222 307 13 13 chr1_random 62 137 -9155982 + L2 LINE L2 3186 3260 -12 337 279 20 41 chr1_random 157 304 -9155815 - MIR SINE MIR -58 204 61 1434 213 129 92 chr1_random 1972 2475 -9153644 + MLT1E2 LTR MaLR 18 548 -78 1588 207 3 3 chr1_random 2475 2765 -9153354 + AluJo SINE Alu 12 301 -11 1434 213 129 92 chr1_random 2765 2848 -9153271 + MLT1E2 LTR MaLR 548 626 0 1795 252 46 7 chr1_random 3706 4246 -9151873 + L1MD3 LINE L1 7404 7964 -31 301 345 0 18 chr1_random 4248 4361 -9151758 + MIR3 SINE MIR 64 174 -34 1427 179 12 98 chr1_random 4459 4653 -9151466 + MLT1A2 LTR MaLR 1 143 -231 456 35 0 0 chr1_random 4653 4711 -9151408 + (TC)n Simple_repeat Simple_repeat 2 59 0 1427 179 12 98 chr1_random 4711 4925 -9151194 + MLT1A2 LTR MaLR 143 374 0 1740 185 0 47 chr1_random 5654 5973 -9150146 + AluSx SINE Alu 1 304 -8 1655 140 47 84 chr1_random 6135 6257 -9149862 + AluSx SINE Alu 1 126 -186 9494 22 2 224 chr1_random 6257 8030 -9148089 + SVA Other Other 1 1378 -8 260 27 27 0 chr1_random 8034 8071 -9148048 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1655 140 47 84 chr1_random 8071 8264 -9147855 + AluSx SINE Alu 129 309 -3 492 18 0 0 chr1_random 8422 8479 -9147640 + (CA)n Simple_repeat Simple_repeat 1 57 0 300 241 44 133 chr1_random 8693 8823 -9147296 + L1MCa LINE L1 614 729 -5476 4327 142 52 65 chr1_random 8823 9737 -9146382 + MER4D LTR ERV1 1 903 0 300 241 44 133 chr1_random 9737 9764 -9146355 + L1MCa LINE L1 729 757 -5448 1727 168 33 23 chr1_random 9838 10141 -9145978 + AluJb SINE Alu 1 306 -6 1511 156 30 17 chr1_random 10467 10762 -9145357 + LTR2B LTR ERV1 192 490 0 511 236 32 38 chr1_random 10882 11039 -9145080 - LTR1B LTR ERV1 -328 498 343 488 245 121 12 chr1_random 11102 11293 -9144826 - LTR1 LTR ERV1 -564 221 42 3091 209 18 50 chr1_random 11444 12432 -9143687 + L1MCa LINE L1 -348 570 -5126 3116 146 12 4 chr1_random 12435 12943 -9143176 - MER41E LTR ERV1 0 512 1 3560 214 78 93 chr1_random 13024 14048 -9142071 + L1MCa LINE L1 577 1572 -4643 2091 125 3 0 chr1_random 14048 14335 -9141784 - AluSx SINE Alu -24 288 1 3560 214 78 93 chr1_random 14335 14791 -9141328 + L1MCa LINE L1 1572 2034 -4181 295 306 25 0 chr1_random 14790 14950 -9141169 + L1MCa LINE L1 1304 1467 -4929 * 341 213 55 79 chr1_random 14949 15113 -9141006 + L1MC5 LINE L1 7344 7503 -458 272 293 28 21 chr1_random 15346 15498 -9140621 + L1MCa LINE L1 1519 1710 -866 2286 106 0 13 chr1_random 15578 15890 -9140229 + AluSx SINE Alu 1 308 -4 23 0 0 0 chr1_random 16022 16045 -9140074 + AT_rich Low_complexity Low_complexity 1 23 0 645 219 16 27 chr1_random 16234 16417 -9139702 - L1MCa LINE L1 -4181 2245 2065 995 187 11 16 chr1_random 16419 16601 -9139518 - AluSx SINE Alu -127 185 5 314 286 228 5 chr1_random 16813 17400 -9138719 + L1MCa LINE L1 2185 2902 -3313 2179 108 0 3 chr1_random 17406 17702 -9138417 + AluSc SINE Alu 2 296 -13 24 0 0 0 chr1_random 17758 17782 -9138337 + AT_rich Low_complexity Low_complexity 1 24 0 344 244 0 6 chr1_random 18191 18367 -9137752 + (TGG)n Simple_repeat Simple_repeat 3 177 0 241 237 11 32 chr1_random 18591 18684 -9137435 - L1MB1 LINE L1 0 6237 6147 677 191 0 0 chr1_random 18806 18937 -9137182 - L1MB1 LINE L1 -213 6024 5894 207 255 21 0 chr1_random 20804 20851 -9135268 + MER5B DNA MER1_type 2 49 -129 210 105 0 0 chr1_random 20851 20889 -9135230 + (T)n Simple_repeat Simple_repeat 1 38 0 443 288 72 9 chr1_random 20890 21001 -9135118 + MER5B DNA MER1_type 55 172 -6 993 271 100 37 chr1_random 21003 21413 -9134706 - L2 LINE L2 0 3313 2878 2748 227 123 17 chr1_random 22006 23067 -9133052 - L1MB1 LINE L1 -1098 5117 3945 * 3081 256 18 5 chr1_random 23055 24287 -9131832 - L1MB1 LINE L1 -2974 3241 2035 753 40 30 0 chr1_random 24504 24605 -9131514 - MER41A LTR ERV1 -88 466 363 18516 52 1 0 chr1_random 24605 27709 -9128410 - L1PA5 LINE L1 0 6154 3041 190 300 0 0 chr1_random 27943 28023 -9128096 + GA-rich Low_complexity Low_complexity 2 81 0 1326 283 86 38 chr1_random 28027 28139 -9127980 + HAL1 LINE L1 1048 1153 -1354 2350 98 3 3 chr1_random 28139 28445 -9127674 + AluSc SINE Alu 1 306 -3 1326 283 86 38 chr1_random 28445 29159 -9126960 + HAL1 LINE L1 1153 1914 -593 238 219 31 16 chr1_random 29387 29490 -9126629 + GA-rich Low_complexity Low_complexity 1 104 0 341 311 68 28 chr1_random 30071 30322 -9125797 + L1ME4a LINE L1 5659 5919 -202 655 266 26 26 chr1_random 30365 30557 -9125562 + MIR SINE MIR 45 236 -26 38 22 0 0 chr1_random 31544 31589 -9124530 + AT_rich Low_complexity Low_complexity 1 45 0 200 289 0 0 chr1_random 32056 32101 -9124018 - L2 LINE L2 -15 3257 3213 195 100 0 0 chr1_random 32449 32479 -9123640 + (TG)n Simple_repeat Simple_repeat 2 31 0 366 310 61 1 chr1_random 32599 32732 -9123387 + MIR SINE MIR 36 174 -61 875 253 36 106 chr1_random 34557 34615 -9121504 + MER66A LTR ERV1 90 151 -327 2807 7 0 0 chr1_random 34615 34920 -9121199 + AluYa5 SINE Alu 1 305 -6 875 253 36 106 chr1_random 34920 35297 -9120822 + MER66A LTR ERV1 151 468 -10 1422 260 88 65 chr1_random 36508 37142 -9118977 + L2 LINE L2 289 937 -2377 673 292 75 42 chr1_random 37142 37474 -9118645 + L2 LINE L2 794 1136 -2178 4957 178 32 12 chr1_random 37493 38614 -9117505 + L1PB4 LINE L1 3378 4520 -1626 2431 152 54 5 chr1_random 38615 39023 -9117096 + MSTA LTR MaLR 1 428 0 5089 173 33 1 chr1_random 39023 39970 -9116149 + MSTA-int LTR MaLR 1 977 -674 317 106 0 0 chr1_random 39970 40017 -9116102 + MSTA LTR MaLR 380 426 -2 4112 196 21 40 chr1_random 40019 41752 -9114367 + L1PB4 LINE L1 4517 6154 -2 895 287 208 12 chr1_random 41759 42191 -9113928 + L2 LINE L2 1169 1685 -1629 1423 317 93 5 chr1_random 42205 42750 -9113369 + L2 LINE L2 2436 3027 -286 2081 115 25 3 chr1_random 42904 43190 -9112929 - AluSg SINE Alu -18 292 1 5770 145 26 19 chr1_random 43203 44724 -9111395 - L1MA4 LINE L1 -2 6298 4762 1561 186 62 3 chr1_random 44724 45014 -9111105 - AluJo SINE Alu -5 307 1 5770 145 26 19 chr1_random 45014 45296 -9110823 - L1MA4 LINE L1 -1538 4762 4484 1154 101 85 58 chr1_random 45296 45566 -9110553 - AluSg/x SINE Alu 0 364 90 1403 165 73 76 chr1_random 45671 46040 -9110079 + THE1C LTR MaLR 8 375 0 1106 253 93 40 chr1_random 46097 46493 -9109626 + L3 LINE CR1 1155 1571 -6 293 242 74 67 chr1_random 46723 46872 -9109247 + MIR3 SINE MIR 38 187 -21 23 0 0 0 chr1_random 47161 47184 -9108935 + AT_rich Low_complexity Low_complexity 1 23 0 697 296 57 14 chr1_random 47381 47932 -9108187 - L1ME2 LINE L1 -279 5868 5276 776 290 9 0 chr1_random 47959 48190 -9107929 + MIR SINE MIR 30 262 0 1337 260 90 56 chr1_random 48395 48533 -9107586 - L1ME2 LINE L1 -1374 4755 4623 1904 144 0 11 chr1_random 48533 48818 -9107301 + AluSx SINE Alu 1 308 0 186 0 0 39 chr1_random 48818 48844 -9107275 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 1337 260 90 56 chr1_random 48844 49785 -9106334 - L1ME2 LINE L1 -1506 4623 3639 377 334 23 69 chr1_random 50008 50355 -9105764 - L1ME2 LINE L1 -3340 2789 2459 2344 121 26 6 chr1_random 50364 50712 -9105407 + THE1B LTR MaLR 1 355 -9 180 0 0 0 chr1_random 50718 50738 -9105381 + (TA)n Simple_repeat Simple_repeat 1 20 0 1592 291 9 12 chr1_random 50785 51211 -9104908 - LTR16A LTR ERVL 0 450 26 377 286 23 36 chr1_random 51319 51492 -9104627 - HERV16 LTR ERVL -115 4881 4729 255 280 17 42 chr1_random 51632 51750 -9104369 - HERV16 LTR ERVL -690 5074 4960 * 1771 291 72 45 chr1_random 51748 53004 -9103115 - HERV16 LTR ERVL -1922 3074 1752 498 61 30 0 chr1_random 53117 53183 -9102936 + MSTD LTR MaLR 1 68 -328 1001 185 20 10 chr1_random 53261 53456 -9102663 + MSTD LTR MaLR 1 197 -199 2358 100 3 0 chr1_random 53496 53797 -9102322 - AluSx SINE Alu -10 302 1 242 263 8 59 chr1_random 54095 54213 -9101906 - L1ME2 LINE L1 -5936 183 72 2559 65 0 3 chr1_random 54213 54520 -9101599 - AluY SINE Alu -5 306 1 239 203 109 16 chr1_random 54669 54733 -9101386 - L2 LINE L2 0 3272 3203 2710 128 2 33 chr1_random 55855 55975 -9100144 + L1PA16 LINE L1 5752 5874 -292 2256 117 0 0 chr1_random 55975 56275 -9099844 - AluSc SINE Alu -9 300 1 2710 128 2 33 chr1_random 56275 56582 -9099537 + L1PA16 LINE L1 5874 6166 0 578 284 129 9 chr1_random 56633 56865 -9099254 - MIR SINE MIR 0 262 3 192 313 12 48 chr1_random 57470 57553 -9098566 - L2 LINE L2 -5 3267 3188 557 171 11 0 chr1_random 57584 57672 -9098447 + FLAM_A SINE Alu 36 124 -18 22831 86 8 3 chr1_random 57678 60736 -9095383 + L1P LINE L1 1 3073 -3073 1528 154 0 0 chr1_random 60836 61083 -9095036 - L1 LINE L1 -1901 4245 3999 656 288 31 18 chr1_random 61088 61317 -9094802 + L2 LINE L2 3077 3308 -5 2347 108 13 0 chr1_random 62105 62412 -9093707 + AluSx SINE Alu 1 311 -1 1187 307 55 49 chr1_random 62671 63437 -9092682 - L2 LINE L2 -94 3219 2450 947 211 0 0 chr1_random 63438 63604 -9092515 - FRAM SINE Alu -13 163 1 558 250 151 6 chr1_random 63605 63777 -9092342 - L2 LINE L2 -858 2456 2260 351 331 66 13 chr1_random 64660 64811 -9091308 - LTR67 LTR ERVL -41 516 358 311 266 80 80 chr1_random 64926 65125 -9090994 - LTR67 LTR ERVL -356 201 3 2201 103 0 0 chr1_random 66008 66289 -9089830 + AluSq SINE Alu 1 281 -32 248 343 112 15 chr1_random 67570 67704 -9088415 - MIR SINE MIR -29 233 87 600 304 67 9 chr1_random 68352 68694 -9087425 - L1ME4a LINE L1 -142 5979 5618 1671 183 3 71 chr1_random 68824 69191 -9086928 + MLT1A2 LTR MaLR 29 370 -4 266 272 89 118 chr1_random 69472 69780 -9086339 - L2 LINE L2 -2 3311 3019 1609 184 24 3 chr1_random 69780 69901 -9086218 + AluJo SINE Alu 1 118 -194 191 36 36 0 chr1_random 69901 69929 -9086190 + (CATA)n Simple_repeat Simple_repeat 4 32 0 1609 184 24 3 chr1_random 69929 70101 -9086018 + AluJo SINE Alu 118 300 -12 266 272 89 118 chr1_random 70101 70241 -9085878 - L2 LINE L2 -294 3019 2876 1591 250 101 82 chr1_random 71742 72326 -9083793 + MLT1G LTR MaLR 1 590 0 273 209 75 0 chr1_random 73568 73635 -9082484 + L1MC4 LINE L1 5254 5325 -2717 1653 176 10 16 chr1_random 74658 74965 -9081154 + AluJb SINE Alu 1 305 -7 4345 247 62 40 chr1_random 74971 75494 -9080625 + L1MC4 LINE L1 5328 5838 -2204 2251 93 0 23 chr1_random 75494 75794 -9080325 - AluSx SINE Alu -6 306 14 4345 247 62 40 chr1_random 75794 76828 -9079291 + L1MC4 LINE L1 5838 6919 -1123 2536 58 0 7 chr1_random 76862 77172 -9078947 + AluY SINE Alu 1 308 -3 1582 227 30 30 chr1_random 77199 77426 -9078693 + L1MC4a LINE L1 7142 7371 -437 2401 89 0 0 chr1_random 77426 77730 -9078389 + AluY SINE Alu 1 304 -7 1582 227 30 30 chr1_random 77730 77943 -9078176 + L1MC4a LINE L1 7370 7582 -226 21 0 0 0 chr1_random 77994 78015 -9078104 + AT_rich Low_complexity Low_complexity 1 21 0 267 176 0 26 chr1_random 78056 78120 -9077999 + MLT2F LTR ERVL 338 663 0 517 193 28 9 chr1_random 79633 79742 -9076377 + MLT1F1 LTR MaLR 453 563 -4 2119 115 7 7 chr1_random 80142 80438 -9075681 + AluSq SINE Alu 1 296 -17 189 332 122 34 chr1_random 80830 81068 -9075051 + L2 LINE L2 2709 2967 -347 21 36 0 0 chr1_random 81229 81257 -9074862 + AT_rich Low_complexity Low_complexity 1 28 0 315 261 37 4 chr1_random 81261 81399 -9074720 - MIR SINE MIR -27 235 37 425 281 186 0 chr1_random 81702 81869 -9074250 + MIR SINE MIR 48 245 -17 2345 94 0 22 chr1_random 83748 84068 -9072051 + AluSq SINE Alu 1 313 0 2517 65 3 7 chr1_random 84180 84490 -9071629 + AluY SINE Alu 1 309 -2 215 217 0 0 chr1_random 84521 84567 -9071552 + MIR SINE MIR 102 147 -115 * 440 250 58 0 chr1_random 84565 84685 -9071434 - L2 LINE L2 0 3313 3187 280 260 198 0 chr1_random 84682 84778 -9071341 + MIR SINE MIR 147 261 -1 * 383 252 42 28 chr1_random 85852 85995 -9070124 + L1ME4a LINE L1 5789 5933 -188 2497 58 10 7 chr1_random 86267 86577 -9069542 - AluY SINE Alu 0 311 1 297 374 76 17 chr1_random 86688 86926 -9069193 - L2 LINE L2 -609 2705 2454 1658 144 0 30 chr1_random 86928 87191 -9068928 + L1PA16 LINE L1 5912 6166 0 1138 194 135 11 chr1_random 87386 87773 -9068346 - MLT1F1 LTR MaLR -112 430 3 416 287 146 27 chr1_random 87776 88104 -9068015 - L2 LINE L2 -939 2375 2009 3880 220 94 43 chr1_random 88218 88959 -9067160 - L1MC4a LINE L1 0 7808 7107 2059 98 4 0 chr1_random 88959 89224 -9066895 + AluY SINE Alu 40 305 -6 3880 220 94 43 chr1_random 89224 90529 -9065590 - L1MC4a LINE L1 -701 7107 5823 359 209 132 0 chr1_random 90590 90681 -9065438 - L1MC4a LINE L1 -1941 5867 5765 990 268 126 37 chr1_random 90841 91300 -9064819 - L1MC4a LINE L1 -2054 5754 5255 2493 132 5 27 chr1_random 91418 91790 -9064329 + THE1B LTR MaLR 1 364 0 12101 104 19 0 chr1_random 91793 93341 -9062778 + THE1B-int LTR MaLR 4 1580 0 2521 129 8 27 chr1_random 93341 93712 -9062407 + THE1B LTR MaLR 1 364 0 283 276 13 13 chr1_random 94234 94310 -9061809 - L2 LINE L2 -44 3228 3153 365 289 39 0 chr1_random 95149 95253 -9060866 + MIR3 SINE MIR 70 177 -31 25 0 0 0 chr1_random 96125 96150 -9059969 + AT_rich Low_complexity Low_complexity 1 25 0 2820 111 14 3 chr1_random 96705 97076 -9059043 + THE1C LTR MaLR 1 375 0 610 302 126 18 chr1_random 97224 97565 -9058554 - L3 LINE CR1 -1 1576 1199 679 275 122 37 chr1_random 97788 98166 -9057953 - MLT1L LTR MaLR -20 595 186 1439 195 2 146 chr1_random 98266 98692 -9057427 - MLT1A1 LTR MaLR 0 365 1 2117 127 3 7 chr1_random 98803 99103 -9057016 - AluSx SINE Alu -13 299 1 384 313 87 10 chr1_random 99412 99620 -9056499 + LTR33A LTR ERVL 300 523 0 2097 118 3 3 chr1_random 100062 100359 -9055760 - AluSx SINE Alu -15 297 1 2285 133 39 30 chr1_random 100803 101164 -9054955 + THE1B LTR MaLR 1 364 0 39 38 0 0 chr1_random 101395 101448 -9054671 + AT_rich Low_complexity Low_complexity 1 53 0 1855 184 0 3 chr1_random 101450 101760 -9054359 + AluJo SINE Alu 4 312 0 773 310 111 13 chr1_random 103524 104034 -9052085 - L2 LINE L2 -1 3312 2748 304 234 47 37 chr1_random 104105 104212 -9051907 + MIR SINE MIR 114 221 -41 339 295 0 1 chr1_random 104574 104670 -9051449 - MIR SINE MIR -76 132 38 182 286 0 14 chr1_random 104726 104796 -9051323 + MIR SINE MIR 144 212 -50 492 341 150 16 chr1_random 105199 105586 -9050533 - L2 LINE L2 -7 3265 2827 2668 122 16 64 chr1_random 106062 106333 -9049786 - MSTA LTR MaLR 0 428 186 2262 68 10 17 chr1_random 106333 106627 -9049492 - AluY SINE Alu -19 292 1 2668 122 16 64 chr1_random 106627 106805 -9049314 - MSTA LTR MaLR -242 186 1 5059 159 29 38 chr1_random 106812 107746 -9048373 - MSTA-int LTR MaLR -8 1643 718 348 344 53 0 chr1_random 107746 107877 -9048242 + MIR SINE MIR 61 198 -64 868 264 55 5 chr1_random 107901 108121 -9047998 - MIR SINE MIR -27 235 5 1865 188 30 45 chr1_random 110569 111061 -9045058 - MER74A LTR ERVL -1 557 56 252 100 0 0 chr1_random 111308 111348 -9044771 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 0 0 0 chr1_random 111634 111658 -9044461 + AT_rich Low_complexity Low_complexity 1 24 0 2403 69 0 50 chr1_random 112393 112712 -9043407 - AluY SINE Alu -8 303 1 233 275 25 25 chr1_random 112773 112853 -9043266 + MIR SINE MIR 48 127 -81 207 94 0 0 chr1_random 113947 113959 -9042160 + (A)n Simple_repeat Simple_repeat 1 12 -20 2458 42 0 7 chr1_random 113959 114248 -9041871 + L1PA5 LINE L1 5868 6154 0 207 94 0 0 chr1_random 114248 114267 -9041852 + (A)n Simple_repeat Simple_repeat 11 32 0 197 257 0 0 chr1_random 114320 114355 -9041764 + L2 LINE L2 3208 3242 -30 956 267 72 49 chr1_random 114405 114753 -9041366 + MLT1I LTR MaLR 54 409 0 413 258 93 57 chr1_random 114753 114947 -9041172 - MLT1J1 LTR MaLR -18 428 228 365 235 133 0 chr1_random 114971 115069 -9041050 - MLT1J2 LTR MaLR -339 111 1 32 67 0 0 chr1_random 115514 115574 -9040545 + AT_rich Low_complexity Low_complexity 1 60 0 194 331 24 57 chr1_random 115695 115819 -9040300 - L2 LINE L2 -214 3058 2939 250 254 0 15 chr1_random 117438 117505 -9038614 - L2 LINE L2 -5 3308 3243 1802 154 50 17 chr1_random 118529 118827 -9037292 - AluJo SINE Alu -4 308 1 392 245 59 45 chr1_random 119170 119313 -9036806 - MIR SINE MIR -67 141 8 630 279 143 14 chr1_random 121182 121462 -9034657 + MER102b DNA MER1_type 17 332 -9 500 326 61 58 chr1_random 121928 122222 -9033897 + L2 LINE L2 3011 3305 -8 20979 185 50 28 chr1_random 122223 125636 -9030483 + L1PA13 LINE L1 12 3347 -4254 2275 125 0 0 chr1_random 125636 125941 -9030178 - AluSx SINE Alu -7 305 1 20979 185 50 28 chr1_random 125941 127239 -9028880 + L1PA13 LINE L1 3347 4614 -2987 2095 126 7 0 chr1_random 127239 127525 -9028594 + AluSg SINE Alu 1 288 -22 20979 185 50 28 chr1_random 127525 130451 -9025668 + L1PA13 LINE L1 4614 7596 -5 1466 181 100 4 chr1_random 130696 130979 -9025140 + AluJo SINE Alu 1 308 0 202 162 27 0 chr1_random 133829 133866 -9022253 + (TA)n Simple_repeat Simple_repeat 2 39 0 203 175 18 35 chr1_random 134053 134110 -9022009 + (TA)n Simple_repeat Simple_repeat 2 57 0 286 225 117 96 chr1_random 134892 135132 -9020987 - MLT1J LTR MaLR -266 245 1 216 0 0 0 chr1_random 135673 135697 -9020422 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 375 323 95 0 chr1_random 137033 137191 -9018928 + MIR3 SINE MIR 22 194 -14 272 348 72 17 chr1_random 137975 138156 -9017963 + MIR3 SINE MIR 16 206 -2 448 260 24 24 chr1_random 138378 138505 -9017614 + L2 LINE L2 1884 2010 -1304 844 318 113 34 chr1_random 138522 139174 -9016945 + L2 LINE L2 2148 2851 -463 2416 140 41 61 chr1_random 139382 139569 -9016550 - Tigger2a DNA MER2_type -2274 434 245 2056 148 0 3 chr1_random 139569 139867 -9016252 - AluSx SINE Alu -15 297 1 2416 140 41 61 chr1_random 139867 140122 -9015997 - Tigger2a DNA MER2_type -2463 245 1 706 285 159 28 chr1_random 141649 142039 -9014080 - MLT1J1 LTR MaLR -5 441 1 298 239 221 0 chr1_random 142307 142420 -9013699 - MIR SINE MIR 0 262 125 494 242 11 42 chr1_random 142522 142669 -9013450 - MIR SINE MIR -67 141 9 1588 207 49 30 chr1_random 142723 143090 -9013029 - MLT1A2 LTR MaLR 0 374 1 375 316 45 19 chr1_random 144747 144902 -9011217 - MER91A DNA MER1_type 0 196 38 2482 65 0 0 chr1_random 145598 145890 -9010229 - AluY SINE Alu -19 292 1 334 300 122 39 chr1_random 145982 146162 -9009957 + MIR SINE MIR 52 246 -16 431 269 71 56 chr1_random 146329 146526 -9009593 - LTR67 LTR ERVL -7 550 351 605 262 172 50 chr1_random 146876 147365 -9008754 + L1ME LINE L1 4386 4814 -1332 1121 215 42 0 chr1_random 147365 147579 -9008540 - MER58A DNA MER1_type 0 224 2 605 262 172 50 chr1_random 147579 147996 -9008123 + L1ME LINE L1 4814 5403 -743 2111 116 3 0 chr1_random 148016 148325 -9007794 + AluSx SINE Alu 1 310 0 387 0 0 0 chr1_random 148352 148395 -9007724 + (TC)n Simple_repeat Simple_repeat 2 44 0 294 29 0 0 chr1_random 148394 148429 -9007690 + (TA)n Simple_repeat Simple_repeat 1 35 0 * 279 327 87 28 chr1_random 148444 148698 -9007421 + L1ME LINE L1 5479 5747 -374 21 71 0 0 chr1_random 148826 148868 -9007251 + AT_rich Low_complexity Low_complexity 1 42 0 1843 191 85 38 chr1_random 149119 149565 -9006554 + MLT1C LTR MaLR 1 467 0 321 236 66 28 chr1_random 149813 149919 -9006200 + L3 LINE CR1 1438 1547 -30 293 336 9 9 chr1_random 149948 150055 -9006064 + MIR SINE MIR 1 107 -155 2334 68 0 0 chr1_random 150082 150404 -9005715 - AluY SINE Alu 0 322 1 248 202 32 106 chr1_random 150424 150518 -9005601 - LTR67 LTR ERVL -8 549 463 270 266 16 0 chr1_random 150658 150722 -9005397 - LTR67 LTR ERVL -385 172 108 886 240 61 18 chr1_random 150725 150954 -9005165 - MIR SINE MIR 0 262 24 260 221 0 125 chr1_random 150985 151089 -9005030 - LTR67 LTR ERVL -451 106 16 2433 97 0 0 chr1_random 151173 151483 -9004636 + AluSx SINE Alu 1 310 -2 191 240 13 53 chr1_random 151483 151558 -9004561 + L2 LINE L2 3198 3269 -3 477 209 46 85 chr1_random 151635 151788 -9004331 + MIR3 SINE MIR 47 193 -15 225 0 0 0 chr1_random 152027 152052 -9004067 + (CA)n Simple_repeat Simple_repeat 1 25 0 341 251 62 24 chr1_random 152648 152804 -9003315 - MIR SINE MIR -56 152 16 647 306 155 61 chr1_random 153040 154412 -9001707 + L2 LINE L2 1368 2942 -330 780 245 153 34 chr1_random 154412 154792 -9001327 - MSTC LTR MaLR -1 427 3 647 306 155 61 chr1_random 154792 155144 -9000975 + L2 LINE L2 2942 3259 -13 2590 145 13 63 chr1_random 156285 156654 -8999465 - MSTC LTR MaLR 0 428 42 2090 112 3 17 chr1_random 156654 156948 -8999171 + AluSq SINE Alu 6 295 -18 324 0 0 0 chr1_random 156948 156984 -8999135 + (CA)n Simple_repeat Simple_repeat 2 37 0 2590 145 13 63 chr1_random 156984 157060 -8999059 - MSTC LTR MaLR -384 44 4 358 282 82 7 chr1_random 157131 157269 -8998850 + MIR SINE MIR 36 182 -66 2061 130 0 7 chr1_random 157602 157894 -8998225 + AluSg SINE Alu 1 290 -20 30 0 0 0 chr1_random 157935 157965 -8998154 + AT_rich Low_complexity Low_complexity 1 30 0 270 0 0 0 chr1_random 158024 158054 -8998065 + (TA)n Simple_repeat Simple_repeat 2 31 0 1454 163 7 66 chr1_random 158432 158733 -8997386 - AluJo SINE Alu -19 293 11 1867 304 46 39 chr1_random 160314 160408 -8995711 + L1ME1 LINE L1 34 126 -6270 504 48 0 0 chr1_random 160408 160471 -8995648 + (CA)n Simple_repeat Simple_repeat 2 64 0 2403 96 3 0 chr1_random 160479 160791 -8995328 + AluSp SINE Alu 1 313 0 1867 304 46 39 chr1_random 160791 161664 -8994455 + L1ME1 LINE L1 132 1020 -5376 378 61 0 0 chr1_random 161664 161713 -8994406 + (TG)n Simple_repeat Simple_repeat 2 50 0 1867 304 46 39 chr1_random 161713 161735 -8994384 + L1ME1 LINE L1 1020 1040 -5356 210 118 0 0 chr1_random 161789 161823 -8994296 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1200 255 36 9 chr1_random 161895 162228 -8993891 - L1ME1 LINE L1 -45 6121 5780 * 3342 271 63 22 chr1_random 162221 162616 -8993503 + L1ME1 LINE L1 1033 1410 -4805 2461 84 0 7 chr1_random 162616 162925 -8993194 + AluY SINE Alu 1 307 -4 3342 271 63 22 chr1_random 162925 164750 -8991369 + L1ME1 LINE L1 1410 3307 -2908 350 206 103 66 chr1_random 164760 164896 -8991223 + MER33 DNA MER1_type 6 146 -178 1537 223 53 65 chr1_random 164897 165541 -8990578 + L1ME1 LINE L1 5135 5765 -470 2014 213 52 39 chr1_random 165551 166107 -8990012 - MER90 LTR ERV1 -7 607 3 458 123 0 0 chr1_random 166114 166179 -8989940 + L1ME LINE L1 5718 5782 -384 540 228 22 0 chr1_random 166182 166318 -8989801 + L1ME1 LINE L1 6091 6229 -6 207 281 52 62 chr1_random 166666 166762 -8989357 + MIR3 SINE MIR 93 187 -21 1556 280 83 50 chr1_random 167117 167764 -8988355 + MER115 DNA AcHobo 25 693 0 2125 133 0 7 chr1_random 169629 169937 -8986182 + AluSx SINE Alu 1 306 -6 648 280 57 0 chr1_random 169975 170168 -8985951 + MIR SINE MIR 59 262 0 186 103 0 0 chr1_random 172510 172539 -8983580 + (CAT)n Simple_repeat Simple_repeat 2 30 0 182 317 0 0 chr1_random 172564 172605 -8983514 - MIR SINE MIR -186 76 36 263 203 16 16 chr1_random 172742 172806 -8983313 + L3b LINE CR1 1323 1386 -197 231 222 0 0 chr1_random 173132 173177 -8982942 + MER117 DNA MER1_type 40 84 -113 415 219 47 27 chr1_random 173341 173473 -8982646 + MIR SINE MIR 2 141 -67 242 356 107 34 chr1_random 173796 174029 -8982090 + L2 LINE L2 2809 3058 -214 2108 111 0 56 chr1_random 174200 174524 -8981595 - AluSx SINE Alu -6 306 1 185 111 37 93 chr1_random 174545 174599 -8981520 + L2 LINE L2 3249 3299 -14 203 267 0 0 chr1_random 175142 175187 -8980932 + A-rich Low_complexity Low_complexity 2 46 0 319 209 21 90 chr1_random 177201 177346 -8978773 - MIR SINE MIR -46 216 90 213 119 0 0 chr1_random 177837 177879 -8978240 + (A)n Simple_repeat Simple_repeat 1 42 0 215 325 38 25 chr1_random 177884 177964 -8978155 + MIR SINE MIR 106 186 -76 225 167 0 42 chr1_random 178056 178104 -8978015 + L1MC4 LINE L1 6648 6693 -1349 277 261 0 15 chr1_random 178680 178745 -8977374 + CT-rich Low_complexity Low_complexity 3 66 0 589 120 22 0 chr1_random 179937 179965 -8976154 + L1MA6 LINE L1 5838 5864 -313 2303 168 66 52 chr1_random 179965 180448 -8975671 - LTR2B LTR ERV1 0 490 1 589 120 22 0 chr1_random 180448 180519 -8975600 + L1MA6 LINE L1 5864 5949 -228 321 279 106 29 chr1_random 180519 180623 -8975496 + MER34 LTR ERV1 1 112 -430 * 540 281 60 10 chr1_random 180591 180790 -8975329 + LTR48B LTR ERV1 123 331 -313 1676 200 10 3 chr1_random 180811 181116 -8975003 - AluJo SINE Alu -5 307 1 229 267 78 22 chr1_random 181116 181206 -8974913 + LTR48 LTR ERV1 526 620 -167 643 175 0 0 chr1_random 181280 181383 -8974736 - Tigger7 DNA MER2_type -3 2584 2482 1193 200 64 0 chr1_random 181384 181604 -8974515 - Tigger7 DNA MER2_type -2253 234 1 248 134 0 158 chr1_random 181604 181684 -8974435 + LTR48 LTR ERV1 696 762 -25 496 160 66 0 chr1_random 181843 181949 -8974170 + L1MA8 LINE L1 6179 6291 0 4507 193 36 22 chr1_random 182692 183542 -8972577 + MER21B LTR ERV1 1 862 -1 921 192 14 18 chr1_random 183720 184026 -8972093 + MSTD LTR MaLR 1 396 0 215 333 32 0 chr1_random 184170 184233 -8971886 - L2 LINE L2 -64 3208 3144 281 304 4 0 chr1_random 184903 184992 -8971127 + MIR SINE MIR 49 139 -69 238 364 24 15 chr1_random 186681 186794 -8969325 + MIR SINE MIR 2 116 -92 246 62 0 0 chr1_random 186907 186939 -8969180 + (T)n Simple_repeat Simple_repeat 1 32 0 280 316 77 48 chr1_random 187095 187263 -8968856 - MIR3 SINE MIR -7 201 29 339 253 198 0 chr1_random 187399 187490 -8968629 + MER81 DNA DNA 3 111 -3 216 0 0 0 chr1_random 188273 188297 -8967822 + (CA)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr1_random 188483 188516 -8967603 + AT_rich Low_complexity Low_complexity 1 33 0 421 183 19 29 chr1_random 188838 188942 -8967177 - L1MC4a LINE L1 -334 7474 7372 2302 107 0 0 chr1_random 189149 189448 -8966671 - AluSx SINE Alu -13 299 1 637 261 58 79 chr1_random 189524 189941 -8966178 - L1MCc LINE L1 -5956 467 60 1932 237 45 19 chr1_random 191397 191925 -8964194 - L1MC4 LINE L1 -675 7367 6826 1193 183 52 8 chr1_random 191925 192177 -8963942 + AluJo SINE Alu 44 306 -6 1049 229 47 83 chr1_random 192203 192511 -8963608 - L1MC4 LINE L1 -1212 6830 6537 1636 196 3 3 chr1_random 192511 192807 -8963312 - AluJb SINE Alu -16 296 1 1049 229 47 83 chr1_random 192807 192883 -8963236 - L1MC4 LINE L1 -1505 6537 6460 887 290 172 23 chr1_random 193047 193826 -8962293 - L1MEc LINE L1 -4498 1763 869 256 204 0 0 chr1_random 193840 193894 -8962225 - L1MEc LINE L1 -5299 771 718 672 241 21 37 chr1_random 244187 244378 -8911741 + MIR3 SINE MIR 15 202 -6 524 292 60 28 chr1_random 244896 245112 -8911007 + MIR SINE MIR 9 231 -31 2135 120 0 17 chr1_random 245202 245503 -8910616 - AluSg SINE Alu -14 296 1 180 152 0 0 chr1_random 247454 247487 -8908632 + (TG)n Simple_repeat Simple_repeat 2 34 0 226 286 0 0 chr1_random 247490 247546 -8908573 + GA-rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr1_random 247735 247759 -8908360 + (A)n Simple_repeat Simple_repeat 1 24 0 446 283 167 0 chr1_random 248858 248996 -8907123 + MER5A DNA MER1_type 11 171 -18 229 341 37 0 chr1_random 249988 250070 -8906049 - L2 LINE L2 -4 3268 3184 201 333 15 68 chr1_random 250089 250221 -8905898 + MIR SINE MIR 2 126 -136 2226 106 3 7 chr1_random 252729 253032 -8903087 + AluSg1 SINE Alu 1 302 -7 325 237 35 53 chr1_random 253080 253194 -8902925 - MLT1F LTR MaLR -430 112 1 1548 258 9 97 chr1_random 253380 253709 -8902410 - AluY SINE Alu -11 300 1 254 148 19 0 chr1_random 254554 254608 -8901511 + (TG)n Simple_repeat Simple_repeat 1 55 0 2167 130 0 0 chr1_random 255155 255462 -8900657 + AluSq SINE Alu 1 307 -6 967 283 90 24 chr1_random 257482 258048 -8898071 - MLT2F LTR ERVL -2 661 1 185 219 0 0 chr1_random 258269 258310 -8897809 + L2 LINE L2 1264 1304 -2010 791 286 177 8 chr1_random 258310 258705 -8897414 + L2 LINE L2 1265 1726 -1588 634 236 67 47 chr1_random 258729 258983 -8897136 - L1MC5 LINE L1 -516 7445 7187 1298 117 19 51 chr1_random 259037 259251 -8896868 - AluSg/x SINE Alu -14 298 92 464 152 0 0 chr1_random 259351 259417 -8896702 - AluS SINE Alu -246 67 2 3025 290 66 42 chr1_random 259673 260344 -8895775 + L2 LINE L2 1749 2402 -911 2553 55 0 3 chr1_random 260344 260651 -8895468 + AluY SINE Alu 1 306 -5 3025 290 66 42 chr1_random 260651 261509 -8894610 + L2 LINE L2 2402 3311 -2 486 285 101 22 chr1_random 264037 264216 -8891903 + MIR SINE MIR 3 195 -67 1060 199 11 64 chr1_random 264591 264858 -8891261 - MIR SINE MIR -5 257 5 449 149 138 0 chr1_random 265393 265480 -8890639 - L1MB7 LINE L1 -7 6177 6079 452 225 38 2 chr1_random 265480 265587 -8890532 + MER39 LTR ERV1 4 114 -428 1351 234 66 53 chr1_random 265587 265901 -8890218 + MER39 LTR ERV1 216 422 -163 2240 102 7 7 chr1_random 265901 266196 -8889923 + AluSx SINE Alu 2 296 -16 1351 234 66 53 chr1_random 266196 266363 -8889756 + MER39 LTR ERV1 422 585 0 1305 199 35 0 chr1_random 266364 266620 -8889499 - L1MB7 LINE L1 -103 6081 5817 2037 153 0 13 chr1_random 266634 266948 -8889171 - AluSx SINE Alu -2 310 1 31 0 0 0 chr1_random 266974 267005 -8889114 + AT_rich Low_complexity Low_complexity 1 31 0 2595 53 0 3 chr1_random 267014 267317 -8888802 + AluY SINE Alu 1 302 -9 22 0 0 0 chr1_random 267617 267639 -8888480 + AT_rich Low_complexity Low_complexity 1 22 0 253 234 16 31 chr1_random 267803 267867 -8888252 + L2 LINE L2 3249 3311 -2 255 308 212 25 chr1_random 268092 268290 -8887829 - MIR SINE MIR -11 251 17 397 303 19 25 chr1_random 268383 268545 -8887574 + L2 LINE L2 2023 2183 -1131 496 123 0 0 chr1_random 268653 268718 -8887401 - AluS SINE Alu -247 66 2 365 277 32 0 chr1_random 268813 268907 -8887212 + MIR3 SINE MIR 71 167 -41 642 60 0 0 chr1_random 269184 269267 -8886852 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1211 149 0 0 chr1_random 269267 269442 -8886677 - L1PB3 LINE L1 -9 6145 5971 264 338 0 0 chr1_random 269593 269670 -8886449 + L2 LINE L2 3236 3312 -1 212 179 0 0 chr1_random 269845 269884 -8886235 + (TA)n Simple_repeat Simple_repeat 1 39 0 711 74 0 113 chr1_random 270096 270299 -8885820 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 539 134 24 0 chr1_random 270314 270396 -8885723 - AluS SINE Alu -9 303 220 843 127 14 21 chr1_random 270397 270539 -8885580 - AluSq/x SINE Alu -171 141 1 2146 120 0 17 chr1_random 271325 271626 -8884493 - AluSc SINE Alu -13 296 1 264 213 0 0 chr1_random 273866 273927 -8882192 + (CACCAT)n Simple_repeat Simple_repeat 5 65 0 806 265 40 32 chr1_random 273937 274186 -8881933 - MIR SINE MIR -4 258 8 382 303 53 13 chr1_random 274316 274468 -8881651 - MER96 DNA MER1_type? -16 159 2 349 315 0 18 chr1_random 274973 275084 -8881035 - MIR3 SINE MIR -6 202 94 333 131 0 0 chr1_random 275404 275465 -8880654 + (TG)n Simple_repeat Simple_repeat 2 62 0 315 306 111 21 chr1_random 276292 276362 -8879757 - MIR SINE MIR -74 188 126 1947 162 10 0 chr1_random 276362 276664 -8879455 + AluJb SINE Alu 1 305 -7 315 306 111 21 chr1_random 276664 276737 -8879382 - MIR SINE MIR -136 126 32 550 184 19 10 chr1_random 276780 276883 -8879236 + MER5A DNA MER1_type 9 112 -77 184 247 281 11 chr1_random 276815 276904 -8879215 - MER5A DNA MER1_type -31 158 46 * 1387 185 52 13 chr1_random 276941 276967 -8879152 - MER33 DNA MER1_type -2262 323 299 497 165 13 0 chr1_random 276967 277046 -8879073 - MADE1 DNA Mariner 0 80 1 1387 185 52 13 chr1_random 277046 277327 -8878792 - MER33 DNA MER1_type -2286 299 4 946 201 5 36 chr1_random 277339 277533 -8878586 - MER5A DNA MER1_type -1 188 1 497 301 71 37 chr1_random 277930 278226 -8877893 + L2 LINE L2 2593 2898 -416 2421 52 0 10 chr1_random 278226 278515 -8877604 - AluY SINE Alu -1 310 25 479 317 64 57 chr1_random 278516 278935 -8877184 + L2 LINE L2 2879 3300 -13 804 247 110 0 chr1_random 280645 280864 -8875255 + MIR SINE MIR 10 252 -10 246 186 51 0 chr1_random 280864 280923 -8875196 + CT-rich Low_complexity Low_complexity 2 63 0 1101 180 12 49 chr1_random 281027 281271 -8874848 - MER96B DNA MER1_type? -180 237 3 958 181 36 62 chr1_random 282346 282463 -8873656 - MER5A DNA MER1_type 0 189 77 2340 92 0 7 chr1_random 282463 282768 -8873351 - AluY SINE Alu -8 303 1 958 181 36 62 chr1_random 282768 282843 -8873276 - MER5A DNA MER1_type -112 77 2 296 267 40 20 chr1_random 284215 284316 -8871803 - MIR SINE MIR -75 187 85 360 335 46 26 chr1_random 285977 286129 -8869990 + L2 LINE L2 3117 3271 -1 1046 187 70 48 chr1_random 286196 286525 -8869594 - MSTD LTR MaLR 0 396 1 410 172 86 109 chr1_random 287204 287425 -8868694 - L1ME4a LINE L1 -32 6089 5874 646 274 55 39 chr1_random 287661 287916 -8868203 + MIR SINE MIR 3 261 -1 2284 99 3 3 chr1_random 288034 288338 -8867781 - AluSc SINE Alu -5 304 1 2360 88 3 0 chr1_random 288375 288669 -8867450 - AluSp SINE Alu -18 295 1 377 313 12 54 chr1_random 288856 289022 -8867097 - MIR3 SINE MIR -34 174 16 1822 168 0 3 chr1_random 290740 291025 -8865094 - AluJb SINE Alu -28 284 1 434 260 10 0 chr1_random 291025 291121 -8864998 - MER2 DNA MER2_type -247 98 2 708 249 165 30 chr1_random 291383 291753 -8864366 - MER77 LTR ERV1 -4 601 182 228 227 0 45 chr1_random 291920 291986 -8864133 - MER77 LTR ERV1 -490 115 53 24 53 0 0 chr1_random 293660 293698 -8862421 + AT_rich Low_complexity Low_complexity 1 38 0 579 306 44 29 chr1_random 294543 294749 -8861370 + MIR SINE MIR 2 210 -52 * 835 277 56 30 chr1_random 294731 295070 -8861049 - L2 LINE L2 -1 3312 2965 1429 220 46 39 chr1_random 295073 295532 -8860587 + MLT1C LTR MaLR 6 467 0 786 242 81 23 chr1_random 295532 295792 -8860327 - L2 LINE L2 -342 2972 2698 241 309 25 25 chr1_random 296383 296464 -8859655 - L2 LINE L2 -1 3312 3232 1395 89 6 0 chr1_random 297805 297985 -8858134 + AluY SINE Alu 121 301 -10 369 109 62 0 chr1_random 297985 298049 -8858070 - L1PA16 LINE L1 -42 6124 6057 33 0 0 0 chr1_random 298090 298123 -8857996 + AT_rich Low_complexity Low_complexity 1 33 0 2413 159 33 2 chr1_random 298123 298575 -8857544 - L1PA16 LINE L1 -43 6123 5658 295 68 0 0 chr1_random 298587 298631 -8857488 - L1PA16 LINE L1 -488 5678 5635 * 1507 110 59 4 chr1_random 298629 298884 -8857235 + L1PA16 LINE L1 5387 5655 -511 569 133 15 6 chr1_random 298882 299000 -8857119 - L1MB7 LINE L1 -303 5828 5714 * 249 253 58 0 chr1_random 298973 299060 -8857059 - L1M4 LINE L1 -2524 3622 3531 * 684 259 40 11 chr1_random 299089 299263 -8856856 + MER5A DNA MER1_type 9 187 -2 202 276 61 20 chr1_random 299342 299440 -8856679 - L3 LINE CR1 -285 1292 1191 415 284 10 0 chr1_random 299476 299578 -8856541 + L2 LINE L2 3210 3312 -1 233 183 113 0 chr1_random 299612 299683 -8856436 - MLT1K LTR MaLR 0 588 510 344 206 0 16 chr1_random 301292 301355 -8854764 + tRNA-Ile-ATT tRNA tRNA 3 64 -13 180 111 0 0 chr1_random 301561 301588 -8854531 + (TC)n Simple_repeat Simple_repeat 2 28 0 956 200 14 19 chr1_random 303990 304200 -8851919 - MER3 DNA MER1_type 0 209 1 2822 174 43 49 chr1_random 304452 305149 -8850970 + LTR8A LTR ERV1 34 726 -1 233 219 14 0 chr1_random 305160 305233 -8850886 + CT-rich Low_complexity Low_complexity 2 75 0 413 280 27 47 chr1_random 305523 305552 -8850567 - MIR SINE MIR -81 181 153 2084 141 3 0 chr1_random 305552 305864 -8850255 - AluSq SINE Alu 0 313 1 413 280 27 47 chr1_random 305864 305984 -8850135 - MIR SINE MIR -109 153 35 2225 90 33 0 chr1_random 306655 306956 -8849163 - AluSp SINE Alu -2 311 1 195 256 0 0 chr1_random 307703 307746 -8848373 - L2 LINE L2 0 3313 3271 576 276 78 51 chr1_random 308758 308975 -8847144 - MIR SINE MIR -8 254 32 2040 167 0 0 chr1_random 309050 309362 -8846757 + AluJb SINE Alu 1 312 0 201 321 85 9 chr1_random 309503 309609 -8846510 + L2 LINE L2 1611 1724 -1590 513 82 0 14 chr1_random 309713 309786 -8846333 - Alu SINE Alu -238 72 1 524 301 84 30 chr1_random 309789 310136 -8845983 + L2 LINE L2 2324 2741 -573 4007 190 55 44 chr1_random 310136 312668 -8843451 + L1MD1 LINE L1 1324 6107 -529 2278 191 14 61 chr1_random 313173 313734 -8842385 + L1MD1 LINE L1 6089 6623 -13 851 193 47 0 chr1_random 313749 313961 -8842158 + L1MD3 LINE L1 7769 7990 -5 * 990 239 71 58 chr1_random 313958 314507 -8841612 + L1MC4a LINE L1 1844 2399 -3997 269 290 41 30 chr1_random 314583 314752 -8841367 + L1MC4a LINE L1 5330 5500 -735 432 283 140 12 chr1_random 314768 315117 -8841002 + L1MC4a LINE L1 5571 5878 -361 2410 87 3 3 chr1_random 315493 315802 -8840317 - AluSc SINE Alu 0 309 1 341 312 52 7 chr1_random 315962 316116 -8840003 + LTR33 LTR ERVL 356 516 -5 501 259 99 33 chr1_random 316292 316504 -8839615 + MIR SINE MIR 2 227 -35 2089 113 7 7 chr1_random 318333 318634 -8837485 + AluSx SINE Alu 1 301 -11 317 228 12 20 chr1_random 318876 318961 -8837158 + MER5B DNA MER1_type 16 109 -80 285 51 0 0 chr1_random 319684 319723 -8836396 + (CA)n Simple_repeat Simple_repeat 2 40 0 2242 112 3 3 chr1_random 320273 320576 -8835543 - AluSg SINE Alu -7 303 1 957 259 86 53 chr1_random 320686 321157 -8834962 - MER34 LTR ERV1 0 542 51 2211 128 0 0 chr1_random 321157 321462 -8834657 + AluSx SINE Alu 1 305 -7 957 259 86 53 chr1_random 321462 321515 -8834604 - MER34 LTR ERV1 -491 51 1 363 244 250 6 chr1_random 321777 321941 -8834178 - MIR SINE MIR -11 251 48 403 360 29 0 chr1_random 322137 322273 -8833846 + L2 LINE L2 3132 3271 -1 251 244 116 23 chr1_random 322652 322738 -8833381 - MER5C DNA MER1_type 0 324 231 469 244 34 8 chr1_random 322762 322881 -8833238 - MER5C DNA MER1_type -200 124 3 1178 180 88 10 chr1_random 322922 323217 -8832902 - MER33 DNA MER1_type -6 318 1 197 208 38 38 chr1_random 323466 323519 -8832600 - L2 LINE L2 -8 3264 3212 2138 186 43 9 chr1_random 325558 326004 -8830115 + LOR1b LTR ERV1 1 461 0 254 304 0 0 chr1_random 326084 326153 -8829966 - MER96 DNA MER1_type? -106 69 1 779 193 39 0 chr1_random 326596 326777 -8829342 + MER53 DNA DNA 2 189 0 2370 101 0 0 chr1_random 326828 327135 -8828984 - AluSc SINE Alu -2 307 1 2313 63 27 13 chr1_random 327366 327666 -8828453 - AluY SINE Alu -7 304 1 290 326 30 30 chr1_random 327673 327808 -8828311 - MIR SINE MIR -52 210 76 * 367 323 144 13 chr1_random 327804 328033 -8828086 - MIR SINE MIR -2 260 2 533 42 14 0 chr1_random 330790 330862 -8825257 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 389 303 74 11 chr1_random 331953 332128 -8823991 + MIR SINE MIR 16 201 -61 1727 179 4 0 chr1_random 332671 332944 -8823175 - AluJb SINE Alu -32 280 7 557 325 39 14 chr1_random 334987 335041 -8821078 + L1MEc LINE L1 251 302 -6305 286 42 42 21 chr1_random 335041 335089 -8821030 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 557 325 39 14 chr1_random 335089 335317 -8820802 + L1MEc LINE L1 302 540 -6067 544 308 31 26 chr1_random 335537 335953 -8820166 + L1MEc LINE L1 799 1216 -5391 369 268 43 21 chr1_random 335953 336115 -8820004 + L1MEc LINE L1 1481 2085 -4342 256 234 52 0 chr1_random 336154 336231 -8819888 + L1MEc LINE L1 1946 2026 -4581 225 273 0 0 chr1_random 336237 336292 -8819827 + (TATATG)n Simple_repeat Simple_repeat 4 58 0 3795 295 97 40 chr1_random 336296 337639 -8818480 + L1MEc LINE L1 2044 3308 -3118 2400 83 0 3 chr1_random 337639 337940 -8818179 + AluY SINE Alu 12 311 0 3795 295 97 40 chr1_random 337940 339558 -8816561 + L1MEc LINE L1 3308 5132 -1294 2205 113 0 3 chr1_random 339558 339851 -8816268 - AluSc SINE Alu -13 296 5 1268 75 6 0 chr1_random 339952 340111 -8816008 + AluY SINE Alu 142 301 -10 420 232 67 18 chr1_random 340112 340276 -8815843 + L1MEc LINE L1 5266 5437 -989 293 153 0 17 chr1_random 340702 340761 -8815358 + CT-rich Low_complexity Low_complexity 1 58 0 189 366 40 20 chr1_random 341350 341451 -8814668 - MIR SINE MIR -68 140 38 249 398 8 8 chr1_random 341561 341679 -8814440 + L2 LINE L2 3136 3253 -19 222 37 0 0 chr1_random 341684 341711 -8814408 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 287 309 31 10 chr1_random 341753 341850 -8814269 - MER5B DNA MER1_type -19 159 61 314 214 12 60 chr1_random 342770 342854 -8813265 - MER81 DNA DNA -34 80 1 243 0 0 0 chr1_random 343035 343062 -8813057 + (GA)n Simple_repeat Simple_repeat 2 28 0 183 119 24 48 chr1_random 343301 343343 -8812776 + L2 LINE L2 675 715 -2599 2269 118 0 13 chr1_random 343372 343687 -8812432 + AluSq SINE Alu 1 311 -2 1976 113 0 21 chr1_random 343689 344004 -8812115 + AluSx SINE Alu 1 309 0 505 308 188 15 chr1_random 344004 344339 -8811780 - LTR16C LTR ERVL -10 481 89 3022 280 188 23 chr1_random 344426 345853 -8810266 + L2 LINE L2 720 2381 -933 1628 131 51 4 chr1_random 345872 346146 -8809973 - L1PB2 LINE L1 -1 6150 5864 11191 208 27 7 chr1_random 346148 347027 -8809092 - L1 LINE L1 -844 5302 4442 198 0 0 0 chr1_random 347027 347049 -8809070 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 11191 208 27 7 chr1_random 347049 348950 -8807169 - L1 LINE L1 -1704 4442 2465 824 298 105 13 chr1_random 348953 349268 -8806851 + L2 LINE L2 2357 2700 -614 2092 128 7 0 chr1_random 349271 349568 -8806551 + AluSx SINE Alu 1 299 -13 188 67 33 0 chr1_random 349574 349604 -8806515 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1189 306 93 14 chr1_random 349633 350009 -8806110 + L2 LINE L2 1801 2227 -1087 1129 246 141 51 chr1_random 350009 350276 -8805843 + HsTC2c DNA MER2_type 1 243 -1655 2041 123 4 0 chr1_random 350276 350552 -8805567 + AluSg SINE Alu 1 277 -33 1129 246 141 51 chr1_random 350552 350952 -8805167 + HsTC2c DNA MER2_type 243 728 -1 1189 306 93 14 chr1_random 350952 351068 -8805051 + L2 LINE L2 2227 2332 -982 1374 82 16 5 chr1_random 351069 351285 -8804834 - AluSg/x SINE Alu 0 314 97 1733 107 0 0 chr1_random 351411 351635 -8804484 - AluSq SINE Alu -89 224 1 971 279 114 60 chr1_random 351718 352199 -8803920 + L2 LINE L2 2807 3313 0 429 305 84 39 chr1_random 352203 352406 -8803713 + MIR SINE MIR 42 253 -9 2039 135 6 16 chr1_random 352735 353046 -8803073 + AluSq SINE Alu 1 308 -5 188 294 0 20 chr1_random 353130 353181 -8802938 - L2 LINE L2 -219 3053 3004 270 311 0 0 chr1_random 353206 353296 -8802823 - MLT1J2 LTR MaLR -14 436 347 347 229 52 0 chr1_random 353393 353489 -8802630 - MLT1J2 LTR MaLR -237 213 113 506 238 94 74 chr1_random 353731 353934 -8802185 - L1ME4a LINE L1 -13 6108 5896 1715 64 0 28 chr1_random 353934 354152 -8801967 - AluY SINE Alu -17 294 83 506 238 94 74 chr1_random 354152 354247 -8801872 - L1ME4a LINE L1 -225 5896 5804 494 267 129 