 0 0 chr1 7965064 7965192 -234699161 - AluSq/x SINE Alu -184 129 2 1052 232 0 20 chr1 7965196 7965442 -234698911 - MLT1D-int LTR MaLR -1130 241 1 734 169 0 0 chr1 7965444 7965580 -234698773 - MLT1D LTR MaLR 0 505 370 * 949 159 19 0 chr1 7965575 7965732 -234698621 + MSTD LTR MaLR 237 396 0 1796 186 0 0 chr1 7965953 7966265 -234698088 + AluJb SINE Alu 1 312 0 30 0 0 0 chr1 7966708 7966738 -234697615 + AT_rich Low_complexity Low_complexity 1 30 0 554 155 216 0 chr1 7966743 7966840 -234697513 - FLAM_C SINE Alu -24 119 2 389 241 0 0 chr1 7967064 7967147 -234697206 - L2 LINE L2 0 3272 3190 3868 197 65 117 chr1 7967240 7968563 -234695790 - MER52A LTR ERV1 0 1278 25 268 53 26 0 chr1 7968563 7968601 -234695752 + MER52A LTR ERV1 1 39 -1716 323 256 5 85 chr1 7968683 7968776 -234695577 - Charlie7 DNA MER1_type 0 2612 2542 2208 80 7 0 chr1 7968776 7969065 -234695288 - AluY SINE Alu -20 291 1 323 256 5 85 chr1 7969065 7969170 -234695183 - Charlie7 DNA MER1_type -70 2542 2430 1279 157 59 77 chr1 7969404 7969717 -234694636 - AluJo SINE Alu 0 308 1 450 359 69 7 chr1 7969810 7970114 -234694239 + L2 LINE L2 2632 2954 -360 239 231 19 0 chr1 7970213 7970265 -234694088 + L2 LINE L2 3247 3299 -14 250 288 113 38 chr1 7970270 7970430 -234693923 + L2 LINE L2 2233 2404 -910 1034 165 54 66 chr1 7970929 7971171 -234693182 - L1MC3 LINE L1 -1152 6633 6395 581 295 43 5 chr1 7971252 7971459 -234692894 - MIR SINE MIR -28 234 20 2012 149 30 25 chr1 7971895 7972257 -234692096 - THE1B LTR MaLR 0 364 1 1085 224 19 0 chr1 7972369 7972574 -234691779 - AluJb SINE Alu -19 293 85 416 213 4 107 chr1 7972574 7972686 -234691667 - AluSp/q SINE Alu -53 250 173 2557 77 0 3 chr1 7972747 7973058 -234691295 + AluY SINE Alu 1 310 -1 454 267 82 0 chr1 7977122 7977268 -234687085 + MIR SINE MIR 84 241 -21 182 339 25 16 chr1 7977534 7977655 -234686698 + MIR SINE MIR 109 230 -32 654 186 16 31 chr1 7978463 7978592 -234685761 + AluSq/x SINE Alu 1 127 -185 248 233 26 9 chr1 7978592 7978708 -234685645 + (TG)n Simple_repeat Simple_repeat 1 118 0 300 299 35 11 chr1 7978728 7978815 -234685538 + L1MC4 LINE L1 6615 6703 -1339 414 173 18 9 chr1 7978815 7978925 -234685428 + (TG)n Simple_repeat Simple_repeat 1 111 0 241 146 0 0 chr1 7979155 7979196 -234685157 + LTR54 LTR ERV1 402 442 -68 181 252 57 65 chr1 7979638 7979761 -234684592 - L2 LINE L2 -2858 456 335 2558 60 0 3 chr1 7979912 7980210 -234684143 - AluSq SINE Alu -16 297 1 424 132 0 15 chr1 7980236 7980304 -234684049 + AluS SINE Alu 2 68 -250 405 255 100 89 chr1 7980406 7980677 -234683676 + L1MC5 LINE L1 7492 7765 -196 221 94 75 0 chr1 7980679 7980732 -234683621 + (TA)n Simple_repeat Simple_repeat 2 58 0 1949 166 0 3 chr1 7980733 7981029 -234683324 - AluJb SINE Alu -17 295 1 6689 45 40 11 chr1 7981159 7982031 -234682322 + MER11D LTR ERVK 1 897 0 1056 149 18 0 chr1 7982109 7982277 -234682076 - AluJb SINE Alu -5 307 137 451 322 47 0 chr1 7982622 7982771 -234681582 - L1ME LINE L1 -359 5762 5607 2192 107 24 3 chr1 7982867 7983158 -234681195 - AluSx SINE Alu -15 297 1 1704 138 99 18 chr1 7983795 7984078 -234680275 - AluJo SINE Alu -6 306 1 297 115 0 167 chr1 7986036 7986210 -234678143 + (CCCCG)n Simple_repeat Simple_repeat 2 146 0 1683 152 38 3 chr1 7986424 7986714 -234677639 + AluSg SINE Alu 2 301 -9 2930 98 33 15 chr1 7986837 7987294 -234677059 - MER4C LTR ERV1 0 465 1 1871 151 11 0 chr1 7987377 7987661 -234676692 + AluJo SINE Alu 22 308 -4 770 83 9 0 chr1 7987678 7987787 -234676566 + MER83 LTR ERV1 1 110 -338 1651 164 78 55 chr1 7987790 7988173 -234676180 + MER83 LTR ERV1 56 447 -1 2418 95 0 0 chr1 7988280 7988574 -234675779 - AluSq SINE Alu -18 295 2 2384 98 0 0 chr1 7988575 7988870 -234675483 - AluSx SINE Alu -17 295 1 877 145 7 0 chr1 7989258 7989396 -234674957 - LTR23 LTR ERV1 0 437 299 2037 71 12 0 chr1 7989401 7989653 -234674700 - AluSq SINE Alu -10 303 49 1850 171 3 0 chr1 7989754 7990046 -234674307 + AluJb SINE Alu 18 310 -2 1958 94 36 50 chr1 7990080 7990357 -234673996 + AluSq SINE Alu 3 275 -38 467 146 0 11 chr1 7990357 7990446 -234673907 + (GGGA)n Simple_repeat Simple_repeat 4 91 0 3831 132 18 3 chr1 7990460 7991072 -234673281 - MER41B LTR ERV1 -14 621 1 922 133 0 0 chr1 7991072 7991215 -234673138 + L1PB2 LINE L1 6001 6143 -8 1190 185 93 0 chr1 7991227 7991486 -234672867 - LTR23 LTR ERV1 -154 283 1 2226 115 10 13 chr1 7992089 7992402 -234671951 - AluSx SINE Alu 0 312 1 4239 154 15 50 chr1 7992417 7993274 -234671079 - L1MB2 LINE L1 -17 6154 5328 510 111 0 0 chr1 7993366 7993447 -234670906 + LTR24C LTR ERV1 1 81 -554 411 54 0 0 chr1 7993494 7993550 -234670803 + LTR24C LTR ERV1 580 635 0 3599 147 26 36 chr1 7993557 7993577 -234670776 + L1MB5 LINE L1 5117 5136 -1038 1512 187 6 78 chr1 7993577 7993909 -234670444 + AluJb SINE Alu 5 312 0 3599 147 26 36 chr1 7993909 7993976 -234670377 + L1MB5 LINE L1 5136 5202 -972 596 202 73 0 chr1 7993976 7994100 -234670253 + FLAM_A SINE Alu 1 133 0 3599 147 26 36 chr1 7994100 7994415 -234669938 + L1MB5 LINE L1 5202 5519 -655 2049 163 0 0 chr1 7994415 7994715 -234669638 + AluSx SINE Alu 1 300 -12 3599 147 26 36 chr1 7994715 7995048 -234669305 + L1MB5 LINE L1 5519 5839 -335 757 183 0 0 chr1 7995048 7995179 -234669174 + FLAM_A SINE Alu 1 131 -2 3599 147 26 36 chr1 7995179 7995316 -234669037 + L1MB5 LINE L1 5839 5976 -198 754 194 127 18 chr1 7995470 7995701 -234668652 + L1MB5 LINE L1 5920 6174 0 232 179 0 0 chr1 7995711 7995750 -234668603 + Alu SINE Alu 250 288 -13 449 265 60 13 chr1 7995754 7995905 -234668448 - LTR37A LTR ERV1 -268 158 1 3057 116 27 51 chr1 7996015 7996156 -234668197 + MER41E LTR ERV1 1 144 -368 2246 117 0 7 chr1 7996156 7996463 -234667890 + AluSq SINE Alu 2 306 -7 3057 116 27 51 chr1 7996463 7996477 -234667876 + MER41E LTR ERV1 144 157 -355 2540 40 10 3 chr1 7996477 7996778 -234667575 + AluY SINE Alu 1 303 -8 3057 116 27 51 chr1 7996778 7997146 -234667207 + MER41E LTR ERV1 157 512 0 379 279 184 14 chr1 7997400 7997547 -234666806 + MER5A DNA MER1_type 18 189 0 2491 130 46 35 chr1 7997758 7998351 -234666002 - MER4E LTR ERV1 0 766 5 1209 136 45 112 chr1 7998816 7998990 -234665363 - LTR8A LTR ERV1 0 727 578 2168 150 0 6 chr1 7998990 7999304 -234665049 - AluSx SINE Alu 0 312 1 1209 136 45 112 chr1 7999304 7999413 -234664940 - LTR8A LTR ERV1 -149 578 463 1117 185 60 14 chr1 7999413 7999703 -234664650 + LTR19A LTR ERV1 1 357 -129 600 169 0 0 chr1 7999803 7999927 -234664426 + LTR19A-int LTR ERV1 1059 1182 -4404 46057 92 9 9 chr1 7999991 8000036 -234664317 + LTR19A-int LTR ERV1 1178 1222 -6497 2308 79 0 4 chr1 8000036 8000342 -234664011 + AluY SINE Alu 3 307 0 46057 92 9 9 chr1 8000342 8005869 -234658484 + LTR19A-int LTR ERV1 1222 6749 -970 2214 87 14 3 chr1 8005869 8006158 -234658195 + AluSp SINE Alu 5 296 -17 46057 92 9 9 chr1 8006158 8007129 -234657224 + LTR19A-int LTR ERV1 6749 7719 0 1875 151 158 28 chr1 8007129 8007559 -234656794 + LTR19A LTR ERV1 1 486 0 2261 150 57 50 chr1 8007559 8008019 -234656334 - LTR8A LTR ERV1 -264 463 1 2175 154 0 0 chr1 8008122 8008434 -234655919 + AluSx SINE Alu 1 312 0 225 114 29 0 chr1 8008444 8008479 -234655874 + U2 snRNA snRNA 3 38 -150 985 257 62 48 chr1 8008600 8008919 -234655434 + MER110A LTR ERV1 41 354 -114 2323 112 0 16 chr1 8008919 8009232 -234655121 + AluSg SINE Alu 1 308 -2 985 257 62 48 chr1 8009232 8009272 -234655081 + MER110A LTR ERV1 354 392 -76 3850 114 68 49 chr1 8009272 8009950 -234654403 + LTR8 LTR ERV1 1 691 0 985 257 62 48 chr1 8009950 8010009 -234654344 + MER110A LTR ERV1 392 466 -2 265 229 16 0 chr1 8010015 8010076 -234654277 + MER45 DNA AcHobo 1 62 -978 188 250 0 0 chr1 8010089 8010129 -234654224 + MIR SINE MIR 221 260 -2 627 130 52 0 chr1 8010947 8011062 -234653291 - AluSg/x SINE Alu -3 309 189 367 102 0 0 chr1 8011470 8011519 -234652834 + LTR8 LTR ERV1 643 691 0 184 256 47 0 chr1 8011565 8011608 -234652745 + MER5A DNA MER1_type 106 150 -39 28 0 0 0 chr1 8011859 8011887 -234652466 + AT_rich Low_complexity Low_complexity 1 28 0 1084 156 67 45 chr1 8012358 8012582 -234651771 + AluJb SINE Alu 79 307 -5 2219 112 0 26 chr1 8012601 8012905 -234651448 - AluSx SINE Alu -16 296 1 2235 110 7 10 chr1 8013677 8013985 -234650368 + AluSx SINE Alu 1 307 -5 997 147 13 6 chr1 8014463 8014620 -234649733 - AluJo/FRAM SINE Alu -11 301 144 251 154 0 19 chr1 8014622 8014674 -234649679 + Alu SINE Alu 252 302 0 2279 112 0 0 chr1 8014720 8015014 -234649339 - AluSq SINE Alu -19 294 1 2136 104 4 0 chr1 8016269 8016548 -234647805 + AluSx SINE Alu 1 280 -32 417 123 0 0 chr1 8016585 8016650 -234647703 + (CA)n Simple_repeat Simple_repeat 2 66 0 669 245 55 19 chr1 8017354 8017611 -234646742 + L2 LINE L2 2250 2515 -799 845 114 0 53 chr1 8017619 8017750 -234646603 - FLAM_C SINE Alu -14 129 6 410 273 140 49 chr1 8017753 8018233 -234646120 + L2 LINE L2 2520 3064 -249 2152 113 7 0 chr1 8018233 8018549 -234645804 + AluSx SINE Alu 1 318 0 410 273 140 49 chr1 8018549 8018707 -234645646 + L2 LINE L2 3064 3206 -107 958 166 0 0 chr1 8018908 8019053 -234645300 + AluJo SINE Alu 1 145 -167 1816 142 13 43 chr1 8019054 8019198 -234645155 + AluSx SINE Alu 1 133 -179 1934 149 7 10 chr1 8019198 8019494 -234644859 + AluSx SINE Alu 4 298 -14 1816 142 13 43 chr1 8019494 8019652 -234644701 + AluSx SINE Alu 133 294 -18 207 0 0 0 chr1 8019809 8019832 -234644521 + (TCC)n Simple_repeat Simple_repeat 1 23 0 698 134 188 54 chr1 8020198 8020347 -234644006 - AluJo/FRAM SINE Alu -10 302 134 2260 71 39 0 chr1 8020347 8020627 -234643726 - AluY SINE Alu -20 291 1 2436 99 0 0 chr1 8020631 8020934 -234643419 - AluSx SINE Alu -9 303 1 2065 153 0 7 chr1 8020938 8021246 -234643107 - AluSx SINE Alu -6 306 1 201 293 116 80 chr1 8021568 8021793 -234642560 + L2 LINE L2 3034 3266 -6 2386 107 0 0 chr1 8021793 8022103 -234642250 + AluSx SINE Alu 1 310 -2 248 321 76 23 chr1 8022559 8022690 -234641663 + MIR SINE MIR 103 240 -22 1760 116 0 0 chr1 8023314 8023539 -234640814 + AluSg/x SINE Alu 75 299 -13 500 309 15 13 chr1 8023723 8023991 -234640362 - MER115 DNA AcHobo -339 354 25 2419 92 0 0 chr1 8024011 8024305 -234640048 - AluSx SINE Alu -18 294 1 335 296 165 24 chr1 8024473 8024679 -234639674 + MIR SINE MIR 7 241 -21 2324 96 3 0 chr1 8025214 8025505 -234638848 + AluSx SINE Alu 1 292 -20 396 0 0 0 chr1 8025509 8025553 -234638800 + (CA)n Simple_repeat Simple_repeat 2 45 0 2039 117 10 29 chr1 8025591 8025898 -234638455 + AluSx SINE Alu 1 301 -11 1391 115 0 0 chr1 8026321 8026503 -234637850 + AluSg/x SINE Alu 129 310 0 1653 177 71 159 chr1 8026707 8027340 -234637013 + MER63C DNA MER1_type 1 531 -529 947 205 91 24 chr1 8027340 8027550 -234636803 + MER58A DNA MER1_type 1 224 0 1653 177 71 159 chr1 8027550 8027827 -234636526 + MER63C DNA MER1_type 531 831 -99 214 98 39 0 chr1 8027827 8027878 -234636475 + (TA)n Simple_repeat Simple_repeat 2 54 0 344 207 135 0 chr1 8027878 8027989 -234636364 + MER63 DNA MER1_type 801 926 -135 1794 77 65 35 chr1 8027994 8028255 -234636098 + AluSg SINE Alu 26 294 -16 1698 206 3 0 chr1 8028258 8028550 -234635803 - AluJo SINE Alu -19 293 1 403 162 15 0 chr1 8028584 8028652 -234635701 - FRAM/FAM SINE Alu -108 68 1 447 206 98 0 chr1 8028658 8028760 -234635593 + MER63 DNA MER1_type 946 1057 -3 2326 79 3 7 chr1 8028987 8029278 -234635075 + AluSx SINE Alu 1 290 -22 212 75 0 25 chr1 8029281 8029321 -234635032 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 236 259 19 0 chr1 8029418 8029472 -234634881 + L3 LINE CR1 880 934 -643 1174 187 61 25 chr1 8030088 8030263 -234634090 + MLT1B LTR MaLR 2 169 -221 1826 116 33 14 chr1 8030263 8030539 -234633814 + AluJb SINE Alu 1 281 -31 2283 113 0 3 chr1 8030539 8030840 -234633513 - AluSx SINE Alu -11 301 1 1174 187 61 25 chr1 8030840 8031084 -234633269 + MLT1B LTR MaLR 168 373 -17 2122 99 11 3 chr1 8032558 8032862 -234631491 + AluSx SINE Alu 1 306 0 2157 123 0 10 chr1 8032862 8033170 -234631183 + AluSx SINE Alu 1 305 -7 1460 219 26 6 chr1 8033955 8034302 -234630051 + L1MC4 LINE L1 7280 7633 -409 958 170 0 6 chr1 8034402 8034561 -234629792 - AluSq SINE Alu -19 294 137 1285 170 208 0 chr1 8034680 8035107 -234629246 + Charlie1b DNA MER1_type 6 523 0 2175 95 63 0 chr1 8035313 8035598 -234628755 + AluSq SINE Alu 1 303 -10 241 202 228 70 chr1 8036301 8036372 -234627981 + MER112 DNA MER1_type 8 66 -194 348 24 0 0 chr1 8036372 8036413 -234627940 + (TG)n Simple_repeat Simple_repeat 1 41 0 241 202 228 70 chr1 8036413 8036455 -234627898 + MER112 DNA MER1_type 66 139 -121 198 91 0 0 chr1 8036466 8036499 -234627854 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 1793 137 128 18 chr1 8036511 8036681 -234627672 + THE1C LTR MaLR 2 152 -223 198 0 0 0 chr1 8036681 8036703 -234627650 + (TC)n Simple_repeat Simple_repeat 1 22 0 1793 137 128 18 chr1 8036703 8036869 -234627484 + THE1C LTR MaLR 152 375 0 523 124 165 10 chr1 8036869 8036966 -234627387 - AluJb SINE Alu -200 112 1 291 207 81 58 chr1 8036966 8037053 -234627300 + MER112 DNA MER1_type 167 255 -5 423 200 161 141 chr1 8037782 8037933 -234626420 + L1M4 LINE L1 3670 3817 -2329 1997 105 14 18 chr1 8037933 8038246 -234626107 + AluSx SINE Alu 1 312 0 423 200 161 141 chr1 8038246 8038359 -234625994 + L1M4 LINE L1 3817 3926 -2220 1979 156 17 3 chr1 8038359 8038661 -234625692 - AluSx SINE Alu -6 306 1 423 200 161 141 chr1 8038661 8038799 -234625554 + L1M4 LINE L1 3926 4082 -2064 248 235 202 45 chr1 8038803 8039050 -234625303 + L1MEd LINE L1 586 871 -5248 1728 211 7 45 chr1 8039058 8039147 -234625206 + L1M4 LINE L1 4709 4800 -1346 1830 104 94 14 chr1 8039147 8039434 -234624919 + AluSx SINE Alu 1 310 -2 1728 211 7 45 chr1 8039434 8039560 -234624793 + L1M4 LINE L1 4800 4929 -1217 1696 174 9 25 chr1 8039560 8039694 -234624659 + AluJo SINE Alu 1 136 -176 1993 142 0 32 chr1 8039694 8040010 -234624343 + AluSx SINE Alu 1 306 -6 1696 174 9 25 chr1 8040010 8040192 -234624161 + AluJo SINE Alu 136 312 0 1728 211 7 45 chr1 8040192 8040420 -234623933 + L1M4 LINE L1 4929 5136 -1010 502 298 35 67 chr1 8040428 8040710 -234623643 + L1MEd LINE L1 2253 2525 -3604 369 162 10 30 chr1 8040885 8040984 -234623369 + GA-rich Low_complexity Low_complexity 2 98 0 5519 141 72 15 chr1 8040984 8041709 -234622644 + L1MC1 LINE L1 5114 5929 -404 2289 82 0 13 chr1 8041709 8042014 -234622339 + AluSc SINE Alu 1 301 -8 5519 141 72 15 chr1 8042014 8042439 -234621914 + L1MC1 LINE L1 5929 6328 -5 686 179 42 2 chr1 8042445 8042682 -234621671 + AluJ SINE Alu 2 290 -22 27 0 0 0 chr1 8042702 8042729 -234621624 + AT_rich Low_complexity Low_complexity 1 27 0 350 222 56 58 chr1 8042748 8042896 -234621457 + L1MCa LINE L1 1941 2064 -4362 425 67 67 0 chr1 8042897 8043001 -234621352 + (TA)n Simple_repeat Simple_repeat 2 112 0 302 279 29 44 chr1 8043005 8043141 -234621212 + L1MCa LINE L1 1931 2064 -4362 200 59 29 0 chr1 8043142 8043176 -234621177 + (TA)n Simple_repeat Simple_repeat 2 36 0 306 197 61 0 chr1 8043356 8043422 -234620931 + L1MCa LINE L1 1995 2064 -4362 * 375 285 30 17 chr1 8043369 8043529 -234620824 - L1MC4 LINE L1 -1340 6982 1906 268 43 43 0 chr1 8043530 8043576 -234620777 + (TA)n Simple_repeat Simple_repeat 2 49 0 2350 120 0 0 chr1 8043586 8043894 -234620459 + AluSx SINE Alu 1 308 -4 434 202 141 46 chr1 8043905 8044251 -234620102 + L1MEd LINE L1 844 1250 -4869 554 310 35 4 chr1 8044279 8044508 -234619845 + L1M4 LINE L1 4460 4695 -1451 1877 170 3 0 chr1 8044637 8044919 -234619434 + AluJo SINE Alu 1 283 -29 652 266 144 9 chr1 8045085 8045230 -234619123 + MIR SINE MIR 3 127 -135 2362 102 0 3 chr1 8045230 8045534 -234618819 + AluSg SINE Alu 1 303 -7 652 266 144 9 chr1 8045534 8045617 -234618736 + MIR SINE MIR 127 262 0 1960 148 7 7 chr1 8045628 8045931 -234618422 + AluSx SINE Alu 1 303 -9 2374 89 3 0 chr1 8046176 8046479 -234617874 - AluSq SINE Alu -9 304 1 218 230 71 95 chr1 8046533 8046659 -234617694 + MIR3 SINE MIR 82 204 -4 2242 121 20 0 chr1 8047002 8047308 -234617045 + AluSx SINE Alu 1 312 0 950 176 78 5 chr1 8048399 8048603 -234615750 - MER20 DNA MER1_type 0 219 1 308 262 85 32 chr1 8048845 8049008 -234615345 + MIR SINE MIR 15 187 -62 2585 52 10 7 chr1 8049125 8049433 -234614920 - AluY SINE Alu -2 309 1 1982 134 33 16 chr1 8049527 8049832 -234614521 - AluJo SINE Alu -2 310 1 880 106 29 39 chr1 8049984 8050384 -234613969 + (CA)n Simple_repeat Simple_repeat 1 396 0 556 134 43 12 chr1 8050437 8050691 -234613662 + (CA)n Simple_repeat Simple_repeat 1 262 0 464 145 120 51 chr1 8050809 8050926 -234613427 - L2 LINE L2 0 3313 3189 1963 163 10 3 chr1 8051003 8051310 -234613043 + AluJb SINE Alu 3 311 -1 1914 158 3 23 chr1 8051320 8051623 -234612730 + AluJo SINE Alu 3 299 -13 318 264 32 8 chr1 8052341 8052466 -234611887 - L2 LINE L2 -292 2980 2853 2132 123 0 0 chr1 8052592 8052901 -234611452 + AluSx SINE Alu 1 309 0 246 160 0 0 chr1 8053059 8053109 -234611244 + L1M4 LINE L1 5408 5457 -727 508 68 55 0 chr1 8053126 8053199 -234611154 - L1MA8 LINE L1 -341 5950 5874 1101 173 19 39 chr1 8053283 8053360 -234610993 - AluJo SINE Alu -103 209 132 2296 112 3 10 chr1 8053360 8053674 -234610679 - AluSx SINE Alu 0 312 1 2813 19 0 3 chr1 8053675 8053987 -234610366 - AluY SINE Alu 0 311 1 1101 173 19 39 chr1 8053987 8054115 -234610238 - AluJo SINE Alu -179 133 6 184 364 11 0 chr1 8054254 8054342 -234610011 - L2 LINE L2 -785 2529 2441 969 201 91 80 chr1 8054545 8054761 -234609592 + LTR56 LTR ERV1 9 221 -216 2385 83 0 13 chr1 8054761 8055062 -234609291 + AluSg SINE Alu 1 297 -13 969 201 91 80 chr1 8055062 8055292 -234609061 + LTR56 LTR ERV1 221 437 0 391 186 145 40 chr1 8055582 8055706 -234608647 + MIR SINE MIR 14 150 -112 681 107 34 6 chr1 8055707 8055943 -234608410 + AluJ SINE Alu 1 292 -20 259 284 54 0 chr1 8055972 8056046 -234608307 + MIR SINE MIR 180 257 -5 198 254 45 15 chr1 8056076 8056143 -234608210 - MIR SINE MIR -131 131 63 1739 169 3 23 chr1 8056222 8056524 -234607829 - AluJb SINE Alu -16 296 1 1883 170 10 6 chr1 8056688 8056999 -234607354 + AluJo SINE Alu 1 312 0 573 211 59 0 chr1 8057707 8057859 -234606494 + MER20 DNA MER1_type 56 216 -3 2477 86 0 0 chr1 8057897 8058198 -234606155 + AluSx SINE Alu 1 301 -11 834 232 75 46 chr1 8058224 8058438 -234605915 - MIR SINE MIR -10 252 29 2201 83 0 0 chr1 8058438 8058702 -234605651 - AluSq SINE Alu -11 302 39 834 232 75 46 chr1 8058702 8058728 -234605625 - MIR SINE MIR -233 29 5 2509 81 7 0 chr1 8060061 8060369 -234603984 - AluSq SINE Alu -3 310 1 2166 94 0 0 chr1 8061116 8061392 -234602961 + AluSx SINE Alu 1 276 -36 389 279 85 0 chr1 8061871 8062036 -234602317 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 618 124 171 0 chr1 8062292 8062397 -234601956 + FRAM SINE Alu 46 168 -8 221 302 93 35 chr1 8062457 8062629 -234601724 - L2 LINE L2 -665 2649 2468 2129 116 19 41 chr1 8062662 8062980 -234601373 + AluSx SINE Alu 1 311 -1 581 272 241 18 chr1 8063246 8063628 -234600725 + MLT1J LTR MaLR 43 509 -2 3532 176 48 38 chr1 8064210 8064587 -234599766 - L1MB7 LINE L1 -1 6183 5811 2152 107 3 10 chr1 8064587 8064887 -234599466 - AluSx SINE Alu -13 299 2 3532 176 48 38 chr1 8064887 8065182 -234599171 - L1MB7 LINE L1 -373 5811 5498 1351 145 123 45 chr1 8065182 8065331 -234599022 - AluJo SINE Alu -22 290 154 2411 93 0 0 chr1 8065331 8065631 -234598722 - AluSq SINE Alu -11 302 3 1351 145 123 45 chr1 8065631 8065750 -234598603 - AluJo SINE Alu -158 154 1 3532 176 48 38 chr1 8065750 8065923 -234598430 - L1MB7 LINE L1 -686 5498 5328 285 128 0 0 chr1 8065923 8065970 -234598383 + (TC)n Simple_repeat Simple_repeat 2 48 0 2232 125 3 0 chr1 8065978 8066283 -234598070 - AluSx SINE Alu -6 306 1 1206 198 24 10 chr1 8066283 8066572 -234597781 - L1MB7 LINE L1 -809 5337 5042 1019 221 36 50 chr1 8066558 8066648 -234597705 - L1MB7 LINE L1 -1346 4800 4710 * 2040 140 7 0 chr1 8066648 8066941 -234597412 - AluSx SINE Alu -13 299 5 1019 221 36 50 chr1 8066941 8067208 -234597145 - L1MB7 LINE L1 -1436 4710 4448 686 169 46 23 chr1 8067283 8067413 -234596940 + AluJo/FLAM SINE Alu 1 133 -169 2177 110 16 7 chr1 8067413 8067723 -234596630 + AluSq SINE Alu 1 313 0 388 288 137 36 chr1 8067735 8067874 -234596479 - L1ME3A LINE L1 -23 6147 5995 555 169 0 0 chr1 8067897 8067986 -234596367 - FLAM_A SINE Alu -46 96 8 907 208 11 60 chr1 8068041 8068306 -234596047 - L1ME3A LINE L1 -224 5946 5695 23 0 0 0 chr1 8068794 8068817 -234595536 + AT_rich Low_complexity Low_complexity 1 23 0 2284 94 3 7 chr1 8069337 8069636 -234594717 + AluY SINE Alu 3 300 -11 6798 116 3 8 chr1 8069640 8070640 -234593713 + HERVFH19I LTR ERV1 1210 2204 -5515 2182 74 0 0 chr1 8070744 8071001 -234593352 - AluY SINE Alu -54 257 1 2610 121 36 5 chr1 8071027 8071416 -234592937 + HERVFH19I LTR ERV1 1 401 -7318 * 2877 137 11 4 chr1 8071409 8071876 -234592477 + HERVFH19I LTR ERV1 702 1171 -4415 824 114 14 2 chr1 8072261 8072484 -234591869 + AluJ SINE Alu 29 300 -12 294 202 83 89 chr1 8072782 8072966 -234591387 + MLT1C LTR MaLR 103 268 -199 2037 106 24 3 chr1 8073010 8073303 -234591050 + AluSx SINE Alu 1 299 -13 1706 161 4 4 chr1 8073608 8073888 -234590465 - AluJb SINE Alu -18 294 15 1957 114 19 62 chr1 8074415 8074740 -234589613 - AluSx SINE Alu -1 311 1 183 337 101 6 chr1 8074773 8074942 -234589411 + L2 LINE L2 2468 2652 -662 629 123 170 0 chr1 8075005 8075111 -234589242 - FRAM SINE Alu -7 169 46 1366 113 10 0 chr1 8076456 8076660 -234587693 + MLT2A2 LTR ERVL 1 206 -247 832 116 68 27 chr1 8076661 8076807 -234587546 + AluSq/x SINE Alu 1 152 -161 351 153 0 0 chr1 8076808 8076867 -234587486 + Alu SINE Alu 241 299 -2 * 1817 81 18 56 chr1 8076849 8077048 -234587305 + MLT2A2 LTR ERVL 181 386 -67 2161 86 30 7 chr1 8077048 8077349 -234587004 + AluY SINE Alu 1 308 -3 1817 81 18 56 chr1 8077349 8077369 -234586984 + MLT2A2 LTR ERVL 386 405 -48 1909 147 3 3 chr1 8077369 8077669 -234586684 + AluSx SINE Alu 1 300 -12 1817 81 18 56 chr1 8077669 8077732 -234586621 + MLT2A2 LTR ERVL 405 453 0 1839 157 10 13 chr1 8078403 8078581 -234585772 - AluJb SINE Alu 0 312 134 2232 96 0 7 chr1 8078581 8078883 -234585470 - AluSq SINE Alu -13 300 1 1839 157 10 13 chr1 8078883 8079017 -234585336 - AluJb SINE Alu -178 134 1 2123 192 47 5 chr1 8079297 8079725 -234584628 + L1MB4 LINE L1 5696 6141 -39 248 189 0 0 chr1 8079725 8079762 -234584591 + Alu SINE Alu 1 37 -265 604 124 0 0 chr1 8079762 8079851 -234584502 - AluSg/x SINE Alu -9 303 215 1048 113 38 6 chr1 8079857 8080017 -234584336 - AluSq SINE Alu -148 165 1 279 277 64 14 chr1 8080029 8080170 -234584183 + L2 LINE L2 2700 2847 -467 233 211 197 0 chr1 8080174 8080245 -234584108 - MLT1E2 LTR MaLR -368 258 174 980 153 13 0 chr1 8080261 8080418 -234583935 - FRAM SINE Alu -1 175 17 1550 164 54 0 chr1 8080643 8080923 -234583430 + AluJb SINE Alu 1 295 -17 1769 101 4 4 chr1 8080979 8081226 -234583127 - AluSq SINE Alu -66 247 1 22 56 0 0 chr1 8081666 8081702 -234582651 + AT_rich Low_complexity Low_complexity 1 36 0 611 214 29 46 chr1 8081714 8081887 -234582466 + L1MD2 LINE L1 6180 6349 -10 * 1361 168 51 9 chr1 8081863 8082164 -234582189 + L1MD3 LINE L1 7600 7994 -1 2511 51 3 6 chr1 8082366 8082678 -234581675 + AluSq SINE Alu 3 313 0 1310 119 0 10 chr1 8083280 8083474 -234580879 - AluSx SINE Alu -57 255 64 1650 125 33 22 chr1 8083482 8083754 -234580599 - AluSx SINE Alu -23 289 15 1833 139 14 7 chr1 8084240 8084534 -234579819 - AluJb SINE Alu -16 296 1 790 138 69 0 chr1 8084538 8084681 -234579672 - MLT1B LTR MaLR -215 175 23 337 189 0 0 chr1 8084681 8084734 -234579619 + Alu SINE Alu 1 53 -249 * 361 65 0 0 chr1 8084729 8084775 -234579578 + FLAM SINE Alu 81 126 -7 2434 80 0 0 chr1 8084788 8085099 -234579254 + AluSx SINE Alu 1 311 -1 199 342 17 42 chr1 8085315 8085435 -234578918 + L3b LINE CR1 1218 1334 -249 201 138 0 0 chr1 8085755 8085784 -234578569 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 832 171 0 11 chr1 8085786 8085967 -234578386 + GA-rich Low_complexity Low_complexity 1 179 0 1742 131 26 35 chr1 8085969 8086282 -234578071 + AluSx SINE Alu 1 310 -2 547 190 107 133 chr1 8086562 8086909 -234577444 - Charlie4a DNA MER1_type -19 489 152 952 139 0 0 chr1 8086936 8087107 -234577246 + FRAM SINE Alu 2 172 0 653 171 8 0 chr1 8088075 8088198 -234576155 - L1MB7 LINE L1 -16 6168 6045 28 29 0 0 chr1 8088199 8088234 -234576119 + AT_rich Low_complexity Low_complexity 1 35 0 1327 155 5 0 chr1 8088240 8088453 -234575900 - AluJo SINE Alu -24 288 75 2076 104 21 0 chr1 8088636 8088925 -234575428 + AluSx SINE Alu 1 295 -17 257 0 0 29 chr1 8089702 8089736 -234574617 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 276 272 93 25 chr1 8089835 8090028 -234574325 + MIR SINE MIR 2 197 -31 1941 108 29 55 chr1 8090130 8090437 -234573916 + AluSq SINE Alu 1 299 -14 265 298 46 53 chr1 8091636 8091767 -234572586 + MER5A DNA MER1_type 46 175 -14 1948 109 30 46 chr1 8091844 8092146 -234572207 - AluSx SINE Alu -15 297 1 841 170 0 0 chr1 8092559 8092700 -234571653 + FLAM_C SINE Alu 1 141 -2 1591 204 31 28 chr1 8092740 8093128 -234571225 + MLT2C1 LTR ERVL 1 389 -8 673 141 0 113 chr1 8093336 8093478 -234570875 - AluJo SINE Alu -178 134 9 1406 131 49 16 chr1 8093482 8093727 -234570626 - AluJo SINE Alu -18 294 42 496 306 153 0 chr1 8094142 8094358 -234569995 - MIR SINE MIR 0 262 14 1506 162 0 81 chr1 8096246 8096431 -234567922 - AluJb SINE Alu -6 306 158 2233 103 0 3 chr1 8096431 8096732 -234567621 - AluSx SINE Alu -11 301 2 1506 162 0 81 chr1 8096732 8096879 -234567474 - AluJb SINE Alu -154 158 1 2186 91 13 3 chr1 8097605 8097914 -234566439 + AluSx SINE Alu 1 312 0 2022 85 26 29 chr1 8097926 8098232 -234566121 + AluSg SINE Alu 1 305 -5 1735 156 30 7 chr1 8098687 8098982 -234565371 + AluJo SINE Alu 1 302 -10 240 111 0 0 chr1 8099078 8099114 -234565239 + (TG)n Simple_repeat Simple_repeat 2 37 0 895 132 0 0 chr1 8099140 8099276 -234565077 + AluJb SINE Alu 1 136 -176 2218 103 3 0 chr1 8099868 8100169 -234564184 - AluSx SINE Alu -8 304 3 203 322 17 0 chr1 8100564 8100623 -234563730 + L2 LINE L2 3244 3303 -10 2195 100 0 0 chr1 8100815 8101105 -234563248 + AluY SINE Alu 1 290 -21 224 209 0 0 chr1 8103208 8103251 -234561102 - L2 LINE L2 0 3272 3230 297 280 118 0 chr1 8103286 8103379 -234560974 - L2 LINE L2 -338 2976 2873 297 322 68 1 chr1 8103651 8103797 -234560556 + MIR SINE MIR 18 169 -67 1971 148 0 0 chr1 8104025 8104323 -234560030 - AluJo SINE Alu -14 298 1 2170 92 7 13 chr1 8105151 8105456 -234558897 + AluSx SINE Alu 1 303 -9 531 287 51 19 chr1 8105675 8105791 -234558562 - MER2 DNA MER2_type 0 345 234 774 167 8 0 chr1 8105791 8105923 -234558430 + FLAM_C SINE Alu 1 133 0 531 287 51 19 chr1 8105923 8106022 -234558331 - MER2 DNA MER2_type -111 234 123 2163 92 3 0 chr1 8106023 8106317 -234558036 + AluSq SINE Alu 1 295 -18 774 134 84 0 chr1 8106319 8106438 -234557915 + AluSg/x SINE Alu 145 273 -39 590 215 25 0 chr1 8106445 8106566 -234557787 - MER2 DNA MER2_type -220 125 2 1378 122 22 17 chr1 8107086 8107316 -234557037 - AluJb SINE Alu 0 312 82 2104 131 0 0 chr1 8107417 8107715 -234556638 + AluSx SINE Alu 1 298 -14 454 183 0 24 chr1 8107715 8107791 -234556562 - FLAM_A SINE Alu -24 118 45 626 286 57 40 chr1 8108011 8108259 -234556094 - MIR SINE MIR -3 259 8 2789 199 46 33 chr1 8108352 8108934 -234555419 - MLT1E LTR MaLR -3 590 1 221 0 0 33 chr1 8109802 8109832 -234554521 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1058 162 5 79 chr1 8110371 8110532 -234553821 - MER20 DNA MER1_type -4 215 72 2220 119 0 0 chr1 8110532 8110835 -234553518 - AluSx SINE Alu -9 303 1 1058 162 5 79 chr1 8110835 8110889 -234553464 - MER20 DNA MER1_type -147 72 16 907 83 15 8 chr1 8111594 8111726 -234552627 - AluSp SINE Alu -180 133 1 255 125 0 0 chr1 8113133 8113173 -234551180 + (T)n Simple_repeat Simple_repeat 1 40 0 638 281 50 15 chr1 8114158 8114241 -234550112 - MLT1L LTR MaLR 0 615 536 1596 170 23 13 chr1 8114241 8114366 -234549987 + AluJo SINE Alu 1 123 -189 183 42 0 0 chr1 8114366 8114390 -234549963 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 1596 170 23 13 chr1 8114390 8114564 -234549789 + AluJo SINE Alu 123 303 -9 638 281 50 15 chr1 8114564 8114679 -234549674 - MLT1L LTR MaLR -79 536 410 476 238 57 0 chr1 8114719 8114841 -234549512 - MLT1L LTR MaLR -324 291 163 259 284 12 12 chr1 8114884 8114965 -234549388 - MLT1L LTR MaLR -534 81 1 355 358 0 0 chr1 8115036 8115131 -234549222 + L1MC4 LINE L1 6614 6708 -1334 2114 112 3 3 chr1 8115152 8115448 -234548905 + AluSq SINE Alu 3 298 -15 180 77 0 0 chr1 8115565 8115591 -234548762 + (T)n Simple_repeat Simple_repeat 1 26 0 2098 97 16 10 chr1 8116117 8116426 -234547927 - AluSx SINE Alu -1 311 1 1971 115 0 17 chr1 8116667 8116995 -234547358 - AluSq SINE Alu 0 323 1 1362 179 80 7 chr1 8116997 8117271 -234547082 - AluJb SINE Alu -18 294 1 1988 147 0 6 chr1 8118451 8118765 -234545588 - AluSx SINE Alu 0 312 1 363 169 0 0 chr1 8120185 8120244 -234544109 - AluJ/FLAM SINE Alu -233 69 11 885 137 82 0 chr1 8120250 8120396 -234543957 - AluJo/FRAM SINE Alu -11 301 144 2196 102 14 0 chr1 8320668 8320951 -234343402 + AluSp SINE Alu 3 289 -24 316 182 0 4 chr1 8322107 8322177 -234342176 + FRAM/FAM SINE Alu 1 52 -123 912 126 0 0 chr1 8322227 8322354 -234341999 - FLAM_C SINE Alu -16 127 1 1097 174 0 0 chr1 8322420 8322598 -234341755 - FRAM SINE Alu -1 175 1 650 310 92 38 chr1 8322736 8323027 -234341326 - MARNA DNA Mariner -59 527 253 2220 98 10 26 chr1 8323027 8323333 -234341020 - AluSg SINE Alu -9 301 1 2402 104 3 0 chr1 8323335 8323644 -234340709 - AluSq SINE Alu -3 310 1 650 310 92 38 chr1 8323644 8323720 -234340633 - MARNA DNA Mariner -333 253 137 2119 125 0 0 chr1 8323956 8324265 -234340088 + AluSg SINE Alu 1 309 0 1659 95 151 0 chr1 8325103 8325355 -234338998 + AluSg SINE Alu 1 290 -20 2182 127 3 0 chr1 8325365 8325664 -234338689 + AluSp SINE Alu 1 300 -13 2232 131 0 0 chr1 8325664 8325962 -234338391 + AluSg SINE Alu 1 298 -12 2278 116 0 3 chr1 8325971 8326273 -234338080 + AluSx SINE Alu 1 301 -11 1743 146 0 4 chr1 8326272 8326532 -234337821 + AluSx SINE Alu 50 308 -4 * 2194 112 3 37 chr1 8327060 8327263 -234337090 - AluSq SINE Alu -2 311 122 2539 68 3 7 chr1 8327263 8327573 -234336780 - AluSx SINE Alu -3 309 1 2194 112 3 37 chr1 8327573 8327691 -234336662 - AluSq SINE Alu -191 122 1 2324 102 0 0 chr1 8327750 8328043 -234336310 - AluSc SINE Alu -16 293 1 467 225 0 115 chr1 8328122 8328185 -234336168 + HsTC2 DNA Tc2 1558 1627 -271 1694 175 28 3 chr1 8328185 8328470 -234335883 + AluJb SINE Alu 1 292 -20 467 225 0 115 chr1 8328470 8328588 -234335765 + HsTC2 DNA Tc2 1627 1718 -180 2461 94 0 0 chr1 8328588 8328896 -234335457 + AluSx SINE Alu 1 308 -4 1261 116 0 22 chr1 8328938 8328953 -234335400 + AluSc SINE Alu 120 134 -175 2386 98 3 0 chr1 8328953 8329250 -234335103 + AluSx SINE Alu 1 298 -14 1261 116 0 22 chr1 8329250 8329415 -234334938 + AluSc SINE Alu 134 296 -13 2137 110 10 7 chr1 8329417 8329707 -234334646 + AluY SINE Alu 3 293 -18 2350 110 0 3 chr1 8329855 8330165 -234334188 + AluSx SINE Alu 1 309 -3 2325 96 0 0 chr1 8330432 8330723 -234333630 + AluSc SINE Alu 5 295 -14 410 203 187 0 chr1 8330758 8330881 -234333472 + MLT1H LTR MaLR 35 180 -369 2346 81 17 3 chr1 8331332 8331627 -234332726 - AluY SINE Alu -12 299 1 339 272 55 40 chr1 8331633 8331905 -234332448 - HAL1 LINE L1 -5 2502 2227 1412 252 75 37 chr1 8331934 8332272 -234332081 - HAL1 LINE L1 -923 1584 1211 1900 123 4 0 chr1 8332272 8332532 -234331821 - AluSx SINE Alu -12 300 40 1412 252 75 37 chr1 8332532 8332809 -234331544 - HAL1 LINE L1 -1296 1211 946 246 296 14 0 chr1 8332881 8332952 -234331401 - HAL1 LINE L1 -1798 709 638 323 261 87 87 chr1 8332953 8333068 -234331285 + MIR SINE MIR 5 119 -143 1335 117 0 6 chr1 8333071 8333251 -234331102 - AluSg/x SINE Alu 0 312 134 1993 71 0 20 chr1 