24 chr1_random 354257 354467 -8801652 - L2 LINE L2 0 3313 3082 595 133 0 0 chr1_random 354487 354577 -8801542 - AluSg/x SINE Alu -9 303 214 324 299 56 19 chr1_random 354577 354684 -8801435 - L2 LINE L2 -237 3035 2925 501 327 29 39 chr1_random 354698 354903 -8801216 - L2 LINE L2 -547 2767 2565 230 314 8 25 chr1_random 355720 355838 -8800281 + (TCTCTG)n Simple_repeat Simple_repeat 1 116 0 1672 113 0 8 chr1_random 355977 356234 -8799885 - MER51B LTR ERV1 0 377 123 230 322 33 11 chr1_random 356568 356658 -8799461 - L2 LINE L2 -19 3294 3203 314 315 157 11 chr1_random 356826 357004 -8799115 - L3b LINE CR1 -277 1306 1103 2205 96 0 0 chr1_random 357057 357363 -8798756 + AluSc SINE Alu 1 306 0 490 174 11 0 chr1_random 359692 359784 -8796335 - Tigger7 DNA MER2_type -5 2482 2390 1121 207 89 4 chr1_random 359789 360035 -8796084 - Tigger7 DNA MER2_type -2220 267 1 488 268 115 39 chr1_random 360225 360797 -8795322 - L1MEc LINE L1 -2572 3643 3028 458 338 35 35 chr1_random 360875 361189 -8794930 - L1MEc LINE L1 -4214 2182 1869 2412 191 31 0 chr1_random 361241 361686 -8794433 + LOR1b LTR ERV1 1 459 -2 321 342 162 13 chr1_random 362073 362301 -8793818 - MIR SINE MIR 0 262 1 1006 196 19 10 chr1_random 362532 362741 -8793378 + MER20 DNA MER1_type 5 215 -4 381 330 45 98 chr1_random 362752 362826 -8793293 - L2 LINE L2 -11 3261 3185 2431 85 0 0 chr1_random 362826 363120 -8792999 + AluSc SINE Alu 3 296 -13 381 330 45 98 chr1_random 363120 363710 -8792409 - L2 LINE L2 -87 3185 2628 238 313 106 38 chr1_random 363764 363924 -8792195 - L2 LINE L2 -683 2631 2461 354 304 11 0 chr1_random 363926 364018 -8792101 + L2 LINE L2 3210 3302 -11 213 326 85 22 chr1_random 364174 364398 -8791721 - L2 LINE L2 -1024 2290 2053 761 180 0 0 chr1_random 365082 365204 -8790915 + MER5A DNA MER1_type 1 122 -67 1332 230 60 40 chr1_random 365206 365659 -8790460 - MLT1C LTR MaLR 0 467 6 468 190 268 14 chr1_random 365736 365878 -8790241 + MER5B DNA MER1_type 1 178 0 281 219 31 94 chr1_random 365953 366049 -8790070 + MIR SINE MIR 122 211 -51 284 311 98 68 chr1_random 366550 366846 -8789273 - L2 LINE L2 -92 3221 2917 578 307 52 24 chr1_random 366848 367138 -8788981 - MLT1L LTR MaLR -172 443 146 908 207 69 0 chr1_random 367398 367601 -8788518 - MER20 DNA MER1_type 0 219 3 365 185 8 3 chr1_random 367650 367775 -8788344 - MER96 DNA MER1_type? 0 175 15 7735 161 3 44 chr1_random 368392 368649 -8787470 + L1PA14 LINE L1 3912 4178 -1983 2346 115 0 3 chr1_random 368649 368962 -8787157 + AluSx SINE Alu 1 312 0 7735 161 3 44 chr1_random 368962 370630 -8785489 + L1PA14 LINE L1 4178 5779 -382 2213 92 0 0 chr1_random 370630 370911 -8785208 + AluY SINE Alu 1 281 -30 7735 161 3 44 chr1_random 370911 371279 -8784840 + L1PA14 LINE L1 5779 6161 0 258 116 0 0 chr1_random 372132 372175 -8783944 + (CA)n Simple_repeat Simple_repeat 2 44 0 2285 119 3 0 chr1_random 372881 373191 -8782928 + AluSx SINE Alu 1 311 -1 239 291 94 39 chr1_random 373307 373434 -8782685 + MLT1J2 LTR MaLR 291 424 -26 262 355 9 9 chr1_random 373464 373571 -8782548 - MIR SINE MIR -62 146 40 708 199 30 10 chr1_random 373840 374041 -8782078 - LTR54 LTR ERV1 0 510 306 1279 183 20 16 chr1_random 374402 374648 -8781471 - AluJb SINE Alu -25 287 41 370 38 0 19 chr1_random 374748 374801 -8781318 - MADE1 DNA Mariner 0 80 29 1705 191 21 9 chr1_random 374814 375150 -8780969 - MER61A LTR ERV1 -3 340 1 499 271 123 35 chr1_random 375554 375838 -8780281 - MLT1J1 LTR MaLR -3 443 135 386 349 55 17 chr1_random 375945 376180 -8779939 - L2 LINE L2 -2296 1018 775 619 291 56 5 chr1_random 376250 376463 -8779656 + MIR SINE MIR 13 236 -26 2158 121 3 0 chr1_random 376940 377230 -8778889 + AluSx SINE Alu 6 296 -16 473 228 200 0 chr1_random 377230 377375 -8778744 + MER5A DNA MER1_type 16 189 0 2119 150 63 0 chr1_random 377911 378290 -8777829 + MER57A LTR ERV1 1 403 0 1635 228 68 30 chr1_random 378720 379246 -8776873 + L1MC4a LINE L1 7263 7808 0 640 113 44 6 chr1_random 379437 379596 -8776523 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 189 180 0 0 chr1_random 379605 379655 -8776464 + (CTAG)n Simple_repeat Simple_repeat 2 51 0 1724 171 17 90 chr1_random 379656 380077 -8776042 + MLT1B LTR MaLR 1 390 0 976 361 45 31 chr1_random 380292 380805 -8775314 + L3 LINE CR1 1056 1575 -2 336 306 18 9 chr1_random 380918 381029 -8775090 - MER5B DNA MER1_type -59 119 8 512 307 23 74 chr1_random 381572 381838 -8774281 - MIR SINE MIR 0 262 16 180 0 0 0 chr1_random 382158 382178 -8773941 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 256 289 114 40 chr1_random 382469 382620 -8773499 + L1ME4a LINE L1 4516 4655 -1491 1954 79 0 4 chr1_random 382620 382896 -8773223 - AluY SINE Alu 0 311 40 256 289 114 40 chr1_random 382896 383017 -8773102 + L1ME4a LINE L1 4655 4808 -1338 300 265 76 0 chr1_random 384122 384254 -8771865 + MER103 DNA DNA 6 147 -19 22 70 0 0 chr1_random 384407 384450 -8771669 + AT_rich Low_complexity Low_complexity 1 43 0 186 43 0 0 chr1_random 384573 384596 -8771523 + (CAA)n Simple_repeat Simple_repeat 2 24 0 189 74 0 0 chr1_random 384743 384770 -8771349 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 21 36 0 0 chr1_random 384884 384912 -8771207 + AT_rich Low_complexity Low_complexity 1 28 0 1240 252 97 23 chr1_random 384956 385371 -8770748 + L1ME4a LINE L1 5511 5981 -140 1909 148 7 10 chr1_random 385371 385676 -8770443 + AluJb SINE Alu 1 304 -8 1240 252 97 23 chr1_random 385676 385827 -8770292 + L1ME4a LINE L1 5981 6119 -2 1933 135 10 26 chr1_random 388855 389159 -8766960 + AluSx SINE Alu 1 299 -13 315 0 0 0 chr1_random 390713 390748 -8765371 + (TA)n Simple_repeat Simple_repeat 1 35 0 1739 154 57 51 chr1_random 390903 391254 -8764865 + LTR32 LTR ERVL 16 368 -103 667 232 0 7 chr1_random 391315 391466 -8764653 + LTR32 LTR ERVL 322 471 0 794 253 98 25 chr1_random 391531 391776 -8764343 - L2 LINE L2 -4 3309 3047 735 196 42 42 chr1_random 391851 392040 -8764079 - L2 LINE L2 -654 2660 2472 219 229 29 14 chr1_random 393778 393848 -8762271 + A-rich Low_complexity Low_complexity 5 75 0 1339 232 42 8 chr1_random 394088 394441 -8761678 + MLT1A1 LTR MaLR 1 365 0 3558 129 7 12 chr1_random 394441 395008 -8761111 + MER34B LTR ERV1 2 565 0 299 332 70 42 chr1_random 395034 395256 -8760863 - L2 LINE L2 -431 2883 2650 2025 128 0 56 chr1_random 395256 395576 -8760543 + AluSx SINE Alu 1 302 -10 299 332 70 42 chr1_random 395576 395639 -8760480 - L2 LINE L2 -664 2650 2590 27 0 0 0 chr1_random 396135 396162 -8759957 + AT_rich Low_complexity Low_complexity 1 27 0 190 221 4 0 chr1_random 397478 397524 -8758595 + MIR SINE MIR 37 84 -124 1118 221 99 48 chr1_random 397846 398262 -8757857 - MLT1D LTR MaLR 0 505 69 348 300 95 29 chr1_random 398291 398501 -8757618 - L2 LINE L2 -119 3194 2971 239 270 50 40 chr1_random 399579 399679 -8756440 + MIR3 SINE MIR 99 199 -9 896 264 37 8 chr1_random 399684 399930 -8756189 - MIR SINE MIR -2 260 8 2267 112 0 3 chr1_random 402463 402768 -8753351 + AluSq SINE Alu 1 304 -9 516 293 156 14 chr1_random 402862 403074 -8753045 + L2 LINE L2 3072 3313 0 292 308 42 17 chr1_random 403181 403301 -8752818 - L2 LINE L2 -16 3297 3175 322 246 161 8 chr1_random 404046 404164 -8751955 - L1MC/D LINE L1 -2375 5433 5302 192 67 22 44 chr1_random 404921 404966 -8751153 + (CA)n Simple_repeat Simple_repeat 1 44 0 364 271 0 107 chr1_random 405188 405310 -8750809 + MIR SINE MIR 41 149 -59 187 235 0 0 chr1_random 405425 405459 -8750660 + MIR3 SINE MIR 149 182 -26 2184 108 3 3 chr1_random 406354 406660 -8749459 + AluSq SINE Alu 1 306 -7 193 235 96 132 chr1_random 407682 407722 -8748397 - MIR3 SINE MIR -63 145 105 207 0 0 0 chr1_random 407722 407745 -8748374 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 193 235 96 132 chr1_random 407745 407840 -8748279 - MIR3 SINE MIR -103 105 15 191 61 30 0 chr1_random 408005 408038 -8748081 + (CA)n Simple_repeat Simple_repeat 2 35 0 208 213 43 21 chr1_random 408387 408481 -8747638 + (TA)n Simple_repeat Simple_repeat 1 96 0 22 0 0 0 chr1_random 408481 408503 -8747616 + AT_rich Low_complexity Low_complexity 1 22 0 240 143 0 0 chr1_random 408976 409018 -8747101 + (T)n Simple_repeat Simple_repeat 1 42 0 621 48 0 0 chr1_random 409018 409102 -8747017 - L1PA2 LINE L1 0 6155 6072 2280 114 0 0 chr1_random 409105 409404 -8746715 - AluSx SINE Alu -11 301 3 258 273 13 26 chr1_random 409792 409869 -8746250 - MARNA DNA Mariner -61 525 450 314 361 89 11 chr1_random 409880 410060 -8746059 + MIR3 SINE MIR 10 203 -5 809 253 25 12 chr1_random 410123 410368 -8745751 - MARNA DNA Mariner -203 383 136 2171 76 0 0 chr1_random 410621 410910 -8745209 - AluSc SINE Alu 0 304 16 351 269 244 0 chr1_random 410926 411082 -8745037 - MIR SINE MIR 0 262 69 267 222 71 63 chr1_random 411201 411327 -8744792 - LTR16C LTR ERVL 0 491 365 193 350 42 49 chr1_random 411605 411748 -8744371 + L2 LINE L2 2913 3054 -218 2094 136 3 0 chr1_random 411818 412120 -8743999 - AluSx SINE Alu -9 303 1 243 400 53 0 chr1_random 412585 412680 -8743439 + L2 LINE L2 3111 3210 -62 683 292 29 45 chr1_random 412745 412988 -8743131 - MIR SINE MIR 0 262 24 207 100 0 0 chr1_random 413073 413103 -8743016 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 618 175 159 42 chr1_random 413107 413296 -8742823 + MER20 DNA MER1_type 1 211 -8 1990 146 7 10 chr1_random 414463 414765 -8741354 + AluSx SINE Alu 1 301 -11 207 229 21 0 chr1_random 414837 414885 -8741234 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 204 371 113 39 chr1_random 415508 415791 -8740328 + L2 LINE L2 82 385 -2929 727 281 66 37 chr1_random 415796 416038 -8740081 + MIR SINE MIR 7 255 -7 249 269 103 55 chr1_random 416470 416598 -8739521 - MIR SINE MIR -65 143 30 183 259 96 96 chr1_random 417398 417533 -8738586 - L2 LINE L2 -15 3298 3164 22 56 0 0 chr1_random 417803 417839 -8738280 + AT_rich Low_complexity Low_complexity 1 36 0 348 339 75 16 chr1_random 417910 418096 -8738023 + L3 LINE CR1 1325 1521 -56 291 146 0 0 chr1_random 419620 419675 -8736444 + (TATG)n Simple_repeat Simple_repeat 4 58 0 2579 50 0 3 chr1_random 419730 420033 -8736086 + AluY SINE Alu 1 302 -9 22 0 0 0 chr1_random 420333 420355 -8735764 + AT_rich Low_complexity Low_complexity 1 22 0 258 234 16 31 chr1_random 420519 420583 -8735536 + L2 LINE L2 3249 3311 -2 256 305 48 9 chr1_random 420901 421006 -8735113 - MIR SINE MIR -137 125 17 * 2170 270 108 38 chr1_random 420964 422223 -8733896 + L2 LINE L2 1880 3313 0 318 386 14 15 chr1_random 422666 422829 -8733290 + MIR SINE MIR 2 161 -63 28 48 0 0 chr1_random 423645 423687 -8732432 + AT_rich Low_complexity Low_complexity 1 42 0 695 236 73 0 chr1_random 423949 424114 -8732005 - MER5B DNA MER1_type 0 178 2 1842 142 137 11 chr1_random 424416 424789 -8731330 - MSTA LTR MaLR -3 425 6 1120 153 63 93 chr1_random 425237 425570 -8730549 - MER33 DNA MER1_type 0 324 2 181 339 101 18 chr1_random 426341 426450 -8729669 + MIR SINE MIR 29 146 -62 2839 150 27 7 chr1_random 427768 428322 -8727797 + L1MA8 LINE L1 4321 4885 -1261 * 5405 122 22 22 chr1_random 428315 429294 -8726825 + L1MA8 LINE L1 5309 6287 -4 398 238 12 0 chr1_random 429353 429433 -8726686 + Charlie1a DNA MER1_type 2 82 -1373 5657 180 22 30 chr1_random 429440 430458 -8725661 - L1MC1 LINE L1 -17 6316 5308 2073 107 10 3 chr1_random 430458 430748 -8725371 - AluSx SINE Alu -20 292 1 5657 180 22 30 chr1_random 430748 431171 -8724948 - L1MC1 LINE L1 -1025 5308 4883 618 206 85 0 chr1_random 431176 431341 -8724778 + Charlie1a DNA MER1_type 69 247 -1208 180 278 0 0 chr1_random 431346 431418 -8724701 + GA-rich Low_complexity Low_complexity 1 72 0 3763 191 29 49 chr1_random 431430 431797 -8724322 + Charlie1a DNA MER1_type 256 629 -2132 2163 101 3 33 chr1_random 431797 432104 -8724015 - AluSp SINE Alu -15 298 1 3763 191 29 49 chr1_random 432104 432471 -8723648 + Charlie1a DNA MER1_type 629 967 -1794 1804 171 20 13 chr1_random 432471 432750 -8723369 + AluJo SINE Alu 1 289 -23 226 0 0 0 chr1_random 432750 432775 -8723344 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1804 171 20 13 chr1_random 432775 432800 -8723319 + AluJo SINE Alu 289 312 0 3763 191 29 49 chr1_random 432800 433056 -8723063 + Charlie1a DNA MER1_type 967 1227 -228 1425 128 12 16 chr1_random 433978 434228 -8721891 + LTR1 LTR ERV1 1 249 -536 5963 108 72 79 chr1_random 434326 436360 -8719759 - pTR5 LTR ERV1 0 8399 66 299 194 0 0 chr1_random 436356 436418 -8719701 - HERV9 LTR ERV1 -835 7564 7503 * 774 141 48 83 chr1_random 436416 436729 -8719390 - HERV9 LTR ERV1 -5755 1141 840 2819 108 13 21 chr1_random 436774 437248 -8718871 + LTR1 LTR ERV1 316 785 0 408 353 21 58 chr1_random 437348 437538 -8718581 + MIR3 SINE MIR 11 193 -15 199 259 35 17 chr1_random 437578 437636 -8718483 - MIR SINE MIR -108 100 42 21 0 0 0 chr1_random 438108 438129 -8717990 + AT_rich Low_complexity Low_complexity 1 21 0 2813 13 0 0 chr1_random 438233 438540 -8717579 - AluY SINE Alu -4 307 1 379 335 19 25 chr1_random 438708 438869 -8717250 + MER5A DNA MER1_type 2 161 -28 348 293 89 27 chr1_random 438854 439079 -8717040 + L2 LINE L2 1859 2097 -1217 * 294 356 34 0 chr1_random 439236 439354 -8716765 + L2 LINE L2 3151 3272 0 21 0 0 0 chr1_random 439355 439376 -8716743 + AT_rich Low_complexity Low_complexity 1 21 0 450 289 0 0 chr1_random 440135 440239 -8715880 - MIR3 SINE MIR -48 160 57 302 294 106 56 chr1_random 441454 441614 -8714505 + MIR3 SINE MIR 35 202 -6 288 297 0 0 chr1_random 441867 441958 -8714161 + T-rich Low_complexity Low_complexity 1 91 0 241 311 118 0 chr1_random 442106 442225 -8713894 + MIR SINE MIR 78 210 -52 249 288 0 14 chr1_random 443244 443317 -8712802 - L2 LINE L2 -1 3271 3200 644 297 70 23 chr1_random 444015 444629 -8711490 - L1ME LINE L1 -387 5783 5156 471 330 78 22 chr1_random 444637 444998 -8711121 - L1ME LINE L1 -1037 5109 4729 1935 226 43 16 chr1_random 446009 446522 -8709597 + MER74A LTR ERVL 1 527 -31 1130 273 96 33 chr1_random 446678 447107 -8709012 - LTR16B LTR ERVL -8 456 1 972 159 0 0 chr1_random 447425 447601 -8708518 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 264 314 180 29 chr1_random 448154 448399 -8707720 + L2 LINE L2 1139 1420 -1894 313 259 267 0 chr1_random 448425 448541 -8707578 + L2 LINE L2 2600 2746 -568 570 369 49 55 chr1_random 448689 449055 -8707064 + L2 LINE L2 2909 3272 0 1585 108 39 0 chr1_random 450335 450595 -8705524 + L1MA3 LINE L1 6034 6303 -2 364 344 27 4 chr1_random 450726 450878 -8705241 - MIR SINE MIR -67 141 1 576 166 76 54 chr1_random 451551 451674 -8704445 + L1MC4a LINE L1 7154 7273 -721 2024 169 26 10 chr1_random 451674 452058 -8704061 - MLT1B LTR MaLR 0 390 1 576 166 76 54 chr1_random 452058 452099 -8704020 + L1MC4a LINE L1 7273 7497 -497 1940 249 70 78 chr1_random 452159 453687 -8702432 - L1MCc LINE L1 -4598 2524 818 862 294 51 49 chr1_random 453785 454011 -8702108 - L1MCc LINE L1 -5826 597 373 2104 106 0 7 chr1_random 454011 454294 -8701825 + AluSg SINE Alu 24 304 -6 862 294 51 49 chr1_random 454294 454638 -8701481 - L1MCc LINE L1 -6050 373 26 240 275 25 0 chr1_random 454841 454921 -8701198 - L1M4 LINE L1 -3377 2769 2688 327 343 14 34 chr1_random 455304 455450 -8700669 - HAL1b LINE L1 -656 692 550 2663 42 0 3 chr1_random 455594 455905 -8700214 + AluYa5 SINE Alu 1 310 -1 314 286 30 45 chr1_random 456383 456516 -8699603 - L1ME LINE L1 -467 5654 5524 1654 195 63 59 chr1_random 457868 458346 -8697773 + MLT2B1 LTR ERVL 1 480 -40 250 70 23 23 chr1_random 458394 458437 -8697682 + MLT2B1 LTR ERVL 472 514 -6 261 279 13 0 chr1_random 459070 459149 -8696970 - MIR3 SINE MIR -16 192 113 23 78 0 0 chr1_random 460210 460261 -8695858 + AT_rich Low_complexity Low_complexity 1 51 0 991 168 6 12 chr1_random 460382 460543 -8695576 + FRAM SINE Alu 1 158 -18 948 301 104 37 chr1_random 460580 461071 -8695048 + MLT1G1 LTR MaLR 72 595 0 237 341 16 0 chr1_random 461084 461210 -8694909 + MLT1G1-int LTR MaLR 15 142 -1229 754 290 32 0 chr1_random 461212 461491 -8694628 + MLT1G1-int LTR MaLR 292 579 -792 2215 91 3 17 chr1_random 461552 461849 -8694270 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr1_random 462055 462076 -8694043 + AT_rich Low_complexity Low_complexity 1 21 0 4981 189 45 13 chr1_random 462247 464180 -8691939 + L1MB8 LINE L1 3958 5956 -222 1220 210 34 8 chr1_random 464196 464549 -8691570 + L1M4 LINE L1 4302 4663 -1483 748 186 14 56 chr1_random 464552 464767 -8691352 + L1MB8 LINE L1 5964 6169 -9 505 208 89 48 chr1_random 464777 464945 -8691174 + L1MD3 LINE L1 7647 7821 -174 1000 236 171 78 chr1_random 465520 466046 -8690073 + MLT1G1 LTR MaLR 1 575 -20 7645 23 5 26 chr1_random 466214 467839 -8688280 - L1PA3 LINE L1 -1 6154 4548 653 13 0 0 chr1_random 467839 467916 -8688203 - L1P LINE L1 -1517 4629 4553 36504 39 2 2 chr1_random 467916 472549 -8683570 - L1P LINE L1 -1512 4634 1 255 242 22 11 chr1_random 472553 472644 -8683475 - L1ME2 LINE L1 -64 6100 6009 489 298 19 6 chr1_random 472646 472804 -8683315 - MER63A DNA MER1_type 0 210 51 1847 262 43 24 chr1_random 472859 473628 -8682491 - L1ME2 LINE L1 -151 6013 5222 651 99 0 0 chr1_random 473628 473729 -8682390 + (TCTA)n Simple_repeat Simple_repeat 3 103 0 1847 262 43 24 chr1_random 473729 473798 -8682321 - L1ME2 LINE L1 -942 5222 5156 2194 135 3 0 chr1_random 473926 474237 -8681882 - AluSx SINE Alu 0 312 1 24 0 0 0 chr1_random 474405 474429 -8681690 + AT_rich Low_complexity Low_complexity 1 24 0 1626 248 69 28 chr1_random 474433 474861 -8681258 - L1ME2 LINE L1 -290 5874 5465 405 0 0 0 chr1_random 474869 474914 -8681205 + (TG)n Simple_repeat Simple_repeat 1 45 0 1819 170 7 3 chr1_random 474914 475193 -8680926 - AluSx SINE Alu -29 283 1 1626 248 69 28 chr1_random 475193 475556 -8680563 - L1ME2 LINE L1 -699 5465 4875 1692 229 47 45 chr1_random 475577 476437 -8679682 - L1M4 LINE L1 -743 5472 4626 3118 143 21 0 chr1_random 476437 476961 -8679158 - LTR26 LTR ERV1 0 603 69 744 279 40 9 chr1_random 477054 477380 -8678739 - L1M4 LINE L1 -1860 4355 4020 522 143 44 0 chr1_random 477424 477515 -8678604 + MSTC LTR MaLR 1 95 -333 1679 170 0 63 chr1_random 477966 478313 -8677806 + MSTC LTR MaLR 85 409 -19 1035 293 67 27 chr1_random 478320 479223 -8676896 - L1M4 LINE L1 -2221 3994 3040 288 297 46 15 chr1_random 479281 479547 -8676572 - L1MEc LINE L1 -4738 1644 1202 1990 194 31 6 chr1_random 479581 480116 -8676003 - LTR43 LTR ERV1 0 602 1 1456 246 55 2 chr1_random 480117 480626 -8675493 - L1MEc LINE L1 -5042 1354 819 1725 85 0 5 chr1_random 480629 480853 -8675266 - AluY SINE Alu -6 305 83 970 68 0 0 chr1_random 480853 480970 -8675149 - AluY SINE Alu -62 249 133 2192 113 0 3 chr1_random 480970 481271 -8674848 - AluY SINE Alu -11 300 1 973 259 50 72 chr1_random 481284 481759 -8674360 - L1MEc LINE L1 -5582 814 350 844 280 67 10 chr1_random 481731 482117 -8674002 - L1MCc LINE L1 -4887 1536 1129 * 288 311 32 64 chr1_random 482555 482806 -8673313 - L1MCc LINE L1 -6122 301 59 272 275 22 0 chr1_random 482944 483035 -8673084 - L1MCc LINE L1 -6313 110 18 511 289 104 19 chr1_random 485222 485433 -8670686 - L2 LINE L2 -1 3312 3084 338 291 130 25 chr1_random 486064 486269 -8669850 + MIR SINE MIR 11 234 -28 560 199 88 18 chr1_random 486501 486672 -8669447 - L1MEc LINE L1 -5438 958 776 1609 246 85 21 chr1_random 487943 488459 -8667660 - MLT1H LTR MaLR 0 549 1 832 261 171 46 chr1_random 488967 489358 -8666761 + MLT1H LTR MaLR 86 525 -24 235 292 31 0 chr1_random 489622 489687 -8666432 - MIR SINE MIR -64 144 78 818 158 0 0 chr1_random 489730 489844 -8666275 - FLAM_C SINE Alu -13 130 17 879 165 0 0 chr1_random 490022 490155 -8665964 + FLAM_C SINE Alu 1 133 0 222 293 112 26 chr1_random 490318 490434 -8665685 + L3 LINE CR1 1450 1575 -2 205 314 82 100 chr1_random 490525 490793 -8665326 + L2 LINE L2 1973 2231 -1083 1272 252 98 19 chr1_random 490793 491170 -8664949 + MLT1I LTR MaLR 1 407 -2 205 314 82 100 chr1_random 491170 491340 -8664779 + L2 LINE L2 2231 2403 -911 189 348 109 27 chr1_random 491464 491685 -8664434 + L2 LINE L2 2568 2806 -508 195 326 54 54 chr1_random 492030 492159 -8663960 + L2 LINE L2 3163 3291 -22 180 77 0 0 chr1_random 492166 492192 -8663927 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 217 352 150 13 chr1_random 493405 493632 -8662487 - L2 LINE L2 -338 2976 2719 996 275 9 0 chr1_random 493720 493942 -8662177 + MER58A DNA MER1_type 1 224 0 186 43 0 0 chr1_random 493973 493996 -8662123 + (A)n Simple_repeat Simple_repeat 1 23 0 192 235 41 71 chr1_random 494464 494562 -8661557 - MIR SINE MIR -89 173 79 259 282 28 0 chr1_random 494582 494653 -8661466 + MIR SINE MIR 8 80 -182 308 360 75 5 chr1_random 494826 495012 -8661107 - MIR SINE MIR -55 207 9 289 254 79 56 chr1_random 496150 496276 -8659843 + MIR3 SINE MIR 3 131 -77 2520 57 3 0 chr1_random 496280 496579 -8659540 - AluY SINE Alu -11 300 1 212 320 100 10 chr1_random 497455 497555 -8658564 + L2 LINE L2 3200 3308 -5 376 333 7 28 chr1_random 497577 497718 -8658401 + MIR3 SINE MIR 70 207 -1 180 326 33 76 chr1_random 498932 499024 -8657095 - L2 LINE L2 0 3272 3185 2429 99 0 0 chr1_random 499080 499392 -8656727 - AluSq SINE Alu -1 312 1 21 36 0 0 chr1_random 499408 499436 -8656683 + AT_rich Low_complexity Low_complexity 1 28 0 216 100 0 25 chr1_random 499860 499900 -8656219 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 27 0 0 0 chr1_random 500156 500183 -8655936 + AT_rich Low_complexity Low_complexity 1 27 0 1391 282 99 72 chr1_random 500407 501234 -8654885 + L1MC4a LINE L1 3509 4312 -1834 300 57 0 0 chr1_random 501234 501269 -8654850 + U2 snRNA snRNA 1 35 -153 1391 282 99 72 chr1_random 501269 502758 -8653361 + L1MC4a LINE L1 4312 5403 -743 388 295 66 0 chr1_random 503702 503837 -8652282 - MIR3 SINE MIR -67 141 15 216 0 0 0 chr1_random 504013 504037 -8652082 + (TG)n Simple_repeat Simple_repeat 2 25 0 212 315 15 77 chr1_random 504192 504322 -8651797 - L2 LINE L2 -10 3262 3141 913 302 90 29 chr1_random 504584 505220 -8650899 + L2 LINE L2 2640 3313 0 466 330 69 9 chr1_random 506593 506811 -8649308 + MIR SINE MIR 32 262 0 406 317 50 0 chr1_random 507209 507329 -8648790 - MIR3 SINE MIR -23 185 60 423 159 89 48 chr1_random 507336 507464 -8648655 - MLT1H LTR MaLR 0 580 461 * 468 284 38 73 chr1_random 507433 507750 -8648369 - MLT1H LTR MaLR -198 351 46 549 238 0 0 chr1_random 509154 509276 -8646843 + MIR3 SINE MIR 81 202 -6 265 169 56 0 chr1_random 509841 509912 -8646207 + CT-rich Low_complexity Low_complexity 2 76 0 381 349 30 15 chr1_random 509913 510045 -8646074 - L2 LINE L2 -1 3271 3138 432 275 145 2 chr1_random 510223 510434 -8645685 - MIR SINE MIR -6 256 19 262 327 72 13 chr1_random 511567 511720 -8644399 - MLT1I LTR MaLR -144 265 104 204 356 76 23 chr1_random 511978 512110 -8644009 - L2 LINE L2 -35 3237 3099 232 316 138 20 chr1_random 512164 512316 -8643803 - MIR SINE MIR -40 222 53 241 291 94 62 chr1_random 512356 512704 -8643415 - L2 LINE L2 -204 3068 2697 838 177 0 0 chr1_random 512710 512834 -8643285 + FRAM SINE Alu 31 154 -22 750 199 111 18 chr1_random 513917 514088 -8642031 - MER5A DNA MER1_type 0 189 3 424 292 39 13 chr1_random 514278 514432 -8641687 + MIR SINE MIR 85 242 -20 285 246 27 64 chr1_random 515167 515277 -8640842 + MIR SINE MIR 156 261 -1 2256 91 0 20 chr1_random 515316 515613 -8640506 + AluSc SINE Alu 1 291 -18 6144 50 11 6 chr1_random 515614 516369 -8639750 + SVA Other Other 654 1412 0 231 340 258 0 chr1_random 516390 516487 -8639632 + L2 LINE L2 3142 3263 -9 637 317 0 40 chr1_random 516769 516968 -8639151 - MER91A DNA MER1_type -3 193 3 190 321 62 49 chr1_random 517028 517109 -8639010 - L2 LINE L2 -55 3258 3177 523 268 48 18 chr1_random 517156 517324 -8638795 + MIR SINE MIR 35 207 -55 731 221 8 0 chr1_random 517440 517571 -8638548 + FLAM_A SINE Alu 1 132 -1 348 304 7 51 chr1_random 519031 519169 -8636950 + MIR SINE MIR 21 152 -110 279 221 77 48 chr1_random 519176 519280 -8636839 - MLT1I LTR MaLR 0 409 303 320 256 13 13 chr1_random 519344 519422 -8636697 - MLT1I LTR MaLR -318 91 14 415 318 33 26 chr1_random 519972 520123 -8635996 + MIR3 SINE MIR 30 181 -27 435 214 43 60 chr1_random 520542 520659 -8635460 + L2 LINE L2 3199 3313 0 259 331 50 22 chr1_random 521099 521238 -8634881 + MIR SINE MIR 29 171 -91 356 244 15 61 chr1_random 521274 521405 -8634714 - L2 LINE L2 0 3313 3189 300 391 17 17 chr1_random 521983 522162 -8633957 - MIR3 SINE MIR -11 197 19 379 306 86 19 chr1_random 522975 523184 -8632935 - MIR SINE MIR -39 223 1 1634 56 0 28 chr1_random 523218 523433 -8632686 + AluY SINE Alu 100 308 -3 296 302 52 26 chr1_random 525140 525256 -8630863 - L2 LINE L2 -4 3309 3191 263 271 109 26 chr1_random 525491 525634 -8630485 + MIR SINE MIR 2 157 -65 2090 127 31 88 chr1_random 525812 526198 -8629921 - THE1B LTR MaLR 0 364 1 545 0 15 0 chr1_random 527586 527651 -8628468 + (TG)n Simple_repeat Simple_repeat 2 67 0 245 88 44 59 chr1_random 527654 527722 -8628397 + GA-rich Low_complexity Low_complexity 3 69 0 904 32 19 44 chr1_random 527746 527904 -8628215 + (GAAA)n Simple_repeat Simple_repeat 3 156 0 794 78 21 21 chr1_random 528014 528155 -8627964 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 687 174 26 17 chr1_random 528194 528433 -8627686 + GA-rich Low_complexity Low_complexity 1 236 -373 1915 143 48 0 chr1_random 528433 528726 -8627393 + AluSx SINE Alu 6 312 0 1170 135 76 0 chr1_random 528541 528816 -8627303 + AluSg/x SINE Alu 114 402 0 687 174 26 17 chr1_random 528726 528798 -8627321 + GA-rich Low_complexity Low_complexity 236 609 0 * 915 101 28 17 chr1_random 528835 529013 -8627106 + GA-rich Low_complexity Low_complexity 1 180 0 182 36 0 36 chr1_random 529017 529045 -8627074 + (GGGA)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr1_random 529380 529400 -8626719 + (TG)n Simple_repeat Simple_repeat 2 21 0 219 321 62 0 chr1_random 530922 531003 -8625116 + L2 LINE L2 3199 3284 -29 286 329 0 0 chr1_random 531678 531760 -8624359 + L2 LINE L2 3186 3267 -5 234 348 89 19 chr1_random 533468 533626 -8622493 - L2 LINE L2 -2 3270 3102 745 287 82 42 chr1_random 534038 534418 -8621701 - MLT1J LTR MaLR -103 408 14 1338 203 39 88 chr1_random 534754 535138 -8620981 - MLT1A1 LTR MaLR 0 365 1 545 342 97 35 chr1_random 535341 536005 -8620114 - L2 LINE L2 -2 3270 2576 445 278 40 0 chr1_random 536051 536177 -8619942 + MER58A DNA MER1_type 25 155 0 21 0 0 0 chr1_random 536943 536964 -8619155 + AT_rich Low_complexity Low_complexity 1 21 0 545 208 10 34 chr1_random 537172 537334 -8618785 - MER5A DNA MER1_type -33 145 4 228 240 213 0 chr1_random 537721 537796 -8618323 + MIR SINE MIR 112 202 -60 878 290 45 23 chr1_random 537796 538182 -8617937 - LTR16C LTR ERVL 0 476 98 206 260 0 0 chr1_random 539026 539076 -8617043 + (TA)n Simple_repeat Simple_repeat 1 50 0 1716 226 21 16 chr1_random 539992 540370 -8615749 - MLT1C LTR MaLR 0 467 88 1316 217 54 84 chr1_random 540370 540420 -8615699 - MLT2B1 LTR ERVL 0 520 470 216 67 0 0 chr1_random 540420 540450 -8615669 + (CA)n Simple_repeat Simple_repeat 1 30 0 1316 217 54 84 chr1_random 540450 540805 -8615314 - MLT2B1 LTR ERVL -50 470 127 * 2706 188 11 11 chr1_random 540799 541277 -8614842 - MLT2B1 LTR ERVL -41 479 2 180 209 0 0 chr1_random 542575 542581 -8613538 + (TA)n Simple_repeat Simple_repeat 2 7 -37 2143 134 3 0 chr1_random 542581 542888 -8613231 + AluSq SINE Alu 1 308 -5 180 209 0 0 chr1_random 542888 542924 -8613195 + (TA)n Simple_repeat Simple_repeat 6 44 0 1698 150 88 4 chr1_random 542929 543203 -8612916 + AluSx SINE Alu 1 297 -15 1868 174 3 0 chr1_random 545471 545775 -8610344 - AluJb SINE Alu -7 305 1 21 0 0 0 chr1_random 547370 547391 -8608728 + AT_rich Low_complexity Low_complexity 1 21 0 1720 178 43 0 chr1_random 548170 548446 -8607673 + AluSx SINE Alu 12 299 -13 31 0 0 0 chr1_random 548446 548477 -8607642 + AT_rich Low_complexity Low_complexity 1 31 0 668 278 25 37 chr1_random 548701 548946 -8607173 + L3 LINE CR1 1333 1574 -3 264 339 24 48 chr1_random 549136 549260 -8606859 - L3 LINE CR1 -304 1273 1153 333 68 0 0 chr1_random 549636 549680 -8606439 + (TA)n Simple_repeat Simple_repeat 2 45 0 2213 116 3 0 chr1_random 549680 549974 -8606145 - AluSg SINE Alu -15 295 1 1993 211 40 9 chr1_random 550139 550560 -8605559 + MLT1C LTR MaLR 34 467 0 186 71 0 0 chr1_random 550977 551005 -8605114 + (CAG)n Simple_repeat Simple_repeat 3 30 0 21893 155 19 17 chr1_random 551398 553914 -8602205 - L1MA1 LINE L1 0 7721 5211 2078 76 8 15 chr1_random 553914 554178 -8601941 - AluY SINE Alu -15 296 35 21893 155 19 17 chr1_random 554178 559344 -8596775 - L1MA1 LINE L1 -2510 5211 16 414 332 86 2 chr1_random 560229 560428 -8595691 - MIR SINE MIR -12 250 38 788 161 0 0 chr1_random 560443 560561 -8595558 + AluJo SINE Alu 2 119 -193 731 228 62 19 chr1_random 560631 560793 -8595326 + AluJo SINE Alu 129 297 -15 372 287 29 7 chr1_random 561146 561282 -8594837 - MIR SINE MIR -10 252 114 193 379 78 10 chr1_random 562139 562242 -8593877 - L3b LINE CR1 -22 1561 1452 226 312 32 104 chr1_random 562853 562961 -8593158 - L2 LINE L2 0 3313 3218 1877 204 64 0 chr1_random 562961 563304 -8592815 + MLT1A1 LTR MaLR 1 365 0 226 312 32 104 chr1_random 563304 563349 -8592770 - L2 LINE L2 -95 3218 3171 424 329 82 0 chr1_random 563521 563679 -8592440 + L2 LINE L2 3119 3289 -24 917 136 6 0 chr1_random 563683 563860 -8592259 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 1460 145 34 98 chr1_random 563968 564293 -8591826 + L1ME1 LINE L1 5371 5674 -492 261 186 0 0 chr1_random 564293 564336 -8591783 + MLT1A1 LTR MaLR 1 43 -353 1338 206 0 4 chr1_random 564338 564586 -8591533 + AluJo SINE Alu 49 295 -17 1090 166 52 129 chr1_random 564590 564939 -8591180 + MLT1A1 LTR MaLR 44 365 0 746 218 96 59 chr1_random 564941 565391 -8590728 + L1ME1 LINE L1 5675 6164 -2 530 337 48 16 chr1_random 565538 565787 -8590332 - MIR SINE MIR 0 262 6 363 302 102 69 chr1_random 565980 566225 -8589894 + L2 LINE L2 2533 2785 -529 774 220 14 0 chr1_random 566270 566411 -8589708 - FAM SINE Alu -36 149 7 877 319 53 45 chr1_random 566429 566524 -8589595 + L2 LINE L2 2827 2920 -393 1129 186 83 141 chr1_random 566524 566921 -8589198 + MLT1A2 LTR MaLR 1 374 0 877 319 53 45 chr1_random 566921 567292 -8588827 + L2 LINE L2 2920 3297 -16 29 28 0 0 chr1_random 567445 567481 -8588638 + AT_rich Low_complexity Low_complexity 1 36 0 788 151 28 0 chr1_random 569086 569265 -8586854 + L1MC1 LINE L1 6110 6333 0 307 296 70 35 chr1_random 569495 569637 -8586482 + MIR SINE MIR 25 171 -91 286 317 128 18 chr1_random 570751 570915 -8585204 - MIR3 SINE MIR 0 208 27 248 291 119 78 chr1_random 572247 572491 -8583628 - L2 LINE L2 0 3272 3019 451 252 69 23 chr1_random 572777 572908 -8583211 + L2 LINE L2 3136 3272 0 890 261 11 41 chr1_random 573779 574047 -8582072 + MIR SINE MIR 3 262 0 237 118 0 0 chr1_random 574964 574998 -8581121 + L2 LINE L2 3213 3246 -26 351 254 54 124 chr1_random 575139 575324 -8580795 + MER5B DNA MER1_type 3 174 -4 273 146 0 0 chr1_random 575712 575760 -8580359 + (TG)n Simple_repeat Simple_repeat 1 48 0 432 193 102 9 chr1_random 575972 576171 -8579948 - MER58B DNA MER1_type 0 341 45 409 336 31 8 chr1_random 577379 577507 -8578612 + MER91A DNA MER1_type 1 131 -65 270 270 45 79 chr1_random 577577 577666 -8578453 + MER91A DNA MER1_type 111 196 0 2052 144 25 63 chr1_random 578503 578759 -8577360 - MER7A DNA MER2_type -2692 346 109 2056 107 0 0 chr1_random 578759 579020 -8577099 + AluSg SINE Alu 19 279 -31 2052 144 25 63 chr1_random 579020 579125 -8576994 - MER7A DNA MER2_type -2929 109 1 27 0 0 0 chr1_random 580600 580627 -8575492 + AT_rich Low_complexity Low_complexity 1 27 0 429 309 67 10 chr1_random 580883 581077 -8575042 - MIR SINE MIR -57 205 1 301 291 12 0 chr1_random 581089 581175 -8574944 + L2 LINE L2 3185 3271 -1 511 153 34 0 chr1_random 581656 581752 -8574367 + MER5A DNA MER1_type 4 103 -86 392 0 0 20 chr1_random 582310 582359 -8573760 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 394 303 34 0 chr1_random 582740 582859 -8573260 - MIR SINE MIR -54 208 86 2892 239 19 14 chr1_random 582884 583528 -8572591 - MER82 DNA MER2_type -6 647 1 217 196 0 36 chr1_random 583552 583608 -8572511 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 1034 162 134 32 chr1_random 584261 584514 -8571605 - MER2 DNA MER2_type -26 319 41 231 305 119 0 chr1_random 584892 585010 -8571109 - MIR3 SINE MIR -6 202 71 313 336 10 0 chr1_random 585051 585155 -8570964 - 5S rRNA rRNA -2 119 15 259 231 264 0 chr1_random 586323 586414 -8569705 - L2 LINE L2 0 3272 3158 23 0 0 0 chr1_random 586435 586458 -8569661 + AT_rich Low_complexity Low_complexity 1 23 0 284 268 42 0 chr1_random 586638 586709 -8569410 - L2 LINE L2 -227 3045 2972 818 296 73 24 chr1_random 586776 587201 -8568918 - L2 LINE L2 -446 2868 2423 967 168 0 20 chr1_random 587685 587881 -8568238 - L1MB3 LINE L1 -1 6182 5991 2303 121 0 0 chr1_random 587934 588247 -8567872 + AluSq SINE Alu 1 313 0 1573 113 23 63 chr1_random 588508 588808 -8567311 - L1MB8 LINE L1 -2 6176 5889 202 270 261 27 chr1_random 589519 589630 -8566489 + L2 LINE L2 3116 3252 -20 * 228 262 125 59 chr1_random 589619 589677 -8566442 - MIR SINE MIR -22 186 133 3035 86 11 3 chr1_random 589677 590049 -8566070 - THE1C LTR MaLR 0 375 1 228 262 125 59 chr1_random 590049 590144 -8565975 - MIR SINE MIR -75 133 19 358 293 114 0 chr1_random 590338 590505 -8565614 + MIR SINE MIR 75 260 -2 248 311 107 16 chr1_random 591732 591854 -8564265 - MIR SINE MIR -6 256 124 196 289 0 0 chr1_random 591875 591927 -8564192 + MIR SINE MIR 162 213 -49 1925 215 57 27 chr1_random 642637 643196 -8512923 + Charlie2 DNA MER1_type 2041 2616 -246 472 273 21 7 chr1_random 643207 643350 -8512769 + Charlie2 DNA MER1_type 2717 2861 -1 732 226 18 0 chr1_random 643464 643628 -8512491 - L1ME LINE L1 -636 5528 5362 452 211 69 35 chr1_random 643640 643832 -8512287 - L1ME LINE L1 -725 5426 5274 267 263 0 134 chr1_random 643880 644089 -8512030 - L1P LINE L1 -2335 3811 3631 317 266 81 29 chr1_random 644368 644541 -8511578 - L1ME LINE L1 -2869 3277 3096 296 154 327 48 chr1_random 645214 645318 -8510801 + MER94 DNA DNA 2 134 0 297 286 103 32 chr1_random 646327 646453 -8509666 + MIR SINE MIR 20 154 -108 250 230 119 24 chr1_random 647903 648029 -8508090 + L1ME4a LINE L1 5715 5852 -269 25 31 0 0 chr1_random 648050 648082 -8508037 + AT_rich Low_complexity Low_complexity 1 32 0 182 208 19 0 chr1_random 648123 648176 -8507943 + GA-rich Low_complexity Low_complexity 3 56 0 347 213 78 35 chr1_random 648188 648329 -8507790 + L1ME4a LINE L1 5975 6121 0 212 270 6 0 chr1_random 648643 648802 -8507317 + (CCA)n Simple_repeat Simple_repeat 3 162 0 1490 272 16 65 chr1_random 649502 650103 -8506016 - L2 LINE L2 -4 3309 2724 322 324 67 52 chr1_random 650295 650638 -8505481 + LTR16C LTR ERVL 87 434 -57 358 270 161 0 chr1_random 650683 650820 -8505299 - MIR SINE MIR -102 160 2 499 294 127 4 chr1_random 651286 651514 -8504605 - MIR SINE MIR 0 262 7 214 420 28 14 chr1_random 653008 653151 -8502968 - L2 LINE L2 -26 3246 3102 534 208 71 66 chr1_random 653367 653579 -8502540 - ORSL DNA AcHobo -62 213 1 192 125 0 0 chr1_random 654996 655028 -8501091 + (TC)n Simple_repeat Simple_repeat 1 32 0 303 192 0 0 chr1_random 655072 655124 -8500995 - L2 LINE L2 -11 3261 3210 832 283 36 16 chr1_random 655133 655384 -8500735 - MIR SINE MIR -5 257 2 278 345 26 35 chr1_random 655442 655555 -8500564 - MIR SINE MIR -67 141 30 414 211 53 0 chr1_random 655942 656037 -8500082 - MER5A DNA MER1_type -77 112 13 225 274 148 44 chr1_random 658238 658373 -8497746 - MIR3 SINE MIR -15 193 45 2248 103 0 0 chr1_random 658924 659226 -8496893 + AluSx SINE Alu 6 307 -5 226 294 9 46 chr1_random 660571 660680 -8495439 + MER103 DNA DNA 19 123 -43 28 0 0 0 chr1_random 661507 661535 -8494584 + AT_rich Low_complexity Low_complexity 1 28 0 402 213 72 47 chr1_random 663215 663359 -8492760 - MIR SINE MIR -55 153 7 224 129 11 215 chr1_random 663427 663520 -8492599 + L2 LINE L2 3199 3272 0 347 174 210 0 chr1_random 665094 665206 -8490913 - MIR SINE MIR -10 252 115 395 259 81 27 chr1_random 666477 666662 -8489457 + MIR SINE MIR 20 214 -48 678 240 60 56 chr1_random 666673 666923 -8489196 + MIR SINE MIR 12 262 0 213 271 0 17 chr1_random 667244 667303 -8488816 + GA-rich Low_complexity Low_complexity 1 58 0 367 294 27 27 chr1_random 667582 667766 -8488353 + L1MCc LINE L1 26 209 -6214 730 176 5 104 chr1_random 667792 667985 -8488134 + MLT2B1 LTR ERVL 323 496 -24 320 178 50 0 chr1_random 668001 668102 -8488017 + (TA)n Simple_repeat Simple_repeat 1 106 0 180 0 0 0 chr1_random 668127 668147 -8487972 + (TA)n Simple_repeat Simple_repeat 2 21 0 1695 173 54 0 chr1_random 668251 668564 -8487555 + L1MD3 LINE L1 7654 7983 -12 1801 266 90 59 chr1_random 668570 670123 -8485996 + L1MCc LINE L1 1360 3138 -3984 1073 245 138 3 chr1_random 670129 670411 -8485708 + MLT1E LTR MaLR 8 327 -266 436 254 18 0 chr1_random 670458 670572 -8485547 - L1M4 LINE L1 -3733 2413 2298 1141 188 106 8 chr1_random 670572 670817 -8485302 - MLT1E LTR MaLR 0 593 325 658 167 50 8 chr1_random 670873 670993 -8485126 + MLT1E LTR MaLR 469 593 0 861 268 78 7 chr1_random 670993 671277 -8484842 + L1MCc LINE L1 3093 3396 -3545 * 2277 238 52 22 chr1_random 671274 672088 -8484031 + L1MEc LINE L1 1598 2435 -3961 192 188 0 0 chr1_random 672103 672135 -8483984 + MIR SINE MIR 229 260 -2 348 228 94 60 chr1_random 672515 672664 -8483455 + MIR SINE MIR 52 205 -57 204 125 0 0 chr1_random 673142 673174 -8482945 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 2586 113 8 3 chr1_random 673181 673534 -8482585 + THE1A LTR MaLR 1 355 0 12423 91 12 4 chr1_random 673535 675098 -8481021 + THE1A-int LTR MaLR 5 1580 0 2207 127 56 9 chr1_random 675098 675437 -8480682 + THE1A LTR MaLR 1 355 0 306 310 53 0 chr1_random 675658 675771 -8480348 + MIR SINE MIR 78 196 -66 616 152 0 0 chr1_random 676475 676567 -8479552 - AluJb SINE Alu -10 302 211 232 354 31 39 chr1_random 676780 676910 -8479209 + MER5A DNA MER1_type 56 184 -5 * 269 327 65 50 chr1_random 676909 677178 -8478941 + L2 LINE L2 2756 3035 -237 616 265 109 36 chr1_random 677713 677899 -8478220 - L1ME4a LINE L1 -3 6118 5900 2284 110 3 0 chr1_random 677899 678199 -8477920 - AluSx SINE Alu -11 301 1 616 265 109 36 chr1_random 678199 678314 -8477805 - L1ME4a LINE L1 -221 5900 5795 411 240 29 37 chr1_random 678554 678735 -8477384 - L1ME4a LINE L1 -353 5768 5599 341 293 43 12 chr1_random 678974 679187 -8476932 + MIR SINE MIR 2 262 0 670 221 38 32 chr1_random 680822 680980 -8475139 - MER5B DNA MER1_type -18 160 2 398 246 139 9 chr1_random 681086 681275 -8474844 + MIR SINE MIR 7 214 -48 247 259 0 0 chr1_random 681453 681507 -8474612 - MIR SINE MIR -14 248 195 503 287 53 25 chr1_random 681693 681914 -8474205 + MIR SINE MIR 24 248 -14 499 308 32 28 chr1_random 683354 683604 -8472515 - MER102b DNA MER1_type 0 341 91 399 341 37 7 chr1_random 683818 683953 -8472166 - MER91C DNA MER1_type -1 139 1 438 347 141 4 chr1_random 686261 686509 -8469610 + L2 LINE L2 2981 3262 -10 250 345 0 12 chr1_random 687903 687987 -8468132 - MER5B DNA MER1_type -69 109 27 482 253 167 0 chr1_random 688172 688322 -8467797 - MER5A DNA MER1_type -2 187 13 690 205 16 76 chr1_random 688344 688529 -8467590 + MER5B DNA MER1_type 2 175 -3 245 230 122 27 chr1_random 688807 688881 -8467238 + MLT1K LTR MaLR 470 550 -38 227 384 20 7 chr1_random 689083 689234 -8466885 + MIR SINE MIR 50 202 -60 279 274 226 0 chr1_random 689905 690007 -8466112 + L2 LINE L2 3188 3312 -1 591 314 71 13 chr1_random 690801 691040 -8465079 - MIR SINE MIR -6 256 4 219 69 0 0 chr1_random 691352 691381 -8464738 + (A)n Simple_repeat Simple_repeat 1 29 0 381 351 54 5 chr1_random 691951 692156 -8463963 - MIR SINE MIR 0 262 48 2195 158 93 5 chr1_random 692479 692503 -8463616 + L1MB3 LINE L1 5456 5476 -707 243 0 0 0 chr1_random 692503 692530 -8463589 + (CA)n Simple_repeat Simple_repeat 2 28 0 2195 158 93 5 chr1_random 692530 692915 -8463204 + L1MB3 LINE L1 5476 5901 -282 5035 72 48 9 chr1_random 692915 693580 -8462539 + L1PA10 LINE L1 5476 6166 -2 1668 170 28 3 chr1_random 693580 693857 -8462262 + L1MB3 LINE L1 5887 6181 -2 223 326 22 11 chr1_random 694214 694306 -8461813 + L3b LINE CR1 1359 1451 -132 2541 77 7 0 chr1_random 694897 695207 -8460912 - AluSq SINE Alu -1 312 1 261 317 33 17 chr1_random 696494 696614 -8459505 + MARNA DNA Mariner 380 501 -85 363 295 129 46 chr1_random 696868 697095 -8459024 + LTR40a LTR ERVL 135 452 -67 180 0 0 0 chr1_random 697095 697115 -8459004 + (TG)n Simple_repeat Simple_repeat 2 21 0 363 295 129 46 chr1_random 697115 697189 -8458930 + LTR40a LTR ERVL 452 518 -1 831 284 78 112 chr1_random 697598 698563 -8457556 + L3 LINE CR1 637 1568 -9 948 286 8 8 chr1_random 698954 699195 -8456924 - MIR SINE MIR -21 241 1 326 252 95 83 chr1_random 700673 700861 -8455258 - MIR SINE MIR -22 240 39 238 346 134 14 chr1_random 701296 701513 -8454606 - L3b LINE CR1 -53 1530 1288 246 325 103 77 chr1_random 702432 702850 -8453269 + L2 LINE L2 2819 3247 -25 189 0 0 0 chr1_random 703013 703034 -8453085 + (TAA)n Simple_repeat Simple_repeat 2 22 0 195 42 0 0 chr1_random 703483 703507 -8452612 + (GA)n Simple_repeat Simple_repeat 2 25 0 449 280 57 0 chr1_random 704195 704370 -8451749 + L1PBa LINE L1 6 190 -6673 14594 204 34 7 chr1_random 704395 705113 -8451006 + L1PBa LINE L1 670 1367 -5495 2051 188 96 31 chr1_random 705113 705571 -8450548 + LTR2B LTR ERV1 1 488 -2 14594 204 34 7 chr1_random 705571 709695 -8446424 + L1PBa LINE L1 1367 5799 -1063 23 0 0 0 chr1_random 709795 709818 -8446301 + AT_rich Low_complexity Low_complexity 1 23 0 630 135 56 8 chr1_random 709833 709959 -8446160 + MER41-int LTR ERV1 3724 3855 -2091 212 303 15 15 