8333251 8333504 -234330849 - AluY SINE Alu -11 300 53 273 114 0 0 chr1 8333604 8333648 -234330705 - AluJ/FLAM SINE Alu -224 78 35 1169 154 5 41 chr1 8333656 8333877 -234330476 + AluJo SINE Alu 87 299 -13 1990 113 53 3 chr1 8333981 8334264 -234330089 + AluY SINE Alu 1 297 -14 2466 84 0 0 chr1 8334351 8334649 -234329704 + AluSc SINE Alu 1 298 -11 2167 131 3 6 chr1 8334705 8335017 -234329336 - AluSx SINE Alu -1 311 1 1530 178 65 7 chr1 8335037 8335312 -234329041 + AluJo SINE Alu 3 293 -19 2171 128 0 0 chr1 8335330 8335626 -234328727 + AluSx SINE Alu 1 296 -16 24 38 0 38 chr1 8335626 8335644 -234328709 + AT_rich Low_complexity Low_complexity 1 18 -33 2263 116 0 0 chr1 8335644 8335936 -234328417 + AluSx SINE Alu 1 292 -20 24 38 0 38 chr1 8335936 8335970 -234328383 + AT_rich Low_complexity Low_complexity 18 51 0 612 249 83 5 chr1 8336041 8336246 -234328107 + HAL1 LINE L1 1359 1579 -928 1992 128 0 43 chr1 8336255 8336560 -234327793 + AluSx SINE Alu 1 292 -20 284 244 37 24 chr1 8336665 8336747 -234327606 - HAL1 LINE L1 -767 1740 1658 267 266 195 0 chr1 8336740 8336853 -234327500 + HAL1 LINE L1 1678 1812 -695 * 1702 157 29 55 chr1 8337000 8337312 -234327041 + AluJb SINE Alu 2 305 -7 2478 69 0 3 chr1 8337382 8337685 -234326668 - AluY SINE Alu -9 302 1 208 158 26 0 chr1 8337734 8337772 -234326581 + L2 LINE L2 2720 2758 -556 285 226 97 0 chr1 8337873 8337935 -234326418 + MIR SINE MIR 20 87 -121 2265 97 7 3 chr1 8338113 8338411 -234325942 - AluSg SINE Alu -11 299 1 304 273 15 0 chr1 8338432 8338498 -234325855 + L1MC/D LINE L1 5709 5775 -2033 2026 145 0 0 chr1 8338588 8338896 -234325457 - AluSx SINE Alu 0 308 1 284 178 0 0 chr1 8338913 8338958 -234325395 + Alu SINE Alu 2 46 -255 343 143 86 0 chr1 8339852 8339922 -234324431 + MER103 DNA DNA 9 84 -82 2608 74 0 0 chr1 8340156 8340467 -234323886 - AluY SINE Alu 0 311 1 1296 148 106 68 chr1 8340666 8340742 -234323611 - Charlie1 DNA MER1_type -4 2757 2685 2004 131 13 45 chr1 8340742 8341056 -234323297 - AluSq SINE Alu -9 304 1 1296 148 106 68 chr1 8341056 8341177 -234323176 - Charlie1 DNA MER1_type -76 2685 2570 2421 103 0 0 chr1 8341177 8341479 -234322874 - AluSx SINE Alu -10 302 1 1296 148 106 68 chr1 8341479 8341678 -234322675 - Charlie1 DNA MER1_type -191 2570 2345 2209 107 13 0 chr1 8341922 8342221 -234322132 - AluSg SINE Alu -7 303 1 1691 170 47 0 chr1 8342221 8342498 -234321855 - AluJb SINE Alu -19 293 4 2517 57 0 7 chr1 8342682 8342983 -234321370 - AluSc SINE Alu -10 299 1 2240 124 3 0 chr1 8343244 8343543 -234320810 - AluSx SINE Alu -12 300 1 2128 136 7 10 chr1 8343941 8344250 -234320103 + AluJb SINE Alu 1 308 -4 292 282 0 0 chr1 8344271 8344342 -234320011 - MIR3 SINE MIR -14 194 124 307 349 77 26 chr1 8344649 8344844 -234319509 - L3 LINE CR1 -2 1575 1371 945 254 28 14 chr1 8344862 8345075 -234319278 + MIR SINE MIR 3 218 -44 671 139 130 83 chr1 8345092 8345208 -234319145 - L1M4 LINE L1 -2378 3768 3659 2340 88 0 3 chr1 8345208 8345504 -234318849 + AluSp SINE Alu 1 295 -18 671 139 130 83 chr1 8345504 8345603 -234318750 - L1M4 LINE L1 -2487 3659 3543 691 208 87 63 chr1 8346608 8346815 -234317538 - L2 LINE L2 0 3313 3102 2385 55 41 3 chr1 8346833 8347125 -234317228 + AluY SINE Alu 1 303 -8 2250 97 0 0 chr1 8347136 8347415 -234316938 + AluSg SINE Alu 1 279 -31 946 266 38 26 chr1 8347444 8347711 -234316642 - L2 LINE L2 -495 2819 2550 2267 106 0 3 chr1 8348020 8348323 -234316030 + AluSx SINE Alu 1 302 -10 217 318 45 0 chr1 8348376 8348442 -234315911 - MIR3 SINE MIR -11 197 129 240 385 9 0 chr1 8348551 8348660 -234315693 + L2 LINE L2 3194 3303 -10 2400 99 0 3 chr1 8348912 8349216 -234315137 - AluSq SINE Alu -10 303 1 827 285 61 4 chr1 8349219 8349465 -234314888 + MIR SINE MIR 3 262 0 307 247 116 41 chr1 8349459 8349605 -234314748 + L2 LINE L2 3155 3311 -2 * 535 268 160 72 chr1 8349587 8349762 -234314591 - L2 LINE L2 -4 3309 3151 2446 56 0 26 chr1 8349762 8350065 -234314288 + AluY SINE Alu 1 295 -16 535 268 160 72 chr1 8350065 8350289 -234314064 - L2 LINE L2 -162 3151 2875 667 269 71 10 chr1 8351422 8351619 -234312734 - MIR SINE MIR -52 210 2 406 214 60 34 chr1 8351720 8351837 -234312516 + MIR SINE MIR 50 169 -93 292 388 0 0 chr1 8352319 8352422 -234311931 - L2 LINE L2 0 3272 3170 2470 86 0 0 chr1 8352422 8352725 -234311628 + AluY SINE Alu 1 303 -8 1545 161 31 23 chr1 8355106 8355366 -234308987 - AluY SINE Alu -49 262 1 2142 121 17 0 chr1 8355399 8355696 -234308657 - AluSx SINE Alu -10 302 1 258 32 0 0 chr1 8355697 8355728 -234308625 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2093 112 4 4 chr1 8355728 8356006 -234308347 - AluSc SINE Alu -28 281 4 2445 88 0 0 chr1 8356009 8356314 -234308039 - AluSx SINE Alu -7 305 1 333 182 76 0 chr1 8356353 8356419 -234307934 - MER2 DNA MER2_type -1 344 274 522 110 0 0 chr1 8356419 8356501 -234307852 + L1PB1 LINE L1 6069 6150 -1 21 82 0 0 chr1 8356501 8356550 -234307803 + AT_rich Low_complexity Low_complexity 1 49 0 1268 135 19 5 chr1 8356600 8356807 -234307546 - MER2 DNA MER2_type -135 210 1 516 277 55 25 chr1 8356810 8356939 -234307414 - L1M4 LINE L1 -812 5334 5195 2186 128 0 0 chr1 8356939 8357244 -234307109 - AluSc SINE Alu -4 305 1 516 277 55 25 chr1 8357244 8357316 -234307037 - L1M4 LINE L1 -951 5195 5127 2244 101 16 10 chr1 8357341 8357649 -234306704 - AluSg SINE Alu 0 310 1 1402 175 15 94 chr1 8357652 8357983 -234306370 - AluJo SINE Alu -7 305 1 2572 68 0 0 chr1 8358005 8358315 -234306038 - AluY SINE Alu -1 310 1 2145 103 3 29 chr1 8358318 8358495 -234305858 - AluSg SINE Alu -6 304 137 2354 108 0 0 chr1 8358495 8358801 -234305552 - AluSg SINE Alu -4 306 1 2145 103 3 29 chr1 8358801 8358935 -234305418 - AluSg SINE Alu -173 137 1 1072 103 0 0 chr1 8358935 8359071 -234305282 - AluSq/x SINE Alu -176 136 1 608 283 123 24 chr1 8359172 8359554 -234304799 + L1MC4 LINE L1 7356 7775 -267 1784 142 17 30 chr1 8359560 8359691 -234304662 + AluSx SINE Alu 1 132 -180 2305 88 3 10 chr1 8359691 8359987 -234304366 + AluSg SINE Alu 1 294 -16 2011 138 10 0 chr1 8359990 8360279 -234304074 + AluSx SINE Alu 1 292 -20 2410 90 3 0 chr1 8360281 8360582 -234303771 + AluY SINE Alu 1 302 -9 1784 142 17 30 chr1 8360582 8360739 -234303614 + AluSx SINE Alu 135 292 -20 1519 168 0 0 chr1 8360739 8360965 -234303388 + AluJb SINE Alu 80 305 -7 1072 173 0 0 chr1 8360967 8361140 -234303213 + AluJb SINE Alu 136 308 -4 632 252 53 68 chr1 8361150 8361416 -234302937 + L1MC4 LINE L1 7781 8042 0 1136 129 12 12 chr1 8362876 8363047 -234301306 - AluJo/FRAM SINE Alu -9 303 133 2589 50 0 0 chr1 8363048 8363345 -234301008 - AluY SINE Alu -12 299 3 346 161 0 0 chr1 8363383 8363439 -234300914 + AluS SINE Alu 2 57 -245 1291 123 29 84 chr1 8363667 8363846 -234300507 + MLT1B LTR MaLR 4 211 -256 2478 77 3 0 chr1 8363846 8364145 -234300208 + AluY SINE Alu 2 301 -10 1291 123 29 84 chr1 8364145 8364276 -234300077 + MLT1B LTR MaLR 211 348 -119 649 142 11 40 chr1 8364345 8364521 -234299832 + GA-rich Low_complexity Low_complexity 2 172 0 2111 135 0 19 chr1 8364528 8364846 -234299507 + AluSx SINE Alu 1 312 0 2470 77 0 6 chr1 8364851 8365164 -234299189 + AluY SINE Alu 1 311 0 339 129 65 0 chr1 8365189 8365251 -234299102 - AluJo SINE Alu 0 302 237 924 181 139 0 chr1 8365252 8365418 -234298935 - AluJo SINE Alu -123 189 1 689 175 0 0 chr1 8365420 8365534 -234298819 + MLT1B LTR MaLR 275 388 -2 313 251 174 49 chr1 8365949 8365985 -234298368 - MIR SINE MIR -63 145 115 2087 148 0 3 chr1 8365985 8366282 -234298071 - AluJo SINE Alu -16 296 1 313 251 174 49 chr1 8366282 8366408 -234297945 - MIR SINE MIR -93 115 14 608 103 0 41 chr1 8366460 8366557 -234297796 + AluS SINE Alu 1 93 -220 871 255 157 40 chr1 8367128 8367328 -234297025 - L2 LINE L2 0 3313 3138 2036 109 0 4 chr1 8367328 8367595 -234296758 + AluSx SINE Alu 1 266 -46 871 255 157 40 chr1 8367595 8367841 -234296512 - L2 LINE L2 -175 3138 2815 695 213 18 7 chr1 8368090 8368368 -234295985 - MLT1I LTR MaLR -7 402 1 736 112 32 8 chr1 8370246 8370371 -234293982 - AluY SINE Alu -171 140 13 1894 173 0 0 chr1 8370625 8370944 -234293409 + AluJb SINE Alu 1 300 -12 2127 143 0 0 chr1 8371295 8371589 -234292764 - AluSx SINE Alu -14 298 5 2327 114 0 0 chr1 8372010 8372309 -234292044 + AluSx SINE Alu 2 300 -12 2200 109 0 56 chr1 8372644 8372782 -234291571 + AluSx SINE Alu 1 145 -167 207 100 0 0 chr1 8372782 8372812 -234291541 + (TA)n Simple_repeat Simple_repeat 1 30 0 2200 109 0 56 chr1 8372812 8372993 -234291360 + AluSx SINE Alu 145 302 -10 660 157 0 8 chr1 8373112 8373233 -234291120 - AluSg/x SINE Alu -5 305 186 210 71 0 0 chr1 8373560 8373588 -234290765 + (TCC)n Simple_repeat Simple_repeat 3 30 0 306 326 123 9 chr1 8374141 8374368 -234289985 - MIR SINE MIR 0 262 10 1742 98 0 0 chr1 8374647 8374861 -234289492 + AluSq SINE Alu 88 301 -12 258 116 0 0 chr1 8375493 8375536 -234288817 + (GA)n Simple_repeat Simple_repeat 2 44 0 469 244 85 18 chr1 8376368 8376532 -234287821 + L3 LINE CR1 1337 1511 -66 261 234 0 16 chr1 8379592 8379656 -234284697 + (GGGTG)n Simple_repeat Simple_repeat 1 63 0 2342 115 0 6 chr1 8380374 8380686 -234283667 - AluSg SINE Alu 0 310 1 5374 206 83 27 chr1 8382822 8383106 -234281247 + L1M4 LINE L1 3657 3923 -2223 2313 88 27 3 chr1 8383106 8383401 -234280952 + AluSq SINE Alu 1 302 -11 5374 206 83 27 chr1 8383401 8383697 -234280656 + L1M4 LINE L1 3923 4201 -1945 2098 150 0 0 chr1 8383697 8383991 -234280362 - AluJb SINE Alu -18 294 1 5374 206 83 27 chr1 8383991 8384741 -234279612 + L1M4 LINE L1 4201 5089 -1057 1569 175 6 48 chr1 8384741 8384923 -234279430 - AluJo SINE Alu -9 303 138 1957 122 0 7 chr1 8384923 8385193 -234279160 + AluSx SINE Alu 45 312 0 1569 175 6 48 chr1 8385193 8385325 -234279028 - AluJo SINE Alu -174 138 2 5374 206 83 27 chr1 8385325 8385526 -234278827 + L1M4 LINE L1 5089 5277 -869 1424 90 0 5 chr1 8385526 8385714 -234278639 - AluSg/x SINE Alu -10 300 114 1407 167 30 15 chr1 8385814 8386110 -234278243 + L1MB7 LINE L1 5742 6052 -112 2145 103 0 23 chr1 8386122 8386451 -234277902 + AluY SINE Alu 1 311 0 654 162 80 32 chr1 8386468 8386482 -234277871 + L1M4 LINE L1 5411 5423 -745 2396 78 0 36 chr1 8386482 8386791 -234277562 + AluY SINE Alu 1 298 -13 2056 110 0 38 chr1 8386791 8387110 -234277243 + AluSx SINE Alu 1 308 0 654 162 80 32 chr1 8387110 8387247 -234277106 + L1M4 LINE L1 5422 5566 -602 1210 305 106 24 chr1 8387247 8388065 -234276288 + L2 LINE L2 2375 3278 -35 269 240 211 10 chr1 8388072 8388176 -234276177 - MIR SINE MIR -62 146 22 2158 104 0 77 chr1 8389592 8389929 -234274424 + AluSx SINE Alu 1 311 -1 281 214 29 68 chr1 8391064 8391167 -234273186 + MIR SINE MIR 45 143 -65 777 128 8 0 chr1 8391550 8391667 -234272686 - FLAM_C SINE Alu -15 118 1 414 280 63 46 chr1 8391679 8391854 -234272499 - MER5A DNA MER1_type -6 183 6 2523 58 0 0 chr1 8393620 8393912 -234270441 - AluY SINE Alu -19 292 1 2290 121 0 0 chr1 8394231 8394529 -234269824 + AluSx SINE Alu 1 298 -14 2572 70 0 13 chr1 8394603 8394918 -234269435 + AluY SINE Alu 1 311 0 215 326 19 74 chr1 8395611 8395696 -234268657 - L2 LINE L2 -506 2808 2720 2077 113 49 0 chr1 8395696 8395980 -234268373 + AluSx SINE Alu 1 298 -14 215 326 19 74 chr1 8395980 8396164 -234268189 - L2 LINE L2 -594 2720 2554 2031 148 0 26 chr1 8397906 8398216 -234266137 - AluSx SINE Alu -9 303 2 2077 131 0 25 chr1 8398267 8398581 -234265772 - AluJo SINE Alu -6 306 1 349 120 0 0 chr1 8398645 8398720 -234265633 - AluSp SINE Alu 0 308 234 1187 141 11 5 chr1 8398720 8398905 -234265448 - AluSp SINE Alu -127 186 1 1137 124 0 30 chr1 8398907 8399098 -234265255 - AluSg/x SINE Alu 0 304 119 2305 99 0 34 chr1 8399110 8399432 -234264921 - AluY SINE Alu 0 311 1 1561 207 17 15 chr1 8399435 8399899 -234264454 - L1M4 LINE L1 -2803 3343 2879 2364 96 0 3 chr1 8399906 8400208 -234264145 - AluSc SINE Alu -7 302 2 2536 66 0 0 chr1 8400209 8400510 -234263843 - AluY SINE Alu -10 301 1 1435 141 52 83 chr1 8400510 8400675 -234263678 - L1MCa LINE L1 -6090 336 184 1736 174 3 10 chr1 8400675 8400973 -234263380 - AluJb SINE Alu -16 296 1 1435 141 52 83 chr1 8400973 8401134 -234263219 - L1MCa LINE L1 -6242 184 20 2436 171 42 40 chr1 8401143 8401669 -234262684 - L1MB5 LINE L1 -41 6133 5607 362 149 0 27 chr1 8401686 8401760 -234262593 + (CCCCCT)n Simple_repeat Simple_repeat 6 77 0 1787 102 0 17 chr1 8401774 8402010 -234262343 - AluSx SINE Alu -32 280 49 268 207 115 23 chr1 8402010 8402086 -234262267 - L1MB5 LINE L1 -553 5621 5535 194 286 0 62 chr1 8402127 8402212 -234262141 - L3 LINE CR1 -352 1225 1147 1619 177 13 33 chr1 8402212 8402517 -234261836 - AluJo SINE Alu -13 299 1 194 286 0 62 chr1 8402517 8402543 -234261810 - L3 LINE CR1 -430 1147 1121 373 200 32 42 chr1 8402572 8402667 -234261686 - FLAM_A SINE Alu -4 129 36 458 338 143 44 chr1 8402797 8403164 -234261189 - L3 LINE CR1 -635 942 520 2480 55 3 29 chr1 8403164 8403474 -234260879 - AluY SINE Alu -9 302 1 458 338 143 44 chr1 8403474 8403559 -234260794 - L3 LINE CR1 -1057 520 445 2140 114 20 3 chr1 8403579 8403885 -234260468 - AluSx SINE Alu -1 311 1 1814 143 7 36 chr1 8403890 8404197 -234260156 - AluJb SINE Alu -14 298 1 2480 81 0 0 chr1 8404403 8404701 -234259652 + AluSp SINE Alu 1 298 -15 2076 142 0 0 chr1 8405260 8405548 -234258805 + AluSx SINE Alu 1 288 -24 2373 94 0 3 chr1 8406556 8406853 -234257500 + AluSx SINE Alu 1 296 -16 213 65 0 0 chr1 8407646 8407677 -234256676 + (TTG)n Simple_repeat Simple_repeat 2 32 0 706 127 8 34 chr1 8407684 8407802 -234256551 - AluSg/x SINE Alu -28 282 168 247 235 26 52 chr1 8407810 8407925 -234256428 - AluSp SINE Alu -108 195 84 1736 148 25 21 chr1 8408240 8408523 -234255830 - AluJb SINE Alu -28 284 1 1431 229 23 12 chr1 8408857 8409202 -234255151 - L2 LINE L2 -562 2752 2404 255 271 0 2 chr1 8409202 8409262 -234255091 + AluSg/x SINE Alu 135 186 -116 * 502 137 0 0 chr1 8409259 8409332 -234255021 - 7SK RNA RNA 0 193 121 736 142 0 16 chr1 8409369 8409496 -234254857 - 7SK RNA RNA -68 125 1 904 158 0 0 chr1 8409496 8409629 -234254724 + FRAM SINE Alu 34 166 -10 548 222 23 34 chr1 8409638 8409814 -234254539 - L2 LINE L2 -928 2386 2213 1319 214 34 34 chr1 8409814 8410137 -234254216 - MLT1B LTR MaLR 0 390 68 1911 164 31 0 chr1 8410761 8411053 -234253300 + AluJb SINE Alu 1 301 -11 2120 112 20 3 chr1 8411102 8411396 -234252957 - AluSg SINE Alu -11 299 1 2118 127 7 0 chr1 8411540 8411863 -234252490 - AluSx SINE Alu 0 325 1 674 200 0 0 chr1 8412143 8412268 -234252085 + FRAM SINE Alu 9 133 -43 507 130 176 0 chr1 8412418 8412526 -234251827 - AluJo SINE Alu -178 134 8 2541 57 0 3 chr1 8412541 8412842 -234251511 - AluSg SINE Alu -10 300 1 21 36 0 0 chr1 8414534 8414562 -234249791 + AT_rich Low_complexity Low_complexity 1 28 0 2334 92 0 16 chr1 8414597 8414900 -234249453 + AluSx SINE Alu 1 298 -14 2506 68 3 0 chr1 8415017 8415313 -234249040 + AluSc SINE Alu 1 297 -12 2090 141 16 0 chr1 8415319 8415624 -234248729 + AluSx SINE Alu 1 310 -2 249 292 299 0 chr1 8415685 8415829 -234248524 - L2 LINE L2 -214 3058 2872 1019 66 8 0 chr1 8416193 8416314 -234248039 + AluY SINE Alu 2 123 -188 1906 49 0 13 chr1 8416330 8416555 -234247798 + AluY SINE Alu 1 222 -89 1822 180 0 0 chr1 8417477 8417766 -234246587 - AluSx SINE Alu -23 289 1 386 311 114 60 chr1 8417771 8417951 -234246402 + L1M4 LINE L1 4607 4776 -1370 1411 113 141 100 chr1 8417951 8418242 -234246111 + AluSg SINE Alu 1 303 -7 1854 148 58 0 chr1 8418242 8418519 -234245834 + AluSx SINE Alu 1 294 -18 386 311 114 60 chr1 8418519 8418932 -234245421 + L1M4 LINE L1 4775 5233 -913 636 129 11 0 chr1 8418945 8419038 -234245315 + AluJb SINE Alu 195 288 -24 1779 170 25 0 chr1 8419142 8419425 -234244928 + AluJb SINE Alu 1 290 -22 2000 147 0 19 chr1 8419731 8420043 -234244310 - AluJo SINE Alu -6 306 1 1784 124 84 7 chr1 8420046 8420188 -234244165 - AluSx SINE Alu -17 295 165 2471 76 3 0 chr1 8420188 8420491 -234243862 - AluY SINE Alu -7 304 1 1784 124 84 7 chr1 8420491 8420622 -234243731 - AluSx SINE Alu -147 165 1 1136 53 0 8 chr1 8420622 8420755 -234243598 - AluY SINE Alu -179 132 1 728 173 15 8 chr1 8420785 8420918 -234243435 + AluJo SINE Alu 3 136 -176 2355 101 3 0 chr1 8421459 8421756 -234242597 - AluSx SINE Alu -14 298 1 2209 123 7 0 chr1 8422146 8422456 -234241897 - AluSx SINE Alu 0 312 1 637 126 0 0 chr1 8422461 8422556 -234241797 - FLAM_C SINE Alu -14 129 35 696 252 31 78 chr1 8423271 8423352 -234241001 + MIR SINE MIR 7 90 -172 2129 130 7 10 chr1 8423352 8423659 -234240694 - AluSx SINE Alu -6 306 1 696 252 31 78 chr1 8423659 8423670 -234240683 + MIR SINE MIR 90 100 -162 1670 189 19 3 chr1 8423670 8423977 -234240376 - AluJb SINE Alu 0 312 1 696 252 31 78 chr1 8423977 8424141 -234240212 + MIR SINE MIR 100 252 -10 216 97 0 0 chr1 8424286 8424317 -234240036 + (TA)n Simple_repeat Simple_repeat 2 32 0 2457 73 0 13 chr1 8424317 8424631 -234239722 - AluY SINE Alu -1 310 1 2595 75 0 0 chr1 8424892 8425200 -234239153 - AluSq SINE Alu -5 308 1 225 342 79 0 chr1 8426069 8426145 -234238208 + MIR SINE MIR 77 158 -104 2295 107 0 0 chr1 8431321 8431612 -234232741 + AluSx SINE Alu 1 291 -21 481 284 98 42 chr1 8431827 8432091 -234232262 + L2 LINE L2 3035 3313 0 2213 124 3 0 chr1 8432209 8432515 -234231838 - AluSx SINE Alu -5 307 1 877 175 0 0 chr1 8432579 8432722 -234231631 + FLAM_C SINE Alu 1 143 0 2668 44 0 25 chr1 8433659 8433975 -234230378 + AluY SINE Alu 1 308 -3 2460 100 0 0 chr1 8434126 8434435 -234229918 + AluSc SINE Alu 1 309 0 2067 147 0 10 chr1 8434443 8434749 -234229604 + AluJb SINE Alu 1 303 -9 2472 70 3 3 chr1 8435125 8435423 -234228930 + AluSp SINE Alu 1 298 -15 669 205 0 0 chr1 8435550 8435667 -234228686 - FLAM_C SINE Alu -25 118 2 2299 96 3 3 chr1 8435806 8436098 -234228255 + AluSp SINE Alu 1 292 -21 415 136 0 0 chr1 8436109 8436175 -234228178 + Alu SINE Alu 236 301 -11 3242 139 20 55 chr1 8436211 8436808 -234227545 - L1MB7 LINE L1 0 6184 5610 2258 103 3 0 chr1 8436808 8437098 -234227255 - AluSx SINE Alu -21 291 1 3242 139 20 55 chr1 8437098 8437154 -234227199 - L1MB7 LINE L1 -574 5610 5554 1773 165 38 3 chr1 8437832 8438123 -234226230 - AluJo SINE Alu -11 301 1 1553 187 0 15 chr1 8438361 8438623 -234225730 - AluJb SINE Alu -54 258 1 2358 92 0 10 chr1 8438628 8438933 -234225420 - AluY SINE Alu -9 302 1 425 147 27 0 chr1 8439142 8439217 -234225136 - MER45A DNA AcHobo 0 178 102 2028 161 0 3 chr1 8439224 8439535 -234224818 - AluSx SINE Alu -2 310 1 231 169 144 144 chr1 8439535 8439569 -234224784 - MER45A DNA AcHobo -60 118 85 2153 124 3 3 chr1 8439569 8439868 -234224485 - AluSx SINE Alu -13 299 1 2412 91 3 7 chr1 8439877 8440186 -234224167 - AluSp SINE Alu -5 308 1 231 169 144 144 chr1 8440186 8440259 -234224094 - MER45A DNA AcHobo -100 78 1 2264 119 0 0 chr1 8440593 8440895 -234223458 - AluY SINE Alu -9 302 1 2169 110 0 0 chr1 8441923 8442242 -234222111 - AluSx SINE Alu 0 312 13 2124 118 3 0 chr1 8442254 8442542 -234221811 - AluSx SINE Alu -13 299 11 222 37 0 0 chr1 8442546 8442573 -234221780 + (CCTG)n Simple_repeat Simple_repeat 2 28 0 698 159 61 12 chr1 8442779 8442942 -234221411 + L1MB7 LINE L1 6004 6174 -10 689 167 9 0 chr1 8443018 8443132 -234221221 + AluJb SINE Alu 2 116 -196 2585 59 10 0 chr1 8443132 8443435 -234220918 - AluY SINE Alu -5 306 1 1855 96 65 55 chr1 8443451 8443595 -234220758 - AluSx SINE Alu -16 296 155 1833 100 0 41 chr1 8443595 8443864 -234220489 - AluSx SINE Alu -11 301 44 1855 96 65 55 chr1 8443864 8444012 -234220341 - AluSx SINE Alu -157 155 1 251 301 142 9 chr1 8444753 8444866 -234219487 + MIR SINE MIR 32 159 -103 2140 137 0 3 chr1 8444866 8445166 -234219187 - AluSx SINE Alu -13 299 1 294 282 168 24 chr1 8446155 8446364 -234217989 - MIR SINE MIR -12 250 12 285 197 127 0 chr1 8447331 8447402 -234216951 + MIR SINE MIR 93 172 -90 2472 70 3 3 chr1 8448277 8448575 -234215778 - AluSp SINE Alu -15 298 1 2058 148 0 10 chr1 8448951 8449256 -234215097 - AluJb SINE Alu -10 302 1 2355 109 3 0 chr1 8449264 8449575 -234214778 - AluSx SINE Alu 0 312 1 245 271 12 59 chr1 8450103 8450188 -234214165 + MIR3 SINE MIR 4 84 -124 533 229 70 75 chr1 8450253 8450369 -234213984 + MIR SINE MIR 46 161 -101 2260 79 11 4 chr1 8450369 8450648 -234213705 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr1 8450651 8450675 -234213678 + (TAA)n Simple_repeat Simple_repeat 3 26 0 533 229 70 75 chr1 8450675 8450755 -234213598 + MIR SINE MIR 163 245 -17 2512 73 0 13 chr1 8450825 8451139 -234213214 + AluY SINE Alu 1 310 -1 2334 112 6 6 chr1 8451144 8451457 -234212896 + AluSp SINE Alu 1 313 0 2175 101 7 32 chr1 8451472 8451780 -234212573 + AluSx SINE Alu 5 304 -8 239 344 86 8 chr1 8451862 8451990 -234212363 - MIR SINE MIR -46 216 79 1868 158 0 24 chr1 8451990 8452287 -234212066 + AluJo SINE Alu 1 290 -22 2208 124 0 0 chr1 8452650 8452940 -234211413 - AluSx SINE Alu -22 290 1 582 250 29 0 chr1 8452947 8453087 -234211266 - MIR SINE MIR -105 157 14 420 219 187 0 chr1 8453432 8453555 -234210798 + MIR SINE MIR 57 202 -60 2287 125 3 0 chr1 8453555 8453860 -234210493 + AluSx SINE Alu 1 306 -6 1232 99 0 29 chr1 8455338 8455538 -234208815 + AluSg/x SINE Alu 127 310 0 654 162 80 32 chr1 8455555 8455569 -234208784 + L1M4 LINE L1 5411 5423 -745 2396 78 0 36 chr1 8455569 8455878 -234208475 + AluY SINE Alu 1 298 -13 2056 110 0 38 chr1 8455878 8456197 -234208156 + AluSx SINE Alu 1 308 0 654 162 80 32 chr1 8456197 8456334 -234208019 + L1M4 LINE L1 5422 5566 -602 1168 304 109 24 chr1 8456334 8457151 -234207202 + L2 LINE L2 2375 3278 -35 269 240 211 10 chr1 8457158 8457262 -234207091 - MIR SINE MIR -62 146 22 2167 104 0 74 chr1 8458677 8459014 -234205339 + AluSx SINE Alu 1 312 0 281 214 29 68 chr1 8460148 8460251 -234204102 + MIR SINE MIR 45 143 -65 766 137 8 0 chr1 8460634 8460751 -234203602 - FLAM_C SINE Alu -15 118 1 414 280 63 46 chr1 8460763 8460938 -234203415 - MER5A DNA MER1_type -6 183 6 2515 58 0 0 chr1 8462703 8462995 -234201358 - AluY SINE Alu -19 292 1 2290 121 0 0 chr1 8463314 8463612 -234200741 + AluSx SINE Alu 1 298 -14 2572 70 0 13 chr1 8463686 8464001 -234200352 + AluY SINE Alu 1 311 0 215 326 19 74 chr1 8464693 8464778 -234199575 - L2 LINE L2 -506 2808 2720 2077 113 49 0 chr1 8464778 8465062 -234199291 + AluSx SINE Alu 1 298 -14 215 326 19 74 chr1 8465062 8465246 -234199107 - L2 LINE L2 -594 2720 2554 2031 148 0 26 chr1 8466990 8467300 -234197053 - AluSx SINE Alu -9 303 2 2077 131 0 25 chr1 8467351 8467665 -234196688 - AluJo SINE Alu -6 306 1 349 120 0 0 chr1 8467729 8467804 -234196549 - AluSx SINE Alu 0 308 234 1362 140 0 0 chr1 8467804 8467990 -234196363 - AluSx SINE Alu -126 186 1 225 342 79 0 chr1 8468858 8468934 -234195419 + MIR SINE MIR 77 158 -104 343 275 167 28 chr1 8472020 8472108 -234192245 + L2 LINE L2 2607 2681 -633 1681 139 0 16 chr1 8472108 8472366 -234191987 - AluJo SINE Alu -21 291 38 343 275 167 28 chr1 8472366 8472601 -234191752 + L2 LINE L2 2681 2975 -339 1501 174 34 19 chr1 8472652 8472916 -234191437 - AluJo SINE Alu -41 271 4 2151 135 3 3 chr1 8474699 8475011 -234189342 + AluSx SINE Alu 1 312 0 438 20 0 0 chr1 8475206 8475257 -234189096 + (CA)n Simple_repeat Simple_repeat 2 52 0 2307 92 0 3 chr1 8477283 8477575 -234186778 + AluSg SINE Alu 2 292 -18 24 0 0 0 chr1 8478270 8478294 -234186059 + AT_rich Low_complexity Low_complexity 1 24 0 5210 65 7 7 chr1 8478332 8479036 -234185317 - L1PA8 LINE L1 -3 6169 5466 210 197 0 0 chr1 8479058 8479103 -234185250 - MIR SINE MIR -52 156 111 255 316 68 8 chr1 8479156 8479273 -234185080 + MIR3 SINE MIR 45 168 -40 666 167 78 111 chr1 8479302 8479402 -234184951 + MER45A DNA AcHobo 2 104 -1477 1732 180 42 0 chr1 8479402 8479691 -234184662 - AluJo SINE Alu -11 301 1 2445 87 3 3 chr1 8479697 8480006 -234184347 - AluSq SINE Alu -4 309 1 666 167 78 111 chr1 8480006 8480078 -234184275 + MER45A DNA AcHobo 109 175 -3 224 279 154 22 chr1 8480604 8480740 -234183613 - L2 LINE L2 -9 3263 3110 207 289 18 53 chr1 8482295 8482409 -234181944 + G-rich Low_complexity Low_complexity 2 111 0 400 298 183 30 chr1 8483356 8483695 -234180658 - L2 LINE L2 -579 2735 2345 394 206 84 38 chr1 8483672 8483803 -234180550 + MIR SINE MIR 71 207 -55 * 1421 161 5 0 chr1 8483814 8484025 -234180328 + AluJb SINE Alu 87 298 -14 2158 107 41 0 chr1 8484027 8484318 -234180035 + AluSp SINE Alu 1 303 -10 231 227 0 0 chr1 8484333 8484377 -234179976 + MIR SINE MIR 218 261 -1 758 211 47 26 chr1 8484635 8484825 -234179528 - MER20 DNA MER1_type -25 194 1 202 304 157 44 chr1 8484854 8485065 -234179288 - MIR3 SINE MIR -24 238 1 522 254 71 3 chr1 8485581 8485750 -234178603 - MIR SINE MIR -63 145 13 2186 106 41 0 chr1 8485800 8486092 -234178261 + AluSc SINE Alu 1 304 -5 390 149 14 14 chr1 8486200 8486274 -234178079 - AluSg/x SINE Alu -12 290 217 497 213 39 8 chr1 8486405 8486532 -234177821 - AluSq/x SINE Alu -181 131 1 859 107 47 54 chr1 8486555 8486704 -234177649 + AluJb SINE Alu 1 148 -164 1916 66 125 15 chr1 8486704 8486976 -234177377 + AluSg SINE Alu 1 302 -8 473 171 152 0 chr1 8487670 8487775 -234176578 + MER20 DNA MER1_type 3 123 -96 231 272 168 8 chr1 8487866 8487991 -234176362 + L2 LINE L2 2908 3052 -220 676 207 0 0 chr1 8490065 8490186 -234174167 + AluJo/FLAM SINE Alu 2 122 -190 1143 114 0 45 chr1 8490186 8490362 -234173991 - AluSg/x SINE Alu 0 310 143 1929 178 0 0 chr1 8490479 8490788 -234173565 - AluSx SINE Alu -3 309 1 386 311 114 60 chr1 8490793 8490973 -234173380 + L1M4 LINE L1 4607 4776 -1370 1401 114 137 107 chr1 8490973 8491272 -234173081 + AluSg SINE Alu 1 308 -2 1854 148 58 0 chr1 8491272 8491549 -234172804 + AluSx SINE Alu 1 294 -18 386 311 114 60 chr1 8491549 8491962 -234172391 + L1M4 LINE L1 4775 5233 -913 636 129 11 0 chr1 8491975 8492068 -234172285 + AluJb SINE Alu 195 288 -24 1779 170 25 0 chr1 8492172 8492455 -234171898 + AluJb SINE Alu 1 290 -22 2026 148 0 16 chr1 8492761 8493071 -234171282 - AluJo SINE Alu -7 305 1 1762 128 84 7 chr1 8493074 8493216 -234171137 - AluSx SINE Alu -17 295 165 2471 76 3 0 chr1 8493216 8493519 -234170834 - AluY SINE Alu -7 304 1 1762 128 84 7 chr1 8493519 8493650 -234170703 - AluSx SINE Alu -147 165 1 1136 53 0 8 chr1 8493650 8493783 -234170570 - AluY SINE Alu -179 132 1 728 173 15 8 chr1 8493813 8493946 -234170407 + AluJo SINE Alu 3 136 -176 2346 101 3 0 chr1 8494487 8494783 -234169570 - AluSx SINE Alu -15 297 1 2192 126 7 0 chr1 8495173 8495483 -234168870 - AluSx SINE Alu 0 312 1 637 126 0 0 chr1 8495488 8495583 -234168770 - FLAM_C SINE Alu -14 129 35 718 249 31 74 chr1 8496298 8496379 -234167974 + MIR SINE MIR 7 90 -172 2158 127 7 10 chr1 8496379 8496686 -234167667 - AluSx SINE Alu -6 306 1 1813 187 10 3 chr1 8496696 8497006 -234167347 - AluJb SINE Alu 0 312 1 718 249 31 74 chr1 8497006 8497170 -234167183 + MIR SINE MIR 99 252 -10 231 114 0 0 chr1 8497315 8497350 -234167003 + (TA)n Simple_repeat Simple_repeat 1 35 0 2383 75 0 13 chr1 8497350 8497655 -234166698 - AluY SINE Alu -10 301 1 2463 60 0 80 chr1 8497916 8498252 -234166101 - AluSq SINE Alu -4 309 1 2186 108 0 20 chr1 8498264 8498569 -234165784 - AluSq SINE Alu -14 299 1 1228 163 8 67 chr1 8498980 8499060 -234165293 + AluJo SINE Alu 63 146 -166 2400 82 3 10 chr1 8499060 8499388 -234164965 + AluY SINE Alu 1 311 0 1228 163 8 67 chr1 8499388 8499547 -234164806 + AluJo SINE Alu 146 288 -24 2190 92 7 3 chr1 8499603 8499909 -234164444 + AluSq SINE Alu 1 307 0 507 241 152 7 chr1 8500644 8500789 -234163564 - MIR3 SINE MIR -11 197 32 2909 138 23 32 chr1 8501422 8501728 -234162625 - L1MB5 LINE L1 -3 6171 5871 2049 125 44 7 chr1 8501728 8502024 -234162329 - AluSq SINE Alu -4 309 3 2909 138 23 32 chr1 8502024 8502273 -234162080 - L1MB5 LINE L1 -303 5871 5621 2216 91 14 11 chr1 8502273 8502590 -234161763 - AluSp SINE Alu 0 318 1 2125 119 31 0 chr1 8502647 8502941 -234161412 + AluSg SINE Alu 1 303 -7 1692 168 31 3 chr1 8503020 8503306 -234161047 + AluSx SINE Alu 2 295 -17 417 271 43 15 chr1 8503450 8503623 -234160730 + MIR SINE MIR 42 213 -49 2451 64 27 0 chr1 8504434 8504729 -234159624 + AluY SINE Alu 1 303 -8 2254 100 4 0 chr1 8504736 8505016 -234159337 + AluSg SINE Alu 9 289 -21 23 0 0 0 chr1 8505183 8505206 -234159147 + AT_rich Low_complexity Low_complexity 1 23 0 2012 67 49 53 chr1 8505278 8505585 -234158768 - AluSp SINE Alu 0 308 3 276 170 0 19 chr1 8505910 8505963 -234158390 + AluJb SINE Alu 85 136 -166 2325 84 0 0 chr1 8505963 8506277 -234158076 + AluY SINE Alu 1 314 0 1079 76 0 0 chr1 8506432 8506563 -234157790 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 8506566 8506874 -234157479 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 8506894 8506916 -234157437 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 8506989 8507097 -234157256 + FLAM_A SINE Alu 35 142 0 2000 127 48 3 chr1 8507106 8507397 -234156956 + AluSx SINE Alu 1 304 -8 2250 119 0 3 chr1 8508508 8508810 -234155543 + AluSx SINE Alu 1 301 -11 899 175 121 0 chr1 8508810 8508976 -234155377 + AluYb8 SINE Alu 1 186 -132 2228 119 3 7 chr1 8511000 8511302 -234153051 - AluSx SINE Alu -6 306 6 276 170 0 19 chr1 8511629 8511682 -234152671 + AluJb SINE Alu 85 136 -166 2439 93 0 0 chr1 8511682 8511992 -234152361 + AluY SINE Alu 1 310 -1 1079 76 0 0 chr1 8512150 8512281 -234152072 + AluSg1 SINE Alu 1 131 -178 2261 120 3 0 chr1 8512284 8512592 -234151761 + AluSx SINE Alu 1 309 -3 22 0 0 0 chr1 8512612 8512634 -234151719 + AT_rich Low_complexity Low_complexity 1 22 0 668 139 0 0 chr1 8512707 8512815 -234151538 + FLAM_A SINE Alu 35 142 0 1985 131 48 3 chr1 8512826 8513117 -234151236 + AluSx SINE Alu 1 304 -8 2250 119 0 3 chr1 8514228 8514530 -234149823 + AluSx SINE Alu 1 301 -11 2074 115 0 36 chr1 8514530 8514644 -234149709 + AluSc SINE Alu 1 118 -191 2356 74 0 27 chr1 8514644 8514941 -234149412 + AluSc SINE Alu 1 289 -20 2074 115 0 36 chr1 8514941 8515131 -234149222 + AluSc SINE Alu 118 294 -15 1780 153 0 80 chr1 8515275 8515601 -234148752 + AluJb SINE Alu 1 300 -12 1752 148 3 68 chr1 8515985 8516115 -234148238 + AluSx SINE Alu 7 144 -168 2397 89 3 3 chr1 8516115 8516417 -234147936 + AluSx SINE Alu 1 302 -10 1752 148 3 68 chr1 8516417 8516610 -234147743 + AluSx SINE Alu 144 309 -3 972 154 49 6 chr1 8516610 8516772 -234147581 + AluSq SINE Alu 134 302 -11 2506 46 0 0 chr1 8516944 8517266 -234147087 - AluY SINE Alu 0 322 1 201 158 0 0 chr1 8517455 8517493 -234146860 + A-rich Low_complexity Low_complexity 1 38 0 242 127 0 175 chr1 8517493 8517556 -234146797 + MLT1H LTR MaLR 498 549 0 574 346 72 33 chr1 8517559 8518163 -234146190 + L2 LINE L2 2650 3270 -2 1045 175 0 0 chr1 8518524 8518690 -234145663 + AluJb SINE Alu 134 299 -13 2311 106 6 3 chr1 8518732 8519043 -234145310 + AluSx SINE Alu 1 312 0 327 146 0 0 chr1 8519427 8519482 -234144871 + (TC)n Simple_repeat Simple_repeat 2 56 0 2183 90 11 4 chr1 8519979 8520281 -234144072 - AluSg SINE Alu 0 304 1 29 0 0 0 chr1 8520283 8520312 -234144041 + AT_rich Low_complexity Low_complexity 1 29 0 1325 134 15 0 chr1 8520332 8520534 -234143819 - AluSg/x SINE Alu -3 309 105 1243 138 5 5 chr1 8520640 8520829 -234143524 + AluSg/x SINE Alu 112 300 -12 1355 191 7 28 chr1 8521870 8521988 -234142365 + AluJb SINE Alu 21 140 -172 2201 120 0 13 chr1 8521988 8522288 -234142065 + AluSx SINE Alu 1 296 -16 1355 191 7 28 chr1 8522288 8522452 -234141901 + AluJb SINE Alu 140 297 -15 2347 109 6 3 chr1 8522554 8522865 -234141488 + AluSx SINE Alu 1 312 0 2197 113 3 3 chr1 8522927 8523220 -234141133 + AluSx SINE Alu 7 299 -13 967 320 106 18 chr1 8523576 8524132 -234140221 - L2 LINE L2 -338 2976 2372 2263 62 11 0 chr1 8524137 8524413 -234139940 - AluSp SINE Alu -9 304 26 285 270 0 20 chr1 8525073 8525173 -234139180 + MLT1H LTR MaLR 368 465 -84 3503 85 4 2 chr1 8525424 8525895 -234138458 + LTR8 LTR ERV1 1 472 -219 8223 42 4 1 chr1 8525995 8527058 -234137295 - L1P LINE L1 -794 5352 4287 696 332 174 31 chr1 8527553 8528370 -234135983 + L3 LINE CR1 211 1144 -433 354 329 55 24 chr1 8528679 8528843 -234135510 - L1M LINE L1 -2385 5423 5255 335 264 127 10 chr1 8529065 8529262 -234135091 - L1M4 LINE L1 -1437 4709 4490 2028 128 0 24 chr1 8529752 8530048 -234134305 + AluSx SINE Alu 1 289 -23 253 191 191 0 chr1 8530876 8530960 -234133393 + MIR3 SINE MIR 108 207 -1 410 179 51 90 chr1 8533607 8533763 -234130590 - MER97b DNA MER1_type? -903 150 1 2230 121 52 100 chr1 8533929 8534391 -234129962 + Tigger3(Golem) DNA MER2_type 2577 3016 -13 266 203 34 0 chr1 8534401 8534460 -234129893 + LTR67 LTR ERVL 114 174 -383 1440 151 95 48 chr1 8534469 8534827 -234129526 - THE1C LTR MaLR 0 375 1 286 228 43 11 chr1 8535002 8535094 -234129259 + LTR67 LTR ERVL 439 533 -24 1694 117 117 0 chr1 8536386 8536516 -234127837 + AluSx SINE Alu 1 114 -198 1992 153 0 0 chr1 8536516 8536804 -234127549 + AluSg SINE Alu 9 296 -14 1694 117 117 0 chr1 8536804 8536922 -234127431 + AluSx SINE Alu 114 278 -34 660 195 17 0 chr1 8536926 8537100 -234127253 + GA-rich Low_complexity Low_complexity 4 180 0 273 167 0 21 chr1 8537228 8537276 -234127077 - Alu SINE Alu -252 48 2 2172 122 0 20 chr1 8537402 8537705 -234126648 - AluSx SINE Alu -15 297 1 1001 132 38 0 chr1 8538452 8538611 -234125742 - Tigger4(Zombi) DNA MER2_type -2566 165 1 2385 93 3 0 chr1 8538991 8539293 -234125060 - AluSp SINE Alu -10 303 1 2325 102 0 0 chr1 8540275 8540568 -234123785 + AluSx SINE Alu 1 293 -19 283 218 0 0 chr1 8540726 8540781 -234123572 + Tigger5 DNA MER2_type 3 57 -2266 822 168 0 0 chr1 8540848 8540973 -234123380 + FLAM_C SINE Alu 2 126 -7 2078 136 0 17 chr1 8540988 8541124 -234123229 + AluSx SINE Alu 1 138 -164 2348 94 0 16 chr1 8541124 8541261 -234123092 + AluSq SINE Alu 1 139 -174 2363 112 0 0 chr1 8541261 8541573 -234122780 + AluSq SINE Alu 1 312 -1 2348 94 0 16 chr1 8541573 8541744 -234122609 + AluSq SINE Alu 139 304 -9 2078 136 0 17 chr1 8541744 8541909 -234122444 + AluSx SINE Alu 138 297 -5 785 203 26 0 chr1 8541916 8542069 -234122284 + FRAM SINE Alu 5 161 -5 1173 208 32 70 chr1 8542544 8542857 -234121496 - AluSx SINE Alu 0 302 2 792 180 66 28 chr1 8543027 8543238 -234121115 - MER20 DNA MER1_type 0 219 1 1859 136 3 42 chr1 8543444 8543752 -234120601 + AluJb SINE Alu 1 296 -16 2463 88 0 19 chr1 8543910 8544228 -234120125 + AluSq SINE Alu 1 312 -1 257 343 59 29 chr1 8544787 8544889 -234119464 - L2 LINE L2 -42 3271 3167 2479 49 3 0 chr1 8544953 8545239 -234119114 - AluY SINE Alu -11 300 14 3317 145 35 88 chr1 8545269 8545524 -234118829 - L1MB3 LINE L1 0 6183 5916 1953 162 0 3 chr1 8545524 8545827 -234118526 + AluJb SINE Alu 1 302 -10 3317 145 35 88 chr1 8545827 8545840 -234118513 - L1MB3 LINE L1 -267 5916 5904 2123 128 17 0 chr1 8545840 8546128 -234118225 + AluSx SINE Alu 1 293 -19 2542 62 0 3 chr1 8546137 8546445 -234117908 + AluY SINE Alu 1 307 -4 3317 145 35 88 chr1 8546445 8546937 -234117416 - L1MB3 LINE L1 -287 5896 5453 348 266 66 49 chr1 8546985 8547211 -234117142 - L1MC5 LINE L1 -50 7911 7682 1964 162 3 3 chr1 8547248 8547556 -234116797 + AluJb SINE Alu 1 308 -4 225 188 47 47 chr1 8547556 8547632 -234116721 - L1MC5 LINE L1 -272 7689 7611 823 249 80 10 chr1 8547793 8548094 -234116259 - L1M4 LINE L1 -2096 4050 3729 2196 54 4 36 chr1 8548403 8548681 -234115672 + AluY SINE Alu 1 269 -42 531 138 0 129 chr1 8648841 8648886 -234015467 - L1MB5 LINE L1 0 6174 6125 243 0 0 0 chr1 8648886 8648913 -234015440 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 2225 101 0 3 chr1 8648913 8649199 -234015154 - AluSq SINE Alu -28 285 1 531 138 0 129 chr1 8649199 8649268 -234015085 - L1MB5 LINE L1 -47 6127 6074 1898 125 0 83 chr1 8649300 8649612 -234014741 - AluSx SINE Alu -26 286 1 2021 143 3 3 chr1 8649968 8650275 -234014078 + AluSx SINE Alu 1 307 -5 1267 131 63 0 chr1 8651254 8651445 -234012908 + AluSg/x SINE Alu 93 295 -17 295 271 16 49 chr1 8651476 8651507 -234012846 + L1MC4 LINE L1 7924 7954 -88 2411 84 0 3 chr1 8651507 8651805 -234012548 + AluY SINE Alu 1 297 -14 295 271 16 49 chr1 8651805 8651895 -234012458 + L1MC4 LINE L1 7954 8041 -1 2210 120 0 16 chr1 8652246 8652563 -234011790 + AluSx SINE Alu 1 312 0 489 49 0 0 chr1 8653404 8653465 -234010888 - AluY SINE Alu -256 62 2 412 156 46 0 chr1 8653798 8653907 -234010446 + (TG)n Simple_repeat Simple_repeat 2 115 0 835 254 95 13 chr1 8654142 8654374 -234009979 + MLT1G1 LTR MaLR 2 252 -343 356 202 11 34 chr1 8654379 8654468 -234009885 + MLT1H LTR MaLR 463 549 0 849 257 108 33 chr1 8654497 8654975 -234009378 - L2 LINE L2 -19 3294 2779 802 168 0 126 chr1 8654980 8655170 -234009183 - FRAM SINE Alu 0 166 1 2046 114 13 25 chr1 8655193 8655508 -234008845 - AluSq SINE Alu -1 312 2 950 173 6 6 chr1 8655511 8655667 -234008686 - AluJb SINE Alu -22 290 135 2522 92 0 6 chr1 8655673 8655987 -234008366 - AluSx SINE Alu 0 312 1 1179 239 86 35 chr1 8655990 8656178 -234008175 - L2 LINE L2 -608 2706 2529 2293 101 0 0 chr1 8656178 8656474 -234007879 - AluSx SINE Alu -16 296 1 1179 239 86 35 chr1 8656474 8656741 -234007612 - L2 LINE L2 -785 2529 2228 184 236 67 34 chr1 8656981 8657022 -234007331 + MIR SINE MIR 159 197 -65 2615 54 0 0 chr1 8657022 8657319 -234007034 + AluY SINE Alu 1 297 -14 184 236 67 34 chr1 8657319 8657366 -234006987 + MIR SINE MIR 197 250 -12 2115 116 3 44 chr1 8657472 8657791 -234006562 + AluSx SINE Alu 1 306 -6 2256 104 0 0 chr1 8658589 8658878 -234005475 - AluSq SINE Alu -24 289 1 363 98 0 0 chr1 8658882 8658943 -234005410 + (TA)n Simple_repeat Simple_repeat 1 61 0 2300 79 10 3 chr1 8658943 8659235 -234005118 - AluSx SINE Alu -18 294 1 419 288 45 8 chr1 8662777 8662909 -234001444 + MIR SINE MIR 34 170 -92 240 167 71 0 chr1 8663160 8663202 -234001151 + MSTB LTR MaLR 382 426 0 3664 163 20 97 chr1 8663202 8663284 -234001069 + L1MB4 LINE L1 5221 5308 -872 2440 89 0 13 chr1 8663284 8663597 -234000756 + AluSc SINE Alu 1 309 0 3664 163 20 97 chr1 8663597 8664546 -233999807 + L1MB4 LINE L1 5308 6180 0 2510 45 0 0 chr1 8664670 8665001 -233999352 - AluY SINE Alu 0 311 1 2441 43 0 0 chr1 8665364 8665644 -233998709 - AluY SINE Alu -31 280 1 189 0 0 0 chr1 8665705 8665726 -233998627 + (A)n Simple_repeat Simple_repeat 1 21 0 2487 59 0 3 chr1 8666327 8666631 -233997722 - AluSq SINE Alu -10 303 1 2134 104 3 0 chr1 8666637 8666936 -233997417 - AluSg SINE Alu -10 300 1 2365 37 7 13 chr1 8667555 8667853 -233996500 - AluY SINE Alu -15 296 1 1650 159 97 0 chr1 8667955 8668245 -233996108 - MER7A DNA MER2_type -29 317 2 772 273 30 0 chr1 8668524 8668722 -233995631 + MIR SINE MIR 6 209 -53 207 100 0 0 chr1 8669138 8669168 -233995185 + (CTTA)n Simple_repeat Simple_repeat 2 31 0 2048 105 0 3 chr1 8669168 8669443 -233994910 - AluSg SINE Alu -27 283 8 749 169 70 7 chr1 8669443 8669585 -233994768 - AluJb SINE Alu -25 287 137 2011 116 20 0 chr1 8671024 8671317 -233993036 - AluSx SINE Alu -13 299 1 2425 68 0 0 chr1 8672130 8672438 -233991915 - AluY SINE Alu -2 309 2 2226 87 7 0 chr1 8673162 8673460 -233990893 + AluSc SINE Alu 2 301 -8 2166 74 11 0 chr1 8673575 8673892 -233990461 - AluSp SINE Alu 0 320 1 2055 119 0 14 chr1 8673909 8674067 -233990286 - AluSx SINE Alu -21 291 137 2153 109 0 10 chr1 8674067 8674078 -233990275 - AluSx SINE Alu -3 309 299 270 0 0 0 chr1 8674078 8674108 -233990245 + (TG)n Simple_repeat Simple_repeat 1 30 0 2153 109 0 10 chr1 8674108 8674408 -233989945 - AluSx SINE Alu -13 299 1 2055 119 0 14 chr1 8674408 8674544 -233989809 - AluSx SINE Alu -175 137 1 1587 268 199 11 chr1 8675109 8676011 -233988342 - L2 LINE L2 -55 3258 2179 293 302 19 99 chr1 8676011 8676227 -233988126 + MER20B DNA MER1_type 19 218 -1 266 222 81 30 chr1 8676228 8676327 -233988026 - L2 LINE L2 -1131 2183 2080 741 200 7 7 chr1 8676536 8676676 -233987677 + FRAM SINE Alu 1 140 -36 2061 124 0 22 chr1 8676676 8676991 -233987362 - AluSx SINE Alu -4 308 1 32 33 0 33 chr1 8677004 8677023 -233987330 + AT_rich Low_complexity Low_complexity 1 19 -40 1405 130 188 0 chr1 8677023 8677286 -233987067 + AluSx SINE Alu 1 308 0 32 33 0 33 chr1 8677286 8677326 -233987027 + AT_rich Low_complexity Low_complexity 19 59 0 2205 85 0 3 chr1 8677367 8677662 -233986691 - AluSc SINE Alu -15 294 1 726 143 0 0 chr1 8677676 8677781 -233986572 - U6 snRNA snRNA -1 106 2 811 179 21 74 chr1 8677782 8677972 -233986381 + AluJo SINE Alu 102 281 -31 32 43 0 0 chr1 8677972 8678018 -233986335 + AT_rich Low_complexity Low_complexity 1 46 0 1399 96 50 29 chr1 8678187 8678427 -233985926 + L1PA16 LINE L1 5922 6166 0 1846 120 0 18 chr1 8678444 8678579 -233985774 + AluSq SINE Alu 3 139 -174 2142 108 0 0 chr1 8678579 8678884 -233985469 + AluY SINE Alu 3 307 -4 1846 120 0 18 chr1 8678884 8679031 -233985322 + AluSq SINE Alu 139 280 -33 531 247 74 11 chr1 8679041 8679231 -233985122 - L1MEd LINE L1 -5016 1103 902 1942 143 7 0 chr1 8679231 8679545 -233984808 - AluSx SINE Alu 0 316 1 1949 122 37 3 chr1 8679556 8679852 -233984501 - AluSx SINE Alu -4 308 3 1960 133 3 0 chr1 8680233 8680527 -233983826 + AluSx SINE Alu 1 295 -17 784 124 0 0 chr1 8680987 8681100 -233983253 + AluSg/x SINE Alu 183 295 -17 1175 128 0 15 chr1 8681101 8681296 -233983057 + AluSq SINE Alu 122 313 0 1898 138 14 0 chr1 8682324 8682614 -233981739 - AluJo SINE Alu -18 294 1 2191 41 0 44 chr1 8683571 8683888 -233980465 - AluY SINE Alu 0 304 1 2305 93 0 3 chr1 8684241 8684552 -233979801 - AluSx SINE Alu -2 310 1 2101 90 4 0 chr1 8685480 8685777 -233978576 - AluSc SINE Alu 0 302 5 1420 159 10 68 chr1 8685782 8685958 -233978395 - AluJb SINE Alu -11 301 149 1941 123 3 20 chr1 8685958 8686250 -233978103 + AluSx SINE Alu 1 287 -25 1420 159 10 68 chr1 8686250 8686381 -233977972 - AluJb SINE Alu -163 149 12 1743 160 0 0 chr1 8686761 8687049 -233977304 + AluJb SINE Alu 23 310 -2 2065 113 0 22 chr1 8687227 8687538 -233976815 - AluSx SINE Alu -8 304 1 565 238 225 0 chr1 8687822 8687982 -233976371 + MIR SINE MIR 67 262 0 273 75 0 0 chr1 8688154 8688194 -233976159 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 0 0 0 chr1 8688193 8688214 -233976139 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 413 213 57 41 chr1 8688291 8688413 -233975940 - L1ME4a LINE L1 -22 6099 5976 1977 120 0 13 chr1 8688422 8688723 -233975630 - AluSq SINE Alu -16 297 1 230 272 140 0 chr1 8688730 8688844 -233975509 - L1ME4a LINE L1 -376 5745 5616 241 191 0 0 chr1 8688847 8688889 -233975464 + LTR50 LTR ERVL 7 48 -747 1408 126 39 9 chr1 8688906 8689005 -233975348 - AluSx SINE Alu -75 237 142 2076 99 0 14 chr1 8689005 8689185 -233975168 - AluSc SINE Alu 0 311 135 2188 86 7 0 chr1 8689185 8689477 -233974876 - AluSp SINE Alu -19 294 1 2076 99 0 14 chr1 8689477 8689611 -233974742 - AluSc SINE Alu -176 135 1 1408 126 39 9 chr1 8689611 8689740 -233974613 - AluSx SINE Alu -170 142 1 1710 156 54 0 chr1 8689760 8690055 -233974298 - AluJo SINE Alu -1 311 1 383 275 111 2 chr1 8690153 8690498 -233973855 + LTR50 LTR ERVL 108 654 -141 1993 120 3 3 chr1 8690499 8690799 -233973554 - AluSx SINE Alu -12 300 1 300 280 27 0 chr1 8690801 8690876 -233973477 - L1ME4a LINE L1 -506 5615 5539 1856 96 25 32 chr1 8691018 8691336 -233973017 - AluSg SINE Alu 0 318 3 189 138 0 0 chr1 8691337 8691366 -233972987 - MER5A DNA MER1_type -111 78 50 2469 44 0 7 chr1 8692138 8692435 -233971918 - AluY SINE Alu -16 295 1 2198 101 0 3 chr1 8692437 8692735 -233971618 - AluSc SINE Alu -12 297 1 401 127 0 0 chr1 8693102 8693157 -233971196 - AluSp/q SINE Alu -38 265 211 518 205 137 0 chr1 8693359 8693476 -233970877 - AluJo SINE Alu -178 134 2 1887 144 0 22 chr1 8694376 8694695 -233969658 - AluSx SINE Alu 0 312 1 207 0 0 0 chr1 8694747 8694770 -233969583 + (G)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr1 8695169 8695199 -233969154 + AT_rich Low_complexity Low_complexity 1 30 0 2002 106 0 17 chr1 8695592 8695885 -233968468 - AluSx SINE Alu -19 293 6 193 328 62 0 chr1 8696468 8696532 -233967821 + MIR SINE MIR 37 104 -158 2179 114 0 0 chr1 8696620 8696928 -233967425 - AluSx SINE Alu -3 309 2 2197 53 0 11 chr1 8697471 8697755 -233966598 - AluY SINE Alu -2 309 29 673 219 0 71 chr1 8698219 8698329 -233966024 + MER104 DNA Tc2 5 98 -1800 2119 117 3 3 chr1 8698329 8698637 -233965716 - AluSg SINE Alu -2 308 1 673 219 0 71 chr1 8698637 8698709 -233965644 + MER104 DNA Tc2 98 174 -6 347 229 53 61 chr1 8698852 8698983 -233965370 + L2 LINE L2 2934 3063 -250 1581 157 79 140 chr1 8699406 8699670 -233964683 + MLT1D LTR MaLR 1 280 -225 1750 154 13 0 chr1 8699670 8699968 -233964385 - AluSx SINE Alu -10 302 1 1590 148 19 11 chr1 8699968 8700238 -233964115 - AluSx SINE Alu -13 299 28 1581 157 79 140 chr1 8700238 8700412 -233963941 + MLT1D LTR MaLR 279 404 -101 2088 90 14 0 chr1 8700412 8700700 -233963653 - AluSx SINE Alu -20 292 1 1581 157 79 140 chr1 8700700 8700793 -233963560 + MLT1D LTR MaLR 404 501 -4 1722 183 109 10 chr1 8701514 8701948 -233962405 - MLT1D LTR MaLR -5 462 1 394 332 31 38 chr1 8701978 8702267 -233962086 + ERVL LTR ERVL 1025 1311 -4453 1004 269 86 15 chr1 8702521 8703057 -233961296 + L1M4 LINE L1 2512 3085 -3061 1989 90 29 42 chr1 8703070 8703381 -233960972 + AluSp SINE Alu 1 307 -6 1479 268 154 29 chr1 8703395 8703676 -233960677 + L1M4 LINE L1 3316 3560 -2586 2005 116 27 3 chr1 8703676 8703977 -233960376 - AluSx SINE Alu -4 308 1 1479 268 154 29 chr1 8703977 8704557 -233959796 + L1M4 LINE L1 3560 4285 -1861 2294 88 0 16 chr1 8704557 8704694 -233959659 + AluSx SINE Alu 1 139 -173 2140 102 7 0 chr1 8704694 8704989 -233959364 + AluY SINE Alu 1 297 -14 2294 88 0 16 chr1 8704989 8705168 -233959185 + AluSx SINE Alu 139 312 0 1432 279 59 36 chr1 8705211 8705734 -233958619 + ERVL LTR ERVL 4745 5279 -485 1826 131 3 7 chr1 8706139 8706453 -233957900 - AluSx SINE Alu 0 313 1 1541 161 16 48 chr1 8706589 8706900 -233957453 - AluJo SINE Alu -11 301 1 370 325 99 29 chr1 8706988 8707231 -233957122 - L1ME LINE L1 -316 5805 5546 2066 112 3 0 chr1 8707340 8707635 -233956718 - AluSg SINE Alu -14 296 1 1030 90 0 0 chr1 8707635 8707768 -233956585 - AluSg SINE Alu -177 133 1 790 154 32 0 chr1 8708149 8708272 -233956081 - AluSx SINE Alu -22 288 162 500 141 0 0 chr1 8708270 8708341 -233956012 - AluSx SINE Alu -240 72 2 * 242 288 14 14 chr1 8708565 8708638 -233955715 - MIR SINE MIR -65 143 71 1677 176 3 16 chr1 8708652 8708964 -233955389 - AluJo SINE Alu -2 310 3 953 114 0 0 chr1 8708969 8709101 -233955252 - FLAM_C SINE Alu -11 132 1 552 272 251 5 chr1 8709270 8709465 -233954888 - MIR SINE MIR 0 262 20 884 245 169 46 chr1 8709797 8710210 -233954143 + L2 LINE L2 2850 3313 0 1916 110 20 37 chr1 8710585 8710757 -233953596 - AluSc SINE Alu -14 295 129 1800 81 16 12 chr1 8710757 8711015 -233953338 - AluSq SINE Alu -10 303 45 1916 110 20 37 chr1 8711015 8711142 -233953211 - AluSc SINE Alu -180 129 1 2100 99 0 26 chr1 8711233 8711535 -233952818 - AluSx SINE Alu -18 294 1 2119 83 0 23 chr1 8712349 8712649 -233951704 + AluSx SINE Alu 1 293 -19 299 280 126 40 chr1 8712813 8712988 -233951365 - L2 LINE L2 -297 3016 2827 259 179 39 26 chr1 8712993 8713071 -233951282 + (TG)n Simple_repeat Simple_repeat 1 79 0 389 214 0 12 chr1 8713073 8713157 -233951196 - L2 LINE L2 -504 2810 2728 441 0 0 0 chr1 8713172 8713221 -233951132 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 104 21 0 chr1 8713222 8713270 -233951083 + (GA)n Simple_repeat Simple_repeat 2 50 0 759 221 7 0 chr1 8713270 8713415 -233950938 - FRAM SINE Alu -30 146 1 751 92 151 0 chr1 8713745 8713864 -233950489 - L1PA14 LINE L1 -1 6160 6024 619 98 0 0 chr1 8714268 8714350 -233950003 + AluS SINE Alu 2 83 -230 1927 104 0 0 chr1 8714350 8714609 -233949744 + AluSx SINE Alu 36 294 -18 222 298 48 48 chr1 8715073 8715177 -233949176 + MIR SINE MIR 159 262 0 219 69 0 0 chr1 8716090 8716119 -233948234 + (CA)n Simple_repeat Simple_repeat 1 29 0 2379 112 0 0 chr1 8716388 8716701 -233947652 + AluSq SINE Alu 1 313 0 312 178 0 0 chr1 8716917 8716990 -233947363 + (CAT)n Simple_repeat Simple_repeat 2 74 0 1121 60 0 0 chr1 8717226 8717360 -233946993 + AluY SINE Alu 169 302 -9 904 124 0 29 chr1 8717373 8717510 -233946843 + AluJb SINE Alu 1 133 -179 693 202 54 24 chr1 8717548 8717716 -233946637 + MLT1D LTR MaLR 21 193 -312 835 154 8 0 chr1 8717723 8717846 -233946507 + AluJo/FLAM SINE Alu 1 124 -188 1723 173 3 23 chr1 8717848 8718148 -233946205 + AluJo SINE Alu 1 294 -18 2365 98 0 0 chr1 8718149 8718446 -233945907 + AluSx SINE Alu 1 297 -15 985 251 34 0 chr1 8718479 8718734 -233945619 + MLT1D LTR MaLR 217 505 0 272 267 69 40 chr1 8718734 8718835 -233945518 - MIR SINE MIR -151 111 8 2399 94 0 10 chr1 8718861 8719169 -233945184 + AluSq SINE Alu 1 305 -8 1911 86 100 4 chr1 8719172 8719441 -233944912 + AluSg SINE Alu 1 295 -15 2307 102 3 0 chr1 8720191 8720486 -233943867 - AluSq SINE Alu -17 296 1 1145 220 24 16 chr1 8720715 8720970 -233943383 + AluJo SINE Alu 54 310 -2 870 173 0 0 chr1 8721003 8721136 -233943217 - FLAM_A SINE Alu 0 133 1 2409 83 3 0 chr1 8721202 8721502 -233942851 - AluSx SINE Alu -11 301 1 1850 103 4 8 chr1 8722139 8722391 -233941962 + AluSx SINE Alu 47 297 -15 270 355 10 44 chr1 8722402 8722605 -233941748 - L2 LINE L2 -2697 617 422 365 234 103 61 chr1 8723040 8723352 -233941001 - L1MC5 LINE L1 -1 8041 7720 226 74 0 56 chr1 8723435 8723489 -233940864 - L1MC5 LINE L1 -282 7679 7629 2298 105 0 3 chr1 8724062 8724368 -233939985 + AluSx SINE Alu 1 305 -7 270 0 0 0 chr1 8724560 8724590 -233939763 + (T)n Simple_repeat Simple_repeat 1 30 0 1344 119 0 11 chr1 8724851 8725028 -233939325 - AluSx SINE Alu -137 175 1 1076 164 45 0 chr1 8726503 8726680 -233937673 - MER58A DNA MER1_type 0 224 40 480 136 344 24 chr1 8726981 8727106 -233937247 + FAM SINE Alu 3 167 -8 23 0 0 0 chr1 8727106 8727129 -233937224 + AT_rich Low_complexity Low_complexity 1 23 0 2536 215 40 30 chr1 8727272 8727344 -233937009 + L1ME1 LINE L1 5511 5581 -585 2378 99 0 10 chr1 8727344 8727657 -233936696 - AluSg SINE Alu 0 310 1 2536 215 40 30 chr1 8727657 8728227 -233936126 + L1ME1 LINE L1 5581 6160 -6 2175 98 11 3 chr1 8728475 8728760 -233935593 - AluSq SINE Alu -24 289 3 2232 108 0 7 chr1 8728770 8729067 -233935286 - AluSg SINE Alu -15 295 1 828 237 110 4 chr1 8729300 8729528 -233934825 - MIR SINE MIR 0 262 11 2088 125 0 31 chr1 8730972 8731292 -233933061 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr1 8731322 8731351 -233933002 + AT_rich Low_complexity Low_complexity 1 29 0 294 194 0 0 chr1 8732430 8732492 -233931861 - Alu SINE Alu 0 302 241 815 173 15 0 chr1 8732611 8732744 -233931609 + AluJb SINE Alu 148 282 -30 459 0 0 0 chr1 8732747 8732798 -233931555 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 317 208 0 0 chr1 8732808 8732868 -233931485 + AluJ/monomer SINE Alu 1 45 -263 981 174 6 0 chr1 8732877 8733038 -233931315 + AluJb SINE Alu 147 308 -4 2284 86 0 3 chr1 8733038 8733329 -233931024 + AluSg SINE Alu 1 290 -20 1140 277 20 48 chr1 8733691 8734149 -233930204 - L2 LINE L2 -43 3270 2826 1792 126 68 4 chr1 8734701 8734979 -233929374 - AluSx SINE Alu -3 309 14 299 239 137 58 chr1 8735278 8735483 -233928870 + L1ME LINE L1 5385 5605 -516 1524 177 11 14 chr1 8735550 8735833 -233928520 + AluJo SINE Alu 1 282 -30 702 165 0 9 chr1 8736252 8736361 -233927992 + Tigger3(Golem) DNA MER2_type 1 108 -2921 505 76 51 25 chr1 8736352 8736431 -233927922 + Tigger3(Golem) DNA MER2_type 2277 2357 -672 * 3623 126 34 56 chr1 8736552 8736563 -233927790 + Tigger3(Golem) DNA MER2_type 2386 2396 -632 2228 114 0 19 chr1 8736563 8736880 -233927473 + AluSx SINE Alu 1 311 -1 3623 126 34 56 chr1 8736880 8736945 -233927408 + Tigger3(Golem) DNA MER2_type 2396 2461 -567 2141 112 3 7 chr1 8736945 8737241 -233927112 - AluSq SINE Alu -12 301 7 3623 126 34 56 chr1 8737241 8737820 -233926533 + Tigger3(Golem) DNA MER2_type 2461 3027 -1 1518 142 0 124 chr1 8737881 8738030 -233926323 + AluJb SINE Alu 1 88 -224 2154 112 10 0 chr1 8738030 8738324 -233926029 + AluSx SINE Alu 1 297 -15 1518 142 0 124 chr1 8738324 8738504 -233925849 + AluJb SINE Alu 88 289 -23 21 0 0 0 chr1 8738575 8738596 -233925757 + AT_rich Low_complexity Low_complexity 1 21 0 182 319 83 14 chr1 8738970 8739042 -233925311 + L2 LINE L2 3127 3203 -69 189 175 0 0 chr1 8739500 8739540 -233924813 + (CA)n Simple_repeat Simple_repeat 2 41 0 1922 143 0 4 chr1 8739853 8740133 -233924220 + AluSx SINE Alu 1 279 -33 1091 93 0 70 chr1 8740246 8740418 -233923935 - AluSq SINE Alu -53 260 101 655 138 0 0 chr1 8740472 8740566 -233923787 + AluSg1 SINE Alu 2 95 -214 188 35 35 0 chr1 8740566 8740595 -233923758 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2238 110 0 0 chr1 8740687 8740979 -233923374 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1 8740979 8741009 -233923344 + AT_rich Low_complexity Low_complexity 1 30 0 180 200 0 0 chr1 8741150 8741190 -233923163 + (TA)n Simple_repeat Simple_repeat 1 40 0 1480 171 23 63 chr1 8741590 8741889 -233922464 + AluJb SINE Alu 1 287 -25 241 286 16 0 chr1 8741965 8742028 -233922325 + L2 LINE L2 3234 3297 -16 2079 132 0 3 chr1 8742088 8742391 -233921962 - AluSx SINE Alu -10 302 1 2078 151 0 0 chr1 8742450 8742755 -233921598 + AluSx SINE Alu 1 305 -7 2585 59 0 3 chr1 8743018 8743324 -233921029 - AluY SINE Alu -6 305 1 690 296 37 21 chr1 8744202 8744264 -233920089 - MIR SINE MIR 0 262 203 1836 166 0 7 chr1 8744264 8744560 -233919793 - AluJo SINE Alu -18 294 1 690 296 37 21 chr1 8744560 8744740 -233919613 - MIR SINE MIR -59 203 16 2052 125 0 20 chr1 8744894 8745197 -233919156 + AluSq SINE Alu 1 297 -16 1808 172 0 3 chr1 8745207 8745536 -233918817 + AluJb SINE Alu 1 328 0 2220 102 0 0 chr1 8745579 8745884 -233918469 + AluSx SINE Alu 1 305 0 2157 119 3 0 chr1 8746094 8746388 -233917965 - AluSq SINE Alu -18 295 1 2045 120 10 13 chr1 8746652 8746960 -233917393 - AluSx SINE Alu -5 307 1 1276 214 56 4 chr1 8747016 8747283 -233917070 - AluJo SINE Alu -31 281 1 1203 139 0 0 chr1 8747327 8747499 -233916854 + AluSg/x SINE Alu 124 295 -15 876 163 0 0 chr1 8747732 8747861 -233916492 + FLAM_C SINE Alu 3 131 -12 1852 157 3 7 chr1 8747922 8748221 -233916132 - AluJo SINE Alu -14 298 1 432 245 185 0 chr1 8749001 8749152 -233915201 + L2 LINE L2 2449 2627 -687 1796 178 0 18 chr1 8749340 8749650 -233914703 + AluJb SINE Alu 1 305 0 1940 110 88 25 chr1 8749750 8750067 -233914286 + MER1B DNA MER1_type 1 337 0 197 217 0 67 chr1 8750159 8750219 -233914134 + MIR SINE MIR 120 175 -87 417 238 151 101 chr1 8750273 8750676 -233913677 - L2 LINE L2 0 3313 2784 1850 153 0 14 chr1 8750676 8750970 -233913383 + AluSx SINE Alu 1 290 -22 417 238 151 101 chr1 8750970 8751050 -233913303 - L2 LINE L2 -529 2784 2710 1263 284 152 10 chr1 8751201 8751793 -233912560 - L2 LINE L2 -647 2667 1992 2610 44 0 0 chr1 8752723 8753019 -233911334 + AluY SINE Alu 1 296 -15 2526 71 10 0 chr1 8753023 8753333 -233911020 + AluSp SINE Alu 1 313 0 407 300 71 29 chr1 8753950 8754120 -233910233 + MIR SINE MIR 20 196 -66 251 179 0 18 chr1 8754256 8754312 -233910041 - AluSp/q SINE Alu 0 303 249 2340 90 3 13 chr1 8754319 8754629 -233909724 - AluSx SINE Alu -5 307 1 381 89 0 0 chr1 8754915 8754957 -233909396 + (TC)n Simple_repeat Simple_repeat 2 46 -11 279 0 0 0 chr1 8754957 8754988 -233909365 + (CA)n Simple_repeat Simple_repeat 1 31 0 381 89 0 0 chr1 8754988 8755001 -233909352 + (TC)n Simple_repeat Simple_repeat 45 57 0 321 255 133 0 chr1 8755365 8755463 -233908890 + MIR SINE MIR 80 190 -72 2142 113 0 3 chr1 8755468 8755773 -233908580 - AluSx SINE Alu 0 304 1 1951 139 0 17 chr1 8756167 8756304 -233908049 + AluJb SINE Alu 1 139 -171 2244 98 10 7 chr1 8756304 8756600 -233907753 + AluSx SINE Alu 1 297 -15 1951 139 0 17 chr1 8756600 8756777 -233907576 + AluJb SINE Alu 139 310 0 2424 84 0 0 chr1 8757220 8757517 -233906836 - AluY SINE Alu -14 297 1 1981 169 68 39 chr1 8757702 8758084 -233906269 + MSTB LTR MaLR 1 397 -29 1785 82 0 9 chr1 8758084 8758316 -233906037 + MER30 DNA MER1_type 1 230 0 1981 169 68 39 chr1 8758316 8758347 -233906006 + MSTB LTR MaLR 397 426 0 2341 82 0 0 chr1 8758362 8758674 -233905679 - AluSc SINE Alu 0 312 1 211 172 35 0 chr1 8758708 8758766 -233905587 + A-rich Low_complexity Low_complexity 4 63 0 2060 127 0 3 chr1 8758770 8759085 -233905268 + AluJb SINE Alu 1 314 0 688 262 139 36 chr1 8759211 8759617 -233904736 + MLT1G1 LTR MaLR 1 496 -71 2210 91 20 17 chr1 8759617 8759913 -233904440 - AluSx SINE Alu -15 297 1 688 262 139 36 chr1 8759913 8759963 -233904390 + MLT1G1 LTR MaLR 496 539 -28 240 228 30 30 chr1 8759965 8760066 -233904287 + MLT1G1-int LTR MaLR 1 101 -1270 340 338 31 14 chr1 8760074 8760296 -233904057 + MLT1G1-int LTR MaLR 290 515 -856 28 0 0 0 chr1 8760301 8760329 -233904024 + AT_rich Low_complexity Low_complexity 1 28 0 2370 87 3 0 chr1 8760408 8760708 -233903645 + AluSx SINE Alu 1 301 -11 200 97 65 16 chr1 8760956 8761018 -233903335 + (TTATA)n Simple_repeat Simple_repeat 5 69 0 288 217 0 0 chr1 8761151 8761220 -233903133 + AluSp/q SINE Alu 233 301 -2 1959 106 26 70 chr1 8762052 8762364 -233901989 - AluSx SINE Alu -14 298 1 2337 96 10 0 chr1 8762373 8762674 -233901679 - AluSx SINE Alu -8 304 1 2315 106 0 0 chr1 8763010 8763311 -233901042 - AluSg SINE Alu -8 302 2 2007 108 0 0 chr1 8763603 8763863 -233900490 - AluSc SINE Alu -21 288 29 1534 102 9 14 chr1 8764487 8764703 -233899650 - AluSg/x SINE Alu -22 288 74 392 308 77 16 chr1 8764798 8764980 -233899373 + MIR SINE MIR 18 210 -52 347 294 37 37 chr1 8765159 8765295 -233899058 + MIR3 SINE MIR 68 203 -5 302 277 8 50 chr1 8765363 8765427 -233898926 - MIR SINE MIR -1 261 202 2157 109 0 0 chr1 8765427 8765746 -233898607 - AluY SINE Alu 0 319 1 302 277 8 50 chr1 8765746 8765799 -233898554 - MIR SINE MIR -60 202 148 1330 178 82 4 chr1 8765918 8766149 -233898204 - AluJo SINE Alu -63 249 1 2570 53 0 37 chr1 8766164 8766485 -233897868 - AluY SINE Alu -2 309 1 228 241 86 0 chr1 8766622 8766680 -233897673 + L2 LINE L2 3208 3270 -2 495 241 153 76 chr1 8767647 8767842 -233896511 + L1MC5 LINE L1 6920 7098 -863 2253 114 0 16 chr1 8767842 8768157 -233896196 - AluSx SINE Alu -2 310 1 495 241 153 76 chr1 8768157 8768241 -233896112 + L1MC5 LINE L1 7098 7174 -787 1559 120 5 0 chr1 8768241 8768457 -233895896 - AluSq SINE Alu -20 293 77 495 241 153 76 chr1 8768457 8768678 -233895675 + L1MC5 LINE L1 7174 7460 -501 26 0 0 0 chr1 8768829 8768855 -233895498 + AT_rich Low_complexity Low_complexity 1 26 0 227 51 0 0 chr1 8769104 8769143 -233895210 + Alu SINE Alu 128 166 0 2010 133 7 13 chr1 8769182 8769491 -233894862 - AluJb SINE Alu -5 307 1 24 0 0 0 chr1 8770156 8770180 -233894173 + AT_rich Low_complexity Low_complexity 1 24 0 1046 182 107 36 chr1 8770694 8770974 -233893379 - AluJb SINE Alu -2 300 1 2226 158 0 0 chr1 8771001 8771337 -233893016 + MER1B DNA MER1_type 2 337 0 1512 191 14 27 chr1 8771454 8771747 -233892606 + AluJo SINE Alu 1 289 -23 2261 93 0 10 chr1 8771762 8772062 -233892291 + AluSg SINE Alu 1 297 -13 797 178 7 27 chr1 8772084 8772230 -233892123 + AluJb SINE Alu 13 155 -157 2430 91 3 0 chr1 8772334 8772641 -233891712 + AluSc SINE Alu 1 308 -1 1825 121 21 25 chr1 8772891 8773205 -233891148 - AluSg SINE Alu 0 313 1 242 300 10 10 chr1 8773674 8773774 -233890579 + L2 LINE L2 2681 2780 -534 1143 134 0 0 chr1 8774185 8774342 -233890011 + AluSg/x SINE Alu 125 281 -31 2348 112 0 0 chr1 8774779 8775082 -233889271 + AluSx SINE Alu 1 303 -9 2151 140 0 0 chr1 8775214 8775521 -233888832 + AluSq SINE Alu 1 307 -6 553 168 103 52 chr1 8775522 8775677 -233888676 - AluJo SINE Alu -36 276 114 590 0 14 0 chr1 8775735 8775805 -233888548 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 1528 186 10 35 chr1 8775805 8775955 -233888398 - AluJo SINE Alu -29 283 142 2492 67 3 7 chr1 8775955 8776252 -233888101 - AluSp SINE Alu -13 300 5 1528 186 10 35 chr1 8776252 8776391 -233887962 - AluJo SINE Alu -170 142 1 2250 103 7 7 chr1 8776401 8776702 -233887651 - AluSp SINE Alu -12 301 1 2323 92 7 0 chr1 8776704 8776997 -233887356 - AluSp SINE Alu -18 295 1 22 35 0 0 chr1 8777224 8777253 -233887100 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr1 8777311 8777334 -233887019 + AT_rich Low_complexity Low_complexity 1 23 0 2307 112 0 0 chr1 8777456 8777751 -233886602 + AluSx SINE Alu 1 295 -17 759 275 37 68 chr1 8778187 8778560 -233885793 - L2 LINE L2 -5 3308 2948 1863 120 88 0 chr1 8778560 8778843 -233885510 + AluSx SINE Alu 1 308 -4 759 275 37 68 chr1 8778843 8778898 -233885455 - L2 LINE L2 -365 2948 2893 2458 103 0 0 chr1 8778903 8779215 -233885138 + AluSx SINE Alu 1 312 0 691 198 78 12 chr1 8780023 8780190 -233884163 + MIR SINE MIR 69 246 -16 1742 164 17 27 chr1 8780328 8780626 -233883727 + AluJb SINE Alu 1 295 -17 2523 66 3 0 chr1 8780701 8781003 -233883350 + AluSp SINE Alu 1 303 -10 323 23 23 0 chr1 8781003 8781047 -233883306 + (TA)n Simple_repeat Simple_repeat 2 46 0 2293 114 0 0 chr1 8781298 8781588 -233882765 + AluSg SINE Alu 3 292 -18 2434 94 0 0 chr1 8781589 8781897 -233882456 + AluSg SINE Alu 1 308 -2 1280 204 68 11 chr1 8782042 8782322 -233882031 - AluJo SINE Alu -6 296 1 225 0 0 0 chr1 8783244 8783269 -233881084 + (TA)n Simple_repeat Simple_repeat 1 25 0 229 233 0 0 chr1 8783269 8783329 -233881024 - L1MC4 LINE L1 -1339 6703 6644 1232 151 0 33 chr1 8783360 8783572 -233880781 - AluJo SINE Alu -103 209 5 32 0 0 0 chr1 8785341 8785373 -233878980 + GC_rich Low_complexity Low_complexity 1 32 0 2244 98 14 0 chr1 8786944 8787240 -233877113 - AluSq SINE Alu -13 300 1 2126 103 3 40 chr1 8787522 8787843 -233876510 + AluSx SINE Alu 3 311 -1 226 235 0 0 chr1 8788193 8788244 -233876109 + L1 LINE L1 4284 4334 -1812 1555 152 78 19 chr1 8788275 8788544 -233875809 - AluJb SINE Alu -27 285 1 1821 164 6 35 chr1 8788591 8788909 -233875444 + AluJo SINE Alu 1 309 -3 2158 96 0 4 chr1 8788943 8789224 -233875129 + AluSx SINE Alu 20 299 -13 378 170 2 5 chr1 8789560 8789656 -233874697 - AluS SINE Alu 0 301 228 216 97 0 0 chr1 8789681 8789712 -233874641 + (ATTG)n Simple_repeat Simple_repeat 2 32 0 2089 104 0 17 chr1 8789714 8790001 -233874352 - AluSx SINE Alu -30 282 1 1909 133 0 65 chr1 8790021 8790212 -233874141 - AluSx SINE Alu -11 301 138 2172 122 3 0 chr1 8790212 8790507 -233873846 + AluSp SINE Alu 1 296 -17 1909 133 0 65 chr1 8790507 8790637 -233873716 - AluSx SINE Alu -174 138 1 2085 114 3 13 chr1 8790695 8790994 -233873359 - AluSg SINE Alu -14 296 1 928 202 0 0 chr1 8791050 8791218 -233873135 + FAM SINE Alu 2 169 -6 1970 154 3 0 chr1 8791243 8791535 -233872818 + AluSq SINE Alu 1 293 -20 751 184 8 0 chr1 8792293 8792418 -233871935 + FAM SINE Alu 41 166 -19 21 36 0 0 chr1 8792418 8792446 -233871907 + AT_rich Low_complexity Low_complexity 1 28 0 2399 81 3 3 chr1 8792455 8792763 -233871590 + AluY SINE Alu 1 308 -3 1106 264 84 39 chr1 8792843 8793429 -233870924 - L1M4 LINE L1 -1218 4928 4317 2258 109 3 0 chr1 8793490 8793783 -233870570 - AluSx SINE Alu -18 294 1 2013 113 7 4 chr1 8795180 8795454 -233868899 - AluSx SINE Alu -24 288 14 2176 119 13 13 chr1 8795472 8795783 -233868570 - AluSx SINE Alu -1 311 1 24 53 0 0 chr1 8795890 8795928 -233868425 + AT_rich Low_complexity Low_complexity 1 38 0 2057 105 0 90 chr1 8796749 8796841 -233867512 + AluSx SINE Alu 1 100 -212 2399 91 3 3 chr1 8796841 8797150 -233867203 + AluSc SINE Alu 1 309 0 2057 105 0 90 chr1 8797150 8797219 -233867134 + AluSx SINE Alu 100 174 -138 2429 87 3 0 chr1 8797219 8797517 -233866836 + AluSp SINE Alu 2 300 -13 2057 105 0 90 chr1 8797517 8797688 -233866665 + AluSx SINE Alu 174 304 -8 337 261 60 65 chr1 8797889 8798104 -233866249 + MIR SINE MIR 48 261 -1 286 234 47 0 chr1 8798161 8798225 -233866128 + MIR SINE MIR 