chr1_random 709970 710036 -8446083 - L3 LINE CR1 -3 1574 1509 * 1243 283 83 52 chr1_random 710029 710605 -8445514 + L2 LINE L2 2019 2612 -702 334 254 49 28 chr1_random 711284 711426 -8444693 - MIR SINE MIR -40 222 78 209 341 49 0 chr1_random 712298 712380 -8443739 + MIR SINE MIR 46 131 -77 479 252 9 0 chr1_random 713195 713310 -8442809 + L2 LINE L2 3198 3313 0 381 358 21 16 chr1_random 713341 713528 -8442591 - L3 LINE CR1 -17 1560 1373 183 278 46 65 chr1_random 713965 714073 -8442046 - L3 LINE CR1 -341 1236 1131 231 114 0 0 chr1_random 715551 715586 -8440533 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 361 292 23 15 chr1_random 717235 717365 -8438754 + MER94 DNA DNA 1 131 -3 382 221 57 82 chr1_random 717566 717688 -8438431 + MIR SINE MIR 7 125 -137 253 266 94 15 chr1_random 717894 718016 -8438103 - MIR SINE MIR -67 141 19 733 233 41 12 chr1_random 718197 718369 -8437750 + MIR SINE MIR 78 254 -8 2046 107 57 40 chr1_random 719051 719405 -8436714 - THE1C LTR MaLR -15 360 1 534 133 44 44 chr1_random 719470 719583 -8436536 + MIR3 SINE MIR 96 208 0 387 319 60 16 chr1_random 720520 720705 -8435414 + MIR SINE MIR 2 194 -68 1704 206 79 57 chr1_random 721947 722226 -8433893 - MLT1C LTR MaLR 0 467 173 2129 137 0 0 chr1_random 722226 722519 -8433600 - AluSg1 SINE Alu -16 293 1 1704 206 79 57 chr1_random 722519 722696 -8433423 - MLT1C LTR MaLR -294 173 1 684 285 80 50 chr1_random 722712 722887 -8433232 - L1MC4a LINE L1 -302 5819 5651 1457 164 5 182 chr1_random 722887 723331 -8432788 + MLT1A1 LTR MaLR 1 365 0 684 285 80 50 chr1_random 723331 723656 -8432463 - L1MC4a LINE L1 -470 5651 5304 238 273 0 0 chr1_random 723657 723712 -8432407 - L2 LINE L2 -4 3268 3214 27 62 0 0 chr1_random 723843 723891 -8432228 + AT_rich Low_complexity Low_complexity 1 48 0 304 323 79 24 chr1_random 724156 724320 -8431799 - LTR16C LTR ERVL 0 491 319 794 199 23 95 chr1_random 724644 724865 -8431254 + MER3 DNA MER1_type 1 205 -4 508 366 40 5 chr1_random 724978 725180 -8430939 - MIR SINE MIR -48 214 6 238 225 14 28 chr1_random 725233 725304 -8430815 - L1MC4a LINE L1 -1353 4793 4724 276 349 84 0 chr1_random 725481 725647 -8430472 - MLT1L LTR MaLR -108 507 328 281 324 9 19 chr1_random 726000 726108 -8430011 - MIR3 SINE MIR -1 207 101 2072 106 7 0 chr1_random 726233 726507 -8429612 - AluSx SINE Alu -13 299 24 258 264 98 83 chr1_random 726702 726784 -8429335 - L1ME4a LINE L1 -4 6117 6038 1610 191 0 32 chr1_random 726784 727093 -8429026 + AluJb SINE Alu 1 299 -13 2022 117 16 10 chr1_random 727096 727404 -8428715 + AluY SINE Alu 1 310 -1 258 264 98 83 chr1_random 727404 727714 -8428405 - L1ME4a LINE L1 -84 6037 5715 374 324 7 7 chr1_random 727731 727870 -8428249 - L1ME4a LINE L1 -476 5645 5507 24 0 0 0 chr1_random 728605 728629 -8427490 + AT_rich Low_complexity Low_complexity 1 24 0 342 358 74 0 chr1_random 729197 729345 -8426774 - MIR3 SINE MIR -14 194 36 393 345 50 53 chr1_random 729436 729758 -8426361 + L2 LINE L2 2932 3252 -20 260 339 31 31 chr1_random 730492 730622 -8425497 + MER5A DNA MER1_type 60 189 0 30 27 0 0 chr1_random 730646 730683 -8425436 + AT_rich Low_complexity Low_complexity 1 37 0 353 333 58 7 chr1_random 731859 731997 -8424122 - MIR3 SINE MIR -54 154 10 280 314 0 23 chr1_random 732963 733049 -8423070 + MIR SINE MIR 81 164 -98 288 296 74 56 chr1_random 733768 733930 -8422189 + MIR SINE MIR 63 227 -35 318 26 0 0 chr1_random 734526 734565 -8421554 + (TG)n Simple_repeat Simple_repeat 1 39 0 307 219 73 12 chr1_random 734992 735074 -8421045 + MIR3 SINE MIR 110 196 -12 955 176 101 10 chr1_random 735480 735679 -8420440 - MER20 DNA MER1_type -2 217 1 243 0 0 0 chr1_random 735939 735966 -8420153 + (CCA)n Simple_repeat Simple_repeat 3 29 0 412 290 31 57 chr1_random 736072 736265 -8419854 + MIR SINE MIR 29 216 -46 21 0 0 0 chr1_random 736947 736968 -8419151 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1_random 737120 737141 -8418978 + AT_rich Low_complexity Low_complexity 1 21 0 757 219 0 0 chr1_random 738119 738247 -8417872 + FLAM_C SINE Alu 1 128 -5 395 265 36 110 chr1_random 738306 738525 -8417594 - MIR SINE MIR -43 219 17 642 212 20 7 chr1_random 739860 740011 -8416108 - L1MA10 LINE L1 -8 6326 6174 2100 204 199 18 chr1_random 740023 740640 -8415479 - L1ME1 LINE L1 -168 5998 5270 * 4501 198 40 29 chr1_random 740621 740776 -8415343 - L1MB8 LINE L1 -3 6331 6179 306 0 0 0 chr1_random 740776 740810 -8415309 + (TG)n Simple_repeat Simple_repeat 2 35 0 4501 198 40 29 chr1_random 740810 742879 -8413240 - L1MB8 LINE L1 -155 6179 4231 1064 169 18 41 chr1_random 742882 743101 -8413018 + MER20 DNA MER1_type 1 214 -5 3797 274 70 67 chr1_random 743106 743739 -8412380 - L1MB8 LINE L1 -1910 4236 3606 2233 119 0 0 chr1_random 743739 744041 -8412078 - AluSg SINE Alu -8 302 1 3797 274 70 67 chr1_random 744041 745060 -8411059 - L1MB8 LINE L1 -2540 3606 2579 4054 247 68 25 chr1_random 745070 746323 -8409796 - L1MEc LINE L1 -5055 1341 35 262 317 8 50 chr1_random 746335 746455 -8409664 - MIR SINE MIR -71 191 77 1822 119 9 108 chr1_random 747669 748004 -8408115 + AluSg SINE Alu 1 302 -8 278 283 40 20 chr1_random 748053 748152 -8407967 + L2 LINE L2 2970 3070 -243 514 267 72 48 chr1_random 748180 748369 -8407750 + MIR SINE MIR 4 202 -60 423 145 26 0 chr1_random 748369 748445 -8407674 - MER116 DNA Mariner 0 80 3 514 267 72 48 chr1_random 748445 748506 -8407613 + MIR SINE MIR 202 260 -2 809 227 12 31 chr1_random 748527 748690 -8407429 - FRAM SINE Alu -17 159 1 352 296 37 30 chr1_random 748697 748832 -8407287 + L2 LINE L2 3163 3298 -15 31 88 0 0 chr1_random 748834 748914 -8407205 + AT_rich Low_complexity Low_complexity 1 80 0 2423 75 0 3 chr1_random 750080 750386 -8405733 - AluY SINE Alu -6 305 1 239 337 148 45 chr1_random 750393 750770 -8405349 + L2 LINE L2 2840 3255 -17 288 77 0 0 chr1_random 750775 750814 -8405305 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1736 170 3 11 chr1_random 751164 751479 -8404640 - AluJb SINE Alu 0 315 3 752 218 0 0 chr1_random 751819 751952 -8404167 - MER94 DNA DNA -1 133 1 237 211 0 0 chr1_random 752177 752229 -8403890 + (CA)n Simple_repeat Simple_repeat 1 52 0 180 296 0 37 chr1_random 752821 752875 -8403244 + L2 LINE L2 3031 3082 -190 203 277 133 24 chr1_random 753553 753704 -8402415 + MIR3 SINE MIR 34 207 -1 611 255 123 66 chr1_random 753878 754227 -8401892 + MLT1I LTR MaLR 41 409 0 596 282 76 40 chr1_random 755843 756101 -8400018 + MIR SINE MIR 3 261 -1 725 239 23 6 chr1_random 758211 758387 -8397732 - MIR SINE MIR -21 241 63 552 289 114 39 chr1_random 758387 758678 -8397441 + L1ME LINE L1 5475 5793 -371 1264 238 140 33 chr1_random 758907 759447 -8396672 + MLT1E3 LTR MaLR 14 624 0 2324 97 0 7 chr1_random 759642 759941 -8396178 + AluSq SINE Alu 1 297 -16 1807 91 11 40 chr1_random 759946 760055 -8396064 + L1MA2 LINE L1 6037 6148 -156 1632 176 7 4 chr1_random 760055 760334 -8395785 + AluJb SINE Alu 1 280 -32 185 0 0 39 chr1_random 760334 760360 -8395759 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1807 91 11 40 chr1_random 760360 760525 -8395594 + L1MA2 LINE L1 6146 6304 0 441 353 42 81 chr1_random 761690 762073 -8394046 + L2 LINE L2 2861 3228 -44 238 308 0 0 chr1_random 762094 762159 -8393960 + GA-rich Low_complexity Low_complexity 3 67 0 2041 233 6 53 chr1_random 763061 763083 -8393036 - MLT2B1 LTR ERVL 0 520 499 2103 162 113 10 chr1_random 763083 763471 -8392648 + MSTA LTR MaLR 1 428 0 2041 233 6 53 chr1_random 763471 763994 -8392125 - MLT2B1 LTR ERVL -21 499 1 327 357 32 0 chr1_random 764334 764491 -8391628 + L2 LINE L2 2871 3032 -240 1222 208 14 0 chr1_random 766184 766405 -8389714 - MER58A DNA MER1_type 0 224 1 1172 269 68 45 chr1_random 766561 766893 -8389226 + L2 LINE L2 2686 3049 -264 2416 95 3 0 chr1_random 766893 767197 -8388922 - AluSp SINE Alu -8 305 1 1172 269 68 45 chr1_random 767197 767469 -8388650 + L2 LINE L2 3049 3313 0 881 256 84 70 chr1_random 768493 768923 -8387196 + MLT1J2 LTR MaLR 1 436 -14 836 172 0 8 chr1_random 768931 769065 -8387054 - AluJo SINE Alu -178 134 2 2527 169 59 64 chr1_random 769523 770084 -8386035 - MER21B LTR ERV1 -12 851 294 214 162 0 0 chr1_random 770322 770359 -8385760 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 226 258 16 16 chr1_random 770609 770671 -8385448 + L3 LINE CR1 1441 1502 -75 200 111 28 0 chr1_random 771529 771565 -8384554 + (CA)n Simple_repeat Simple_repeat 2 38 0 688 266 122 21 chr1_random 772487 772724 -8383395 + MIR SINE MIR 2 262 0 2198 117 0 0 chr1_random 772815 773106 -8383013 + AluSg SINE Alu 1 291 -19 1112 232 134 26 chr1_random 774058 774476 -8381643 - MLT1C LTR MaLR 0 467 5 493 272 5 43 chr1_random 775846 776030 -8380089 + MER58C DNA MER1_type 39 215 0 300 308 176 19 chr1_random 776085 776244 -8379875 + MIR SINE MIR 1 184 -78 1714 169 4 4 chr1_random 776259 776563 -8379556 - AluJb SINE Alu 0 308 5 243 262 23 0 chr1_random 776765 776849 -8379270 - MIR SINE MIR -66 142 84 252 327 99 0 chr1_random 776922 777023 -8379096 - L2 LINE L2 0 3272 3162 1661 162 29 16 chr1_random 777167 777502 -8378617 + MER41B LTR ERV1 234 543 -11 643 210 0 74 chr1_random 778423 778468 -8377651 - MER5A DNA MER1_type -25 164 117 899 265 45 0 chr1_random 778468 778668 -8377451 + MER63A DNA MER1_type 2 210 0 643 210 0 74 chr1_random 778668 778778 -8377341 - MER5A DNA MER1_type -72 117 12 413 296 157 33 chr1_random 779211 779485 -8376634 - L2 LINE L2 0 3313 3006 519 250 36 62 chr1_random 780036 780228 -8375891 + MIR SINE MIR 20 206 -56 1208 208 48 13 chr1_random 780568 780799 -8375320 - MER8 DNA MER2_type 0 239 1 267 294 23 11 chr1_random 780816 780908 -8375211 + MER5A DNA MER1_type 21 102 -76 416 268 14 51 chr1_random 780975 781113 -8375006 + MIR SINE MIR 118 250 -12 308 282 26 0 chr1_random 781161 781239 -8374880 - MIR SINE MIR -72 136 57 2899 207 19 12 chr1_random 782378 782949 -8373170 - MER119 DNA MER1_type 0 583 9 254 315 174 24 chr1_random 783437 783650 -8372469 - MIR SINE MIR -16 246 2 519 171 0 23 chr1_random 783671 783759 -8372360 + FRAM SINE Alu 63 148 -28 290 67 22 0 chr1_random 783759 783804 -8372315 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 186 43 0 0 chr1_random 784533 784556 -8371563 + (TCC)n Simple_repeat Simple_repeat 3 25 0 1895 212 80 10 chr1_random 784565 785050 -8371069 - L1ME1 LINE L1 -30 6136 5618 * 4597 111 54 113 chr1_random 785049 786015 -8370104 - L1MA5A LINE L1 -1 6296 5388 1442 186 109 34 chr1_random 786010 786571 -8369548 - L1ME1 LINE L1 -570 5596 4987 * 2179 119 0 10 chr1_random 787312 787623 -8368496 + AluSx SINE Alu 1 308 -4 225 326 34 0 chr1_random 787799 787888 -8368231 + MIR SINE MIR 44 135 -73 207 253 46 23 chr1_random 788007 788094 -8368025 - L3b LINE CR1 -152 1431 1343 212 370 0 0 chr1_random 789611 789684 -8366435 - MIR SINE MIR -170 92 20 271 180 40 0 chr1_random 789840 789890 -8366229 - MIR SINE MIR -133 129 78 255 268 73 49 chr1_random 790885 790967 -8365152 - L2 LINE L2 -19 3294 3211 2466 196 54 38 chr1_random 792255 792419 -8363700 + MER97b DNA MER1_type? 221 381 -672 1965 154 3 0 chr1_random 792419 792717 -8363402 - AluSx SINE Alu -13 299 1 2466 196 54 38 chr1_random 792717 793104 -8363015 + MER97b DNA MER1_type? 381 781 -272 22 0 0 0 chr1_random 793109 793131 -8362988 + AT_rich Low_complexity Low_complexity 1 22 0 464 225 0 0 chr1_random 793462 793551 -8362568 + MER97c DNA MER1_type? 991 1079 -11 374 274 102 0 chr1_random 793564 793738 -8362381 - L1ME LINE L1 -729 5437 5248 2357 273 39 29 chr1_random 794013 794776 -8361343 + L1ME1 LINE L1 225 995 -5592 192 77 0 0 chr1_random 794778 794804 -8361315 + (A)n Simple_repeat Simple_repeat 1 26 0 13496 189 53 39 chr1_random 794812 799143 -8356976 + L1PA16 LINE L1 2 4367 -2482 222 37 0 0 chr1_random 799143 799170 -8356949 + (TAA)n Simple_repeat Simple_repeat 1 27 0 13496 189 53 39 chr1_random 799170 800539 -8355580 + L1PA16 LINE L1 4367 5715 -1134 4111 132 4 73 chr1_random 800539 801261 -8354858 + L1PA16 LINE L1 6177 6860 -9 436 268 25 6 chr1_random 801278 801435 -8354684 + L1ME1 LINE L1 1002 1161 -5426 454 234 16 24 chr1_random 801437 801561 -8354558 + L1PB4 LINE L1 6034 6156 0 * 1637 254 73 39 chr1_random 801550 802434 -8353685 + L1ME1 LINE L1 1118 2062 -4525 751 196 103 27 chr1_random 802504 802728 -8353391 + L1ME1 LINE L1 5294 5534 -872 2044 200 39 146 chr1_random 802730 803375 -8352744 + MER70B LTR ERVL 3 578 0 763 138 197 11 chr1_random 803379 803475 -8352644 + L1ME1 LINE L1 5533 5610 -2435 282 56 0 0 chr1_random 803475 803511 -8352608 + (CA)n Simple_repeat Simple_repeat 2 37 0 763 138 197 11 chr1_random 803511 803602 -8352517 + L1ME1 LINE L1 5610 5755 -2290 4457 119 113 129 chr1_random 803603 805029 -8351090 + pTR5 LTR ERV1 742 2436 -2 1897 282 45 35 chr1_random 805029 805856 -8350263 + L1ME1 LINE L1 5746 6549 -2 289 234 96 21 chr1_random 805879 806081 -8350038 - L1M4 LINE L1 -3819 2563 2345 21 0 0 0 chr1_random 806710 806731 -8349388 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr1_random 807124 807146 -8348973 + AT_rich Low_complexity Low_complexity 1 22 0 376 255 38 108 chr1_random 808393 808605 -8347514 + L2 LINE L2 3044 3240 -32 405 0 0 0 chr1_random 809794 809839 -8346280 + (CA)n Simple_repeat Simple_repeat 1 45 0 489 300 54 6 chr1_random 811215 811407 -8344712 + MIR SINE MIR 40 239 -23 187 228 123 0 chr1_random 811519 811576 -8344543 + MIR3 SINE MIR 108 171 -37 216 377 97 7 chr1_random 813040 813194 -8342925 - MER5A DNA MER1_type -15 174 7 525 250 97 34 chr1_random 814356 814598 -8341521 + L1MC4a LINE L1 5707 5966 -155 30 0 0 0 chr1_random 814721 814751 -8341368 + AT_rich Low_complexity Low_complexity 1 30 0 278 239 14 14 chr1_random 815270 815341 -8340778 + MIR SINE MIR 28 98 -164 188 319 43 14 chr1_random 815328 815397 -8340722 + L3 LINE CR1 1501 1571 -6 * 373 332 80 9 chr1_random 816241 816467 -8339652 + L2 LINE L2 2451 2692 -622 213 39 0 0 chr1_random 816550 816576 -8339543 + (CA)n Simple_repeat Simple_repeat 1 26 0 1817 132 52 85 chr1_random 1016825 1017248 -8138871 + HSMAR2 DNA Mariner 893 1301 -1 1450 298 32 14 chr1_random 1017255 1017728 -8138391 + MLT1F LTR MaLR 28 535 -7 512 248 143 0 chr1_random 1017768 1017901 -8138218 - Tigger3(Golem) DNA MER2_type -5 3024 2873 363 120 0 0 chr1_random 1017901 1017951 -8138168 - Tigger3(Golem) DNA MER2_type -103 2926 2877 5388 199 5 21 chr1_random 1018051 1019039 -8137080 + HERV3 LTR ERV1 7455 8426 0 1324 97 16 162 chr1_random 1019040 1019349 -8136770 + LTR61 LTR ERV1 1 264 -331 2883 328 46 10 chr1_random 1019474 1020612 -8135507 - HERV3 LTR ERV1 -4444 3312 2134 11206 100 4 4 chr1_random 1020723 1022316 -8133803 + L1P LINE L1 2607 4199 -1947 9345 90 34 1 chr1_random 1022416 1022607 -8133512 + L1P LINE L1 3484 3667 -2479 225 0 0 0 chr1_random 1022607 1022632 -8133487 + (CAA)n Simple_repeat Simple_repeat 3 27 0 9345 90 34 1 chr1_random 1022632 1023761 -8132358 + L1P LINE L1 3667 4847 -1299 1992 227 62 47 chr1_random 1023863 1024397 -8131722 - HERV3 LTR ERV1 -1037 7389 6848 9286 85 2 0 chr1_random 1024575 1026536 -8129583 - L1PA4 LINE L1 -8 6147 4178 478 218 89 146 chr1_random 1026643 1026869 -8129250 - L1M4 LINE L1 -845 5301 5117 1235 209 7 54 chr1_random 1026869 1027166 -8128953 - AluJo SINE Alu -29 283 1 478 218 89 146 chr1_random 1027166 1027431 -8128688 - L1M4 LINE L1 -1029 5117 4838 415 282 49 14 chr1_random 1027464 1027606 -8128513 - MER93b LTR ERV1 -224 149 3 1114 127 0 0 chr1_random 1027877 1028034 -8128085 - AluSg/x SINE Alu 0 312 156 1938 286 11 56 chr1_random 1028056 1028685 -8127434 - MER77 LTR ERV1 -2 603 3 937 264 97 13 chr1_random 1028913 1029296 -8126823 + L1ME3A LINE L1 5601 6015 -155 239 164 36 0 chr1_random 1029331 1029386 -8126733 + CT-rich Low_complexity Low_complexity 4 60 0 423 261 0 23 chr1_random 1029391 1029521 -8126598 + L1ME3A LINE L1 6041 6167 -3 2056 120 24 3 chr1_random 1029786 1030078 -8126041 - AluSp SINE Alu -15 298 1 9505 213 14 16 chr1_random 1030411 1034223 -8121896 + L1PA13 LINE L1 1 4044 -2753 2486 65 0 0 chr1_random 1035536 1035830 -8120289 - AluY SINE Alu -17 294 1 347 239 9 64 chr1_random 1036848 1036957 -8119162 + L1 LINE L1 3 105 -5850 508 255 0 0 chr1_random 1036957 1037063 -8119056 + FLAM_C SINE Alu 1 106 -37 267 247 55 14 chr1_random 1037063 1037136 -8118983 + L1 LINE L1 106 181 -5774 633 286 6 0 chr1_random 1037141 1037323 -8118796 + L1 LINE L1 4431 4613 -1421 610 326 99 12 chr1_random 1037363 1037697 -8118422 + L1MB3 LINE L1 459 821 -5134 7435 46 19 2 chr1_random 1037800 1038919 -8117200 + L1PA7 LINE L1 5017 6152 -2 2162 126 0 0 chr1_random 1040158 1040467 -8115652 + AluSc SINE Alu 1 309 0 4023 247 79 21 chr1_random 1041736 1043143 -8112976 + L1MB3 LINE L1 3210 4698 -1336 2263 104 0 0 chr1_random 1043378 1043677 -8112442 - AluY SINE Alu -12 299 1 297 152 15 30 chr1_random 1044008 1044074 -8112045 - L1 LINE L1 -1368 4778 4714 302 267 104 0 chr1_random 1048567 1048702 -8107417 - MER57A LTR ERV1 -6 397 249 26501 73 13 7 chr1_random 1048811 1053021 -8103098 + Harlequin LTR ERV1 2613 6896 0 2078 176 66 29 chr1_random 1053040 1053482 -8102637 + LTR2B LTR ERV1 32 489 -1 6632 89 26 16 chr1_random 1053482 1054133 -8101986 + L1PA11 LINE L1 4844 5487 -687 1897 153 6 19 chr1_random 1054133 1054447 -8101672 + AluSx SINE Alu 3 312 0 6632 89 26 16 chr1_random 1054447 1055121 -8100998 + L1PA11 LINE L1 5487 6174 0 378 245 103 58 chr1_random 1055499 1055580 -8100539 + L1MDa LINE L1 118 194 -6346 270 0 0 0 chr1_random 1055580 1055610 -8100509 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 378 245 103 58 chr1_random 1055610 1055789 -8100330 + L1MDa LINE L1 194 390 -6150 534 286 56 31 chr1_random 1056071 1056267 -8099852 - LTR53 LTR ERVL 0 519 319 1487 246 42 59 chr1_random 1056325 1056732 -8099387 - L1M4 LINE L1 -5082 1460 1067 740 222 54 18 chr1_random 1056732 1056899 -8099220 - FAM SINE Alu -2 173 1 1487 246 42 59 chr1_random 1056899 1057138 -8098981 - L1M4 LINE L1 -5475 1067 825 2153 106 0 23 chr1_random 1057147 1057448 -8098671 - AluSc SINE Alu -15 294 1 2145 203 25 9 chr1_random 1057948 1058386 -8097733 + MER31A LTR ERV1 32 476 -9 4048 187 69 36 chr1_random 1058797 1059870 -8096249 + L1MB3 LINE L1 4968 6070 -1 253 235 113 59 chr1_random 1059895 1059921 -8096198 - L1M4 LINE L1 -786 5360 5337 1971 134 53 39 chr1_random 1059921 1060280 -8095839 + THE1B LTR MaLR 1 364 0 253 235 113 59 chr1_random 1060280 1060474 -8095645 - L1M4 LINE L1 -809 5337 5128 767 209 18 0 chr1_random 1060489 1060652 -8095467 + L1MB3 LINE L1 6017 6182 -1 1655 155 35 76 chr1_random 1060864 1061232 -8094887 - THE1B LTR MaLR -7 357 5 10877 119 40 3 chr1_random 1061236 1062365 -8093754 - THE1B-int LTR MaLR 0 1580 378 2126 134 0 0 chr1_random 1062365 1062656 -8093463 - AluSq SINE Alu -22 291 1 10877 119 40 3 chr1_random 1062656 1063049 -8093070 - THE1B-int LTR MaLR -1202 378 1 2071 140 30 38 chr1_random 1063049 1063414 -8092705 - THE1B LTR MaLR 0 364 3 1454 322 44 50 chr1_random 1069661 1070426 -8085693 - PRIMA41-int LTR ERV1 -5727 2029 1269 743 299 0 0 chr1_random 1071381 1071555 -8084564 - MER41D LTR ERV1 0 557 384 9624 307 29 15 chr1_random 1071806 1073464 -8082655 + MER89-int LTR ERV1 2856 4489 -3267 2418 102 30 30 chr1_random 1073464 1073674 -8082445 - THE1B LTR MaLR 0 364 152 2116 90 0 0 chr1_random 1073674 1073964 -8082155 + AluSx SINE Alu 23 312 0 2418 102 30 30 chr1_random 1073964 1074117 -8082002 - THE1B LTR MaLR -211 153 1 9624 307 29 15 chr1_random 1074117 1075720 -8080399 + MER89-int LTR ERV1 4489 6163 -1593 252 304 123 23 chr1_random 1080368 1080539 -8075580 + MIR SINE MIR 51 238 -24 2008 131 3 0 chr1_random 1081544 1081841 -8074278 - AluY SINE Alu -13 298 1 732 193 37 0 chr1_random 1082422 1082583 -8073536 - L1MB3 LINE L1 0 6183 6017 354 261 109 42 chr1_random 1082595 1082760 -8073359 + L1M4 LINE L1 5128 5303 -843 2342 76 7 0 chr1_random 1082762 1083065 -8073054 + AluSp SINE Alu 1 305 -8 238 333 40 10 chr1_random 1083074 1083173 -8072946 - MIR SINE MIR -150 112 11 2687 115 22 0 chr1_random 1083537 1083903 -8072216 - Charlie3 DNA MER1_type -4 2706 2333 3698 166 45 19 chr1_random 1084301 1085029 -8071090 + HSMAR2 DNA Mariner 2 748 -554 1614 276 57 79 chr1_random 1085129 1086118 -8070001 + MER89-int LTR ERV1 520 1486 -5315 286 321 73 31 chr1_random 1086571 1086858 -8069261 - L2 LINE L2 -179 3134 2836 495 236 197 54 chr1_random 1086910 1087233 -8068886 - MLT1E LTR MaLR -29 564 169 1201 247 60 24 chr1_random 1087377 1087713 -8068406 + MLT1A1 LTR MaLR 1 348 -17 306 247 3 0 chr1_random 1087714 1087785 -8068334 - MLT1E LTR MaLR -406 161 90 234 308 68 14 chr1_random 1087823 1087969 -8068150 - L2 LINE L2 -517 2797 2644 193 309 55 18 chr1_random 1087884 1087994 -8068125 - MIR3 SINE MIR -17 191 78 * 234 328 53 15 chr1_random 1088094 1088225 -8067894 - MIR SINE MIR -54 208 73 1166 198 0 30 chr1_random 1088864 1089101 -8067018 - AluJo SINE Alu -27 285 56 268 186 0 43 chr1_random 1089102 1089172 -8066947 - L1M2 LINE L1 -4333 2516 2450 2583 226 75 29 chr1_random 1089674 1090446 -8065673 - L1PA12 LINE L1 -6231 1350 7 977 221 9 0 chr1_random 1091185 1091411 -8064708 + L1 LINE L1 2427 2654 -3492 407 203 0 13 chr1_random 1091849 1091928 -8064191 - FRAM SINE Alu -17 149 72 274 239 10 132 chr1_random 1093013 1093210 -8062909 + MER53 DNA DNA 5 177 -12 6707 113 31 12 chr1_random 1093210 1094338 -8061781 - L1MA1 LINE L1 -1 6301 5167 5617 159 22 86 chr1_random 1094347 1095999 -8060120 - L1PB1 LINE L1 0 6151 4519 1124 162 0 0 chr1_random 1095999 1096178 -8059941 - AluSp SINE Alu 0 313 135 5617 159 22 86 chr1_random 1096178 1096618 -8059501 - L1PB1 LINE L1 -1632 4519 4052 710 230 75 0 chr1_random 1096723 1096949 -8059170 + L1 LINE L1 4208 4450 -1696 1143 198 45 4 chr1_random 1097175 1097417 -8058702 + AluJo SINE Alu 4 255 -57 850 220 149 41 chr1_random 1097564 1097932 -8058187 - MER21B LTR ERV1 -57 806 399 1469 213 85 39 chr1_random 1097940 1098174 -8057945 + MER92B LTR ERV1 33 255 -381 751 81 54 121 chr1_random 1098174 1098323 -8057796 + MER85 DNA T2_type 1 139 0 1469 213 85 39 chr1_random 1098323 1098595 -8057524 + MER92B LTR ERV1 255 562 -74 596 0 0 38 chr1_random 1098615 1098694 -8057425 + L1PA3 LINE L1 6080 6155 0 210 136 0 0 chr1_random 1098735 1098779 -8057340 + (A)n Simple_repeat Simple_repeat 1 44 0 223 238 19 95 chr1_random 1100035 1100140 -8055979 + L2 LINE L2 3115 3211 -61 2310 52 10 16 chr1_random 1100401 1100707 -8055412 + AluY SINE Alu 1 304 -7 886 184 14 48 chr1_random 1100889 1101096 -8055023 + AluJo SINE Alu 91 290 -22 2275 91 0 0 chr1_random 1101098 1101407 -8054712 + AluSc SINE Alu 1 309 0 2142 87 3 13 chr1_random 1101429 1101740 -8054379 + AluSg SINE Alu 1 308 -2 1173 254 49 27 chr1_random 1102008 1102378 -8053741 + MER93a LTR ERV1 1 378 -24 254 219 83 10 chr1_random 1103479 1103575 -8052544 - LTR24B LTR ERV1 -6 570 468 * 1647 166 103 3 chr1_random 1103542 1103880 -8052239 - LTR23 LTR ERV1 -44 401 2 225 174 0 0 chr1_random 1104090 1104136 -8051983 + (CA)n Simple_repeat Simple_repeat 1 46 0 239 218 10 0 chr1_random 1104148 1104249 -8051870 + GA-rich Low_complexity Low_complexity 1 102 0 180 97 0 0 chr1_random 1104921 1104952 -8051167 + (CCCCG)n Simple_repeat Simple_repeat 5 35 0 913 90 0 8 chr1_random 1105159 1105281 -8050838 - 5S rRNA rRNA 0 121 1 234 0 0 0 chr1_random 1106071 1106097 -8050022 + (CA)n Simple_repeat Simple_repeat 1 26 0 296 261 6 0 chr1_random 1106105 1106262 -8049857 + GA-rich Low_complexity Low_complexity 1 158 0 304 226 16 0 chr1_random 1106314 1106438 -8049681 + GA-rich Low_complexity Low_complexity 2 127 0 207 182 0 0 chr1_random 1107045 1107089 -8049030 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 238 13 13 chr1_random 1107110 1107261 -8048858 + GA-rich Low_complexity Low_complexity 1 151 0 2567 136 147 4 chr1_random 1108111 1108588 -8047531 - LTR61 LTR ERV1 0 595 51 2271 87 17 15 chr1_random 1108748 1109266 -8046853 - Harlequin LTR ERV1 -4498 2398 1814 * 5137 132 49 50 chr1_random 1109256 1110674 -8045445 - Harlequin LTR ERV1 -5487 1409 1 896 185 116 32 chr1_random 1110674 1111059 -8045060 - LTR2B LTR ERV1 0 490 1 21 71 0 0 chr1_random 1111106 1111148 -8044971 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr1_random 1111265 1111307 -8044812 + AT_rich Low_complexity Low_complexity 1 42 0 2389 118 12 3 chr1_random 1111510 1111856 -8044263 - MER9 LTR ERVK -162 349 1 21 57 0 0 chr1_random 1112137 1112172 -8043947 + AT_rich Low_complexity Low_complexity 1 35 0 310 263 0 21 chr1_random 1112859 1112954 -8043165 + CT-rich Low_complexity Low_complexity 2 94 0 233 232 0 14 chr1_random 1113556 1113625 -8042494 + MER57A LTR ERV1 332 399 -4 5490 160 49 18 chr1_random 1114212 1115960 -8040159 - L1PA13 LINE L1 -1 6162 4345 2407 101 0 0 chr1_random 1115960 1116267 -8039852 - AluSg SINE Alu -3 307 1 5490 160 49 18 chr1_random 1116267 1116556 -8039563 - L1PA13 LINE L1 -1818 4345 4066 767 265 0 0 chr1_random 1117255 1117406 -8038713 + FAM SINE Alu 2 152 -33 624 282 54 48 chr1_random 1117458 1117791 -8038328 - L1MDb LINE L1 -5905 504 170 1582 238 80 61 chr1_random 1118273 1118801 -8037318 - L1MB7 LINE L1 -206 5978 5433 1725 164 3 14 chr1_random 1118801 1119093 -8037026 - AluJb SINE Alu -23 289 1 1582 238 80 61 chr1_random 1119093 1119237 -8036882 - L1MB7 LINE L1 -751 5433 5293 2319 100 0 0 chr1_random 1119258 1119559 -8036560 - AluY SINE Alu -10 301 1 894 248 100 38 chr1_random 1119602 1120102 -8036017 - L1MB7 LINE L1 -1746 4400 3870 351 229 93 0 chr1_random 1120123 1120241 -8035878 - L1MA10 LINE L1 -8 6326 6198 3766 193 26 63 chr1_random 1120420 1121426 -8034693 - LTR5 LTR ERVK 0 969 1 314 285 55 11 chr1_random 1121426 1121601 -8034518 - L1MB7 LINE L1 -2548 3598 3418 432 184 54 6 chr1_random 1122077 1122245 -8033874 + (TA)n Simple_repeat Simple_repeat 1 176 0 25 31 0 0 chr1_random 1123461 1123493 -8032626 + AT_rich Low_complexity Low_complexity 1 32 0 498 175 10 19 chr1_random 1123972 1124075 -8032044 + FRAM SINE Alu 74 175 -1 877 181 5 80 chr1_random 1124175 1124250 -8031869 + MER5A DNA MER1_type 1 80 -109 2337 104 7 0 chr1_random 1124250 1124559 -8031560 + AluSq SINE Alu 1 311 -2 877 181 5 80 chr1_random 1124559 1124682 -8031437 + MER5A DNA MER1_type 80 184 -5 2621 53 0 0 chr1_random 1126166 1126470 -8029649 + AluY SINE Alu 1 304 -7 285 288 69 19 chr1_random 1127130 1127290 -8028829 - L2 LINE L2 0 3313 3146 918 136 0 0 chr1_random 1127742 1127867 -8028252 + FLAM_C SINE Alu 1 125 -18 202 312 40 53 chr1_random 1128306 1128607 -8027512 + L2 LINE L2 1802 2098 -1216 693 134 0 0 chr1_random 1128730 1128827 -8027292 + MSTC LTR MaLR 1 97 -331 7044 133 39 6 chr1_random 1128828 1129896 -8026223 + ERVL-B2 LTR ERVL 4654 5757 -7 1951 186 164 24 chr1_random 1129896 1130284 -8025835 + MLT2B2 LTR ERVL 1 462 -53 1632 164 3 56 chr1_random 1130284 1130588 -8025531 + AluJb SINE Alu 1 288 -24 1951 186 164 24 chr1_random 1130588 1130651 -8025468 + MLT2B2 LTR ERVL 462 515 0 2288 97 31 16 chr1_random 1131238 1131557 -8024562 - THE1B LTR MaLR -40 324 1 2100 95 53 0 chr1_random 1131742 1132026 -8024093 - AluSx SINE Alu -13 299 1 284 339 163 20 chr1_random 1133050 1133454 -8022665 + L2 LINE L2 2848 3309 -4 4473 151 11 25 chr1_random 1134076 1134250 -8021869 - MER50 LTR ERV1 0 734 559 2384 88 0 0 chr1_random 1134250 1134544 -8021575 + AluSx SINE Alu 1 294 -18 4473 151 11 25 chr1_random 1134544 1135113 -8021006 - MER50 LTR ERV1 -175 559 2 317 276 52 81 chr1_random 1135235 1135409 -8020710 + MLT1K LTR MaLR 9 177 -411 492 185 67 42 chr1_random 1135523 1135642 -8020477 + LTR67 LTR ERVL 428 549 -8 691 265 14 19 chr1_random 1136687 1136902 -8019217 - LTR67 LTR ERVL -9 548 335 1522 189 35 14 chr1_random 1137133 1137419 -8018700 - AluJo SINE Alu -20 292 1 722 205 13 19 chr1_random 1137427 1137583 -8018536 - AluJb SINE Alu -2 310 156 1192 176 9 19 chr1_random 1137584 1137794 -8018325 - AluJo SINE Alu -104 208 1 1792 155 32 0 chr1_random 1137825 1138103 -8018016 + AluJb SINE Alu 1 287 -25 2003 113 47 0 chr1_random 1138114 1138388 -8017731 + AluSx SINE Alu 1 287 -25 213 264 0 0 chr1_random 1138388 1138460 -8017659 + (TA)n Simple_repeat Simple_repeat 1 72 0 581 158 109 150 chr1_random 1138481 1138728 -8017391 + LTR16A1 LTR ERVL 1 237 -220 249 229 46 73 chr1_random 1138740 1138849 -8017270 + LTR16A1 LTR ERVL 340 445 -12 467 299 70 50 chr1_random 1139242 1139701 -8016418 - L2 LINE L2 -423 2891 2424 207 298 0 0 chr1_random 1139919 1139976 -8016143 + G-rich Low_complexity Low_complexity 3 59 0 2084 132 3 3 chr1_random 1140299 1140603 -8015516 - AluSx SINE Alu -8 304 1 945 184 23 6 chr1_random 1140659 1140833 -8015286 - AluJo SINE Alu -65 247 71 266 350 113 33 chr1_random 1140949 1141243 -8014876 + L2 LINE L2 2614 2940 -374 2078 108 29 29 chr1_random 1141243 1141550 -8014569 + AluSq SINE Alu 1 307 -6 266 350 113 33 chr1_random 1141550 1141592 -8014527 + L2 LINE L2 2940 2977 -337 1150 148 26 148 chr1_random 1142027 1142366 -8013753 - AluJo SINE Alu -3 299 2 21 0 0 0 chr1_random 1142366 1142387 -8013732 + AT_rich Low_complexity Low_complexity 1 21 0 1588 103 0 0 chr1_random 1142406 1142609 -8013510 - AluSg SINE Alu -107 203 1 636 274 6 6 chr1_random 1142975 1143154 -8012965 - Tigger8 DNA MER2_type -154 512 334 2346 106 0 0 chr1_random 1143243 1143544 -8012575 + AluSx SINE Alu 1 301 -11 991 288 83 73 chr1_random 1143993 1144020 -8012099 - L2 LINE L2 -1 3312 3287 1568 148 45 71 chr1_random 1144020 1144330 -8011789 + AluJo SINE Alu 1 302 -10 991 288 83 73 chr1_random 1144330 1144545 -8011574 - L2 LINE L2 -26 3287 3076 1777 184 14 0 chr1_random 1144545 1144839 -8011280 + AluJb SINE Alu 1 298 -14 991 288 83 73 chr1_random 1144839 1145160 -8010959 - L2 LINE L2 -237 3076 2760 1839 147 10 10 chr1_random 1145160 1145460 -8010659 - AluJb SINE Alu -12 300 1 991 288 83 73 chr1_random 1145460 1145482 -8010637 - L2 LINE L2 -553 2760 2740 1707 181 7 3 chr1_random 1145482 1145769 -8010350 - AluJo SINE Alu -24 288 1 991 288 83 73 chr1_random 1145769 1146238 -8009881 - L2 LINE L2 -573 2740 2251 750 182 0 0 chr1_random 1146733 1146865 -8009254 + FLAM_A SINE Alu 2 133 0 233 136 68 0 chr1_random 1146990 1147034 -8009085 + L2 LINE L2 3265 3311 -2 1021 245 87 19 chr1_random 1147337 1147560 -8008559 - L1M4 LINE L1 -1287 4859 4653 2011 124 28 0 chr1_random 1147560 1147850 -8008269 - AluSx SINE Alu -14 298 1 1021 245 87 19 chr1_random 1147850 1148038 -8008081 - L1M4 LINE L1 -1493 4653 4420 565 251 162 28 chr1_random 1148041 1148220 -8007899 + MER63A DNA MER1_type 3 205 -5 1281 151 23 32 chr1_random 1148315 1148533 -8007586 - AluJo SINE Alu -13 299 84 243 264 22 11 chr1_random 1148539 1148630 -8007489 - L1MEc LINE L1 -5642 754 663 2211 125 0 3 chr1_random 1152800 1153112 -8003007 + AluSq SINE Alu 1 311 -2 533 221 0 66 chr1_random 1153707 1153843 -8002276 - FLAM_A SINE Alu -6 127 1 1674 350 54 12 chr1_random 1154538 1154947 -8001172 + MSTA LTR MaLR 3 428 0 9221 153 14 36 chr1_random 1154951 1156542 -7999577 + MSTA-int LTR MaLR 19 1574 -6 2095 139 128 28 chr1_random 1156547 1156936 -7999183 + MSTA LTR MaLR 1 428 0 184 354 46 0 chr1_random 1157193 1157323 -7998796 - L2 LINE L2 -907 2407 2272 716 218 0 0 chr1_random 1157408 1157541 -7998578 + FLAM_A SINE Alu 1 133 0 517 325 104 35 chr1_random 1157741 1158327 -7997792 - L2 LINE L2 -47 3266 2623 13269 117 12 18 chr1_random 1158334 1161025 -7995094 + L1P3 LINE L1 1 2720 -3741 180 0 0 0 chr1_random 1161025 1161045 -7995074 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13269 117 12 18 chr1_random 1161045 1161820 -7994299 + L1P3 LINE L1 2720 3498 -2963 23 33 0 0 chr1_random 1162158 1162188 -7993931 + AT_rich Low_complexity Low_complexity 1 30 0 6166 98 23 0 chr1_random 1162354 1163627 -7992492 - L1PA13 LINE L1 0 6163 4877 318 221 26 0 chr1_random 1163632 1163709 -7992410 - AluJ/FRAM SINE Alu 0 302 224 8136 168 13 13 chr1_random 1163709 1165217 -7990902 - L1P LINE L1 -1271 4875 3368 311 341 85 12 chr1_random 1165354 1165518 -7990601 - MER57B LTR ERV1 -249 185 10 1089 211 50 0 chr1_random 1166675 1166893 -7989226 + ERVL LTR ERVL 2833 3061 -2703 1028 189 26 5 chr1_random 1166895 1167086 -7989033 - ERVL LTR ERVL -1974 3790 3596 6337 201 26 9 chr1_random 1167086 1168332 -7987787 + ERVL LTR ERVL 3070 4336 -1428 290 234 178 9 chr1_random 1168821 1168928 -7987191 - MER92B LTR ERV1 -414 222 98 213 65 0 0 chr1_random 1168934 1168965 -7987154 + (TTTTTG)n Simple_repeat Simple_repeat 3 33 0 1896 117 81 39 chr1_random 1169038 1169398 -7986721 - THE1C LTR MaLR 0 375 1 861 274 100 26 chr1_random 1169409 1169703 -7986416 + MER21B LTR ERV1 402 732 -131 938 47 78 16 chr1_random 1169703 1169726 -7986393 + MER85 DNA T2_type 1 21 -118 2136 84 0 4 chr1_random 1169726 1170000 -7986119 - AluY SINE Alu -15 296 24 938 47 78 16 chr1_random 1170000 1170105 -7986014 + MER85 DNA T2_type 21 137 -2 861 274 100 26 chr1_random 1170105 1170189 -7985930 + MER21B LTR ERV1 732 808 -55 1211 226 43 72 chr1_random 1170737 1171183 -7984936 - LTR56 LTR ERV1 0 445 13 1511 220 25 0 chr1_random 1171183 1171465 -7984654 + AluJo SINE Alu 2 290 -22 4818 152 54 21 chr1_random 1171907 1172781 -7983338 + MER4D LTR ERV1 1 903 0 883 230 68 14 chr1_random 1172922 1173144 -7982975 - MER21B LTR ERV1 -627 236 3 313 276 23 0 chr1_random 1173383 1173470 -7982649 + L2 LINE L2 3184 3272 0 498 299 29 25 chr1_random 1173515 1173719 -7982400 + MIR SINE MIR 55 259 -3 29 47 0 0 chr1_random 1173836 1173879 -7982240 + AT_rich Low_complexity Low_complexity 1 43 0 1052 191 98 20 chr1_random 1174474 1174720 -7981399 + L1M1 LINE L1 15 279 -7286 5311 122 29 5 chr1_random 1174725 1175487 -7980632 - LTR17 LTR ERV1 0 780 1 2451 55 0 0 chr1_random 1175487 1175779 -7980340 - HERV17 LTR ERV1 0 8626 8335 * 16876 57 4 7 chr1_random 1175769 1177822 -7978297 - HERV17 LTR ERV1 -1078 7548 5503 11121 177 83 25 chr1_random 1177928 1181566 -7974553 - L1PBa LINE L1 -2951 3911 6 21 0 0 0 chr1_random 1182225 1182246 -7973873 + AT_rich Low_complexity Low_complexity 1 21 0 301 263 32 124 chr1_random 1182319 1182536 -7973583 + MLT1D LTR MaLR 1 197 -308 233 29 0 29 chr1_random 1182795 1182830 -7973289 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr1_random 1183198 1183226 -7972893 + AT_rich Low_complexity Low_complexity 1 28 0 1468 241 90 37 chr1_random 1185166 1185536 -7970583 + L1M4 LINE L1 3396 3810 -2336 730 235 19 12 chr1_random 1185536 1185698 -7970421 + FRAM SINE Alu 1 163 -3 1468 241 90 37 chr1_random 1185698 1185917 -7970202 + L1M4 LINE L1 3810 4016 -2130 2424 78 10 0 chr1_random 1187825 1188131 -7967988 + AluSg SINE Alu 1 309 -1 26 0 0 0 chr1_random 1188391 1188417 -7967702 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1_random 1190435 1190456 -7965663 + GC_rich Low_complexity Low_complexity 1 21 0 777 265 96 28 chr1_random 1194031 1194322 -7961797 + MER58B DNA MER1_type 28 338 -3 185 303 0 0 chr1_random 1195883 1195949 -7960170 - L2 LINE L2 -1173 2141 2076 1206 279 62 28 chr1_random 1196656 1197193 -7958926 - L1M4 LINE L1 -5463 1079 525 423 171 0 0 chr1_random 1198337 1198407 -7957712 + MER31A LTR ERV1 27 96 -389 10557 118 40 23 chr1_random 1198407 1199917 -7956202 + L1P3 LINE L1 669 2240 -4221 1390 58 0 0 chr1_random 1199917 1200091 -7956028 - L1PA5 LINE L1 0 6154 5981 10557 118 40 23 chr1_random 1200091 1200740 -7955379 + L1P3 LINE L1 2240 2876 -3585 4863 90 10 24 chr1_random 1251142 1251862 -7904257 - HERV17 LTR ERV1 -7915 711 2 5348 116 33 7 chr1_random 1251862 1252622 -7903497 - LTR17 LTR ERV1 0 780 1 7705 207 16 6 chr1_random 1252624 1254148 -7901971 + L1M1 LINE L1 283 1822 -5743 1060 242 40 66 chr1_random 1254150 1254575 -7901544 + MER67C LTR ERV1 21 434 -276 405 0 0 0 chr1_random 1254578 1254623 -7901496 + (TG)n Simple_repeat Simple_repeat 2 46 0 2291 101 0 12 chr1_random 1254623 1254950 -7901169 - MER48 LTR ERV1 -64 323 1 6925 80 29 4 chr1_random 1254950 1255931 -7900188 - HERVH48 LTR ERV1 0 6654 5650 * 21418 138 46 25 chr1_random 1255904 1260286 -7895833 - HERVH48 LTR ERV1 -2382 4147 1 857 90 41 0 chr1_random 1260286 1260408 -7895711 - MER48 LTR ERV1 0 387 261 488 226 27 0 chr1_random 1260469 1260615 -7895504 + MER67C LTR ERV1 547 696 -14 218 211 19 0 chr1_random 1262216 1262226 -7893893 + (TAG)n Simple_repeat Simple_repeat 1 9 -44 207 0 0 0 chr1_random 1262226 1262249 -7893870 + (GGA)n Simple_repeat Simple_repeat 3 25 0 218 211 19 0 chr1_random 1262249 1262290 -7893829 + (TAG)n Simple_repeat Simple_repeat 9 53 0 21 0 0 0 chr1_random 1262358 1262379 -7893740 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1_random 1262700 1262725 -7893394 + AT_rich Low_complexity Low_complexity 1 25 0 2318 87 10 13 chr1_random 1262913 1263224 -7892895 - AluSx SINE Alu -2 310 1 214 260 10 106 chr1_random 1263320 1263424 -7892695 + MIR SINE MIR 155 248 -14 210 315 173 12 chr1_random 1263632 1263794 -7892325 + MER5A DNA MER1_type 2 189 0 363 301 61 25 chr1_random 1263802 1263965 -7892154 - MER5B DNA MER1_type -1 177 9 583 222 59 23 chr1_random 1264752 1264973 -7891146 - L1MC4 LINE L1 -533 7509 7281 370 354 140 0 chr1_random 1265110 1265274 -7890845 + MER5A DNA MER1_type 2 188 -1 2034 100 0 15 chr1_random 1266067 1266336 -7889783 + AluSq SINE Alu 38 302 -11 3271 229 95 20 chr1_random 1267330 1267535 -7888584 - L1MA9 LINE L1 -25 6175 5987 1695 142 0 48 chr1_random 1267535 1267824 -7888295 + AluSx SINE Alu 25 299 -13 3271 229 95 20 chr1_random 1267824 1268340 -7887779 - L1MA9 LINE L1 -213 5987 5511 2106 137 3 0 chr1_random 1268340 1268625 -7887494 - AluSq SINE Alu -27 286 1 3271 229 95 20 chr1_random 1268625 1268829 -7887290 - L1MA9 LINE L1 -689 5511 5324 186 43 0 0 chr1_random 1268829 1268852 -7887267 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3271 229 95 20 chr1_random 1268852 1269974 -7886145 - L1MA9 LINE L1 -876 5324 3978 839 296 96 61 chr1_random 1269982 1270721 -7885398 - L1MA9 LINE L1 -5095 860 96 663 219 8 0 chr1_random 1270721 1270849 -7885270 - FLAM_C SINE Alu -14 129 1 447 228 0 10 chr1_random 1270853 1270954 -7885165 - L1MA9 LINE L1 -5854 101 2 419 278 98 39 chr1_random 1271198 1271514 -7884605 - L1M4c LINE L1 -3771 2611 2273 415 238 76 12 chr1_random 1271517 1271689 -7884430 - L1M4c LINE L1 -4161 2223 2041 818 305 10 17 chr1_random 1271811 1272237 -7883882 - L1M4c LINE L1 -4486 1896 1394 393 301 93 19 chr1_random 1272278 1272643 -7883476 - L1M4c LINE L1 -4823 1480 1089 272 369 34 27 chr1_random 1272964 1273227 -7882892 - L1M4c LINE L1 -5625 678 414 29 94 0 0 chr1_random 1275378 1275463 -7880656 + AT_rich Low_complexity Low_complexity 1 85 0 1342 254 62 17 chr1_random 1275994 1276400 -7879719 + MSTB LTR MaLR 1 424 -2 22 35 0 0 chr1_random 1277072 1277101 -7879018 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr1_random 1278102 1278137 -7877982 + AT_rich Low_complexity Low_complexity 1 35 0 804 234 84 40 chr1_random 1278711 1279091 -7877028 - L1MA8 LINE L1 -4 6287 5891 * 2607 235 92 2 chr1_random 1279085 1279922 -7876197 - L1MA8 LINE L1 -1327 4819 3908 201 355 9 19 chr1_random 1280091 1280198 -7875921 + L2 LINE L2 3208 3313 0 270 21 64 0 chr1_random 1280251 1280298 -7875821 + (TTG)n Simple_repeat Simple_repeat 2 51 0 371 256 45 51 chr1_random 1280506 1280682 -7875437 - MIR SINE MIR -21 241 67 255 300 76 38 chr1_random 1281621 1281831 -7874288 + L1MC/D LINE L1 5413 5630 -2178 1419 211 43 19 chr1_random 1281852 1282227 -7873892 + MLT1B LTR MaLR 1 384 -6 450 188 0 12 chr1_random 1283079 1283159 -7872960 + AluJb SINE Alu 211 289 -23 200 323 21 32 chr1_random 1283958 1284051 -7872068 + MIR SINE MIR 73 164 -98 218 204 159 62 chr1_random 1284186 1284299 -7871820 + MIR3 SINE MIR 78 201 -7 267 271 0 0 chr1_random 1284372 1284431 -7871688 + MLT1E LTR MaLR 87 145 -448 248 282 121 17 chr1_random 1284444 1284618 -7871501 - MLT1A1 LTR MaLR -84 290 87 229 188 106 12 chr1_random 1284664 1284749 -7871370 - L1M LINE L1 -2403 5405 5313 2233 108 3 9 chr1_random 1285705 1286020 -7870099 - AluSp SINE Alu 0 313 1 1718 171 29 0 chr1_random 1286027 1286307 -7869812 - AluJb SINE Alu -20 292 5 827 251 0 0 chr1_random 1287677 1287888 -7868231 - L1PA16 LINE L1 -1134 5012 4802 3442 176 28 16 chr1_random 1287891 1288345 -7867774 + L1PA16 LINE L1 4996 5443 -723 1559 87 6 109 chr1_random 1288345 1288657 -7867462 + AluYa5 SINE Alu 16 295 -16 3442 176 28 16 chr1_random 1288657 1289140 -7866979 + L1PA16 LINE L1 5443 5940 -226 264 150 50 0 chr1_random 1289223 1289283 -7866836 + L1PA16 LINE L1 6095 6157 -9 324 167 0 0 chr1_random 1289287 1289359 -7866760 + L1MA9 LINE L1 6241 6312 0 21 0 0 0 chr1_random 1289959 1289980 -7866139 + AT_rich Low_complexity Low_complexity 1 21 0 1135 172 45 59 chr1_random 1290071 1290292 -7865827 - AluJo SINE Alu -10 302 85 260 267 22 0 chr1_random 1293147 1293237 -7862882 + MLT1H LTR MaLR 457 548 -1 442 249 35 40 chr1_random 1293277 1293450 -7862669 + HAL1 LINE L1 2 173 -2334 298 206 14 0 chr1_random 1293469 1293542 -7862577 + L1ME2 LINE L1 6074 6147 -17 2294 93 40 0 chr1_random 1293586 1293887 -7862232 - AluSq SINE Alu 0 313 1 1439 209 40 38 chr1_random 1294048 1294421 -7861698 + MLT1A2 LTR MaLR 1 374 0 25 31 0 0 chr1_random 1294448 1294480 -7861639 + AT_rich Low_complexity Low_complexity 1 32 0 895 325 57 37 chr1_random 1294672 1295465 -7860654 + L1MEd LINE L1 4 812 -5307 5184 20 2 0 chr1_random 1295521 1296119 -7860000 - L1PA4 LINE L1 -3 6152 5554 380 335 8 23 chr1_random 1296121 1296378 -7859741 + HERVI LTR ERV1 2643 2895 -4001 335 313 22 0 chr1_random 1297129 1297283 -7858836 + HERVI LTR ERV1 3380 5434 -1215 641 277 43 33 chr1_random 1297565 1297868 -7858251 + HERVI LTR ERV1 6898 7203 -582 2001 169 93 32 chr1_random 1298246 1298708 -7857411 + LTR2B LTR ERV1 