14 80 -182 * 552 237 46 8 chr1 8798211 8798342 -233866011 + L2 LINE L2 3137 3272 0 219 304 63 0 chr1 8799161 8799240 -233865113 + MIR SINE MIR 32 115 -93 1931 164 0 0 chr1 8799579 8799878 -233864475 + AluSx SINE Alu 1 299 -13 2025 150 3 31 chr1 8800027 8800381 -233863972 + MER7A DNA MER2_type 5 346 0 429 133 0 0 chr1 8800451 8800511 -233863842 + AluS SINE Alu 2 61 -257 1022 118 0 7 chr1 8800614 8800758 -233863595 + AluSg/x SINE Alu 129 271 -41 741 116 124 8 chr1 8800769 8800890 -233863463 + FLAM_C SINE Alu 2 136 -7 2092 138 0 0 chr1 8801182 8801473 -233862880 - AluSx SINE Alu -21 291 1 2536 81 0 3 chr1 8801960 8802270 -233862083 - AluSc SINE Alu 0 309 1 2508 134 57 2 chr1 8802640 8803044 -233861309 + MSTB LTR MaLR 1 426 0 426 252 63 25 chr1 8803111 8803270 -233861083 + HsTC2 DNA Tc2 729 893 -1005 1880 118 0 0 chr1 8803389 8803666 -233860687 + AluSx SINE Alu 35 312 0 1920 138 3 3 chr1 8804076 8804358 -233859995 - AluSx SINE Alu -8 304 23 990 148 206 18 chr1 8805160 8805383 -233858970 + L1MD3 LINE L1 7730 7994 -1 400 250 60 9 chr1 8806089 8806205 -233858148 - L2 LINE L2 -3 3310 3189 2004 98 0 85 chr1 8806536 8806670 -233857683 + AluSc SINE Alu 1 145 -182 2372 95 10 0 chr1 8806670 8806974 -233857379 + AluSc SINE Alu 1 307 -2 2004 98 0 85 chr1 8806974 8807192 -233857161 + AluSc SINE Alu 145 327 0 2332 99 6 6 chr1 8807881 8808193 -233856160 + AluSx SINE Alu 1 312 0 234 0 0 0 chr1 8808838 8808864 -233855489 + (CA)n Simple_repeat Simple_repeat 2 27 0 2473 68 3 13 chr1 8809034 8809343 -233855010 + AluY SINE Alu 1 306 -5 2266 102 3 0 chr1 8809989 8810283 -233854070 + AluSp SINE Alu 1 295 -18 372 293 13 63 chr1 8810335 8810530 -233853823 + FAM SINE Alu 1 168 -7 1417 137 11 48 chr1 8811362 8811632 -233852721 - AluJb SINE Alu 0 312 53 304 331 122 0 chr1 8811664 8811812 -233852541 - L1ME4a LINE L1 -82 6039 5874 2160 117 0 19 chr1 8812026 8812205 -233852148 - AluSg SINE Alu 0 310 138 2377 86 0 3 chr1 8812205 8812496 -233851857 - AluY SINE Alu -21 290 1 2160 117 0 19 chr1 8812496 8812632 -233851721 - AluSg SINE Alu -172 138 1 2067 125 4 0 chr1 8812637 8812938 -233851415 - AluSx SINE Alu 0 302 1 798 169 0 22 chr1 8813158 8813294 -233851059 - FLAM_C SINE Alu 0 133 1 342 231 17 34 chr1 8813294 8813402 -233850951 - L1ME4a LINE L1 -271 5850 5743 194 269 43 65 chr1 8813401 8813494 -233850859 + MIR SINE MIR 114 204 -58 * 1606 171 33 0 chr1 8813560 8813834 -233850519 - AluJo SINE Alu -29 283 1 1633 129 30 113 chr1 8814677 8814958 -233849395 - MER7A DNA MER2_type -2699 339 97 2281 98 0 0 chr1 8814958 8815245 -233849108 - AluSg SINE Alu -23 287 1 1633 129 30 113 chr1 8815245 8815334 -233849019 - MER7A DNA MER2_type -2941 97 2 1293 142 5 10 chr1 8815590 8815787 -233848566 + AluSx SINE Alu 26 221 -91 884 152 7 7 chr1 8815926 8816064 -233848289 - AluJo SINE Alu -174 138 1 2111 139 0 0 chr1 8816084 8816387 -233847966 - AluSq SINE Alu -10 303 1 1956 153 0 10 chr1 8816451 8816758 -233847595 - AluJb SINE Alu -4 308 5 189 173 77 58 chr1 8818081 8818133 -233846220 + MIR SINE MIR 33 85 -123 2175 102 0 3 chr1 8818176 8818495 -233845858 - AluSg SINE Alu 0 318 1 2390 92 0 3 chr1 8818602 8818907 -233845446 - AluSq SINE Alu -9 304 1 2400 73 3 0 chr1 8819032 8819319 -233845034 - AluSq SINE Alu -25 288 1 2130 107 7 0 chr1 8819645 8819969 -233844384 - AluSx SINE Alu 0 326 1 885 116 0 8 chr1 8821021 8821150 -233843203 - AluSg/x SINE Alu -12 300 173 1968 112 0 14 chr1 8821701 8821987 -233842366 - AluSx SINE Alu -19 293 12 744 188 0 16 chr1 8822012 8822140 -233842213 - FLAM_C SINE Alu -16 127 2 308 263 59 59 chr1 8822140 8822258 -233842095 - L1M4 LINE L1 -6376 166 49 2104 77 26 4 chr1 8822555 8822827 -233841526 + AluSq SINE Alu 14 291 -22 986 151 6 67 chr1 8822834 8823013 -233841340 + AluSg/x SINE Alu 128 295 -15 227 217 14 72 chr1 8823246 8823315 -233841038 - MIR SINE MIR -124 84 20 305 226 105 65 chr1 8824285 8824409 -233839944 - FLAM_A SINE Alu -4 129 1 189 0 0 0 chr1 8824412 8824433 -233839920 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr1 8824951 8824973 -233839380 + AT_rich Low_complexity Low_complexity 1 22 0 778 135 35 28 chr1 8825372 8825513 -233838840 - FLAM_C SINE Alu 0 143 2 2501 80 0 0 chr1 8825546 8825857 -233838496 + AluY SINE Alu 1 311 0 290 289 217 7 chr1 8826798 8826950 -233837403 + MIR SINE MIR 24 207 -55 2207 88 13 13 chr1 8827475 8827780 -233836573 + AluSp SINE Alu 1 305 -8 2116 112 0 0 chr1 8828089 8828366 -233835987 + AluSx SINE Alu 21 297 -15 700 196 8 23 chr1 8828375 8828508 -233835845 + FLAM_C SINE Alu 2 132 -1 1072 153 139 0 chr1 8828597 8828799 -233835554 - AluJo SINE Alu -20 292 63 1036 177 0 31 chr1 8828907 8829099 -233835254 - AluJo SINE Alu -126 186 1 2280 110 0 3 chr1 8829322 8829630 -233834723 - AluSc SINE Alu -2 307 1 258 240 0 27 chr1 8831338 8831413 -233832940 + CT-rich Low_complexity Low_complexity 4 76 0 369 274 162 11 chr1 8831659 8831838 -233832515 + L3 LINE CR1 1294 1499 -78 2598 52 0 3 chr1 8832021 8832328 -233832025 + AluY SINE Alu 1 306 -5 989 157 7 7 chr1 8833189 8833342 -233831011 + FRAM SINE Alu 1 153 -23 2174 110 7 19 chr1 8833364 8833500 -233830853 + AluSx SINE Alu 1 137 -175 2080 129 10 7 chr1 8833500 8833809 -233830544 + AluSx SINE Alu 1 310 -2 2174 110 7 19 chr1 8833809 8833980 -233830373 + AluSx SINE Alu 137 304 -8 2340 102 0 0 chr1 8835141 8835435 -233828918 - AluSx SINE Alu -18 294 1 1235 153 6 0 chr1 8836337 8836520 -233827833 - AluSg/x SINE Alu -57 255 72 420 186 0 0 chr1 8837260 8837330 -233827023 - AluJ/FRAM SINE Alu -19 293 224 24 0 0 0 chr1 8837806 8837830 -233826523 + AT_rich Low_complexity Low_complexity 1 24 0 652 251 56 101 chr1 8838484 8838698 -233825655 + L2 LINE L2 2972 3166 -147 2030 135 0 0 chr1 8838698 8839007 -233825346 + AluSx SINE Alu 1 309 0 652 251 56 101 chr1 8839007 8839149 -233825204 + L2 LINE L2 3166 3313 0 198 91 0 0 chr1 8839224 8839257 -233825096 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 969 118 7 0 chr1 8839257 8839392 -233824961 - L1PA8 LINE L1 -5 6167 6032 1168 108 0 6 chr1 8839572 8839739 -233824614 - AluY SINE Alu -7 304 139 1778 83 26 0 chr1 8839741 8839971 -233824382 + AluSc SINE Alu 56 291 -18 2355 71 7 7 chr1 8840525 8840820 -233823533 + AluY SINE Alu 1 295 -16 2261 94 10 3 chr1 8842490 8842788 -233821565 - AluSc SINE Alu -9 300 1 1933 134 29 0 chr1 8843683 8843959 -233820394 + AluSx SINE Alu 2 285 -27 25 0 0 0 chr1 8843959 8843984 -233820369 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr1 8845943 8845964 -233818389 + AT_rich Low_complexity Low_complexity 1 21 0 466 106 0 0 chr1 8847971 8848037 -233816316 + Alu SINE Alu 2 67 -251 1033 0 0 0 chr1 8848062 8848167 -233816186 + U6 snRNA snRNA 1 105 -2 234 182 0 0 chr1 8848167 8848233 -233816120 + A-rich Low_complexity Low_complexity 1 66 0 21 0 0 0 chr1 8848681 8848702 -233815651 + AT_rich Low_complexity Low_complexity 1 21 0 2098 113 0 0 chr1 8849051 8849365 -233814988 + AluSx SINE Alu 1 314 0 485 237 203 0 chr1 8850150 8850268 -233814085 + FLAM_A SINE Alu 1 142 0 413 52 0 143 chr1 8850444 8850480 -233813873 - MER41B LTR ERV1 -88 547 526 2227 106 20 0 chr1 8850480 8850782 -233813571 + AluSx SINE Alu 1 308 -4 413 52 0 143 chr1 8850782 8850822 -233813531 - MER41B LTR ERV1 -109 526 482 233 215 27 87 chr1 8852104 8852253 -233812100 + T-rich Low_complexity Low_complexity 2 141 0 1706 174 26 3 chr1 8855570 8855874 -233808479 + 7SLRNA srpRNA srpRNA 10 320 0 2250 116 7 0 chr1 8856396 8856706 -233807647 - AluSx SINE Alu 0 312 1 765 287 185 12 chr1 8858741 8859246 -233805107 + L2 LINE L2 2590 3197 -75 967 201 27 5 chr1 8859278 8859462 -233804891 - MER5A DNA MER1_type -1 188 1 1292 212 0 9 chr1 8859473 8859695 -233804658 - MER58A DNA MER1_type -2 222 3 207 300 56 33 chr1 8859770 8859860 -233804493 - L2 LINE L2 -43 3229 3138 1469 285 138 72 chr1 8859971 8860308 -233804045 + L2 LINE L2 1361 1674 -1640 2155 110 20 13 chr1 8860308 8860607 -233803746 - AluSx SINE Alu -11 301 1 1469 285 138 72 chr1 8860607 8861761 -233802592 + L2 LINE L2 1674 2951 -363 226 301 21 65 chr1 8861935 8862028 -233802325 + L2 LINE L2 3184 3272 0 1992 146 7 7 chr1 8862152 8862461 -233801892 - AluSx SINE Alu -3 309 1 242 281 49 0 chr1 8862461 8862543 -233801810 + MIR SINE MIR 153 238 -24 2615 60 0 0 chr1 8862643 8862945 -233801408 - AluY SINE Alu -9 302 1 199 0 0 0 chr1 8862983 8863005 -233801348 + (TTA)n Simple_repeat Simple_repeat 1 180 0 1942 100 48 0 chr1 8863005 8863277 -233801076 - AluSq SINE Alu -29 284 1 1880 173 0 0 chr1 8863503 8863815 -233800538 - AluJb SINE Alu 0 312 1 545 247 210 49 chr1 8864158 8864264 -233800089 - L1MC4 LINE L1 -122 7920 7832 2274 111 13 0 chr1 8864264 8864571 -233799782 - AluSx SINE Alu -1 311 1 545 247 210 49 chr1 8864571 8864869 -233799484 - L1MC4 LINE L1 -210 7832 7451 2399 106 0 0 chr1 8864869 8865171 -233799182 + AluSx SINE Alu 1 302 -10 1040 179 0 0 chr1 8865182 8865344 -233799009 + AluJb SINE Alu 137 298 -14 823 255 41 28 chr1 8865357 8865579 -233798774 - L1MC4 LINE L1 -591 7451 7222 1797 160 0 25 chr1 8865579 8865898 -233798455 - AluJb SINE Alu -1 311 1 823 255 41 28 chr1 8865898 8865993 -233798360 - L1MC4 LINE L1 -820 7222 7130 705 119 68 0 chr1 8865998 8866116 -233798237 - FAM SINE Alu -3 46 1 357 89 0 0 chr1 8866120 8866165 -233798188 + Alu SINE Alu 1 45 -257 1112 194 197 13 chr1 8866302 8866612 -233797741 - L1MC4 LINE L1 -919 7123 6757 2329 95 0 3 chr1 8866645 8866939 -233797414 + AluSg SINE Alu 1 293 -17 209 312 32 21 chr1 8867062 8867155 -233797198 - MIR SINE MIR -123 139 46 2208 96 10 7 chr1 8867535 8867826 -233796527 + AluSq SINE Alu 1 292 -21 615 249 62 10 chr1 8867957 8868150 -233796203 - MER106A DNA MER1_type -33 203 1 2357 84 7 0 chr1 8868199 8868496 -233795857 - AluSx SINE Alu -13 299 1 237 288 24 16 chr1 8869010 8869135 -233795218 + CT-rich Low_complexity Low_complexity 4 129 0 1700 139 100 0 chr1 8869811 8870096 -233794257 - AluSq SINE Alu 0 311 1 2168 133 0 0 chr1 8870198 8870499 -233793854 - AluSx SINE Alu -11 301 1 21 36 0 0 chr1 8870536 8870564 -233793789 + AT_rich Low_complexity Low_complexity 1 28 0 204 178 0 0 chr1 8871104 8871149 -233793204 + L2 LINE L2 3264 3308 -5 517 279 122 13 chr1 8871358 8871587 -233792766 + MIR SINE MIR 9 262 0 26 30 0 0 chr1 8871901 8871934 -233792419 + AT_rich Low_complexity Low_complexity 1 33 0 597 144 0 0 chr1 8872037 8872127 -233792226 - AluJ SINE Alu -20 292 203 874 139 0 0 chr1 8872135 8872257 -233792096 - AluJ SINE Alu -190 122 1 1443 191 40 7 chr1 8872444 8872716 -233791637 + AluJb SINE Alu 2 282 -30 226 204 78 97 chr1 8874060 8874163 -233790190 - L1ME4a LINE L1 -48 6073 5973 286 103 0 0 chr1 8876157 8876196 -233788157 + Alu SINE Alu 1 39 -262 879 85 51 0 chr1 8876196 8876314 -233788039 + AluSq/x SINE Alu 13 136 -176 2392 80 3 3 chr1 8876314 8876615 -233787738 + AluSq SINE Alu 1 301 -12 1381 176 69 24 chr1 8877020 8877310 -233787043 + AluJo SINE Alu 3 305 -7 2243 105 0 3 chr1 8878547 8878842 -233785511 + AluSg SINE Alu 1 294 -16 340 198 159 57 chr1 8879815 8879972 -233784381 - L2 LINE L2 -5 3308 3136 959 108 31 0 chr1 8880073 8880202 -233784151 + AluSq/x SINE Alu 1 133 -179 2297 98 7 3 chr1 8881151 8881458 -233782895 - AluSq SINE Alu -5 308 1 448 258 113 42 chr1 8881458 8881671 -233782682 + L1MC4 LINE L1 7809 8036 -6 26 0 0 0 chr1 8882340 8882366 -233781987 + GC_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chr1 8882586 8882621 -233781732 + GC_rich Low_complexity Low_complexity 1 35 0 1837 164 7 7 chr1 8883157 8883461 -233780892 - AluJo SINE Alu -8 304 1 241 342 54 0 chr1 8883906 8884055 -233780298 + MIR SINE MIR 32 188 -74 2122 127 3 3 chr1 8884220 8884511 -233779842 + AluSx SINE Alu 1 291 -21 818 193 23 17 chr1 8884546 8884722 -233779631 + AluJb SINE Alu 126 302 -10 365 250 150 19 chr1 8884883 8885043 -233779310 - MIR SINE MIR -69 193 13 2239 47 18 11 chr1 8885131 8885405 -233778948 + AluSp SINE Alu 1 276 -37 5655 84 6 0 chr1 8885405 8886118 -233778235 - LTR5 LTR ERVK 0 969 253 4706 121 81 95 chr1 8886118 8887364 -233776989 + pTR5 LTR ERV1 753 2295 -143 2191 57 19 0 chr1 8887375 8887637 -233776716 - LTR5 LTR ERVK -702 267 1 1820 130 17 17 chr1 8887699 8887998 -233776355 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr1 8888031 8888068 -233776285 + AT_rich Low_complexity Low_complexity 1 37 0 275 233 33 0 chr1 8888123 8888183 -233776170 + L2 LINE L2 3252 3313 0 588 227 110 0 chr1 8888224 8888387 -233775966 + MIR SINE MIR 15 195 -67 1045 232 94 80 chr1 8888517 8889090 -233775263 + MLT1G1 LTR MaLR 1 581 -14 2002 119 17 3 chr1 8889273 8889567 -233774786 + AluSx SINE Alu 1 298 -14 366 271 57 8 chr1 8889873 8889995 -233774358 - MIR SINE MIR -87 175 48 1708 142 4 8 chr1 8889995 8890263 -233774090 + AluJo SINE Alu 1 267 -45 1757 119 8 26 chr1 8890365 8890633 -233773720 + AluSc SINE Alu 47 309 0 669 193 0 59 chr1 8890634 8890769 -233773584 + AluJb SINE Alu 130 256 -56 873 176 7 0 chr1 8890787 8890935 -233773418 + AluJo SINE Alu 2 150 -162 201 39 0 0 chr1 8891288 8891314 -233773039 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 250 354 47 0 chr1 8892467 8892594 -233771759 - MIR SINE MIR -1 261 129 1700 174 6 34 chr1 8892718 8893039 -233771314 - AluJo SINE Alu 0 312 1 2293 110 0 3 chr1 8893262 8893570 -233770783 - AluSc SINE Alu -2 307 1 258 240 0 27 chr1 8895278 8895353 -233769000 + CT-rich Low_complexity Low_complexity 4 76 0 320 286 129 7 chr1 8895599 8895739 -233768614 + L3 LINE CR1 1294 1450 -127 2448 52 0 3 chr1 8895961 8896247 -233768106 + AluY SINE Alu 1 285 -26 2464 74 3 0 chr1 8896424 8896721 -233767632 + AluSg SINE Alu 3 300 -10 1641 175 10 33 chr1 8897494 8897797 -233766556 - AluJo SINE Alu -16 296 1 2115 125 7 0 chr1 8897808 8898103 -233766250 - AluSq SINE Alu -16 297 1 203 116 23 23 chr1 8898157 8898200 -233766153 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 925 92 23 23 chr1 8898274 8898405 -233765948 + FLAM_A SINE Alu 8 138 -4 2540 55 0 0 chr1 8898706 8898998 -233765355 - AluSg SINE Alu -18 292 1 239 111 0 22 chr1 8901853 8901898 -233762455 - L2 LINE L2 -209 3063 3020 326 291 115 7 chr1 8902962 8903110 -233761243 - MIR SINE MIR -1 261 98 739 138 13 7 chr1 8903115 8903355 -233760998 + AluSx SINE Alu 1 308 -2 1573 157 75 7 chr1 8904239 8904519 -233759834 + AluJb SINE Alu 1 299 -13 2346 93 3 3 chr1 8906026 8906337 -233758016 + AluSq SINE Alu 1 311 -2 275 328 15 38 chr1 8907298 8907429 -233756924 - MIR SINE MIR -55 207 80 1558 152 4 4 chr1 8907462 8907705 -233756648 + AluJb SINE Alu 1 243 -69 514 210 96 48 chr1 8907802 8907969 -233756384 - MER5B DNA MER1_type -3 175 1 807 153 0 29 chr1 8908629 8908766 -233755587 - FLAM_C SINE Alu 0 133 1 2506 76 0 13 chr1 8908899 8909214 -233755139 - AluSx SINE Alu 0 312 2 1290 117 73 10 chr1 8909351 8909557 -233754796 - MER20 DNA MER1_type 0 219 1 196 319 28 14 chr1 8909801 8909873 -233754480 - L2 LINE L2 -15 3257 3185 1124 148 0 0 chr1 8911330 8911492 -233752861 - FRAM SINE Alu -16 160 1 1857 170 17 3 chr1 8911707 8912007 -233752346 + AluSx SINE Alu 1 304 -8 1827 184 113 31 chr1 8912326 8912561 -233751792 - Charlie4a DNA MER1_type -1453 508 294 1907 102 91 0 chr1 8912561 8912826 -233751527 + AluSc SINE Alu 3 291 -18 2264 66 3 3 chr1 8912828 8913116 -233751237 + AluY SINE Alu 1 288 -23 1827 184 113 31 chr1 8913116 8913328 -233751025 - Charlie4a DNA MER1_type -1667 294 21 1585 158 82 0 chr1 8913365 8913644 -233750709 + AluJb SINE Alu 1 302 -10 31 68 0 0 chr1 8913702 8913761 -233750592 + AT_rich Low_complexity Low_complexity 1 59 0 838 279 70 8 chr1 8913919 8914163 -233750190 - MIR SINE MIR -2 260 2 1710 162 44 0 chr1 8914234 8914356 -233749997 + AluJo SINE Alu 1 116 -196 189 0 0 0 chr1 8914356 8914377 -233749976 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1710 162 44 0 chr1 8914377 8914551 -233749802 + AluJo SINE Alu 116 310 -2 390 282 28 66 chr1 8914815 8915028 -233749325 - L2 LINE L2 -628 2686 2482 24 0 0 0 chr1 8918426 8918450 -233745903 + AT_rich Low_complexity Low_complexity 1 24 0 2311 69 0 0 chr1 8918636 8918925 -233745428 + AluSg1 SINE Alu 1 289 -20 323 183 0 0 chr1 8919072 8919132 -233745221 - AluJo SINE Alu -3 299 240 2212 75 0 0 chr1 8919170 8919481 -233744872 + AluSc SINE Alu 1 311 0 1393 193 0 0 chr1 8919481 8919730 -233744623 - AluJo SINE Alu -63 249 1 413 294 96 14 chr1 8919759 8919977 -233744376 + MARNA DNA Mariner 68 303 -283 1247 162 93 15 chr1 8920016 8920275 -233744078 + AluJo SINE Alu 13 291 -21 2368 79 0 0 chr1 8920277 8920580 -233743773 + AluSq SINE Alu 1 303 -10 203 159 0 127 chr1 8920648 8920711 -233743642 + A-rich Low_complexity Low_complexity 1 55 0 838 132 0 0 chr1 8921123 8921252 -233743101 + AluSp/q SINE Alu 173 301 -12 2028 107 7 0 chr1 8922303 8922627 -233741726 + AluSx SINE Alu 1 326 0 2402 70 3 0 chr1 8922953 8923253 -233741100 + AluSq SINE Alu 1 301 -12 513 224 147 0 chr1 8923900 8924043 -233740310 + MIR SINE MIR 3 166 -96 1777 167 13 10 chr1 8924747 8925058 -233739295 + AluJb SINE Alu 1 312 0 1672 171 3 7 chr1 8925342 8925629 -233738724 + AluJo SINE Alu 5 290 -22 2142 112 0 3 chr1 8925959 8926264 -233738089 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 8926561 8926584 -233737769 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 8926717 8926739 -233737614 + AT_rich Low_complexity Low_complexity 1 22 0 2279 89 3 0 chr1 8926750 8927053 -233737300 - AluSx SINE Alu -8 304 1 2445 63 0 0 chr1 8927274 8927574 -233736779 + AluY SINE Alu 1 300 -11 215 257 188 20 chr1 8928263 8928364 -233735989 - L2 LINE L2 0 3272 3155 748 181 23 8 chr1 8928365 8928498 -233735855 + AluJo SINE Alu 2 136 -176 2254 101 0 0 chr1 8928498 8928806 -233735547 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr1 8928806 8928828 -233735525 + AT_rich Low_complexity Low_complexity 1 22 0 395 88 10 0 chr1 8929138 8929200 -233735153 + Alu SINE Alu 237 288 -14 2049 104 0 4 chr1 8929313 8929592 -233734761 - AluSx SINE Alu -17 295 18 560 104 0 0 chr1 8929636 8929713 -233734640 + Alu SINE Alu 2 78 -231 1161 124 0 16 chr1 8929735 8929920 -233734433 - AluSg/x SINE Alu -2 310 129 2016 131 0 16 chr1 8929928 8930240 -233734113 - AluSc SINE Alu -2 307 1 713 227 78 0 chr1 8930475 8930629 -233733724 - MER21B LTR ERV1 -369 494 329 748 319 111 11 chr1 8931178 8931529 -233732824 + L2 LINE L2 2900 3285 -28 1456 174 11 26 chr1 8931560 8931830 -233732523 + AluJo SINE Alu 1 266 -46 2294 91 3 0 chr1 8931864 8932171 -233732182 + AluSp SINE Alu 1 308 -5 2048 102 14 10 chr1 8932185 8932479 -233731874 + AluSx SINE Alu 1 295 -17 1502 205 0 7 chr1 8932502 8932827 -233731526 + AluJb SINE Alu 10 312 0 342 67 0 0 chr1 8932857 8932902 -233731451 + (TAA)n Simple_repeat Simple_repeat 2 46 0 801 197 0 14 chr1 8933029 8933176 -233731177 + FRAM SINE Alu 2 146 -30 436 202 18 55 chr1 8933545 8933654 -233730699 + MER20B DNA MER1_type 1 105 -678 1655 155 40 10 chr1 8933876 8934173 -233730180 + AluJo SINE Alu 1 306 -6 312 293 178 19 chr1 8934176 8934333 -233730020 + L2 LINE L2 1017 1198 -2116 481 205 71 31 chr1 8934337 8934464 -233729889 - MER104 DNA Tc2 -4 176 45 1501 173 11 4 chr1 8934466 8934737 -233729616 + AluJo SINE Alu 1 273 -39 527 174 0 0 chr1 8934737 8934823 -233729530 + AluSg/x SINE Alu 130 215 -95 380 305 99 0 chr1 8935756 8935907 -233728446 + Charlie1b DNA MER1_type 147 312 -211 2322 71 0 0 chr1 8935926 8936222 -233728131 - AluSg SINE Alu -14 296 1 2014 108 3 0 chr1 8936236 8936522 -233727831 - AluSx SINE Alu -25 287 1 928 182 0 6 chr1 8936524 8936689 -233727664 - FRAM SINE Alu -15 161 1 266 239 55 37 chr1 8936731 8936748 -233727605 - L1MA10 LINE L1 0 6334 6318 2088 192 68 46 chr1 8936748 8937235 -233727118 - L1ME1 LINE L1 -5 6161 5658 1557 142 56 8 chr1 8937235 8937503 -233726850 - AluSg SINE Alu -29 281 1 2088 192 68 46 chr1 8937503 8937584 -233726769 - L1ME1 LINE L1 -508 5658 5580 2099 125 0 3 chr1 8937585 8937898 -233726455 + AluSx SINE Alu 1 312 0 935 137 18 36 chr1 8938318 8938486 -233725867 - FRAM SINE Alu -1 165 1 1622 139 10 17 chr1 8938635 8938923 -233725430 - AluSx SINE Alu -26 286 1 2099 97 3 7 chr1 8939298 8939598 -233724755 + AluSg SINE Alu 1 299 -11 1659 170 0 0 chr1 8940724 8941041 -233723312 - AluJo SINE Alu 0 317 1 23 0 0 0 chr1 8941923 8941946 -233722407 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr1 8942046 8942082 -233722271 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr1 8942138 8942160 -233722193 + AT_rich Low_complexity Low_complexity 1 22 0 657 278 129 93 chr1 8945042 8945337 -233719016 + L2 LINE L2 2225 2508 -764 1630 170 0 0 chr1 8945337 8945608 -233718745 + AluJo SINE Alu 27 297 -15 657 278 129 93 chr1 8945608 8946316 -233718037 + L2 LINE L2 2508 3272 0 509 230 139 24 chr1 8946408 8946573 -233717780 - MIR SINE MIR -29 233 50 2003 134 0 7 chr1 8947056 8947362 -233716991 + AluSx SINE Alu 1 304 -8 1730 131 48 14 chr1 8947377 8947692 -233716661 + AluJo SINE Alu 12 336 0 1796 117 44 11 chr1 8947792 8948065 -233716288 - AluSx SINE Alu -30 282 1 1428 162 21 0 chr1 8948071 8948335 -233716018 - AluJo SINE Alu 0 308 40 241 197 38 29 chr1 8948335 8948460 -233715893 - L1ME LINE L1 -282 5884 5757 1061 218 0 25 chr1 8948461 8948741 -233715612 - AluJb SINE Alu -13 299 27 2001 122 0 0 chr1 8948777 8949071 -233715282 - AluSx SINE Alu -18 294 1 2300 60 10 3 chr1 8949110 8949411 -233714942 + AluY SINE Alu 1 303 -8 2321 58 3 22 chr1 8949541 8949853 -233714500 + AluSp SINE Alu 1 306 -7 968 88 15 0 chr1 8949909 8950046 -233714307 + AluSp/q SINE Alu 165 303 -10 457 276 0 24 chr1 8950075 8950198 -233714155 + MSTB LTR MaLR 208 327 -99 906 114 0 0 chr1 8950203 8950334 -233714019 - AluSg1 SINE Alu -178 131 1 278 103 0 0 chr1 8950334 8950373 -233713980 + MSTB LTR MaLR 388 426 0 2260 91 0 7 chr1 8950433 8950740 -233713613 + AluY SINE Alu 1 305 -6 1831 104 0 0 chr1 8951149 8951408 -233712945 - AluY SINE Alu -12 299 41 914 231 124 43 chr1 8951443 8951755 -233712598 + L1MEc LINE L1 1836 2121 -4275 2027 121 7 3 chr1 8951755 8952060 -233712293 + AluSx SINE Alu 1 306 -6 914 231 124 43 chr1 8952060 8952280 -233712073 + L1MEc LINE L1 2121 2411 -3985 2032 126 10 0 chr1 8952757 8953066 -233711287 + AluSx SINE Alu 1 312 0 313 241 71 35 chr1 8953178 8953319 -233711034 + L3 LINE CR1 1404 1549 -28 240 35 0 0 chr1 8953402 8953431 -233710922 + (A)n Simple_repeat Simple_repeat 1 29 0 1353 135 0 28 chr1 8954074 8954289 -233710064 - AluJo SINE Alu -22 290 82 1902 101 4 22 chr1 8954313 8954591 -233709762 + AluSq SINE Alu 1 273 -40 182 36 0 36 chr1 8954596 8954624 -233709729 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 640 173 0 0 chr1 8954840 8954944 -233709409 + AluJb SINE Alu 2 105 -207 787 271 268 8 chr1 8954944 8955328 -233709025 + MER20B DNA MER1_type 300 783 0 2053 126 7 0 chr1 8955458 8955760 -233708593 - AluSx SINE Alu -8 304 1 1996 125 7 3 chr1 8955780 8956077 -233708276 - AluSx SINE Alu -14 298 1 23 0 0 0 chr1 8956648 8956671 -233707682 + AT_rich Low_complexity Low_complexity 1 23 0 902 181 71 16 chr1 8956673 8956855 -233707498 - AluJo SINE Alu -35 277 86 2109 106 3 7 chr1 8956892 8957195 -233707158 + AluSq SINE Alu 5 306 -7 1662 104 0 4 chr1 8957366 8957596 -233706757 - AluSx SINE Alu -83 229 1 22 0 0 0 chr1 8958167 8958189 -233706164 + AT_rich Low_complexity Low_complexity 1 22 0 902 181 71 16 chr1 8958191 8958373 -233705980 - AluJo SINE Alu -35 277 86 2201 104 0 7 chr1 8958404 8958713 -233705640 + AluSx SINE Alu 1 307 -5 687 106 19 10 chr1 8959658 8959762 -233704591 - AluSq/x SINE Alu -179 133 29 1291 109 16 0 chr1 8959877 8960069 -233704284 + AluSg/x SINE Alu 103 297 -13 1607 86 125 16 chr1 8960070 8960326 -233704027 - AluSg1 SINE Alu -16 293 10 2166 98 3 0 chr1 8960338 8960635 -233703718 - AluY SINE Alu -13 298 1 2335 63 7 7 chr1 8960715 8961015 -233703338 - AluY SINE Alu -11 300 1 2404 61 0 14 chr1 8961668 8961965 -233702388 - AluY SINE Alu -18 293 1 1951 88 95 4 chr1 8961975 8962238 -233702115 - AluSq SINE Alu -24 289 3 2425 84 3 0 chr1 8963475 8963772 -233700581 - AluSx SINE Alu -14 298 1 2603 62 0 0 chr1 8963895 8964199 -233700154 - AluY SINE Alu -7 304 1 1906 164 0 0 chr1 8964240 8964521 -233699832 + AluJb SINE Alu 1 281 -31 183 42 0 0 chr1 8964521 8964545 -233699808 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 547 294 17 23 chr1 8964600 8964777 -233699576 + L2 LINE L2 3127 3302 -11 1437 170 22 107 chr1 8964777 8964910 -233699443 + AluJo SINE Alu 1 144 -158 2165 105 14 0 chr1 8964910 8965069 -233699284 - AluSc SINE Alu -19 290 124 2199 112 3 3 chr1 8965069 8965372 -233698981 - AluSg SINE Alu -7 303 1 2165 105 14 0 chr1 8965372 8965497 -233698856 - AluSc SINE Alu -185 124 2 1445 188 114 0 chr1 8965497 8965775 -233698578 - AluJb SINE Alu 0 307 1 1437 170 22 107 chr1 8965775 8965957 -233698396 + AluJo SINE Alu 142 291 -11 246 235 160 28 chr1 8965983 8965995 -233698358 - MIR SINE MIR -49 159 150 2377 76 0 20 chr1 8965995 8966296 -233698057 - AluY SINE Alu -16 295 1 246 235 160 28 chr1 8966296 8966407 -233697946 - MIR SINE MIR -58 150 21 2266 113 27 0 chr1 8966486 8966787 -233697566 + AluSx SINE Alu 1 309 -3 2366 112 0 0 chr1 8967314 8967618 -233696735 - AluSx SINE Alu -8 304 1 688 252 81 33 chr1 8968056 8968109 -233696244 - MIR SINE MIR -10 252 203 864 186 155 26 chr1 8968109 8968303 -233696050 + MER20B DNA MER1_type 1 219 0 688 252 81 33 chr1 8968303 8968459 -233695894 - MIR SINE MIR -59 203 33 1928 109 0 0 chr1 8968549 8968796 -233695557 - AluSx SINE Alu -15 297 51 432 227 23 11 chr1 8968796 8968884 -233695469 + L2 LINE L2 3181 3269 -3 910 227 38 30 chr1 8969295 8969329 -233695024 - MIR SINE MIR -10 252 220 2276 114 0 0 chr1 8969329 8969626 -233694727 - AluSg SINE Alu -13 297 1 1992 112 73 3 chr1 8969634 8969921 -233694432 - AluSg1 SINE Alu -2 307 1 910 227 38 30 chr1 8969921 8970121 -233694232 - MIR SINE MIR -48 214 4 180 111 0 0 chr1 8970222 8970249 -233694104 + (T)n Simple_repeat Simple_repeat 1 27 0 1171 214 95 18 chr1 8970249 8970585 -233693768 + L1ME1 LINE L1 5508 5869 -297 234 0 0 0 chr1 8970721 8970747 -233693606 + (A)n Simple_repeat Simple_repeat 1 26 0 2366 112 0 0 chr1 8971274 8971578 -233692775 - AluSx SINE Alu -8 304 1 688 252 81 33 chr1 8972013 8972066 -233692287 - MIR SINE MIR -10 252 203 864 186 155 26 chr1 8972066 8972260 -233692093 + MER20B DNA MER1_type 1 219 0 688 252 81 33 chr1 8972260 8972416 -233691937 - MIR SINE MIR -59 203 33 1928 109 0 0 chr1 8972506 8972753 -233691600 - AluSx SINE Alu -15 297 51 432 227 23 11 chr1 8972753 8972841 -233691512 + L2 LINE L2 3181 3269 -3 2249 114 0 0 chr1 8973286 8973585 -233690768 - AluSx SINE Alu -13 299 1 783 222 22 16 chr1 8973835 8974020 -233690333 - MER5A DNA MER1_type 0 189 4 1912 123 18 4 chr1 8975434 8975735 -233688618 - AluSx SINE Alu 0 305 1 2417 84 0 28 chr1 8975831 8976153 -233688200 - AluSq SINE Alu 0 313 1 339 78 0 0 chr1 8976885 8976936 -233687417 + (CA)n Simple_repeat Simple_repeat 2 52 0 2302 110 3 0 chr1 8977707 8978007 -233686346 + AluSg SINE Alu 1 301 -9 2361 99 0 0 chr1 8980476 8980770 -233683583 + AluSx SINE Alu 3 296 -16 1396 99 0 0 chr1 8981953 8982134 -233682219 - AluSg/x SINE Alu -4 308 128 284 0 28 0 chr1 8982134 8982170 -233682183 + (TTA)n Simple_repeat Simple_repeat 2 38 0 2125 100 24 7 chr1 8982172 8982463 -233681890 - AluSg SINE Alu -14 296 1 2132 121 0 14 chr1 8982468 8982765 -233681588 - AluSq SINE Alu -20 293 1 1661 289 116 27 chr1 8982939 8983795 -233680558 - L2 LINE L2 -4 3309 2531 1780 136 4 25 chr1 8983795 8984074 -233680279 + AluJo SINE Alu 17 289 -23 2114 75 8 4 chr1 8984075 8984341 -233680012 + AluSq SINE Alu 33 299 -14 1661 289 116 27 chr1 8984341 8984741 -233679612 - L2 LINE L2 -781 2532 1945 2261 73 0 17 chr1 8984896 8985206 -233679147 - AluY SINE Alu 0 305 1 628 259 146 0 chr1 8985252 8985410 -233678943 - MER5A DNA MER1_type 0 189 9 826 270 116 3 chr1 8985591 8985928 -233678425 - L2 LINE L2 -1408 1906 1532 2447 92 0 3 chr1 8986034 8986338 -233678015 + AluSx SINE Alu 1 303 -9 2496 72 0 3 chr1 8986593 8986898 -233677455 - AluY SINE Alu -7 304 1 588 162 0 18 chr1 8987089 8987200 -233677153 + FLAM_A SINE Alu 33 141 -1 1947 145 24 7 chr1 8987211 8987508 -233676845 + AluJo SINE Alu 4 305 -7 332 156 0 0 chr1 8987568 8987632 -233676721 + FLAM SINE Alu 66 129 -4 230 217 14 72 chr1 8988595 8988664 -233675689 + MIR SINE MIR 20 84 -124 1017 151 6 67 chr1 8988897 8989076 -233675277 - AluSg/x SINE Alu -15 297 130 2137 77 26 4 chr1 8989083 8989355 -233674998 - AluSq SINE Alu -22 291 14 349 258 62 56 chr1 8989626 8989770 -233674583 + L1M4b LINE L1 23 479 -6376 722 188 0 16 chr1 8989770 8989898 -233674455 + FLAM_C SINE Alu 2 127 -16 2162 108 0 10 chr1 8989923 8990228 -233674125 + AluSq SINE Alu 12 313 0 2081 84 23 43 chr1 8990239 8990538 -233673815 - AluSp SINE Alu -18 295 3 2443 80 3 0 chr1 8990553 8990855 -233673498 - AluY SINE Alu -8 303 1 2408 114 0 0 chr1 8991122 8991430 -233672923 + AluSx SINE Alu 1 308 -4 2398 82 3 7 chr1 8991447 8991751 -233672602 + AluSq SINE Alu 1 303 -10 1636 168 39 39 chr1 8991936 8992246 -233672107 + AluJo SINE Alu 3 312 0 2067 150 10 3 chr1 8992253 8992559 -233671794 + AluJb SINE Alu 1 308 -4 557 214 39 73 chr1 8992569 8992687 -233671666 + L1M4b LINE L1 2220 2330 -4627 1352 181 102 8 chr1 8992687 8992952 -233671401 + AluJo SINE Alu 1 290 -22 557 214 39 73 chr1 8992952 8993039 -233671314 + L1M4b LINE L1 2330 2418 -4539 2271 114 3 0 chr1 8993039 8993338 -233671015 + AluSp SINE Alu 1 300 -13 537 222 139 0 chr1 8993985 8994129 -233670224 + MIR SINE MIR 3 166 -96 1903 162 13 19 chr1 8994833 8995147 -233669206 + AluJb SINE Alu 1 312 0 1818 171 3 7 chr1 8995427 8995714 -233668639 + AluJo SINE Alu 5 290 -22 2291 112 0 3 chr1 8996044 8996349 -233668004 + AluSx SINE Alu 1 304 -8 23 0 0 0 chr1 8996646 8996669 -233667684 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr1 8996801 8996823 -233667530 + AT_rich Low_complexity Low_complexity 1 22 0 2221 75 3 3 chr1 8996926 8997208 -233667145 + AluY SINE Alu 24 305 -6 440 262 73 43 chr1 8997794 8997993 -233666360 - MIR SINE MIR -46 216 21 838 146 0 0 chr1 8999336 8999466 -233664887 - FRAM SINE Alu 0 40 1 2257 107 3 3 chr1 8999497 8999807 -233664546 + AluSx SINE Alu 3 312 0 1065 186 0 0 chr1 8999989 9000172 -233664181 - FRAM SINE Alu -1 175 1 287 277 84 0 chr1 9000346 9000429 -233663924 + L2 LINE L2 3165 3254 -18 2420 74 3 0 chr1 9000551 9000850 -233663503 + AluSp SINE Alu 1 300 -13 292 218 46 35 chr1 9001971 9002058 -233662295 - MIR SINE MIR -57 205 118 2064 115 35 0 chr1 9002624 9002912 -233661441 - AluSx SINE Alu -14 298 1 2493 70 0 0 chr1 9003192 9003491 -233660862 - AluY SINE Alu -12 299 1 884 246 8 54 chr1 9003812 9004004 -233660349 + MIR SINE MIR 2 183 -79 2082 116 3 3 chr1 9004004 9004310 -233660043 - AluSx SINE Alu 0 306 1 884 246 8 54 chr1 9004310 9004356 -233659997 + MIR SINE MIR 183 230 -32 900 178 41 0 chr1 9004722 9004868 -233659485 - AluJb SINE Alu -28 284 133 2413 70 0 20 chr1 9004871 9005172 -233659181 - AluY SINE Alu -16 295 1 1681 192 0 0 chr1 9005216 9005497 -233658856 + AluJb SINE Alu 1 281 -31 269 150 0 0 chr1 9005525 9005565 -233658788 - Alu SINE Alu -261 40 1 294 312 135 57 chr1 9005825 9005972 -233658381 + MIR3 SINE MIR 4 172 -90 1028 190 0 6 chr1 9005972 9006146 -233658207 + FAM SINE Alu 1 173 -2 294 312 135 57 chr1 9006146 9006225 -233658128 + MIR3 SINE MIR 172 243 -19 1062 107 0 57 chr1 9006325 9006508 -233657845 - AluSg/x SINE Alu 0 307 134 2260 111 3 7 chr1 9006509 9006816 -233657537 - AluSx SINE Alu -6 306 1 675 206 72 65 chr1 9006821 9006949 -233657404 - L1MC4 LINE L1 0 8042 7916 276 30 0 0 chr1 9006949 9006982 -233657371 + (TC)n Simple_repeat Simple_repeat 2 34 0 675 206 72 65 chr1 9006982 9007174 -233657179 - L1MC4 LINE L1 -126 7916 7720 2121 110 39 26 chr1 9007241 9007549 -233656804 - AluSx SINE Alu 0 312 1 1545 162 21 0 chr1 9007555 9007819 -233656534 - AluJo SINE Alu 0 308 40 234 248 80 32 chr1 9007819 9007944 -233656409 - L1ME LINE L1 -283 5887 5757 1918 156 7 10 chr1 9007945 9008246 -233656107 - AluJb SINE Alu -12 300 1 2180 111 0 3 chr1 9008256 9008544 -233655809 - AluSx SINE Alu -18 294 8 2397 88 3 0 chr1 9008559 9008853 -233655500 - AluSc SINE Alu -14 295 1 486 214 9 9 chr1 9008857 9008969 -233655384 - L1ME LINE L1 -404 5766 5655 839 251 59 12 chr1 9008985 9009240 -233655113 - L1MC4 LINE L1 -453 7589 7323 886 170 0 0 chr1 9009290 9009425 -233654928 - AluJb SINE Alu -25 287 153 2202 117 3 3 chr1 9009437 9009736 -233654617 - AluSc SINE Alu -10 299 1 265 106 64 21 chr1 9009836 9009883 -233654470 - L1ME1 LINE L1 -55 6111 6063 706 222 81 40 chr1 9009885 9010133 -233654220 - L1ME2 LINE L1 -82 6082 5825 2095 123 3 32 chr1 9010150 9010459 -233653894 - AluSq SINE Alu -13 300 1 943 133 0 0 chr1 9010459 9010594 -233653759 - AluSq/x SINE Alu -177 135 1 879 207 62 25 chr1 9010598 9010682 -233653671 - L1ME2 LINE L1 -346 5820 5741 1929 238 136 17 chr1 9010682 9011212 -233653141 - MLT1E LTR MaLR 0 593 1 879 207 62 25 chr1 9011212 9011369 -233652984 - L1ME2 LINE L1 -425 5741 5570 1649 154 6 41 chr1 9011421 9011740 -233652613 - AluJo SINE Alu -4 308 1 2310 214 39 114 chr1 9011740 9011880 -233652473 - L1ME2 LINE L1 -1730 4416 4267 2205 87 0 7 chr1 9011880 9012179 -233652174 - AluSx SINE Alu -15 297 1 2310 214 39 114 chr1 9012179 9012519 -233651834 - L1ME2 LINE L1 -1879 4267 3903 1402 168 7 41 chr1 9012519 9012811 -233651542 + AluJo SINE Alu 1 282 -30 2213 91 0 7 chr1 9012811 9013108 -233651245 - AluSg1 SINE Alu -14 295 1 2310 214 39 114 chr1 9013108 9013595 -233650758 - L1ME2 LINE L1 -2242 3904 3382 2393 84 0 0 chr1 9013595 9013904 -233650449 - AluSc SINE Alu 0 309 1 1779 163 0 0 chr1 9013907 9014202 -233650151 - AluSx SINE Alu -17 295 1 2310 214 39 114 chr1 9014202 9014338 -233650015 - L1ME2 LINE L1 -2611 3535 3390 1659 121 0 0 chr1 9014338 9014577 -233649776 - AluSq SINE Alu -74 239 1 1891 102 46 14 chr1 9014624 9014909 -233649444 - AluSg SINE Alu -16 294 1 233 250 56 42 chr1 9016232 9016304 -233648049 + L2 LINE L2 3191 3263 -9 315 285 177 54 chr1 9016399 9016763 -233647590 + L2 LINE L2 2847 3267 -5 239 79 26 0 chr1 9016765 9016803 -233647550 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1316 132 78 5 chr1 9016896 9017115 -233647238 + MER46A DNA MER2_type 1 235 -1 244 119 30 134 chr1 9018270 9018337 -233646016 + AluJ/FRAM SINE Alu 223 282 -20 2213 91 0 7 chr1 9018337 9018634 -233645719 - AluSg1 SINE Alu -14 295 1 1260 244 47 20 chr1 9018668 9019118 -233645235 - L1M4 LINE L1 -2210 3936 3475 2393 84 0 0 chr1 9019121 9019430 -233644923 - AluSc SINE Alu 0 309 1 1831 156 0 0 chr1 9019433 9019728 -233644625 - AluSx SINE Alu -17 295 1 388 292 18 18 chr1 9019750 9019863 -233644490 - L1M4 LINE L1 -2647 3499 3387 1659 121 0 0 chr1 9019865 9020104 -233644249 - AluSq SINE Alu -74 239 1 1753 271 100 25 chr1 9020109 9020151 -233644202 - L1MEc LINE L1 -5331 1065 1028 2272 70 0 13 chr1 9020151 9020450 -233643903 - AluY SINE Alu -16 295 1 1753 271 100 25 chr1 9020450 9020633 -233643720 - L1MEc LINE L1 -5368 1028 860 2339 75 0 0 chr1 9020633 9020928 -233643425 - AluSp SINE Alu -18 295 1 1753 271 100 25 chr1 9020928 9021658 -233642695 - L1MEc LINE L1 -5536 860 37 233 186 0 0 chr1 9021659 9021702 -233642651 - L2 LINE L2 -565 2749 2707 * 411 207 71 71 chr1 9021686 9021826 -233642527 - MIR SINE MIR -59 203 64 1805 139 37 7 chr1 9022348 9022642 -233641711 - AluJb SINE Alu -9 303 1 808 114 18 0 chr1 9022700 9022814 -233641539 - AluSq/x SINE Alu -196 116 1 239 178 44 100 chr1 9022885 9022975 -233641378 + AluSc SINE Alu 119 169 -130 1494 161 51 15 chr1 9023033 9023307 -233641046 - AluJo SINE Alu -17 295 12 2042 130 0 7 chr1 9023322 9023630 -233640723 - AluSx SINE Alu -6 306 1 509 230 139 24 chr1 9024113 9024278 -233640075 + MIR SINE MIR 50 233 -29 657 278 129 93 chr1 9024370 9025078 -233639275 - L2 LINE L2 0 3272 2508 1630 170 0 0 chr1 9025078 9025349 -233639004 - AluJo SINE Alu -15 297 27 657 278 129 93 chr1 9025349 9025644 -233638709 - L2 LINE L2 -764 2508 2225 22 0 0 0 chr1 9028526 9028548 -233635805 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr1 9028604 9028640 -233635713 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr1 9028740 9028763 -233635590 + AT_rich Low_complexity Low_complexity 1 23 0 1645 174 0 0 chr1 9029645 9029967 -233634386 + AluJo SINE Alu 1 322 0 2279 87 0 0 chr1 9031093 9031393 -233632960 - AluSg SINE Alu -10 300 1 1683 113 117 11 chr1 9031768 9032050 -233632303 + AluSx SINE Alu 1 312 0 1965 137 0 0 chr1 9032226 9032519 -233631834 - AluSx SINE Alu -19 293 1 2219 51 19 29 chr1 9032939 9033251 -233631102 - AluY SINE Alu -2 309 1 1545 170 25 11 chr1 9033283 9033565 -233630788 + AluJb SINE Alu 1 286 -26 1895 141 0 16 chr1 9034436 9034749 -233629604 - AluJo SINE Alu -4 308 1 962 96 0 0 chr1 9034825 9034960 -233629393 + AluSg/x SINE Alu 178 312 0 2139 119 7 0 chr1 9035365 9035675 -233628678 - AluSx SINE Alu 0 312 1 385 190 20 10 chr1 9036348 9036448 -233627905 + CT-rich Low_complexity Low_complexity 5 105 0 1786 116 11 22 chr1 9036454 9036731 -233627622 - AluSx SINE Alu -38 274 1 1387 162 102 4 chr1 9036829 9037095 -233627258 + AluJo SINE Alu 1 292 -20 31 0 0 0 chr1 9037164 9037195 -233627158 + AT_rich Low_complexity Low_complexity 1 31 0 668 203 8 0 chr1 9037195 9037318 -233627035 - FLAM_C SINE Alu -19 124 1 2043 109 0 0 chr1 9037326 9037602 -233626751 - AluSx SINE Alu -16 296 21 2084 92 13 13 chr1 9037913 9038218 -233626135 - AluSp SINE Alu -8 305 1 316 283 217 7 chr1 9038743 9038895 -233625458 - MIR SINE MIR -55 207 24 2192 57 54 3 chr1 9039836 9040132 -233624221 - AluY SINE Alu 0 311 1 2266 56 0 40 chr1 9040585 9040889 -233623464 - AluY SINE Alu -18 293 2 189 264 92 35 chr1 9041914 9042001 -233622352 + L2 LINE L2 3213 3304 -9 251 196 20 0 chr1 9042314 9042365 -233621988 + L2 LINE L2 3262 3313 0 238 285 8 32 chr1 9042862 9043000 -233621353 + T-rich Low_complexity Low_complexity 1 134 0 2180 84 3 0 chr1 9043607 9043893 -233620460 - AluY SINE Alu -24 287 1 2107 103 3 13 chr1 9044320 9044632 -233619721 - AluSc SINE Alu 0 309 1 225 211 0 0 chr1 9045718 9045770 -233618583 + A-rich Low_complexity Low_complexity 1 52 0 375 23 0 0 chr1 9045792 9045836 -233618517 + (TG)n Simple_repeat Simple_repeat 1 44 0 1160 156 8 181 chr1 9051414 9051773 -233612580 - AluJb SINE Alu -5 297 1 1881 144 3 25 chr1 9051788 9052107 -233612246 - AluJb SINE Alu 0 312 1 324 256 179 89 chr1 9052576 9052889 -233611464 - HAL1 LINE L1 -1292 1215 875 344 286 70 41 chr1 9053158 9053329 -233611024 - MIR SINE MIR -50 212 37 560 264 130 13 chr1 9053952 9054183 -233610170 + L3 LINE CR1 1279 1536 -41 1892 115 4 18 chr1 9054287 9054566 -233609787 + LTR8 LTR ERV1 417 691 0 854 185 33 0 chr1 9054586 9054737 -233609616 + FRAM SINE Alu 1 155 -21 1981 107 4 0 chr1 9054737 9055007 -233609346 + AluSx SINE Alu 1 271 -41 182 36 0 36 chr1 9055013 9055041 -233609312 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 640 173 0 0 chr1 9055257 9055361 -233608992 + AluJb SINE Alu 2 105 -207 728 279 268 8 chr1 9055361 9055745 -233608608 + MER20B DNA MER1_type 300 783 0 2053 126 7 0 chr1 9055875 9056177 -233608176 - AluSx SINE Alu -8 304 1 2069 105 7 0 chr1 9056197 9056493 -233607860 - AluSx SINE Alu -14 298 1 1536 155 119 10 chr1 9056666 9056969 -233607384 + MER44D DNA MER2_type 1 606 -3 228 293 17 0 chr1 9057008 9057066 -233607287 + LTR67 LTR ERVL 122 180 -377 2134 97 0 10 chr1 9057542 9057842 -233606511 - AluY SINE Alu -14 297 1 2158 103 7 0 chr1 9057842 9058143 -233606210 - AluSx SINE Alu -9 303 1 698 239 0 136 chr1 9058287 9058373 -233605980 - MIR SINE MIR -12 250 154 1728 175 0 3 chr1 9058373 9058665 -233605688 - AluJo SINE Alu -21 291 1 698 239 0 136 chr1 9058665 9058821 -233605532 - MIR SINE MIR -108 154 41 2538 191 57 45 chr1 9058960 9059364 -233604989 + L1ME1 LINE L1 5516 5914 -420 1895 137 10 13 chr1 9059364 9059671 -233604682 + AluJb SINE Alu 1 306 -6 2538 191 57 45 chr1 9059671 9059921 -233604432 + L1ME1 LINE L1 5914 6334 0 333 234 176 21 chr1 9060036 9060153 -233604200 + MIR SINE MIR 14 147 -61 229 191 0 21 chr1 9060187 9060234 -233604119 - L2 LINE L2 -1 3312 3267 180 309 94 40 chr1 9060357 9060506 -233603847 + L2 LINE L2 2551 2707 -607 1500 182 27 0 chr1 9060526 9060784 -233603569 + AluJo SINE Alu 1 265 -47 1003 119 0 13 chr1 9060992 9061143 -233603210 + AluSg1 SINE Alu 1 149 -160 280 335 12 24 chr1 9061317 9061487 -233602866 + T-rich Low_complexity Low_complexity 2 169 0 1983 143 0 0 chr1 9061670 9061963 -233602390 - AluSg SINE Alu -17 293 1 2145 95 3 0 chr1 9061965 9062259 -233602094 - AluY SINE Alu -16 295 1 1801 124 11 0 chr1 9062261 9062526 -233601827 - AluSx SINE Alu -11 301 34 1594 97 8 53 chr1 9062631 9062878 -233601475 - MER46A DNA MER2_type 0 236 1 2119 119 7 3 chr1 9062971 9063274 -233601079 + AluSx SINE Alu 1 304 -8 2294 90 3 0 chr1 9063280 9063581 -233600772 + AluSc SINE Alu 1 302 -7 1808 156 19 10 chr1 9063706 9064014 -233600339 - AluSx SINE Alu -1 311 1 23 33 0 0 chr1 9067699 9067729 -233596624 + AT_rich Low_complexity Low_complexity 1 30 0 294 346 6 13 chr1 9070397 9070553 -233593800 + CT-rich Low_complexity Low_complexity 1 155 0 210 143 0 0 chr1 9071820 9071855 -233592498 + (TG)n Simple_repeat Simple_repeat 1 35 0 640 276 51 70 chr1 9074037 9074349 -233590004 - L2 LINE L2 -8 3305 3000 27 0 0 0 chr1 9075058 9075085 -233589268 + AT_rich Low_complexity Low_complexity 1 27 0 337 283 10 30 chr1 9077225 9077324 -233587029 - MER81 DNA DNA 0 114 18 394 283 118 56 chr1 9078137 9078528 -233585825 - L1MC4a LINE L1 -297 5824 5759 2186 107 0 0 chr1 9078528 9078837 -233585516 + AluY SINE Alu 1 309 -2 1325 163 57 43 chr1 9079570 9079852 -233584501 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr1 9079852 9079882 -233584471 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1 9080711 9080733 -233583620 + AT_rich Low_complexity Low_complexity 1 22 0 306 225 36 63 chr1 9080961 9081072 -233583281 + MIR3 SINE MIR 101 208 0 914 43 58 0 chr1 9131815 9131953 -233532400 - MER30 DNA MER1_type -80 150 5 363 248 0 117 chr1 9132127 9132264 -233532089 + L1MCa LINE L1 1996 2116 -4310 236 266 115 35 chr1 9132413 9132438 -233531915 - L2 LINE L2 -154 3118 3096 1795 134 0 0 chr1 9132438 9132692 -233531661 + AluSx SINE Alu 1 254 -58 236 266 115 35 chr1 9132692 9132779 -233531574 - L2 LINE L2 -176 3096 2997 764 248 6 81 chr1 9134208 9134474 -233529879 - MIR SINE MIR 0 262 17 222 261 43 0 chr1 9134550 9134619 -233529734 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 9134625 9134678 -233529675 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 222 240 40 40 chr1 9134683 9134758 -233529595 + MIR SINE MIR 74 148 -114 2191 110 3 0 chr1 9134760 9135060 -233529293 + AluSx SINE Alu 2 302 -10 2315 81 7 3 chr1 9135108 9135415 -233528938 + AluSx SINE Alu 4 311 -1 273 221 0 186 chr1 9135415 9135614 -233528739 - Charlie5 DNA MER1_type -62 2550 2389 230 217 22 0 chr1 9136379 9136425 -233527928 - L2 LINE L2 -15 3298 3252 2259 105 3 0 chr1 9136486 9136790 -233527563 + AluSx SINE Alu 1 305 -7 188 250 0 0 chr1 9136792 9136832 -233527521 + L2 LINE L2 3214 3253 -19 574 271 21 7 chr1 9137682 9137826 -233526527 - MIR3 SINE MIR -62 146 1 187 355 66 0 chr1 9137972 9138048 -233526305 + MIR3 SINE MIR 74 154 -54 242 287 0 11 chr1 9138202 9138296 -233526057 - MER113 DNA MER1_type? -394 127 35 288 209 25 106 chr1 9139152 9139328 -233525025 + MIR SINE MIR 11 250 -12 365 300 60 27 chr1 9139472 9139622 -233524731 + MIR3 SINE MIR 40 194 -14 341 287 117 21 chr1 9141076 9141275 -233523078 + MIR3 SINE MIR 5 215 -47 594 202 30 98 chr1 9141359 9141562 -233522791 - MER5A DNA MER1_type 0 189 1 328 325 28 0 chr1 9141919 9142034 -233522319 - MIR3 SINE MIR -39 169 51 1854 120 56 0 chr1 9142128 9142424 -233521929 + AluSx SINE Alu 1 311 0 188 289 145 12 chr1 9142983 9143066 -233521287 - MIR SINE MIR -93 115 22 1796 102 0 0 chr1 9143401 9143658 -233520695 + AluSg SINE Alu 48 304 0 300 290 243 22 chr1 9143788 9144335 -233520018 + L2 LINE L2 2643 3306 -7 645 267 42 42 chr1 9145464 9145704 -233518649 - MIR SINE MIR -19 243 4 2096 129 3 0 chr1 9147384 9147686 -233516667 + AluSx SINE Alu 1 303 -9 196 321 49 12 chr1 9148301 9148382 -233515971 - MIR SINE MIR -77 185 102 2144 117 7 7 chr1 9148469 9148776 -233515577 - AluSx SINE Alu -5 307 1 633 266 59 20 chr1 9148974 9149177 -233515176 - MER20B DNA MER1_type -8 211 1 371 329 99 0 chr1 9149183 9149400 -233514953 + Charlie8 DNA MER1_type 4 228 -2189 1713 167 3 48 chr1 9149593 9149724 -233514629 + AluJo SINE Alu 1 136 -176 1930 120 67 0 chr1 9149724 9150008 -233514345 + AluSq SINE Alu 1 303 -10 1713 167 3 48 chr1 9150008 9150188 -233514165 + AluJo SINE Alu 136 298 -14 251 222 0 0 chr1 9150188 9150233 -233514120 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 205 327 34 93 chr1 9150476 9150681 -233513672 - L2 LINE L2 -4 3268 3076 1796 135 66 0 chr1 9150965 9151254 -233513099 - AluSx SINE Alu -4 308 1 304 329 64 43 chr1 9151256 9151396 -233512957 + L2 LINE L2 3125 3267 -5 428 247 123 26 chr1 9152034 9152188 -233512165 - MIR SINE MIR -21 241 73 2430 71 3 0 chr1 9152616 9152925 -233511428 + AluY SINE Alu 1 310 -1 1181 183 190 15 chr1 9153073 9153336 -233511017 - AluJb SINE Alu -3 309 1 2364 90 0 3 chr1 9154004 9154314 -233510039 + AluSq SINE Alu 1 309 -4 2480 49 0 7 chr1 9154915 9155220 -233509133 - AluY SINE Alu -8 303 1 352 331 47 0 chr1 9156783 9156910 -233507443 - L3 LINE CR1 -11 1566 1434 448 214 10 0 chr1 9157591 9157689 -233506664 + MER81 DNA DNA 1 99 -15 190 278 113 31 chr1 9157915 9158012 -233506341 - MIR3 SINE MIR -5 203 99 1947 115 3 72 chr1 9158469 9158794 -233505559 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr1 9159645 9159667 -233504686 + GC_rich Low_complexity Low_complexity 1 22 0 308 293 13 0 chr1 9159949 9160024 -233504329 + L2 LINE L2 3186 3261 -11 1662 134 69 79 chr1 9160025 9160330 -233504023 + AluSx SINE Alu 1 302 -10 255 226 32 0 chr1 9160378 9160440 -233503913 + CT-rich Low_complexity Low_complexity 2 65 0 379 287 87 7 chr1 9160465 9160527 -233503826 + Charlie8 DNA MER1_type 21 77 -264 2325 106 0 3 chr1 9160527 9160829 -233503524 + AluSx SINE Alu 1 301 -11 379 287 87 7 chr1 9160829 9160916 -233503437 + Charlie8 DNA MER1_type 77 182 -159 698 270 74 5 chr1 9161007 9161196 -233503157 + MIR SINE MIR 51 252 -10 1527 165 0 0 chr1 9161201 9161431 -233502922 + AluJo SINE Alu 1 230 -82 2225 107 0 0 chr1 9161470 9161784 -233502569 + AluSx SINE Alu 1 314 0 2214 119 0 0 chr1 9163000 9163294 -233501059 - AluSx SINE Alu -18 294 1 313 272 119 0 chr1 9163318 9163402 -233500951 - MIR SINE MIR -63 145 55 870 144 0 8 chr1 9163810 9163942 -233500411 + AluJb SINE Alu 6 136 -176 1573 137 144 4 chr1 9163943 9164206 -233500147 + AluSx SINE Alu 3 302 0 335 292 186 40 chr1 9164319 9164545 -233499808 - L2 LINE L2 0 3272 3014 191 83 0 0 chr1 9164568 9164592 -233499761 + L2 LINE L2 3199 3222 -91 523 280 151 5 chr1 9165010 9165228 -233499125 + L2 LINE L2 2500 2749 -565 1962 152 7 0 chr1 9165230 9165526 -233498827 + AluSx SINE Alu 1 298 -14 1750 225 62 18 chr1 9165703 9166198 -233498155 + L2 LINE L2 2787 3307 -6 2269 113 3 6 chr1 9166198 9166509 -233497844 + AluSq SINE Alu 1 310 -3 1106 143 6 6 chr1 9166509 9166684 -233497669 + AluSq SINE Alu 126 300 -13 226 237 151 11 chr1 9166714 9166807 -233497546 + L1ME4a LINE L1 6005 6110 -11 602 295 133 26 chr1 9168095 9168441 -233495912 - L2 LINE L2 0 3313 2931 535 106 11 11 chr1 9168602 9168696 -233495657 + (GGAA)n Simple_repeat Simple_repeat 2 95 0 2315 86 7 3 chr1 9168854 9169144 -233495209 + AluSx SINE Alu 1 291 -21 565 123 40 0 chr1 9169183 9169284 -233495069 - MER5A DNA MER1_type -80 102 4 1485 176 26 40 chr1 9169372 9169674 -233494679 + AluJo SINE Alu 2 299 -13 520 212 33 46 chr1 9169787 9169938 -233494415 + L2 LINE L2 2632 2780 -534 721 236 16 147 chr1 9169949 9170372 -233493981 + L2 LINE L2 2888 3255 -17 355 260 24 79 chr1 9170457 9170584 -233493769 + L2 LINE L2 3141 3260 -12 361 304 84 9 chr1 9170978 9171113 -233493240 + MIR SINE MIR 21 163 -45 1706 220 31 96 chr1 9171162 9171217 -233493136 + MER77 LTR ERV1 84 141 -464 938 99 0 57 chr1 9171217 9171358 -233492995 + FLAM_C SINE Alu 1 133 0 1706 220 31 96 chr1 9171358 9171503 -233492850 + MER77 LTR ERV1 141 294 -311 2260 118 3 0 chr1 9171503 9171808 -233492545 + AluSx SINE Alu 1 306 -6 1706 220 31 96 chr1 9171808 9171999 -233492354 + MER77 LTR ERV1 294 432 -173 6501 117 144 24 chr1 9171999 9173140 -233491213 + MER52C LTR ERV1 1 1278 0 1706 220 31 96 chr1 9173140 9173300 -233491053 + MER77 LTR ERV1 432 601 -4 232 276 29 48 chr1 9173356 9173401 -233490952 + MIR SINE MIR 146 190 -72 2068 137 0 37 chr1 9173401 9173537 -233490816 + AluSx SINE Alu 1 141 -171 2399 88 3 3 chr1 9173537 9173843 -233490510 + AluSg SINE Alu 1 306 -4 2068 137 0 37 chr1 9173843 9174027 -233490326 + AluSx SINE Alu 141 309 -3 232 276 29 48 chr1 9174027 9174086 -233490267 + MIR SINE MIR 190 248 -14 417 241 292 15 chr1 9174121 9174316 -233490037 + MIR SINE MIR 14 262 0 2272 76 0 54 chr1 9174745 9175061 -233489292 - AluSg1 SINE Alu -10 299 1 1807 149 0 14 chr1 9175285 9175566 -233488787 + AluJb SINE Alu 1 277 -35 278 105 0 0 chr1 9175566 9175604 -233488749 - Alu SINE Alu -261 38 1 2117 94 4 0 chr1 9175628 9175917 -233488436 + AluSx SINE Alu 16 305 0 1368 208 83 0 chr1 9175920 9176247 -233488106 - LTR37A LTR ERV1 -55 371 18 2055 133 3 10 chr1 9176300 9176601 -233487752 + AluSq SINE Alu 2 300 -13 511 14 0 56 chr1 9176605 9176676 -233487677 - AluJb SINE Alu -161 151 85 1989 159 0 3 chr1 9176812 9177107 -233487246 + AluJo SINE Alu 2 295 -17 360 281 84 94 chr1 9177126 9177376 -233486977 - L2 LINE L2 -338 2976 2728 2131 123 0 13 chr1 9177376 9177676 -233486677 - AluSx SINE Alu -14 298 3 360 281 84 94 chr1 9177676 9177745 -233486608 - L2 LINE L2 -586 2728 2660 776 271 95 7 chr1 9177840 9178146 -233486207 + L1ME3A LINE L1 5498 5830 -340 2301 109 3 0 chr1 9178150 9178452 -233485901 + AluSq SINE Alu 1 303 -10 1788 178 3 10 chr1 9179551 9179843 -233484510 + AluJo SINE Alu 1 290 -22 231 88 0 0 chr1 9179844 9179878 -233484475 + (GA)n Simple_repeat Simple_repeat 1 34 0 375 92 13 40 chr1 9179879 9179955 -233484398 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 1964 168 0 0 chr1 9180847 9181144 -233483209 + AluJo SINE Alu 1 297 -15 2137 137 3 3 chr1 9181146 9181459 -233482894 + AluSq SINE Alu 1 313 0 1043 114 0 0 chr1 9181473 9181604 -233482749 + AluSg SINE Alu 1 131 -179 2117 104 10 0 chr1 9181861 9182150 -233482203 - AluY SINE Alu -19 292 1 2402 81 3 16 chr1 9182150 9182459 -233481894 - AluSq SINE Alu -8 305 1 2142 130 0 0 chr1 9182470 9182763 -233481590 - AluSx SINE Alu -19 293 1 200 296 56 0 chr1 9182772 9182826 -233481527 + L2 LINE L2 3002 3058 -214 619 281 0 18 chr1 9183113 9183284 -233481069 + LTR67 LTR ERVL 4 171 -386 463 264 88 7 chr1 9183551 9183699 -233480654 - L1ME1 LINE L1 -8 6158 5999 927 177 17 43 chr1 9183699 9183817 -233480536 - MER63 DNA MER1_type 0 1060 940 2542 43 0 20 chr1 9183817 9184116 -233480237 + AluY SINE Alu 1 293 -18 927 177 17 43 chr1 9184116 9184159 -233480194 - MER63 DNA MER1_type -120 940 897 1980 166 7 0 chr1 9184159 9184467 -233479886 + AluJb SINE Alu 1 310 -2 927 177 17 43 chr1 9184467 9184536 -233479817 - MER63 DNA MER1_type -163 897 835 279 0 0 0 chr1 9184542 9184573 -233479780 + (TTA)n Simple_repeat Simple_repeat 2 32 0 699 195 0 9 chr1 9184576 9184689 -233479664 - FLAM_C SINE Alu -26 117 6 2279 181 12 2 chr1 9184691 9185104 -233479249 - MER63 DNA MER1_type -212 849 433 670 228 37 7 chr1 9185104 9185314 -233479039 - MER110A LTR ERV1 0 468 272 2597 61 7 0 chr1 9185314 9185624 -233478729 + AluSx SINE Alu 1 312 0 597 228 8 8 chr1 9185759 9185886 -233478467 + L2 LINE L2 3187 3313 0 322 358 25 31 chr1 9185904 9186066 -233478287 - L2 LINE L2 -218 3054 2894 211 323 85 49 chr1 9186051 9186215 -233478138 + MIR SINE MIR 14 183 -79 * 1159 119 0 0 chr1 9186287 9186438 -233477915 + AluSq/x SINE Alu 1 151 -162 1766 179 7 16 chr1 9186814 9187121 -233477232 + AluJo SINE Alu 1 304 -8 594 0 0 0 chr1 9187121 9187187 -233477166 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 207 69 0 0 chr1 9187186 9187215 -233477138 + (CAAGC)n Simple_repeat Simple_repeat 2 30 0 * 1929 130 0 7 chr1 9187219 9187488 -233476865 + AluSx SINE Alu 13 279 -33 186 43 0 0 chr1 9187488 9187511 -233476842 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 389 309 40 34 chr1 9187592 9187741 -233476612 - MIR SINE MIR -74 188 39 328 303 11 68 chr1 9187886 9188062 -233476291 + L1ME LINE L1 5350 5515 -655 211 270 180 34 chr1 9188148 9188237 -233476116 + MIR SINE MIR 123 224 -38 275 167 154 26 chr1 9188269 9188347 -233476006 + L2 LINE L2 3188 3275 -38 1914 118 0 18 chr1 9188477 9188581 -233475772 + AluSx SINE Alu 33 137 -175 2280 101 0 7 chr1 9188581 9188887 -233475466 + AluSx SINE Alu 1 304 -8 1914 118 0 18 chr1 9188887 9189054 -233475299 + AluSx SINE Alu 137 299 -13 1836 139 0 94 chr1 9189056 9189395 -233474958 + AluJb SINE Alu 1 307 -5 1963 112 23 3 chr1 9189421 9189724 -233474629 - AluSg SINE Alu -1 309 1 240 91 0 0 chr1 9189724 9189757 -233474596 - MER58 DNA MER1_type -32 2388 2356 288 221 104 0 chr1 9189769 9189846 -233474507 - MER58 DNA MER1_type -110 231 147 1788 169 27 3 chr1 9189848 9190143 -233474210 - AluSg SINE Alu -8 302 1 651 234 50 0 chr1 9190164 9190305 -233474048 - AluJb SINE Alu -23 289 142 354 290 25 6 chr1 9190446 9190608 -233473745 + (CA)n Simple_repeat Simple_repeat 2 166 0 427 302 13 0 chr1 9190648 9190797 -233473556 + (CA)n Simple_repeat Simple_repeat 2 152 0 421 321 12 2 chr1 9190851 9191362 -233472991 + (CA)n Simple_repeat Simple_repeat 1 516 0 260 256 22 0 chr1 9191390 9191578 -233472775 + (CA)n Simple_repeat Simple_repeat 1 192 0 275 272 123 21 chr1 9193390 9193818 -233470535 + L1ME LINE L1 5189 5671 -450 311 280 75 9 chr1 9193838 9193945 -233470408 + L1M4 LINE L1 3016 3129 -3017 * 554 346 97 29 chr1 9193942 9194486 -233469867 - L1 LINE L1 -3261 2885 2305 241 161 71 0 chr1 9194487 9194543 -233469810 - FAM SINE Alu 0 179 120 1081 180 10 15 chr1 9194543 9194749 -233469604 - AluJo SINE Alu -107 205 1 586 228 183 13 chr1 9195060 9195317 -233469036 - L1ME3 LINE L1 -1 6163 5876 1600 56 9 56 chr1 9195424 9195640 -233468713 - AluY SINE Alu -50 261 56 486 309 66 37 chr1 9195650 9196000 -233468353 + L1ME LINE L1 75 434 -5636 1228 297 80 54 chr1 9196236 9197237 -233467116 + L1ME LINE L1 570 1609 -4652 4066 116 7 0 chr1 9197237 9197787 -233466566 - MER41A LTR ERV1 0 554 1 1228 297 80 54 chr1 9197787 9198018 -233466335 + L1ME LINE L1 1609 1833 -4428 2108 140 0 0 chr1 9198024 9198316 -233466037 - AluSx SINE Alu -16 296 5 285 231 102 0 chr1 9198417 9198525 -233465828 + L1ME LINE L1 1842 1960 -4301 23 0 0 0 chr1 9198594 9198617 -233465736 + AT_rich Low_complexity Low_complexity 1 23 0 445 239 341 0 chr1 9198634 9198810 -233465543 - MIR SINE MIR -24 238 3 374 147 28 6 chr1 9198894 9199007 -233465346 - MLT2F LTR ERVL 0 663 479 2359 107 0 0 chr1 9199091 9199399 -233464954 - AluSg1 SINE Alu -1 308 1 580 330 122 42 chr1 9199406 9199948 -233464405 - L1M4 LINE L1 -1467 4679 4095 333 315 0 0 chr1 9200084 9200176 -233464177 - L2 LINE L2 0 3313 3222 186 71 0 0 chr1 9200518 9200546 -233463807 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 2024 119 0 11 chr1 9200546 9200832 -233463521 - AluSx SINE Alu -29 283 1 1865 180 0 19 chr1 9201000 9201317 -233463036 - AluJb SINE Alu -1 311 1 1492 252 225 21 chr1 9201317 9202190 -233462163 - L2 LINE L2 -9 3304 2239 1045 195 20 76 chr1 9202190 9202493 -233461860 + L1MC4 LINE L1 7756 8041 -1 546 216 37 6 chr1 9202489 9202651 -233461702 + L1ME4a LINE L1 1615 1781 -4615 * 252 151 132 0 chr1 9202870 9202923 -233461430 - Charlie1 DNA MER1_type -4 2757 2698 587 251 120 0 chr1 9202923 9203098 -233461255 + L1MC4a LINE L1 7089 7284 -524 923 253 101 29 chr1 9203111 9203433 -233460920 + L1ME4a LINE L1 2134 2431 -3784 1866 124 87 0 chr1 9203433 9203708 -233460645 + AluSx SINE Alu 1 299 -13 923 253 101 29 chr1 9203708 9203990 -233460363 + L1ME4a LINE L1 2431 2737 -3478 944 245 162 10 chr1 9203998 9204312 -233460041 + L1ME4a LINE L1 5444 5805 -434 317 247 71 0 chr1 9204332 9204417 -233459936 + L1ME4a LINE L1 5866 5956 -283 639 85 47 0 chr1 9204523 9204629 -233459724 + Tigger7 DNA MER2_type 412 522 -1965 465 182 0 82 chr1 9204611 9204721 -233459632 + Tigger7 DNA MER2_type 2387 2487 0 * 27 29 0 0 chr1 9204757 9204791 -233459562 + AT_rich Low_complexity Low_complexity 1 34 0 1425 120 37 14 chr1 9205148 9205245 -233459108 - AluJo SINE Alu -91 221 128 297 0 0 0 chr1 9205245 9205278 -233459075 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1425 120 37 14 chr1 9205278 9205396 -233458957 - AluJo SINE Alu -184 128 1 317 255 142 7 chr1 9205396 9205537 -233458816 - L1ME LINE L1 -429 5692 5533 303 321 42 1 chr1 9205702 9205850 -233458503 + MIR SINE MIR 12 165 -60 199 247 112 11 chr1 9205959 9206048 -233458305 + MIR SINE MIR 165 262 0 367 240 10 30 chr1 9206053 9206153 -233458200 + L1ME4a LINE L1 6083 6180 -10 378 0 0 0 chr1 9207319 9207361 -233456992 + (TG)n Simple_repeat Simple_repeat 1 42 0 186 268 0 18 chr1 9207589 9207645 -233456708 + MIR SINE MIR 93 147 -61 268 340 35 28 chr1 9212265 9212406 -233451947 + MIR3 SINE MIR 22 163 -45 2264 78 0 3 chr1 9215822 9216117 -233448236 + AluSq SINE Alu 1 294 -19 2227 110 0 3 chr1 9216119 9216428 -233447925 + AluSx SINE Alu 1 308 -4 817 95 32 8 chr1 9216536 9216662 -233447691 + AluYb8 SINE Alu 1 129 -189 2356 92 0 0 chr1 9216664 9216969 -233447384 + AluSq SINE Alu 1 305 -8 250 303 129 28 chr1 9219706 9219884 -233444469 - L2 LINE L2 -1 3271 3076 1400 169 50 29 chr1 9220038 9220317 -233444036 + AluJo SINE Alu 20 304 -8 221 348 37 30 chr1 9220656 9220791 -233443562 + L2 LINE L2 3031 3166 -106 207 386 55 8 chr1 9221150 9221277 -233443076 - L2 LINE L2 -219 3053 2921 1056 262 98 27 chr1 9221755 9222163 -233442190 - MLT1J LTR MaLR 0 511 75 3530 204 44 40 chr1 9222542 9223669 -233440684 - L1ME2 LINE L1 0 6164 5039 1247 149 0 0 chr1 9223670 9223865 -233440488 - AluJb SINE Alu -30 282 88 756 234 26 48 chr1 9223883 9224064 -233440289 - L1ME2 LINE L1 -1113 5033 4856 2339 94 0 0 chr1 9224064 9224371 -233439982 + AluSq SINE Alu 1 307 -6 756 234 26 48 chr1 9224371 9224416 -233439937 - L1ME2 LINE L1 -1290 4856 4812 21 0 0 0 chr1 9224416 9224437 -233439916 + AT_rich Low_complexity Low_complexity 1 21 0 2659 214 22 5 chr1 9224443 9224998 -233439355 - L1MB8 LINE L1 -14 6164 5601 1146 204 23 87 chr1 9225033 9225290 -233439063 - L1ME1 LINE L1 -3 6443 6207 2201 110 0 0 chr1 9225290 9225598 -233438755 + AluSx SINE Alu 4 311 -1 1146 204 23 87 chr1 9225598 9225754 -233438599 - L1ME1 LINE L1 -239 6207 6043 210 188 58 0 chr1 9225754 9225823 -233438530 + (TA)n Simple_repeat Simple_repeat 1 73 0 388 240 39 10 chr1 9225855 9225959 -233438394 - L1ME1 LINE L1 -1024 5402 5296 318 269 0 77 chr1 9225989 9226093 -233438260 - L1ME1 LINE L1 -4336 2090 1995 2197 80 3 38 chr1 9226156 9226469 -233437884 - AluSp SINE Alu -3 310 9 210 305 17 0 chr1 9226530 9226589 -233437764 + CT-rich Low_complexity Low_complexity 1 60 0 254 271 36 100 chr1 9226590 9226649 -233437704 - MER58C DNA MER1_type -84 131 70 1825 107 9 79 chr1 9226649 9226967 -233437386 + AluSx SINE Alu 1 296 -16 254 271 36 100 chr1 9226967 9227047 -233437306 - MER58C DNA MER1_type -145 70 1 2534 193 37 19 chr1 9227054 9228006 -233436347 - L1ME LINE L1 -378 5786 4817 702 317 160 24 chr1 9230979 9231478 -233432875 + L1MC/D LINE L1 5254 5820 -1988 1615 150 66 0 chr1 9232519 9232806 -233431547 + 7SLRNA srpRNA srpRNA 1 306 -14 567 256 180 14 chr1 9234439 9234650 -233429703 + MIR SINE MIR 1 246 -16 2165 100 7 0 chr1 9234999 9235298 -233429055 - AluSx SINE Alu -11 301 1 2217 88 0 31 chr1 9235507 9235826 -233428527 + AluY SINE Alu 1 309 -2 1517 168 27 30 chr1 9235853 9235975 -233428378 + AluJb SINE Alu 3 124 -188 369 0 0 0 chr1 9235975 9236016 -233428337 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 1517 168 27 30 chr1 9236016 9236190 -233428163 + AluJb SINE Alu 124 298 -14 2022 116 0 49 chr1 9236190 9236517 -233427836 + AluSx SINE Alu 1 312 0 22 0 0 0 chr1 9236868 9236890 -233427463 + AT_rich Low_complexity Low_complexity 1 22 0 2254 105 0 0 chr1 9237023 9237328 -233427025 - AluSg SINE Alu -5 305 1 633 208 8 0 chr1 9240712 9240832 -233423521 + MIR SINE MIR 56 176 -86 326 264 170 63 chr1 9242601 9242760 -233421593 - L1MC5 LINE L1 -164 7797 7622 429 180 33 107 chr1 9243565 9243607 -233420746 - MER81 DNA DNA 0 114 70 2200 98 10 0 chr1 9243607 9243914 -233420439 - AluSx SINE Alu 0 312 3 429 180 33 107 chr1 9243914 9243993 -233420360 - MER81 DNA DNA -44 70 2 240 149 0 0 chr1 9245482 9245529 -233418824 + (GGA)n Simple_repeat Simple_repeat 2 48 0 282 29 0 0 chr1 9245867 9245902 -233418451 + (CCCCAG)n Simple_repeat Simple_repeat 3 37 0 26 64 0 0 chr1 9252339 9252386 -233411967 + AT_rich Low_complexity Low_complexity 1 47 0 378 270 33 19 chr1 9252510 9252637 -233411716 - L1MC4 LINE L1 -1339 6983 1994 21 57 0 0 chr1 9254302 9254337 -233410016 + GC_rich Low_complexity Low_complexity 1 35 0 265 139 25 63 chr1 9254478 9254557 -233409796 + G-rich Low_complexity Low_complexity 5 80 0 2167 115 0 6 chr1 9254886 9255200 -233409153 + AluSx SINE Alu 1 312 0 1221 57 11 11 chr1 9255225 9255401 -233408952 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 1358 174 70 40 chr1 9255414 9255712 -233408641 + AluJo SINE Alu 1 307 -5 844 177 61 0 chr1 9255712 9255876 -233408477 + AluJb SINE Alu 139 312 0 327 85 0 0 chr1 9255876 9255923 -233408430 + (GA)n Simple_repeat Simple_repeat 1 47 0 477 50 0 0 chr1 9255923 9255983 -233408370 + (GGAA)n Simple_repeat Simple_repeat 4 63 0 935 231 27 60 chr1 9256154 9256452 -233407901 + Charlie4 DNA MER1_type 1 288 -1673 1823 78 0 0 chr1 9256479 9256709 -233407644 + AluSx SINE Alu 1 230 -82 182 296 0 0 chr1 9257282 9257326 -233407027 - MIR SINE MIR 0 262 219 24 60 0 30 chr1 9257326 9257350 -233407003 + AT_rich Low_complexity Low_complexity 1 24 -41 2135 108 0 10 chr1 9257350 9257638 -233406715 + AluSq SINE Alu 1 285 -28 202 74 0 0 chr1 9257638 9257665 -233406688 + (TAAA)n Simple_repeat Simple_repeat 2 108 0 24 60 0 30 chr1 9257665 9257706 -233406647 + AT_rich Low_complexity Low_complexity 24 65 0 2226 94 85 51 chr1 9257716 9258068 -233406285 - THE1B LTR MaLR 0 364 1 1857 159 7 10 chr1 9258327 9258629 -233405724 + AluJb SINE Alu 1 301 -11 2178 110 3 10 chr1 9258962 9259270 -233405083 - AluSx SINE Alu 0 312 7 741 244 119 83 chr1 9259321 9259499 -233404854 - L2 LINE L2 -925 2389 2219 1170 226 78 10 chr1 9259499 9259795 -233404558 + MER33 DNA MER1_type 5 320 -4 741 244 119 83 chr1 9259795 9259828 -233404525 - L2 LINE L2 -1095 2219 2189 2074 138 0 0 chr1 9259828 9260124 -233404229 + AluJb SINE Alu 1 296 -16 741 244 119 83 chr1 9260124 9260383 -233403970 - L2 LINE L2 -1125 2189 1901 217 354 13 13 chr1 9260431 9260510 -233403843 - L2 LINE L2 -52 3220 3142 264 228 76 13 chr1 9260772 9260851 -233403502 - MIR SINE MIR -177 85 2 2052 104 0 31 chr1 9260917 9261233 -233403120 - AluSg SINE Alu 0 307 1 1591 167 10 33 chr1 9261235 9261535 -233402818 - AluJb SINE Alu -19 293 1 275 250 70 86 chr1 9261552 9261680 -233402673 + MIR SINE MIR 18 143 -65 457 328 79 11 chr1 9262576 9262765 -233401588 - MIR SINE MIR -11 251 50 268 259 49 12 chr1 9263018 9263099 -233401254 + MIR SINE MIR 104 