1 490 0 8837 88 16 61 chr1_random 1298708 1300194 -7855925 + Harlequin LTR ERV1 1 1419 -5477 * 23801 63 4 8 chr1_random 1300181 1303493 -7852626 + Harlequin LTR ERV1 1807 5098 -1798 9633 91 1 9 chr1_random 1303491 1304788 -7851331 + Harlequin LTR ERV1 5610 6896 0 * 1883 174 78 56 chr1_random 1304807 1305195 -7850924 + LTR2B LTR ERV1 32 433 -57 2376 85 6 29 chr1_random 1305195 1305511 -7850608 - AluY SINE Alu -2 309 1 1883 174 78 56 chr1_random 1305511 1305571 -7850548 + LTR2B LTR ERV1 433 490 0 307 286 0 0 chr1_random 1305568 1305652 -7850467 + BSR/Beta Satellite Satellite 23 106 -46 * 2088 289 53 12 chr1_random 1306497 1307453 -7848666 + L1 LINE L1 -345 848 -5455 2860 239 70 17 chr1_random 1307490 1308643 -7847476 + L1 LINE L1 797 1825 -4518 2174 214 45 54 chr1_random 1308714 1309289 -7846830 + L1 LINE L1 4495 5063 -1319 1433 176 72 55 chr1_random 1309289 1309596 -7846523 + AluJb SINE Alu 1 312 0 2174 214 45 54 chr1_random 1309596 1309760 -7846359 + L1 LINE L1 5063 5227 -1155 925 197 0 0 chr1_random 1309762 1309914 -7846205 + AluSg/x SINE Alu 137 288 -24 559 174 0 93 chr1_random 1309927 1310099 -7846020 + L1 LINE L1 5216 5371 -1011 304 284 8 31 chr1_random 1310705 1310832 -7845287 - L1M4 LINE L1 -2157 3989 3866 1162 230 92 46 chr1_random 1312787 1313052 -7843067 + L1M4 LINE L1 3922 4173 -1973 2001 121 38 7 chr1_random 1313052 1313363 -7842756 - AluSx SINE Alu 0 312 1 1162 230 92 46 chr1_random 1313363 1313618 -7842501 + L1M4 LINE L1 4173 4466 -1680 325 106 0 30 chr1_random 1313920 1313986 -7842133 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 1734 175 23 16 chr1_random 1314006 1314315 -7841804 - AluJo SINE Alu -1 311 1 21 57 0 0 chr1_random 1314785 1314820 -7841299 + AT_rich Low_complexity Low_complexity 1 35 0 276 273 70 63 chr1_random 1315569 1315712 -7840407 - MLT1J2 LTR MaLR -286 164 21 2347 110 0 3 chr1_random 1317459 1317769 -7838350 - AluSc SINE Alu 0 309 1 1427 196 9 59 chr1_random 1317896 1318218 -7837901 - AluJo SINE Alu -6 306 1 320 302 93 20 chr1_random 1318475 1318776 -7837343 + L2 LINE L2 2035 2357 -957 29200 125 17 35 chr1_random 1318893 1324756 -7831363 + L1PA7 LINE L1 389 6154 0 1307 125 0 0 chr1_random 1324774 1324950 -7831169 + AluSg/x SINE Alu 129 304 -8 1787 76 0 0 chr1_random 1325126 1325336 -7830783 + AluY SINE Alu 1 210 -101 611 164 53 11 chr1_random 1325854 1326025 -7830094 + Tigger2a DNA MER2_type 1 263 -181 2367 94 3 3 chr1_random 1326280 1326589 -7829530 + AluY SINE Alu 1 309 -2 260 376 68 23 chr1_random 1327146 1327500 -7828619 - L2 LINE L2 -878 2436 2067 2284 106 17 0 chr1_random 1327874 1328176 -7827943 + AluSp SINE Alu 2 308 -5 233 333 57 16 chr1_random 1328242 1328434 -7827685 + L1M4 LINE L1 4405 4604 -1542 904 255 19 37 chr1_random 1328549 1328820 -7827299 - MLT1A2 LTR MaLR 0 374 109 6624 34 12 3 chr1_random 1328986 1329731 -7826388 - SVA Other Other 0 1386 635 594 79 0 39 chr1_random 1329893 1330020 -7826099 - SVA Other Other -600 786 665 5962 70 24 5 chr1_random 1330034 1330822 -7825297 - SVA Other Other -520 866 64 1019 280 38 3 chr1_random 1330875 1331168 -7824951 + MER77 LTR ERV1 299 601 -4 730 294 101 6 chr1_random 1331275 1331591 -7824528 + L1MEc LINE L1 1725 2070 -4326 901 122 0 34 chr1_random 1331594 1331742 -7824377 + FLAM_C SINE Alu 1 143 0 2108 131 3 7 chr1_random 1331999 1332296 -7823823 - AluSx SINE Alu -16 296 1 2894 168 20 4 chr1_random 1332327 1332827 -7823292 + L1P3 LINE L1 1 508 -5367 17807 165 13 28 chr1_random 1332827 1335001 -7821118 + L1P3 LINE L1 771 2885 -3576 2284 123 0 0 chr1_random 1335001 1335309 -7820810 + AluSg SINE Alu 1 308 -2 17807 165 13 28 chr1_random 1335309 1336780 -7819339 + L1P3 LINE L1 2885 4377 -2084 9463 77 5 27 chr1_random 1336780 1338054 -7818065 + Harlequin LTR ERV1 4465 5710 -1186 741 132 0 25 chr1_random 1338048 1338169 -7817950 + Harlequin LTR ERV1 6779 6896 0 * 2489 160 28 36 chr1_random 1338169 1338663 -7817456 + LTR2B LTR ERV1 1 490 0 564 111 44 0 chr1_random 1338678 1338813 -7817306 + CT-rich Low_complexity Low_complexity 2 142 0 990 219 68 53 chr1_random 1339483 1339807 -7816312 - LTR10A-int LTR ERV1 -6335 314 1 1753 173 171 43 chr1_random 1339816 1340302 -7815817 - LTR10A LTR ERV1 -61 548 1 3164 115 73 4 chr1_random 1340321 1340871 -7815248 + MER4B LTR ERV1 27 779 0 707 110 20 0 chr1_random 1341151 1341251 -7814868 - LTR10C LTR ERV1 0 591 490 7610 87 12 18 chr1_random 1341257 1342320 -7813799 + MER11C LTR ERVK 1 1057 -14 1694 166 21 32 chr1_random 1342381 1342835 -7813284 - LTR10E LTR ERV1 -121 470 1 1988 114 45 81 chr1_random 1342922 1343326 -7812793 + MER4A LTR ERV1 1 426 -171 488 156 0 0 chr1_random 1343332 1343409 -7812710 + MER4A LTR ERV1 355 431 -233 543 264 34 11 chr1_random 1343419 1343597 -7812522 + MER4C LTR ERV1 276 457 -8 4104 141 29 21 chr1_random 1343979 1344680 -7811439 + LTR62 LTR ERVK 1 706 -13 1987 271 43 18 chr1_random 1344694 1345126 -7810993 - L1M4 LINE L1 -1684 4462 4003 2327 109 3 0 chr1_random 1345126 1345429 -7810690 - AluSq SINE Alu -1 312 9 1987 271 43 18 chr1_random 1345429 1345718 -7810401 - L1M4 LINE L1 -2143 4003 3723 1670 234 27 38 chr1_random 1345722 1346170 -7809949 + LTR47B LTR ERVL 1 443 0 700 191 135 11 chr1_random 1346312 1346490 -7809629 + AluJo SINE Alu 96 295 -17 239 231 0 0 chr1_random 1346580 1346632 -7809487 + MER72 LTR ERV1 410 461 -261 2249 95 7 3 chr1_random 1346672 1346968 -7809151 - AluSx SINE Alu -15 297 1 263 264 28 0 chr1_random 1346969 1347075 -7809044 - L1M4 LINE L1 -3212 2934 2826 21 0 0 0 chr1_random 1347335 1347356 -7808763 + GC_rich Low_complexity Low_complexity 1 21 0 475 186 21 69 chr1_random 1347405 1347593 -7808526 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 327 303 16 33 chr1_random 1350192 1350314 -7805805 - L2 LINE L2 -3 3310 3191 892 168 0 45 chr1_random 1353239 1353418 -7802701 + AluJb SINE Alu 17 187 -125 1868 184 88 45 chr1_random 1355364 1355497 -7800622 - LTR42 LTR ERVL -6 489 363 1357 143 86 92 chr1_random 1355497 1355811 -7800308 - AluJo SINE Alu 0 312 1 1868 184 88 45 chr1_random 1355811 1356144 -7799975 - LTR42 LTR ERVL -132 363 3 2299 88 0 13 chr1_random 1357015 1357323 -7798796 - AluSg SINE Alu 0 310 7 213 108 0 0 chr1_random 1357374 1357411 -7798708 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 229 261 72 0 chr1_random 1358079 1358148 -7797971 + MER5A DNA MER1_type 33 106 -83 867 201 6 6 chr1_random 1358151 1358315 -7797804 - AluSg/x SINE Alu -13 296 133 356 350 91 16 chr1_random 1359201 1359521 -7796598 - L2 LINE L2 -436 2878 2535 181 378 144 3 chr1_random 1360092 1360383 -7795736 - L2 LINE L2 -970 2344 2013 263 308 0 0 chr1_random 1360476 1360554 -7795565 + Cheshire DNA MER1_type 210 287 -2133 1169 157 0 5 chr1_random 1360989 1361019 -7795100 - AluJb SINE Alu 0 312 283 1892 40 0 0 chr1_random 1361019 1361243 -7794876 - L1PA3 LINE L1 0 6155 5932 1169 157 0 5 chr1_random 1361243 1361403 -7794716 - AluJb SINE Alu -29 283 123 705 304 52 4 chr1_random 1362979 1363249 -7792870 + MER2 DNA MER2_type 63 345 0 223 188 16 16 chr1_random 1363529 1363593 -7792526 + CT-rich Low_complexity Low_complexity 3 66 0 423 302 62 45 chr1_random 1364651 1364893 -7791226 - LTR40a LTR ERVL -205 314 69 228 394 42 7 chr1_random 1365834 1365976 -7790143 + MIR3 SINE MIR 46 192 -16 430 316 184 34 chr1_random 1367824 1368210 -7787909 - HAL1 LINE L1 -1182 1325 882 451 131 0 19 chr1_random 1368728 1368835 -7787284 + (TG)n Simple_repeat Simple_repeat 2 106 0 539 257 166 4 chr1_random 1369230 1369495 -7786624 - MLT2D LTR ERVL -106 308 1 2479 58 0 6 chr1_random 1370741 1371054 -7785065 - AluY SINE Alu 0 311 1 1456 242 67 38 chr1_random 1371080 1371605 -7784514 - L1MA9 LINE L1 0 6312 5773 286 268 39 17 chr1_random 1371605 1371742 -7784377 - LTR38 LTR ERV1 0 547 399 732 181 35 35 chr1_random 1372116 1372245 -7783874 - L1MA9 LINE L1 -534 5778 5647 1872 210 94 5 chr1_random 1372245 1372660 -7783459 + LTR47A LTR ERVL 1 452 0 732 181 35 35 chr1_random 1372660 1372701 -7783418 - L1MA9 LINE L1 -664 5648 5608 4356 133 36 68 chr1_random 1372701 1373512 -7782607 - LTR1 LTR ERV1 0 785 1 275 111 0 0 chr1_random 1373563 1373608 -7782511 - L1MA9 LINE L1 -732 5602 5558 893 136 23 40 chr1_random 1373913 1374089 -7782030 + MER4D LTR ERV1 1 173 -437 423 224 75 22 chr1_random 1374056 1374190 -7781929 + MER4E LTR ERV1 346 486 -293 * 1128 168 9 44 chr1_random 1374190 1374363 -7781756 - AluJo SINE Alu -10 302 137 2097 133 13 3 chr1_random 1374363 1374672 -7781447 - AluSx SINE Alu 0 312 1 1128 168 9 44 chr1_random 1374672 1374724 -7781395 - AluJo SINE Alu -175 137 85 251 315 109 0 chr1_random 1374790 1374882 -7781237 + LTR1 LTR ERV1 262 363 -422 1446 158 50 7 chr1_random 1374906 1375185 -7780934 + MER4E LTR ERV1 489 779 0 2245 231 96 0 chr1_random 1375616 1376201 -7779918 - L1M3f LINE L1 -4687 641 1 552 251 156 4 chr1_random 1376571 1376814 -7779305 - Charlie4a DNA MER1_type -177 331 52 234 168 32 84 chr1_random 1376867 1376962 -7779157 + MLT2C1 LTR ERVL 308 397 0 600 356 126 0 chr1_random 1376969 1377295 -7778824 + ERVL LTR ERVL 336 702 -5062 372 171 73 0 chr1_random 1377556 1377638 -7778481 - MER3 DNA MER1_type -117 92 5 1641 203 107 0 chr1_random 1378727 1379140 -7776979 + MSTB2 LTR MaLR 1 457 0 258 260 83 0 chr1_random 1381826 1381922 -7774197 - L1MD3 LINE L1 -389 7606 7503 1796 169 7 0 chr1_random 1381934 1382230 -7773889 - AluJo SINE Alu -1 311 14 1187 165 9 27 chr1_random 1383475 1383612 -7772507 + AluJo SINE Alu 1 134 -178 2076 113 3 3 chr1_random 1383612 1383914 -7772205 + AluSg SINE Alu 1 302 -8 1187 165 9 27 chr1_random 1383914 1384000 -7772119 + AluJo SINE Alu 134 220 -92 314 247 20 28 chr1_random 1386345 1386599 -7769520 + (TG)n Simple_repeat Simple_repeat 1 252 0 382 247 21 54 chr1_random 1386625 1386811 -7769308 + (TG)n Simple_repeat Simple_repeat 1 180 0 454 316 13 6 chr1_random 1386984 1387142 -7768977 - L1MC5 LINE L1 -186 7775 7617 225 0 0 0 chr1_random 1390643 1390668 -7765451 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 429 280 31 0 chr1_random 1391238 1391429 -7764690 - L1MB3 LINE L1 -132 6048 5847 233 186 0 0 chr1_random 1391512 1391555 -7764564 - L1MB3 LINE L1 -495 5685 5643 950 258 69 6 chr1_random 1391591 1391909 -7764210 - L1MB3 LINE L1 -1070 5076 4739 1799 167 0 32 chr1_random 1391910 1392222 -7763897 - AluJb SINE Alu -10 302 1 1962 265 79 2 chr1_random 1392224 1392857 -7763262 + Tigger3(Golem) DNA MER2_type 2347 3028 -1 570 323 155 49 chr1_random 1392858 1393226 -7762893 - L1MB3 LINE L1 -3180 2966 2560 22 35 0 0 chr1_random 1396055 1396084 -7760035 + AT_rich Low_complexity Low_complexity 1 29 0 357 187 6 67 chr1_random 1396117 1396231 -7759888 - L1MA5A LINE L1 -3 6297 6184 238 289 76 19 chr1_random 1396423 1396634 -7759485 + MER33 DNA MER1_type 32 254 -70 339 391 59 23 chr1_random 1396966 1397186 -7758933 + L1ME4a LINE L1 5859 6086 -35 479 275 111 14 chr1_random 1597601 1597961 -7558158 + L1ME LINE L1 556 950 -5120 862 142 0 83 chr1_random 1597961 1598130 -7557989 - MLT1E3 LTR MaLR 0 624 470 810 282 38 28 chr1_random 1598279 1598566 -7557553 - LTR8 LTR ERV1 0 691 402 1099 192 5 10 chr1_random 1598941 1599139 -7556980 + MER72 LTR ERV1 3 199 -523 39 50 0 0 chr1_random 1599142 1599202 -7556917 + AT_rich Low_complexity Low_complexity 1 60 0 628 209 0 0 chr1_random 1599204 1599319 -7556800 - FLAM_C SINE Alu -18 115 1 2017 154 52 0 chr1_random 1599319 1599649 -7556470 + MER72 LTR ERV1 185 531 -191 1217 126 5 0 chr1_random 1599696 1599886 -7556233 + MER72 LTR ERV1 528 718 -4 4702 108 24 22 chr1_random 1600123 1600300 -7555819 - L1PA16 LINE L1 -11 6155 5980 2468 89 0 0 chr1_random 1600300 1600603 -7555516 - AluSg SINE Alu -7 303 1 4702 108 24 22 chr1_random 1600603 1601165 -7554954 - L1PA16 LINE L1 -186 5980 5414 1940 118 56 0 chr1_random 1601266 1601587 -7554532 - HERVH LTR ERV1 -53 7660 7322 1364 120 23 9 chr1_random 1601585 1601802 -7554317 - HERVH LTR ERV1 -1894 5819 5600 * 5696 104 1 1 chr1_random 1601803 1602602 -7553517 - HERVH LTR ERV1 -2564 5149 4351 1204 203 82 23 chr1_random 1604400 1604706 -7551413 - MER2 DNA MER2_type 0 345 22 29 60 0 0 chr1_random 1605075 1605125 -7550994 + AT_rich Low_complexity Low_complexity 1 50 0 842 211 101 5 chr1_random 1605787 1605986 -7550133 + MER21B LTR ERV1 605 822 -41 3652 98 5 74 chr1_random 1606123 1606734 -7549385 - MER4B LTR ERV1 0 610 42 343 109 0 0 chr1_random 1606863 1606909 -7549210 - MLT1C LTR MaLR -421 46 1 2646 233 52 35 chr1_random 1607180 1607961 -7548158 - L1ME1 LINE L1 -7 6159 5365 213 200 0 0 chr1_random 1608062 1608102 -7548017 + GA-rich Low_complexity Low_complexity 1 40 0 255 320 131 25 chr1_random 1608420 1608542 -7547577 + MIR SINE MIR 7 141 -121 1138 93 0 7 chr1_random 1611211 1611361 -7544758 + AluY SINE Alu 1 149 -162 237 311 46 33 chr1_random 1611563 1611714 -7544405 + MER5A DNA MER1_type 13 165 -24 2577 72 125 5 chr1_random 1611793 1612193 -7543926 + LTR7 LTR ERV1 1 448 -2 6881 136 14 10 chr1_random 1612195 1613312 -7542807 + HERVH LTR ERV1 1 1122 -6591 300 120 0 0 chr1_random 1613493 1613543 -7542576 + (A)n Simple_repeat Simple_repeat 1 50 0 225 220 0 0 chr1_random 1615349 1615399 -7540720 - L1MC4 LINE L1 -1340 6702 6653 256 284 0 0 chr1_random 1615404 1615492 -7540627 - L1MC4 LINE L1 -1341 6701 6614 316 206 39 39 chr1_random 1615546 1615726 -7540393 + (TA)n Simple_repeat Simple_repeat 1 180 0 1828 243 50 59 chr1_random 1615812 1616371 -7539748 - MLT2B3 LTR ERVL 0 554 1 303 151 0 116 chr1_random 1616758 1616876 -7539243 - AluS SINE Alu 0 333 226 328 141 0 28 chr1_random 1617003 1617074 -7539045 + L1PA16 LINE L1 6098 6166 0 1607 106 0 0 chr1_random 1617933 1618170 -7537949 - L1PA13 LINE L1 -4 6159 5923 26 30 0 0 chr1_random 1618422 1618455 -7537664 + AT_rich Low_complexity Low_complexity 1 33 0 410 309 131 0 chr1_random 1618937 1619112 -7537007 - MIR SINE MIR 0 262 65 182 273 0 0 chr1_random 1619231 1619275 -7536844 + L2 LINE L2 3209 3252 -20 28 61 0 0 chr1_random 1619289 1619338 -7536781 + AT_rich Low_complexity Low_complexity 1 49 0 2147 152 30 8 chr1_random 1619696 1620058 -7536061 + THE1C LTR MaLR 6 375 0 3330 146 75 0 chr1_random 1620058 1620635 -7535484 + THE1C-int LTR MaLR 1 620 -960 433 229 0 19 chr1_random 1622286 1622391 -7533728 + MIR SINE MIR 129 231 -31 1418 200 75 9 chr1_random 1622752 1623087 -7533032 - MER31A LTR ERV1 -43 442 86 1533 87 10 5 chr1_random 1623213 1623421 -7532698 - AluSc SINE Alu -100 209 1 325 83 0 0 chr1_random 1623689 1623737 -7532382 + L1MD2 LINE L1 6295 6342 -17 24 53 0 0 chr1_random 1623747 1623785 -7532334 + AT_rich Low_complexity Low_complexity 1 38 0 261 292 196 31 chr1_random 1623877 1624137 -7531982 - L2 LINE L2 -82 3231 2929 305 324 0 9 chr1_random 1624999 1625104 -7531015 - MIR SINE MIR -64 198 95 369 293 94 28 chr1_random 1625227 1625408 -7530711 - MLT1K LTR MaLR -89 499 307 555 331 88 26 chr1_random 1625573 1625914 -7530205 + L2 LINE L2 2508 2869 -445 188 277 138 11 chr1_random 1626021 1626115 -7530004 + MIR SINE MIR 112 217 -45 1022 193 5 0 chr1_random 1626170 1626357 -7529762 - MER41C LTR ERV1 0 554 367 3821 176 83 21 chr1_random 1626457 1628198 -7527921 - L1PBa LINE L1 -4861 2002 4 477 324 39 42 chr1_random 1628889 1629195 -7526924 + L1MEc LINE L1 333 637 -5759 536 210 32 146 chr1_random 1629259 1629407 -7526712 - MER20 DNA MER1_type -24 195 78 2367 77 0 3 chr1_random 1629407 1629704 -7526415 + AluY SINE Alu 1 296 -15 536 210 32 146 chr1_random 1629704 1629774 -7526345 - MER20 DNA MER1_type -141 78 2 798 307 67 49 chr1_random 1629778 1630657 -7525462 + L1MEc LINE L1 635 1495 -4720 232 26 0 51 chr1_random 1630681 1630720 -7525399 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 1195 154 70 0 chr1_random 1630735 1630936 -7525183 - AluSg1 SINE Alu -94 215 1 319 265 39 28 chr1_random 1630966 1631147 -7524972 + L1MEc LINE L1 1598 1780 -4616 38 39 0 0 chr1_random 1631179 1631231 -7524888 + AT_rich Low_complexity Low_complexity 1 52 0 570 257 34 6 chr1_random 1631542 1631717 -7524402 + L1MEc LINE L1 3584 3763 -2452 6224 50 0 0 chr1_random 1631984 1632751 -7523368 + L1PA4 LINE L1 5388 6154 -1 21 36 0 0 chr1_random 1634258 1634286 -7521833 + AT_rich Low_complexity Low_complexity 1 28 0 2405 93 0 0 chr1_random 1635123 1635434 -7520685 + AluY SINE Alu 1 311 0 284 289 13 0 chr1_random 1635438 1635514 -7520605 + MLT1I LTR MaLR 323 399 -10 21 0 0 0 chr1_random 1635963 1635984 -7520135 + AT_rich Low_complexity Low_complexity 1 21 0 353 346 56 45 chr1_random 1636505 1636860 -7519259 + MLT1I LTR MaLR 3 361 -48 603 241 0 15 chr1_random 1638316 1638449 -7517670 - MLT1A1 LTR MaLR 0 365 235 658 322 62 42 chr1_random 1638552 1639209 -7516910 - L2 LINE L2 0 3313 2644 452 273 16 0 chr1_random 1639212 1639340 -7516779 + MIR SINE MIR 128 257 -5 21 0 0 0 chr1_random 1639873 1639894 -7516225 + AT_rich Low_complexity Low_complexity 1 21 0 710 291 119 43 chr1_random 1640512 1641038 -7515081 + L2 LINE L2 2616 3198 -115 252 0 0 0 chr1_random 1641038 1641066 -7515053 + (TG)n Simple_repeat Simple_repeat 2 29 0 710 291 119 43 chr1_random 1641066 1641188 -7514931 + L2 LINE L2 3198 3309 -4 2017 136 0 0 chr1_random 1641443 1641757 -7514362 - AluSx SINE Alu 0 316 3 4902 206 34 22 chr1_random 1641988 1643363 -7512756 + L1MC1 LINE L1 4942 6332 -1 358 143 0 0 chr1_random 1643419 1643489 -7512630 - L1MA3 LINE L1 0 6305 6236 1461 260 52 21 chr1_random 1643508 1644088 -7512031 + L1M4 LINE L1 4618 5215 -931 419 306 51 6 chr1_random 1644150 1644307 -7511812 - MIR SINE MIR -13 249 86 2478 69 0 0 chr1_random 1644964 1645268 -7510851 + AluY SINE Alu 1 304 -7 5205 156 27 22 chr1_random 1646318 1647211 -7508908 + THE1C-int LTR MaLR 684 1580 0 2219 138 27 14 chr1_random 1647211 1647581 -7508538 + THE1C LTR MaLR 1 375 0 32 26 0 0 chr1_random 1647737 1647776 -7508343 + AT_rich Low_complexity Low_complexity 1 39 0 184 215 11 11 chr1_random 1649389 1649482 -7506637 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 36 0 0 chr1_random 1649769 1649797 -7506322 + AT_rich Low_complexity Low_complexity 1 28 0 2572 109 22 3 chr1_random 1650186 1650554 -7505565 + THE1C LTR MaLR 1 375 0 821 138 69 0 chr1_random 1650571 1650752 -7505367 + THE1C-int LTR MaLR 30 156 -1424 251 82 102 0 chr1_random 1650752 1650801 -7505318 + THE1C-int LTR MaLR 100 153 -1427 5490 167 17 15 chr1_random 1650901 1651878 -7504241 + THE1C-int LTR MaLR 587 1565 -15 4300 249 26 41 chr1_random 1651873 1653462 -7502657 - L1MEc LINE L1 -1894 4252 2688 * 3263 187 22 38 chr1_random 1653534 1654802 -7501317 + L1PA16 LINE L1 4604 5844 -322 203 233 146 48 chr1_random 1655139 1655242 -7500877 + L2 LINE L2 3180 3292 -21 198 71 0 0 chr1_random 1656713 1656741 -7499378 + (CA)n Simple_repeat Simple_repeat 2 29 0 215 271 157 81 chr1_random 1656793 1656879 -7499240 + MIR SINE MIR 7 85 -177 2025 129 0 0 chr1_random 1656879 1657209 -7498910 - AluSx SINE Alu 0 332 3 215 271 157 81 chr1_random 1657209 1657357 -7498762 + MIR SINE MIR 85 260 -2 379 229 72 39 chr1_random 1658070 1658252 -7497867 - L1MEc LINE L1 -3779 2404 2203 321 243 66 59 chr1_random 1658231 1658367 -7497752 - L1ME1 LINE L1 -123 6043 5907 * 1053 267 63 16 chr1_random 1658467 1658834 -7497285 - L1ME1 LINE L1 -466 5700 5317 481 269 122 43 chr1_random 1658881 1659372 -7496747 - L1ME1 LINE L1 -2595 3551 3022 * 1971 202 97 36 chr1_random 1659362 1659942 -7496177 - L1MA7 LINE L1 0 6291 5677 494 246 86 4 chr1_random 1659964 1660208 -7495911 - L1ME1 LINE L1 -3142 3004 2741 2072 191 34 24 chr1_random 1660264 1660728 -7495391 - L1MB2 LINE L1 -21 6150 5679 207 0 0 0 chr1_random 1660749 1660772 -7495347 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr1_random 1660845 1660868 -7495251 + AT_rich Low_complexity Low_complexity 1 23 0 471 316 42 29 chr1_random 1661581 1661719 -7494400 + L2 LINE L2 2120 2255 -1059 2156 212 20 67 chr1_random 1661719 1662257 -7493862 - MLT2B2 LTR ERVL 0 515 3 471 316 42 29 chr1_random 1662257 1662425 -7493694 + L2 LINE L2 2255 2430 -884 363 272 61 18 chr1_random 1662422 1662536 -7493583 - L2 LINE L2 -1 3312 3194 * 25 51 0 0 chr1_random 1662938 1662977 -7493142 + AT_rich Low_complexity Low_complexity 1 39 0 322 314 157 22 chr1_random 1663090 1663313 -7492806 - MLT1J LTR MaLR -174 337 85 483 60 0 0 chr1_random 1663466 1663533 -7492586 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1992 129 0 3 chr1_random 1663533 1663822 -7492297 - AluSq SINE Alu -25 288 1 2277 143 57 7 chr1_random 1664418 1664824 -7491295 - MSTA LTR MaLR -2 426 1 1340 135 5 14 chr1_random 1665203 1665411 -7490708 + AluSg/x SINE Alu 101 306 -6 1914 70 0 0 chr1_random 1665651 1665893 -7490226 + AluY SINE Alu 47 288 -23 431 320 143 20 chr1_random 1666057 1666351 -7489768 + HAL1b LINE L1 115 444 -904 21 0 0 0 chr1_random 1666988 1667009 -7489110 + AT_rich Low_complexity Low_complexity 1 21 0 1078 253 111 11 chr1_random 1667447 1667807 -7488312 + MSTD LTR MaLR 1 396 0 327 25 0 0 chr1_random 1668492 1668532 -7487587 + (TC)n Simple_repeat Simple_repeat 1 40 0 288 0 0 0 chr1_random 1668531 1668563 -7487556 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 258 136 0 0 chr1_random 1668843 1668887 -7487232 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 57 0 0 chr1_random 1669577 1669612 -7486507 + AT_rich Low_complexity Low_complexity 1 35 0 538 104 83 0 chr1_random 1669806 1669902 -7486217 + L1MB3 LINE L1 6078 6181 -2 273 264 44 22 chr1_random 1670153 1670244 -7485875 + MLT1H LTR MaLR 454 546 -3 38 22 0 0 chr1_random 1670632 1670677 -7485442 + AT_rich Low_complexity Low_complexity 1 45 0 978 200 26 0 chr1_random 1671047 1671242 -7484877 - MLT1C LTR MaLR 0 467 268 34 42 0 0 chr1_random 1671628 1671676 -7484443 + AT_rich Low_complexity Low_complexity 1 48 0 1350 148 43 12 chr1_random 1672451 1672707 -7483412 - L1MA8 LINE L1 -17 6274 6011 3117 42 3 0 chr1_random 1672761 1673142 -7482977 + L1PA3 LINE L1 5769 6150 -5 1390 238 34 3 chr1_random 1673148 1673526 -7482593 - L1M4 LINE L1 -1503 4643 4254 195 293 0 17 chr1_random 1675940 1675998 -7480121 + L2 LINE L2 3255 3311 -2 1387 143 14 0 chr1_random 1676488 1676697 -7479422 - MER41C LTR ERV1 -342 212 1 309 325 53 20 chr1_random 1676717 1676868 -7479251 + L2 LINE L2 3156 3311 -2 2012 120 52 60 chr1_random 1677391 1677758 -7478361 + THE1B LTR MaLR 1 364 0 11214 107 4 2 chr1_random 1677758 1679335 -7476784 + THE1B-int LTR MaLR 1 1580 0 1951 141 51 25 chr1_random 1679335 1679690 -7476429 + THE1B LTR MaLR 1 364 0 452 301 92 68 chr1_random 1679819 1680201 -7475918 + MLT1L LTR MaLR 222 612 -3 1852 156 49 3 chr1_random 1680494 1680822 -7475297 + MER61A LTR ERV1 1 343 0 21 57 0 0 chr1_random 1681211 1681246 -7474873 + AT_rich Low_complexity Low_complexity 1 35 0 1995 122 11 0 chr1_random 1682150 1682437 -7473682 + AluSx SINE Alu 1 290 -22 499 259 45 15 chr1_random 1682532 1682733 -7473386 - L1ME3 LINE L1 -22 6140 5934 4857 214 46 25 chr1_random 1683397 1685557 -7470562 - L1MB1 LINE L1 0 6168 3961 2192 138 3 3 chr1_random 1685566 1685927 -7470192 - L1PB1 LINE L1 0 6151 5791 216 200 0 0 chr1_random 1685927 1685977 -7470142 + (TATATG)n Simple_repeat Simple_repeat 6 55 0 226 127 18 18 chr1_random 1685979 1686034 -7470085 + LTR66 LTR ERVL 382 436 -174 266 247 25 0 chr1_random 1686065 1686146 -7469973 + L1MC4 LINE L1 6614 6696 -1346 * 737 205 47 11 chr1_random 1686143 1686333 -7469786 - L1M4 LINE L1 -2023 4123 3927 241 127 13 51 chr1_random 1686440 1686519 -7469600 + (TA)n Simple_repeat Simple_repeat 1 76 0 12634 211 16 10 chr1_random 1686525 1689926 -7466193 - L1P5 LINE L1 -360 6507 3083 25008 56 9 1 chr1_random 1689944 1694009 -7462110 - L1PA5 LINE L1 -7 6147 2048 3638 84 2 2 chr1_random 1693996 1694494 -7461625 + L1P LINE L1 1345 1842 -4304 * 6515 26 1 0 chr1_random 1694519 1695283 -7460836 - L1PA3 LINE L1 0 6155 5391 * 8742 31 0 0 chr1_random 1695282 1696349 -7459770 + L1PA3 LINE L1 4334 5400 -746 1381 109 0 5 chr1_random 1696346 1696547 -7459572 + L1P LINE L1 1832 2031 -4115 * 4467 123 87 25 chr1_random 1696555 1697452 -7458667 - L1P5 LINE L1 -3776 3086 2133 2394 119 30 0 chr1_random 1697979 1698348 -7457771 - L1PA11 LINE L1 -5 6169 5790 264 281 140 18 chr1_random 1698539 1698653 -7457466 + L2 LINE L2 3177 3304 -9 31 82 0 0 chr1_random 1700071 1700144 -7455975 + AT_rich Low_complexity Low_complexity 1 73 0 271 266 43 86 chr1_random 1700459 1700518 -7455601 - L1ME2 LINE L1 -27 6137 6077 1869 250 33 11 chr1_random 1700518 1700978 -7455141 + MER70A LTR ERVL 1 470 -2 271 266 43 86 chr1_random 1700978 1701057 -7455062 - L1ME2 LINE L1 -87 6077 6005 920 145 6 0 chr1_random 1701132 1701291 -7454828 - L1MA6 LINE L1 -1 6299 6140 11994 208 48 12 chr1_random 1701306 1702003 -7454116 - L1MA6 LINE L1 -751 5395 4724 4375 101 57 1 chr1_random 1702003 1702655 -7453464 - LTR12 LTR ERV1 0 688 1 11994 208 48 12 chr1_random 1702655 1702753 -7453366 - L1MA6 LINE L1 -1422 4724 4631 254 29 29 0 chr1_random 1702753 1702788 -7453331 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1780 146 0 4 chr1_random 1702792 1703066 -7453053 - AluSx SINE Alu -37 275 3 11994 208 48 12 chr1_random 1703066 1705289 -7450830 - L1MA6 LINE L1 -1517 4629 2322 250 35 70 18 chr1_random 1705406 1705463 -7450656 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 1717 158 7 18 chr1_random 1705678 1705962 -7450157 + AluSx SINE Alu 1 281 -31 180 0 0 0 chr1_random 1705965 1705985 -7450134 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 300 315 108 0 chr1_random 1706053 1706183 -7449936 - L2 LINE L2 -1 3312 3169 221 290 130 38 chr1_random 1706749 1706880 -7449239 + MIR SINE MIR 15 157 -105 * 341 279 36 9 chr1_random 1706879 1706990 -7449129 + L2 LINE L2 3195 3308 -5 2277 157 31 14 chr1_random 1707578 1707999 -7448120 - MSTA LTR MaLR 0 428 1 8144 207 17 16 chr1_random 1708011 1709642 -7446477 - MSTA-int LTR MaLR -18 1633 1 2665 147 12 0 chr1_random 1709642 1710065 -7446054 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr1_random 1710167 1710189 -7445930 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1_random 1710209 1710243 -7445876 + AT_rich Low_complexity Low_complexity 1 34 0 35 92 0 0 chr1_random 1710271 1710369 -7445750 + AT_rich Low_complexity Low_complexity 1 98 0 1397 231 82 14 chr1_random 1710831 1711370 -7444749 + L1M2 LINE L1 2492 3063 -4503 576 246 127 8 chr1_random 1711371 1711768 -7444351 - L1 LINE L1 -3728 2654 2204 221 69 115 0 chr1_random 1711768 1711855 -7444264 + (TA)n Simple_repeat Simple_repeat 2 98 0 8053 239 68 15 chr1_random 1711891 1712178 -7443941 + L1M2 LINE L1 2912 3182 -4383 2447 39 0 3 chr1_random 1712178 1712483 -7443636 + L1PA2 LINE L1 5851 6154 -1 8053 239 68 15 chr1_random 1712483 1715181 -7440938 + L1M2 LINE L1 3182 5901 -1664 1037 172 15 33 chr1_random 1715182 1715479 -7440640 + L1M2 LINE L1 6576 6870 -764 470 295 2 0 chr1_random 1715534 1715668 -7440451 - MER5A DNA MER1_type -12 166 31 623 225 165 34 chr1_random 1715681 1715908 -7440211 - MLT1D LTR MaLR -57 448 188 324 102 0 0 chr1_random 1715908 1715957 -7440162 + (CA)n Simple_repeat Simple_repeat 1 49 0 629 168 0 0 chr1_random 1715979 1716086 -7440033 - MLT1D LTR MaLR -260 245 139 21 0 0 0 chr1_random 1717116 1717137 -7438982 + AT_rich Low_complexity Low_complexity 1 21 0 274 217 14 14 chr1_random 1717373 1717442 -7438677 + AluY SINE Alu 68 136 -165 42 65 0 0 chr1_random 1717474 1717551 -7438568 + AT_rich Low_complexity Low_complexity 1 77 0 191 261 92 67 chr1_random 1717742 1717861 -7438258 + L2 LINE L2 3138 3259 -13 2150 126 3 0 chr1_random 1717993 1718294 -7437825 + AluSx SINE Alu 1 302 -10 252 360 118 7 chr1_random 1718343 1718479 -7437640 - L2 LINE L2 -8 3264 3114 921 188 10 5 chr1_random 1718517 1718731 -7437388 + L1M2 LINE L1 5459 5673 -624 324 0 0 0 chr1_random 1719265 1719301 -7436818 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 182 36 0 36 chr1_random 1720369 1720397 -7435722 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1040 228 55 1 chr1_random 1720590 1721049 -7435070 + MER34 LTR ERV1 27 540 -2 212 369 92 46 chr1_random 1721072 1721202 -7434917 + L2 LINE L2 3123 3258 -14 25 31 0 0 chr1_random 1721568 1721600 -7434519 + AT_rich Low_complexity Low_complexity 1 32 0 1025 226 17 97 chr1_random 1721815 1722164 -7433955 + L1MC4 LINE L1 6759 7079 -963 1361 240 109 28 chr1_random 1722171 1722637 -7433482 + L1MC4 LINE L1 7244 7747 -295 647 323 78 49 chr1_random 1722662 1723231 -7432888 - MLT1G LTR MaLR -6 584 6 1197 204 7 15 chr1_random 1723232 1723501 -7432618 + L1PA16 LINE L1 5897 6163 -3 524 254 0 0 chr1_random 1723535 1723661 -7432458 + L1MC4 LINE L1 7777 7902 -140 271 285 18 80 chr1_random 1724347 1724472 -7431647 + MIR SINE MIR 45 157 -67 1664 200 0 0 chr1_random 1724531 1724831 -7431288 + AluJb SINE Alu 1 300 -12 2314 65 0 29 chr1_random 1725225 1725532 -7430587 + AluY SINE Alu 1 298 -13 988 198 83 27 chr1_random 1725595 1725906 -7430213 - MER33 DNA MER1_type -5 319 1 239 141 74 8 chr1_random 1725906 1726027 -7430092 + (TA)n Simple_repeat Simple_repeat 2 130 0 306 50 0 0 chr1_random 1726255 1726295 -7429824 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 31 0 0 chr1_random 1727261 1727293 -7428826 + AT_rich Low_complexity Low_complexity 1 32 0 819 348 27 27 chr1_random 1727451 1727897 -7428222 + ERVL LTR ERVL 276 721 -5043 1784 312 63 56 chr1_random 1727960 1729181 -7426938 + ERVL LTR ERVL 891 2120 -3644 2185 287 62 39 chr1_random 1729186 1730091 -7426028 + ERVL LTR ERVL 3589 4514 -1250 1016 328 64 24 chr1_random 1730211 1730757 -7425362 + ERVL LTR ERVL 4687 5254 -510 574 301 129 36 chr1_random 1731191 1731796 -7424323 + MLT2F LTR ERVL 3 663 0 247 303 40 0 chr1_random 1733446 1733522 -7422597 - MIR3 SINE MIR -29 179 101 1308 243 40 23 chr1_random 1734069 1734419 -7421700 - MLT1A1 LTR MaLR 0 365 10 1862 161 0 3 chr1_random 1734500 1734798 -7421321 + AluSq SINE Alu 5 301 -12 866 145 6 17 chr1_random 1734807 1734986 -7421133 + GA-rich Low_complexity Low_complexity 4 180 0 243 417 39 8 chr1_random 1735677 1735936 -7420183 - L2 LINE L2 -195 3077 2811 328 288 72 36 chr1_random 1736316 1736455 -7419664 + MLT1J2 LTR MaLR 267 410 -40 369 326 101 50 chr1_random 1737162 1737579 -7418540 + L2 LINE L2 2836 3273 -40 424 350 37 30 chr1_random 1737589 1737889 -7418230 + MLT1L LTR MaLR 1 302 -313 2357 74 7 0 chr1_random 1738043 1738352 -7417767 + AluY SINE Alu 1 311 0 183 182 0 0 chr1_random 1738438 1738471 -7417648 + L2 LINE L2 3280 3312 -1 4322 157 23 82 chr1_random 1739305 1740010 -7416109 + L1MC1 LINE L1 5447 6085 -248 2065 144 0 0 chr1_random 1740010 1740315 -7415804 + AluSx SINE Alu 1 305 -7 4322 157 23 82 chr1_random 1740315 1740551 -7415568 + L1MC1 LINE L1 6085 6333 0 21 0 0 0 chr1_random 1741062 1741083 -7415036 + AT_rich Low_complexity Low_complexity 1 21 0 210 357 31 31 chr1_random 1741270 1741399 -7414720 + MIR3 SINE MIR 48 176 -32 2570 53 0 0 chr1_random 1743357 1743660 -7412459 + AluY SINE Alu 1 303 -8 366 255 60 54 chr1_random 1743998 1744147 -7411972 - MLT1H LTR MaLR 0 549 400 28 29 0 0 chr1_random 1745239 1745274 -7410845 + AT_rich Low_complexity Low_complexity 1 35 0 329 435 8 4 chr1_random 1745275 1745521 -7410598 - L3 LINE CR1 -767 810 564 21 0 0 0 chr1_random 1745840 1745861 -7410258 + AT_rich Low_complexity Low_complexity 1 21 0 701 124 28 34 chr1_random 1747179 1747356 -7408763 + CT-rich Low_complexity Low_complexity 4 179 0 1387 250 37 0 chr1_random 1747896 1748248 -7407871 + MLT1A1 LTR MaLR 1 365 0 237 352 11 0 chr1_random 1748677 1748765 -7407354 + L2 LINE L2 3221 3309 -4 1731 121 32 0 chr1_random 1749353 1749602 -7406517 + AluSg SINE Alu 1 257 -53 1146 219 8 104 chr1_random 1749602 1749872 -7406247 + L1ME3 LINE L1 5516 5742 -422 2197 112 0 3 chr1_random 1749872 1750184 -7405935 + AluSx SINE Alu 1 311 -1 1146 219 8 104 chr1_random 1750184 1750287 -7405832 + L1ME3 LINE L1 5742 5853 -311 989 254 17 9 chr1_random 1750287 1750519 -7405600 + MER76 LTR ERV 1 234 -454 349 274 88 71 chr1_random 1750569 1750865 -7405254 + MER76 LTR ERV 355 655 -33 531 220 45 123 chr1_random 1750888 1751156 -7404963 + L1ME3 LINE L1 5908 6154 -8 1839 225 15 32 chr1_random 1753895 1754424 -7401695 - L1M4 LINE L1 -1046 5598 5079 283 250 31 0 chr1_random 1754429 1754525 -7401594 - L1M4 LINE L1 -3675 2969 2871 468 35 0 0 chr1_random 1754528 1754586 -7401533 + (TA)n Simple_repeat Simple_repeat 1 58 0 410 262 50 42 chr1_random 1754632 1754953 -7401166 - L1M4 LINE L1 -3796 2848 2520 21 57 0 0 chr1_random 1755008 1755043 -7401076 + AT_rich Low_complexity Low_complexity 1 35 0 594 275 13 0 chr1_random 1755074 1755223 -7400896 + MLT1B LTR MaLR 8 158 -216 219 114 0 0 chr1_random 1755225 1755260 -7400859 + (A)n Simple_repeat Simple_repeat 1 35 0 634 284 11 16 chr1_random 1755297 1755487 -7400632 + MLT1B LTR MaLR 202 390 0 243 285 22 51 chr1_random 1755501 1755638 -7400481 - L1M4 LINE L1 -4227 2419 2287 5208 237 34 49 chr1_random 1755646 1757597 -7398522 - L1M4 LINE L1 -4700 1946 15 376 347 13 37 chr1_random 1759277 1759480 -7396639 + MIR SINE MIR 13 215 -47 182 37 37 0 chr1_random 1759503 1759530 -7396589 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 3575 161 30 28 chr1_random 1760057 1760323 -7395796 + L1M2 LINE L1 4656 4920 -1380 2007 121 0 4 chr1_random 1760323 1760638 -7395481 + AluSc SINE Alu 1 314 0 3575 161 30 28 chr1_random 1760638 1761508 -7394611 + L1M2 LINE L1 4920 5786 -514 29 0 0 0 chr1_random 1764125 1764154 -7391965 + AT_rich Low_complexity Low_complexity 1 29 0 524 318 122 4 chr1_random 1764507 1764762 -7391357 + MLT1H LTR MaLR 1 285 -264 265 376 11 0 chr1_random 1764779 1764872 -7391247 + MLT1H LTR MaLR 256 349 -200 23 0 0 0 chr1_random 1764888 1764911 -7391208 + AT_rich Low_complexity Low_complexity 1 23 0 204 247 59 71 chr1_random 1765020 1765105 -7391014 + L2 LINE L2 3230 3313 0 763 108 108 0 chr1_random 1765205 1765334 -7390785 + AluSx SINE Alu 47 189 -123 22 0 0 0 chr1_random 1765387 1765409 -7390710 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr1_random 1765746 1765780 -7390339 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr1_random 1766110 1766140 -7389979 + AT_rich Low_complexity Low_complexity 1 30 0 906 250 141 43 chr1_random 1767369 1767745 -7388374 - MER77 LTR ERV1 -8 597 185 323 44 22 0 chr1_random 1768907 1768952 -7387167 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr1_random 1771060 1771081 -7385038 + AT_rich Low_complexity Low_complexity 1 21 0 2149 48 39 32 chr1_random 1771202 1771511 -7384608 + AluY SINE Alu 1 311 0 303 278 149 36 chr1_random 1771904 1772098 -7384021 - MIR SINE MIR 0 262 47 208 386 45 8 chr1_random 1772468 1772600 -7383519 - L2 LINE L2 0 3272 3136 244 156 22 0 chr1_random 1772690 1772735 -7383384 - MLT2F LTR ERVL 0 663 618 930 296 74 60 chr1_random 1772744 1773244 -7382875 - MLT2F LTR ERVL -156 507 1 24 0 0 0 chr1_random 1773827 1773851 -7382268 + AT_rich Low_complexity Low_complexity 1 24 0 371 313 87 43 chr1_random 1773902 1774132 -7381987 + MIR SINE MIR 2 241 -21 693 161 0 36 chr1_random 1774281 1774418 -7381701 + L1MA9 LINE L1 5836 5967 -345 268 241 23 23 chr1_random 1774933 1775066 -7381053 + (TA)n Simple_repeat Simple_repeat 2 134 0 29 60 0 0 chr1_random 1775234 1775284 -7380835 + AT_rich Low_complexity Low_complexity 1 50 0 3019 161 35 57 chr1_random 1776095 1776760 -7379359 - L1MA9 LINE L1 -4 6308 5659 2279 139 7 42 chr1_random 1776766 1777198 -7378921 + L1MA9 LINE L1 5254 5670 -642 544 221 0 84 chr1_random 1777576 1777601 -7378518 + MER82 DNA MER2_type 7 33 -620 2040 111 10 3 chr1_random 1777601 1777898 -7378221 - AluSq SINE Alu -14 299 1 544 221 0 84 chr1_random 1777898 1778003 -7378116 + MER82 DNA MER2_type 33 126 -527 1798 254 13 18 chr1_random 1778454 1778907 -7377212 + MER82 DNA MER2_type 202 652 -1 22 0 0 0 chr1_random 1778936 1778958 -7377161 + AT_rich Low_complexity Low_complexity 1 22 0 474 323 36 26 chr1_random 1779940 1780132 -7375987 + MIR SINE MIR 11 204 -58 302 380 16 47 chr1_random 1780305 1780434 -7375685 - MIR SINE MIR -67 141 17 32 0 0 0 chr1_random 1780712 1780744 -7375375 + AT_rich Low_complexity Low_complexity 1 32 0 30 27 0 0 chr1_random 1783015 1783052 -7373067 + AT_rich Low_complexity Low_complexity 1 37 0 2539 61 0 6 chr1_random 1783606 1783934 -7372185 - L1PA7 LINE L1 -1 6153 5828 269 308 151 7 chr1_random 1784283 1784429 -7371690 + L2 LINE L2 3106 3272 0 39 38 0 0 chr1_random 1785028 1785081 -7371038 + AT_rich Low_complexity Low_complexity 1 53 0 1760 196 58 6 chr1_random 1785461 1785808 -7370311 + MLT1A1 LTR MaLR 1 365 0 23 68 0 0 chr1_random 1785869 1785913 -7370206 + AT_rich Low_complexity Low_complexity 1 44 0 229 224 0 0 chr1_random 1785943 1785992 -7370127 + (TA)n Simple_repeat Simple_repeat 2 50 0 738 234 6 0 chr1_random 1787264 1787422 -7368697 - AluJb SINE Alu -15 297 139 1758 182 8 32 chr1_random 1787712 1788085 -7368034 + MLT1A1 LTR MaLR 2 365 0 24 32 0 0 chr1_random 1788583 1788614 -7367505 + AT_rich Low_complexity Low_complexity 1 31 0 40 67 0 0 chr1_random 1789293 1789368 -7366751 + AT_rich Low_complexity Low_complexity 1 75 0 360 0 0 0 chr1_random 1789565 1789605 -7366514 + (TC)n Simple_repeat Simple_repeat 2 41 0 324 0 0 0 chr1_random 1789604 1789640 -7366479 + (TA)n Simple_repeat Simple_repeat 1 36 0 * 2073 95 0 30 chr1_random 1789641 1789945 -7366174 - AluSx SINE Alu -17 295 1 444 333 93 39 chr1_random 1789991 1790378 -7365741 + L1ME4a LINE L1 5568 5975 -146 659 348 28 0 chr1_random 1790979 1791232 -7364887 + MIR SINE MIR 3 262 0 2005 142 0 7 chr1_random 1791267 1791570 -7364549 - AluSx SINE Alu -11 301 1 320 233 112 0 chr1_random 1792276 1792392 -7363727 + L1ME LINE L1 5705 5833 -288 518 286 108 73 chr1_random 1792773 1793442 -7362677 + L1ME4a LINE L1 5356 6047 -74 2022 85 0 18 chr1_random 1793525 1793806 -7362313 + AluY SINE Alu 5 280 -31 446 145 0 12 chr1_random 1793819 1793902 -7362217 + (GAAA)n Simple_repeat Simple_repeat 3 84 0 189 74 0 0 chr1_random 1794730 1794757 -7361362 + (CA)n Simple_repeat Simple_repeat 2 28 0 338 165 13 0 chr1_random 1796593 1796672 -7359447 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2348 88 0 0 chr1_random 1796750 1797045 -7359074 + AluSg SINE Alu 1 295 -15 30 0 0 0 chr1_random 1797084 1797114 -7359005 + AT_rich Low_complexity Low_complexity 1 30 0 254 294 66 15 chr1_random 1797180 1797316 -7358803 - L1M4 LINE L1 -3528 2618 2476 214 340 228 30 chr1_random 1797429 1797697 -7358422 - L2 LINE L2 -106 3207 2887 1118 216 9 0 chr1_random 1797697 1797919 -7358200 + AluJb SINE Alu 23 246 -66 523 322 0 6 chr1_random 1798247 1798424 -7357695 + MIR SINE MIR 79 254 -8 1378 161 8 6 chr1_random 1799599 1799970 -7356149 - L1M1 LINE L1 -743 5403 5113 2734 160 24 18 chr1_random 1799977 1800521 -7355598 + L1MA8 LINE L1 5745 6291 0 529 97 0 0 chr1_random 1800541 1800613 -7355506 + AluSg/x SINE Alu 178 249 -61 901 226 49 112 chr1_random 1800787 1801172 -7354947 + MLT1A1 LTR MaLR 1 361 -4 6489 238 24 66 chr1_random 1801178 1802980 -7353139 + MLT1A1-int LTR MaLR 3 1729 -6 1164 193 48 92 chr1_random 1802998 1803377 -7352742 + MLT1A1 LTR MaLR 4 365 0 23 68 0 0 chr1_random 1803420 1803464 -7352655 + AT_rich Low_complexity Low_complexity 1 44 0 1854 134 11 0 chr1_random 1803689 1803964 -7352155 + AluSp SINE Alu 1 278 -35 744 12 0 0 chr1_random 1803964 1804049 -7352070 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 21 0 0 0 chr1_random 1804514 1804535 -7351584 + AT_rich Low_complexity Low_complexity 1 21 0 2133 97 14 0 chr1_random 1807179 1807467 -7348652 - AluY SINE Alu -19 292 1 1513 228 134 47 chr1_random 1808263 1808810 -7347309 + MER52A LTR ERV1 1 692 -1063 8093 72 9 15 chr1_random 1808810 1809928 -7346191 + L1PA7 LINE L1 3482 4592 -1554 6487 62 6 21 chr1_random 1809938 1810826 -7345293 + L1PA7 LINE L1 5280 6153 -1 13737 169 51 32 chr1_random 1810826 1811528 -7344591 + MER41-int LTR ERV1 2615 3302 -3694 1915 138 0 7 chr1_random 1811528 1811817 -7344302 - AluSx SINE Alu -13 299 13 13737 169 51 32 chr1_random 1811817 1813525 -7342594 + MER41-int LTR ERV1 3302 4976 -2020 2360 90 0 7 chr1_random 1813525 1813826 -7342293 + AluY SINE Alu 1 299 -12 13737 169 51 32 chr1_random 1813826 1814490 -7341629 + MER41-int LTR ERV1 4976 5626 -1370 2133 121 0 6 chr1_random 1814490 1814803 -7341316 + AluY SINE Alu 1 311 0 13737 169 51 32 chr1_random 1814803 1815284 -7340835 + MER41-int LTR ERV1 5626 6993 -3 6890 213 29 11 chr1_random 1815348 1816817 -7339302 + MER52A LTR ERV1 204 1755 0 25 0 0 0 chr1_random 1817803 1817828 -7338291 + AT_rich Low_complexity Low_complexity 1 25 0 1347 249 115 16 chr1_random 1818254 1818679 -7337440 + MLT1C LTR MaLR 1 467 0 668 209 5 59 chr1_random 1818869 1819056 -7337063 - AluJb SINE Alu -3 309 133 245 287 21 32 chr1_random 1819737 1819831 -7336288 + MLT1J2 LTR MaLR 91 183 -267 202 345 57 66 chr1_random 1820124 1820425 -7335694 - L2 LINE L2 -4 3309 3012 1068 314 95 38 chr1_random 1820462 1820779 -7335340 - L2 LINE L2 -363 2951 2654 468 0 0 0 chr1_random 1820779 1820831 -7335288 + (TA)n Simple_repeat Simple_repeat 2 53 0 1068 314 95 38 chr1_random 1820831 1821226 -7334893 - L2 LINE L2 -660 2654 2198 438 241 41 41 chr1_random 1821284 1821429 -7334690 - MER97b DNA MER1_type? -8 1045 901 1302 212 10 101 chr1_random 1821449 1821836 -7334283 + MLT1B LTR MaLR 1 352 -38 25 0 0 0 chr1_random 1821840 1821865 -7334254 + AT_rich Low_complexity Low_complexity 1 25 0 994 279 83 12 chr1_random 1821900 1822320 -7333799 - MER97a DNA MER1_type? -97 797 348 436 252 102 0 chr1_random 1822426 1822553 -7333566 - MER97c DNA MER1_type? -940 150 11 703 290 69 59 chr1_random 1822553 1822960 -7333159 - L2 LINE L2 -1270 2044 1634 28 29 0 0 