187 -75 191 274 44 80 chr1 9263188 9263301 -233401052 + MIR3 SINE MIR 98 206 -2 2065 145 0 0 chr1 9263455 9263766 -233400587 + AluSx SINE Alu 1 311 -1 2246 101 0 0 chr1 9264055 9264353 -233400000 - AluSx SINE Alu -14 298 1 909 269 76 64 chr1 9264547 9265127 -233399226 - L1ME4a LINE L1 -1 6120 5534 201 184 0 0 chr1 9265815 9265853 -233398500 + MIR3 SINE MIR 160 197 -11 340 258 136 104 chr1 9266926 9267213 -233397140 + L2 LINE L2 2832 3127 -145 2461 80 0 0 chr1 9267281 9267592 -233396761 - AluSx SINE Alu -1 311 1 753 276 81 0 chr1 9267612 9267822 -233396531 + MIR SINE MIR 36 262 0 2283 78 3 0 chr1 9268286 9268580 -233395773 + AluSq SINE Alu 1 295 -18 292 254 41 107 chr1 9268683 9268805 -233395548 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 9269071 9269359 -233394994 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 9269397 9269569 -233394784 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 288 240 10 83 chr1 9269569 9269665 -233394688 - L2 LINE L2 0 3272 3184 415 315 0 15 chr1 9269756 9269886 -233394467 + MIR3 SINE MIR 31 158 -50 747 283 50 5 chr1 9270777 9270996 -233393357 + MIR SINE MIR 33 261 -1 218 333 39 0 chr1 9271014 9271092 -233393261 + MIR3 SINE MIR 106 186 -22 622 277 151 5 chr1 9272834 9273040 -233391313 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 9273300 9273439 -233390914 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 9273720 9273911 -233390442 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 9274008 9274182 -233390171 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 9274182 9274219 -233390134 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 9274219 9274508 -233389845 - AluSq SINE Alu -26 287 1 268 305 34 38 chr1 9274723 9274881 -233389472 - MIR SINE MIR -62 146 3 391 313 8 16 chr1 9275420 9275548 -233388805 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 9275539 9275626 -233388727 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 9275669 9275912 -233388441 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 9276661 9276756 -233387597 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 9276696 9276928 -233387425 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 9277009 9277115 -233387238 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 9277704 9277787 -233386566 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 9278316 9278476 -233385877 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 9278510 9278714 -233385639 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 9279390 9279615 -233384738 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 9279814 9279866 -233384487 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 9279982 9280095 -233384258 + L2 LINE L2 3141 3254 -18 2130 106 0 0 chr1 9280126 9280581 -233383772 - AluSx SINE Alu 0 455 1 679 279 90 21 chr1 9281328 9281561 -233382792 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 9281912 9281969 -233382384 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 9282255 9282360 -233381993 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 9282579 9282711 -233381642 - MIR3 SINE MIR -53 155 3 189 0 0 0 chr1 9283332 9283353 -233381000 + (CGG)n Simple_repeat Simple_repeat 3 23 0 39 74 0 0 chr1 9283357 9283438 -233380915 + GC_rich Low_complexity Low_complexity 1 81 0 240 35 0 0 chr1 9286401 9286430 -233377923 + (GGA)n Simple_repeat Simple_repeat 3 31 0 272 257 0 0 chr1 9286452 9286526 -233377827 + A-rich Low_complexity Low_complexity 1 74 0 218 273 15 0 chr1 9288546 9288612 -233375741 + L2 LINE L2 3247 3313 0 2402 42 7 0 chr1 9289365 9289652 -233374701 + AluY SINE Alu 1 289 -22 204 214 0 0 chr1 9291208 9291250 -233373103 + G-rich Low_complexity Low_complexity 3 44 0 231 36 0 0 chr1 9293980 9294008 -233370345 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 206 234 0 62 chr1 9294072 9294136 -233370217 + G-rich Low_complexity Low_complexity 5 64 0 37 0 0 0 chr1 9294480 9294517 -233369836 + AT_rich Low_complexity Low_complexity 1 37 0 200 98 0 24 chr1 9295430 9295471 -233368882 + (CGGGGG)n Simple_repeat Simple_repeat 4 43 0 290 311 66 0 chr1 9296454 9296576 -233367777 + L2 LINE L2 3143 3272 0 253 323 40 0 chr1 9296867 9296991 -233367362 - MER3 DNA MER1_type -70 139 11 357 376 44 6 chr1 9300338 9300519 -233363834 + MIR SINE MIR 61 248 -14 276 30 0 0 chr1 9300895 9300928 -233363425 + (CCCCAG)n Simple_repeat Simple_repeat 4 36 0 212 356 0 0 chr1 9301724 9301842 -233362511 + GA-rich Low_complexity Low_complexity 2 119 0 921 126 0 15 chr1 9302114 9302249 -233362104 - FLAM_C SINE Alu 0 133 1 21 57 0 0 chr1 9304817 9304852 -233359501 + AT_rich Low_complexity Low_complexity 1 35 0 349 237 12 0 chr1 9305485 9305654 -233358699 + (CA)n Simple_repeat Simple_repeat 2 172 0 256 230 22 11 chr1 9305670 9305848 -233358505 + (CA)n Simple_repeat Simple_repeat 1 180 0 509 272 17 0 chr1 9305875 9306048 -233358305 + (CA)n Simple_repeat Simple_repeat 1 176 0 376 256 17 4 chr1 9306114 9306478 -233357875 + (CA)n Simple_repeat Simple_repeat 1 368 0 203 249 11 11 chr1 9306554 9306731 -233357622 + (CA)n Simple_repeat Simple_repeat 2 178 0 223 141 31 0 chr1 9306804 9306868 -233357485 + (CA)n Simple_repeat Simple_repeat 2 67 0 180 0 0 0 chr1 9308081 9308101 -233356252 + (TCTCC)n Simple_repeat Simple_repeat 4 23 0 233 231 0 19 chr1 9308873 9308925 -233355428 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 180 0 0 0 chr1 9308925 9308945 -233355408 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 396 319 139 28 chr1 9309746 9309962 -233354391 + L2 LINE L2 3033 3272 0 250 264 88 48 chr1 9310044 9310169 -233354184 - MIR SINE MIR -119 143 14 210 143 0 0 chr1 9310901 9310936 -233353417 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 314 12 0 chr1 9310970 9311056 -233353297 - L2 LINE L2 -19 3294 3208 201 333 106 24 chr1 9313254 9313377 -233350976 - MIR SINE MIR -81 181 49 211 208 19 0 chr1 9316566 9316619 -233347734 + (CCCG)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr1 9325008 9325033 -233339320 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 2056 121 0 0 chr1 9325035 9325317 -233339036 - AluSx SINE Alu -30 282 1 227 286 218 42 chr1 9325509 9325817 -233338536 + L2 LINE L2 2908 3269 -3 367 177 188 10 chr1 9328693 9328789 -233335564 + MER81 DNA DNA 2 114 0 195 129 0 0 chr1 9333097 9333128 -233331225 + (GGA)n Simple_repeat Simple_repeat 2 32 0 263 308 111 17 chr1 9333961 9334078 -233330275 - L3 LINE CR1 -60 1517 1390 227 100 0 25 chr1 9335179 9335219 -233329134 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 234 0 0 0 chr1 9337614 9337640 -233326713 + (A)n Simple_repeat Simple_repeat 1 26 0 24 77 0 0 chr1 9338116 9338168 -233326185 + GC_rich Low_complexity Low_complexity 1 52 0 28 99 0 0 chr1 9338267 9338358 -233325995 + GC_rich Low_complexity Low_complexity 1 91 0 31 26 0 0 chr1 9338733 9338771 -233325582 + GC_rich Low_complexity Low_complexity 1 38 0 672 119 0 0 chr1 9343366 9343484 -233320869 + (GA)n Simple_repeat Simple_repeat 2 119 0 333 0 0 0 chr1 9343484 9343521 -233320832 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 308 138 71 chr1 9344007 9344127 -233320226 + MIR SINE MIR 22 133 -129 1259 159 9 0 chr1 9344127 9344341 -233320012 + L1MB7 LINE L1 5969 6184 0 305 308 138 71 chr1 9344341 9344444 -233319909 + MIR SINE MIR 133 260 -2 294 73 0 0 chr1 9346349 9346390 -233317963 + (GA)n Simple_repeat Simple_repeat 1 41 0 204 291 182 27 chr1 9346888 9346998 -233317355 - MIR SINE MIR -79 183 57 871 198 0 55 chr1 9347118 9347320 -233317033 - MER58A DNA MER1_type 0 224 34 182 320 16 82 chr1 9351461 9351583 -233312770 - MIR3 SINE MIR -47 161 48 269 329 0 0 chr1 9352162 9352241 -233312112 + GA-rich Low_complexity Low_complexity 4 82 0 235 254 8 49 chr1 9352335 9352457 -233311896 + G-rich Low_complexity Low_complexity 2 118 0 342 156 0 0 chr1 9352994 9353058 -233311295 + GA-rich Low_complexity Low_complexity 2 65 0 213 314 71 0 chr1 9354175 9354245 -233310108 - L2 LINE L2 -10 3262 3188 2172 113 13 0 chr1 9354256 9354556 -233309797 + AluSx SINE Alu 1 304 -8 382 283 32 34 chr1 9354571 9354707 -233309646 + MIR SINE MIR 37 170 -61 285 254 127 36 chr1 9354710 9354820 -233309533 - L2 LINE L2 -5 3308 3189 260 246 0 0 chr1 9354841 9354898 -233309455 + MIR SINE MIR 206 262 0 2174 187 29 55 chr1 9354940 9355467 -233308886 + L1MB5 LINE L1 5626 6166 -17 2141 117 0 0 chr1 9355467 9355757 -233308596 + AluSq SINE Alu 1 290 -23 285 29 0 0 chr1 9355762 9355796 -233308557 + (TAAAA)n Simple_repeat Simple_repeat 3 36 0 2174 187 29 55 chr1 9355796 9355847 -233308506 + L1MB5 LINE L1 6170 6183 0 192 97 0 0 chr1 9356694 9356725 -233307628 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 2226 102 3 7 chr1 9357429 9357734 -233306619 + AluSx SINE Alu 2 305 -7 226 250 75 50 chr1 9357751 9357871 -233306482 - MIR SINE MIR -133 129 7 443 215 0 43 chr1 9358891 9359077 -233305276 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 276 275 0 33 chr1 9359093 9359275 -233305078 + (CACCC)n Simple_repeat Simple_repeat 1 176 0 424 235 0 39 chr1 9359354 9359719 -233304634 + (CACCC)n Simple_repeat Simple_repeat 1 350 0 195 42 0 0 chr1 9360785 9360809 -233303544 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 282 272 194 7 chr1 9361429 9361576 -233302777 - MIR SINE MIR -59 149 13 24 0 0 0 chr1 9361756 9361780 -233302573 + AT_rich Low_complexity Low_complexity 1 24 0 328 103 0 59 chr1 9362272 9362340 -233302013 - AluSq SINE Alu -1 301 238 1630 125 0 20 chr1 9362373 9362621 -233301732 - AluSq SINE Alu -70 243 1 448 374 27 0 chr1 9363479 9363666 -233300687 + MIR SINE MIR 40 231 -31 262 248 208 0 chr1 9369404 9369505 -233294848 - MIR SINE MIR 0 262 141 231 146 0 0 chr1 9369507 9369548 -233294805 + (CTA)n Simple_repeat Simple_repeat 3 43 0 322 312 39 19 chr1 9369560 9369714 -233294639 - MIR SINE MIR -2 260 104 33 0 0 0 chr1 9371990 9372023 -233292330 + AT_rich Low_complexity Low_complexity 1 33 0 194 133 0 44 chr1 9372490 9372535 -233291818 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 417 301 102 6 chr1 9372973 9373211 -233291142 + Charlie1a DNA MER1_type 2 268 -1187 2095 104 3 0 chr1 9373211 9373498 -233290855 - AluSx SINE Alu -4 308 21 988 129 0 0 chr1 9373507 9373669 -233290684 - AluSx SINE Alu 0 307 146 563 44 0 0 chr1 9373669 9373737 -233290616 - AluSx SINE Alu -245 68 1 3523 194 72 81 chr1 9373742 9374229 -233290124 + Charlie1a DNA MER1_type 264 754 -2007 2157 114 0 0 chr1 9374229 9374519 -233289834 + AluSg SINE Alu 1 290 -20 3523 194 72 81 chr1 9374519 9374704 -233289649 + Charlie1a DNA MER1_type 754 939 -1822 1870 163 3 6 chr1 9374704 9375017 -233289336 + AluJb SINE Alu 1 312 0 3523 194 72 81 chr1 9375017 9375446 -233288907 + Charlie1a DNA MER1_type 939 1357 -1404 2187 107 13 0 chr1 9375446 9375745 -233288608 + AluSx SINE Alu 1 303 -9 3523 194 72 81 chr1 9375745 9375844 -233288509 + Charlie1a DNA MER1_type 1357 1455 0 402 390 26 40 chr1 9376847 9377119 -233287234 - L2 LINE L2 -5 3267 3000 621 280 109 25 chr1 9377130 9377369 -233286984 + MIR SINE MIR 2 260 -2 228 135 0 0 chr1 9378060 9378097 -233286256 + (GA)n Simple_repeat Simple_repeat 2 38 0 251 325 42 17 chr1 9379819 9379939 -233284414 - MER5A DNA MER1_type -66 123 1 268 271 125 0 chr1 9379944 9380040 -233284313 - MIR SINE MIR -106 156 49 236 358 65 16 chr1 9380084 9380207 -233284146 - L2 LINE L2 -37 3235 3107 495 330 112 32 chr1 9381364 9381649 -233282704 - L2 LINE L2 -1 3312 3005 234 0 0 0 chr1 9382322 9382348 -233282005 + (T)n Simple_repeat Simple_repeat 1 26 0 426 342 38 8 chr1 9383473 9383669 -233280684 - MIR SINE MIR -35 227 25 189 279 44 15 chr1 9383766 9383834 -233280519 + MIR3 SINE MIR 114 183 -25 1870 152 0 29 chr1 9384074 9384390 -233279963 + AluJo SINE Alu 5 311 -1 1858 122 50 0 chr1 9384408 9384686 -233279667 - AluSx SINE Alu -20 292 1 206 121 0 0 chr1 9385184 9385217 -233279136 + (TA)n Simple_repeat Simple_repeat 1 33 0 2266 106 0 3 chr1 9386105 9386408 -233277945 + AluSx SINE Alu 1 302 -10 192 77 0 0 chr1 9387254 9387280 -233277073 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 982 204 11 0 chr1 9388891 9389067 -233275286 + MER45A DNA AcHobo 1 178 0 254 348 30 80 chr1 9389072 9389273 -233275080 + MIR SINE MIR 28 218 -44 180 286 48 16 chr1 9389445 9389508 -233274845 - MIR SINE MIR -117 145 81 2454 47 0 7 chr1 9391221 9391521 -233272832 - AluY SINE Alu -13 298 1 266 314 215 26 chr1 9391817 9392008 -233272345 - MIR SINE MIR -15 247 21 2217 92 0 7 chr1 9392657 9392950 -233271403 - AluSc SINE Alu -18 291 1 1415 157 79 59 chr1 9393666 9393971 -233270382 - AluJo SINE Alu -1 311 1 299 283 29 92 chr1 9393972 9394021 -233270332 + MIR SINE MIR 101 152 -110 2161 100 3 28 chr1 9394021 9394340 -233270013 + AluSx SINE Alu 1 311 -1 299 283 29 92 chr1 9394340 9394463 -233269890 + MIR SINE MIR 152 262 0 242 54 0 27 chr1 9394472 9394509 -233269844 + (TTA)n Simple_repeat Simple_repeat 2 37 0 896 164 10 70 chr1 9396095 9396157 -233268196 - MER53 DNA DNA 0 189 125 2127 101 0 3 chr1 9396157 9396467 -233267886 + AluSq SINE Alu 1 309 0 896 164 10 70 chr1 9396467 9396604 -233267749 - MER53 DNA DNA -64 125 1 762 252 118 50 chr1 9397257 9397818 -233266535 + L2 LINE L2 2710 3309 -4 715 310 139 20 chr1 9400672 9400909 -233263444 + L2 LINE L2 2439 2647 -666 2276 114 0 0 chr1 9400909 9401215 -233263138 + AluSx SINE Alu 1 306 -6 715 310 139 20 chr1 9401215 9401694 -233262659 + L2 LINE L2 2647 3243 -70 2392 100 0 0 chr1 9401724 9402035 -233262318 - AluSx SINE Alu -1 311 1 380 325 140 13 chr1 9403772 9403929 -233260424 - MIR3 SINE MIR -11 197 21 290 322 89 20 chr1 9406697 9406843 -233257510 + MIR3 SINE MIR 28 183 -25 381 361 30 0 chr1 9407028 9407161 -233257192 + L2 LINE L2 3106 3242 -30 2230 110 0 0 chr1 9407266 9407566 -233256787 - AluSx SINE Alu -12 300 1 193 343 14 14 chr1 9407714 9407784 -233256569 - L2 LINE L2 -9 3263 3194 414 364 66 0 chr1 9407844 9408042 -233256311 - MIR SINE MIR -24 238 28 216 0 0 0 chr1 9409608 9409632 -233254721 + (CA)n Simple_repeat Simple_repeat 1 24 0 957 247 18 5 chr1 9409659 9409878 -233254475 + MIR SINE MIR 2 223 -39 191 297 34 109 chr1 9410132 9410307 -233254046 - MIR SINE MIR -30 232 71 2062 116 0 0 chr1 9411603 9411921 -233252432 - AluSx SINE Alu 0 318 1 2252 96 3 0 chr1 9412262 9412564 -233251789 + AluSx SINE Alu 1 303 -9 613 191 17 0 chr1 9412686 9412801 -233251552 + MER3 DNA MER1_type 52 168 -41 2205 93 3 0 chr1 9412930 9413220 -233251133 - AluSx SINE Alu -21 291 1 519 302 61 14 chr1 9413222 9413434 -233250919 - MIR SINE MIR -6 256 35 1802 186 0 0 chr1 9413476 9413788 -233250565 - AluJb SINE Alu 0 312 1 22 0 0 0 chr1 9414717 9414739 -233249614 + AT_rich Low_complexity Low_complexity 1 22 0 348 24 0 0 chr1 9415061 9415102 -233249251 + (TCC)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr1 9416429 9416454 -233247899 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 414 249 13 24 chr1 9420456 9420616 -233243737 + MIR SINE MIR 48 203 -59 414 260 6 17 chr1 9420995 9421176 -233243177 + (CA)n Simple_repeat Simple_repeat 2 180 0 267 294 5 27 chr1 9421295 9421479 -233242874 + (CA)n Simple_repeat Simple_repeat 1 180 0 279 305 6 6 chr1 9421704 9421878 -233242475 + (CA)n Simple_repeat Simple_repeat 1 174 0 198 0 0 0 chr1 9422683 9422705 -233241648 + (T)n Simple_repeat Simple_repeat 1 22 0 375 298 60 36 chr1 9423922 9424090 -233240263 + L1ME4a LINE L1 5893 6064 -57 409 329 119 9 chr1 9424125 9424344 -233240009 + MIR SINE MIR 9 251 -11 475 303 86 0 chr1 9425152 9425327 -233239026 - MIR SINE MIR -26 236 47 357 24 0 0 chr1 9426650 9426692 -233237661 + (TG)n Simple_repeat Simple_repeat 2 43 0 2306 89 3 0 chr1 9426994 9427297 -233237056 + AluSx SINE Alu 1 304 -8 214 327 114 30 chr1 9427335 9427537 -233236816 - MIR SINE MIR -12 250 32 619 246 149 0 chr1 9427737 9427912 -233236441 + MER3 DNA MER1_type 9 209 0 2020 118 0 7 chr1 9427958 9428269 -233236084 - AluSx SINE Alu 0 309 1 278 148 0 19 chr1 9428421 9428475 -233235878 + (TTTC)n Simple_repeat Simple_repeat 1 53 0 730 114 11 45 chr1 9428475 9428651 -233235702 + (TTCC)n Simple_repeat Simple_repeat 2 171 0 332 181 19 29 chr1 9428625 9428730 -233235623 + CT-rich Low_complexity Low_complexity 3 106 0 * 209 257 176 42 chr1 9429295 9429463 -233234890 - MIR SINE MIR -54 154 3 478 250 91 8 chr1 9429963 9430095 -233234258 - MIR SINE MIR -37 225 83 441 276 26 2 chr1 9430482 9430664 -233233689 - MIR SINE MIR -50 212 28 192 214 0 0 chr1 9431036 9431092 -233233261 + (CA)n Simple_repeat Simple_repeat 2 57 0 351 96 0 0 chr1 9432928 9432980 -233231373 + (TC)n Simple_repeat Simple_repeat 1 52 0 290 87 22 0 chr1 9435127 9435173 -233229180 + (GA)n Simple_repeat Simple_repeat 2 48 0 180 77 0 0 chr1 9435718 9435744 -233228609 + (C)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr1 9436260 9436282 -233228071 + AT_rich Low_complexity Low_complexity 1 22 0 426 108 0 0 chr1 9437538 9437603 -233226750 + (TG)n Simple_repeat Simple_repeat 1 65 0 213 229 49 16 chr1 9438285 9438407 -233225946 + (CCCG)n Simple_repeat Simple_repeat 2 127 0 240 100 0 0 chr1 9439793 9439833 -233224520 + (CTCG)n Simple_repeat Simple_repeat 2 41 0 205 225 36 90 chr1 9440632 9440743 -233223610 - L2 LINE L2 -105 3208 3104 924 121 8 0 chr1 9440764 9440896 -233223457 + FLAM_C SINE Alu 1 133 0 298 257 14 0 chr1 9441994 9442068 -233222285 - MIR3 SINE MIR -37 171 97 732 246 62 7 chr1 9442138 9442353 -233222000 + MIR SINE MIR 36 261 -1 616 279 149 32 chr1 9443127 9443599 -233220754 + L2 LINE L2 2760 3288 -25 247 337 71 0 chr1 9444028 9444126 -233220227 + L2 LINE L2 3167 3271 -1 548 241 68 19 chr1 9444244 9444406 -233219947 - MIR SINE MIR -3 259 90 2008 151 0 0 chr1 9444658 9444969 -233219384 + AluSx SINE Alu 1 311 -1 2246 94 0 0 chr1 9445258 9445556 -233218797 - AluSx SINE Alu -14 298 1 993 277 92 59 chr1 9445750 9446381 -233217972 - L1ME4a LINE L1 -1 6120 5469 199 184 0 0 chr1 9447018 9447056 -233217297 + MIR3 SINE MIR 160 197 -11 317 254 136 104 chr1 9448129 9448416 -233215937 + L2 LINE L2 2832 3127 -145 2436 80 0 0 chr1 9448484 9448795 -233215558 - AluSx SINE Alu -1 311 1 733 252 95 14 chr1 9448815 9449025 -233215328 + MIR SINE MIR 36 262 0 2258 78 3 0 chr1 9449489 9449783 -233214570 + AluSq SINE Alu 1 295 -18 281 229 41 107 chr1 9449886 9450008 -233214345 - MIR SINE MIR -75 133 20 611 232 7 0 chr1 9450274 9450562 -233213791 + (TCCA)n Simple_repeat Simple_repeat 1 290 0 810 174 0 0 chr1 9450600 9450772 -233213581 + (TCCA)n Simple_repeat Simple_repeat 2 173 0 282 240 10 83 chr1 9450772 9450868 -233213485 - L2 LINE L2 0 3272 3184 402 315 0 15 chr1 9450959 9451089 -233213264 + MIR3 SINE MIR 31 158 -50 713 283 50 5 chr1 9451981 9452200 -233212153 + MIR SINE MIR 33 261 -1 201 333 39 0 chr1 9452218 9452296 -233212057 + MIR3 SINE MIR 106 186 -22 587 253 165 5 chr1 9454036 9454242 -233210111 + MIR SINE MIR 27 262 0 236 410 14 14 chr1 9454502 9454641 -233209712 + L2 LINE L2 3134 3272 0 1460 89 0 11 chr1 9454921 9455112 -233209241 + AluSx SINE Alu 1 189 -123 502 253 195 0 chr1 9455209 9455383 -233208970 + MIR SINE MIR 48 255 -7 194 81 27 0 chr1 9455383 9455420 -233208933 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 2168 97 0 7 chr1 9455420 9455709 -233208644 - AluSq SINE Alu -26 287 1 295 304 34 38 chr1 9455924 9456082 -233208271 - MIR3 SINE MIR -62 146 3 391 313 8 16 chr1 9456621 9456749 -233207604 - MIR SINE MIR -45 217 91 221 345 0 46 chr1 9456740 9456827 -233207526 + L2 LINE L2 3189 3271 -1 * 499 346 33 33 chr1 9456870 9457113 -233207240 - MIR SINE MIR -15 247 5 202 263 63 42 chr1 9457862 9457957 -233206396 - MIR3 SINE MIR -104 104 8 * 772 259 78 9 chr1 9457897 9458129 -233206224 + MIR SINE MIR 11 258 -4 428 255 19 0 chr1 9458210 9458316 -233206037 - MER81 DNA DNA -1 113 6 234 313 108 0 chr1 9458905 9458988 -233205365 - MIR SINE MIR -60 202 111 295 300 194 50 chr1 9459517 9459677 -233204676 - MIR SINE MIR -44 218 36 484 289 69 39 chr1 9459711 9459915 -233204438 + MIR SINE MIR 18 227 -35 180 347 124 4 chr1 9460591 9460816 -233203537 + L2 LINE L2 2723 2974 -340 195 135 19 115 chr1 9461015 9461067 -233203286 - L2 LINE L2 0 3313 3267 195 319 44 35 chr1 9461183 9461296 -233203057 + L2 LINE L2 3141 3254 -18 657 96 0 0 chr1 9461328 9461422 -233202931 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2273 115 0 0 chr1 9461422 9461734 -233202619 - AluSx SINE Alu 0 312 1 679 279 90 21 chr1 9462481 9462714 -233201639 + MIR SINE MIR 2 250 -12 215 228 0 35 chr1 9463065 9463122 -233201231 + G-rich Low_complexity Low_complexity 2 56 0 195 314 57 29 chr1 9463408 9463513 -233200840 + MIR SINE MIR 85 192 -70 373 220 189 30 chr1 9463732 9463864 -233200489 - MIR3 SINE MIR -53 155 3 1945 152 7 3 chr1 9464257 9464566 -233199787 - AluSx SINE Alu -2 310 1 259 349 106 8 chr1 9464622 9464754 -233199599 - MIR SINE MIR -62 200 56 316 358 25 31 chr1 9464786 9464948 -233199405 + L2 LINE L2 2894 3054 -218 186 43 0 0 chr1 9464956 9464979 -233199374 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 214 9 0 chr1 9464980 9465092 -233199261 - L2 LINE L2 -14 3299 3187 2426 87 0 0 chr1 9465226 9465538 -233198815 - AluSx SINE Alu 0 312 1 1926 135 10 7 chr1 9465541 9465845 -233198508 - AluJb SINE Alu -7 305 1 579 269 16 42 chr1 9466093 9466286 -233198067 + MIR3 SINE MIR 15 202 -6 388 269 134 47 chr1 9466786 9466935 -233197418 - MIR SINE MIR 0 262 101 1919 140 24 3 chr1 9467000 9467292 -233197061 + AluSx SINE Alu 1 298 -14 318 354 0 0 chr1 9468030 9468126 -233196227 + L1M4 LINE L1 3074 3169 -2977 354 291 28 31 chr1 9468648 9468841 -233195512 + MIR SINE MIR 34 226 -36 611 269 76 6 chr1 9468848 9469019 -233195334 - MIR SINE MIR -1 261 79 2189 107 0 0 chr1 9469630 9469928 -233194425 + AluSx SINE Alu 1 298 -14 37 0 0 21 chr1 9469944 9469957 -233194396 + AT_rich Low_complexity Low_complexity 1 13 -34 2187 103 0 3 chr1 9469957 9470248 -233194105 - AluSg SINE Alu -20 290 1 37 0 0 21 chr1 9470248 9470282 -233194071 + AT_rich Low_complexity Low_complexity 13 47 0 516 278 14 28 chr1 9470451 9470595 -233193758 - MIR SINE MIR -113 149 8 255 236 0 0 chr1 9470712 9470767 -233193586 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 356 292 102 7 chr1 9470769 9470906 -233193447 - MIR SINE MIR -75 187 38 225 0 0 0 chr1 9472356 9472381 -233191972 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1624 158 0 45 chr1 9472440 9472750 -233191603 + AluJb SINE Alu 1 296 -16 356 365 105 30 chr1 9472992 9473192 -233191161 + L1MC4a LINE L1 5721 5935 -1873 533 281 95 50 chr1 9474111 9474353 -233190000 + MIR SINE MIR 8 260 -2 296 242 0 0 chr1 9474862 9474928 -233189425 - MIR SINE MIR -138 124 59 2187 125 0 0 chr1 9475463 9475775 -233188578 - AluSx SINE Alu 0 312 1 212 200 13 53 chr1 9476564 9476639 -233187714 + L2 LINE L2 2967 3038 -234 2011 155 0 0 chr1 9476786 9477090 -233187263 + AluJb SINE Alu 1 304 -8 400 274 132 57 chr1 9477090 9477302 -233187051 - L2 LINE L2 -1 3312 3085 1032 151 0 0 chr1 9477397 9477576 -233186777 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 1089 136 0 0 chr1 9477577 9477754 -233186599 + (CTCA)n Simple_repeat Simple_repeat 3 179 0 285 98 0 0 chr1 9477755 9477796 -233186557 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 486 289 111 0 chr1 9478888 9479068 -233185285 - MIR SINE MIR 0 262 63 215 167 0 0 chr1 9479729 9479765 -233184588 + MIR SINE MIR 110 145 -63 479 297 180 28 chr1 9479767 9479917 -233184436 - L2 LINE L2 -5 3308 3182 2150 92 0 7 chr1 9479917 9480224 -233184129 + AluSx SINE Alu 1 305 0 479 297 180 28 chr1 9480224 9480395 -233183958 - L2 LINE L2 -131 3182 2937 255 170 21 0 chr1 9480718 9480765 -233183588 - MIR3 SINE MIR -52 156 109 949 188 0 0 chr1 9481075 9481261 -233183092 + FRAM SINE Alu 1 176 0 550 244 6 70 chr1 9481329 9481501 -233182852 + MIR SINE MIR 26 186 -76 343 336 52 0 chr1 9481605 9481721 -233182632 - MIR SINE MIR -124 138 17 222 336 8 0 chr1 9482566 9482688 -233181665 + (TG)n Simple_repeat Simple_repeat 1 123 0 2334 90 0 10 chr1 9484018 9484329 -233180024 + AluY SINE Alu 1 308 -3 463 247 11 144 chr1 9485081 9485352 -233179001 - MIR SINE MIR -9 253 19 1377 271 129 0 chr1 9485514 9485540 -233178813 + L2 LINE L2 2357 2378 -936 2233 95 3 0 chr1 9485540 9485836 -233178517 - AluSx SINE Alu -15 297 1 1377 271 129 0 chr1 9485836 9486322 -233178031 + L2 LINE L2 2378 2935 -379 317 280 32 96 chr1 9486449 9486617 -233177736 + L2 LINE L2 2945 3094 -219 1668 190 0 14 chr1 9486617 9486945 -233177408 - AluJo SINE Alu 0 326 3 317 280 32 96 chr1 9486945 9487025 -233177328 + L2 LINE L2 3094 3178 -135 1842 216 70 19 chr1 9487059 9487684 -233176669 - L1MEc LINE L1 -4948 1448 792 1697 188 3 0 chr1 9487701 9487988 -233176365 - AluJb SINE Alu -24 288 1 727 152 7 0 chr1 9487988 9488126 -233176227 - L1MC3 LINE L1 -6 7779 7641 621 132 0 99 chr1 9488126 9488247 -233176106 + FRAM SINE Alu 65 173 -3 643 218 58 0 chr1 9488253 9488409 -233175944 - L1MD3 LINE L1 -146 7849 7685 1085 148 94 20 chr1 9488409 9488612 -233175741 - AluJo SINE Alu -16 296 79 3427 215 89 30 chr1 9488612 9489234 -233175119 - L1MC3 LINE L1 -308 7477 6893 2028 152 7 0 chr1 9489234 9489544 -233174809 - AluJb SINE Alu 0 312 1 1450 167 101 17 chr1 9489550 9489838 -233174515 - AluJb SINE Alu 0 312 1 3427 215 89 30 chr1 9489838 9490218 -233174135 - L1MC3 LINE L1 -896 6889 6408 924 251 8 4 chr1 9490222 9490461 -233173892 - L1MEc LINE L1 -5608 788 549 771 245 60 78 chr1 9490469 9490678 -233173675 - L1MEc LINE L1 -5984 412 201 1922 95 71 10 chr1 9490678 9490972 -233173381 - AluJb SINE Alu 0 312 1 771 245 60 78 chr1 9490972 9491072 -233173281 - L1MEc LINE L1 -6195 201 109 752 208 0 0 chr1 9491072 9491197 -233173156 - FLAM_A SINE Alu -8 125 1 771 245 60 78 chr1 9491197 9491270 -233173083 - L1MEc LINE L1 -6287 109 36 308 292 34 11 chr1 9491270 9491359 -233172994 - L2 LINE L2 -43 3270 3180 1995 125 10 7 chr1 9491415 9491710 -233172643 + AluSx SINE Alu 1 296 -16 260 125 21 0 chr1 9491710 9491758 -233172595 - Cheshire DNA MER1_type -29 2391 2343 * 1648 198 55 0 chr1 9491755 9492083 -233172270 - Cheshire DNA MER1_type -2074 346 1 2046 150 0 3 chr1 9492130 9492443 -233171910 + AluSx SINE Alu 1 312 0 256 381 121 0 chr1 9492443 9492616 -233171737 - L2 LINE L2 -136 3177 2984 205 281 207 0 chr1 9492652 9492734 -233171619 + L2 LINE L2 3133 3231 -41 327 283 29 9 chr1 9492866 9493003 -233171350 + MIR SINE MIR 11 146 -62 339 297 94 90 chr1 9493630 9493886 -233170467 + L2 LINE L2 3015 3271 -1 248 288 34 103 chr1 9493896 9494042 -233170311 - MIR3 SINE MIR -38 170 35 187 217 0 0 chr1 9494050 9494097 -233170256 + MIR SINE MIR 102 148 -60 1985 118 7 0 chr1 9494312 9494591 -233169762 - AluSx SINE Alu -16 296 16 249 340 64 39 chr1 9495591 9495794 -233168559 - L2 LINE L2 -113 3159 2952 274 278 0 10 chr1 9496342 9496439 -233167914 + (CACCAT)n Simple_repeat Simple_repeat 6 101 0 309 200 0 59 chr1 9496459 9496594 -233167759 + (CACCAT)n Simple_repeat Simple_repeat 1 127 0 362 240 0 7 chr1 9496622 9496768 -233167585 + (CCA)n Simple_repeat Simple_repeat 1 145 0 594 236 0 21 chr1 9496816 9497103 -233167250 + (CACCAT)n Simple_repeat Simple_repeat 1 281 0 608 240 7 10 chr1 9497154 9497452 -233166901 + (CACCAT)n Simple_repeat Simple_repeat 1 297 0 2382 101 93 21 chr1 9497496 9497761 -233166592 + MER83 LTR ERV1 1 308 -140 2039 122 54 35 chr1 9497761 9497832 -233166521 - THE1C LTR MaLR 0 375 307 2296 107 0 0 chr1 9497832 9498141 -233166212 + AluY SINE Alu 2 310 -1 2039 122 54 35 chr1 9498141 9498437 -233165916 - THE1C LTR MaLR -68 307 1 2382 101 93 21 chr1 9498437 9498589 -233165764 + MER83 LTR ERV1 308 448 0 306 246 0 26 chr1 9498592 9498706 -233165647 + (CAT)n Simple_repeat Simple_repeat 2 112 0 617 296 182 0 chr1 9498864 9499232 -233165121 + L2 LINE L2 2838 3272 0 201 141 16 31 chr1 9500938 9501002 -233163351 + CT-rich Low_complexity Low_complexity 1 63 0 335 261 0 18 chr1 9501027 9501138 -233163215 + CT-rich Low_complexity Low_complexity 1 109 0 283 285 227 8 chr1 9502041 9502283 -233162070 - L2 LINE L2 0 3313 3019 502 259 16 86 chr1 9502405 9502528 -233161825 - MIR SINE MIR -6 256 126 2257 117 0 0 chr1 9502528 9502835 -233161518 + AluSx SINE Alu 3 309 -3 1615 181 10 10 chr1 9502840 9503138 -233161215 + AluJb SINE Alu 1 298 -14 502 259 16 86 chr1 9503138 9503283 -233161070 - MIR SINE MIR -140 122 5 301 374 94 24 chr1 9504073 9504667 -233159686 - L2 LINE L2 -337 2977 2342 309 254 79 35 chr1 9504943 9505057 -233159296 + MIR3 SINE MIR 78 196 -12 469 272 7 22 chr1 9506029 9506165 -233158188 + MIR SINE MIR 84 217 -45 207 100 0 0 chr1 9506703 9506733 -233157620 + (TG)n Simple_repeat Simple_repeat 1 30 0 308 153 0 14 chr1 9507656 9507728 -233156625 + (TG)n Simple_repeat Simple_repeat 2 72 0 256 272 0 43 chr1 9507990 9508082 -233156271 + GA-rich Low_complexity Low_complexity 2 89 0 291 140 0 0 chr1 9508687 9508737 -233155616 + (TC)n Simple_repeat Simple_repeat 2 51 0 450 0 0 0 chr1 9509184 9509234 -233155119 + (CAGA)n Simple_repeat Simple_repeat 3 52 0 226 83 0 62 chr1 9509311 9509359 -233154994 + (GGAGA)n Simple_repeat Simple_repeat 1 45 0 240 137 6 93 chr1 9509414 9509575 -233154778 + (GGAGA)n Simple_repeat Simple_repeat 1 147 0 201 238 16 0 chr1 9509710 9509773 -233154580 + C-rich Low_complexity Low_complexity 4 67 0 184 390 48 19 chr1 9510159 9510369 -233153984 + L2 LINE L2 3012 3227 -45 29 78 0 0 chr1 9510615 9510679 -233153674 + GC_rich Low_complexity Low_complexity 1 64 0 35 24 0 0 chr1 9510709 9510751 -233153602 + GC_rich Low_complexity Low_complexity 1 42 0 313 289 11 5 chr1 9511775 9511896 -233152457 - MIR SINE MIR -62 146 34 234 261 31 0 chr1 9512017 9512082 -233152271 - Charlie8 DNA MER1_type -3 2414 2348 321 288 76 8 chr1 9512207 9512325 -233152028 + MIR SINE MIR 46 171 -91 326 258 136 50 chr1 9512436 9512657 -233151696 - LTR16C LTR ERVL -59 432 193 252 250 53 40 chr1 9512989 9513065 -233151288 - L2 LINE L2 -188 3084 3008 262 333 40 32 chr1 9513387 9513513 -233150840 - MER5A DNA MER1_type -35 154 28 390 204 0 0 chr1 9514009 9514117 -233150236 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 388 300 36 29 chr1 9514117 9514257 -233150096 - L2 LINE L2 0 3313 3173 2181 91 0 3 chr1 9514643 9514953 -233149400 - AluY SINE Alu 0 309 1 2160 121 0 9 chr1 9514965 9515280 -233149073 - AluSx SINE Alu 0 312 1 313 320 146 15 chr1 9515418 9515624 -233148729 - L2 LINE L2 -205 3067 2835 729 258 57 39 chr1 9516053 9516287 -233148066 - MIR SINE MIR -17 245 11 626 273 12 0 chr1 9516975 9517140 -233147213 - MIR3 SINE MIR 0 208 42 2112 131 0 0 chr1 9517165 9517470 -233146883 + AluSx SINE Alu 1 305 -7 282 299 58 0 chr1 9517641 9517728 -233146625 + MIR SINE MIR 95 186 -76 180 213 0 43 chr1 9518002 9518049 -233146304 - MIR SINE MIR -69 139 95 192 288 62 12 chr1 9518143 9518223 -233146130 + MIR SINE MIR 19 102 -160 1204 128 35 35 chr1 9519011 9519205 -233145148 - AluJb SINE Alu 0 316 120 2245 103 3 0 chr1 9519205 9519505 -233144848 + AluSp SINE Alu 1 301 -12 1204 128 35 35 chr1 9519505 9519541 -233144812 - AluJb SINE Alu -195 121 86 2534 184 37 29 chr1 9519560 9520050 -233144303 - L1MB5 LINE L1 0 6174 5681 2166 107 0 3 chr1 9520265 9520563 -233143790 - AluSx SINE Alu -15 297 1 191 274 44 80 chr1 9520717 9520830 -233143523 - MIR3 SINE MIR -2 206 98 268 259 49 12 chr1 9520919 9521000 -233143353 - MIR SINE MIR -75 187 104 457 328 79 11 chr1 9521253 9521442 -233142911 + MIR SINE MIR 50 251 -11 281 252 71 79 chr1 9522337 9522464 -233141889 - MIR SINE MIR -65 143 18 1591 167 10 33 chr1 9522481 9522781 -233141572 + AluJb SINE Alu 1 293 -19 2053 104 0 31 chr1 9522783 9523099 -233141254 + AluSg SINE Alu 1 307 0 264 228 76 13 chr1 9523165 9523244 -233141109 + MIR SINE MIR 2 85 -177 217 354 13 13 chr1 9523506 9523585 -233140768 + L2 LINE L2 3142 3220 -52 1273 227 181 83 chr1 9523633 9523892 -233140461 + L2 LINE L2 1901 2133 -1181 2074 138 0 0 chr1 9523892 9524188 -233140165 - AluJb SINE Alu -16 296 1 1273 227 181 83 chr1 9524188 9524221 -233140132 + L2 LINE L2 2133 2161 -1153 1170 226 78 10 chr1 9524221 9524517 -233139836 - MER33 DNA MER1_type -4 320 5 1273 227 181 83 chr1 9524517 9524740 -233139613 + L2 LINE L2 2161 2361 -953 1999 128 0 0 chr1 9524740 9525042 -233139311 + AluSq SINE Alu 1 302 0 1273 227 181 83 chr1 9525042 9525255 -233139098 + L2 LINE L2 2361 2552 -762 1459 162 23 53 chr1 9525255 9525557 -233138796 + AluSx SINE Alu 6 298 -14 1273 227 181 83 chr1 9525557 9525638 -233138715 + L2 LINE L2 2552 2793 -521 342 253 54 133 chr1 9525665 9525905 -233138448 + L2 LINE L2 2912 3189 -124 2226 110 0 0 chr1 9525905 9526213 -233138140 - AluSc SINE Alu 0 309 2 342 253 54 133 chr1 9526213 9526328 -233138025 + L2 LINE L2 3189 3312 -1 705 307 173 18 chr1 9526332 9526573 -233137780 - L1M4 LINE L1 -1195 4951 4749 1750 128 55 10 chr1 9526573 9526863 -233137490 - AluSq SINE Alu -10 303 1 1832 145 20 20 chr1 9526865 9527038 -233137315 - AluJo SINE Alu -8 304 129 198 0 0 0 chr1 9527038 9527060 -233137293 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1832 145 20 20 chr1 9527060 9527190 -233137163 - AluJo SINE Alu -182 130 1 705 307 173 18 chr1 9527190 9527339 -233137014 - L1M4 LINE L1 -1397 4749 4497 788 223 83 0 chr1 9527399 9527556 -233136797 - FAM SINE Alu -5 170 1 21 71 0 0 chr1 9527566 9527608 -233136745 + AT_rich Low_complexity Low_complexity 1 42 0 734 313 40 48 chr1 9527789 9528050 -233136303 + L1ME4a LINE L1 5320 5582 -539 2205 119 3 0 chr1 9528050 9528361 -233135992 - AluSx SINE Alu 0 312 1 1956 158 7 0 chr1 9528364 9528667 -233135686 - AluJb SINE Alu -7 305 1 734 313 40 48 chr1 9528667 9529020 -233135333 + L1ME4a LINE L1 5584 5933 -188 2411 77 0 10 chr1 9529027 9529340 -233135013 + AluY SINE Alu 2 311 0 3681 183 21 37 chr1 9529341 9529714 -233134639 + L1MB8 LINE L1 5296 5673 -505 2176 120 3 0 chr1 9529714 9530015 -233134338 + AluSx SINE Alu 1 302 -10 3681 183 21 37 chr1 9530015 9530465 -233133888 + L1MB8 LINE L1 5673 6106 -72 1922 164 0 0 chr1 9530465 9530758 -233133595 - AluJo SINE Alu -19 293 1 3681 183 21 37 chr1 9530758 9530830 -233133523 + L1MB8 LINE L1 6106 6178 0 1153 137 41 65 chr1 9530945 9531133 -233133220 + MER96B DNA MER1_type? 131 313 -104 1570 111 93 52 chr1 9531133 9531275 -233133078 + AluJb SINE Alu 1 136 -174 2222 101 3 3 chr1 9531275 9531581 -233132772 + AluSx SINE Alu 1 306 -6 1570 111 93 52 chr1 9531581 9531737 -233132616 + AluJb SINE Alu 136 310 0 1153 137 41 65 chr1 9531737 9531838 -233132515 + MER96B DNA MER1_type? 313 415 -2 30 117 0 0 chr1 9532083 9532246 -233132107 + GC_rich Low_complexity Low_complexity 1 163 0 26 50 0 0 chr1 9532423 9532463 -233131890 + GC_rich Low_complexity Low_complexity 1 40 0 195 370 63 16 chr1 9532527 9532716 -233131637 + L2 LINE L2 2869 3066 -247 382 237 53 9 chr1 9532870 9532984 -233131369 + MIR SINE MIR 19 137 -125 522 266 345 8 chr1 9533238 9533829 -233130524 + L2 LINE L2 1527 2316 -998 226 235 12 129 chr1 9534484 9534569 -233129784 - MER91A DNA MER1_type -65 75 1 923 272 60 23 chr1 9534581 9534934 -233129419 - MLT1I LTR MaLR 0 409 44 1571 231 119 39 chr1 9534955 9535092 -233129261 + L2 LINE L2 2315 2440 -873 2074 96 13 42 chr1 9535092 9535405 -233128948 + AluSq SINE Alu 1 304 -9 1571 231 119 39 chr1 9535405 9536021 -233128332 + L2 LINE L2 2440 3124 -189 325 367 92 15 chr1 9536028 9536363 -233127990 - L1M4c LINE L1 -5077 1307 947 270 0 0 0 chr1 9536363 9536393 -233127960 + (TCCC)n Simple_repeat Simple_repeat 2 31 0 2085 147 0 3 chr1 9536411 9536723 -233127630 - AluSx SINE Alu -1 311 1 248 269 82 45 chr1 9536744 9536878 -233127475 + L2 LINE L2 3113 3251 -62 959 233 75 0 chr1 9536901 9537039 -233127314 + MIR SINE MIR 5 131 -131 2172 114 0 0 chr1 9537039 9537336 -233127017 + AluSx SINE Alu 1 297 -15 959 233 75 0 chr1 9537336 9537437 -233126916 + MIR SINE MIR 131 262 0 452 254 17 76 chr1 9537446 9537549 -233126804 + L1ME4a LINE L1 5616 5724 -397 2238 97 3 16 chr1 9537549 9537886 -233126467 - AluSp SINE Alu 0 313 1 452 254 17 76 chr1 9537886 9538018 -233126335 + L1ME4a LINE L1 5724 5837 -284 1950 142 0 19 chr1 9538018 9538328 -233126025 - AluJb SINE Alu 0 312 9 382 341 26 70 chr1 9538418 9538688 -233125665 + L1ME4a LINE L1 5861 6118 -3 2337 99 3 0 chr1 9538825 9539137 -233125216 + AluSq SINE Alu 1 313 0 2159 129 0 0 chr1 9539408 9539753 -233124600 - AluSx SINE Alu 0 345 1 587 191 0 0 chr1 9539896 9540006 -233124347 - MER21B LTR ERV1 -423 440 331 261 75 0 0 chr1 9541436 9541476 -233122877 + (TG)n Simple_repeat Simple_repeat 2 41 0 1991 130 10 3 chr1 9542709 9543008 -233121345 + AluSx SINE Alu 1 301 -11 330 87 0 0 chr1 9543008 9543054 -233121299 + (GGAA)n Simple_repeat Simple_repeat 1 46 0 237 203 0 12 chr1 9543075 9543136 -233121217 - MIR SINE MIR -62 146 107 186 43 0 0 chr1 9543191 9543214 -233121139 + (GGA)n Simple_repeat Simple_repeat 1 23 0 375 296 79 37 chr1 9543293 9543482 -233120871 + MIR SINE MIR 20 216 -46 229 319 0 29 chr1 9545565 9545634 -233118719 - MIR SINE MIR -79 183 117 196 245 41 0 chr1 9546394 9546443 -233117910 - MIR SINE MIR -95 167 117 2205 132 0 0 chr1 9546518 9546829 -233117524 - AluSx SINE Alu -1 311 1 318 265 48 0 chr1 9546837 9546920 -233117433 + L2 LINE L2 3227 3313 0 589 303 39 6 chr1 9547894 9548072 -233116281 + MIR SINE MIR 21 204 -58 22 0 0 0 chr1 9548778 9548800 -233115553 + GC_rich Low_complexity Low_complexity 1 22 0 291 402 21 5 chr1 9551555 9551701 -233112652 - MIR SINE MIR -62 146 16 511 314 76 83 chr1 9551756 9552398 -233111955 + L2 LINE L2 2623 3264 -49 2114 101 34 0 chr1 9552432 9552729 -233111624 + AluSx SINE Alu 1 307 -5 575 253 20 13 chr1 9553177 9553327 -233111026 + MIR SINE MIR 35 185 -77 412 285 134 17 chr1 9554257 9554429 -233109924 + MIR SINE MIR 1 192 -70 330 204 0 0 chr1 9554542 9554635 -233109718 + (CA)n Simple_repeat Simple_repeat 1 93 0 341 315 9 9 chr1 9555330 9555438 -233108915 + MIR SINE MIR 47 154 -108 2290 109 3 0 chr1 9555490 9555792 -233108561 + AluSx SINE Alu 1 303 -9 314 357 14 14 chr1 9555927 9556067 -233108286 - MIR SINE MIR -77 185 46 245 286 71 14 chr1 9556306 9556376 -233107977 - MIR3 SINE MIR -23 185 112 355 281 91 78 chr1 9556602 9556933 -233107420 - L2 LINE L2 -96 3176 2842 1877 228 71 43 chr1 9556945 9557524 -233106829 - MLT1G1 LTR MaLR 0 595 1 385 275 109 0 chr1 9558295 9558433 -233105920 + L2 LINE L2 3119 3271 -1 2389 74 0 0 chr1 9558461 9558782 -233105571 + AluY SINE Alu 1 321 0 289 238 79 0 chr1 9558784 9558847 -233105506 + L2 LINE L2 3200 3267 -5 279 259 49 25 chr1 9558868 9558949 -233105404 + L2 LINE L2 3188 3270 -2 324 128 0 0 chr1 9560199 9560246 -233104107 + L2 LINE L2 3264 3310 -3 421 292 39 0 chr1 9560405 9560535 -233103818 + MIR SINE MIR 99 233 -29 1921 181 7 0 chr1 9560763 9561073 -233103280 + AluJb SINE Alu 1 312 0 300 348 84 0 chr1 9561077 9561232 -233103121 + HAL1 LINE L1 1140 1307 -1200 217 301 12 12 chr1 9561321 9561404 -233102949 - MIR SINE MIR -97 165 83 617 259 5 49 chr1 9561499 9561704 -233102649 - MIR SINE MIR -17 245 50 284 212 254 8 chr1 9561788 9561906 -233102447 - MER5B DNA MER1_type -4 174 28 503 200 150 50 chr1 9561963 9562123 -233102230 - MER5A DNA MER1_type -7 182 7 393 255 11 0 chr1 9562137 9562231 -233102122 - MER5B DNA MER1_type 0 178 84 515 207 39 67 chr1 9562246 9562361 -233101992 + MER5B DNA MER1_type 3 113 -65 2553 60 0 3 chr1 9562361 9562662 -233101691 - AluY SINE Alu -11 300 1 515 207 39 67 chr1 9562662 9562725 -233101628 + MER5B DNA MER1_type 113 176 -2 1818 115 31 15 chr1 9562841 9563102 -233101251 - AluSq SINE Alu -7 306 42 2460 97 3 0 chr1 9563120 9563430 -233100923 - AluSq SINE Alu -2 311 1 681 292 69 15 chr1 9564047 9564411 -233099942 - L1MC4a LINE L1 -107 6014 5629 330 187 93 0 chr1 9564718 9564793 -233099560 - LTR67 LTR ERVL -5 552 471 2536 65 0 0 chr1 9564793 9565085 -233099268 + AluY SINE Alu 1 292 -19 1486 160 14 98 chr1 9565167 9565537 -233098816 + L1ME LINE L1 5039 5439 -727 2480 96 0 3 chr1 9565537 9565851 -233098502 + AluSp SINE Alu 1 313 0 1486 160 14 98 chr1 9565851 9565948 -233098405 + L1ME LINE L1 5439 5457 -709 2242 105 3 17 chr1 9565948 9566243 -233098110 + AluSx SINE Alu 1 291 -21 1486 160 14 98 chr1 9566243 9566386 -233097967 + L1ME LINE L1 5457 5610 -556 * 3244 157 30 30 chr1 9566380 9566870 -233097483 - L1MB5 LINE L1 -247 5927 5435 1833 162 17 10 chr1 9566870 9567167 -233097186 - AluJb SINE Alu -13 299 1 3244 157 30 30 chr1 9567167 9567346 -233097007 - L1MB5 LINE L1 -738 5436 5258 1873 143 14 27 chr1 9567357 9567650 -233096703 - AluJo SINE Alu -12 300 12 1961 201 85 20 chr1 9567659 9567771 -233096582 - L1MB5 LINE L1 -1322 4824 4721 2320 129 8 18 chr1 9567771 9568165 -233096188 + MLT1B LTR MaLR 1 390 0 1961 201 85 20 chr1 9568165 9568559 -233095794 - L1MB5 LINE L1 -1425 4721 4285 775 170 133 32 chr1 9568559 9568603 -233095750 + MER63 DNA MER1_type 102 140 -921 2118 139 7 0 chr1 9568603 9568898 -233095455 + AluSx SINE Alu 1 297 -15 775 170 133 32 chr1 9568898 9569041 -233095312 + MER63 DNA MER1_type 140 308 -753 1988 135 25 0 chr1 9569057 9569339 -233095014 + AluJb SINE Alu 1 289 -23 2056 92 0 0 chr1 9569359 9569608 -233094745 + AluSg SINE Alu 1 249 -61 216 0 0 0 chr1 9569608 9569632 -233094721 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 650 261 153 5 chr1 9569709 9569931 -233094422 + MER110A LTR ERV1 56 310 -158 372 121 0 0 chr1 9569939 9569997 -233094356 - AluSq SINE Alu -1 299 242 1527 73 0 11 chr1 9570000 9570191 -233094162 - AluSq SINE Alu -124 189 1 687 228 37 7 chr1 9570191 9570401 -233093952 + MER110A LTR ERV1 272 491 0 * 2282 181 12 2 chr1 9570401 9570814 -233093539 + MER63 DNA MER1_type 433 849 -212 649 195 0 9 chr1 9570816 9570929 -233093424 + FLAM_C SINE Alu 6 117 -26 360 0 0 0 chr1 9570932 9570972 -233093381 + (TAA)n Simple_repeat Simple_repeat 2 41 0 911 176 25 42 chr1 9570976 9571051 -233093302 + MER63 DNA MER1_type 827 902 -158 1986 166 7 0 chr1 9571051 9571359 -233092994 - AluJb SINE Alu -2 310 1 911 176 25 42 chr1 9571359 9571402 -233092951 + MER63 DNA MER1_type 902 944 -116 2560 43 0 20 chr1 9571402 9571701 -233092652 - AluY SINE Alu -18 293 1 911 176 25 42 chr1 9571701 9571819 -233092534 + MER63 DNA MER1_type 944 1060 0 465 264 88 7 chr1 9571819 9571967 -233092386 + L1ME1 LINE L1 5999 6158 -8 236 324 20 29 chr1 9572076 9572178 -233092175 - LTR67 LTR ERVL -193 364 264 274 224 0 47 chr1 9572207 9572292 -233092061 - MLT1J LTR MaLR -321 190 110 * 655 281 0 18 chr1 9572234 9572405 -233091948 - LTR67 LTR ERVL -386 171 4 185 296 56 0 chr1 9572692 9572746 -233091607 - L2 LINE L2 -214 3058 3002 2143 133 0 0 chr1 9572755 9573048 -233091305 + AluSx SINE Alu 1 293 -19 2389 84 3 16 chr1 9573059 9573368 -233090985 + AluSq SINE Alu 1 305 -8 2352 79 3 0 chr1 9573368 9573659 -233090694 + AluY SINE Alu 1 292 -19 1695 175 3 43 chr1 9573848 9573973 -233090380 + AluJo SINE Alu 1 129 -183 2250 101 0 17 chr1 9573973 9574270 -233090083 - AluSg SINE Alu -18 292 1 1695 175 3 43 chr1 9574270 9574447 -233089906 + AluJo SINE Alu 129 291 -21 1579 156 13 80 chr1 9574467 9574608 -233089745 + L1MB3 LINE L1 5820 5969 -214 2315 133 37 42 chr1 9574608 9574799 -233089554 + MSTB LTR MaLR 1 191 -235 2136 120 7 0 chr1 9574799 9575098 -233089255 + AluSx SINE Alu 1 301 -11 2162 134 0 0 chr1 9575106 9575411 -233088942 + AluSx SINE Alu 1 305 -7 2315 133 37 42 chr1 9575411 9575638 -233088715 + MSTB LTR MaLR 198 426 0 1579 156 13 80 chr1 9575638 9575836 -233088517 + L1MB3 LINE L1 5969 6132 -51 761 156 31 0 chr1 9575836 9575964 -233088389 + FLAM_C SINE Alu 2 133 0 1579 156 13 80 chr1 9575964 9576013 -233088340 + L1MB3 LINE L1 6132 6183 0 195 47 23 47 chr1 9576027 9576055 -233088298 + (TA)n Simple_repeat Simple_repeat 2 29 -14 2419 65 3 0 chr1 9576055 9576347 -233088006 - AluY SINE Alu -18 293 1 2336 100 0 13 chr1 9576349 9576648 -233087705 - AluSx SINE Alu -17 295 1 195 47 23 47 chr1 9576648 9576659 -233087694 + (TA)n Simple_repeat Simple_repeat 30 43 0 315 71 0 0 chr1 9576665 9576707 -233087646 + (CA)n Simple_repeat Simple_repeat 2 43 0 1315 65 130 0 chr1 9576726 9576926 -233087427 - MER30 DNA MER1_type 0 230 5 340 246 0 116 chr1 9577097 9577235 -233087118 + L1MCa LINE L1 1995 2116 -4310 205 266 115 35 chr1 9577384 9577409 -233086944 - L2 LINE L2 -154 3118 3096 1876 134 0 0 chr1 9577409 9577663 -233086690 + AluSx SINE Alu 1 254 -58 205 266 115 35 chr1 9577663 9577750 -233086603 - L2 LINE L2 -176 3096 2997 736 220 13 98 chr1 9579179 9579415 -233084938 - MIR SINE MIR 0 262 47 191 261 43 0 chr1 9579521 9579590 -233084763 + L2 LINE L2 3150 3221 -51 324 94 0 0 chr1 9579596 9579649 -233084704 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 207 182 0 23 chr1 9579685 9579729 -233084624 + MIR SINE MIR 106 148 -114 2288 110 3 0 chr1 9579731 9580031 -233084322 + AluSx SINE Alu 2 302 -10 2320 88 7 3 chr1 9580079 9580374 -233083979 + AluSx SINE Alu 4 299 -13 1143 166 37 9 chr1 9580375 9580592 -233083761 + MLT1B LTR MaLR 166 388 -2 197 277 0 0 chr1 9580595 9580642 -233083711 + MIR3 SINE MIR 134 180 -28 244 234 0 0 chr1 9580761 9580808 -233083545 + AluSx SINE Alu 246 292 -9 2179 97 4 4 chr1 9580832 9581111 -233083242 + AluSx SINE Alu 21 299 -13 845 235 36 18 chr1 9581112 9581333 -233083020 - MLT1C LTR MaLR -58 409 185 416 143 0 0 chr1 9581335 9581405 -233082948 - AluSc SINE Alu -4 305 236 297 83 7 13 chr1 9581406 9581470 -233082883 - AluSp SINE Alu -133 170 112 * 640 180 29 7 chr1 9581445 9581584 -233082769 - MLT1C LTR MaLR -280 187 46 1266 166 0 0 chr1 9581585 9581772 -233082581 - AluJb SINE Alu -14 298 112 2125 134 0 0 chr1 9581794 9582086 -233082267 + AluSx SINE Alu 8 299 -13 450 167 0 0 chr1 9582667 9582739 -233081614 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 2820 228 46 4 chr1 9582761 9583521 -233080832 + L1M4 LINE L1 3802 4593 -1553 2589 64 0 6 chr1 9583521 9583834 -233080519 - AluSq SINE Alu -2 311 1 265 304 34 38 chr1 9584049 9584207 -233080146 - MIR SINE MIR -62 146 3 367 305 8 16 chr1 9584746 9584874 -233079479 - MIR SINE MIR -45 217 91 209 345 0 46 chr1 9584865 9584952 -233079401 + L2 LINE L2 3189 3271 -1 * 421 346 33 33 chr1 9584995 9585238 -233079115 - MIR SINE MIR -15 247 5 699 261 87 9 chr1 9586022 9586252 -233078101 + MIR SINE MIR 11 258 -4 452 264 19 0 chr1 9586333 9586439 -233077914 - MER81 DNA DNA -1 113 6 209 313 108 0 chr1 9587028 9587111 -233077242 - MIR SINE MIR -60 202 111 1427 189 32 6 chr1 9587874 9588187 -233076166 + L1MB5 LINE L1 5848 6168 -6 2607 167 61 6 chr1 9588191 9588730 -233075623 + L1MB8 LINE L1 5550 6118 -60 200 348 43 17 chr1 9589169 9589284 -233075069 - L2 LINE L2 -509 2805 2688 1896 125 21 3 chr1 9589284 9589619 -233074734 + L1MA5 LINE L1 5960 6300 0 200 83 0 28 chr1 9589716 9589752 -233074601 + (GGGGA)n Simple_repeat Simple_repeat 4 38 0 190 368 85 0 chr1 9589818 9589924 -233074429 - L2 LINE L2 -665 2649 2535 216 0 0 0 chr1 9590452 9590476 -233073877 + (CA)n Simple_repeat Simple_repeat 1 24 0 943 247 18 5 chr1 9590503 9590722 -233073631 + MIR SINE MIR 2 223 -39 2207 113 0 0 chr1 9592446 9592764 -233071589 - AluSx SINE Alu 0 318 1 209 148 0 19 chr1 9592906 9592960 -233071393 + (CTTG)n Simple_repeat Simple_repeat 2 54 0 886 123 11 22 chr1 9592980 9593159 -233071194 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 348 204 9 19 chr1 9593167 9593275 -233071078 + CT-rich Low_complexity Low_complexity 3 109 0 215 266 126 0 chr1 9593840 9593931 -233070422 - MIR3 SINE MIR -54 154 90 469 227 91 8 chr1 9594508 9594640 -233069713 - MIR SINE MIR -37 225 83 437 262 28 0 chr1 9595055 9595209 -233069144 - MIR SINE MIR -65 143 28 192 214 0 0 chr1 9595581 9595637 -233068716 + (CA)n Simple_repeat Simple_repeat 2 57 0 365 240 0 0 chr1 9597666 9597741 -233066612 - MIR SINE MIR -121 141 67 771 256 76 5 chr1 9597893 9598104 -233066249 + MIR SINE MIR 26 251 -11 407 355 161 10 chr1 9598970 9599485 -233064868 - L2 LINE L2 -646 2668 2076 611 209 7 22 chr1 9599487 9599626 -233064727 - FRAM SINE Alu -12 164 28 13746 96 31 4 chr1 9599726 9601879 -233062474 - L1P LINE L1 -1588 4558 2348 229 113 0 38 chr1 10002174 10002227 -232662126 + (GGGGA)n Simple_repeat Simple_repeat 5 55 0 342 360 0 0 chr1 10002234 10002398 -232661955 + G-rich Low_complexity Low_complexity 1 164 0 1705 151 10 21 chr1 10003053 10003344 -232661009 - AluJo SINE Alu -22 290 3 24 85 0 0 chr1 10003910 10003969 -232660384 + GC_rich Low_complexity Low_complexity 1 59 0 1298 92 11 5 chr1 10007698 10007883 -232656470 - AluSp SINE Alu -127 186 1 2029 135 6 3 chr1 10007965 10008269 -232656084 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr1 10008269 10008296 -232656057 + (CAATG)n Simple_repeat Simple_repeat 2 28 0 2296 73 7 3 chr1 10009005 10009307 -232655046 - AluY SINE Alu -8 303 1 607 111 0 0 chr1 10009339 10009438 -232654915 + HERVI LTR ERV1 1611 1709 -5187 2213 92 3 3 chr1 10009438 10009743 -232654610 + AluSx SINE Alu 1 305 -7 2307 86 20 0 chr1 10009743 10010046 -232654307 + AluY SINE Alu 1 309 -2 1922 125 4 0 chr1 10010080 10010397 -232653956 + AluSx SINE Alu 9 326 0 270 235 99 0 chr1 10010467 10010548 -232653805 + HERVI LTR ERV1 4187 4275 -3510 1358 140 14 19 chr1 10010560 10010696 -232653657 + AluSq SINE Alu 1 137 -176 2541 43 0 3 chr1 10010696 10010999 -232653354 + AluY SINE Alu 1 302 -9 1358 140 14 19 chr1 10010999 10011076 -232653277 + AluSq SINE Alu 137 213 -100 205 284 40 47 chr1 10011890 10012038 -232652315 + (CACG)n Simple_repeat Simple_repeat 4 150 0 222 235 10 110 chr1 10012207 10012462 -232651891 + (CACG)n Simple_repeat Simple_repeat 1 229 0 206 296 0 0 chr1 10012931 10012985 -232651368 + MIR SINE MIR 111 164 -98 209 60 40 40 chr1 10017287 10017337 -232647016 + (CCCCCG)n Simple_repeat Simple_repeat 4 53 0 1330 192 19 11 chr1 10017976 10018237 -232646116 - AluSx SINE Alu -49 263 1 3541 155 29 0 chr1 10018885 10019471 -232644882 - LTR26 LTR ERV1 0 603 1 305 292 133 0 chr1 10020902 10021015 -232643338 - L1MC4 LINE L1 -1332 6710 6583 6708 70 9 0 chr1 10021564 10022846 -232641507 - L1PA7 LINE L1 0 6154 4855 6812 93 2 3 chr1 10022847 10023922 -232640431 + L1PA7 LINE L1 3773 4846 -1300 12071 148 17 9 chr1 10024471 10027300 -232637053 - L1PA13 LINE L1 -2 6161 3320 220 307 132 9 chr1 10029037 10029151 -232635202 + L2 LINE L2 3180 3307 -6 798 313 50 22 chr1 10029777 10030413 -232633940 + L1M4 LINE L1 4544 5197 -949 1891 172 35 58 chr1 10030916 10031312 -232633041 + MLT1B LTR MaLR 4 390 0 304 291 86 26 chr1 10032161 10032278 -232632075 - L2 LINE L2 -1 3312 3189 220 161 43 86 chr1 10032547 10032640 -232631713 + (CTGGGG)n Simple_repeat Simple_repeat 1 89 0 1068 206 127 24 chr1 10033199 10033493 -232630860 - MER54A LTR ERVL -6 895 554 1857 128 10 14 chr1 10033493 10033783 -232630570 + AluSq SINE Alu 3 291 -22 1068 206 127 24 chr1 10033783 10033857 -232630496 - MER54A LTR ERVL -347 554 489 255 286 0 0 chr1 10036827 10037005 -232627348 + (CA)n Simple_repeat Simple_repeat 1 178 0 491 283 6 6 chr1 10037018 10037195 -232627158 + (CA)n Simple_repeat Simple_repeat 2 178 0 263 294 78 10 chr1 10037254 10037356 -232626997 - L2 LINE L2 -6 3266 3158 2253 102 0 3 chr1 10038461 10038764 -232625589 + AluSx SINE Alu 1 302 -10 2253 97 0 3 chr1 10038765 10039063 -232625290 + AluSc SINE Alu 1 297 -12 1380 133 0 0 chr1 10039066 10039262 -232625091 + AluSg/x SINE Alu 100 295 -15 650 159 68 38 chr1 10039263 10039395 -232624958 - AluJo/FRAM SINE Alu -32 280 145 1905 112 16 20 chr1 10039396 10039566 -232624787 - AluSq SINE Alu -8 305 136 2303 83 0 10 chr1 10039566 10039868 -232624485 - AluY SINE Alu -12 299 1 2346 91 0 0 chr1 10039868 10040163 -232624190 - AluSg SINE Alu -13 297 2 1905 112 16 20 chr1 10040163 10040294 -232624059 - AluSq SINE Alu -175 138 4 285 204 57 45 chr1 10040589 10040600 -232623753 + AluJb SINE Alu 125 134 -168 1628 152 13 44 chr1 10040600 10040732 -232623621 + AluJo SINE Alu 1 136 -176 1988 128 0 3 chr1 10040732 10041014 -232623339 + AluSx SINE Alu 14 294 -18 2145 105 16 3 chr1 10041014 10041318 -232623035 + AluSp SINE Alu 1 309 -4 2163 113 7 0 chr1 10041318 10041628 -232622725 + AluSp SINE Alu 1 312 -1 1628 152 13 44 chr1 10041628 10041808 -232622545 + AluJo SINE Alu 133 305 -7 285 204 57 45 chr1 10041808 10041884 -232622469 + AluJb SINE Alu 134 213 -89 469 262 33 31 chr1 10042066 10042472 -232621881 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 222 279 58 41 chr1 10042562 10042734 -232621619 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 202 260 0 52 chr1 10045653 10045749 -232618604 + (CCCTG)n Simple_repeat Simple_repeat 5 95 0 366 226 0 52 chr1 10049777 10049892 -232614461 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 261 262 6 27 chr1 10052724 10052907 -232611446 + (CACG)n Simple_repeat Simple_repeat 1 179 0 319 274 4 25 chr1 10052912 10053191 -232611162 + (CA)n Simple_repeat Simple_repeat 1 272 0 410 328 11 11 chr1 10053247 10053424 -232610929 + (CA)n Simple_repeat Simple_repeat 1 177 0 363 333 11 11 chr1 10053451 10053625 -232610728 + (CA)n Simple_repeat Simple_repeat 2 175 0 190 324 14 0 chr1 10058015 10058089 -232606264 - MIR SINE MIR -132 130 56 189 0 0 0 chr1 10059135 10059156 -232605197 + (CAGCC)n Simple_repeat Simple_repeat 1 21 0 294 274 60 18 chr1 10060588 10060756 -232603597 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 * 342 292 6 11 chr1 10060749 10060927 -232603426 + (TG)n Simple_repeat Simple_repeat 1 177 0 * 417 246 35 23 chr1 10060829 10061000 -232603353 + (TGAG)n Simple_repeat Simple_repeat 2 174 0 255 261 85 24 chr1 10061021 10061186 -232603167 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 2274 90 0 0 chr1 10061277 10061578 -232602775 - AluY SINE Alu -10 301 1 1303 172 13 89 chr1 10061578 10061881 -232602472 - AluJb SINE Alu -12 300 21 1663 149 57 4 chr1 10062038 10062319 -232602034 + AluJo SINE Alu 1 296 -16 2242 94 3 0 chr1 10062326 10062623 -232601730 + AluSx SINE Alu 1 298 -14 2162 88 10 7 chr1 10062730 10063025 -232601328 - AluY SINE Alu -15 296 1 1620 169 35 0 chr1 10063045 10063329 -232601024 - AluJo SINE Alu -15 297 4 2352 61 3 0 chr1 10063374 10063667 -232600686 - AluY SINE Alu -17 294 1 2113 112 7 0 chr1 10063845 10064140 -232600213 + AluSg SINE Alu 1 297 -13 414 142 142 19 chr1 10065198 10065304 -232599049 - MER20 DNA MER1_type -48 171 53 2021 121 7 0 chr1 10066284 10066573 -232597780 + AluSx SINE Alu 1 291 -21 186 200 147 21 chr1 10067011 10067106 -232597247 + L2 LINE L2 3133 3239 -33 2286 88 13 0 chr1 10069265 10069573 -232594780 + AluSx SINE Alu 1 312 0 240 265 0 15 chr1 10070888 10070912 -232593441 + AluJo SINE Alu 113 136 -166 1901 128 0 49 chr1 10070912 10071217 -232593136 + AluSx SINE Alu 1 290 -22 240 265 0 15 chr1 10071217 10071260 -232593093 + AluJo SINE Alu 136 179 -123 353 231 136 0 chr1 10071339 10071508 -232592845 + MER63 DNA MER1_type 825 1016 -45 1732 122 26 51 chr1 10071735 10072047 -232592306 - AluSx SINE Alu -7 305 2 915 76 0 0 chr1 10072048 10072166 -232592187 - AluSg/x SINE Alu -11 301 184 195 290 0 43 chr1 10072328 10072397 -232591956 + L2 LINE L2 2997 3062 -210 180 0 0 0 chr1 10072647 10072667 -232591686 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1627 111 43 0 chr1 10072681 10072915 -232591438 + AluSx SINE Alu 1 244 -68 312 61 41 0 chr1 10072990 10073039 -232591314 + AluJo SINE Alu 85 135 -167 1369 160 98 0 chr1 10073039 10073169 -232591184 + AluJo SINE Alu 1 117 -195 2493 41 3 22 chr1 10073169 10073485 -232590868 + AluY SINE Alu 1 310 -1 1369 160 98 0 chr1 10073485 10073598 -232590755 + AluJo SINE Alu 117 268 -44 2040 94 43 0 chr1 10073619 10073896 -232590457 + AluSx SINE Alu 1 289 -23 455 293 45 20 chr1 10077629 10077827 -232586526 + MER66B LTR ERV1 142 344 -142 1919 112 22 0 chr1 10077854 10078123 -232586230 + AluSx SINE Alu 1 275 -37 760 233 11 23 chr1 10078138 10078314 -232586039 + AluSq SINE Alu 137 310 -3 442 172 108 0 chr1 10078314 10078407 -232585946 + MER66B LTR ERV1 384 486 0 1400 84 0 0 chr1 10078441 10078620 -232585733 + AluY SINE Alu 1 179 -132 286 175 35 0 chr1 10078621 10078678 -232585675 + AluSp/q SINE Alu 240 298 -5 457 258 24 0 chr1 10078823 10078947 -232585406 - MER66-int LTR ERV1 -6337 339 213 2130 110 0 16 chr1 10079037 10079345 -232585008 - AluSc SINE Alu -6 303 1 930 124 0 28 chr1 10079346 10079491 -232584862 - FLAM_C SINE Alu -2 141 1 1024 189 32 57 chr1 10079491 10079912 -232584441 + MER66-int LTR ERV1 653 1114 -5562 2136 120 0 0 chr1 10079912 10080204 -232584149 - AluSc SINE Alu -17 292 1 279 67 0 22 chr1 10080204 10080249 -232584104 - Alu SINE Alu -258 44 1 * 339 62 15 15 chr1 10080249 10080293 -232584060 - Alu SINE Alu -264 44 1 344 47 16 16 chr1 10080293 10080337 -232584016 - AluS SINE Alu -259 44 1 299 78 16 16 chr1 10080337 10080381 -232583972 - AluS SINE Alu -259 44 1 292 79 16 16 chr1 10080381 10080425 -232583928 - Alu SINE Alu -264 44 1 1263 200 76 5 chr1 10080441 10080926 -232583427 + MER66-int LTR ERV1 1445 1999 -4677 2066 119 7 0 chr1 10083030 10083333 -232581020 + AluSc SINE Alu 1 305 -4 1144 144 0 0 chr1 10083400 10083581 -232580772 + AluSg/x SINE Alu 125 305 -7 2060 123 3 0 chr1 10083581 10083874 -232580479 + AluSp SINE Alu 1 294 -19 2272 76 10 0 chr1 10083878 10084167 -232580186 + AluY SINE Alu 1 292 -19 1439 178 14 51 chr1 10084338 10084465 -232579888 + AluJo SINE Alu 21 151 -161 2196 93 7 0 chr1 10084465 10084756 -232579597 + AluY SINE Alu 1 293 -18 1439 178 14 51 chr1 10084756 10084921 -232579432 + AluJo SINE Alu 151 302 -10 2141 105 7 0 chr1 10088632 10088928 -232575425 + AluSx SINE Alu 1 298 -14 2270 117 0 0 chr1 10089255 10089564 -232574789 + AluSx SINE Alu 1 309 -3 2044 116 0 23 chr1 10089564 10089874 -232574479 + AluSc SINE Alu 1 303 -6 2101 96 6 38 chr1 10090684 10090997 -232573356 + AluSx SINE Alu 1 303 -9 347 100 0 0 chr1 10090998 10091048 -232573305 + Alu SINE Alu 1 50 -258 2157 112 3 0 chr1 10091058 10091352 -232573001 - AluSx SINE Alu -16 296 2 2064 103 3 10 chr1 10091359 10091534 -232572819 - AluSq SINE Alu -4 309 135 2471 43 7 3 chr1 10091534 10091834 -232572519 - AluY SINE Alu -10 301 1 2064 103 3 10 chr1 10091834 10091949 -232572404 - AluSq SINE Alu -178 135 21 814 215 6 0 chr1 10092086 10092244 -232572109 - FRAM SINE Alu -16 160 2 609 196 43 43 chr1 10092249 10092367 -232571986 + MER20 DNA MER1_type 57 177 -42 1504 195 17 14 chr1 10092367 10092664 -232571689 + AluJo SINE Alu 1 298 -14 609 196 43 43 chr1 10092664 10092708 -232571645 + MER20 DNA MER1_type 176 219 0 278 238 24 12 chr1 10093639 10093723 -232570630 + (CTGGGG)n Simple_repeat Simple_repeat 6 90 0 189 0 0 0 chr1 10094071 10094092 -232570261 + (CCG)n Simple_repeat Simple_repeat 2 22 0 219 167 42 21 chr1 10095739 10095787 -232568566 + L3 LINE CR1 612 660 -917 918 98 15 8 chr1 10097490 10097622 -232566731 + AluSp SINE Alu 1 133 -180 2108 123 3 3 chr1 10097634 10097943 -232566410 + AluY SINE Alu 1 309 -2 2287 93 3 0 chr1 10098029 10098329 -232566024 - AluY SINE Alu -10 301 1 1551 167 20 30 chr1 10098633 10098932 -232565421 - AluSx SINE Alu -16 296 1 2395 69 0 3 chr1 10098935 10099241 -232565112 - AluY SINE Alu -6 305 1 1911 122 4 0 chr1 10099281 10099559 -232564794 - AluY SINE Alu -5 306 28 1899 121 46 0 chr1 10099781 10100062 -232564291 - AluSg SINE Alu -16 294 1 787 193 12 30 chr1 10100067 10100233 -232564120 - AluJo/FRAM SINE Alu -16 296 134 1633 182 19 0 chr1 10100233 10100540 -232563813 - 7SLRNA srpRNA srpRNA -7 313 1 298 211 53 0 chr1 10100782 10100858 -232563495 + AluJ/FRAM SINE Alu 223 302 0 1885 140 20 0 chr1 10100861 10101154 -232563199 + AluSx SINE Alu 1 299 -13 23 0 0 0 chr1 10101839 10101862 -232562491 + GC_rich Low_complexity Low_complexity 1 23 0 26 82 0 0 chr1 10102363 10102424 -232561929 + GC_rich Low_complexity Low_complexity 1 61 0 340 210 0 0 chr1 10102505 10102586 -232561767 - AluSg SINE Alu 0 300 220 726 149 182 7 chr1 10102587 10102741 -232561612 - AluSg SINE Alu -124 186 6 1670 143 0 21 chr1 10102789 10103076 -232561277 + AluJb SINE Alu 15 295 -17 304 214 208 45 chr1 10103268 10103446 -232560907 - L1MC4 LINE L1 -64 7978 7772 1728 130 0 0 chr1 10103550 10103804 -232560549 - AluSx SINE Alu 0 312 59 851 85 15 31 chr1 10103821 10103951 -232560402 + AluSp/q SINE Alu 167 294 -19 1755 131 75 0 chr1 10103954 10104236 -232560117 + AluSx SINE Alu 1 303 -9 1256 153 157 0 chr1 10104240 10104476 -232559877 - AluJb SINE Alu -19 293 21 646 268 36 54 chr1 10104551 10104594 -232559759 - MER74B LTR ERVL -82 540 498 8041 57 2 0 chr1 10104594 10105561 -232558792 + LTR5 LTR ERVK 1 969 0 646 268 36 54 chr1 10105561 10105721 -232558632 - MER74B LTR ERVL -124 498 337 2204 101 0 3 chr1 10105721 10106019 -232558334 + AluSq SINE Alu 1 297 -16 2284 104 0 0 chr1 10106019 10106326 -232558027 + AluY SINE Alu 1 307 -4 646 268 36 54 chr1 10106326 10106456 -232557897 - MER74B LTR ERVL -283 339 211 225 289 87 59 chr1 10106639 10106955 -232557398 + L1M3e LINE L1 656 1544 -5486 3773 47 47 4 chr1 10107039 10107509 -232556844 - LTR2B LTR ERV1 0 490 1 21774 119 15 7 chr1 10107509 10111022 -232553331 - Harlequin LTR ERV1 -1 6895 3352 5770 61 44 11 chr1 10111021 10111558 -232552795 - Harlequin LTR ERV1 -4322 2574 1989 * 2640 27 0 0 chr1 10111558 10111859 -232552494 + AluY SINE Alu 1 301 -10 5770 61 44 11 chr1 10111859 10112292 -232552061 - Harlequin LTR ERV1 -4907 1989 1572 * 5980 85 20 6 chr1 10112278 10113165 -232551188 - Harlequin LTR ERV1 -5996 900 1 3928 32 42 11 chr1 10113165 10113640 -232550713 - LTR2B LTR ERV1 0 490 1 21 0 0 0 chr1 10115021 10115042 -232549311 + GC_rich Low_complexity Low_complexity 1 21 0 208 203 0 94 chr1 10115429 10115493 -232548860 + (CCCCG)n Simple_repeat Simple_repeat 1 58 0 272 248 76 19 chr1 10117169 10117274 -232547079 + L2 LINE L2 3102 3212 -101 372 234 80 7 chr1 10117301 10117438 -232546915 - REP3 LTR ERV -294 268 122 3119 152 56 2 chr1 10117560 10118153 -232546200 + MER41B LTR ERV1 4 628 -7 229 200 20 0 chr1 10118159 10118209 -232546144 + L2 LINE L2 3220 3270 -2 1864 143 20 3 chr1 10118266 10118560 -232545793 - AluSx SINE Alu -13 299 1 2014 119 3 22 chr1 10118563 10118875 -232545478 - AluSx SINE Alu -6 306 1 1051 96 0 0 chr1 10118875 10119010 -232545343 - AluSq/x SINE Alu -176 136 2 2260 112 0 6 chr1 10119227 10119539 -232544814 + AluSq SINE Alu 1 310 -3 1662 176 3 3 chr1 10119600 10119889 -232544464 + AluJb SINE Alu 2 290 -22 1995 100 10 20 chr1 10119968 10120267 -232544086 + AluSc SINE Alu 1 296 -13 320 291 0 39 chr1 10121787 10121969 -232542384 + C-rich Low_complexity Low_complexity 4 178 0 343 224 3 50 chr1 10121987 10122328 -232542025 + C-rich Low_complexity Low_complexity 1 325 0 202 205 26 39 chr1 10124466 10124544 -232539809 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr1 10127156 10127180 -232537173 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 10127289 10127312 -232537041 + GC_rich Low_complexity Low_complexity 1 23 0 215 170 38 0 chr1 10127373 10127426 -232536927 + (CGGG)n Simple_repeat Simple_repeat 1 55 0 28 61 0 0 chr1 10131179 10131228 -232533125 + GC_rich Low_complexity Low_complexity 1 49 0 2300 46 0 3 chr1 10134395 10134704 -232529649 - AluY SINE Alu 0 308 1 1945 113 25 0 chr1 10134858 10135133 -232529220 - AluSx SINE Alu -30 282 1 216 0 0 0 chr1 10135135 10135159 -232529194 + (T)n Simple_repeat Simple_repeat 1 24 0 1874 153 33 0 chr1 10135159 10135460 -232528893 - AluJb SINE Alu 0 312 2 674 197 16 8 chr1 10135464 10135591 -232528762 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr1 10136804 