chr1_random 1823437 1823472 -7332647 + AT_rich Low_complexity Low_complexity 1 35 0 2721 235 67 39 chr1_random 1826238 1827485 -7328634 + Charlie5 DNA MER1_type 928 2278 -346 1541 45 135 111 chr1_random 1827485 1827774 -7328345 - AluY SINE Alu -15 296 1 2721 235 67 39 chr1_random 1827774 1828126 -7327993 + Charlie5 DNA MER1_type 2278 2619 -5 254 336 125 21 chr1_random 1828664 1828991 -7327128 - L2 LINE L2 -1177 2137 1777 327 78 0 0 chr1_random 1829122 1829173 -7326946 + (A)n Simple_repeat Simple_repeat 1 51 0 372 133 17 0 chr1_random 1829605 1829665 -7326454 - L1MC/D LINE L1 -826 5507 5447 183 182 0 0 chr1_random 1830499 1830532 -7325587 - L2 LINE L2 -1 3312 3280 1587 173 6 10 chr1_random 1830618 1830930 -7325189 - AluY SINE Alu 0 311 1 25 31 0 0 chr1_random 1832070 1832102 -7324017 + AT_rich Low_complexity Low_complexity 1 32 0 2487 111 8 0 chr1_random 1832160 1832512 -7323607 - THE1A LTR MaLR 0 355 1 10761 107 12 13 chr1_random 1832512 1834093 -7322026 - THE1A-int LTR MaLR 0 1580 1 2661 88 6 0 chr1_random 1834093 1834446 -7321673 - THE1A LTR MaLR 0 355 1 909 205 89 0 chr1_random 1834762 1834952 -7321167 + MLT2B1 LTR ERVL 111 317 -203 803 223 23 0 chr1_random 1834926 1835101 -7321018 + MLT2B2 LTR ERVL 337 515 0 * 534 283 45 25 chr1_random 1835548 1835746 -7320373 - MER58A DNA MER1_type -22 202 1 671 337 35 25 chr1_random 1836243 1836525 -7319594 + MLT1I LTR MaLR 104 388 -21 241 216 0 0 chr1_random 1836706 1836757 -7319362 + L2 LINE L2 3261 3311 -2 331 266 38 0 chr1_random 1836800 1836879 -7319240 + HsTC2 DNA Tc2 76 157 -1741 2360 244 16 31 chr1_random 1836882 1837497 -7318622 - LTR27 LTR ERV1 0 636 31 794 179 6 35 chr1_random 1837545 1837718 -7318401 + MER44D DNA MER2_type 2 439 -170 * 1034 114 14 101 chr1_random 1837709 1837928 -7318191 + MER44D DNA MER2_type 395 594 -11 28 0 0 0 chr1_random 1838191 1838219 -7317900 + AT_rich Low_complexity Low_complexity 1 28 0 240 295 134 18 chr1_random 1839199 1839311 -7316808 + MLT1I LTR MaLR 107 231 -178 252 0 0 0 chr1_random 1840628 1840656 -7315463 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr1_random 1840689 1840715 -7315404 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr1_random 1841943 1841971 -7314148 + (CA)n Simple_repeat Simple_repeat 2 29 0 337 207 45 27 chr1_random 1842917 1843028 -7313091 - MER103 DNA DNA -3 163 51 4948 131 23 0 chr1_random 1843108 1843889 -7312230 - L1PA10 LINE L1 -11 6157 5359 4990 155 2 10 chr1_random 1843895 1844768 -7311351 + L1PA10 LINE L1 4492 5357 -789 6874 76 28 22 chr1_random 1844817 1846573 -7309546 - L1PA7 LINE L1 -6 6148 4362 241 291 97 39 chr1_random 1846959 1847062 -7309057 - L2 LINE L2 -33 3280 3172 593 216 50 14 chr1_random 1848515 1848654 -7307465 + L1M1 LINE L1 13 156 -7409 2881 85 5 8 chr1_random 1848654 1849055 -7307064 - L1PA8A LINE L1 0 6131 5732 415 63 0 16 chr1_random 1849056 1849119 -7307000 + L1PA8A LINE L1 5023 5084 -1062 3112 86 28 17 chr1_random 1849122 1849532 -7306587 + L1PA8A LINE L1 5266 5683 -448 2417 72 3 3 chr1_random 1849532 1849837 -7306282 + AluY SINE Alu 1 305 -6 3112 86 28 17 chr1_random 1849837 1849889 -7306230 + L1PA8A LINE L1 5683 5733 -398 * 7807 212 34 27 chr1_random 1849877 1852149 -7303970 + L1M1 LINE L1 143 2730 -4835 14006 190 36 9 chr1_random 1852178 1855837 -7300282 + L1PA12 LINE L1 609 4097 -3487 185 331 119 25 chr1_random 1855984 1856262 -7299857 - L2 LINE L2 -1024 2290 1987 1086 283 86 20 chr1_random 1856487 1857297 -7298822 + L1M1 LINE L1 3657 4520 -3045 1502 251 82 35 chr1_random 1857729 1858351 -7297768 + MER99 DNA DNA 104 754 -74 200 135 27 0 chr1_random 1859147 1859184 -7296935 + A-rich Low_complexity Low_complexity 5 42 0 234 0 0 0 chr1_random 1859223 1859249 -7296870 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 670 297 54 9 chr1_random 1859686 1859908 -7296211 + MIR SINE MIR 31 262 0 2020 124 3 3 chr1_random 1860044 1860342 -7295777 + AluSx SINE Alu 1 298 -14 28 29 0 0 chr1_random 1861192 1861227 -7294892 + AT_rich Low_complexity Low_complexity 1 35 0 1358 232 39 39 chr1_random 1861320 1861511 -7294608 + L1ME1 LINE L1 5531 5721 -445 2023 142 76 20 chr1_random 1861511 1861855 -7294264 + THE1B LTR MaLR 2 364 0 1358 232 39 39 chr1_random 1861855 1862124 -7293995 + L1ME1 LINE L1 5720 5991 -175 1607 224 60 9 chr1_random 1862165 1862629 -7293490 + Charlie1 DNA MER1_type 1704 2191 -570 3109 196 25 2 chr1_random 1863212 1863803 -7292316 + MER6A DNA MER2_type 1 605 0 186 323 0 16 chr1_random 1864647 1864709 -7291410 + MIR SINE MIR 100 160 -102 199 274 39 88 chr1_random 1865329 1865431 -7290688 - MER5A DNA MER1_type -45 144 48 24 32 0 0 chr1_random 1865792 1865823 -7290296 + AT_rich Low_complexity Low_complexity 1 31 0 875 213 58 105 chr1_random 1865824 1866204 -7289915 - MLT1B LTR MaLR 0 390 29 21 0 0 0 chr1_random 1867216 1867237 -7288882 + AT_rich Low_complexity Low_complexity 1 21 0 526 270 119 0 chr1_random 1869167 1869326 -7286793 - MER45A DNA AcHobo 0 178 1 394 268 167 0 chr1_random 1869575 1869773 -7286346 + MLT1H1 LTR MaLR 325 555 0 326 267 13 0 chr1_random 1869961 1870036 -7286083 + MLT1D LTR MaLR 6 81 -424 700 236 34 17 chr1_random 1870038 1870216 -7285903 - MLT1C LTR MaLR -4 463 283 2364 138 8 3 chr1_random 1870225 1870587 -7285532 + THE1B LTR MaLR 1 364 0 8567 115 70 82 chr1_random 1870587 1872180 -7283939 + THE1B-int LTR MaLR 1 1574 -6 2564 113 8 6 chr1_random 1872185 1872548 -7283571 + THE1B LTR MaLR 1 364 0 302 250 37 46 chr1_random 1872607 1872715 -7283404 - MLT1C LTR MaLR -295 172 66 800 217 35 55 chr1_random 1872764 1873169 -7282950 + MLT1D LTR MaLR 66 505 0 295 290 0 0 chr1_random 1873995 1874064 -7282055 - MLT1J1 LTR MaLR -313 133 65 285 228 87 11 chr1_random 1875149 1875241 -7280878 + L2 LINE L2 2872 2970 -343 283 163 0 0 chr1_random 1875688 1875731 -7280388 + L2 LINE L2 3262 3304 -9 205 322 33 11 chr1_random 1875917 1876007 -7280112 - L2 LINE L2 -13 3300 3209 231 260 24 16 chr1_random 1877087 1877210 -7278909 + (TA)n Simple_repeat Simple_repeat 2 125 0 577 297 19 29 chr1_random 1877440 1877649 -7278470 - MIR SINE MIR -45 217 11 424 288 135 60 chr1_random 1878070 1878556 -7277563 + L2 LINE L2 2728 3247 -66 263 239 196 0 chr1_random 1879044 1879136 -7276983 + MIR3 SINE MIR 98 207 -1 206 196 18 36 chr1_random 1879276 1879332 -7276787 + (CAGAGA)n Simple_repeat Simple_repeat 2 56 0 196 53 53 0 chr1_random 1879552 1879590 -7276529 + (TA)n Simple_repeat Simple_repeat 2 41 0 1719 163 0 28 chr1_random 1879593 1879881 -7276238 - AluSx SINE Alu -31 281 2 26 50 0 0 chr1_random 1879972 1880012 -7276107 + AT_rich Low_complexity Low_complexity 1 40 0 357 78 0 94 chr1_random 1880576 1880640 -7275479 + MER11A LTR ERVK 1 58 -1208 6513 80 8 7 chr1_random 1880640 1881513 -7274606 + HERVK11 LTR ERVK 5066 5939 -2014 734 24 0 0 chr1_random 1881514 1881598 -7274521 - HERVK11 LTR ERVK -1201 6752 6669 7714 58 29 4 chr1_random 1881598 1882574 -7273545 + HERVK11 LTR ERVK 6954 7953 0 4293 162 28 42 chr1_random 1882574 1883570 -7272549 + MER11C LTR ERVK 1 1071 0 23 0 0 0 chr1_random 1885086 1885109 -7271010 + AT_rich Low_complexity Low_complexity 1 23 0 25954 52 5 0 chr1_random 1885427 1888712 -7267407 + L1PA4 LINE L1 761 4061 -2085 11919 37 1 0 chr1_random 1888723 1890915 -7265204 + L1PA4 LINE L1 3959 6151 -4 1593 169 7 31 chr1_random 1891032 1891361 -7264758 - AluJb SINE Alu 0 322 1 252 232 152 20 chr1_random 2091701 2091800 -7064319 - MIR SINE MIR -116 146 35 262 295 215 12 chr1_random 2091942 2092152 -7063967 + MIR SINE MIR 4 251 -11 239 247 0 78 chr1_random 2092824 2092901 -7063218 + MIR SINE MIR 80 150 -112 683 299 102 21 chr1_random 2093415 2093749 -7062370 + MLT2B2 LTR ERVL 91 451 -64 668 111 32 0 chr1_random 2093749 2093875 -7062244 + (CA)n Simple_repeat Simple_repeat 2 131 0 291 125 0 0 chr1_random 2093875 2093923 -7062196 + MLT2D LTR ERVL 367 414 0 499 244 66 3 chr1_random 2095347 2095502 -7060617 + MIR SINE MIR 1 164 -62 712 279 46 80 chr1_random 2095612 2095963 -7060156 - L2 LINE L2 -1437 1877 1539 25 0 0 0 chr1_random 2096480 2096505 -7059614 + AT_rich Low_complexity Low_complexity 1 25 0 2396 86 33 78 chr1_random 2096505 2096644 -7059475 - L1PB1 LINE L1 -1 6150 6006 2301 108 0 3 chr1_random 2096644 2096951 -7059168 - AluSc SINE Alu -3 306 1 2396 86 33 78 chr1_random 2096951 2097232 -7058887 - L1PB1 LINE L1 -145 6006 5749 238 254 0 0 chr1_random 2097262 2097321 -7058798 + (TG)n Simple_repeat Simple_repeat 2 60 0 419 201 92 6 chr1_random 2097328 2097502 -7058617 - Charlie4 DNA MER1_type -24 1937 1749 6036 174 20 1 chr1_random 2097606 2098655 -7057464 - MER52-int LTR ERV1 -3713 3378 2310 256 309 12 12 chr1_random 2098788 2098869 -7057250 - L2 LINE L2 -4 3309 3229 430 148 76 8 chr1_random 2099267 2099373 -7056746 + MER61E LTR ERV1 4 85 -484 499 191 33 113 chr1_random 2099555 2099622 -7056497 + LTR25 LTR ERV1 340 411 -848 2426 80 0 0 chr1_random 2099622 2099924 -7056195 - AluY SINE Alu -9 302 1 499 191 33 113 chr1_random 2099924 2100189 -7055930 + LTR25 LTR ERV1 411 1232 -27 468 244 38 19 chr1_random 2101107 2101267 -7054852 + MIR3 SINE MIR 40 202 -6 212 253 54 102 chr1_random 2101845 2102031 -7054088 - L2 LINE L2 -203 3069 2893 1388 234 111 28 chr1_random 2103062 2103486 -7052633 + MLT1C LTR MaLR 8 466 -1 1146 49 0 0 chr1_random 2103868 2104011 -7052108 - L1P3 LINE L1 -503 5651 5509 522 224 66 36 chr1_random 2104387 2104583 -7051536 + MER3 DNA MER1_type 7 208 -1 1623 174 40 0 chr1_random 2105419 2105740 -7050379 + MER47A DNA MER2_type 1 334 -32 239 312 108 0 chr1_random 2106096 2106189 -7049930 - LTR16C LTR ERVL -232 259 157 2617 108 6 0 chr1_random 2106266 2106628 -7049491 - THE1B LTR MaLR 0 364 1 2749 50 0 121 chr1_random 2106734 2107172 -7048947 + L1PA7 LINE L1 5767 6151 -3 794 295 84 46 chr1_random 2107578 2108386 -7047733 - L1MC/D LINE L1 -748 5678 4954 2231 77 3 0 chr1_random 2109062 2109348 -7046771 - AluY SINE Alu -24 287 1 200 273 0 0 chr1_random 2109489 2109533 -7046586 + CT-rich Low_complexity Low_complexity 3 46 0 373 253 0 0 chr1_random 2109769 2109852 -7046267 - MLT1H1 LTR MaLR -467 88 6 744 299 40 68 chr1_random 2110028 2110499 -7045620 - LTR16B LTR ERVL -2 462 5 531 283 40 31 chr1_random 2110841 2111080 -7045039 - L1ME LINE L1 -463 5707 5463 182 31 0 62 chr1_random 2111080 2111112 -7045007 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 531 283 40 31 chr1_random 2111112 2111225 -7044894 - L1ME LINE L1 -707 5463 5352 1114 181 0 0 chr1_random 2111236 2111440 -7044679 - MER2 DNA MER2_type -135 210 7 583 278 105 21 chr1_random 2111506 2111887 -7044232 + L1ME3A LINE L1 5743 6155 -15 905 236 109 39 chr1_random 2112212 2112366 -7043753 + MLT1A1 LTR MaLR 1 143 -222 237 33 0 0 chr1_random 2112366 2112396 -7043723 + (TC)n Simple_repeat Simple_repeat 2 31 0 905 236 109 39 chr1_random 2112396 2112571 -7043548 + MLT1A1 LTR MaLR 143 353 -12 498 231 50 25 chr1_random 2112734 2112894 -7043225 - MLT1L LTR MaLR -331 284 121 1591 253 65 37 chr1_random 2113012 2113842 -7042277 - L1MC/D LINE L1 -3012 3414 2562 230 257 104 54 chr1_random 2114007 2114229 -7041890 - L1MC/D LINE L1 -4825 1601 1369 25 0 0 0 chr1_random 2114251 2114276 -7041843 + AT_rich Low_complexity Low_complexity 1 25 0 341 280 37 37 chr1_random 2114507 2114696 -7041423 - L1M4 LINE L1 -2392 3754 3566 1291 186 38 35 chr1_random 2114741 2115059 -7041060 - MER31B LTR ERV1 -107 359 41 387 310 174 38 chr1_random 2115114 2115179 -7040940 - L1MC/D LINE L1 -5697 910 855 1783 162 10 10 chr1_random 2115179 2115482 -7040637 - AluSx SINE Alu -9 303 1 387 310 174 38 chr1_random 2115482 2115813 -7040306 - L1MC/D LINE L1 -5752 855 460 890 263 67 16 chr1_random 2116145 2116622 -7039497 + L1M4 LINE L1 3634 4147 -1999 320 281 61 9 chr1_random 2116625 2116739 -7039380 + L1M4 LINE L1 4210 4329 -1817 26 0 0 0 chr1_random 2116913 2116939 -7039180 + AT_rich Low_complexity Low_complexity 1 26 0 484 291 52 28 chr1_random 2116942 2117295 -7038824 + L1M4 LINE L1 4316 4682 -1464 1916 142 44 0 chr1_random 2117295 2117591 -7038528 - AluSx SINE Alu -3 309 1 484 291 52 28 chr1_random 2117591 2117659 -7038460 + L1M4 LINE L1 4682 4747 -1399 374 302 75 12 chr1_random 2118010 2118195 -7037924 + MIR SINE MIR 45 243 -19 5970 89 3 29 chr1_random 2119178 2120114 -7036005 - L1P LINE L1 -3011 3135 2224 6899 69 3 0 chr1_random 2120115 2121746 -7034373 + L1PA7 LINE L1 4518 6151 -3 5465 80 3 0 chr1_random 2121746 2122524 -7033595 + L1PA8A LINE L1 5322 6101 -30 192 332 119 42 chr1_random 2122980 2123290 -7032829 - L2 LINE L2 -113 3200 2867 231 229 31 31 chr1_random 2123667 2123763 -7032356 + Charlie7 DNA MER1_type 530 625 -1987 1854 189 51 29 chr1_random 2123900 2124349 -7031770 + LOR1b LTR ERV1 3 461 0 24 67 0 0 chr1_random 2125305 2125350 -7030769 + AT_rich Low_complexity Low_complexity 1 45 0 1308 171 4 60 chr1_random 2125708 2125959 -7030160 + AluSx SINE Alu 1 237 -75 1071 187 95 14 chr1_random 2126160 2126454 -7029665 + MER33 DNA MER1_type 3 320 -4 472 248 68 12 chr1_random 2126934 2127095 -7029024 + Charlie1b DNA MER1_type 44 213 -310 1145 224 5 5 chr1_random 2127095 2127314 -7028805 + AluJo SINE Alu 39 257 -55 768 156 94 23 chr1_random 2127345 2127601 -7028518 + Charlie1b DNA MER1_type 235 508 -15 1829 157 4 0 chr1_random 2127930 2128241 -7027878 + AluSx SINE Alu 1 312 0 993 215 14 58 chr1_random 2129278 2129571 -7026548 + LTR4 LTR ERV1 317 596 0 1630 177 3 24 chr1_random 2129858 2130197 -7025922 - L1M2 LINE L1 -537 5775 5444 645 206 12 29 chr1_random 2130193 2130363 -7025756 + L1MA9 LINE L1 5912 6078 -234 * 1396 180 50 41 chr1_random 2130399 2130761 -7025358 + THE1C LTR MaLR 11 375 0 9110 143 7 50 chr1_random 2130763 2132410 -7023709 + THE1C-int LTR MaLR 3 1579 -1 873 162 139 0 chr1_random 2132411 2132584 -7023535 + THE1C LTR MaLR 1 197 -231 1051 121 7 0 chr1_random 2132586 2132727 -7023392 + AluY SINE Alu 3 144 -167 1986 106 4 4 chr1_random 2133008 2133292 -7022827 + AluSc SINE Alu 17 300 0 189 0 0 0 chr1_random 2133312 2133333 -7022786 + (TC)n Simple_repeat Simple_repeat 1 21 0 771 175 29 35 chr1_random 2133334 2133505 -7022614 + THE1C LTR MaLR 206 375 0 788 204 11 0 chr1_random 2133513 2133694 -7022425 + L1MA9 LINE L1 6083 6265 -47 21 0 0 0 chr1_random 2134010 2134031 -7022088 + AT_rich Low_complexity Low_complexity 1 21 0 2246 71 0 0 chr1_random 2134457 2134772 -7021347 + AluY SINE Alu 17 331 0 26 50 0 0 chr1_random 2137725 2137765 -7018354 + AT_rich Low_complexity Low_complexity 1 40 0 2249 112 0 0 chr1_random 2137770 2138080 -7018039 + AluSx SINE Alu 1 310 0 2105 99 7 3 chr1_random 2138259 2138541 -7017578 + AluSq SINE Alu 6 288 -25 1558 228 117 13 chr1_random 2138651 2139121 -7016998 + MER101B LTR ERV1 1 519 -51 323 348 13 52 chr1_random 2139349 2139582 -7016537 - L1M4 LINE L1 -1018 5128 4905 315 0 0 0 chr1_random 2140578 2140613 -7015506 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr1_random 2141327 2141356 -7014763 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr1_random 2141691 2141713 -7014406 + AT_rich Low_complexity Low_complexity 1 22 0 2264 260 80 31 chr1_random 2141945 2143526 -7012593 + L1MCb LINE L1 844 2599 -3965 2012 125 7 3 chr1_random 2143609 2143904 -7012215 + AluSc SINE Alu 1 296 -13 1943 242 33 23 chr1_random 2143927 2144589 -7011530 + L1M4 LINE L1 4661 5329 -817 6159 185 10 3 chr1_random 2144693 2145807 -7010312 - Tigger2 DNA MER2_type -1153 1565 444 880 247 21 89 chr1_random 2145812 2146710 -7009409 + MER52A LTR ERV1 264 1752 -3 1905 114 0 65 chr1_random 2146712 2147018 -7009101 + AluSg1 SINE Alu 1 286 -23 216 0 0 0 chr1_random 2147021 2147045 -7009074 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4487 164 60 16 chr1_random 2147058 2147909 -7008210 + HUERS-P2 LTR ERV1 1 888 -6203 3906 187 32 36 chr1_random 2147930 2148229 -7007890 + HUERS-P2 LTR ERV1 1003 1302 -1973 2020 118 86 18 chr1_random 2148229 2148568 -7007551 + THE1B LTR MaLR 1 362 -2 3906 187 32 36 chr1_random 2148568 2149327 -7006792 + HUERS-P2 LTR ERV1 1302 2277 -998 460 132 33 0 chr1_random 2149758 2149849 -7006270 + CT-rich Low_complexity Low_complexity 4 97 0 3813 125 3 53 chr1_random 2149849 2150028 -7006091 - L1MA4A LINE L1 -12 6291 6105 2141 121 0 0 chr1_random 2150028 2150310 -7005809 + AluSc SINE Alu 1 282 -27 201 39 0 0 chr1_random 2150310 2150336 -7005783 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 3813 125 3 53 chr1_random 2150336 2150850 -7005269 - L1MA4A LINE L1 -196 6107 5632 568 245 0 14 chr1_random 2150850 2150989 -7005130 + FLAM_A SINE Alu 2 138 -4 645 164 20 82 chr1_random 2150989 2151032 -7005087 - L1MA4A LINE L1 -658 5642 5598 2093 126 0 0 chr1_random 2151032 2151325 -7004794 - AluY SINE Alu -15 296 4 645 164 20 82 chr1_random 2151325 2151427 -7004692 - L1MA4A LINE L1 -702 5598 5506 554 261 63 14 chr1_random 2151697 2151981 -7004138 - L1MEc LINE L1 -5420 976 679 409 372 62 36 chr1_random 2152239 2152626 -7003493 - L1MEc LINE L1 -5963 433 37 610 314 40 37 chr1_random 2152636 2153012 -7003107 - L1ME LINE L1 -5173 897 521 211 354 52 10 chr1_random 2153568 2153664 -7002455 + L2 LINE L2 3172 3271 -1 4274 172 74 14 chr1_random 2153769 2154617 -7001502 - MER54A LTR ERVL 0 901 3 193 296 70 0 chr1_random 2155007 2155078 -7001041 - L2 LINE L2 -4 3309 3234 411 265 61 7 chr1_random 2156058 2156205 -6999914 - L2 LINE L2 -1002 2312 2158 337 353 122 23 chr1_random 2157026 2157247 -6998872 + L2 LINE L2 2450 2692 -622 600 314 10 29 chr1_random 2157849 2158053 -6998066 + L2 LINE L2 2710 2909 -405 2454 272 68 25 chr1_random 2158153 2159423 -6996696 - L1M4 LINE L1 -2227 3919 2596 2231 247 72 39 chr1_random 2159548 2160963 -6995156 - L1ME1 LINE L1 -5 6161 4676 2274 98 7 0 chr1_random 2160963 2161268 -6994851 - AluSx SINE Alu -5 307 1 2231 247 72 39 chr1_random 2161268 2161648 -6994471 - L1ME1 LINE L1 -1490 4676 4310 2448 212 28 10 chr1_random 2161648 2162153 -6993966 - MLT2B2 LTR ERVL 0 515 2 421 264 28 14 chr1_random 2162154 2162298 -6993821 - L1ME1 LINE L1 -1833 4313 4168 230 219 0 0 chr1_random 2162433 2162474 -6993645 + MER9 LTR ERVK 388 428 -83 2459 66 0 0 chr1_random 2163056 2163360 -6992759 + AluY SINE Alu 1 304 -7 28 86 0 0 chr1_random 2163633 2163703 -6992416 + AT_rich Low_complexity Low_complexity 1 70 0 1906 147 10 13 chr1_random 2163742 2164055 -6992064 - AluSx SINE Alu 0 312 1 474 281 148 24 chr1_random 2164658 2164833 -6991286 + L1ME1 LINE L1 1126 1278 -5145 207 0 0 0 chr1_random 2164833 2164856 -6991263 + (CA)n Simple_repeat Simple_repeat 2 24 0 474 281 148 24 chr1_random 2164856 2165018 -6991101 + L1ME1 LINE L1 1278 1505 -4918 513 241 93 34 chr1_random 2165157 2165529 -6990590 + L1ME1 LINE L1 2957 3389 -3552 339 191 143 19 chr1_random 2165687 2165792 -6990327 - L1ME4a LINE L1 0 6121 6004 3662 166 16 8 chr1_random 2165797 2166417 -6989702 + L1M3f LINE L1 6 630 -4698 3405 171 33 23 chr1_random 2166421 2167763 -6988356 - L1MA4 LINE L1 -157 6143 4612 1487 208 19 7 chr1_random 2167763 2168142 -6987977 + LTR47A LTR ERVL 1 452 0 1711 172 9 0 chr1_random 2168142 2168491 -6987628 - L1MA4 LINE L1 -1530 4616 4265 2265 82 3 0 chr1_random 2168664 2168967 -6987152 + AluSg SINE Alu 1 304 0 3688 205 77 8 chr1_random 2170685 2171479 -6984640 - MER21B LTR ERV1 -14 849 1 195 42 0 0 chr1_random 2171772 2171796 -6984323 + (A)n Simple_repeat Simple_repeat 1 24 0 834 356 42 69 chr1_random 2172129 2172867 -6983252 + L1ME1 LINE L1 3949 4666 -2275 1899 253 44 32 chr1_random 2172868 2173869 -6982250 + L1ME1 LINE L1 5426 6436 -525 1059 273 18 9 chr1_random 2173870 2174200 -6981919 + L1ME1 LINE L1 6583 6915 -46 211 194 0 0 chr1_random 2174556 2174592 -6981527 + L2 LINE L2 3236 3271 -1 1493 299 67 21 chr1_random 2174767 2175442 -6980677 + MER20B DNA MER1_type 26 731 -52 290 215 38 25 chr1_random 2176048 2176127 -6979992 - Tigger5 DNA MER2_type -1 2322 2243 * 448 176 0 0 chr1_random 2176123 2176197 -6979922 + Tigger5 DNA MER2_type 2247 2320 -3 316 254 14 0 chr1_random 2176197 2176267 -6979852 - Tigger5 DNA MER2_type -2245 78 8 572 360 97 22 chr1_random 2176296 2176455 -6979664 - L2 LINE L2 -41 3272 3126 1319 244 14 0 chr1_random 2176455 2176746 -6979373 + AluJo SINE Alu 1 295 -17 572 360 97 22 chr1_random 2176746 2177000 -6979119 - L2 LINE L2 -187 3126 2828 371 310 102 20 chr1_random 2178467 2178664 -6977455 + MLT1L LTR MaLR 183 395 -220 27 49 0 0 chr1_random 2178850 2178891 -6977228 + AT_rich Low_complexity Low_complexity 1 41 0 311 339 74 0 chr1_random 2179074 2179195 -6976924 + L2 LINE L2 3137 3266 -6 2398 108 0 0 chr1_random 2179375 2179682 -6976437 + AluSc SINE Alu 1 307 -2 30 0 0 0 chr1_random 2180864 2180894 -6975225 + AT_rich Low_complexity Low_complexity 1 30 0 519 211 86 23 chr1_random 2181523 2181651 -6974468 - AluJb SINE Alu -174 138 3 3714 189 1 1 chr1_random 2181703 2182358 -6973761 + Tigger1 DNA MER2_type 7 661 -1757 1291 205 25 31 chr1_random 2182497 2182853 -6973266 + LTR10B LTR ERV1 157 547 0 * 2436 126 57 12 chr1_random 2182853 2183274 -6972845 + Tigger1 DNA MER2_type 660 1099 -1319 7644 138 7 3 chr1_random 2183312 2184497 -6971622 + HERVK LTR ERVK 6053 7241 -2 4067 192 22 47 chr1_random 2184499 2185493 -6970626 + LTR5 LTR ERVK 1 969 0 8058 135 14 12 chr1_random 2185496 2186793 -6969326 + Tigger1 DNA MER2_type 1101 2402 -16 2088 140 33 33 chr1_random 2186793 2187157 -6968962 + THE1B LTR MaLR 1 364 0 8058 135 14 12 chr1_random 2187157 2187175 -6968944 + Tigger1 DNA MER2_type 2402 2418 0 241 182 0 0 chr1_random 2187796 2187840 -6968279 - L1P3 LINE L1 -4017 2444 2401 6785 191 18 26 chr1_random 2187842 2189988 -6966131 - L1P3 LINE L1 -4276 2185 2 355 267 43 126 chr1_random 2190031 2190405 -6965714 + L1MC4a LINE L1 3877 4219 -1927 574 164 19 0 chr1_random 2190415 2190519 -6965600 - FLAM_A SINE Alu -8 134 29 542 340 47 26 chr1_random 2190539 2190968 -6965151 + L1MC4a LINE L1 4211 4648 -1498 559 228 168 38 chr1_random 2191185 2191648 -6964471 + L1MC4a LINE L1 5353 5891 -1917 487 296 54 41 chr1_random 2193778 2194072 -6962047 + MLT1J1 LTR MaLR 3 300 -146 21 0 0 0 chr1_random 2194932 2194953 -6961166 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chr1_random 2195053 2195083 -6961036 + (CA)n Simple_repeat Simple_repeat 1 30 0 8878 134 16 8 chr1_random 2195207 2196690 -6959429 + L1P LINE L1 3839 5332 -814 * 9372 91 8 2 chr1_random 2196680 2198028 -6958091 - L1P LINE L1 -1669 4477 3122 432 224 24 82 chr1_random 2198149 2198319 -6957800 - Charlie7 DNA MER1_type -2410 202 43 389 191 35 35 chr1_random 2198346 2198461 -6957658 + L1MA7 LINE L1 6177 6291 0 1602 206 7 0 chr1_random 2198763 2199050 -6957069 + AluJb SINE Alu 1 289 -23 2277 114 0 0 chr1_random 2199075 2199374 -6956745 + AluSx SINE Alu 1 299 -13 230 0 0 32 chr1_random 2199378 2199409 -6956710 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr1_random 2201093 2201115 -6955004 + AT_rich Low_complexity Low_complexity 1 22 0 425 271 8 8 chr1_random 2201421 2201539 -6954580 + MLT2E LTR ERVL 38 155 -473 1992 156 78 22 chr1_random 2201599 2202153 -6953966 - MER51B LTR ERV1 -3 374 1 581 261 35 110 chr1_random 2202162 2202507 -6953612 + MLT2F LTR ERVL 253 571 -92 306 239 88 26 chr1_random 2202527 2202640 -6953479 + MLT2E LTR ERVL 470 589 -39 3655 199 94 9 chr1_random 2202986 2203780 -6952339 + MER6 DNA MER2_type 1 862 -3 226 273 45 23 chr1_random 2204054 2204142 -6951977 - MIR SINE MIR -56 206 117 22 56 0 0 chr1_random 2204305 2204341 -6951778 + AT_rich Low_complexity Low_complexity 1 36 0 1733 198 110 117 chr1_random 2204450 2205315 -6950804 - LTR28 LTR ERV1 0 1020 17 432 0 0 0 chr1_random 2205606 2205654 -6950465 + (TA)n Simple_repeat Simple_repeat 2 49 0 357 43 0 0 chr1_random 2206278 2206325 -6949794 + (TG)n Simple_repeat Simple_repeat 2 48 0 188 266 277 0 chr1_random 2207081 2207269 -6948850 - L2 LINE L2 -1212 2102 1863 365 270 0 36 chr1_random 2207294 2207405 -6948714 + MIR SINE MIR 141 247 -15 23 33 0 0 chr1_random 2208311 2208341 -6947778 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr1_random 2208407 2208436 -6947683 + AT_rich Low_complexity Low_complexity 1 29 0 299 44 22 0 chr1_random 2208649 2208694 -6947425 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 23 0 0 0 chr1_random 2209430 2209453 -6946666 + AT_rich Low_complexity Low_complexity 1 23 0 2556 51 0 10 chr1_random 2210397 2210709 -6945410 - AluY SINE Alu -2 309 1 23 0 0 0 chr1_random 2211083 2211106 -6945013 + AT_rich Low_complexity Low_complexity 1 23 0 7657 198 13 17 chr1_random 2211278 2214001 -6942118 - L1PB3 LINE L1 0 6154 3444 439 332 25 21 chr1_random 2214969 2215294 -6940825 - L1MEc LINE L1 -4758 1638 1313 2504 100 0 3 chr1_random 2215553 2215914 -6940205 - L1PB1 LINE L1 -1 6150 5791 461 149 17 40 chr1_random 2215934 2216108 -6940011 + (TA)n Simple_repeat Simple_repeat 1 170 0 3900 92 7 5 chr1_random 2216108 2216735 -6939384 - L1PB1 LINE L1 -360 5791 5165 3140 204 64 35 chr1_random 2216735 2217616 -6938503 + L1PB1 LINE L1 4249 5154 -992 508 342 122 33 chr1_random 2217665 2218124 -6937995 - L1MEc LINE L1 -5189 1016 517 245 315 11 0 chr1_random 2218384 2218476 -6937643 - L1MEc LINE L1 -5966 239 147 24 32 0 0 chr1_random 2218558 2218589 -6937530 + AT_rich Low_complexity Low_complexity 1 31 0 477 202 11 0 chr1_random 2218638 2218732 -6937387 + MSTC LTR MaLR 1 95 -333 310 310 53 49 chr1_random 2219066 2219257 -6936862 - MLT1J LTR MaLR -261 250 56 3821 71 8 2 chr1_random 2219257 2219789 -6936330 + L1PA8 LINE L1 5651 6172 0 310 310 53 49 chr1_random 2219789 2219823 -6936296 - MLT1J LTR MaLR -455 56 24 413 271 10 0 chr1_random 2220198 2220294 -6935825 - L2 LINE L2 -17 3296 3200 421 366 6 6 chr1_random 2221800 2221964 -6934155 - L2 LINE L2 -949 2365 2202 368 303 79 84 chr1_random 2222019 2222422 -6933697 + HAL1 LINE L1 1 401 -2106 2361 87 3 7 chr1_random 2222751 2223060 -6933059 - AluSq SINE Alu -1 312 5 6209 92 11 0 chr1_random 2223354 2224461 -6931658 - L1PA10 LINE L1 0 6168 5040 915 148 6 50 chr1_random 2224494 2224676 -6931443 - MER50 LTR ERV1 -64 670 497 2255 142 0 3 chr1_random 2224677 2225058 -6931061 - L1PA10 LINE L1 -1089 5057 4678 4823 131 16 0 chr1_random 2225059 2225829 -6930290 + L1PA10 LINE L1 3885 4666 -1480 225 0 0 0 chr1_random 2226042 2226067 -6930052 + (CA)n Simple_repeat Simple_repeat 2 26 0 321 338 66 7 chr1_random 2226077 2226228 -6929891 + HAL1 LINE L1 740 899 -1608 269 307 0 0 chr1_random 2226232 2226307 -6929812 + GA-rich Low_complexity Low_complexity 3 77 0 252 286 75 30 chr1_random 2226353 2226486 -6929633 - L2 LINE L2 -1150 2164 2026 452 276 115 10 chr1_random 2226493 2226685 -6929434 + MLT1J2 LTR MaLR 2 213 -237 442 296 44 13 chr1_random 2226728 2226887 -6929232 + MLT1J1 LTR MaLR 283 446 0 2381 95 0 0 chr1_random 2227778 2228084 -6928035 + AluSc SINE Alu 1 306 -3 1793 291 52 7 chr1_random 2228356 2228927 -6927192 - L2 LINE L2 -493 2821 2225 315 370 19 0 chr1_random 2230169 2230331 -6925788 - Charlie8 DNA MER1_type -1489 928 764 294 29 0 0 chr1_random 2230376 2230411 -6925708 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 646 75 11 0 chr1_random 2230420 2230514 -6925605 + AluY SINE Alu 215 309 -2 21 0 0 0 chr1_random 2230669 2230690 -6925429 + AT_rich Low_complexity Low_complexity 1 21 0 2054 129 0 11 chr1_random 2231569 2231881 -6924238 - AluSp SINE Alu 0 309 1 786 306 57 32 chr1_random 2232379 2232781 -6923338 - LTR16A LTR ERVL -18 432 21 197 266 16 16 chr1_random 2233983 2234047 -6922072 + MIR3 SINE MIR 134 197 -11 338 343 69 71 chr1_random 2234062 2234215 -6921904 + L1MEd LINE L1 285 437 -5682 1755 120 32 90 chr1_random 2234215 2234680 -6921439 + LTR21B LTR ERV1 1 438 0 338 343 69 71 chr1_random 2234680 2234989 -6921130 + L1MEd LINE L1 437 746 -5373 702 175 7 0 chr1_random 2235483 2235626 -6920493 + L1MB3 LINE L1 6036 6179 -4 1908 140 21 0 chr1_random 2236297 2236599 -6919520 + AluSx SINE Alu 1 308 0 2304 133 20 6 chr1_random 2236812 2237157 -6918962 + THE1B LTR MaLR 1 350 -14 1031 93 0 0 chr1_random 2237168 2237307 -6918812 - MLT2A2 LTR ERVL 0 453 315 11245 72 5 9 chr1_random 2287307 2288069 -6868050 + L1PA6 LINE L1 3758 4522 -1632 7722 24 0 0 chr1_random 2288069 2289165 -6866954 + L1PA3 LINE L1 5059 6154 -1 11245 72 5 9 chr1_random 2289165 2290805 -6865314 + L1PA6 LINE L1 4522 6148 -6 203 0 37 0 chr1_random 2290951 2290978 -6865141 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 22 35 0 0 chr1_random 2291061 2291090 -6865029 + AT_rich Low_complexity Low_complexity 1 29 0 566 314 231 6 chr1_random 2291625 2292170 -6863949 + L2 LINE L2 2196 2863 -451 258 322 0 46 chr1_random 2293184 2293271 -6862848 + MIR SINE MIR 60 142 -66 265 352 111 9 chr1_random 2293912 2294020 -6862099 - L2 LINE L2 -3 3269 3151 2240 102 23 7 chr1_random 2294296 2294600 -6861519 + AluSg1 SINE Alu 1 309 0 180 358 74 14 chr1_random 2296699 2296847 -6859272 + L2 LINE L2 2671 2827 -487 1417 168 119 90 chr1_random 2296968 2297313 -6858806 - MLT1A1 LTR MaLR -10 355 1 598 212 162 45 chr1_random 2297313 2297511 -6858608 - L1MD3 LINE L1 -181 7814 7594 322 180 36 18 chr1_random 2297926 2298037 -6858082 + CT-rich Low_complexity Low_complexity 3 115 0 671 241 63 6 chr1_random 2298049 2298207 -6857912 - MER3 DNA MER1_type -41 168 2 320 282 144 23 chr1_random 2298438 2298612 -6857507 - MIR SINE MIR -19 243 49 300 333 114 38 chr1_random 2298665 2299058 -6857061 - HAL1 LINE L1 -1205 1302 880 210 262 16 0 chr1_random 2299067 2299128 -6856991 + CT-rich Low_complexity Low_complexity 4 65 0 553 207 0 0 chr1_random 2301269 2301295 -6854824 - L1MA9 LINE L1 -22 6290 6265 1889 193 66 17 chr1_random 2301295 2301739 -6854380 - L1MA9 LINE L1 -44 6122 5697 1905 246 96 38 chr1_random 2302153 2303068 -6853051 + L1ME1 LINE L1 4394 5361 -785 851 193 37 118 chr1_random 2303088 2303436 -6852683 + L1ME1 LINE L1 5842 6161 -5 298 222 51 43 chr1_random 2304087 2304204 -6851915 - L1MEc LINE L1 -5628 768 651 632 312 64 43 chr1_random 2304346 2304721 -6851398 - L1MEc LINE L1 -5977 419 37 269 250 58 32 chr1_random 2304932 2305109 -6851010 - MLT1H LTR MaLR 0 555 412 252 273 141 37 chr1_random 2305289 2305531 -6850588 - L1M4 LINE L1 -2137 4009 3743 2746 166 6 2 chr1_random 2305539 2306028 -6850091 - L1MB3 LINE L1 -2 6181 5691 1997 192 11 13 chr1_random 2306029 2306371 -6849748 + MER44D DNA MER2_type 1 398 -2089 2560 42 0 0 chr1_random 2306371 2306681 -6849438 + AluY SINE Alu 1 310 -1 1997 192 11 13 chr1_random 2306681 2306719 -6849400 + MER44D DNA MER2_type 398 435 -170 773 276 9 19 chr1_random 2306820 2306994 -6849125 + L1ME1 LINE L1 5955 6128 -38 2225 109 0 0 chr1_random 2306994 2307296 -6848823 - AluSc SINE Alu -7 302 1 773 276 9 19 chr1_random 2307296 2307331 -6848788 + L1ME1 LINE L1 6128 6162 -4 255 114 0 0 chr1_random 2307341 2307385 -6848734 + (CA)n Simple_repeat Simple_repeat 1 44 0 1487 288 77 29 chr1_random 2307518 2308678 -6847441 + L1ME3A LINE L1 4901 6117 -53 429 125 0 14 chr1_random 2309040 2309112 -6847007 + AluJ/FLAM SINE Alu 1 71 -241 840 205 12 0 chr1_random 2309112 2309283 -6846836 + AluJo/FRAM SINE Alu 133 305 -7 969 144 0 25 chr1_random 2309395 2309555 -6846564 + THE1-int LTR MaLR 1265 1420 -160 284 51 0 0 chr1_random 2309669 2309708 -6846411 - MLT2B3 LTR ERVL -514 40 2 1409 259 35 9 chr1_random 2309711 2310174 -6845945 + L1ME1 LINE L1 3800 4274 -1872 515 271 10 20 chr1_random 2310202 2310405 -6845714 + L1ME1 LINE L1 4973 5173 -973 545 162 167 131 chr1_random 2310405 2310443 -6845676 - MLT2D LTR ERVL 0 414 379 204 40 0 0 chr1_random 2310443 2310468 -6845651 + (TG)n Simple_repeat Simple_repeat 1 25 0 545 162 167 131 chr1_random 2310468 2310627 -6845492 - MLT2D LTR ERVL -35 379 210 2571 185 47 2 chr1_random 2310627 2311092 -6845027 + MLT2B1 LTR ERVL 1 486 -34 257 110 55 0 chr1_random 2311109 2311182 -6844937 + (TA)n Simple_repeat Simple_repeat 1 77 0 334 143 0 70 chr1_random 2311212 2311294 -6844825 + MLT2B1 LTR ERVL 370 520 0 806 246 14 5 chr1_random 2311299 2311506 -6844613 - MLT2D LTR ERVL -205 209 1 1647 255 102 21 chr1_random 2311547 2311917 -6844202 + L1ME1 LINE L1 5215 5554 -612 603 257 34 34 chr1_random 2311917 2312123 -6843996 - MER3 DNA MER1_type -2 207 2 1647 255 102 21 chr1_random 2312123 2312422 -6843697 + L1ME1 LINE L1 5554 5925 -241 2369 73 0 10 chr1_random 2313141 2313443 -6842676 + AluSg SINE Alu 2 300 -10 419 307 76 87 chr1_random 2313566 2314016 -6842103 + L1MC4a LINE L1 5454 5898 -1910 1158 119 11 6 chr1_random 2315863 2316061 -6840058 - AluSq SINE Alu 0 313 116 1544 180 30 76 chr1_random 2316068 2316304 -6839815 - MER4B-int LTR ERV1 -9 6749 6538 565 49 85 0 chr1_random 2316304 2316386 -6839733 - L1PA4 LINE L1 0 6155 6067 1544 180 30 76 chr1_random 2316386 2316555 -6839564 - MER4B-int LTR ERV1 -220 6538 6363 1502 231 78 8 chr1_random 2316658 2317018 -6839101 - MER4B-int LTR ERV1 -442 6316 5932 309 177 208 10 chr1_random 2317015 2317111 -6839008 - MER4B-int LTR ERV1 -1367 4964 4850 * 279 79 0 0 chr1_random 2317123 2317161 -6838958 + (CA)n Simple_repeat Simple_repeat 2 39 0 324 189 41 54 chr1_random 2317161 2317273 -6838846 - L1MC4 LINE L1 -1339 6983 1993 409 178 0 131 chr1_random 2317560 2317667 -6838452 - MER4B-int LTR ERV1 -4245 3875 3783 21 57 0 0 chr1_random 2318203 2318238 -6837881 + AT_rich Low_complexity Low_complexity 1 35 0 448 344 111 25 chr1_random 2319059 2319620 -6836499 + L2 LINE L2 2150 2758 -556 870 329 10 3 chr1_random 2319647 2319936 -6836183 + MLT2E LTR ERVL 137 427 -201 1325 288 41 78 chr1_random 2319951 2320708 -6835411 + L1MEc LINE L1 1441 2224 -4172 4840 125 19 16 chr1_random 2320708 2321484 -6834635 - MER4E LTR ERV1 0 779 1 1325 288 41 78 chr1_random 2321484 2321644 -6834475 + L1MEc LINE L1 2224 2318 -4078 2546 82 120 5 chr1_random 2321644 2322045 -6834074 + LTR7 LTR ERV1 1 447 -3 1325 288 41 78 chr1_random 2322045 2322168 -6833951 + L1MEc LINE L1 2318 2444 -3952 947 197 100 48 chr1_random 2322173 2322462 -6833657 - LTR52 LTR ERVL -3 418 115 1024 267 104 42 chr1_random 2322472 2322762 -6833357 + L1MEc LINE L1 3104 3374 -2841 1661 171 13 7 chr1_random 2322762 2323060 -6833059 + AluJb SINE Alu 1 300 -12 1024 267 104 42 chr1_random 2323060 2323487 -6832632 + L1MEc LINE L1 3374 3866 -2349 1854 122 13 101 chr1_random 2323490 2323875 -6832244 - MLT2B3 LTR ERVL -1 553 203 1336 139 10 0 chr1_random 2323876 2324085 -6832034 - AluSg/x SINE Alu -19 291 81 227 272 49 12 chr1_random 2324207 2324288 -6831831 - L1MEc LINE L1 -2468 3661 3578 509 374 60 11 chr1_random 2324301 2324747 -6831372 - L1MEc LINE L1 -3459 2670 2203 264 313 65 32 chr1_random 2325103 2325349 -6830770 - L1MEc LINE L1 -4640 1670 1417 32 43 0 0 chr1_random 2325610 2325656 -6830463 + AT_rich Low_complexity Low_complexity 1 46 0 228 267 47 12 chr1_random 2325656 2325742 -6830377 - L1MEc LINE L1 -5063 1056 968 2355 93 0 6 chr1_random 2325763 2326075 -6830044 - AluSg SINE Alu 0 310 1 24 32 0 0 chr1_random 2326081 2326112 -6830007 + AT_rich Low_complexity Low_complexity 1 31 0 298 273 55 97 chr1_random 2326157 2326560 -6829559 - L1MEc LINE L1 -5221 898 513 26 30 0 0 chr1_random 2326682 2326715 -6829404 + AT_rich Low_complexity Low_complexity 1 33 0 321 342 57 53 chr1_random 2326750 2327031 -6829088 - L1MEc LINE L1 -5778 341 60 1236 275 77 38 chr1_random 2327728 2328124 -6827995 - L1ME3A LINE L1 -34 6136 5710 1366 204 99 25 chr1_random 2328124 2328487 -6827632 + MLT1B LTR MaLR 1 390 0 1236 275 77 38 chr1_random 2328487 2328664 -6827455 - L1ME3A LINE L1 -460 5710 5541 205 302 16 16 chr1_random 2330747 2330810 -6825309 - L2 LINE L2 0 3272 3210 2019 207 100 10 chr1_random 2330960 2331458 -6824661 + MER90 LTR ERV1 70 612 -2 379 232 10 0 chr1_random 2331486 2331587 -6824532 - HsTC2 DNA Tc2 0 1900 3 618 193 186 21 chr1_random 2331876 2332021 -6824098 + MER58B DNA MER1_type 170 338 -3 591 237 14 22 chr1_random 2332154 2332293 -6823826 + MIR SINE MIR 113 250 -12 29 70 0 0 chr1_random 2332952 2333009 -6823110 + AT_rich Low_complexity Low_complexity 1 57 0 2075 120 0 0 chr1_random 2333215 2333506 -6822613 - AluSx SINE Alu -6 306 16 338 183 28 42 chr1_random 2335347 2335418 -6820701 + Alu SINE Alu 224 293 -8 668 192 58 100 chr1_random 2335419 2335456 -6820663 - MER4D-int LTR ERV1 -2591 4007 3970 2088 74 0 19 chr1_random 2335456 2335726 -6820393 - AluY SINE Alu -10 301 37 668 192 58 100 chr1_random 2335726 2335979 -6820140 - MER4D-int LTR ERV1 -2628 3970 3729 3294 178 50 7 chr1_random 2336073 2336471 -6819648 + MER39B LTR ERV1 3 437 -216 2146 210 7 12 chr1_random 2336471 2336899 -6819220 - MSTB LTR MaLR 0 426 1 3294 178 50 7 chr1_random 2336899 2337097 -6819022 + MER39B LTR ERV1 437 625 -28 2758 150 30 68 chr1_random 2337107 2337344 -6818775 - MER4D-int LTR ERV1 -2896 3702 3457 1818 141 44 41 chr1_random 2337344 2337707 -6818412 - THE1B LTR MaLR 0 364 1 2758 150 30 68 chr1_random 2337707 2338353 -6817766 - MER4D-int LTR ERV1 -3141 3457 1659 1040 181 59 53 chr1_random 2338891 2339194 -6816925 - MER4D-int LTR ERV1 -6456 1664 1360 252 98 73 0 chr1_random 2339204 2339245 -6816874 - MER4D-int LTR ERV1 -6709 49 6 558 209 9 0 chr1_random 2339249 2339354 -6816765 - MER4D LTR ERV1 0 903 798 416 267 130 25 chr1_random 2339451 2339612 -6816507 - HAL1 LINE L1 -1482 1025 848 225 256 23 12 chr1_random 2339631 2339717 -6816402 - HsTC2 DNA Tc2 -4 1894 1808 388 79 16 16 chr1_random 2341144 2341207 -6814912 - MADE1 DNA Mariner 0 80 18 3893 288 57 48 chr1_random 2341733 2343082 -6813037 + L1MB8 LINE L1 11 1382 -5577 2051 151 40 0 chr1_random 2343082 2343432 -6812687 - THE1B LTR MaLR 0 364 1 3893 288 57 48 chr1_random 2343432 2344253 -6811866 + L1MB8 LINE L1 1382 2195 -4764 2428 239 28 3 chr1_random 2344259 2344908 -6811211 + L1MB8 LINE L1 4380 5044 -1913 766 280 67 134 chr1_random 2344905 2345309 -6810810 + L1MB8 LINE L1 5741 6117 -840 * 28 29 0 0 chr1_random 2345309 2345344 -6810775 + AT_rich Low_complexity Low_complexity 1 35 0 2412 232 97 56 chr1_random 2345344 2345725 -6810394 + L1MB8 LINE L1 6101 6465 -524 2023 175 15 39 chr1_random 2345725 2346052 -6810067 - MSTD LTR MaLR 0 396 79 1691 100 0 0 chr1_random 2346052 2346281 -6809838 + AluSq SINE Alu 85 313 0 2023 175 15 39 chr1_random 2346281 2346359 -6809760 - MSTD LTR MaLR -317 79 1 2412 232 97 56 chr1_random 2346359 2346718 -6809401 + L1MB8 LINE L1 6465 6879 -110 1624 192 77 3 chr1_random 2346718 2347041 -6809078 + MER7A DNA MER2_type 2 346 0 2412 232 97 56 chr1_random 2347041 2347156 -6808963 + L1MB8 LINE L1 6879 6988 -1 26 50 0 0 chr1_random 2347382 2347422 -6808697 + AT_rich Low_complexity Low_complexity 1 40 0 2327 264 36 48 chr1_random 2347561 2348952 -6807167 - L1MCb LINE L1 -4600 2145 570 7859 133 21 12 chr1_random 2349065 2350353 -6805766 + HSMAR2 DNA Mariner 3 1302 0 779 255 96 22 chr1_random 2350355 2350626 -6805493 - MER2 DNA MER2_type 0 345 55 951 300 136 10 chr1_random 2350681 2351181 -6804938 - L1MCb LINE L1 -5482 563 1 2084 149 42 20 chr1_random 2354423 2354779 -6801340 + THE1B LTR MaLR 1 364 0 211 364 68 0 chr1_random 2355616 2355704 -6800415 - MIR SINE MIR -109 153 60 1632 257 8 5 chr1_random 2356968 2357349 -6798770 - MLT1F LTR MaLR 0 542 161 273 259 98 71 chr1_random 2358958 2359070 -6797049 + L2 LINE L2 3191 3305 -8 362 156 0 0 chr1_random 2359392 2359456 -6796663 - L1MA5 LINE L1 -6 6294 6231 21 0 0 0 chr1_random 2361363 2361384 -6794735 + AT_rich Low_complexity Low_complexity 1 21 0 2430 60 0 3 chr1_random 2363046 2363346 -6792773 + AluSc SINE Alu 1 299 -10 346 321 101 24 chr1_random 2363623 2363832 -6792287 + MIR SINE MIR 32 256 -6 2065 102 14 0 chr1_random 2363860 2364143 -6791976 + AluSc SINE Alu 17 303 -6 269 286 9 38 chr1_random 2364824 2364929 -6791190 - L1ME1 LINE L1 -4 6162 6061 245 211 0 0 chr1_random 2364940 2364997 -6791122 - L1MEc LINE L1 -5297 1099 1043 1347 264 116 24 chr1_random 2365424 2365889 -6790230 + MLT1E LTR MaLR 42 549 -44 1303 283 31 4 chr1_random 2365910 2366387 -6789732 + MLT1E-int LTR MaLR 2 606 -765 348 310 50 25 chr1_random 2366622 2366822 -6789297 + MLT1E-int LTR MaLR 694 898 -473 656 242 47 147 chr1_random 2366931 2367054 -6789065 + MLT1E-int LTR MaLR 961 1095 -276 2068 124 3 0 chr1_random 2367054 2367337 -6788782 - AluSq SINE Alu -29 284 1 656 242 47 147 chr1_random 2367337 2367643 -6788476 + MLT1E-int LTR MaLR 1095 1347 -24 866 260 158 104 chr1_random 2367706 2368244 -6787875 + MLT1E LTR MaLR 20 586 -7 966 83 0 0 chr1_random 2368332 2368465 -6787654 + AluY SINE Alu 175 307 -4 1547 199 84 19 chr1_random 2369090 2369461 -6786658 + MSTD LTR MaLR 2 396 0 23 0 0 0 chr1_random 2370104 2370127 -6785992 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1_random 2371108 2371129 -6784990 + AT_rich Low_complexity Low_complexity 1 21 0 252 289 70 39 chr1_random 2371628 2371672 -6784447 - MIR SINE MIR -11 251 210 182 37 37 0 chr1_random 2371672 2371699 -6784420 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1544 197 3 0 chr1_random 2371702 2371986 -6784133 - AluJb SINE Alu -25 287 3 252 289 70 39 chr1_random 2371986 2372093 -6784026 - MIR SINE MIR -53 209 91 29 0 0 0 chr1_random 2372279 2372308 -6783811 + AT_rich Low_complexity Low_complexity 1 29 0 416 321 71 5 chr1_random 2372823 2373007 -6783112 + MER102a DNA MER1_type 124 319 -11 1701 182 0 13 chr1_random 2373208 2373516 -6782603 - AluJb SINE Alu -8 304 1 2315 68 0 0 chr1_random 2373585 2373878 -6782241 - AluY SINE Alu -18 293 1 1483 100 14 0 chr1_random 2375852 2376072 -6780047 - L1PA6 LINE L1 0 6154 5932 821 286 0 5 chr1_random 2376091 2376315 -6779804 - MER58A DNA MER1_type 0 224 2 26 0 0 0 chr1_random 2376561 2376587 -6779532 + AT_rich Low_complexity Low_complexity 1 26 0 295 314 17 0 chr1_random 2376715 2376833 -6779286 + L1ME3 LINE L1 4754 4873 -1273 419 291 104 57 chr1_random 2377122 