10137104 -232527249 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr1 10137180 10137474 -232526879 + AluSg SINE Alu 1 300 -10 1544 175 26 23 chr1 10137483 10137622 -232526731 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr1 10137622 10137919 -232526434 + AluSq SINE Alu 3 299 -14 1544 175 26 23 chr1 10137919 10138087 -232526266 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr1 10138179 10138307 -232526046 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr1 10138309 10138383 -232525970 - Alu SINE Alu -19 292 222 1016 115 48 0 chr1 10138383 10138570 -232525783 - LTR10A LTR ERV1 0 609 366 2386 65 20 0 chr1 10138570 10138864 -232525489 - AluY SINE Alu -11 300 1 2120 115 3 3 chr1 10138864 10139168 -232525185 - AluSx SINE Alu -8 304 1 579 131 0 0 chr1 10139168 10139267 -232525086 - HERV17 LTR ERV1 -5187 1709 1611 * 1302 158 3 81 chr1 10139234 10139299 -232525054 - HERV17 LTR ERV1 -3313 4472 4404 2557 50 0 0 chr1 10139299 10139600 -232524753 + AluY SINE Alu 1 301 -10 1302 158 3 81 chr1 10139600 10139734 -232524619 - HERV17 LTR ERV1 -3381 4404 4303 1998 113 0 53 chr1 10139734 10140054 -232524299 - AluSx SINE Alu -9 303 1 1302 158 3 81 chr1 10140054 10140163 -232524190 - HERV17 LTR ERV1 -3482 4303 4187 1883 121 24 17 chr1 10140234 10140532 -232523821 - AluY SINE Alu -10 301 2 578 140 26 88 chr1 10140533 10140873 -232523480 - HERV17 LTR ERV1 -5760 1136 704 * 1380 186 69 9 chr1 10140860 10141194 -232523159 - HERV17 LTR ERV1 -4918 1731 1378 2329 58 17 0 chr1 10141509 10141803 -232522550 + AluY SINE Alu 2 300 -11 2160 82 21 7 chr1 10142506 10142797 -232521556 - AluY SINE Alu -16 295 1 2157 116 3 0 chr1 10142805 10143107 -232521246 - AluSx SINE Alu -9 303 1 1078 129 6 0 chr1 10144126 10144289 -232520064 + AluSc SINE Alu 146 309 0 302 271 68 0 chr1 10144289 10144407 -232519946 + HUERS-P1 LTR ERV1 2277 2402 -3861 1796 159 3 0 chr1 10144667 10144963 -232519390 - AluSx SINE Alu -15 297 1 940 134 0 0 chr1 10144963 10145097 -232519256 - AluSq/x SINE Alu -177 135 2 2059 125 0 3 chr1 10145105 10145402 -232518951 - AluSp SINE Alu -17 296 1 2475 65 0 7 chr1 10146395 10146705 -232517648 + AluY SINE Alu 1 308 -3 2455 64 0 6 chr1 10148774 10149085 -232515268 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 10149134 10149437 -232514916 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 10149439 10149742 -232514611 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 10149748 10150041 -232514312 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 10150041 10150182 -232514171 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 10150188 10150480 -232513873 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 10151531 10151842 -232512511 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 10152655 10152949 -232511404 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 10154944 10155000 -232509353 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 10155087 10155388 -232508965 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 10155396 10155686 -232508667 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 10155736 10155874 -232508479 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 10155916 10155951 -232508402 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 10155951 10156211 -232508142 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 10156211 10156345 -232508008 - L1M4 LINE L1 -1467 4679 4547 2138 102 0 10 chr1 10156345 10156650 -232507703 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 10156650 10156771 -232507582 - L1M4 LINE L1 -1599 4547 4428 2431 72 7 0 chr1 10156771 10157078 -232507275 + AluY SINE Alu 1 309 -2 2856 224 49 42 chr1 10157078 10157470 -232506883 - L1M4 LINE L1 -1718 4428 4040 1805 113 4 0 chr1 10157470 10157726 -232506627 + AluSp SINE Alu 49 305 -8 1968 92 58 20 chr1 10157727 10158019 -232506334 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 10158019 10158453 -232505900 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 10158454 10158519 -232505834 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 10158581 10158645 -232505708 - L1MC3 LINE L1 -225 7560 7496 1700 123 22 75 chr1 10160448 10160766 -232503587 + AluSq SINE Alu 1 301 -12 854 200 0 25 chr1 10160766 10160926 -232503427 + AluSg/x SINE Alu 138 293 -17 842 102 16 23 chr1 10161009 10161137 -232503216 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 10161139 10161230 -232503123 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 10161230 10161663 -232502690 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 10161663 10161874 -232502479 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 10161879 10161961 -232502392 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 10161980 10162320 -232502033 - LTR10A LTR ERV1 -62 547 119 1829 135 204 13 chr1 10162320 10162698 -232501655 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 10162698 10162837 -232501516 - LTR10A LTR ERV1 -490 119 1 25 35 0 52 chr1 10163388 10163446 -232500907 + GC_rich Low_complexity Low_complexity 1 55 0 189 68 68 0 chr1 10163559 10163603 -232500750 + (CGGGG)n Simple_repeat Simple_repeat 1 47 0 680 135 10 0 chr1 10164123 10164227 -232500126 - AluSq/x SINE Alu -208 105 1 1171 194 0 5 chr1 10165946 10166168 -232498185 - AluSg/x SINE Alu -7 305 85 1721 145 39 0 chr1 10166171 10166454 -232497899 - AluSx SINE Alu -18 294 1 2028 108 20 7 chr1 10167481 10167787 -232496566 - AluSq SINE Alu 0 313 4 1776 163 20 0 chr1 10167789 10168089 -232496264 - AluSx SINE Alu -6 306 1 318 339 6 27 chr1 10168999 10169182 -232495171 + (CACG)n Simple_repeat Simple_repeat 1 179 0 * 494 279 6 6 chr1 10169094 10169273 -232495080 + (CA)n Simple_repeat Simple_repeat 1 179 0 315 238 17 0 chr1 10169301 10169473 -232494880 + (CA)n Simple_repeat Simple_repeat 2 176 0 383 279 0 53 chr1 10169497 10169687 -232494666 + (CA)n Simple_repeat Simple_repeat 1 180 0 216 0 0 0 chr1 10169744 10169768 -232494585 + (CA)n Simple_repeat Simple_repeat 2 25 0 2057 114 0 10 chr1 10170308 10170605 -232493748 - AluSg SINE Alu -16 294 1 1170 144 35 5 chr1 10171886 10172088 -232492265 + AluJb SINE Alu 85 292 -20 2148 76 7 26 chr1 10172100 10172404 -232491949 + AluY SINE Alu 12 309 -2 1827 118 3 88 chr1 10172777 10173106 -232491247 - AluSx SINE Alu -11 301 1 2058 138 0 3 chr1 10173113 10173418 -232490935 - AluSp SINE Alu -9 304 1 2416 67 0 0 chr1 10176491 10176791 -232487562 - AluY SINE Alu -11 300 1 1470 195 21 7 chr1 10176803 10177085 -232487268 - AluJb SINE Alu -26 286 1 1948 143 13 0 chr1 10177089 10177396 -232486957 - AluSx SINE Alu -1 311 1 2157 124 0 10 chr1 10179032 10179339 -232485014 - AluSq SINE Alu -8 305 2 270 196 18 0 chr1 10181187 10181243 -232483110 - MLT1I LTR MaLR 0 409 353 1568 191 20 10 chr1 10181330 10181624 -232482729 + AluJb SINE Alu 1 297 -15 2805 3 0 0 chr1 10181625 10181933 -232482420 + AluYa5 SINE Alu 1 308 -3 1646 164 3 24 chr1 10181950 10182242 -232482111 + AluSx SINE Alu 4 289 -23 2148 112 7 0 chr1 10182250 10182555 -232481798 + AluSc SINE Alu 1 307 -2 2334 80 0 16 chr1 10182569 10182883 -232481470 + AluY SINE Alu 1 309 -2 2360 80 0 6 chr1 10184623 10184934 -232479419 + AluY SINE Alu 1 309 -2 1884 136 4 0 chr1 10184983 10185286 -232479067 - AluSc SINE Alu 0 304 1 1892 155 0 7 chr1 10185288 10185591 -232478762 - AluSx SINE Alu -11 301 1 1904 123 17 17 chr1 10185597 10185890 -232478463 - AluSp SINE Alu -20 293 1 780 191 0 14 chr1 10185890 10186031 -232478322 - AluJb SINE Alu -171 141 3 1860 134 20 0 chr1 10186037 10186329 -232478024 - AluSx SINE Alu -14 298 1 2087 100 3 32 chr1 10187380 10187691 -232476662 - AluSp SINE Alu -11 302 1 2054 126 0 0 chr1 10188504 10188798 -232475555 - AluSq SINE Alu -19 294 1 296 161 18 0 chr1 10190793 10190849 -232473504 - MLT1I LTR MaLR 0 409 353 1554 206 0 13 chr1 10190936 10191237 -232473116 + AluJb SINE Alu 1 297 -15 1971 121 10 10 chr1 10191245 10191535 -232472818 + AluSx SINE Alu 13 302 -10 281 261 203 7 chr1 10191585 10191723 -232472630 - MLT1A1 LTR MaLR -73 292 128 2856 224 49 42 chr1 10191765 10191800 -232472553 - L1M4 LINE L1 -1434 4712 4679 1964 100 0 0 chr1 10191800 10192060 -232472293 + AluSx SINE Alu 2 261 -51 2856 224 49 42 chr1 10192060 10192194 -232472159 - L1M4 LINE L1 -1467 4679 4547 2152 98 0 10 chr1 10192194 10192499 -232471854 - AluSx SINE Alu -10 302 1 2856 224 49 42 chr1 10192499 10192620 -232471733 - L1M4 LINE L1 -1599 4547 4428 2385 69 10 0 chr1 10192620 10192924 -232471429 + AluY SINE Alu 1 307 -4 2856 224 49 42 chr1 10192924 10193316 -232471037 - L1M4 LINE L1 -1718 4428 4040 1812 113 4 0 chr1 10193316 10193573 -232470780 + AluSp SINE Alu 49 306 -7 1968 92 58 20 chr1 10193574 10193866 -232470487 + AluY SINE Alu 1 303 -8 2856 224 49 42 chr1 10193866 10194300 -232470053 - L1M4 LINE L1 -2105 4041 3510 292 169 31 15 chr1 10194301 10194366 -232469987 - L1MD3 LINE L1 -10 7985 7920 250 203 47 31 chr1 10194428 10194492 -232469861 - L1MC3 LINE L1 -225 7560 7496 1759 123 23 52 chr1 10196296 10196606 -232467747 + AluSq SINE Alu 1 301 -12 811 194 0 25 chr1 10196606 10196766 -232467587 + AluSg/x SINE Alu 140 295 -17 842 102 16 23 chr1 10196849 10196977 -232467376 - FLAM_C SINE Alu -16 127 1 1863 129 13 26 chr1 10196979 10197070 -232467283 - AluSx SINE Alu -13 299 208 1495 182 102 62 chr1 10197070 10197503 -232466850 + LTR7 LTR ERV1 1 450 0 1863 129 13 26 chr1 10197503 10197714 -232466639 - AluSx SINE Alu -104 208 1 489 134 24 0 chr1 10197719 10197801 -232466552 - Alu SINE Alu 0 310 227 2137 158 140 0 chr1 10197820 10198160 -232466193 - LTR10A LTR ERV1 -62 547 119 1808 133 207 13 chr1 10198160 10198537 -232465816 + LTR7 LTR ERV1 1 450 0 2137 158 140 0 chr1 10198537 10198676 -232465677 - LTR10A LTR ERV1 -490 119 1 24 47 0 47 chr1 10199225 10199289 -232465064 + GC_rich Low_complexity Low_complexity 1 61 0 208 111 67 0 chr1 10199359 10199429 -232464924 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 1844 106 41 10 chr1 10200114 10200406 -232463947 - AluSg SINE Alu -7 303 3 1865 50 50 0 chr1 10200416 10200656 -232463697 - AluY SINE Alu 0 311 60 1108 39 0 0 chr1 10200656 10200783 -232463570 - AluY SINE Alu -176 135 9 1830 152 0 0 chr1 10200791 10201081 -232463272 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 10201344 10201452 -232462901 - FLAM_A SINE Alu -15 127 20 2324 72 13 0 chr1 10201469 10201776 -232462577 - AluY SINE Alu 0 311 1 1925 130 3 7 chr1 10201787 10202087 -232462266 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr1 10203803 10204095 -232460258 - AluY SINE Alu -17 294 1 1346 149 0 0 chr1 10204102 10204310 -232460043 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr1 10204313 10204511 -232459842 - AluSg/x SINE Alu -17 295 87 2077 79 18 0 chr1 10204965 10205301 -232459052 - AluSp SINE Alu 0 341 1 994 70 8 0 chr1 10205305 10205434 -232458919 - AluSp SINE Alu -183 130 1 1834 144 17 0 chr1 10205436 10205727 -232458626 - AluSx SINE Alu -16 296 1 435 309 8 6 chr1 10206682 10207104 -232457249 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr1 10207135 10207455 -232456898 + (CA)n Simple_repeat Simple_repeat 1 322 0 325 314 5 32 chr1 10207476 10207661 -232456692 + (CA)n Simple_repeat Simple_repeat 1 180 0 2035 118 0 10 chr1 10208605 10208902 -232455451 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr1 10210233 10210438 -232453915 + AluJb SINE Alu 85 292 -20 1428 134 36 82 chr1 10210439 10210745 -232453608 + AluSc SINE Alu 1 292 -17 1057 165 0 0 chr1 10210745 10210915 -232453438 + AluSp SINE Alu 134 303 -10 1747 122 3 91 chr1 10210917 10211237 -232453116 + AluSx SINE Alu 1 292 -20 1883 112 14 20 chr1 10211612 10211908 -232452445 - AluY SINE Alu -17 294 1 835 116 16 16 chr1 10211912 10212041 -232452312 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr1 10214636 10214931 -232449422 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr1 10215424 10215682 -232448671 - AluSq SINE Alu -56 257 1 965 183 106 84 chr1 10215688 10215905 -232448448 - AluJb SINE Alu -20 292 66 2099 110 0 0 chr1 10215905 10216196 -232448157 + AluSg SINE Alu 1 291 -19 965 183 106 84 chr1 10216196 10216251 -232448102 - AluJb SINE Alu -246 66 14 22 35 0 0 chr1 10216262 10216291 -232448062 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr1 10216291 10216489 -232447864 - AluSx SINE Alu -112 200 1 1952 132 10 0 chr1 10218675 10218964 -232445389 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr1 10219179 10219235 -232445118 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr1 10219333 10219612 -232444741 + AluJb SINE Alu 9 287 -25 1880 144 10 0 chr1 10219632 10219931 -232444422 + AluSx SINE Alu 7 308 -4 1776 132 10 46 chr1 10219935 10220080 -232444273 + AluSx SINE Alu 1 131 -181 2226 98 0 3 chr1 10220080 10220385 -232443968 + AluSg SINE Alu 1 304 -6 1776 132 10 46 chr1 10220385 10220542 -232443811 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr1 10220585 10220860 -232443493 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr1 10220920 10221040 -232443313 - AluSq/x SINE Alu -192 120 1 1498 230 72 0 chr1 10221055 10221473 -232442880 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr1 10221472 10221536 -232442817 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr1 10221599 10221663 -232442690 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr1 10224629 10224929 -232439424 - AluJo SINE Alu -10 302 1 1939 114 28 7 chr1 10225005 10225294 -232439059 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr1 10225304 10225443 -232438910 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr1 10225443 10225740 -232438613 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr1 10225740 10225908 -232438445 + AluSx SINE Alu 138 309 -3 918 70 0 8 chr1 10226000 10226128 -232438225 - FLAM_C SINE Alu -16 127 1 433 71 57 43 chr1 10226130 10226200 -232438153 - Alu SINE Alu -19 292 222 968 118 51 0 chr1 10226200 10226377 -232437976 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr1 10226379 10226687 -232437666 - AluY SINE Alu -3 308 1 180 0 0 0 chr1 10226696 10226716 -232437637 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr1 10226716 10226948 -232437405 - AluSg SINE Alu -75 235 1 2236 92 3 3 chr1 10227001 10227305 -232437048 - AluSx SINE Alu -8 304 1 2107 102 3 13 chr1 10227305 10227609 -232436744 - AluSx SINE Alu -11 301 1 514 91 0 109 chr1 10227609 10227682 -232436671 - Harlequin LTR ERV1 -5187 1709 1650 2292 54 3 10 chr1 10227682 10227980 -232436373 + AluY SINE Alu 1 296 -15 514 91 0 109 chr1 10227980 10228016 -232436337 - Harlequin LTR ERV1 -5246 1650 1612 321 100 0 0 chr1 10228016 10228066 -232436287 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 218 39 10 chr1 10228083 10228289 -232436064 + AluY SINE Alu 1 212 -99 21 57 0 0 chr1 10228461 10228496 -232435857 + GC_rich Low_complexity Low_complexity 1 35 0 312 200 0 0 chr1 10228518 10228598 -232435755 + G-rich Low_complexity Low_complexity 3 82 0 2308 67 3 3 chr1 10229100 10229399 -232434954 + AluY SINE Alu 1 299 -12 1244 147 0 28 chr1 10229399 10229581 -232434772 + AluSq SINE Alu 134 312 -1 916 208 0 0 chr1 10229581 10229740 -232434613 + AluJo/FRAM SINE Alu 137 295 -7 255 319 104 15 chr1 10229777 10230047 -232434306 - L1MEd LINE L1 -5206 913 620 1776 144 14 7 chr1 10230246 10230538 -232433815 - AluJb SINE Alu -18 294 1 355 299 58 39 chr1 10230541 10230695 -232433658 - L1MEd LINE L1 -5949 170 14 25 0 0 0 chr1 10231210 10231235 -232433118 + GC_rich Low_complexity Low_complexity 1 25 0 202 205 26 39 chr1 10233376 10233454 -232430899 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr1 10236053 10236077 -232428276 + (CGAG)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr1 10236184 10236207 -232428146 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1 10236299 10236320 -232428033 + GC_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr1 10240062 10240111 -232424242 + GC_rich Low_complexity Low_complexity 1 49 0 2312 43 0 3 chr1 10243308 10243617 -232420736 - AluY SINE Alu 0 308 1 1959 109 25 0 chr1 10243771 10244046 -232420307 - AluSx SINE Alu -30 282 1 1743 161 35 0 chr1 10244048 10244333 -232420020 - AluJb SINE Alu -16 296 2 674 197 16 8 chr1 10244337 10244464 -232419889 - FLAM_C SINE Alu -5 128 1 1206 163 80 73 chr1 10245677 10245977 -232418376 - AluJo SINE Alu -10 302 1 1949 119 27 7 chr1 10246053 10246347 -232418006 + AluSg SINE Alu 1 300 -10 1544 175 26 23 chr1 10246356 10246495 -232417858 + AluSx SINE Alu 1 138 -174 2130 104 3 3 chr1 10246495 10246792 -232417561 + AluSq SINE Alu 3 299 -14 1544 175 26 23 chr1 10246792 10246960 -232417393 + AluSx SINE Alu 138 309 -3 894 78 0 8 chr1 10247052 10247180 -232417173 - FLAM_C SINE Alu -16 127 1 484 95 0 40 chr1 10247182 10247256 -232417097 - Alu SINE Alu -19 292 222 1016 115 48 0 chr1 10247256 10247443 -232416910 - LTR10A LTR ERV1 0 609 366 2386 65 20 0 chr1 10247443 10247737 -232416616 - AluY SINE Alu -11 300 1 2120 115 3 3 chr1 10247737 10248041 -232416312 - AluSx SINE Alu -8 304 1 579 131 0 0 chr1 10248041 10248140 -232416213 - Harlequin LTR ERV1 -5187 1709 1611 2341 73 3 3 chr1 10248172 10248475 -232415878 + AluY SINE Alu 1 303 -8 243 0 0 0 chr1 10249184 10249211 -232415142 + (CATTG)n Simple_repeat Simple_repeat 2 28 0 2029 135 6 3 chr1 10249211 10249515 -232414838 - AluSx SINE Alu -4 308 1 2286 88 3 3 chr1 10249597 10249904 -232414449 + AluSp SINE Alu 1 307 -6 198 0 0 0 chr1 10250158 10250180 -232414173 + (TG)n Simple_repeat Simple_repeat 1 22 0 8224 51 20 5 chr1 10250195 10251187 -232413166 - LTR13 LTR ERVK 0 1007 1 1907 140 0 7 chr1 10251187 10251479 -232412874 + AluSx SINE Alu 8 297 -15 296 235 52 17 chr1 10251492 10251607 -232412746 - L1 LINE L1 -1462 4684 4566 708 254 55 0 chr1 10251631 10251796 -232412557 - FRAM SINE Alu -9 167 1 2858 219 49 46 chr1 10251796 10252005 -232412348 - L1 LINE L1 -1690 4456 4249 2398 82 0 0 chr1 10252005 10252308 -232412045 - AluY SINE Alu 0 311 9 2858 219 49 46 chr1 10252308 10253042 -232411311 - L1 LINE L1 -1897 4249 3510 262 219 31 16 chr1 10253043 10253107 -232411246 - L1MC3 LINE L1 -12 7773 7709 237 197 49 33 chr1 10253173 10253234 -232411119 - L1MC3 LINE L1 -228 7557 7496 1842 128 23 20 chr1 10255034 10255338 -232409015 + AluSq SINE Alu 1 305 -8 853 171 12 24 chr1 10255338 10255502 -232408851 + AluSg/x SINE Alu 138 299 -11 856 93 0 16 chr1 10255583 10255712 -232408641 - FLAM_C SINE Alu -16 127 1 1976 118 30 3 chr1 10255722 10256026 -232408327 - AluSx SINE Alu 0 312 1 481 128 23 35 chr1 10256030 10256116 -232408237 - Alu SINE Alu -5 305 221 2629 152 79 0 chr1 10256130 10256637 -232407716 - LTR10A LTR ERV1 -62 547 1 25 35 0 52 chr1 10257543 10257601 -232406752 + GC_rich Low_complexity Low_complexity 1 55 0 189 0 0 0 chr1 10257714 10257735 -232406618 + (CGGGG)n Simple_repeat Simple_repeat 2 22 0 1831 110 41 10 chr1 10258445 10258737 -232405616 - AluSg SINE Alu -7 303 3 1850 50 50 0 chr1 10258747 10258985 -232405368 - AluY SINE Alu -2 309 60 1108 39 0 0 chr1 10258985 10259112 -232405241 - AluY SINE Alu -176 135 9 1844 148 0 0 chr1 10259120 10259410 -232404943 - AluSc SINE Alu -19 290 1 516 231 0 0 chr1 10259673 10259781 -232404572 - FLAM_A SINE Alu -15 127 20 2347 65 13 0 chr1 10259799 10260106 -232404247 - AluY SINE Alu 0 311 1 1925 130 3 7 chr1 10260117 10260417 -232403936 - AluSx SINE Alu -13 299 1 2173 86 7 0 chr1 10262132 10262424 -232401929 - AluY SINE Alu -17 294 1 1346 149 0 0 chr1 10262431 10262639 -232401714 - AluSg/x SINE Alu -20 292 85 935 167 61 5 chr1 10262642 10262840 -232401513 - AluSg/x SINE Alu -17 293 85 2075 79 18 0 chr1 10263294 10263620 -232400733 - AluSp SINE Alu 0 331 1 1834 144 17 0 chr1 10263622 10263913 -232400440 - AluSx SINE Alu -16 296 1 451 303 8 6 chr1 10264870 10265292 -232399061 + (CA)n Simple_repeat Simple_repeat 1 422 0 283 300 10 3 chr1 10265323 10265643 -232398710 + (CA)n Simple_repeat Simple_repeat 1 322 0 300 319 5 32 chr1 10265664 10265849 -232398504 + (CA)n Simple_repeat Simple_repeat 1 180 0 2057 114 0 10 chr1 10266793 10267090 -232397263 - AluSg SINE Alu -16 294 1 1201 171 15 0 chr1 10268422 10268627 -232395726 + AluJb SINE Alu 85 292 -20 819 115 23 8 chr1 10268628 10268758 -232395595 + AluY SINE Alu 1 132 -179 1417 152 24 110 chr1 10268772 10269107 -232395246 + AluSp SINE Alu 1 306 -7 1747 122 3 91 chr1 10269107 10269426 -232394927 + AluSx SINE Alu 1 292 -20 1961 112 10 17 chr1 10269801 10270097 -232394256 - AluY SINE Alu -17 294 1 835 116 16 16 chr1 10270101 10270230 -232394123 - AluSp SINE Alu -172 141 13 2269 75 7 0 chr1 10272826 10273121 -232391232 + AluY SINE Alu 2 298 -13 1687 143 4 8 chr1 10273614 10273872 -232390481 - AluSq SINE Alu -56 257 1 965 183 106 84 chr1 10273878 10274095 -232390258 - AluJb SINE Alu -20 292 66 2076 114 0 0 chr1 10274095 10274385 -232389968 + AluSg SINE Alu 1 290 -20 965 183 106 84 chr1 10274385 10274440 -232389913 - AluJb SINE Alu -246 66 14 22 35 0 0 chr1 10274451 10274480 -232389873 + AT_rich Low_complexity Low_complexity 1 29 0 1286 121 15 5 chr1 10274480 10274678 -232389675 - AluSq SINE Alu -113 200 1 1952 132 10 0 chr1 10276870 10277159 -232387194 + AluSc SINE Alu 1 292 -17 269 196 18 0 chr1 10277374 10277430 -232386923 - MLT1I LTR MaLR 0 409 353 1647 190 0 0 chr1 10277528 10277807 -232386546 + AluJb SINE Alu 9 287 -25 1856 147 10 0 chr1 10277827 10278126 -232386227 + AluSx SINE Alu 7 308 -4 1811 133 10 43 chr1 10278130 10278274 -232386079 + AluSx SINE Alu 1 131 -181 2200 102 0 3 chr1 10278274 10278578 -232385775 + AluSg SINE Alu 1 303 -7 1811 133 10 43 chr1 10278578 10278735 -232385618 + AluSx SINE Alu 131 292 -20 849 226 76 4 chr1 10278778 10279053 -232385300 - L1 LINE L1 -1903 4243 3949 934 92 0 0 chr1 10279113 10279233 -232385120 - AluSq/x SINE Alu -193 120 1 1498 230 72 0 chr1 10279248 10279666 -232384687 - L1 LINE L1 -2191 3955 3508 252 219 16 16 chr1 10279665 10279729 -232384624 - L1MC3 LINE L1 -13 7772 7709 * 250 203 47 31 chr1 10279792 10279856 -232384497 - L1MC3 LINE L1 -225 7560 7496 1206 163 80 73 chr1 10282825 10283125 -232381228 - AluJo SINE Alu -10 302 1 1963 111 28 7 chr1 10283201 10283490 -232380863 + AluSg SINE Alu 1 295 -15 1525 179 26 23 chr1 10283500 10283639 -232380714 + AluSx SINE Alu 1 138 -174 2099 111 3 3 chr1 10283639 10283936 -232380417 + AluSq SINE Alu 3 299 -14 1525 179 26 23 chr1 10283936 10284104 -232380249 + AluSx SINE Alu 138 309 -3 905 78 0 8 chr1 10284196 10284324 -232380029 - FLAM_C SINE Alu -16 127 1 506 81 0 40 chr1 10284326 10284400 -232379953 - Alu SINE Alu -19 292 222 968 118 51 0 chr1 10284400 10284577 -232379776 - LTR10A LTR ERV1 0 609 376 2536 62 0 0 chr1 10284579 10284887 -232379466 - AluY SINE Alu -3 308 1 180 0 0 0 chr1 10284896 10284916 -232379437 + (T)n Simple_repeat Simple_repeat 1 20 0 1703 108 13 0 chr1 10284916 10285148 -232379205 - AluSg SINE Alu -75 235 1 2277 91 3 3 chr1 10285201 10285510 -232378843 - AluSx SINE Alu -3 309 1 2107 102 3 13 chr1 10285510 10285814 -232378539 - AluSx SINE Alu -11 301 1 522 90 0 108 chr1 10285814 10285887 -232378466 - Harlequin LTR ERV1 -5187 1709 1650 2437 44 0 7 chr1 10285887 10286185 -232378168 + AluY SINE Alu 1 296 -15 522 90 0 108 chr1 10286185 10286222 -232378131 - Harlequin LTR ERV1 -5246 1650 1611 291 146 0 0 chr1 10286222 10286277 -232378076 + (TA)n Simple_repeat Simple_repeat 2 56 0 2285 49 3 14 chr1 10286288 10286576 -232377777 + AluY SINE Alu 1 285 -26 448 132 44 0 chr1 10287326 10287417 -232376936 - FRAM SINE Alu -52 124 30 2327 80 3 0 chr1 10290335 10290635 -232373718 + AluSx SINE Alu 1 301 -11 1797 98 132 0 chr1 10291527 10291793 -232372560 + AluY SINE Alu 1 301 0 266 136 0 0 chr1 10292510 10292554 -232371799 + Alu SINE Alu 1 44 -259 2017 115 0 55 chr1 10292554 10292884 -232371469 + AluSx SINE Alu 1 312 0 1165 96 12 0 chr1 10292885 10293051 -232371302 + AluSq SINE Alu 137 304 -9 2053 110 10 3 chr1 10294276 10294576 -232369777 + AluSg SINE Alu 1 302 -8 434 174 0 0 chr1 10294998 10295067 -232369286 + FLAM_A SINE Alu 8 76 -56 2299 84 7 0 chr1 10295239 10295548 -232368805 + AluY SINE Alu 1 311 0 1203 151 39 131 chr1 10295556 10295692 -232368661 + AluYb8 SINE Alu 1 148 -170 2283 87 3 3 chr1 10295692 10295991 -232368362 + AluY SINE Alu 1 299 -12 1203 151 39 131 chr1 10295991 10296191 -232368162 + AluYb8 SINE Alu 148 306 -12 2137 110 7 0 chr1 10298738 10299039 -232365314 + AluSx SINE Alu 1 303 -9 22 35 0 0 chr1 10299317 10299346 -232365007 + AT_rich Low_complexity Low_complexity 1 29 0 681 130 10 0 chr1 10299393 10299493 -232364860 + AluY SINE Alu 44 144 -167 2243 70 0 54 chr1 10299493 10299808 -232364545 + AluY SINE Alu 1 298 -13 1461 198 21 3 chr1 10301715 10302003 -232362350 + AluJo SINE Alu 1 293 -19 1930 89 0 124 chr1 10302013 10302150 -232362203 + AluSq SINE Alu 1 73 -230 1569 88 0 5 chr1 10302150 10302355 -232361998 + AluY SINE Alu 1 204 -107 1930 89 0 124 chr1 10302355 10302555 -232361798 + AluSq SINE Alu 73 296 -7 2156 106 0 0 chr1 10303130 10303443 -232360910 + AluSx SINE Alu 1 313 0 1886 142 0 14 chr1 10303511 10303806 -232360547 + AluSx SINE Alu 1 291 -21 2011 103 34 0 chr1 10303928 10304220 -232360133 + AluSx SINE Alu 1 302 -10 690 238 18 24 chr1 10304220 10304388 -232359965 + AluJb SINE Alu 137 303 -9 352 272 24 16 chr1 10305339 10305464 -232358889 + L1MB8 LINE L1 6041 6166 -12 1522 176 19 4 chr1 10305593 10305726 -232358627 - AluSq SINE Alu -47 266 137 1917 128 17 3 chr1 10305726 10306023 -232358330 - AluSp SINE Alu -11 302 2 1522 176 19 4 chr1 10306023 10306151 -232358202 - AluSq SINE Alu -176 137 1 945 201 183 0 chr1 10306197 10306426 -232357927 - AluJo SINE Alu -24 288 18 647 221 8 0 chr1 10306705 10306836 -232357517 + FLAM_C SINE Alu 2 133 0 216 292 104 42 chr1 10306868 10306964 -232357389 - MIR SINE MIR -5 257 156 2237 98 3 0 chr1 10307084 10307381 -232356972 - AluSg SINE Alu -12 298 1 2071 120 0 23 chr1 10309251 10309559 -232354794 + AluSg1 SINE Alu 1 301 -8 1952 104 0 38 chr1 10309570 10309859 -232354494 + AluSx SINE Alu 1 278 -34 195 42 0 0 chr1 10310386 10310410 -232353943 + (CACG)n Simple_repeat Simple_repeat 4 27 0 1925 50 0 114 chr1 10311058 10311357 -232352996 + AluY SINE Alu 1 265 -46 1283 156 4 39 chr1 10311977 10312208 -232352145 + AluSx SINE Alu 3 225 -87 205 175 0 0 chr1 10312399 10312439 -232351914 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr1 10313445 10313467 -232350886 + GC_rich Low_complexity Low_complexity 1 22 0 233 271 160 7 chr1 10314081 10314225 -232350128 + L2 LINE L2 2286 2451 -863 312 280 69 42 chr1 10316071 10316253 -232348100 + MIR SINE MIR 15 202 -60 1427 202 40 64 chr1 10317088 10317544 -232346809 - L1 LINE L1 -2192 3954 3510 292 169 31 15 chr1 10317545 10317610 -232346743 - L1MD3 LINE L1 -10 7985 7920 252 203 47 31 chr1 10317672 10317736 -232346617 - L1MC3 LINE L1 -225 7560 7496 750 170 7 30 chr1 10520166 10520301 -232144052 - THE1C LTR MaLR -243 132 1 462 231 112 35 chr1 10520301 10520466 -232143887 - MLT1I LTR MaLR -227 182 5 903 334 18 21 chr1 10521397 10521780 -232142573 - MLT1I LTR MaLR -1 408 27 521 261 30 18 chr1 10522573 10522738 -232141615 + L1M4c LINE L1 1223 1389 -4995 381 261 85 33 chr1 10522751 10522904 -232141449 + L1M4 LINE L1 1357 1517 -5025 2048 282 59 46 chr1 10522905 10524193 -232140160 + L2 LINE L2 1994 3312 -1 2270 109 0 0 chr1 10525516 10525810 -232138543 + AluY SINE Alu 1 294 -17 189 0 0 0 chr1 10525842 10525863 -232138490 + (A)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chr1 10526003 10526026 -232138327 + (A)n Simple_repeat Simple_repeat 1 23 0 858 337 14 7 chr1 10526221 10526518 -232137835 - MLT1K LTR MaLR -5 583 285 393 297 27 49 chr1 10526524 10526709 -232137644 - MLT1K LTR MaLR -406 182 2 297 377 0 0 chr1 10528011 10528157 -232136196 + L1MC4a LINE L1 5754 5899 -1909 478 241 166 0 chr1 10528239 10528384 -232135969 + MLT1J LTR MaLR 53 221 -290 180 244 22 0 chr1 10528487 10528532 -232135821 - MIR SINE MIR -107 155 110 395 304 152 17 chr1 10528587 10528883 -232135470 - LTR16C LTR ERVL -16 475 140 403 248 4 54 chr1 10529978 10530118 -232134235 + L1ME2 LINE L1 5687 5826 -336 1241 204 37 102 chr1 10530126 10530357 -232133996 - MLT1A2 LTR MaLR -8 366 168 2130 117 0 7 chr1 10530357 10530656 -232133697 - AluSx SINE Alu -15 297 1 1241 204 37 102 chr1 10530656 10530807 -232133546 - MLT1A2 LTR MaLR -206 168 9 1176 239 32 13 chr1 10530822 10531131 -232133222 + L1ME2 LINE L1 5841 6155 -9 216 174 0 43 chr1 10531220 10531276 -232133077 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2924 72 5 10 chr1 10531286 10531677 -232132676 + L1PA8 LINE L1 5782 6170 -2 2186 186 46 72 chr1 10532214 10532783 -232131570 - MLT2B3 LTR ERVL 0 554 1 215 357 135 0 chr1 10532851 10533036 -232131317 + MIR SINE MIR 37 246 -16 271 293 0 0 chr1 10533808 10533883 -232130470 - L2 LINE L2 -5 3308 3234 712 199 114 5 chr1 10534256 10534457 -232129896 - L2 LINE L2 -337 2977 2755 245 312 29 0 chr1 10534469 10534559 -232129794 + MIR SINE MIR 60 135 -73 189 171 0 0 chr1 10534565 10534600 -232129753 + (ATG)n Simple_repeat Simple_repeat 3 37 0 2395 103 50 8 chr1 10535445 10535804 -232128549 + THE1C LTR MaLR 2 375 0 280 280 9 28 chr1 10536706 10536813 -232127540 + (TA)n Simple_repeat Simple_repeat 2 106 0 189 0 0 0 chr1 10536814 10536835 -232127518 + (TG)n Simple_repeat Simple_repeat 2 22 0 571 311 11 6 chr1 10536926 10537106 -232127247 - MIR SINE MIR -21 241 61 269 302 23 0 chr1 10537339 10537425 -232126928 + L2 LINE L2 3183 3270 -2 421 291 127 12 chr1 10537827 10538071 -232126282 - L2 LINE L2 0 3313 3042 2447 115 8 21 chr1 10538176 10538558 -232125795 - L1PA12 LINE L1 -242 5926 5550 503 235 35 0 chr1 10538567 10538682 -232125671 + L2 LINE L2 3176 3294 -19 2234 88 0 24 chr1 10538976 10539291 -232125062 + AluSq SINE Alu 4 313 0 929 227 100 0 chr1 10540323 10540583 -232123770 + MER33 DNA MER1_type 9 294 -30 495 319 11 21 chr1 10540590 10540781 -232123572 - L2 LINE L2 -46 3267 3079 2248 113 3 0 chr1 10541179 10541481 -232122872 - AluSx SINE Alu -9 303 1 545 224 32 0 chr1 10541523 10541648 -232122705 - MER5A DNA MER1_type 0 189 61 990 229 76 8 chr1 10541659 10541921 -232122432 - MER33 DNA MER1_type -36 288 9 274 196 0 0 chr1 10542023 10542074 -232122279 - MER5A DNA MER1_type -138 51 1 358 296 58 17 chr1 10542079 10542251 -232122102 + HAL1 LINE L1 2282 2460 -47 22 70 0 0 chr1 10543402 10543445 -232120908 + AT_rich Low_complexity Low_complexity 1 43 0 620 217 112 7 chr1 10543485 10543637 -232120716 - MER58C DNA MER1_type -2 213 46 231 291 145 47 chr1 10543657 10543891 -232120462 - L1ME LINE L1 -335 5835 5579 319 301 26 18 chr1 10544149 10544262 -232120091 + MIR SINE MIR 22 135 -127 4032 68 2 2 chr1 10544363 10544876 -232119477 - L1PA10 LINE L1 0 6168 5656 785 251 84 42 chr1 10544977 10545500 -232118853 - L2 LINE L2 -2 3311 2748 2352 107 3 3 chr1 10545575 10545883 -232118470 + AluSx SINE Alu 3 310 -2 206 300 100 18 chr1 10545890 10546000 -232118353 - L2 LINE L2 -481 2833 2715 295 248 40 10 chr1 10546046 10546147 -232118206 - L2 LINE L2 -495 2819 2716 189 0 0 0 chr1 10546170 10546191 -232118162 + (CTGGGG)n Simple_repeat Simple_repeat 1 21 0 355 226 124 1 chr1 10546215 10546319 -232118034 - MLT1F LTR MaLR -250 292 189 260 199 20 27 chr1 10546320 10546466 -232117887 + (CAGAGA)n Simple_repeat Simple_repeat 4 148 0 2335 141 23 62 chr1 10546479 10546692 -232117661 + MSTB LTR MaLR 1 190 -236 2368 116 0 0 chr1 10546692 10546995 -232117358 - AluSx SINE Alu -9 303 1 2335 141 23 62 chr1 10546995 10547220 -232117133 + MSTB LTR MaLR 190 422 -4 3021 181 60 6 chr1 10547323 10548128 -232116225 - L1MB5 LINE L1 -222 5952 5112 186 238 155 48 chr1 10548245 10548329