2377726 -6778393 + L1ME3A LINE L1 5542 6168 -2 346 349 79 28 chr1_random 2378048 2378300 -6777819 - L2 LINE L2 -493 2821 2557 261 316 7 43 chr1_random 2378303 2378442 -6777677 + MER104 DNA Tc2 41 174 -6 29 0 0 0 chr1_random 2378824 2378853 -6777266 + AT_rich Low_complexity Low_complexity 1 29 0 1853 135 50 58 chr1_random 2379255 2379633 -6776486 + THE1C LTR MaLR 1 375 0 1367 115 60 5 chr1_random 2379848 2380066 -6776053 - MER30 DNA MER1_type 0 230 1 185 355 113 28 chr1_random 2380459 2380600 -6775519 - MER5A DNA MER1_type -5 184 32 391 214 10 0 chr1_random 2380788 2380891 -6775228 - L1MEd LINE L1 -5989 130 27 2037 102 0 11 chr1_random 2381964 2382272 -6773847 + AluSc SINE Alu 1 305 0 2117 116 0 10 chr1_random 2382649 2382952 -6773167 + AluSq SINE Alu 1 300 -13 353 274 7 22 chr1_random 2383287 2383422 -6772697 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 186 311 62 68 chr1_random 2384692 2384869 -6771250 + MIR SINE MIR 30 205 -57 1329 137 31 13 chr1_random 2385419 2385646 -6770473 + AluJb SINE Alu 4 234 -78 21 57 0 0 chr1_random 2386160 2386195 -6769924 + AT_rich Low_complexity Low_complexity 1 35 0 444 312 149 39 chr1_random 2386343 2387177 -6768942 + L1MC/D LINE L1 4556 5482 -746 41 0 0 0 chr1_random 2388439 2388480 -6767639 + AT_rich Low_complexity Low_complexity 1 41 0 1574 271 59 45 chr1_random 2388622 2389602 -6766517 + L1ME3 LINE L1 4972 5976 -186 373 298 9 9 chr1_random 2389602 2389716 -6766403 - MER81 DNA DNA 0 114 1 1574 271 59 45 chr1_random 2389716 2389735 -6766384 + L1ME3 LINE L1 5976 5993 -169 1860 235 63 44 chr1_random 2389736 2390259 -6765860 - MLT1F LTR MaLR 0 542 10 581 181 76 35 chr1_random 2390260 2390404 -6765715 + L1ME3 LINE L1 6007 6156 -6 334 250 61 75 chr1_random 2390571 2390783 -6765336 + L1MC5 LINE L1 6968 7176 -785 1099 190 5 5 chr1_random 2390988 2391193 -6764926 + AluJb SINE Alu 86 290 -22 2347 92 0 9 chr1_random 2395225 2395540 -6760579 + AluSx SINE Alu 1 312 0 2355 89 7 0 chr1_random 2395772 2396075 -6760044 - AluSp SINE Alu -6 307 3 636 347 113 44 chr1_random 2396145 2396817 -6759302 + L2 LINE L2 2573 3271 -1 209 83 28 0 chr1_random 2397102 2397138 -6758981 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 56 0 0 chr1_random 2397407 2397443 -6758676 + AT_rich Low_complexity Low_complexity 1 36 0 1223 190 0 5 chr1_random 2398457 2398678 -6757441 + AluJb SINE Alu 81 300 -12 257 282 82 0 chr1_random 2399750 2399835 -6756284 - MIR SINE MIR -84 124 33 25 65 0 0 chr1_random 2399911 2399957 -6756162 + AT_rich Low_complexity Low_complexity 1 46 0 182 308 15 0 chr1_random 2400093 2400158 -6755961 - MIR SINE MIR -11 251 186 189 338 14 40 chr1_random 2400187 2400261 -6755858 - MIR SINE MIR -174 88 17 238 176 0 0 chr1_random 2400891 2400942 -6755177 + L1MC4 LINE L1 6653 6703 -1339 11062 139 84 71 chr1_random 2401051 2401396 -6754723 - Tigger1 DNA MER2_type 0 2418 2079 1403 39 6 0 chr1_random 2401396 2401574 -6754545 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1867 119 22 0 chr1_random 2401573 2401909 -6754210 - AluSx SINE Alu 0 342 1 11062 139 84 71 chr1_random 2401909 2403950 -6752169 - Tigger1 DNA MER2_type -674 1744 1 359 278 21 21 chr1_random 2403989 2404133 -6751986 - L1ME2 LINE L1 -306 5858 5715 614 311 102 29 chr1_random 2404381 2405217 -6750902 - L1ME2 LINE L1 -743 5403 4507 2007 260 49 5 chr1_random 2405480 2406076 -6750043 + MLT1E2 LTR MaLR 5 626 0 674 164 0 8 chr1_random 2406336 2406458 -6749661 + L1PB4 LINE L1 6034 6154 -2 266 374 49 16 chr1_random 2407035 2407158 -6748961 - L2 LINE L2 0 3272 3146 343 330 53 29 chr1_random 2407448 2407654 -6748465 - L2 LINE L2 -482 2832 2622 1281 148 65 0 chr1_random 2407933 2408149 -6747970 - MER30 DNA MER1_type 0 230 1 315 323 104 32 chr1_random 2408797 2409017 -6747102 - MIR SINE MIR -6 256 21 24 32 0 0 chr1_random 2409429 2409460 -6746659 + AT_rich Low_complexity Low_complexity 1 31 0 1530 298 87 2 chr1_random 2410551 2411085 -6745034 + MLT1G LTR MaLR 32 590 0 452 298 31 13 chr1_random 2411103 2411380 -6744739 + L1ME LINE L1 1332 1657 -5290 884 298 35 8 chr1_random 2411434 2411810 -6744309 + L1ME2 LINE L1 5773 6158 -6 22 0 0 0 chr1_random 2412769 2412791 -6743328 + AT_rich Low_complexity Low_complexity 1 22 0 1383 261 102 11 chr1_random 2412921 2413449 -6742670 - MER119 DNA MER1_type 0 583 8 735 209 82 5 chr1_random 2414310 2414506 -6741613 + L1MEc LINE L1 52 262 -6134 331 240 50 110 chr1_random 2414652 2414969 -6741150 - L1MCa LINE L1 -5762 707 34 355 266 106 0 chr1_random 2415587 2415681 -6740438 - L2 LINE L2 -18 3254 3151 21 36 0 0 chr1_random 2416057 2416085 -6740034 + AT_rich Low_complexity Low_complexity 1 28 0 202 231 0 77 chr1_random 2416467 2416558 -6739561 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 240 415 23 0 chr1_random 2416934 2417064 -6739055 + MIR3 SINE MIR 55 187 -21 209 309 100 36 chr1_random 2418749 2418859 -6737260 - MIR SINE MIR -21 241 125 241 204 161 54 chr1_random 2419781 2419874 -6736245 - Zaphod DNA AcHobo 0 4031 3929 836 118 0 0 chr1_random 2420809 2420936 -6735183 + HERVL-A2 LTR ERVL 5528 5654 0 1980 161 54 34 chr1_random 2420936 2421477 -6734642 + MLT2A2 LTR ERVL 1 554 0 2396 105 0 0 chr1_random 2422563 2422876 -6733243 + AluSq SINE Alu 1 313 0 361 251 89 45 chr1_random 2422903 2423082 -6733037 - MIR3 SINE MIR -13 195 9 2860 158 117 39 chr1_random 2423393 2424121 -6731998 + LTR1B LTR ERV1 1 826 0 199 344 119 6 chr1_random 2424689 2424849 -6731270 + L2 LINE L2 2698 2875 -439 2279 103 0 3 chr1_random 2424936 2425237 -6730882 - AluSc SINE Alu -9 300 1 2128 128 0 0 chr1_random 2426380 2426677 -6729442 + AluSx SINE Alu 1 297 -15 465 85 0 0 chr1_random 2426856 2426959 -6729160 + AluSc SINE Alu 224 326 0 268 259 12 59 chr1_random 2427403 2427488 -6728631 + MIR SINE MIR 58 138 -124 1809 187 187 20 chr1_random 2427518 2428100 -6728019 - MER39 LTR ERV1 0 707 1 267 256 78 0 chr1_random 2428635 2428725 -6727394 + L1ME LINE L1 5568 5664 -457 1194 221 11 22 chr1_random 2429448 2429715 -6726404 - MER67A LTR ERV1 -12 531 268 1579 200 16 17 chr1_random 2429767 2430097 -6726022 - MER67B LTR ERV1 -252 409 107 4088 131 18 0 chr1_random 2430097 2430698 -6725421 - LTR9 LTR ERV1 0 612 1 1579 200 16 17 chr1_random 2430698 2430805 -6725314 - MER67B LTR ERV1 -554 107 1 228 192 19 19 chr1_random 2431177 2431229 -6724890 - L2 LINE L2 -4 3268 3217 307 249 86 140 chr1_random 2431505 2431668 -6724451 + MIR SINE MIR 6 151 -111 1786 160 39 0 chr1_random 2431668 2431950 -6724169 - AluJb SINE Alu -19 293 1 307 249 86 140 chr1_random 2431950 2432043 -6724076 + MIR SINE MIR 151 248 -14 1273 169 25 12 chr1_random 2432259 2432561 -6723558 - MER2 DNA MER2_type 0 345 1 258 371 28 75 chr1_random 2434081 2434510 -6721609 + L2 LINE L2 2342 2750 -564 208 206 0 29 chr1_random 2434771 2434839 -6721280 + (CATA)n Simple_repeat Simple_repeat 3 68 0 32 0 0 0 chr1_random 2435014 2435046 -6721073 + AT_rich Low_complexity Low_complexity 1 32 0 5040 108 0 1 chr1_random 2435593 2436285 -6719834 + LTR8 LTR ERV1 1 691 0 1021 223 101 21 chr1_random 2436416 2436950 -6719169 + LTR48B LTR ERV1 8 640 -4 1716 181 3 19 chr1_random 2437471 2437781 -6718338 + AluSx SINE Alu 1 305 -7 1208 391 68 11 chr1_random 2437934 2438287 -6717832 + MER83C LTR ERV1 1 373 0 206 179 77 0 chr1_random 2639192 2639231 -6516888 + MIR SINE MIR 204 245 -17 668 330 84 28 chr1_random 2639401 2639759 -6516360 - L2 LINE L2 -4 3309 2932 652 204 0 0 chr1_random 2640437 2640550 -6515569 - FLAM_A SINE Alu -19 114 2 342 345 27 14 chr1_random 2640553 2640701 -6515418 - MIR SINE MIR -111 151 2 237 345 10 72 chr1_random 2641948 2642157 -6513962 + L2 LINE L2 2934 3129 -143 1902 73 12 8 chr1_random 2644761 2645045 -6511074 + AluSx SINE Alu 39 323 0 349 299 0 21 chr1_random 2645255 2645352 -6510767 - L2 LINE L2 -40 3273 3179 182 273 0 104 chr1_random 2645417 2645494 -6510625 - L2 LINE L2 -18 3254 3186 439 313 178 12 chr1_random 2645608 2645934 -6510185 - L2 LINE L2 -1236 2078 1699 905 227 58 8 chr1_random 2647373 2647615 -6508504 - L1MB5 LINE L1 -9 6165 5912 687 185 0 0 chr1_random 2647716 2647824 -6508295 - FLAM_C SINE Alu -30 113 6 198 103 0 0 chr1_random 2650109 2650138 -6505981 + (GGA)n Simple_repeat Simple_repeat 3 31 0 742 185 0 0 chr1_random 2651033 2651152 -6504967 + FLAM_C SINE Alu 1 119 -14 412 169 28 17 chr1_random 2651203 2651380 -6504739 + (TA)n Simple_repeat Simple_repeat 2 180 0 2316 115 0 10 chr1_random 2651483 2651797 -6504322 + AluY SINE Alu 1 311 0 308 292 64 29 chr1_random 2653395 2653566 -6502553 - MIR3 SINE MIR -12 196 20 184 341 179 8 chr1_random 2653988 2654111 -6502008 - L3b LINE CR1 -338 1245 1102 1344 198 20 92 chr1_random 2655536 2655936 -6500183 + MLT1A2 LTR MaLR 4 374 0 1466 96 5 0 chr1_random 2656254 2656451 -6499668 - AluSg/x SINE Alu -21 291 94 2491 54 3 22 chr1_random 2656454 2656767 -6499352 - AluY SINE Alu -4 307 1 247 235 183 26 chr1_random 2656979 2657094 -6499025 - MIR3 SINE MIR 0 208 76 368 281 125 22 chr1_random 2657129 2657449 -6498670 - LTR37A LTR ERV1 0 426 74 1197 100 5 5 chr1_random 2658124 2658323 -6497796 + AluY SINE Alu 11 309 -2 636 117 78 0 chr1_random 2659436 2659564 -6496555 - L1MB4 LINE L1 -20 6160 6023 1829 172 3 0 chr1_random 2659686 2659982 -6496137 + AluJb SINE Alu 1 297 -15 633 146 0 19 chr1_random 2660021 2660124 -6495995 - U6 snRNA snRNA 0 107 7 203 342 97 0 chr1_random 2660261 2660375 -6495744 - MIR SINE MIR -65 197 73 251 344 22 0 chr1_random 2661114 2661204 -6494915 + MIR SINE MIR 41 132 -76 2476 82 0 0 chr1_random 2661312 2661616 -6494503 + AluSg SINE Alu 1 304 -6 249 328 76 25 chr1_random 2662651 2662770 -6493349 + MIR3 SINE MIR 14 138 -70 502 151 308 14 chr1_random 2662817 2662963 -6493156 + MER5A DNA MER1_type 1 189 0 1009 177 13 0 chr1_random 2663098 2663283 -6492836 - AluJo SINE Alu 0 308 122 506 167 0 0 chr1_random 2663328 2663418 -6492701 - MST-int LTR MaLR -243 1408 1319 884 159 0 21 chr1_random 2663418 2663563 -6492556 - AluJo SINE Alu -170 142 1 2137 119 0 3 chr1_random 2665272 2665574 -6490545 - AluSg SINE Alu -9 301 1 753 192 66 30 chr1_random 2665638 2665836 -6490283 - MER3 DNA MER1_type 0 209 5 195 129 0 0 chr1_random 2666613 2666644 -6489475 + (CA)n Simple_repeat Simple_repeat 1 31 0 3345 155 115 118 chr1_random 2667776 2668223 -6487896 + L1MC3 LINE L1 6668 7115 -670 243 212 15 15 chr1_random 2668223 2668289 -6487830 + MLT1F1 LTR MaLR 36 101 -466 3345 155 115 118 chr1_random 2668289 2668896 -6487223 + L1MC3 LINE L1 7115 7784 -1 181 280 60 0 chr1_random 2668965 2669015 -6487104 + MIR SINE MIR 11 63 -199 21 0 0 0 chr1_random 2673153 2673174 -6482945 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr1_random 2673229 2673250 -6482869 + AT_rich Low_complexity Low_complexity 1 21 0 715 173 80 7 chr1_random 2674197 2674347 -6481772 + MER3 DNA MER1_type 41 201 -8 342 205 24 0 chr1_random 2674312 2674395 -6481724 - MER3 DNA MER1_type -119 90 6 * 25 83 0 0 chr1_random 2674565 2674625 -6481494 + AT_rich Low_complexity Low_complexity 1 60 0 1528 149 3 76 chr1_random 2674650 2674818 -6481301 - AluJo SINE Alu -32 280 142 2167 69 0 0 chr1_random 2674818 2675078 -6481041 - AluY SINE Alu -16 295 36 1528 149 3 76 chr1_random 2675078 2675211 -6480908 - AluJo SINE Alu -170 142 1 255 256 13 51 chr1_random 2675906 2675984 -6480135 + MIR SINE MIR 49 123 -85 1302 165 135 11 chr1_random 2676464 2676730 -6479389 - AluJb SINE Alu -3 299 1 881 192 26 21 chr1_random 2677312 2677505 -6478614 - Tigger2 DNA MER2_type -2175 543 350 7036 49 6 0 chr1_random 2677510 2678755 -6477364 - L1PA5 LINE L1 -13 6141 4887 248 294 22 52 chr1_random 2678883 2679019 -6477100 - L1ME2 LINE L1 -10 6154 6023 1941 151 0 0 chr1_random 2679231 2679516 -6476603 + AluJb SINE Alu 22 306 -6 4125 132 56 21 chr1_random 2679529 2679847 -6476272 + Tigger3b DNA MER2_type 3 308 -2720 1639 203 0 10 chr1_random 2679847 2680143 -6475976 + AluJo SINE Alu 1 293 -19 4125 132 56 21 chr1_random 2680143 2680642 -6475477 + Tigger3b DNA MER2_type 308 849 -382 383 97 0 16 chr1_random 2680642 2680704 -6475415 + Tigger3b DNA MER2_type 788 848 -383 370 111 0 16 chr1_random 2680705 2680768 -6475351 + Tigger3b DNA MER2_type 788 849 -382 289 131 33 16 chr1_random 2680768 2680829 -6475290 + Tigger3b DNA MER2_type 788 849 -382 391 95 0 16 chr1_random 2680829 2680892 -6475227 + Tigger3b DNA MER2_type 789 850 -382 387 95 0 16 chr1_random 2680892 2680955 -6475164 + Tigger3b DNA MER2_type 788 849 -382 413 79 0 16 chr1_random 2680955 2681018 -6475101 + Tigger3b DNA MER2_type 789 850 -382 347 127 0 16 chr1_random 2681018 2681081 -6475038 + Tigger3b DNA MER2_type 788 849 -382 378 111 0 16 chr1_random 2681081 2681144 -6474975 + Tigger3b DNA MER2_type 789 850 -382 390 95 0 16 chr1_random 2681144 2681207 -6474912 + Tigger3b DNA MER2_type 789 850 -382 289 131 33 16 chr1_random 2681207 2681268 -6474851 + Tigger3b DNA MER2_type 788 849 -382 391 95 0 16 chr1_random 2681268 2681331 -6474788 + Tigger3b DNA MER2_type 789 850 -382 391 95 0 16 chr1_random 2681331 2681394 -6474725 + Tigger3b DNA MER2_type 788 849 -382 384 95 0 16 chr1_random 2681394 2681457 -6474662 + Tigger3b DNA MER2_type 788 849 -382 279 148 33 16 chr1_random 2681457 2681518 -6474601 + Tigger3b DNA MER2_type 788 849 -382 325 86 86 17 chr1_random 2681518 2681576 -6474543 + Tigger3b DNA MER2_type 788 849 -382 408 79 0 16 chr1_random 2681576 2681639 -6474480 + Tigger3b DNA MER2_type 789 850 -382 289 131 33 16 chr1_random 2681639 2681700 -6474419 + Tigger3b DNA MER2_type 788 849 -382 347 127 0 16 chr1_random 2681700 2681763 -6474356 + Tigger3b DNA MER2_type 788 849 -382 231 130 43 0 chr1_random 2681763 2681809 -6474310 + Tigger3b DNA MER2_type 789 836 -396 277 210 48 57 chr1_random 2681921 2682045 -6474074 + L1ME4a LINE L1 5946 6068 -53 22 0 0 0 chr1_random 2682063 2682085 -6474034 + AT_rich Low_complexity Low_complexity 1 22 0 2020 112 54 0 chr1_random 2682718 2683013 -6473106 + AluSq SINE Alu 1 311 -2 198 308 110 22 chr1_random 2683122 2683213 -6472906 - L2 LINE L2 -4 3268 3170 1642 180 46 19 chr1_random 2683258 2683631 -6472488 - MLT1B LTR MaLR -7 383 1 422 276 128 26 chr1_random 2683804 2684069 -6472050 - MER102b DNA MER1_type -1 340 49 405 307 114 0 chr1_random 2684246 2684360 -6471759 + L2 LINE L2 3142 3268 -4 2188 103 3 0 chr1_random 2685412 2685704 -6470415 + AluSg SINE Alu 1 293 -17 318 253 138 0 chr1_random 2685727 2685814 -6470305 + MIR SINE MIR 59 157 -105 21 36 0 0 chr1_random 2686699 2686727 -6469392 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1_random 2688899 2688928 -6467191 + AT_rich Low_complexity Low_complexity 1 29 0 2202 109 3 0 chr1_random 2691609 2691903 -6464216 + AluSg SINE Alu 1 295 -15 601 323 39 47 chr1_random 2692505 2692889 -6463230 + L1MEd LINE L1 288 668 -5451 1095 203 38 0 chr1_random 2692919 2693131 -6462988 + AluJb SINE Alu 84 303 -9 305 231 84 67 chr1_random 2693134 2693372 -6462747 + L1MEd LINE L1 704 945 -5174 648 306 135 0 chr1_random 2693452 2693756 -6462363 + L1ME3A LINE L1 5565 5909 -261 2500 41 7 0 chr1_random 2693943 2694236 -6461883 + AluY SINE Alu 1 295 -16 1705 202 79 111 chr1_random 2694682 2695451 -6460668 + LTR1B LTR ERV1 1 745 -81 378 304 17 9 chr1_random 2695532 2695647 -6460472 + LTR28 LTR ERV1 905 1020 0 4462 218 94 86 chr1_random 2695801 2697542 -6458577 + MER52A LTR ERV1 1 1755 0 429 315 41 20 chr1_random 2697973 2698198 -6457921 + MIR SINE MIR 23 251 -11 305 282 61 30 chr1_random 2698902 2699033 -6457086 - L2 LINE L2 -794 2520 2386 1893 293 92 67 chr1_random 2699701 2701159 -6454960 - L2 LINE L2 -70 3243 1753 206 327 0 0 chr1_random 2702476 2702531 -6453588 - MIR3 SINE MIR -16 192 138 2280 116 0 0 chr1_random 2702935 2703246 -6452873 + AluY SINE Alu 1 311 0 253 299 95 20 chr1_random 2703310 2703417 -6452702 + MIR SINE MIR 43 156 -64 183 42 0 0 chr1_random 2704769 2704793 -6451326 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2533 28 0 0 chr1_random 2704795 2705077 -6451042 - AluY SINE Alu -29 282 1 23 33 0 0 chr1_random 2705077 2705107 -6451012 + AT_rich Low_complexity Low_complexity 1 30 0 311 292 119 36 chr1_random 2706565 2706784 -6449335 + MIR SINE MIR 26 262 0 1494 192 63 3 chr1_random 2706960 2707247 -6448872 - AluJo SINE Alu -8 304 1 186 273 41 99 chr1_random 2707487 2707608 -6448511 - MIR SINE MIR -147 115 2 184 327 0 0 chr1_random 2707918 2707970 -6448149 - MIR SINE MIR -10 252 201 2806 189 59 13 chr1_random 2708454 2709126 -6446993 - Tigger7 DNA MER2_type 0 2587 1 354 23 0 0 chr1_random 2709479 2709522 -6446597 + (CA)n Simple_repeat Simple_repeat 2 44 0 1503 187 40 4 chr1_random 2709748 2710021 -6446098 + AluJb SINE Alu 1 283 -29 198 0 0 0 chr1_random 2710021 2710043 -6446076 + (CAAT)n Simple_repeat Simple_repeat 2 23 0 840 195 19 0 chr1_random 2711366 2711520 -6444599 - FAM SINE Alu -6 43 1 306 328 43 0 chr1_random 2711559 2711675 -6444444 + MIR SINE MIR 84 204 -58 583 303 45 41 chr1_random 2711937 2712181 -6443938 + MIR SINE MIR 18 262 0 259 314 119 17 chr1_random 2712211 2712329 -6443790 - MIR SINE MIR -125 137 8 234 322 58 0 chr1_random 2712404 2712491 -6443628 - L2 LINE L2 -51 3262 3171 6092 125 149 25 chr1_random 2713815 2714952 -6441167 + MER52C LTR ERV1 1 1278 0 186 244 49 0 chr1_random 2715027 2715068 -6441051 - L2 LINE L2 -30 3242 3200 333 287 20 0 chr1_random 2715370 2715471 -6440648 - L2 LINE L2 -1501 1813 1711 418 321 58 16 chr1_random 2715524 2715714 -6440405 - MIR3 SINE MIR -9 199 2 2335 101 0 0 chr1_random 2717318 2717615 -6438504 + AluSg SINE Alu 1 297 -13 400 296 121 63 chr1_random 2717742 2717965 -6438154 + MIR SINE MIR 20 255 -7 396 157 191 95 chr1_random 2719145 2719292 -6436827 + MIR SINE MIR 102 262 0 342 67 0 0 chr1_random 2719758 2719803 -6436316 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 21 0 0 0 chr1_random 2719803 2719824 -6436295 + AT_rich Low_complexity Low_complexity 1 21 0 1489 139 53 64 chr1_random 2719842 2720123 -6435996 - AluJo SINE Alu -34 278 1 2392 97 0 0 chr1_random 2721123 2721433 -6434686 - AluY SINE Alu -1 310 1 1962 126 7 33 chr1_random 2722051 2722353 -6433766 + AluSx SINE Alu 2 295 -17 585 281 82 79 chr1_random 2722893 2723210 -6432909 - L2 LINE L2 -5 3267 2950 230 354 73 6 chr1_random 2723207 2723371 -6432748 - L2 LINE L2 -786 2528 2354 * 237 262 252 0 chr1_random 2723612 2723719 -6432400 - MIR SINE MIR -114 148 15 22 35 0 0 chr1_random 2724383 2724412 -6431707 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr1_random 2725343 2725366 -6430753 + (A)n Simple_repeat Simple_repeat 1 23 0 1976 125 24 0 chr1_random 2725588 2725877 -6430242 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr1_random 2726128 2726150 -6429969 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr1_random 2726438 2726476 -6429643 + AT_rich Low_complexity Low_complexity 1 38 0 1789 154 19 26 chr1_random 2727419 2727690 -6428429 - Tigger3(Golem) DNA MER2_type -1 3027 2757 1577 226 0 0 chr1_random 2727690 2727987 -6428132 + AluJo SINE Alu 1 297 -15 1789 154 19 26 chr1_random 2727987 2728026 -6428093 - Tigger3(Golem) DNA MER2_type -271 2757 2719 1708 71 5 0 chr1_random 2728142 2728366 -6427753 + L1P LINE L1 2497 2721 -3425 456 279 59 78 chr1_random 2728361 2728834 -6427285 - HAL1 LINE L1 -932 1575 1112 * 281 245 0 0 chr1_random 2729106 2729155 -6426964 + AluY SINE Alu 133 181 -120 330 167 0 0 chr1_random 2729155 2729215 -6426904 + (TA)n Simple_repeat Simple_repeat 2 61 0 297 0 0 0 chr1_random 2730300 2730333 -6425786 + (T)n Simple_repeat Simple_repeat 1 33 0 1574 165 0 15 chr1_random 2730393 2730665 -6425454 + AluSx SINE Alu 42 309 -3 212 172 31 47 chr1_random 2730754 2730818 -6425301 + A-rich Low_complexity Low_complexity 1 63 0 309 249 149 0 chr1_random 2731859 2732006 -6424113 - MIR SINE MIR -58 204 36 207 83 42 21 chr1_random 2732017 2732065 -6424054 + (TA)n Simple_repeat Simple_repeat 1 49 0 33 0 0 0 chr1_random 2732523 2732556 -6423563 + AT_rich Low_complexity Low_complexity 1 33 0 216 0 0 0 chr1_random 2732640 2732664 -6423455 + (TC)n Simple_repeat Simple_repeat 2 25 0 206 173 0 58 chr1_random 2732664 2732716 -6423403 + (TA)n Simple_repeat Simple_repeat 1 49 0 2437 60 0 47 chr1_random 2733825 2734144 -6421975 - AluY SINE Alu -7 304 1 2107 118 30 3 chr1_random 2734295 2734592 -6421527 - AluSx SINE Alu -7 305 1 989 95 0 0 chr1_random 2736153 2736290 -6419829 - L1MA1 LINE L1 -3 6299 6163 396 240 29 19 chr1_random 2737161 2737265 -6418854 - MIR SINE MIR -90 172 68 2850 134 13 2 chr1_random 2737904 2738359 -6417760 - L1PA16 LINE L1 -8 6861 6402 722 251 18 0 chr1_random 2738359 2738578 -6417541 - L1 LINE L1 -1609 4537 4315 1157 151 37 37 chr1_random 2738584 2738829 -6417290 - L1PA16 LINE L1 -461 6408 6164 10265 220 51 27 chr1_random 2738839 2740668 -6415451 - L1PA16 LINE L1 -895 5954 4013 2985 67 67 9 chr1_random 2740668 2740707 -6415412 - MLT2A1 LTR ERVL 0 444 409 582 109 0 0 chr1_random 2740707 2740808 -6415311 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 2985 67 67 9 chr1_random 2740808 2741188 -6414931 - MLT2A1 LTR ERVL -35 409 1 10265 220 51 27 chr1_random 2741188 2742545 -6413574 - L1PA16 LINE L1 -2836 4013 2689 520 73 37 24 chr1_random 2742545 2742627 -6413492 + MSTB LTR MaLR 1 83 -345 872 197 81 36 chr1_random 2742631 2742812 -6413307 + MSTB LTR MaLR 194 388 -38 2397 91 0 0 chr1_random 2742812 2743108 -6413011 - AluSg SINE Alu -14 296 1 872 197 81 36 chr1_random 2743108 2743149 -6412970 + MSTB LTR MaLR 388 426 0 10862 148 29 23 chr1_random 2743149 2745098 -6411021 - L1PA16 LINE L1 -4156 2693 734 1021 164 5 61 chr1_random 2745099 2745197 -6410922 - L1PA16 LINE L1 -6647 202 120 2056 91 67 3 chr1_random 2745197 2745505 -6410614 - AluSc SINE Alu 0 326 1 1021 164 5 61 chr1_random 2745505 2745618 -6410501 - L1PA16 LINE L1 -6729 120 2 261 0 0 0 chr1_random 2745817 2745846 -6410273 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2231 78 3 0 chr1_random 2745848 2746131 -6409988 - AluY SINE Alu -27 284 1 532 262 28 14 chr1_random 2747145 2747290 -6408829 - MIR SINE MIR -4 258 112 189 237 17 51 chr1_random 2747342 2747401 -6408718 - L2 LINE L2 -5 3267 3211 230 350 0 0 chr1_random 2747441 2747501 -6408618 + L2 LINE L2 3205 3264 -8 603 288 21 50 chr1_random 2747941 2748181 -6407938 + MIR SINE MIR 30 262 0 695 198 0 0 chr1_random 2749147 2749263 -6406856 + FLAM_C SINE Alu 2 117 -16 213 264 198 8 chr1_random 2749606 2749727 -6406392 - MIR SINE MIR 0 262 119 1519 185 14 24 chr1_random 2749919 2750206 -6405913 - AluJo SINE Alu -17 295 12 271 250 125 14 chr1_random 2751243 2751315 -6404804 + L2 LINE L2 3187 3266 -6 961 108 0 36 chr1_random 2751414 2751553 -6404566 + AluSg/x SINE Alu 123 256 -56 320 152 15 0 chr1_random 2751553 2751619 -6404500 + GA-rich Low_complexity Low_complexity 1 67 0 210 128 0 43 chr1_random 2752161 2752208 -6403911 + (TTTTA)n Simple_repeat Simple_repeat 4 48 0 3734 71 6 24 chr1_random 2752832 2753200 -6402919 + MER41A LTR ERV1 1 357 -197 1933 120 6 29 chr1_random 2753200 2753516 -6402603 + AluSc SINE Alu 1 309 0 3734 71 6 24 chr1_random 2753516 2753685 -6402434 + MER41A LTR ERV1 357 528 -26 1640 194 6 19 chr1_random 2754301 2754654 -6401465 - AluJb SINE Alu 0 350 2 8013 198 36 22 chr1_random 2755081 2757925 -6398194 - L1MB3 LINE L1 -2 6181 3377 2304 107 0 19 chr1_random 2757925 2758243 -6397876 - AluSx SINE Alu 0 312 1 8013 198 36 22 chr1_random 2758243 2758369 -6397750 - L1MB3 LINE L1 -2806 3377 3254 2217 99 26 0 chr1_random 2758369 2758672 -6397447 - AluSq SINE Alu -2 311 1 8013 198 36 22 chr1_random 2758672 2758785 -6397334 - L1MB3 LINE L1 -2929 3254 3073 329 218 194 16 chr1_random 2759948 2760072 -6396047 - MER58B DNA MER1_type 0 341 196 337 304 20 10 chr1_random 2760107 2760209 -6395910 + MIR SINE MIR 15 117 -145 266 320 13 0 chr1_random 2760209 2760287 -6395832 + MIR SINE MIR 36 114 -148 281 298 12 12 chr1_random 2760289 2760373 -6395746 + MIR SINE MIR 34 117 -145 200 351 26 0 chr1_random 2760373 2760450 -6395669 + MIR SINE MIR 36 114 -148 308 274 12 12 chr1_random 2760452 2760536 -6395583 + MIR SINE MIR 34 117 -145 242 316 13 13 chr1_random 2760536 2760615 -6395504 + MIR SINE MIR 36 114 -148 282 298 12 12 chr1_random 2760617 2760701 -6395418 + MIR SINE MIR 34 117 -145 223 355 13 0 chr1_random 2760701 2760777 -6395342 + MIR SINE MIR 36 112 -150 240 346 13 0 chr1_random 2760781 2760859 -6395260 + MIR SINE MIR 34 112 -150 254 346 13 0 chr1_random 2760863 2760941 -6395178 + MIR SINE MIR 34 112 -150 272 309 12 12 chr1_random 2760945 2761029 -6395090 + MIR SINE MIR 34 117 -145 242 301 12 24 chr1_random 2761029 2761112 -6395007 + MIR SINE MIR 36 117 -145 249 304 13 13 chr1_random 2761193 2761272 -6394847 + MIR SINE MIR 34 112 -150 282 298 12 12 chr1_random 2761276 2761360 -6394759 + MIR SINE MIR 34 117 -145 256 333 13 0 chr1_random 2761441 2761519 -6394600 + MIR SINE MIR 34 112 -150 270 282 12 24 chr1_random 2761523 2761608 -6394511 + MIR SINE MIR 34 117 -145 212 325 12 24 chr1_random 2761608 2761691 -6394428 + MIR SINE MIR 36 117 -145 * 640 291 35 20 chr1_random 2761689 2761888 -6394231 + MIR SINE MIR 34 235 -27 2185 204 69 45 chr1_random 2762010 2762253 -6393866 + L1ME1 LINE L1 5346 5582 -584 180 0 0 0 chr1_random 2762253 2762273 -6393846 + (CCA)n Simple_repeat Simple_repeat 1 20 0 2185 204 69 45 chr1_random 2762273 2762731 -6393388 + L1ME1 LINE L1 5582 6063 -103 1685 248 56 44 chr1_random 2763056 2763628 -6392491 + MLT1E LTR MaLR 7 585 -8 2437 81 3 0 chr1_random 2764033 2764340 -6391779 + AluSx SINE Alu 1 308 -4 225 258 121 0 chr1_random 2764589 2764655 -6391464 + MIR3 SINE MIR 129 202 -6 527 151 0 12 chr1_random 2765302 2765388 -6390731 + FLAM_A SINE Alu 32 116 -26 320 325 0 34 chr1_random 2766122 2766239 -6389880 - MIR SINE MIR -1 261 149 220 244 67 76 chr1_random 2766324 2766443 -6389676 + L2 LINE L2 3182 3299 -14 192 299 15 15 chr1_random 2766482 2766549 -6389570 - L2 LINE L2 -22 3250 3184 1555 141 0 116 chr1_random 2766980 2767307 -6388812 + AluJo SINE Alu 1 289 -13 31 0 0 0 chr1_random 2767307 2767338 -6388781 + AT_rich Low_complexity Low_complexity 1 31 0 236 346 106 10 chr1_random 2767936 2768040 -6388079 + MIR SINE MIR 6 119 -143 2434 88 0 0 chr1_random 2769201 2769509 -6386610 - AluSg SINE Alu -2 308 1 550 249 57 18 chr1_random 2769530 2769759 -6386360 - L1M4 LINE L1 -2225 3921 3684 3384 92 2 0 chr1_random 2769763 2770230 -6385889 - L1PB1 LINE L1 0 6151 5684 2753 130 25 4 chr1_random 2770230 2770972 -6385147 + L1PB1 LINE L1 4934 5687 -464 448 99 0 14 chr1_random 2771054 2771125 -6384994 - L1PA10 LINE L1 0 6168 6099 311 247 118 0 chr1_random 2771426 2771511 -6384608 + L2 LINE L2 3173 3267 -5 2025 136 10 3 chr1_random 2771664 2771965 -6384154 - AluSx SINE Alu -9 303 1 433 231 51 17 chr1_random 2772280 2772397 -6383722 + MIR SINE MIR 34 154 -108 330 256 58 58 chr1_random 2772723 2772853 -6383266 - MER5B DNA MER1_type -18 160 28 1866 117 4 0 chr1_random 2772853 2773100 -6383019 - AluSx SINE Alu -7 305 58 330 256 58 58 chr1_random 2773100 2773125 -6382994 - MER5B DNA MER1_type -149 29 5 2288 95 0 7 chr1_random 2773615 2773909 -6382210 + AluSq SINE Alu 1 292 -21 1268 218 96 21 chr1_random 2773937 2774364 -6381755 + LTR37B LTR ERV1 10 468 0 191 209 23 0 chr1_random 2774453 2774496 -6381623 + MIR SINE MIR 209 252 -10 22 0 0 0 chr1_random 2776301 2776323 -6379796 + AT_rich Low_complexity Low_complexity 1 22 0 637 301 74 43 chr1_random 2778587 2778979 -6377140 + L2 LINE L2 1822 2225 -1089 239 143 102 0 chr1_random 2779213 2779262 -6376857 - L2 LINE L2 -1 3271 3218 355 225 39 108 chr1_random 2779358 2779389 -6376730 + MIR SINE MIR 82 114 -148 2225 116 0 0 chr1_random 2779389 2779682 -6376437 - AluSx SINE Alu -19 293 1 355 225 39 108 chr1_random 2779682 2779779 -6376340 + MIR SINE MIR 114 201 -61 36 82 0 0 chr1_random 2781284 2781369 -6374750 + AT_rich Low_complexity Low_complexity 1 85 0 237 348 169 4 chr1_random 2781846 2782234 -6373885 - L2 LINE L2 -1020 2294 1830 24 0 0 0 chr1_random 2783009 2783033 -6373086 + AT_rich Low_complexity Low_complexity 1 24 0 368 291 140 37 chr1_random 2783656 2784007 -6372112 + L1ME LINE L1 5403 5789 -332 * 5141 119 14 0 chr1_random 2783999 2784789 -6371330 + L1PA13 LINE L1 5363 6163 0 311 279 88 27 chr1_random 2784865 2785012 -6371107 + HAL1b LINE L1 1187 1342 -6 827 250 73 26 chr1_random 2785350 2785582 -6370537 + MIR SINE MIR 19 261 -1 191 310 70 0 chr1_random 2786053 2786153 -6369966 - L2 LINE L2 -91 3222 3116 377 284 69 0 chr1_random 2786453 2786569 -6369550 + L2 LINE L2 3149 3272 0 974 320 69 33 chr1_random 2786691 2787181 -6368938 + MLT1K LTR MaLR 59 566 -22 433 292 45 19 chr1_random 2787377 2787531 -6368588 - Charlie8 DNA MER1_type -2143 274 117 455 264 142 0 chr1_random 2787860 2788008 -6368111 + MIR SINE MIR 31 199 -63 394 137 15 43 chr1_random 2788012 2788106 -6368013 + MLT1E1 LTR MaLR 1 614 -40 890 221 187 14 chr1_random 2788112 2788406 -6367713 + MER2 DNA MER2_type 1 345 0 302 211 0 0 chr1_random 2788447 2788504 -6367615 + MIR SINE MIR 203 259 -3 1702 114 38 30 chr1_random 2790852 2791114 -6365005 + AluSx SINE Alu 28 291 -21 2729 23 0 0 chr1_random 2792169 2792475 -6363644 - AluY SINE Alu -5 306 1 25 51 0 0 chr1_random 2793209 2793248 -6362871 + AT_rich Low_complexity Low_complexity 1 39 0 2395 88 0 0 chr1_random 2795440 2795745 -6360374 - AluSg SINE Alu -5 305 1 269 194 0 15 chr1_random 2796389 2796456 -6359663 + (CA)n Simple_repeat Simple_repeat 2 67 0 1857 143 31 0 chr1_random 2797682 2797975 -6358144 - AluJb SINE Alu -8 304 3 203 295 111 121 chr1_random 2799770 2799960 -6356159 + MIR3 SINE MIR 16 203 -5 208 371 124 6 chr1_random 2800248 2800426 -6355693 - L3 LINE CR1 -6 1571 1373 710 193 0 0 chr1_random 2801017 2801126 -6354993 + FLAM_A SINE Alu 6 114 -28 1933 113 6 66 chr1_random 2801133 2801452 -6354667 - AluSq SINE Alu -13 300 1 2184 96 0 3 chr1_random 2801572 2801863 -6354256 + AluSc SINE Alu 19 308 -1 1082 197 113 81 chr1_random 2802236 2802483 -6353636 + Cheshire DNA MER1_type 1 263 -2157 735 117 33 0 chr1_random 2802483 2802603 -6353516 + L1MA8 LINE L1 6163 6286 -5 1082 197 113 81 chr1_random 2802603 2802690 -6353429 + Cheshire DNA MER1_type 263 346 -2074 265 197 33 0 chr1_random 2802687 2802748 -6353371 + Cheshire DNA MER1_type 2343 2405 -15 * 28 64 0 26 chr1_random 2802898 2802941 -6353178 + AT_rich Low_complexity Low_complexity 1 43 -33 1641 169 47 11 chr1_random 2802941 2803219 -6352900 + AluJo SINE Alu 1 288 -24 28 64 0 26 chr1_random 2803219 2803253 -6352866 + AT_rich Low_complexity Low_complexity 43 76 0 184 299 104 0 chr1_random 2803354 2803421 -6352698 - L2 LINE L2 -60 3253 3180 21 0 0 0 chr1_random 2805529 2805550 -6350569 + AT_rich Low_complexity Low_complexity 1 21 0 347 281 148 0 chr1_random 2806166 2806294 -6349825 - MIR SINE MIR -27 235 89 524 190 112 0 chr1_random 2806357 2806473 -6349646 - FRAM SINE Alu -16 160 32 1893 142 3 27 chr1_random 2806600 2806896 -6349223 - AluJo SINE Alu -23 289 1 1874 147 3 10 chr1_random 2806924 2807224 -6348895 + AluSx SINE Alu 2 299 -13 189 388 108 14 chr1_random 2807720 2807934 -6348185 + L2 LINE L2 313 546 -2768 249 269 9 37 chr1_random 2808786 2808894 -6347225 + L1MC5 LINE L1 7827 7931 -30 2308 92 0 3 chr1_random 2808972 2809278 -6346841 + AluSq SINE Alu 1 305 -8 269 112 0 124 chr1_random 2809552 2809713 -6346406 + (GGGA)n Simple_repeat Simple_repeat 1 141 0 252 185 0 85 chr1_random 2809729 2810115 -6346004 + GA-rich Low_complexity Low_complexity 1 353 0 1811 118 71 37 chr1_random 2811316 2811613 -6344506 + AluSx SINE Alu 1 307 -5 2170 110 3 0 chr1_random 2812736 2813037 -6343082 + AluSx SINE Alu 1 302 -10 7478 32 0 1 chr1_random 2813472 2814564 -6341555 - L1PA3 LINE L1 0 6155 5106 1859 167 0 3 chr1_random 2815680 2815973 -6340146 + AluJo SINE Alu 5 296 -16 6728 137 42 48 chr1_random 2816483 2817348 -6338771 + Tigger1 DNA MER2_type 1 858 -1560 2057 118 0 7 chr1_random 2817348 2817636 -6338483 + AluSx SINE Alu 1 286 -26 6728 137 42 48 chr1_random 2817636 2817995 -6338124 + Tigger1 DNA MER2_type 858 1218 -1200 596 174 7 62 chr1_random 2817983 2818127 -6337992 + Tigger1 DNA MER2_type 1600 1735 -683 * 5475 140 19 28 chr1_random 2818127 2818421 -6337698 + L1PA16 LINE L1 5040 5335 -831 1795 143 0 49 chr1_random 2818421 2818729 -6337390 + AluJb SINE Alu 8 300 -12 5475 140 19 28 chr1_random 2818729 2819546 -6336573 + L1PA16 LINE L1 5335 6151 -15 877 125 7 14 chr1_random 2819583 2819727 -6336392 + Tigger1 DNA MER2_type 1729 1871 -547 * 2404 154 52 2 chr1_random 2819703 2820125 -6335994 + Tigger1 DNA MER2_type 1974 2416 -2 553 181 35 9 chr1_random 2820837 2820953 -6335166 - MER94 DNA DNA -12 122 4 210 287 90 41 chr1_random 2821439 2821561 -6334558 - MIR SINE MIR -8 254 127 411 225 49 14 chr1_random 2822024 2822166 -6333953 - MER103 DNA DNA -6 160 14 2428 241 83 12 chr1_random 2823620 2824346 -6331773 + MER20B DNA MER1_type 1 777 -6 1433 202 114 17 chr1_random 2824486 2824847 -6331272 + MSTD LTR MaLR 1 396 0 257 362 20 13 chr1_random 2825404 2825556 -6330563 + L1MC/D LINE L1 5502 5654 -2154 810 195 12 112 chr1_random 2825592 2825833 -6330286 + AluJb SINE Alu 85 301 -11 477 241 117 0 chr1_random 2827844 2827981 -6328138 + MER58B DNA MER1_type 189 341 0 344 333 37 0 chr1_random 2828548 2828656 -6327463 + L2 LINE L2 2589 2700 -614 21 36 0 0 chr1_random 2828759 2828787 -6327332 + AT_rich Low_complexity Low_complexity 1 28 0 300 41 306 0 chr1_random 2828787 2828836 -6327283 + MADE1 DNA Mariner 1 64 -16 832 153 30 0 chr1_random 2828876 2829007 -6327112 - AluJo SINE Alu -177 135 1 2361 237 127 9 chr1_random 2829007 2829767 -6326352 - L1ME2 LINE L1 -60 6104 5255 228 228 0 0 chr1_random 2829782 2829839 -6326280 + GA-rich Low_complexity Low_complexity 1 57 0 876 222 141 25 chr1_random 2829843 2830204 -6325915 - L1ME2 LINE L1 -916 5230 4828 982 205 53 53 chr1_random 2830214 2830230 -6325889 + MER74B LTR ERVL 70 85 -537 1305 170 30 4 chr1_random 2830230 2830460 -6325659 - MER46A DNA MER2_type 0 236 1 982 205 53 53 chr1_random 2830460 2830746 -6325373 + MER74B LTR ERVL 84 372 -250 3899 148 44 35 chr1_random 2830746 2830826 -6325293 + L1MCa LINE L1 644 722 -5704 2379 78 3 0 chr1_random 2830826 2831133 -6324986 + AluY SINE Alu 1 308 -3 3899 148 44 35 chr1_random 2831133 2831245 -6324874 + L1MCa LINE L1 722 831 -5595 2193 136 30 14 chr1_random 2831245 2831614 -6324505 - THE1C LTR MaLR 0 375 1 3899 148 44 35 chr1_random 2831614 2832259 -6323860 + L1MCa LINE L1 831 1490 -4936 682 240 78 6 chr1_random 2832367 2832636 -6323483 + MSTC LTR MaLR 1 310 -55 3538 135 14 54 chr1_random 2832636 2832957 -6323162 + L1PA16 LINE L1 5525 5807 -359 2184 119 0 0 chr1_random 2832957 2833250 -6322869 + AluSx SINE Alu 1 293 -19 3538 135 14 54 chr1_random 2833250 2833593 -6322526 + L1PA16 LINE L1 5807 6162 -4 379 151 14 0 chr1_random 2833615 2833688 -6322431 + MSTC LTR MaLR 384 457 0 3458 174 65 21 chr1_random 2833688 2834146 -6321973 + L1MCa LINE L1 1683 2119 -4488 1699 169 0 10 chr1_random 2834146 2834436 -6321683 + AluJb SINE Alu 1 287 -25 3458 174 65 21 chr1_random 2834436 2834950 -6321169 + L1MCa LINE L1 2119 2662 -3945 204 306 0 0 chr1_random 2834953 2835002 -6321117 + L2 LINE L2 3011 3059 -254 522 346 167 25 chr1_random 2835167 2835653 -6320466 - L2 LINE L2 -615 2699 2145 1934 146 3 10 chr1_random 2836679 2836988 -6319131 + AluSx SINE Alu 3 309 -3 1442 203 13 29 chr1_random 2838070 2838385 -6317734 + AluJo SINE Alu 1 310 -2 592 319 102 18 chr1_random 2838449 2838675 -6317444 + MIR SINE MIR 18 262 0 264 330 31 10 chr1_random 2838680 2838777 -6317342 - MIR SINE MIR -70 138 40 459 331 194 10 chr1_random 2839154 2839453 -6316666 + L1MC4a LINE L1 5546 5899 -1909 917 183 5 5 chr1_random 2840134 2840336 -6315783 + L1PB1 LINE L1 2 203 -6660 * 8493 108 157 8 chr1_random 2840331 2841916 -6314203 + L1PB1 LINE L1 634 2454 -4409 3487 93 8 21 chr1_random 2841916 2842444 -6313675 + MER41A LTR ERV1 1 521 -33 14011 170 17 4 chr1_random 2842450 2845047 -6311072 + L1PB1 LINE L1 2451 5180 -1687 189 0 0 0 chr1_random 2845047 2845068 -6311051 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 14011 170 17 4 chr1_random 2845068 2846778 -6309341 + L1PB1 LINE L1 5180 6867 0 308 82 20 0 chr1_random 2846909 2846958 -6309161 - L1MB4 LINE L1 -10 6170 6121 7631 43 5 13 chr1_random 2847249 2848763 -6307356 + SVA Other Other 1 1386 0 957 194 82 41 chr1_random 2848780 2849048 -6307071 + MLT1D LTR MaLR 181 459 -46 373 261 9 26 chr1_random 2849213 2849328 -6306791 - MIR SINE MIR -19 243 131 181 302 19 0 chr1_random 2849617 2849670 -6306449 - MIR SINE MIR -206 56 3 423 291 123 17 chr1_random 2849682 2850004 -6306115 + L1M4 LINE L1 2193 2542 -3604 1483 129 4 39 chr1_random 2850110 2850342 -6305777 + AluJb SINE Alu 82 305 -7 27 0 0 0 chr1_random 2851384 2851411 -6304708 + AT_rich Low_complexity Low_complexity 1 27 0 2315 82 38 0 chr1_random 2851486 2851777 -6304342 + AluSg SINE Alu 1 302 -8 683 341 44 20 chr1_random 2851876 2852172 -6303947 + L3 LINE CR1 1274 1576 -1 1657 116 4 0 chr1_random 2852331 2852556 -6303563 - AluSx SINE Alu -86 226 1 2964 99 33 35 chr1_random 2853391 2853845 -6302274 + MLT2A2 LTR ERVL 1 453 0 289 302 142 6 chr1_random 2853846 2854015 -6302104 + MIR SINE MIR 70 261 -1 1908 156 0 35 chr1_random 2854347 2854662 -6301457 - AluJo SINE Alu -8 304 1 333 286 133 38 chr1_random 2855253 2855457 -6300662 + MIR SINE MIR 30 240 -22 725 201 92 16 chr1_random 2857433 2857617 -6298502 + AluSx SINE Alu 21 218 -94 245 306 83 0 chr1_random 2857928 2858072 -6298047 + L1ME4a LINE L1 5963 6118 -3 26 50 0 0 chr1_random 2858241 2858281 -6297838 + AT_rich Low_complexity Low_complexity 1 40 0 241 232 101 0 chr1_random 2858761 2858830 -6297289 - L2 LINE L2 0 3272 3197 1848 233 52 7 chr1_random 2859066 2859512 -6296607 - MER82 DNA MER2_type 0 653 188 804 132 0 8 chr1_random 2859514 2859635 -6296484 + AluSq/x SINE Alu 1 120 -193 2234 106 0 7 chr1_random 2859635 2859937 -6296182 + AluSx SINE Alu 1 300 -12 933 185 0 26 chr1_random 2859937 2860132 -6295987 - MER82 DNA MER2_type -462 191 2 279 0 0 0 chr1_random 2860150 2860181 -6295938 + (T)n Simple_repeat Simple_repeat 1 31 0 2240 125 0 0 chr1_random 2860542 2860854 -6295265 - AluSx SINE Alu 0 312 1 2218 76 4 0 chr1_random 2861159 2861435 -6294684 + AluSq SINE Alu 27 303 -10 1483 189 82 55 chr1_random 2861507 2861642 -6294477 - Charlie1b DNA MER1_type -2244 517 387 2141 106 14 0 chr1_random 2861642 2861924 -6294195 + AluSx SINE Alu 1 286 -26 1483 189 82 55 chr1_random 2861924 2862191 -6293928 - Charlie1b DNA MER1_type -2374 387 97 2375 96 3 0 chr1_random 2862191 2862493 -6293626 - AluSp SINE Alu -10 303 1 1483 189 82 55 chr1_random 2862493 2862580 -6293539 - Charlie1b DNA MER1_type -2664 97 14 498 291 77 26 chr1_random 2862584 2862924 -6293195 - L1ME LINE L1 -505 5661 5305 2997 61 28 0 chr1_random 2863086 2863479 -6292640 + MLT2A1 LTR ERVL 1 404 -40 183 156 0 0 chr1_random 2863481 2863513 -6292606 + (CATATA)n Simple_repeat Simple_repeat 6 37 0 480 72 78 12 chr1_random 2863544 2863710 -6292409 + (TA)n Simple_repeat Simple_repeat 1 177 0 24 0 0 0 chr1_random 2863854 2863878 -6292241 + AT_rich Low_complexity Low_complexity 1 24 0 325 68 0 68 chr1_random 2863879 2863892 -6292227 + MLT2A1 LTR ERVL 390 402 -42 381 43 0 0 chr1_random 2863892 2863939 -6292180 + (CA)n Simple_repeat Simple_repeat 2 48 0 325 68 0 68 chr1_random 2863939 2863984 -6292135 + MLT2A1 LTR ERVL 402 444 0 194 339 149 6 chr1_random 2863985 2864153 -6291966 + MIR SINE MIR 70 261 -1 2089 138 0 25 chr1_random 2864542 2864862 -6291257 + AluSx SINE Alu 1 312 0 194 342 101 0 chr1_random 2865414 2865493 -6290626 - L2 LINE L2 -23 3249 3163 196 301 0 68 chr1_random 2865535 2865608 -6290511 - L2 LINE L2 -16 3256 3189 * 298 273 193 75 chr1_random 2865593 2865981 -6290138 - L2 LINE L2 -2436 878 445 291 250 119 38 chr1_random 2865996 2866156 -6289963 - MLT1J LTR MaLR -338 173 1 193 370 0 30 chr1_random 2866427 2866527 -6289592 + L2 LINE L2 3176 3272 0 2521 199 52 106 chr1_random 2866603 2867966 -6288153 + L1M3e LINE L1 499 1788 -5242 205 218 287 0 chr1_random 2868228 2868315 -6287804 + MER5B DNA MER1_type 67 178 0 575 125 0 0 chr1_random 2868504 2868584 -6287535 + AluS SINE Alu 1 80 -232 2287 92 0 3 chr1_random 2869226 2869521 -6286598 - AluSx SINE Alu -18 294 1 45 34 0 0 chr1_random 2870229 2870288 -6285831 + AT_rich Low_complexity Low_complexity 1 59 0 494 182 61 10 chr1_random 2870603 2870702 -6285417 - MER5A DNA MER1_type -77 112 9 2204 86 0 0 chr1_random 2870743 2871012 -6285107 - AluY SINE Alu -42 269 1 520 333 41 15 chr1_random 2871063 2871333 -6284786 - MER90 LTR ERV1 -48 566 290 638 181 17 9 chr1_random 2871333 2871449 -6284670 + FLAM_C SINE Alu 1 117 -26 21 36 0 0 chr1_random 2871455 2871483 -6284636 + AT_rich Low_complexity Low_complexity 1 28 0 356 301 155 38 chr1_random 2872017 2872230 -6283889 + MIR SINE MIR 7 244 -18 329 340 227 28 chr1_random 2872282 2872529 -6283590 - L2 LINE L2 0 3272 2977 330 236 57 28 chr1_random 2872576 2872682 -6283437 + L1M4b LINE L1 59 167 -6692 969 95 0 0 chr1_random 2874941 2875067 -6281052 + FRAM SINE Alu 50 175 -1 464 276 99 48 chr1_random 2875084 2875361 -6280758 + L1M4b LINE L1 2523 2784 -4354 1146 141 115 52 chr1_random 2875361 2875666 -6280453 - MER33 DNA MER1_type 0 324 1 180 0 0 0 chr1_random 2875674 2875694 -6280425 + (CAA)n Simple_repeat Simple_repeat 1 20 0 464 276 99 48 chr1_random 2875694 2875910 -6280209 + L1M4b LINE L1 2790 3051 -4087 1406 231 22 0 chr1_random 2875928 2876201 -6279918 + AluJo SINE Alu 1 279 -33 677 168 8 0 chr1_random 2876202 2876333 -6279786 + GA-rich Low_complexity Low_complexity 1 132 0 631 223 133 5 chr1_random 2876336 2876524 -6279595 + L1M4b LINE L1 3013 3224 -3733 279 318 0 24 chr1_random 2876931 2877016 -6279103 + L2 LINE L2 3188 3270 -2 479 254 9 0 chr1_random 2877172 2877286 -6278833 - MIR SINE MIR 0 262 148 1538 171 36 7 chr1_random 2877293 2877573 -6278546 - AluJo SINE Alu -24 288 1 1107 225 74 3 chr1_random 2877626 2877937 -6278182 + L1ME2 LINE L1 5293 5625 -553 586 226 32 26 chr1_random 2877939 2878094 -6278025 + L1MB8 LINE L1 6017 6172 -6 1484 172 3 57 chr1_random 2878392 2878689 -6277430 + AluJo SINE Alu 12 292 -20 1039 176 198 58 chr1_random 2881411 2881740 -6274379 + THE1C LTR MaLR 1 375 0 1815 177 32 10 chr1_random 2881906 2882216 -6273903 + MER1B DNA MER1_type 23 339 0 1845 190 42 165 chr1_random 2882426 2882764 -6273355 - LTR8A LTR ERV1 0 727 349 186 43 0 0 chr1_random 2882764 2882787 -6273332 + (GGGGA)n Simple_repeat Simple_repeat 4 26 0 180 0 0 0 chr1_random 2882791 2882811 -6273308 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1845 190 42 165 chr1_random 2882811 2883255 -6272864 - LTR8A LTR ERV1 -381 346 37 2262 112 0 6 chr1_random 2883836 2884148 -6271971 - AluSx SINE Alu -2 310 1 1677 177 0 32 chr1_random 2884153 2884469 -6271650 - AluJb SINE Alu -6 306 1 339 264 182 0 chr1_random 2885007 2885117 -6271002 - L2 LINE L2 -1 3271 3142 806 192 0 0 chr1_random 2885228 2885358 -6270761 - FLAM_A SINE Alu -2 131 2 835 128 0 8 chr1_random 2886040 2886157 -6269962 + FLAM_C SINE Alu 3 118 -15 2109 127 7 0 chr1_random 2886164 2886456 -6269663 - AluSx SINE Alu -18 294 1 24 0 0 0 chr1_random 2886456 2886480 -6269639 + AT_rich Low_complexity Low_complexity 1 24 0 2361 75 10 0 chr1_random 2886552 2886846 -6269273 - AluSp SINE Alu -16 297 1 1160 180 5 18 chr1_random 2888037 2888254 -6267865 + AluJo SINE Alu 1 214 -98 315 288 78 42 chr1_random 2888461 2888652 -6267467 + L1ME2 LINE L1 5725 5922 -244 945 168 110 21 chr1_random 2889516 2889707 -6266412 - MER3 DNA MER1_type -1 208 1 1115 133 13 76 chr1_random 2889727 2889785 -6266334 - L1MA5 LINE L1 0 6300 6240 1963 168 0 0 chr1_random 2889785 2890076 -6266043 - AluJb SINE Alu -21 291 1 1115 133 13 76 chr1_random 2890076 2890242 -6265877 - L1MA5 LINE L1 -60 6240 6090 2589 55 0 6 chr1_random 2890451 2890762 -6265357 + AluY SINE Alu 1 309 -2 190 313 0 78 chr1_random 2890765 2890829 -6265290 + MIR SINE MIR 20 78 -184 809 146 23 23 chr1_random 2890918 2891048 -6265071 - FLAM_C SINE Alu -3 130 1 530 219 8 0 chr1_random 2891048 2891171 -6264948 + MIR SINE MIR 137 260 -2 836 263 9 23 chr1_random 2891409 2891626 -6264493 - MIR SINE MIR -27 235 22 325 224 53 0 chr1_random 2891858 2891934 -6264185 + MER20B DNA MER1_type 10 89 -694 871 254 123 68 chr1_random 2892021 2892308 -6263811 + MER20B DNA MER1_type 243 571 -212 1508 185 10 134 chr1_random 2892308 2892384 -6263735 - MLT1A1 LTR MaLR 0 365 281 2219 89 11 0 chr1_random 2892384 2892693 -6263426 + AluSq SINE Alu 1 312 0 1508 185 10 134 chr1_random 2892693 2893032 -6263087 - MLT1A1 LTR MaLR -84 281 1 871 254 123 68 chr1_random 2893032 2893248 -6262871 + MER20B DNA MER1_type 571 774 -9 2356 111 0 0 chr1_random 2893488 2893794 -6262325 - AluSx SINE Alu -6 306 1 18280 33 8 0 chr1_random 2893820 2896005 -6260114 - L1PA4 LINE L1 -806 5340 3139 7306 30 0 0 chr1_random 2896005 2896813 -6259306 + L1PA4 LINE L1 5346 6155 0 2035 90 8 4 chr1_random 2897435 2897703 -6258416 + AluSq SINE Alu 35 303 -10 301 267 111 11 chr1_random 2897764 2897854 -6258265 - MIR SINE MIR -78 184 86 811 252 101 5 chr1_random 2897955 2898173 -6257946 - MIR SINE MIR -21 241 3 1918 176 102 13 chr1_random 2898308 2898701 -6257418 + MSTA LTR MaLR 1 428 0 265 269 0 0 chr1_random 2899419 2899486 -6256633 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 2308 109 3 0 chr1_random 2899530 2899841 -6256278 - AluSx SINE Alu 0 312 1 377 249 161 36 chr1_random 2900182 2900375 -6255744 - MIR SINE MIR 0 262 46 700 171 32 32 chr1_random 2900424 2900547 -6255572 - FLAM_A SINE Alu -10 123 1 321 87 0 0 chr1_random 2900830 2900876 -6255243 - MADE1 DNA Mariner 0 80 35 2318 186 103 27 chr1_random 2901502 2902093 -6254026 + LTR48 LTR ERV1 1 636 -151 1684 234 30 127 chr1_random 2902093 2902858 -6253261 - LTR8 LTR ERV1 0 691 1 588 183 61 30 chr1_random 2902859 2902990 -6253129 + LTR48 LTR ERV1 634 768 -19 233 246 31 0 chr1_random 2903035 2903100 -6253019 + L1M3 LINE L1 5861 5927 -253 2835 118 52 9 chr1_random 2903121 2903562 -6252557 - LTR1 LTR ERV1 -9 776 317 850 183 43 16 chr1_random 2903650 2903836 -6252283 + LTR7 LTR ERV1 1 191 -259 909 76 0 8 chr1_random 2904064 2904183 -6251936 + LTR7 LTR ERV1 333 450 0 1286 142 58 12 chr1_random 2904213 2904453 -6251666 - LTR1 LTR ERV1 -534 251 1 1418 147 0 30 chr1_random 2904485 2904716 -6251403 + MER1B DNA MER1_type 116 339 0 2094 97 7 21 chr1_random 2904746 2905036 -6251083 + AluSc SINE Alu 9 294 -15 1160 180 143 4 chr1_random 2906645 2906890 -6249229 - MLT2B1 LTR ERVL -215 305 27 213 374 168 0 chr1_random 2907123 2907230 -6248889 - MIR3 SINE MIR -18 190 66 2227 100 10 7 chr1_random 2907245 2907544 -6248575 - AluSx SINE Alu -10 302 3 422 239 196 0 chr1_random 2907677 2907840 -6248279 - L2 LINE L2 -13 3300 3106 2350 103 0 3 chr1_random 2907840 2908151 -6247968 + AluSg SINE Alu 1 310 0 974 242 5 5 chr1_random 2908245 2908464 -6247655 + AluJo SINE Alu 3 221 -91 228 304 76 0 chr1_random 2908600 2908679 -6247440 - L2 LINE L2 -453 2861 2777 929 237 61 4 chr1_random 2908694 2909233 -6246886 + L1MEc LINE L1 1525 2175 -4221 185 62 0 31 chr1_random 2909236 2909268 -6246851 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 949 276 50 10 chr1_random 2910262 2910615 -6245504 + LTR16C LTR ERVL 38 453 -38 330 283 43 101 chr1_random 2910653 2910832 -6245287 - L1 LINE L1 -1618 4528 4340 712 116 18 27 chr1_random 2910832 2910944 -6245175 - HY1 scRNA scRNA -1 111 1 330 283 43 101 chr1_random 2910944 2911059 -6245060 - L1 LINE L1 -1806 4340 4265 1805 156 9 33 chr1_random 2911059 2911392 -6244727 - L1MB7 LINE L1 -9 6175 5851 330 283 43 101 chr1_random 2911392 2911534 -6244585 - L1 LINE L1 -1881 4265 4116 27 29 0 0 chr1_random 2911735 2911769 -6244350 + AT_rich Low_complexity Low_complexity 1 34 0 676 86 69 9 chr1_random 2911990 2912074 -6244045 - MER6 DNA MER2_type -111 754 660 2760 10 0 0 chr1_random 2912074 2912372 -6243747 + AluYa5 SINE Alu 12 309 -2 676 86 69 9 chr1_random 2912372 2912403 -6243716 - MER6 DNA MER2_type -205 660 632 1748 171 35 0 chr1_random 2912406 2912692 -6243427 + AluJo SINE Alu 1 296 -16 904 243 36 40 chr1_random 2913257 2913508 -6242611 - MIR SINE MIR 0 262 13 212 234 21 0 chr1_random 2913508 2913555 -6242564 - MIR SINE MIR -202 60 13 206 234 21 0 chr1_random 2913555 2913602 -6242517 - MIR SINE MIR -202 60 13 237 203 17 17 chr1_random 2913602 2913661 -6242458 - MIR SINE MIR -202 60 2 526 254 6 30 chr1_random 2914141 2914306 -6241813 - MER104 DNA Tc2 -6 174 14 346 342 117 52 chr1_random 2915383 2915880 -6240239 - L2 LINE L2 -929 2385 1857 2053 137 0 7 chr1_random 2916272 2916579 -6239540 + AluSx SINE Alu 1 305 -7 5552 164 21 33 chr1_random 2917780 2918210 -6237909 + L1PA16 LINE L1 4123 4557 -1609 2153 117 0 13 chr1_random 2918210 2918510 -6237609 + AluSx SINE Alu 8 303 -9 5552 164 21 33 chr1_random 2918510 2920148 -6235971 + L1PA16 LINE L1 4557 6157 -9 188 333 80 0 chr1_random 2920752 2920827 -6235292 + L2 LINE L2 3167 3247 -25 500 198 0 10 chr1_random 2921226 2921327 -6234792 - L1MD3 LINE L1 -12 7983 7884 522 162 38 9 chr1_random 2921347 2921452 -6234667 - L1MD3 LINE L1 -258 7737 7630 337 162 162 0 chr1_random 2921474 2921548 -6234571 - L1MD3 LINE L1 -215 7780 7695 2061 99 18 7 chr1_random 2921717 2922001 -6234118 - AluSq SINE Alu -4 309 23 364 319 65 42 chr1_random 2922079 2922389 -6233730 - L1MCb LINE L1 -5689 356 40 1052 204 64 76 chr1_random 2923313 2923485 -6232634 + MER2 DNA MER2_type 7 180 -165 2162 113 0 92 chr1_random 2923485 2923856 -6232263 - MER1B DNA MER1_type 0 337 1 1052 204 64 76 chr1_random 2923856 2923955 -6232164 + MER2 DNA MER2_type 180 276 -69 816 194 0 0 chr1_random 2923955 2924084 -6232035 - FLAM_A SINE Alu -3 130 2 1052 204 64 76 chr1_random 2924084 2924154 -6231965 + MER2 DNA MER2_type 276 345 0 1596 161 0 8 chr1_random 2924522 2924782 -6231337 + AluJb SINE Alu 33 290 -22 962 144 60 6 chr1_random 2924782 2924949 -6231170 + MER6 DNA MER2_type 689 864 -1 291 296 78 0 chr1_random 2925165 2925280 -6230839 - MIR SINE MIR -17 245 122 1833 176 0 0 chr1_random 2926425 2926732 -6229387 - AluSx SINE Alu -1 311 5 249 300 89 0 chr1_random 2926772 2926862 -6229257 - L2 LINE L2 0 3272 3175 2122 104 30 0 chr1_random 2927099 2927398 -6228721 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr1_random 2927513 2927535 -6228584 + AT_rich Low_complexity Low_complexity 1 22 0 299 260 27 0 chr1_random 2928470 2928543 -6227576 - Charlie2a DNA MER1_type -12 2850 2776 663 224 82 0 chr1_random 2928586 2928769 -6227350 - Charlie2a DNA MER1_type -1199 1663 1466 2318 95 3 0 chr1_random 2928952 2929248 -6226871 - AluSg SINE Alu -13 297 1 814 281 32 26 chr1_random 2929263 2929573 -6226546 - Charlie2a DNA MER1_type -2469 313 2 743 246 15 121 chr1_random 2929722 2929994 -6226125 + MIR SINE MIR 10 252 -10 250 275 12 0 chr1_random 2930017 2930097 -6226022 - Charlie2a DNA MER1_type -1252 1610 1530 2284 90 0 7 chr1_random 2931572 2931872 -6224247 + AluSc SINE Alu 1 298 -11 356 297 36 6 chr1_random 2932720 2932885 -6223234 - L1MC4 LINE L1 -63 7979 7810 1204 106 0 0 chr1_random 2932889 2933050 -6223069 + AluSg/x SINE Alu 131 291 -21 272 227 0 45 chr1_random 2933060 2933126 -6222993 - MER5A DNA MER1_type -123 66 4 498 188 230 0 chr1_random 2933291 2933456 -6222663 + MER89 LTR ERV1 1 203 -356 216 0 0 0 chr1_random 2933529 2933553 -6222566 + (A)n Simple_repeat Simple_repeat 1 24 0 1898 159 8 42 chr1_random 2933556 2933771 -6222348 + MER89 LTR ERV1 219 419 -140 1760 175 3 13 chr1_random 2933771 2934080 -6222039 + AluJb SINE Alu 2 307 -5 1898 159 8 42 chr1_random 2934080 2934217 -6221902 + MER89 LTR ERV1 419 559 0 192 295 115 26 chr1_random 2934315 2934393 -6221726 + MIR SINE MIR 31 115 -147 223 286 104 58 chr1_random 2934435 2934589 -6221530 + MIR SINE MIR 88 248 -14 2321 74 3 13 chr1_random 2934830 2935128 -6220991 + AluSp SINE Alu 1 295 -18 447 269 0 0 chr1_random 2935311 2935419 -6220700 + L1ME2 LINE L1 6035 6142 -22 398 294 52 29 chr1_random 2935431 2935567 -6220552 + L2 LINE L2 3133 3271 -1 380 265 0 43 chr1_random 2935911 2936028 -6220091 + L2 LINE L2 3200 3311 -2 3150 158 15 4 chr1_random 2936105 2936629 -6219490 + L1MC1 LINE L1 5789 6318 -15 197 257 54 27 chr1_random 2936826 2936900 -6219219 + MIR3 SINE MIR 118 193 -15 380 297 67 52 chr1_random 2936932 2937048 -6219071 + L1 LINE L1 3589 3702 -2444 1698 159 37 14 chr1_random 2937048 2937344 -6218775 + AluSx SINE Alu 1 303 -9 380 297 67 52 chr1_random 2937344 2937631 -6218488 + L1 LINE L1 3702 3998 -2148 1065 234 8 27 chr1_random 2937843 2938099 -6218020 - MIR SINE MIR -7 255 5 291 288 81 30 chr1_random 2938110 2938346 -6217773 + L1 LINE L1 4177 4424 -1722 197 284 148 25 chr1_random 2939844 2939925 -6216194 - L2 LINE L2 -3 3269 3179 202 331 56 60 chr1_random 2940888 2941069 -6215050 + L2 LINE L2 2082 2263 -1051 423 291 73 18 chr1_random 2941069 2941234 -6214885 + MER5B DNA MER1_type 5 178 0 202 331 56 60 chr1_random 2941234 2941318 -6214801 + L2 LINE L2 2263 2346 -968 25 31 0 0 chr1_random 2942047 2942079 -6214040 + AT_rich Low_complexity Low_complexity 1 32 0 1841 100 0 4 chr1_random 2942137 2942418 -6213701 + AluSg SINE Alu 62 341 0 184 323 16 0 chr1_random 2942630 2942692 -6213427 + L2 LINE L2 3019 3081 -232 2487 55 0 61 chr1_random 2943260 2943590 -6212529 - AluY SINE Alu -1 310 1 947 158 153 20 chr1_random 2943802 2944005 -6212114 + MSTA LTR MaLR 1 230 -198 466 126 92 23 chr1_random 2943996 2944083 -6212036 + MSTA LTR MaLR 138 230 -198 * 246 221 147 0 chr1_random 2944074 2944142 -6211977 + MSTA LTR MaLR 138 215 -213 * 456 128 105 23 chr1_random 2944132 2944218 -6211901 + MSTA LTR MaLR 138 230 -198 373 226 65 0 chr1_random 2944209 2944302 -6211817 + MSTA LTR MaLR 138 236 -192 * 1231 147 182 12 chr1_random 2944274 2944532 -6211587 + MSTA LTR MaLR 127 428 0 189 0 0 0 chr1_random 2944743 2944764 -6211355 + (A)n Simple_repeat Simple_repeat 1 21 0 257 203 68 14 chr1_random 2944883 2944957 -6211162 + LTR67 LTR ERVL 459 536 -21 516 258 129 4 chr1_random 2945183 2945408 -6210711 - MER112 DNA MER1_type 0 260 8 184 169 85 34 chr1_random 2945822 2945881 -6210238 + L3 LINE CR1 1207 1268 -309 22 35 0 0 chr1_random 2946421 2946450 -6209669 + AT_rich Low_complexity Low_complexity 1 29 0 986 80 0 0 chr1_random 2946452 2946577 -6209542 + AluY SINE Alu 176 300 -11 254 296 151 58 chr1_random 2946751 2946923 -6209196 - L2 LINE L2 -107 3165 2978 757 329 107 40 chr1_random 2947990 2948360 -6207759 - L2 LINE L2 -650 2664 2243 2379 50 6 59 chr1_random 2948360 2948680 -6207439 + AluY SINE Alu 1 303 -8 757 329 107 40 chr1_random 2948680 2948863 -6207256 - L2 LINE L2 -1071 2243 2074 369 292 32 94 chr1_random 2948874 2949058 -6207061 - L2 LINE L2 -1517 1797 1634 1852 155 0 3 chr1_random 2949058 2949348 -6206771 + AluJb SINE Alu 1 289 -23 369 292 32 94 chr1_random 2949348 2949440 -6206679 - L2 LINE L2 -1680 1634 1538 579 91 0 0 chr1_random 2949799 2949876 -6206243 + HY3 scRNA scRNA 20 96 -5 1684 148 7 50 chr1_random 2950376 2950521 -6205598 + AluJo SINE Alu 1 128 -184 4388 117 24 34 chr1_random 2950521 2950594 -6205525 + L1PA13 LINE L1 5470 5542 -621 2013 149 3 0 chr1_random 2950594 2950896 -6205223 - AluSx SINE Alu -9 303 1 4388 117 24 34 chr1_random 2950896 2951523 -6204596 + L1PA13 LINE L1 5542 6163 0 1684 148 7 50 chr1_random 2951523 2951680 -6204439 + AluJo SINE Alu 128 290 -22 31 0 0 0 chr1_random 2951680 2951711 -6204408 + AT_rich Low_complexity Low_complexity 1 31 0 2107 133 0 16 chr1_random 2951711 2952027 -6204092 + AluSx SINE Alu 2 312 0 2481 178 64 22 chr1_random 2952168 2952733 -6203386 + L1 LINE L1 3124 3790 -2356 1819 149 0 0 chr1_random 2952733 2953001 -6203118 + AluJb SINE Alu 31 298 -14 2481 178 64 22 chr1_random 2953001 2953176 -6202943 + L1 LINE L1 3790 3956 -2190 2034 152 0 0 chr1_random 2953186 2953483 -6202636 + AluSx SINE Alu 4 300 -12 1421 220 4 0 chr1_random 2953519 2953783 -6202336 + AluJo SINE Alu 1 265 -47 2544 205 81 78 chr1_random 2954209 2955034 -6201085 + L1MC4 LINE L1 6830 7657 -385 2093 122 3 19 chr1_random 2955034 2955346 -6200773 + AluSx SINE Alu 1 307 -5 506 179 0 53 chr1_random 2955346 2955536 -6200583 + (TA)n Simple_repeat Simple_repeat 1 180 0 1009 204 41 96 chr1_random 2955562 2955985 -6200134 + L1MC4 LINE L1 7571 7994 -1 1820 154 13 7 chr1_random 2956016 2956321 -6199798 - AluJo SINE Alu -5 307 1 21 36 0 0 chr1_random 2957220 2957248 -6198871 + AT_rich Low_complexity Low_complexity 1 28 0 1809 169 0 13 chr1_random 2957285 2957598 -6198521 + AluJb SINE Alu 1 309 -3 2404 98 3 0 chr1_random 2957674 2957981 -6198138 - AluSx SINE Alu -4 308 1 2220 114 0 3 chr1_random 2959062 2959370 -6196749 + AluY SINE Alu 1 307 -4 1825 131 13 48 chr1_random 2959859 2960172 -6195947 + AluSx SINE Alu 1 302 -10 1247 122 0 17 chr1_random 2960185 2960366 -6195753 + AluSx SINE Alu 1 178 -134 537 261 52 0 chr1_random 2961454 2961588 -6194531 + MIR SINE MIR 36 176 -86 2053 154 0 0 chr1_random 2961699 2962004 -6194115 - AluJo SINE Alu -7 305 1 399 216 10 21 chr1_random 2962005 2962102 -6194017 + L2 LINE L2 3210 3305 -8 627 138 101 80 chr1_random 2962263 2962284 -6193835 - FLAM_C SINE Alu -169 143 124 427 191 43 0 chr1_random 2962284 2962378 -6193741 - L1MB8 LINE L1 0 6178 6081 627 138 101 80 chr1_random 2962378 2962494 -6193625 - FLAM_C SINE Alu -188 124 3 2126 102 24 17 chr1_random 2962992 2963285 -6192834 - AluSx SINE Alu -13 299 5 1722 191 149 31 chr1_random 2963411 2963793 -6192326 + MLT2B1 LTR ERVL 1 427 -93 353 179 0 32 chr1_random 2963793 2963916 -6192203 + (TA)n Simple_repeat Simple_repeat 1 119 0 1928 164 0 3 chr1_random 2964071 2964369 -6191750 + AluJb SINE Alu 1 297 -15 1598 170 20 46 chr1_random 2967696 2968002 -6188117 + AluJo SINE Alu 1 298 -14 506 313 28 6 chr1_random 2968038 2968220 -6187899 + MIR SINE MIR 76 261 -1 387 282 73 85 chr1_random 2968257 2968505 -6187614 - MIR SINE MIR -13 249 5 504 256 19 56 chr1_random 2968727 2968887 -6187232 - MIR SINE MIR -62 200 47 2070 118 3 42 chr1_random 2969362 2969668 -6186451 + AluSx SINE Alu 1 294 -18 2392 87 3 0 chr1_random 2969892 2970190 -6185929 - AluSp SINE Alu -14 299 1 2043 118 14 3 chr1_random 2970604 2970900 -6185219 + AluSx SINE Alu 1 299 -13 204 303 134 34 chr1_random 2971066 2971185 -6184934 - MER5A DNA MER1_type -9 180 50 2514 55 0 19 chr1_random 2971262 2971574 -6184545 + AluY SINE Alu 1 306 -5 393 266 115 7 chr1_random 2971582 2971721 -6184398 - MIR SINE MIR -31 231 78 1469 181 37 50 chr1_random 2972038 2972336 -6183783 - AluJb SINE Alu -18 294 1 224 286 30 77 chr1_random 2972590 2972758 -6183361 - L2 LINE L2 -5 3308 3149 1810 181 20 0 chr1_random 2972788 2973080 -6183039 + AluJb SINE Alu 1 298 -14 247 319 115 38 chr1_random 2973128 2973285 -6182834 - MIR SINE MIR -20 242 74 2263 118 0 6 chr1_random 2973453 2973768 -6182351 + AluSq SINE Alu 1 313 0 1155 143 16 0 chr1_random 2973935 2974124 -6181995 + MER90 LTR ERV1 30 221 -393 30 59 0 0 chr1_random 2974326 2974377 -6181742 + AT_rich Low_complexity Low_complexity 1 51 0 727 203 0 0 chr1_random 2974452 2974580 -6181539 - MER5B DNA MER1_type -46 132 5 281 226 137 0 chr1_random 2975170 2975294 -6180825 + L1MB4 LINE L1 6016 6156 -24 349 136 0 15 chr1_random 2975296 2975362 -6180757 + L1MB8 LINE L1 6114 6178 0 614 138 0 109 chr1_random 2975388 2975526 -6180593 + FLAM_A SINE Alu 20 142 0 276 236 0 0 chr1_random 2976576 2976631 -6179488 - MER5B DNA MER1_type 0 178 124 707 185 22 76 chr1_random 2977204 2977266 -6178853 + MER5B DNA MER1_type 2 66 -112 2784 33 0 0 chr1_random 2977266 2977570 -6178549 + AluY SINE Alu 2 305 -6 707 185 22 76 chr1_random 2977570 2977691 -6178428 + MER5B DNA MER1_type 66 175 -3 1622 147 13 81 chr1_random 2977857 2978186 -6177933 + AluSx SINE Alu 1 308 0 2269 102 3 0 chr1_random 2978216 2978531 -6177588 - AluSc SINE Alu 0 309 1 2101 132 10 0 chr1_random 2978743 2979039 -6177080 + AluJb SINE Alu 1 299 -13 1006 199 24 57 chr1_random 2979848 2980094 -6176025 + AluJo SINE Alu 75 312 0 1678 216 160 26 chr1_random 2980096 2980649 -6175470 + L1MC4a LINE L1 5315 5959 -1849 2572 63 7 0 chr1_random 2980649 2980949 -6175170 + AluY SINE Alu 1 302 -9 1678 216 160 26 chr1_random 2980949 2981006 -6175113 + L1MC4a LINE L1 5959 6007 -1801 1444 182 0 23 chr1_random 2981026 2981284 -6174835 - AluJb SINE Alu -52 260 9 327 146 37 24 chr1_random 2981287 2981369 -6174750 + Charlie1 DNA MER1_type 2462 2544 -217 1060 132 0 0 chr1_random 2981369 2981513 -6174606 + AluSg/x SINE Alu 151 294 -18 225 0 0 0 chr1_random 2981599 2981624 -6174495 + (CA)n Simple_repeat Simple_repeat 2 26 0 2108 135 3 10 chr1_random 2981641 2981953 -6174166 - AluSx SINE Alu -2 310 1 334 177 27 19 chr1_random 2981968 2982147 -6173972 + Charlie1 DNA MER1_type 2614 2761 0 515 209 122 56 chr1_random 2982264 2982460 -6173659 - LTR67 LTR ERVL -252 305 97 983 288 113 13 chr1_random 2982528 2983044 -6173075 - ERVL LTR ERVL -1108 4546 4006 369 307 22 22 chr1_random 2983257 2983394 -6172725 - ERVL LTR ERVL -1945 3819 3683 895 295 197 7 chr1_random 2983535 2984094 -6172025 + L2 LINE L2 668 1332 -1982 2022 138 27 3 chr1_random 2984333 2984629 -6171490 - AluJb SINE Alu -9 303 1 2310 94 30 0 chr1_random 2985878 2986176 -6169943 + AluSp SINE Alu 1 307 -6 1569 178 9 41 chr1_random 2986457 2986772 -6169347 - MER7A DNA MER2_type -43 303 1 540 278 96 81 chr1_random 2987456 2987863 -6168256 + LTR67 LTR ERVL 96 508 -49 198 100 100 0 chr1_random 2988384 2988424 -6167695 + L2 LINE L2 3267 3310 -3 233 273 85 85 chr1_random 2989690 2989866 -6166253 - L1MC4 LINE L1 -7 8035 7860 1117 103 0 0 chr1_random 2989895 2990041 -6166078 - AluSg/x SINE Alu -17 295 150 372 172 0 0 chr1_random 2990042 2990106 -6166013 - AluJ SINE Alu -106 196 133 595 185 15 44 chr1_random 2990108 2990243 -6165876 - AluJ SINE Alu -170 132 2 2322 70 17 20 chr1_random 2990247 2990568 -6165551 - AluSc SINE Alu 0 309 1 590 231 20 0 chr1_random 2990579 2990726 -6165393 + L1MD3 LINE L1 7846 7995 0 320 280 301 0 chr1_random 2990738 2990931 -6165188 + L1ME3A LINE L1 5910 6160 -10 670 329 65 17 chr1_random 2991157 2991571 -6164548 - ERVL LTR ERVL -1324 4440 4007 2291 86 41 0 chr1_random 2996829 2997119 -6159000 + AluY SINE Alu 1 302 -9 665 331 16 17 chr1_random 2997196 2997679 -6158440 - L1ME1 LINE L1 -44 6122 5674 4347 104 5 3 chr1_random 2997680 2998307 -6157812 - LTR10E LTR ERV1 -5 628 1 640 245 20 25 chr1_random 2998307 2998507 -6157612 - L1ME1 LINE L1 -666 5678 5480 24 32 0 0 chr1_random 2998521 2998552 -6157567 + GC_rich Low_complexity Low_complexity 1 31 0 191 319 33 44 chr1_random 3006015 3006106 -6150013 + MIR SINE MIR 98 187 -75 228 150 17 67 chr1_random 3006266 3006326 -6149793 + SN5 Other centromeric 322 378 -77 887 155 13 13 chr1_random 3007339 3007494 -6148625 - MER2 DNA MER2_type 0 345 191 7271 27 3 0 chr1_random 3007537 3008600 -6147519 + L1PA4 LINE L1 5090 6155 0 1583 127 118 35 chr1_random 3008885 3009231 -6146888 - THE1C LTR MaLR 0 375 1 180 158 0 0 chr1_random 3010042 3010080 -6146039 + C-rich Low_complexity Low_complexity 3 40 0 470 210 17 6 chr1_random 3010402 3010578 -6145541 + GA-rich Low_complexity Low_complexity 2 179 0 43048 137 26 10 chr1_random 3011211 3012002 -6144117 + HUERS-P3 LTR ERV1 181 958 -6460 1904 132 33 43 chr1_random 3012002 3012187 -6143932 + AluSx SINE Alu 1 183 -129 2303 87 0 17 chr1_random 3012187 3012486 -6143633 - AluSg SINE Alu -15 295 2 1904 132 33 43 chr1_random 3012486 3012604 -6143515 + AluSx SINE Alu 183 301 -11 43048 137 26 10 chr1_random 3012604 3017722 -6138397 + HUERS-P3 LTR ERV1 958 5994 -1424 2538 59 0 10 chr1_random 3017722 3018025 -6138094 - AluY SINE Alu -11 300 1 43048 137 26 10 chr1_random 3018025 3018191 -6137928 + HUERS-P3 LTR ERV1 5994 6156 -1262 2314 114 3 0 chr1_random 3018191 3018498 -6137621 - AluSp SINE Alu -5 308 1 43048 137 26 10 chr1_random 3018498 3019108 -6137011 + HUERS-P3 LTR ERV1 6156 6755 -663 2438 87 0 6 chr1_random 3019108 3019419 -6136700 - AluSc SINE Alu 0 309 1 43048 137 26 10 chr1_random 3019419 3019865 -6136254 + HUERS-P3 LTR ERV1 6755 7411 -7 2445 157 37 121 chr1_random 3019869 3020537 -6135582 + LTR9 LTR ERV1 1 612 0 677 176 0 0 chr1_random 3020538 3020640 -6135479 - FLAM_C SINE Alu -39 104 3 326 178 75 30 chr1_random 3020955 3021106 -6135013 - LTR16B LTR ERVL 0 464 278 2126 114 7 3 chr1_random 3021608 3021905 -6134214 - AluSx SINE Alu -14 298 1 1173 205 36 66 chr1_random 3021917 3022220 -6133899 - AluJo SINE Alu -7 295 2 2400 92 0 0 chr1_random 3022229 3022534 -6133585 - AluSg SINE Alu -5 305 1 24 77 0 0 chr1_random 3022764 3022816 -6133303 + AT_rich Low_complexity Low_complexity 1 52 0 367 185 12 0 chr1_random 3023476 3023579 -6132540 + L1PB3 LINE L1 5920 6026 -130 1359 155 5 5 chr1_random 3023696 3023915 -6132204 - AluJb SINE Alu -93 219 1 517 227 92 3 chr1_random 3024223 3024364 -6131755 - MIR SINE MIR -67 141 17 433 320 160 0 chr1_random 3024365 3024515 -6131604 - MER5A DNA MER1_type -7 182 9 210 320 82 31 chr1_random 3025493 3025590 -6130529 + MIR SINE MIR 24 125 -137 * 297 306 139 21 chr1_random 3025562 3025779 -6130340 - MIR SINE MIR -13 249 10 1760 156 81 16 chr1_random 3026412 3026719 -6129400 - MER7A DNA MER2_type 0 346 22 26 64 0 0 chr1_random 3026748 3026795 -6129324 + AT_rich Low_complexity Low_complexity 1 47 0 1573 159 22 18 chr1_random 3026902 3027178 -6128941 + AluJo SINE Alu 1 277 -35 352 191 0 0 chr1_random 3027413 3027476 -6128643 - FLAM_A SINE Alu 0 133 71 810 217 0 40 chr1_random 3027497 3027672 -6128447 - FRAM SINE Alu -7 169 2 21 71 0 0 chr1_random 3027735 3027777 -6128342 + AT_rich Low_complexity Low_complexity 1 42 0 233 158 0 0 chr1_random 3027911 3027949 -6128170 + Alu SINE Alu 1 38 -264 255 167 83 33 chr1_random 3028079 3028139 -6127980 + AluS SINE Alu 1 63 -240 802 161 0 0 chr1_random 3028163 3028287 -6127832 + AluJ SINE Alu 1 124 -188 31 0 0 0 chr1_random 3028309 3028340 -6127779 + AT_rich Low_complexity Low_complexity 1 31 0 1138 158 0 0 chr1_random 3028341 3028518 -6127601 + AluJ SINE Alu 123 299 -13 2420 73 0 3 chr1_random 3029317 3029617 -6126502 - AluY SINE Alu -12 299 1 869 202 53 102 chr1_random 3029624 3029760 -6126359 + LTR40c LTR ERVL 44 185 -280 1445 166 61 0 chr1_random 3029760 3030037 -6126082 + AluJb SINE Alu 1 294 -18 869 202 53 102 chr1_random 3030037 3030079 -6126040 + LTR40c LTR ERVL 185 228 -237 1626 169 4 0 chr1_random 3030079 3030345 -6125774 + AluJb SINE Alu 39 305 -7 869 202 53 102 chr1_random 3030345 3030549 -6125570 + LTR40c LTR ERVL 228 463 -2 1639 151 38 10 chr1_random 3030549 3030840 -6125279 + AluJo SINE Alu 1 299 -13 2169 128 3 3 chr1_random 3030842 3031154 -6124965 + AluSx SINE Alu 1 312 0 2232 124 0 0 chr1_random 3031494 3031792 -6124327 - AluSg SINE Alu -12 298 1 1769 119 0 0 chr1_random 3032457 3032692 -6123427 - AluSc SINE Alu -11 298 64 22 0 0 0 chr1_random 3032989 3033011 -6123108 + AT_rich Low_complexity Low_complexity 1 22 0 727 235 78 0 chr1_random 3033566 3033719 -6122400 + FRAM SINE Alu 2 166 0 1909 153 0 3 chr1_random 3033810 3034104 -6122015 + AluJb SINE Alu 1 293 -19 2047 135 3 3 chr1_random 3035112 3035415 -6120704 + AluSx SINE Alu 1 303 -9 1559 181 54 0 chr1_random 3035418 3035695 -6120424 + AluJo SINE Alu 1 292 -20 734 194 7 7 chr1_random 3035946 3036085 -6120034 + FAM SINE Alu 1 139 -46 866 139 8 0 chr1_random 3036085 3036214 -6119905 + FLAM_C SINE Alu 1 130 -3 837 221 0 0 chr1_random 3036639 3036788 -6119331 + FAM SINE Alu 1 149 -36 1626 180 21 0 chr1_random 3036933 3037217 -6118902 + AluJo SINE Alu 1 290 -22 23 54 0 0 chr1_random 3037221 3037258 -6118861 + AT_rich Low_complexity Low_complexity 1 37 0 847 155 0 23 chr1_random 3037303 3037432 -6118687 + FLAM_C SINE Alu 2 127 -6 2232 102 3 7 chr1_random 3037450 3037755 -6118364 + AluSg SINE Alu 1 304 -6 4235 186 90 26 chr1_random 3037758 3037898 -6118221 + L1MB3 LINE L1 4276 4406 -1777 1764 168 13 7 chr1_random 3037898 3038208 -6117911 + AluJb SINE Alu 1 312 0 4235 186 90 26 chr1_random 3038208 3038797 -6117322 + L1MB3 LINE L1 4406 4956 -1227 3557 138 19 4 chr1_random 3038797 3039310 -6116809 + MER1A DNA MER1_type 5 525 -2 4235 186 90 26 chr1_random 3039310 3039816 -6116303 + L1MB3 LINE L1 4956 5428 -755 1573 168 55 10 chr1_random 3039816 3040136 -6115983 + AluJo SINE Alu 1 312 0 4235 186 90 26 chr1_random 3040136 3040309 -6115810 + L1MB3 LINE L1 5428 5588 -595 2165 127 0 0 chr1_random 3040309 3040601 -6115518 - AluSx SINE Alu -20 292 1 4235 186 90 26 chr1_random 3040601 3040932 -6115187 + L1MB3 LINE L1 5588 6131 -52 22 0 0 0 chr1_random 3041471 3041493 -6114626 + AT_rich Low_complexity Low_complexity 1 22 0 2024 132 7 3 chr1_random 3041502 3041806 -6114313 + AluSx SINE Alu 1 305 -7 21 36 0 0 chr1_random 3042131 3042159 -6113960 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr1_random 3042175 3042199 -6113920 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2084 98 11 4 chr1_random 3042202 3042479 -6113640 - AluSc SINE Alu -30 279 1 1853 163 28 0 chr1_random 3042668 3042957 -6113162 - AluJb SINE Alu -15 297 1 689 203 15 15 chr1_random 3043625 3043758 -6112361 - FLAM_A SINE Alu 0 133 1 1793 165 3 3 chr1_random 3043777 3044080 -6112039 + AluSx SINE Alu 1 303 -9 534 254 233 30 chr1_random 3044122 3044453 -6111666 - L2 LINE L2 -916 2398 2001 1307 186 18 0 chr1_random 3044492 3044718 -6111401 - MER30 DNA MER1_type 0 230 1 1441 168 0 9 chr1_random 3044819 3045051 -6111068 + AluJb SINE Alu 70 299 -13 1191 102 6 6 chr1_random 3045345 3045512 -6110607 + AluSg SINE Alu 3 169 -141 2187 117 0 3 chr1_random 3045980 3046279 -6109840 - AluSq SINE Alu -15 298 1 866 155 42 7 chr1_random 3046945 3047087 -6109032 + Tigger4(Zombi) DNA MER2_type 1 147 -2584 * 4416 127 25 38 chr1_random 3047082 3047172 -6108947 + Tigger4(Zombi) DNA MER2_type 1979 2069 -662 2257 81 0 10 chr1_random 3047172 3047468 -6108651 - AluSc SINE Alu -16 293 1 4416 127 25 38 chr1_random 3047468 3047832 -6108287 + Tigger4(Zombi) DNA MER2_type 2069 2421 -310 2356 97 0 0 chr1_random 3047832 3048130 -6107989 + AluSq SINE Alu 1 298 -15 4416 127 25 38 chr1_random 3048130 3048437 -6107682 + Tigger4(Zombi) DNA MER2_type 2421 2731 0 270 320 115 33 chr1_random 3048562 3048684 -6107435 - MIR3 SINE MIR -70 138 7 2376 77 3 0 chr1_random 3049192 3049489 -6106630 - AluSx SINE Alu -14 298 1 2177 100 0 0 chr1_random 3049942 3050243 -6105876 + AluSc SINE Alu 1 301 -8 810 160 30 15 chr1_random 3052528 3052659 -6103460 + FLAM_C SINE Alu 1 133 0 1747 110 72 4 chr1_random 3053110 3053373 -6102746 - AluSx SINE Alu -26 286 6 807 164 0 8 chr1_random 3053415 3053543 -6102576 - FLAM_C SINE Alu -16 127 1 1401 170 99 0 chr1_random 3053631 3053925 -6102194 - MER33 DNA MER1_type 0 324 2 761 200 97 0 chr1_random 3054081 3054236 -6101883 - FRAM SINE Alu -6 170 1 2254 91 7 10 chr1_random 3055662 3055959 -6100160 - AluSx SINE Alu -16 296 1 726 193 25 0 chr1_random 3056191 3056310 -6099809 - FLAM_A SINE Alu -10 132 11 871 158 6 44 chr1_random 3056595 3056753 -6099366 + AluJb SINE Alu 136 287 -25 24 77 0 0 chr1_random 3056767 3056819 -6099300 + AT_rich Low_complexity Low_complexity 1 52 0 862 181 0 0 chr1_random 3057033 3057160 -6098959 - FLAM_C SINE Alu -6 127 1 723 207 7 43 chr1_random 3057231 3057371 -6098748 - AluJo SINE Alu -176 136 2 2285 68 0 14 chr1_random 3058558 3058850 -6097269 - AluY SINE Alu -23 288 1 21 36 0 0 chr1_random 3058859 3058887 -6097232 + AT_rich Low_complexity Low_complexity 1 28 0 1219 164 39 71 chr1_random 3058920 3059200 -6096919 - AluJo SINE Alu -5 307 37 23 33 0 0 chr1_random 3059391 3059421 -6096698 + AT_rich Low_complexity Low_complexity 1 30 0 1766 77 9 0 chr1_random 3059482 3059741 -6096378 - AluSg SINE Alu 0 321 61 2662 143 38 48 chr1_random 3059754 3060256 -6095863 + L1MB8 LINE L1 5671 6167 -11 2349 79 0 29 chr1_random 3060455 3060771 -6095348 + AluSx SINE Alu 3 309 -3 2011 139 7 0 chr1_random 3061009 3061303 -6094816 - AluSx SINE Alu -16 296 1 355 68 0 68 chr1_random 3062771 3062816 -6093303 - MLT2A1 LTR ERVL 0 444 402 381 43 0 0 chr1_random 3062816 3062863 -6093256 + (TG)n Simple_repeat Simple_repeat 2 48 0 355 68 0 68 chr1_random 3062863 3062876 -6093243 - MLT2A1 LTR ERVL -42 402 390 24 0 0 0 chr1_random 3062877 3062901 -6093218 + AT_rich Low_complexity Low_complexity 1 24 0 447 78 78 12 chr1_random 3063045 3063211 -6092908 + (TA)n Simple_repeat Simple_repeat 1 177 0 183 156 0 0 chr1_random 3063242 3063274 -6092845 + (TATATG)n Simple_repeat Simple_repeat 6 37 0 3146 82 5 2 chr1_random 3063276 3063679 -6092440 - MLT2A1 LTR ERVL -40 404 1 1661 116 4 0 chr1_random 3064514 3064739 -6091380 + AluSx SINE Alu 1 226 -86 655 341 44 20 chr1_random 3064897 3065193 -6090926 - L3 LINE CR1 -1 1576 1274 2423 98 0 3 chr1_random 3065292 3065597 -6090522 - AluSx SINE Alu -8 304 1 8031 36 7 0 chr1_random 3065623 3066592 -6089527 - L1P LINE L1 -806 5340 4365 269 308 88 50 chr1_random 3466724 3466906 -5689213 - MLT1J2 LTR MaLR -6 444 256 579 348 182 15 chr1_random 3466948 3466989 -5689130 + L2 LINE L2 1868 1901 -1413 1252 121 226 46 chr1_random 3466989 3467255 -5688864 + MER46B DNA MER2_type 1 205 -2526 1893 150 3 0 chr1_random 3467255 3467541 -5688578 - AluJb SINE Alu -22 290 4 1252 121 226 46 chr1_random 3467541 3467580 -5688539 + MER46B DNA MER2_type 205 236 0 579 348 182 15 chr1_random 3467580 3468224 -5687895 + L2 LINE L2 1901 2668 -646 22 35 0 0 chr1_random 3468951 3468980 -5687139 + AT_rich Low_complexity Low_complexity 1 29 0 390 291 88 44 chr1_random 3469030 3469482 -5686637 - L1MC/D LINE L1 -721 5447 4996 1873 140 0 34 chr1_random 3469482 3469801 -5686318 - AluSx SINE Alu 0 309 1 390 291 88 44 chr1_random 3469801 3470000 -5686119 - L1MC/D LINE L1 -1172 4996 4807 2043 124 3 10 chr1_random 3470162 3470460 -5685659 - AluSx SINE Alu -16 296 1 1162 215 124 43 chr1_random 3470644 3471016 -5685103 + MER92B LTR ERV1 2 403 -233 296 250 13 0 chr1_random 3471035 3471111 -5685008 + MER92B LTR ERV1 543 619 -17 27 0 0 0 chr1_random 3471246 3471273 -5684846 + AT_rich Low_complexity Low_complexity 1 27 0 254 275 96 64 chr1_random 3471611 3472255 -5683864 + L1M4 LINE L1 2312 2976 -3170 2129 237 14 20 chr1_random 3472568 3473062 -5683057 - LTR53 LTR ERVL -22 497 7 33 25 0 0 chr1_random 3473105 3473145 -5682974 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr1_random 3474175 3474218 -5681901 + AT_rich Low_complexity Low_complexity 1 43 0 305 295 85 8 chr1_random 3474328 3474457 -5681662 - L2 LINE L2 0 3313 3175 22 35 0 0 chr1_random 3474577 3474606 -5681513 + AT_rich Low_complexity Low_complexity 1 29 0 262 293 8 32 chr1_random 3474619 3474742 -5681377 + L1MCa LINE L1 6 125 -6301 * 8778 223 68 22 chr1_random 3474739 3477194 -5678925 + L1MC3 LINE L1 5160 7733 -52 2763 172 22 11 chr1_random 3477194 3477741 -5678378 + LTR38 LTR ERV1 3 555 -1 8778 223 68 22 chr1_random 3477741 3477790 -5678329 + L1MC3 LINE L1 7733 7778 -7 291 305 127 1 chr1_random 3477943 3478196 -5677923 + L1ME LINE L1 5333 5614 -550 795 223 78 8 chr1_random 3478198 3478454 -5677665 + Charlie1 DNA MER1_type 2485 2758 -3 24 77 0 0 chr1_random 3478577 3478629 -5677490 + AT_rich Low_complexity Low_complexity 1 52 0 2095 145 37 0 chr1_random 3478780 3479131 -5676988 + THE1B LTR MaLR 1 364 0 206 222 0 0 chr1_random 3479399 3479435 -5676684 + polypurine Low_complexity Low_complexity 1 36 0 297 0 0 0 chr1_random 3479972 3480005 -5676114 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 528 239 15 0 chr1_random 3480008 3480138 -5675981 - FRAM SINE Alu -27 149 18 201 182 0 0 chr1_random 3480195 3480228 -5675891 + (TA)n Simple_repeat Simple_repeat 2 34 0 680 168 8 0 chr1_random 3480228 3480347 -5675772 - AluJb SINE Alu -192 120 1 378 310 78 85 chr1_random 3480496 3481028 -5675091 + L1MCa LINE L1 1003 1518 -4898 343 278 44 21 chr1_random 3481060 3481274 -5674845 + L1MCa LINE L1 1661 2149 -4278 388 279 125 14 chr1_random 3481281 3481504 -5674615 + L1M4 LINE L1 4177 4374 -1772 1632 116 79 0 chr1_random 3481504 3481579 -5674540 + AluSg1 SINE Alu 36 104 -205 258 32 0 0 chr1_random 3481579 3481610 -5674509 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1632 116 79 0 chr1_random 3481610 3481775 -5674344 + AluSg1 SINE Alu 104 295 -14 388 279 125 14 chr1_random 3481775 3481910 -5674209 + L1M4 LINE L1 4374 4575 -1571 530 303 36 41 chr1_random 3481955 3482176 -5673943 - MIR SINE MIR -42 220 1 183 204 0 0 chr1_random 3482246 3482295 -5673824 + (TATG)n Simple_repeat Simple_repeat 3 51 0 23 0 0 0 chr1_random 3482308 3482331 -5673788 + AT_rich Low_complexity Low_complexity 1 23 0 252 306 0 12 chr1_random 3482410 3482495 -5673624 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 1714 220 60 14 chr1_random 3484304 3484750 -5671369 - MLT1C LTR MaLR 0 467 1 3328 237 45 8 chr1_random 3485461 3486622 -5669497 - L1MB8 LINE L1 -15 6163 4967 1122 254 77 25 chr1_random 3486632 3487076 -5669043 + MLT1C LTR MaLR 1 467 0 2436 173 65 20 chr1_random 3487076 3487613 -5668506 + MLT1C-int LTR MaLR 1 561 -810 885 187 10 30 chr1_random 3487650 3487678 -5668441 - AluJb SINE Alu -2 310 283 2067 203 8 35 chr1_random 3487678 3488196 -5667923 - L1PB4 LINE L1 -1 7217 6714 885 187 10 30 chr1_random 3488196 3488365 -5667754 - AluJb SINE Alu -29 283 117 11968 227 33 16 chr1_random 3488366 3493514 -5662605 - L1PB4 LINE L1 -485 6733 1405 436 262 88 94 chr1_random 3493694 3494034 -5662085 - L1PB4 LINE L1 -5747 1462 1125 312 372 47 27 chr1_random 3494073 3494221 -5661898 - L1PB4 LINE L1 -6018 1191 1041 1396 287 45 18 chr1_random 3495240 3496038 -5660081 - L1MCa LINE L1 -3316 3110 2291 7364 34 14 0 chr1_random 3496052 3497644 -5658475 - L1PA4 LINE L1 -5 6150 4548 2242 110 0 3 chr1_random 3497872 3498182 -5657937 - AluY SINE Alu 0 311 3 881 312 34 31 chr1_random 3498183 3498798 -5657321 - L1MCa LINE L1 -4619 1809 1193 1080 250 103 45 chr1_random 3498814 3499515 -5656604 - L1M4c LINE L1 -4689 2270 1534 223 160 53 20 chr1_random 3499568 3499718 -5656401 + (TA)n Simple_repeat Simple_repeat 1 155 0 4543 282 38 25 chr1_random 3499718 3501149 -5654970 - L1M4c LINE L1 -5403 1456 8 607 175 91 42 chr1_random 3501318 3501461 -5654658 + MLT1B LTR MaLR 3 152 -222 312 188 0 0 chr1_random 3501465 3501529 -5654590 + CT-rich Low_complexity Low_complexity 2 65 0 706 225 6 39 chr1_random 3501538 3501720 -5654399 + MLT1B LTR MaLR 204 379 -11 1000 268 64 9 chr1_random 3502101 3502779 -5653340 + L1ME LINE L1 4856 5572 -594 455 256 56 10 chr1_random 3502826 3503021 -5653098 + L1ME3A LINE L1 5143 5346 -800 237 258 81 70 chr1_random 3503069 3503255 -5652864 + L1ME3A LINE L1 5419 5606 -558 1562 92 0 68 chr1_random 3503290 3503539 -5652580 + AluY SINE Alu 1 232 -79 1153 269 58 44 chr1_random 3503540 3503990 -5652129 + MLT1E1 LTR MaLR 199 654 0 372 302 35 50 chr1_random 3503992 3504194 -5651925 + L1ME3A LINE L1 5965 6163 -7 24 32 0 0 chr1_random 3505196 3505227 -5650892 + AT_rich Low_complexity Low_complexity 1 31 0 4723 188 36 9 chr1_random 3505268 3506257 -5649862 - L1MA7 LINE L1 -2 6289 5274 749 101 9 0 chr1_random 3506257 3506366 -5649753 - MSTB LTR MaLR 0 426 317 192 80 20 40 chr1_random 3506373 3506423 -5649696 + (TATAA)n Simple_repeat Simple_repeat 4 52 0 323 238 333 0 chr1_random 3506423 3506549 -5649570 - MER4-int LTR ERV1 -431 4505 4338 * 2213 214 86 84 chr1_random 3506543 3507679 -5648440 - MER4-int LTR ERV1 -1218 5094 3963 1982 131 24 0 chr1_random 3507679 3507970 -5648149 - AluSg SINE Alu -12 298 1 2213 214 86 84 chr1_random 3507970 3508548 -5647571 - MER4-int LTR ERV1 -2349 3963 2480 473 226 49 43 chr1_random 3508598 3508762 -5647357 - MER4-int LTR ERV1 -2868 3730 3566 225 0 0 0 chr1_random 3508762 3508787 -5647332 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 907 211 40 96 chr1_random 3509018 3509603 -5646516 - MER4-int LTR ERV1 -3071 3527 2911 1792 138 100 32 chr1_random 3509603 3509944 -5646175 + THE1B LTR MaLR 1 364 0 11451 95 5 0 chr1_random 3509944 3511516 -5644603 + THE1B-int LTR MaLR 1 1580 0 1835 136 68 37 chr1_random 3511516 3511869 -5644250 + THE1B LTR MaLR 1 364 0 907 211 40 96 chr1_random 3511869 3511925 -5644194 - MER4-int LTR ERV1 -3684 2914 1720 546 255 5 60 chr1_random 3511935 3512151 -5643968 - MER4-int LTR ERV1 -6371 1749 1546 1326 188 55 30 chr1_random 3512255 3512616 -5643503 - MER4-int LTR ERV1 -6578 1542 1173 328 258 65 16 chr1_random 3512865 3512989 -5643130 - L2 LINE L2 -2 3311 3182 31 76 0 0 chr1_random 3514027 3514093 -5642026 + AT_rich Low_complexity Low_complexity 1 66 0 229 259 162 49 chr1_random 3514336 3514521 -5641598 + MIR SINE MIR 50 255 -7 22 0 0 0 chr1_random 3514557 3514579 -5641540 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr1_random 3514746 3514789 -5641330 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr1_random 3515309 3515332 -5640787 + AT_rich Low_complexity Low_complexity 1 23 0 231 146 0 0 chr1_random 3515663 3515704 -5640415 + (CA)n Simple_repeat Simple_repeat 1 41 0 432 51 0 0 chr1_random 3516023 3516082 -5640037 + (TG)n Simple_repeat Simple_repeat 2 60 0 181 309 0 36 chr1_random 3516492 3516547 -5639572 + L2 LINE L2 3244 3296 -17 194 366 66 0 chr1_random 3518004 3518105 -5638014 + MIR SINE MIR 34 138 -102 21 0 0 0 chr1_random 3518836 3518857 -5637262 + AT_rich Low_complexity Low_complexity 1 21 0 431 264 88 29 chr1_random 3519360 3519599 -5636520 - MER112 DNA MER1_type -1 259 7 210 37 0 0 chr1_random 3520603 3520630 -5635489 + (GA)n Simple_repeat Simple_repeat 2 28 0 369 316 61 32 chr1_random 3520863 3521272 -5634847 + HAL1b LINE L1 102 1552 -829 999 267 24 18 chr1_random 3522300 3522633 -5633486 + L1ME1 LINE L1 5699 6033 -133 1439 179 11 115 chr1_random 3522643 3522799 -5633320 + MLT1B LTR MaLR 1 172 -218 2577 115 0 3 chr1_random 3522799 3523164 -5632955 - THE1B LTR MaLR 0 364 1 1439 179 11 115 chr1_random 3523164 3523391 -5632728 + MLT1B LTR MaLR 172 336 -54 189 0 0 0 chr1_random 3523391 3523412 -5632707 + (TTAGGG)n Simple_repeat Simple_repeat 4 24 0 1439 179 11 115 chr1_random 3523412 3523462 -5632657 + MLT1B LTR MaLR 336 390 0 341 236 67 0 chr1_random 3523462 3523551 -5632568 + L1ME1 LINE L1 6039 6133 -33 2215 237 49 69 chr1_random 3523636 3523975 -5632144 + L1ME1 LINE L1 5314 5658 -508 1674 194 61 6 chr1_random 3523975 3524321 -5631798 - MLT1A1 LTR MaLR 0 365 1 2215 237 49 69 chr1_random 3524321 3524841 -5631278 + L1ME1 LINE L1 5658 6156 -10 21 36 0 0 chr1_random 3525227 3525255 -5630864 + AT_rich Low_complexity Low_complexity 1 28 0 246 182 18 0 chr1_random 3525290 3525345 -5630774 + (TAAA)n Simple_repeat Simple_repeat 1 56 0 835 293 30 42 chr1_random 3526524 3526859 -5629260 + L1MC/D LINE L1 32 362 -6034 192 125 0 0 chr1_random 3526876 3526908 -5629211 + (GA)n Simple_repeat Simple_repeat 1 32 0 1763 269 58 31 chr1_random 3526910 3527713 -5628406 + L1MC/D LINE L1 347 1171 -5225 520 248 68 103 chr1_random 3527743 3528113 -5628006 + L1MC/D LINE L1 2546 2903 -3312 1956 119 3 29 chr1_random 3528113 3528424 -5627695 + AluSc SINE Alu 1 303 -6 520 248 68 103 chr1_random 3528424 3528449 -5627670 + L1MC/D LINE L1 2903 2927 -3288 866 226 101 20 chr1_random 3528603 3528909 -5627210 + L1MC/D LINE L1 4610 4940 -1275 1300 268 35 33 chr1_random 3528992 3529307 -5626812 + MLT2D LTR ERVL 48 366 -48 414 0 0 0 chr1_random 3529307 3529353 -5626766 + (CA)n Simple_repeat Simple_repeat 1 46 0 1300 268 35 33 chr1_random 3529353 3529403 -5626716 + MLT2D LTR ERVL 366 414 0 1362 243 74 29 chr1_random 3529409 3529830 -5626289 + L1MC/D LINE L1 4947 5348 -1279 2199 110 0 0 chr1_random 3529830 3530130 -5625989 + AluSc SINE Alu 1 300 -9 1362 243 74 29 chr1_random 3530130 3530597 -5625522 + L1MC/D LINE L1 5348 5884 -743 428 181 53 152 chr1_random 3530595 3530838 -5625281 - L1ME1 LINE L1 -137 6029 5811 * 365 209 0 47 chr1_random 3530851 3530999 -5625120 + CT-rich Low_complexity Low_complexity 3 143 0 236 312 50 20 chr1_random 3531376 3531578 -5624541 + L1M4 LINE L1 1442 1649 -4893 852 351 28 9 chr1_random 3531664 3532089 -5624030 - L1MEc LINE L1 -5920 476 44 578 257 18 29 chr1_random 3533035 3533206 -5622913 - MIR SINE MIR -7 255 87 441 292 17 0 chr1_random 3533775 3533895 -5622224 + L2 LINE L2 3192 3313 0 32 26 0 0 chr1_random 3534871 3534910 -5621209 + AT_rich Low_complexity Low_complexity 1 39 0 2358 53 0 0 chr1_random 3537526 3537834 -5618285 + AluY SINE Alu 1 308 0 355 229 26 21 chr1_random 3537836 3537987 -5618132 + MER41B LTR ERV1 237 425 -210 354 215 0 0 chr1_random 3538662 3538741 -5617378 + (TA)n Simple_repeat Simple_repeat 2 80 0 330 226 0 94 chr1_random 3538741 3538847 -5617272 - L1MC4 LINE L1 -1333 6709 6614 21 57 0 0 chr1_random 3538872 3538907 -5617212 + AT_rich Low_complexity Low_complexity 1 35 0 239 324 19 0 chr1_random 3538911 3539019 -5617100 + MER103 DNA DNA 14 123 -43 27 49 0 0 chr1_random 3539050 3539091 -5617028 + AT_rich Low_complexity Low_complexity 1 41 0 1503 315 56 55 chr1_random 3539994 3540900 -5615219 + L2 LINE L2 1386 2292 -1022 1641 231 52 51 chr1_random 3540915 3541588 -5614531 + L1ME LINE L1 5115 5788 -378 271 298 180 45 chr1_random 3541591 3541769 -5614350 + L2 LINE L2 2420 2621 -693 405 233 11 0 chr1_random 3541773 3541863 -5614256 - Zaphod DNA AcHobo -4 4027 3937 696 206 46 23 chr1_random 3542106 3542281 -5613838 - MER45B DNA AcHobo 0 1040 862 704 294 64 10 chr1_random 3542341 3542545 -5613574 - MER45B DNA AcHobo -825 215 1 557 345 43 20 chr1_random 3542758 3542793 -5613326 + L2 LINE L2 2619 2652 -662 2181 136 45 14 chr1_random 3542793 3543146 -5612973 + THE1B LTR MaLR 1 364 0 557 345 43 20 chr1_random 3543146 3543411 -5612708 + L2 LINE L2 2652 2926 -388 1762 218 59 21 chr1_random 3545182 3545523 -5610596 - LTR54B LTR ERV1 -2 496 130 4839 105 1 3 chr1_random 3545523 3546209 -5609910 - L1PA11 LINE L1 -1 6173 5489 1762 218 59 21 chr1_random 3546209 3546345 -5609774 - LTR54B LTR ERV1 -368 130 1 481 223 0 10 chr1_random 3546345 3546448 -5609671 - MER57-int LTR ERV1 -393 7144 7043 865 240 143 23 chr1_random 3546475 3546733 -5609386 - MLT1E2 LTR MaLR -337 289 1 2303 71 27 0 chr1_random 3547164 3547459 -5608660 - AluY SINE Alu -8 303 1 280 291 100 36 chr1_random 3547463 3547573 -5608546 - MER20B DNA MER1_type -604 179 63 1804 138 31 7 chr1_random 3547611 3547900 -5608219 + MSTB LTR MaLR 1 296 -130 3856 151 87 3 chr1_random 3549252 3549927 -5606192 - MER44D DNA MER2_type 0 605 2 2370 183 148 4 chr1_random 3549934 3550460 -5605659 + MER6A DNA MER2_type 4 605 0 23 33 0 0 chr1_random 3550638 3550668 -5605451 + AT_rich Low_complexity Low_complexity 1 30 0 2556 105 3 0 chr1_random 3550954 3551306 -5604813 - THE1A LTR MaLR -2 353 1 277 178 0 0 chr1_random 3551810 3551855 -5604264 - MER94 DNA DNA -88 46 2 23 54 0 0 chr1_random 3552054 3552091 -5604028 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr1_random 3553081 3553102 -5603017 + AT_rich Low_complexity Low_complexity 1 21 0 1740 155 12 111 chr1_random 3553331 3553737 -5602382 + MER47A DNA MER2_type 1 366 0 239 336 88 0 chr1_random 3553772 3553885 -5602234 - MIR3 SINE MIR -30 178 56 191 269 223 15 chr1_random 3553899 3554029 -5602090 - MIR SINE MIR -10 252 96 3999 106 78 7 chr1_random 3554125 3554741 -5601378 + PABL_A LTR ERV1 1 660 0 186 43 0 0 chr1_random 3555304 3555327 -5600792 + (TTG)n Simple_repeat Simple_repeat 2 24 0 772 242 22 16 chr1_random 3555356 3555538 -5600581 - MER5A DNA MER1_type 0 189 7 1214 220 71 24 chr1_random 3555862 3556158 -5599961 - MLT1A2 LTR MaLR -64 310 1 1251 193 77 7 chr1_random 3556158 3556443 -5599676 - L1MC3 LINE L1 -82 7703 7399 375 155 24 24 chr1_random 3556444 3556528 -5599591 - L1M4 LINE L1 -858 5288 5205 224 59 29 0 chr1_random 3556529 3556563 -5599556 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 794 199 7 0 chr1_random 3556563 3556709 -5599410 - FAM SINE Alu -29 156 10 399 283 29 24 chr1_random 3556712 3556917 -5599202 - L1M4 LINE L1 -971 5175 4970 652 168 10 22 chr1_random 3556952 3557262 -5598857 + CT-rich Low_complexity Low_complexity 1 306 0 2686 269 67 25 chr1_random 3557262 3558359 -5597760 - L1M4 LINE L1 -1199 4947 3805 25 31 0 0 chr1_random 3558779 3558811 -5597308 + AT_rich Low_complexity Low_complexity 1 32 0 2165 113 0 0 chr1_random 3559215 3559507 -5596612 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr1_random 3559507 3559537 -5596582 + AT_rich Low_complexity Low_complexity 1 30 0 664 301 29 0 chr1_random 3559741 3559914 -5596205 + L2 LINE L2 2626 2803 -511 485 211 55 0 chr1_random 3559914 3560023 -5596096 - MLT1A1 LTR MaLR 0 374 260 1481 154 0 0 chr1_random 3560027 3560248 -5595871 + AluSx SINE Alu 5 225 -87 315 0 0 0 chr1_random 3560264 3560299 -5595820 + (A)n Simple_repeat Simple_repeat 1 35 0 690 196 114 78 chr1_random 3560309 3560554 -5595565 - MLT1A1 LTR MaLR -111 254 1 626 301 158 25 chr1_random 3560561 3561010 -5595109 + L2 LINE L2 2805 3313 0 190 152 15 0 chr1_random 3563118 3563155 -5592964 - MIR SINE MIR -141 121 85 290 341 79 16 chr1_random 3563888 3564014 -5592105 - L2 LINE L2 -3 3269 3136 185 248 124 38 chr1_random 3564023 3564128 -5591991 - L2 LINE L2 -4 3309 3196 1549 166 0 49 chr1_random 3564135 3564443 -5591676 - AluJo SINE Alu -19 293 1 1358 246 53 18 chr1_random 3565703 3566216 -5589903 - L1ME2 LINE L1 -330 5834 5304 21 0 0 0 chr1_random 3567125 3567146 -5588973 + AT_rich Low_complexity Low_complexity 1 21 0 193 326 163 0 chr1_random 3567171 3567257 -5588862 - MIR SINE MIR -79 183 84 2265 95 7 0 chr1_random 3567799 3568095 -5588024 - AluSp SINE Alu -15 298 1 432 320 13 7 chr1_random 3568288 3568438 -5587681 + LTR33 LTR ERVL 69 219 -302 287 208 54 8 chr1_random 3569044 3569174 -5586945 + (TA)n Simple_repeat Simple_repeat 2 137 0 249 309 41 21 chr1_random 3569673 3569770 -5586349 - HAL1 LINE L1 -589 1918 1820 1136 222 59 3 chr1_random 3569885 3570191 -5585928 + L1ME1 LINE L1 5556 5878 -288 338 313 22 30 chr1_random 3570611 3570745 -5585374 - MIR SINE MIR -29 233 101 21 0 0 0 chr1_random 3571643 3571664 -5584455 + AT_rich Low_complexity Low_complexity 1 21 0 1964 149 7 0 chr1_random 3572260 3572556 -5583563 - AluSx SINE Alu -14 298 1 2721 175 14 4 chr1_random 3572595 3573087 -5583032 + LOR1a LTR ERV1 1 497 0 221 371 0 0 chr1_random 3573110 3573172 -5582947 + MER5A DNA MER1_type 128 189 0 7778 85 8 9 chr1_random 3573810 3574868 -5581251 + MER11C LTR ERVK 1 1057 -14 4100 204 42 71 chr1_random 3575055 3576178 -5579941 + L1MC3 LINE L1 6695 7784 -1 1321 201 11 21 chr1_random 3576920 3577199 -5578920 + AluJo SINE Alu 13 288 -24 23 0 0 0 chr1_random 3578800 3578823 -5577296 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr1_random 3578847 3578868 -5577251 + AT_rich Low_complexity Low_complexity 1 21 0 218 274 0 36 chr1_random 3579734 3579818 -5576301 - MIR SINE MIR -109 153 73 1200 68 0 19 chr1_random 3579831 3579993 -5576126 + AluSg/x SINE Alu 154 312 0 1859 160 10 0 chr1_random 3580525 3580819 -5575300 - AluJb SINE Alu -15 297 1 2410 223 14 21 chr1_random 3581246 3581757 -5574362 + MLT2B3 LTR ERVL 1 507 -47 511 210 140 6 chr1_random 3581857 3582014 -5574105 - MER96B DNA MER1_type? -239 178 1 305 309 0 0 chr1_random 3582018 3582102 -5574017 - MIR SINE MIR -110 152 69 212 394 122 18 chr1_random 3583029 3583250 -5572869 + L2 LINE L2 2838 3081 -191 511 345 18 22 chr1_random 3583591 3583820 -5572299 + MLT1J LTR MaLR 85 312 -199 601 237 0 0 chr1_random 3584044 3584175 -5571944 + L1PB4 LINE L1 6026 6156 0 965 181 78 92 chr1_random 3584354 3584399 -5571720 + MSTA LTR MaLR 152 196 -232 2093 137 0 3 chr1_random 3584399 3584706 -5571413 + AluSq SINE Alu 1 306 -7 965 181 78 92 chr1_random 3584706 3584736 -5571383 + MSTA LTR MaLR 196 225 -203 204 40 0 0 chr1_random 3584736 3584761 -5571358 + (TC)n Simple_repeat Simple_repeat 1 25 0 965 181 78 92 chr1_random 3584761 3584965 -5571154 + MSTA LTR MaLR 225 428 0 4046 172 19 5 chr1_random 3584965 3585708 -5570411 - L1MC1 LINE L1 -9 6324 5572 1422 202 53 43 chr1_random 3585784 3585973 -5570146 - L1MC1 LINE L1 -759 5574 5388 2308 99 0 0 chr1_random 3585973 3586277 -5569842 - AluY SINE Alu -7 304 1 1422 202 53 43 chr1_random 3586277 3586601 -5569518 - L1MC1 LINE L1 -945 5388 4877 280 319 31 25 chr1_random 3586726 3586889 -5569230 + L1ME1 LINE L1 5948 6111 -55 21 36 0 0 chr1_random 3588807 3588835 -5567284 + AT_rich Low_complexity Low_complexity 1 28 0 67 0 0 0 chr1_random 3589085 3589152 -5566967 + AT_rich Low_complexity Low_complexity 1 67 0 553 287 84 39 chr1_random 3589611 3589921 -5566198 + L1ME2 LINE L1 293 616 -6030 507 315 25 22 chr1_random 3590047 3590323 -5565796 + L1ME2 LINE L1 820 1096 -5446 2684 129 22 9 chr1_random 3590357 3590806 -5565313 + L1PA15 LINE L1 5708 6162 -3 436 244 111 60 chr1_random 3591115 3591582 -5564537 + L1ME4a LINE L1 5614 6104 -17 282 281 91 29 chr1_random 3591871 3592145 -5563974 + L1ME2 LINE L1 2432 2722 -4103 870 288 47 80 chr1_random 3592208 3592464 -5563655 + L1ME2 LINE L1 2799 3062 -3582 2104 108 20 3 chr1_random 3592464 3592760 -5563359 - AluSq SINE Alu -12 301 1 870 288 47 80 chr1_random 3592760 3593290 -5562829 + L1ME2 LINE L1 3062 3559 -3085 * 935 283 92 2 chr1_random 3593283 3593683 -5562436 + L1ME2 LINE L1 4980 5415 -1229 1267 256 74 15 chr1_random 3593687 3594078 -5562041 + LTR52 LTR ERVL 1 414 -7 307 287 44 22 chr1_random 3594080 3594216 -5561903 + L1ME2 LINE L1 5413 5551 -1093 397 221 194 42 chr1_random 3594516 3594733 -5561386 + L1ME2 LINE L1 6413 6662 0 231 164 15 75 chr1_random 3594735 3594749 -5561370 + A-rich Low_complexity Low_complexity 2 15 -49 1942 148 20 0 chr1_random 3594749 3595053 -5561066 + AluSx SINE Alu 1 310 -2 231 164 15 75 chr1_random 3595053 3595105 -5561014 + A-rich Low_complexity Low_complexity 15 64 0 598 264 60 6 chr1_random 3595661 3595828 -5560291 + L1ME1 LINE L1 5953 6128 -38 906 241 46 58 chr1_random 3596235 3597346 -5558773 - L1ME LINE L1 -3335 2880 1641 599 89 0 0 chr1_random 3597624 3597714 -5558405 - L1P LINE L1 -2230 3916 3827 * 3187 51 0 0 chr1_random 3597699 3598093 -5558026 + L1P LINE L1 3438 3831 -2315 761 283 32 77 chr1_random 3598091 3598660 -5557459 - L1ME LINE L1 -5143 1062 520 * 347 309 82 92 chr1_random 3598660 3598954 -5557165 - L1ME LINE L1 -5589 616 326 21 0 0 0 chr1_random 3600030 3600051 -5556068 + AT_rich Low_complexity Low_complexity 1 21 0 1224 230 71 9 chr1_random 3600555 3600914 -5555205 - L1ME LINE L1 -562 5604 5233 10300 112 31 11 chr1_random 3600919 3602451 -5553668 + THE1B-int LTR MaLR 19 1580 0 2121 118 27 21 chr1_random 3602451 3602789 -5553330 + THE1B LTR MaLR 1 340 -24 974 310 12 30 chr1_random 3602870 3603367 -5552752 - L1ME LINE L1 -960 5186 4699 25 31 0 0 chr1_random 3603468 3603500 -5552619 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr1_random 3604100 3604122 -5551997 + AT_rich Low_complexity Low_complexity 1 22 0 1008 244 113 54 chr1_random 3604155 3604481 -5551638 + MLT2B2 LTR ERVL 103 457 -58 429 43 29 14 chr1_random 3604481 3604550 -5551569 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 1008 244 113 54 chr1_random 3604550 3604613 -5551506 + MLT2B2 LTR ERVL 457 515 0 252 268 0 0 chr1_random 3604812 3604883 -5551236 + L1ME LINE L1 5725 5795 -326 1345 276 85 62 chr1_random 3604889 3605440 -5550679 - MLT2E LTR ERVL -46 582 19 245 341 71 98 chr1_random 3605515 3605770 -5550349 - L2 LINE L2 -5 3267 3020 232 264 69 42 chr1_random 3606809 3606881 -5549238 + L2 LINE L2 3195 3268 -4 192 329 98 37 chr1_random 3608270 3608434 -5547685 - L2 LINE L2 -1 3312 3139 317 304 172 34 chr1_random 3608480 3608684 -5547435 + MIR SINE MIR 31 262 0 245 313 48 48 chr1_random 3608906 3608977 -5547142 - L1ME LINE L1 -236 5885 5815 1947 156 105 10 chr1_random 3608977 3609368 -5546751 - MSTA LTR MaLR 0 428 1 8743 155 16 36 chr1_random 3609368 3610979 -5545140 - MSTA-int LTR MaLR 0 1580 3 1822 186 99 10 chr1_random 3610981 3611374 -5544745 - MSTA LTR MaLR 0 428 1 245 313 48 48 chr1_random 3611374 3611589 -5544530 - L1ME LINE L1 -305 5816 5595 7359 26 9 24 chr1_random 3611666 3612736 -5543383 + L1PA3 LINE L1 5097 6152 -3 37 52 0 0 chr1_random 3612736 3612794 -5543325 + AT_rich Low_complexity Low_complexity 1 58 0 329 295 54 23 chr1_random 3613562 3613691 -5542428 - MIR SINE MIR -18 244 112 1902 199 8 22 chr1_random 3615294 3615696 -5540423 + MSTD LTR MaLR 1 396 0 481 369 29 8 chr1_random 3616349 3616593 -5539526 - MIR SINE MIR -10 252 4 260 296 10 61 chr1_random 3616640 3616738 -5539381 + L2 LINE L2 2564 2656 -658 380 279 66 105 chr1_random 3616777 3617110 -5539009 + MLT1J LTR MaLR 128 447 -64 620 312 121 44 chr1_random 3617173 3617778 -5538341 + L2 LINE L2 2658 3305 -8 204 125 0 0 chr1_random 3617938 3617970 -5538149 + (CATA)n Simple_repeat Simple_repeat 2 33 0 232 264 69 42 chr1_random 3618819 3618891 -5537228 + L2 LINE L2 3195 3268 -4 1662 209 88 12 chr1_random 3619957 3620388 -5535731 + MLT1C LTR MaLR 1 464 -3 23 33 0 0 chr1_random 3620621 3620651 -5535468 + AT_rich Low_complexity Low_complexity 1 30 0 192 417 66 20 chr1_random 3621173 3621324 -5534795 - L2 LINE L2 -2 3270 3113 277 249 82 3 chr1_random 3621487 3621606 -5534513 + MLT1J2 LTR MaLR 72 198 -248 336 193 11 45 chr1_random 3621728 3621816 -5534303 + MLT1J2 LTR MaLR 366 450 0 528 294 32 50 chr1_random 3622936 3623116 -5533003 - MIR SINE MIR -3 259 82 1929 183 36 32 chr1_random 3623116 3623527 -5532592 - MLT2D LTR ERVL 0 414 2 528 294 32 50 chr1_random 3623527 3623567 -5532552 - MIR SINE MIR -180 82 43 253 234 62 0 chr1_random 3623767 3623831 -5532288 + L1MC1 LINE L1 6061 6128 -205 469 368 44 8 chr1_random 3624724 3624974 -5531145 - MIR SINE MIR -3 259 1 222 37 0 0 chr1_random 3625030 3625057 -5531062 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 391 232 0 0 chr1_random 3625079 3625148 -5530971 - AluJ/FRAM SINE Alu -16 286 218 337 341 52 23 chr1_random 3625182 3625355 -5530764 - MIR SINE MIR -36 226 49 248 412 6 0 chr1_random 3625419 3625584 -5530535 + L2 LINE L2 2446 2611 -703 820 314 101 38 chr1_random 3625733 3626381 -5529738 - L1M3de LINE L1 -5580 1073 564 21 71 0 0 chr1_random 3626450 3626492 -5529627 + AT_rich Low_complexity Low_complexity 1 42 0 4724 166 39 8 chr1_random 3626824 3627700 -5528419 - MER4D LTR ERV1 0 903 1 366 259 27 18 chr1_random 3628924 3629036 -5527083 - ORSL DNA AcHobo -161 114 2 245 341 71 98 chr1_random 3629275 3629530 -5526589 + L2 LINE L2 3020 3267 -5 1332 278 85 62 chr1_random 3629605 3630156 -5525963 + MLT2E LTR ERVL 19 582 -46 252 268 0 0 chr1_random 3630162 3630233 -5525886 - L1ME LINE L1 -326 5795 5725 998 239 121 62 chr1_random 3630432 3630495 -5525624 - MLT2B2 LTR ERVL 0 515 457 408 58 29 14 chr1_random 3630495 3630564 -5525555 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 998 239 121 62 chr1_random 3630564 3630890 -5525229 - MLT2B2 LTR ERVL -58 457 103 22 0 0 0 chr1_random 3630923 3630945 -5525174 + AT_rich Low_complexity Low_complexity 1 22 0 40 96 0 6 chr1_random 3632313 3632351 -5523768 + AT_rich Low_complexity Low_complexity 1 38 -117 7564 28 0 0 chr1_random 3632351 3633751 -5522368 + L1PA4 LINE L1 4753 6152 -3 40 96 0 6 chr1_random 3633751 3633868 -5522251 + AT_rich Low_complexity Low_complexity 38 155 0 247 322 122 22 chr1_random 3634306 3634396 -5521723 + MIR SINE MIR 16 114 -94 372 291 9 18 chr1_random 3634518 3634628 -5521491 - MIR SINE MIR -102 160 52 1707 129 65 28 chr1_random 3634667 3634992 -5521127 - THE1C LTR MaLR 0 375 39 516 277 75 83 chr1_random 3635088 3635439 -5520680 - MLT1G3 LTR MaLR -124 471 33 307 353 30 60 chr1_random 3635727 3635993 -5520126 + MIR SINE MIR 5 262 0 279 20 20 40 chr1_random 3636441 3636491 -5519628 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 225 287 124 39 chr1_random 3638526 3638655 -5517464 - MIR SINE MIR -18 244 105 344 310 81 62 chr1_random 3638822 3639228 -5516891 + L1M4 LINE L1 16 429 -6113 1094 272 99 5 chr1_random 3639233 3639648 -5516471 + L1M4 LINE L1 1638 2091 -4555 3291 201 42 24 chr1_random 3639825 3640634 -5515485 + L1MB7 LINE L1 5350 6173 -11 204 179 0 0 chr1_random 3641269 3641308 -5514811 + (TATG)n Simple_repeat Simple_repeat 2 40 0 237 348 59 0 chr1_random 3642291 3642409 -5513710 - L2 LINE L2 0 3313 3189 1830 138 10 3 chr1_random 3642643 3642934 -5513185 - AluSx SINE Alu -19 293 1 279 348 136 32 chr1_random 3643083 3643525 -5512594 - L2 LINE L2 -995 2319 1832 257 286 71 45 chr1_random 3643523 3643635 -5512484 + L2 LINE L2 2681 2795 -519 * 520 336 58 17 chr1_random 3643989 3644230 -5511889 + L2 LINE L2 2687 2937 -377 218 324 9 9 chr1_random 3644518 3644623 -5511496 - L2 LINE L2 -1607 1707 1603 189 310 0 56 chr1_random 3645080 3645151 -5510968 - L2 LINE L2 -4 3268 3202 231 405 8 16 chr1_random 3645801 3645927 -5510192 + MIR SINE MIR 29 153 -109 180 377 26 26 chr1_random 3646613 3646690 -5509429 + MIR SINE MIR 37 113 -95 929 200 72 15 chr1_random 3647046 3647158 -5508961 + AluJo SINE Alu 6 135 -177 216 0 0 0 chr1_random 3647158 3647182 -5508937 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 929 200 72 15 chr1_random 3647182 3647264 -5508855 + AluJo SINE Alu 135 211 -101 239 265 24 36 chr1_random 3647688 3647771 -5508348 - L1MD1 LINE L1 -18 6224 6143 1031 137 11 17 chr1_random 3648003 3648178 -5507941 - AluSg/x SINE Alu -14 298 125 19929 73 6 2 chr1_random 3648189 3651684 -5504435 - L1PA6 LINE L1 -9 6145 2647 15444 126 16 18 chr1_random 3651686 3654179 -5501940 - L1PA6 LINE L1 -3647 2499 11 329 311 84 18 chr1_random 3654373 3654540 -5501579 - L1MDa LINE L1 -842 1648 1389 262 237 21 0 chr1_random 3654631 3654728 -5501391 + CT-rich Low_complexity Low_complexity 2 100 0 358 261 67 123 chr1_random 3654751 3655172 -5500947 - L1MDa LINE L1 -4878 1241 845 845 202 118 81 chr1_random 3655174 3655580 -5500539 - L1ME2 LINE L1 -9 6155 5735 773 288 59 30 chr1_random 3655762 3656099 -5500020 + LTR40a LTR ERVL 123 469 -50 904 273 86 55 chr1_random 3656102 3656557 -5499562 - L1MC4 LINE L1 -1115 6927 6459 181 49 0 98 chr1_random 3656849 3656890 -5499229 + (TTTTTA)n Simple_repeat Simple_repeat 5 41 0 2495 56 0 0 chr1_random 3657265 3657567 -5498552 - AluY SINE Alu -9 302 1 258 260 110 20 chr1_random 3658955 3659101 -5497018 - MIR SINE MIR -13 249 91 459 303 58 8 chr1_random 3659236 3659497 -5496622 + L1ME4a LINE L1 5513 5786 -335 292 275 33 0 chr1_random 3659933 3660053 -5496066 + L1ME4a LINE L1 5997 6120 -1 1945 226 75 4 chr1_random 3662581 3663033 -5493086 - MLT1D LTR MaLR 0 505 22 183 327 56 51 chr1_random 3663595 3663809 -5492310 + L2 LINE L2 2848 3062 -210 411 294 33 39 chr1_random 3664060 3664240 -5491879 - MER5A DNA MER1_type 0 189 11 282 29 0 0 chr1_random 3664893 3664928 -5491191 + (CA)n Simple_repeat Simple_repeat 2 36 0 665 291 30 10 chr1_random 3666141 3666344 -5489775 + L1MD2 LINE L1 36 242 -6154 1783 281 70 28 chr1_random 3666347 3666718 -5489401 + L1MD2 LINE L1 286 640 -5756 1529 245 69 66 chr1_random 3666718 3667370 -5488749 + MLT1E1 LTR MaLR 1 654 0 1783 281 70 28 chr1_random 3667370 3667782 -5488337 + L1MD2 LINE L1 640 1102 -5294 1820 277 49 47 chr1_random 3667784 3668923 -5487196 + L1MD2 LINE L1 1205 2346 -4050 349 196 11 11 chr1_random 3669026 3669118 -5487001 + (TA)n Simple_repeat Simple_repeat 2 93 0 3029 248 38 42 chr1_random 3669227 3670445 -5485674 + L1MD2 LINE L1 2374 3586 -2629 2022 271 41 27 chr1_random 3670441 3670850 -5485269 + L1MD2 LINE L1 4534 4936 -1299 * 953 261 9 0 chr1_random 3670850 3671072 -5485047 - MER58A DNA MER1_type 0 224 1 2022 271 41 27 chr1_random 3671072 3671741 -5484378 + L1MD2 LINE L1 4936 5618 -617 1721 168 0 14 chr1_random 3671758 3672064 -5484055 + AluJb SINE Alu 3 304 0 272 294 38 78 chr1_random 3672098 3672329 -5483790 + L1MA10 LINE L1 5945 6326 -8 24 0 0 0 chr1_random 3672596 3672620 -5483499 + AT_rich Low_complexity Low_complexity 1 24 0 2505 245 50 35 chr1_random 3672914 3673676 -5482443 + L1MD2 LINE L1 5652 6424 -4 221 330 40 20 chr1_random 3674296 3674396 -5481723 + L2 LINE L2 2435 2536 -778 28 0 0 0 chr1_random 3675039 3675067 -5481052 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr1_random 3675714 3675739 -5480380 + AT_rich Low_complexity Low_complexity 1 25 0 30 59 0 0 chr1_random 3676745 3676796 -5479323 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr1_random 3677687 3677718 -5478401 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr1_random 3677737 3677766 -5478353 + AT_rich Low_complexity Low_complexity 1 29 0 410 290 53 8 chr1_random 3678224 3678355 -5477764 + MIR SINE MIR 22 158 -104 186 296 62 0 chr1_random 3678412 3678493 -5477626 + MIR SINE MIR 145 230 -32 22 0 0 0 chr1_random 3678691 3678713 -5477406 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1_random 3680244 3680277 -5475842 + AT_rich Low_complexity Low_complexity 1 33 0 21 71 0 0 chr1_random 3680351 3680393 -5475726 + AT_rich Low_complexity Low_complexity 1 42 0 555 303 60 39 chr1_random 3680411 3680797 -5475322 + L1ME3A LINE L1 5471 5864 -306 24 0 0 0 chr1_random 3680804 3680828 -5475291 + AT_rich Low_complexity Low_complexity 1 24 0 283 337 60 32 chr1_random 3680910 3681192 -5474927 + L1MEc LINE L1 521 810 -6015 1311 239 60 56 chr1_random 3681217 3681681 -5474438 + MER31B LTR ERV1 1 466 0 533 269 63 71 chr1_random 3682139 3682809 -5473310 + L1MEc LINE L1 1061 1659 -4883 448 182 148 0 chr1_random 3683397 3683485 -5472634 + MER58A DNA MER1_type 12 112 0 450 209 33 0 chr1_random 3683952 3684043 -5472076 + MER58A DNA MER1_type 131 224 0 283 234 16 0 chr1_random 3686096 3686220 -5469899 + (CCA)n Simple_repeat Simple_repeat 3 128 0 29 60 0 0 chr1_random 3686534 3686584 -5469535 + AT_rich Low_complexity Low_complexity 1 50 0 261 0 0 0 chr1_random 3687176 3687205 -5468914 + (TG)n Simple_repeat Simple_repeat 2 30 0 1295 244 24 6 chr1_random 3687205 3687545 -5468574 + L1ME1 LINE L1 5607 5952 -214 21 0 0 0 chr1_random 3687558 3687579 -5468540 + AT_rich Low_complexity Low_complexity 1 21 0 3021 205 39 38 chr1_random 3687579 3688394 -5467725 - L1MA9 LINE L1 -38 6274 5459 3235 149 106 29 chr1_random 3688557 3689286 -5466833 + LTR1 LTR ERV1 1 785 0 1069 199 43 121 chr1_random 3689428 3689851 -5466268 + MLT1B LTR MaLR 1 390 0 472 231 42 157 chr1_random 3690643 3690859 -5465260 - MIR SINE MIR -2 260 70 286 394 61 0 chr1_random 3691792 3691972 -5464147 - L3 LINE CR1 -26 1551 1361 408 253 64 38 chr1_random 3692971 3693418 -5462701 - L1MCc LINE L1 -4973 1450 1272 22 0 0 0 chr1_random 3693649 3693671 -5462448 + AT_rich Low_complexity Low_complexity 1 22 0 15830 220 24 12 chr1_random 3693724 3698014 -5458105 - L1PA15 LINE L1 -13 6803 2413 2199 125 0 3 chr1_random 3698014 3698319 -5457800 + AluSq SINE Alu 3 306 -7 15830 220 24 12 chr1_random 3698319 3699736 -5456383 - L1PA15 LINE L1 -4403 2413 1014 2363 81 0 0 chr1_random 3699736 3700033 -5456086 - AluY SINE Alu -12 299 3 534 277 106 28 chr1_random 3700157 3700514 -5455605 - L1M4 LINE L1 -2185 3961 3577 22 35 0 0 chr1_random 3700709 3700738 -5455381 + AT_rich Low_complexity Low_complexity 1 29 0 411 172 20 91 chr1_random 3701119 3701218 -5454901 + MER21B LTR ERV1 13 104 -759 2436 248 96 15 chr1_random 3701218 3701944 -5454175 + MER21B LTR ERV1 19 803 -60 1705 166 3 10 chr1_random 3702077 3702366 -5453753 + AluSx SINE Alu 1 287 -25 351 351 50 37 chr1_random 3702837 3703079 -5453040 - L1MEc LINE L1 -4761 1635 1391 2302 77 7 7 chr1_random 3703797 3704107 -5452012 - AluY SINE Alu -1 310 1 269 304 23 53 chr1_random 3707784 3708050 -5448069 + HAL1b LINE L1 64 321 -1027 35 54 0 0 chr1_random 3708385 3708441 -5447678 + AT_rich Low_complexity Low_complexity 1 56 0 204 196 36 0 chr1_random 3708787 3708843 -5447276 + (TA)n Simple_repeat Simple_repeat 1 58 0 1001 264 97 35 chr1_random 3708974 3709481 -5446638 + L1MC4a LINE L1 6052 6589 -1219 852 248 23 4 chr1_random 3709538 3709804 -5446315 + L1MC4 LINE L1 7092 7362 -680 206 360 65 7 chr1_random 3709935 3710074 -5446045 - L2 LINE L2 -1475 1839 1693 258 32 0 0 chr1_random 3710088 3710119 -5446000 + (TA)n Simple_repeat Simple_repeat 2 32 0 314 222 56 0 chr1_random 3710138 3710210 -5445909 + MER63 DNA MER1_type 676 751 -85 1812 154 50 39 chr1_random 3710938 3711296 -5444823 - THE1B LTR MaLR -2 362 1 10452 117 30 5 chr1_random 3711301 3712834 -5443285 - THE1B-int LTR MaLR -6 1574 3 1624 167 44 44 chr1_random 3712839 3713199 -5442920 - THE1B LTR MaLR -4 360 1 246 172 54 21 chr1_random 3713678 3713771 -5442348 + (TA)n Simple_repeat Simple_repeat 1 96 0 814 297 86 43 chr1_random 3713776 3714331 -5441788 + L2 LINE L2 2692 3313 0 297 329 206 0 chr1_random 3714643 3714813 -5441306 - MIR SINE MIR -38 224 20 26 0 0 0 chr1_random 3714813 3714839 -5441280 + AT_rich Low_complexity Low_complexity 1 26 0 367 179 26 0 chr1_random 3714896 3714974 -5441145 - L1MD2 LINE L1 -86 6273 6194 1862 193 43 28 chr1_random 3714983 3715523 -5440596 + MLT2A2 LTR ERVL 1 554 0 533 256 160 4 chr1_random 3715565 3715803 -5440316 - L1MD2 LINE L1 -231 6128 5854 2516 201 163 53 chr1_random 3715805 3716054 -5440065 - L1MDa LINE L1 -3890 2650 2430 1824 196 2 42 chr1_random 3716054 3716507 -5439612 - L1MA10 LINE L1 0 6334 5900 2516 201 163 53 chr1_random 3716507 3717356 -5438763 - L1MDa LINE L1 -4110 2430 1431 1778 287 67 23 chr1_random 3717358 3718144 -5437975 - L1MDa LINE L1 -5395 1145 171 285 349 24 0 chr1_random 3718266 3718392 -5437727 + MIR SINE MIR 130 258 -4 242 293 93 20 chr1_random 3718501 3718651 -5437468 - MIR SINE MIR 0 262 102 25 0 0 0 chr1_random 3718992 3719017 -5437102 + AT_rich Low_complexity Low_complexity 1 25 0 2520 98 8 39 chr1_random 3719293 3719680 -5436439 + THE1C LTR MaLR 1 375 0 10122 125 31 8 chr1_random 3719680 3721211 -5434908 + THE1C-int LTR MaLR 1 1567 -13 2469 117 8 11 chr1_random 3721213 3721589 -5434530 + THE1C LTR MaLR 1 375 0 667 265 44 0 chr1_random 3721712 3721893 -5434226 + MER5A DNA MER1_type 1 189 0 216 298 8 99 chr1_random 3722515 3722636 -5433483 - L2 LINE L2 -212 3060 2951 2966 145 22 0 chr1_random 3723127 3723632 -5432487 - L1MA4 LINE L1 -348 5952 5437 2826 183 10 20 chr1_random 3723634 3724337 -5431782 + L1MA4 LINE L1 4733 5430 -743 6954 69 0 1 chr1_random 3724434 3725463 -5430656 + L1PA7 LINE L1 5121 6148 -6 397 308 71 66 chr1_random 3726081 3726519 -5429600 + L1MC3 LINE L1 16 455 -5968 1044 266 65 40 chr1_random 3726808 3727621 -5428498 + L1MC3 LINE L1 947 1744 -4849 712 254 20 134 chr1_random 3727630 3728390 -5427729 + L1MC3 LINE L1 3956 4628 -2313 1325 228 81 9 chr1_random 3728390 3728562 -5427557 + MLT1B LTR MaLR 10 168 -222 180 0 0 0 chr1_random 3728562 3728582 -5427537 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 237 33 0 0 chr1_random 3728581 3728611 -5427508 + (GA)n Simple_repeat Simple_repeat 2 31 0 1325 228 81 9 chr1_random 3728582 3728785 -5427334 + MLT1B LTR MaLR 168 381 -9 3053 249 70 69 chr1_random 3728834 3729563 -5426556 + L1MC3 LINE L1 4687 5414 -1527 571 152 0 0 chr1_random 3729563 3729655 -5426464 + AluSg/x SINE Alu 156 247 -65 3053 249 70 69 chr1_random 3729655 3731212 -5424907 + L1MC3 LINE L1 5414 6198 -743 413 241 0 24 chr1_random 3731226 3731309 -5424810 + MER7A DNA MER2_type 1 79 -267 792 182 12 42 chr1_random 3731309 3731474 -5424645 - FAM SINE Alu 0 49 1 1619 146 19 0 chr1_random 3731474 3731734 -5424385 + MER7A DNA MER2_type 73 337 0 2247 234 43 74 chr1_random 3731862 3731922 -5424197 + L1MD3 LINE L1 6365 6425 -1570 2062 117 31 0 chr1_random 3731922 3732212 -5423907 + AluSx SINE Alu 3 301 -11 2247 234 43 74 chr1_random 3732212 3732333 -5423786 + L1MD3 LINE L1 6425 6548 -1447 2768 183 25 73 chr1_random 3732333 3732967 -5423152 - MER6A DNA MER2_type -1 604 1 2247 234 43 74 chr1_random 3732967 3733727 -5422392 + L1MD3 LINE L1 6548 7278 -717 465 242 8 31 chr1_random 3733727 3733855 -5422264 + MLT1F1 LTR MaLR 1 125 -442 2462 185 81 20 chr1_random 3733855 3734412 -5421707 + L1MD3 LINE L1 7404 7994 -1 297 0 0 0 chr1_random 3734974 3735007 -5421112 + (TA)n Simple_repeat Simple_repeat 2 34 0 1861 277 54 26 chr1_random 3735205 3735782 -5420337 - MLT1E LTR MaLR 0 593 1 26 74 0 0 chr1_random 3735944 3735998 -5420121 + AT_rich Low_complexity Low_complexity 1 54 0 5873 200 58 24 chr1_random 3737897 3738323 -5417796 + L1PA12 LINE L1 18 428 -6434 1915 93 118 14 chr1_random 3738323 3738603 -5417516 - AluY SINE Alu -2 309 1 5873 200 58 24 chr1_random 3738603 3739429 -5416690 + L1PA12 LINE L1 428 1252 -5610 * 12808 245 37 28 chr1_random 3739422 3744212 -5411907 + L1PA12 LINE L1 1982 6881 -3 347 231 39 8 chr1_random 3744221 3744351 -5411768 + L1MA7 LINE L1 6158 6291 0 197 225 0 0 chr1_random 3744427 3744467 -5411652 + L2 LINE L2 3274 3313 0 24 0 0 0 chr1_random 3744472 3744496 -5411623 + AT_rich Low_complexity Low_complexity 1 24 0 207 216 20 0 chr1_random 3746495 3746546 -5409573 + A-rich Low_complexity Low_complexity 2 53 0 549 117 18 9 chr1_random 3747486 3747597 -5408522 + (TAGA)n Simple_repeat Simple_repeat 4 115 0 393 319 81 23 chr1_random 3747708 3748018 -5408101 + L1ME4a LINE L1 5632 5962 -159 581 244 78 22 chr1_random 3748641 3748821 -5407298 + MLT1J LTR MaLR 1 190 -321 6089 103 24 0 chr1_random 3750104 3751025 -5405094 - L1PA10 LINE L1 -5 6163 5232 188 294 24 47 chr1_random 3751367 3751452 -5404667 - L3 LINE CR1 -884 693 611 4112 109 36 3 chr1_random 3751820 3752434 -5403685 - MER41B LTR ERV1 -1 634 1 347 366 12 6 chr1_random 3752472 3752636 -5403483 - L2 LINE L2 -296 3017 2853 359 147 15 15 chr1_random 3752684 3752752 -5403367 - MER101B LTR ERV1 -29 541 474 468 223 18 9 chr1_random 3752864 3752976 -5403143 - MER101 LTR ERV1 -302 172 60 404 331 85 44 chr1_random 3753001 3753362 -5402757 - L2 LINE L2 -466 2848 2468 1031 217 28 108 chr1_random 3753362 3753759 -5402360 + MLT1A1 LTR MaLR 1 365 0 404 331 85 44 chr1_random 3753759 3753787 -5402332 - L2 LINE L2 -846 2468 2443 342 326 38 59 chr1_random 3753793 3753963 -5402156 + MIR SINE MIR 30 195 -67 2226 106 3 0 chr1_random 3753963 3754265 -5401854 + AluSq SINE Alu 1 303 -10 342 326 38 59 chr1_random 3754265 3754330 -5401789 + MIR SINE MIR 195 260 -2 226 371 38 15 chr1_random 3755732 3755864 -5400255 - MIR3 SINE MIR -66 142 8 466 250 134 18 chr1_random 3757626 3757790 -5398329 + MER5A DNA MER1_type 7 189 0 276 315 55 31 chr1_random 3758026 3758153 -5397966 + L2 LINE L2 3171 3300 -13 183 156 0 0 chr1_random 3758226 3758258 -5397861 + (TTA)n Simple_repeat Simple_repeat 1 32 0 764 204 0 0 chr1_random 3758603 3758740 -5397379 - FRAM SINE Alu -30 146 10 282 271 56 126 chr1_random 3758939 3759017 -5397102 + L2 LINE L2 2991 3073 -240 7564 125 43 19 chr1_random 3759017 3760269 -5395850 + HSMAR1 DNA Mariner 4 1285 -2 282 271 56 126 chr1_random 3760269 3760404 -5395715 + L2 LINE L2 3073 3189 -124 2449 212 7 50 chr1_random 3761317 3761760 -5394359 - MLT2B2 LTR ERVL 0 515 55 2313 144 17 6 chr1_random 3761760 3762120 -5393999 - THE1B LTR MaLR 0 364 1 9618 123 14 62 chr1_random 3762120 3763779 -5392340 - THE1B-int LTR MaLR 0 1580 1 2379 137 20 6 chr1_random 3763779 3764137 -5391982 - THE1B LTR MaLR 0 364 2 2449 212 7 50 chr1_random 3764137 3764229 -5391890 - MLT2B2 LTR ERVL -457 58 1 2230 100 3 0 chr1_random 3765378 3765669 -5390450 + AluSx SINE Alu 1 292 -20 287 340 49 59 chr1_random 3767303 3767506 -5388613 + MIR SINE MIR 7 207 -55 1312 126 18 27 chr1_random 3768881 3769104 -5387015 - THE1C LTR MaLR 0 375 155 1033 78 7 0 chr1_random 3769108 3769249 -5386870 + AluY SINE Alu 154 295 -16 990 159 6 0 chr1_random 3769249 3769412 -5386707 - THE1C LTR MaLR -211 164 1 207 0 0 0 chr1_random 3769707 3769730 -5386389 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 198 342 25 13 chr1_random 3770147 3770226 -5385893 - MIR SINE MIR -136 126 47 665 162 142 10 chr1_random 3770373 3770553 -5385566 - MER6 DNA MER2_type 0 865 -65 293 358 73 22 chr1_random 3770553 3770690 -5385429 - MIR SINE MIR -111 151 8 282 56 0 0 chr1_random 3772653 3772689 -5383430 + (TG)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr1_random 3772993 3773017 -5383102 + AT_rich Low_complexity Low_complexity 1 24 0 234 105 0 0 chr1_random 3773280 3773318 -5382801 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1065 213 8 29 chr1_random 3774345 3774589 -5381530 - L1PA13 LINE L1 -4889 1898 1660 368 195 26 26 chr1_random 3774586 3774663 -5381456 + L1M1 LINE L1 327 403 -7162 * 2009 142 17 0 chr1_random 3775319 3775664 -5380455 - L1MA1 LINE L1 -131 7590 7240 * 11254 187 27 19 chr1_random 3775662 3778319 -5377800 - L1MA1 LINE L1 -743 6822 4207 6713 184 51 116 chr1_random 3778317 3780095 -5376024 - L1MA1 LINE L1 -5576 1989 327 * 11570 214 24 24 chr1_random 3780092 3781056 -5375063 + L1P LINE L1 1023 1986 -4160 817 88 0 0 chr1_random 3781056 3781169 -5374950 + L1PA5 LINE L1 6042 6154 0 11570 214 24 24 chr1_random 3781169 3783039 -5373080 + L1P LINE L1 1986 3860 -2286 2294 118 15 0 chr1_random 3783039 3783374 -5372745 + L1PA11 LINE L1 5826 6169 -5 11570 214 24 24 chr1_random 3783374 3783386 -5372733 + L1P LINE L1 3859 3870 -2276 22 70 0 0 chr1_random 3783387 3783430 -5372689 + AT_rich Low_complexity Low_complexity 1 43 0 911 259 63 12 chr1_random 3783529 3783784 -5372335 - L1MA1 LINE L1 -7234 331 64 23 33 0 0 chr1_random 3784201 3784231 -5371888 + AT_rich Low_complexity Low_complexity 1 30 0 447 265 65 41 chr1_random 3784437 3784607 -5371512 + MIR SINE MIR 74 247 -15 1894 266 57 25 chr1_random 3785357 3785954 -5370165 - MLT1E3 LTR MaLR -6 618 3 18553 172 22 70 chr1_random 3787959 3789883 -5366236 + L1M1 LINE L1 19 2034 -5531 2109 141 48 22 chr1_random 3789883 3790238 -5365881 - THE1B LTR MaLR 0 364 1 10856 115 19 5 chr1_random 3790238 3791796 -5364323 - THE1B-int LTR MaLR 0 1580 1 413 164 0 0 chr1_random 3791796 3791863 -5364256 - THE1B LTR MaLR 0 375 309 1045 118 146 17 chr1_random 3791852 3792030 -5364089 - THE1B LTR MaLR -163 201 1 * 18553 172 22 70 chr1_random 3792030 3796874 -5359245 + L1M1 LINE L1 2198 6687 -878 571 332 143 35 chr1_random 3797654 3798465 -5357654 + L1MC4a LINE L1 2973 3871 -2275 2078 328 110 23 chr1_random 3798466 3799831 -5356288 + L2 LINE L2 1822 3309 -4 300 273 84 39 chr1_random 3800013 3800324 -5355795 + L1MC4a LINE L1 5043 5367 -779 206 0 69 0 chr1_random 3800334 3800363 -5355756 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 523 308 98 34 chr1_random 3800569 3800956 -5355163 + L1MC4a LINE L1 5464 5875 -1933 308 268 36 72 chr1_random 3804105 3804243 -5351876 + MIR3 SINE MIR 46 178 -30 235 346 29 19 chr1_random 3804426 3804530 -5351589 - MIR3 SINE MIR -54 154 50 200 245 41 0 chr1_random 3804703 3804752 -5351367 - MIR3 SINE MIR -8 200 150 768 247 16 5 chr1_random 3805697 3805887 -5350232 + MIR SINE MIR 59 250 -12 333 216 144 50 chr1_random 3806221 3806360 -5349759 - MIR SINE MIR -43 219 68 24 0 0 0 chr1_random 3806384 3806408 -5349711 + AT_rich Low_complexity Low_complexity 1 24 0 1882 149 72 9 chr1_random 3806557 3806892 -5349227 + LTR42 LTR ERVL 1 356 -139 719 235 22 87 chr1_random 3857812 3858003 -5298116 - MER20 DNA MER1_type -4 215 40 1991 171 3 9 chr1_random 3858003 3858342 -5297777 + MER1B DNA MER1_type 1 337 0 719 235 22 87 chr1_random 3858342 3858380 -5297739 - MER20 DNA MER1_type -179 40 1 255 61 0 0 chr1_random 3858443 3858476 -5297643 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 420 68 41 0 chr1_random 3858654 3858727 -5297392 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 277 244 122 49 chr1_random 3858841 3859046 -5297073 - L1MC5 LINE L1 -389 7572 7353 7712 192 21 23 chr1_random 3859066 3859548 -5296571 + MER70-int LTR ERVL 763 1245 -4519 2014 104 46 0 chr1_random 3859548 3859828 -5296291 + AluSc SINE Alu 1 293 -16 1140 80 11 6 chr1_random 3859836 3860011 -5296108 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 7712 192 21 23 chr1_random 3860011 3861831 -5294288 + MER70-int LTR ERVL 1252 3143 -2621 4292 183 63 10 chr1_random 3861936 3862945 -5293174 + MER70-int LTR ERVL 75 1191 -3832 5008 181 18 5 chr1_random 3862945 3863816 -5292303 + MER70-int LTR ERVL 1621 2503 -2520 2972 187 22 4 chr1_random 3863814 3864782 -5291337 + MER70-int LTR ERVL 2959 3964 -1059 * 813 167 15 0 chr1_random 3864783 3864915 -5291204 + MER70A LTR ERVL 339 472 0 674 196 101 32 chr1_random 3864915 3865073 -5291046 - MIR SINE MIR -88 174 6 22 0 0 0 chr1_random 3865262 3865284 -5290835 + AT_rich Low_complexity Low_complexity 1 22 0 2273 109 0 0 chr1_random 3867289 3867592 -5288527 - AluSx SINE Alu -9 303 1 21 0 0 0 chr1_random 3868535 3868556 -5287563 + AT_rich Low_complexity Low_complexity 1 21 0 572 204 0 0 chr1_random 3868847 3868945 -5287174 - MER70A-int LTR ERVL -4925 98 1 2155 177 44 48 chr1_random 3868945 3869419 -5286700 - MER70A LTR ERVL 0 472 1 21 71 0 0 chr1_random 3870893 3870935 -5285184 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 0 chr1_random 3870988 3871282 -5284837 - AluSx SINE Alu -18 294 1 22 56 0 0 chr1_random 3871308 3871344 -5284775 + AT_rich Low_complexity Low_complexity 1 36 0 2146 110 10 0 chr1_random 3873468 3873767 -5282352 + AluY SINE Alu 1 302 -9 196 333 37 56 chr1_random 3873925 3874033 -5282086 - MIR SINE MIR -80 128 23 722 266 93 18 chr1_random 3874523 3874749 -5281370 + MIR SINE MIR 20 262 0 1003 180 98 42 chr1_random 3875203 3875546 -5280573 + MSTD LTR MaLR 1 396 0 207 0 0 0 chr1_random 3875724 3875747 -5280372 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 346 311 158 24 chr1_random 3876694 3876858 -5279261 - MER5A DNA MER1_type 0 189 4 671 344 155 6 chr1_random 3878618 3879095 -5277024 - L2 LINE L2 -1738 1576 1029 812 254 127 41 chr1_random 3879156 3879518 -5276601 - MLT2D LTR ERVL -20 394 2 268 293 101 0 chr1_random 3879542 3879641 -5276478 - L2 LINE L2 -2339 975 867 229 279 33 0 chr1_random 3879715 3879733 -5276386 + MER3 DNA MER1_type 28 47 -162 238 269 0 0 chr1_random 3879733 3879785 -5276334 - MER3 DNA MER1_type 0 209 158 201 220 203 17 chr1_random 3882693 3882752 -5273367 + L2 LINE L2 3234 3303 -10 366 251 96 12 chr1_random 3882918 3883085 -5273034 - L1MD3 LINE L1 -7 7988 7808 396 0 0 0 chr1_random 3883085 3883129 -5272990 + (T)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr1_random 3883155 3883175 -5272944 + (G)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr1_random 3883276 3883303 -5272816 + AT_rich Low_complexity Low_complexity 1 27 0 32 0 0 0 chr1_random 3883344 3883376 -5272743 + AT_rich Low_complexity Low_complexity 1 32 0 1631 213 3 3 chr1_random 3884076 3884381 -5271738 - AluSx SINE Alu -7 305 1 237 154 31 46 chr1_random 3885053 3885118 -5271001 - LTR67 LTR ERVL -489 68 5 1977 141 7 0 chr1_random 3886171 3886455 -5269664 - AluSg SINE Alu -23 287 2 447 327 75 0 chr1_random 3886472 3886631 -5269488 - MIR SINE MIR -67 195 25 685 236 30 52 chr1_random 3887190 3887423 -5268696 + L2 LINE L2 2310 2537 -777 289 189 54 99 chr1_random 3887428 3887539 -5268580 + L1MC5 LINE L1 7765 7870 -91 211 184 0 0 chr1_random 3887617 3887655 -5268464 + (CAGAGA)n Simple_repeat Simple_repeat 2 39 0 628 293 179 43 chr1_random 3887684 3888228 -5267891 + L2 LINE L2 2609 3223 -90 320 266 151 77 chr1_random 3889344 3889705 -5266414 - MLT1H LTR MaLR -5 544 142 1788 132 57 46 chr1_random 3889705 3890076 -5266043 + THE1C LTR MaLR 1 375 0 320 266 151 77 chr1_random 3890076 3890158 -5265961 - MLT1H LTR MaLR -407 142 68 433 287 42 21 chr1_random 3890232 3890375 -5265744 + MIR SINE MIR 104 249 -13 24 0 0 0 chr1_random 3890501 3890525 -5265594 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr1_random 3891413 3891435 -5264684 + (TA)n Simple_repeat Simple_repeat 2 23 0 267 313 35 80 chr1_random 3892973 3893174 -5262945 - MLT1J LTR MaLR -299 212 21 557 340 108 32 chr1_random 3893208 3893670 -5262449 + MLT1K LTR MaLR 16 512 -76 1145 208 32 0 chr1_random 3893850 3894066 -5262053 - MLT1A1 LTR MaLR -3 362 140 3869 129 35 2 chr1_random 3894087 3894708 -5261411 - L1PA15 LINE L1 0 6165 5524 5337 190 43 56 chr1_random 3894782 3896075 -5260044 + L1P4 LINE L1 3895 5153 -1012 209 81 0 27 chr1_random 3896075 3896112 -5260007 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 5337 190 43 56 chr1_random 3896112 3896477 -5259642 + L1P4 LINE L1 5153 5521 -644 704 189 0 49 chr1_random 3896477 3896641 -5259478 - MLT1A1 LTR MaLR -209 156 1 209 298 0 0 chr1_random 3896986 3897033 -5259086 + L2 LINE L2 3244 3290 -23 4847 187 62 31 chr1_random 3897034 3898422 -5257697 - L1MC1 LINE L1 0 6333 4889 1527 143 20 0 chr1_random 3898456 3898701 -5257418 - L1PA13 LINE L1 -5 6158 5909 2356 186 0 0 chr1_random 3898701 3899130 -5256989 + L1P LINE L1 4835 5263 -883 776 196 79 29 chr1_random 3899133 3899373 -5256746 - L1MC1 LINE L1 -1247 4899 4648 2436 105 14 3 chr1_random 3900232 3900583 -5255536 + THE1A LTR MaLR 1 355 0 2231 98 12 6 chr1_random 3900583 3900910 -5255209 + THE1A-int LTR MaLR 1 329 -1251 7174 93 8 0 chr1_random 3901010 3901985 -5254134 + THE1A-int LTR MaLR 598 1580 0 2024 97 7 4 chr1_random 3901986 3902265 -5253854 + THE1A LTR MaLR 2 281 -74 9816 106 16 1 chr1_random 3902269 3903668 -5252451 - L1P LINE L1 -4725 1421 3 182 237 34 34 chr1_random 3904220 3904279 -5251840 - MIR SINE MIR 0 262 204 417 269 72 52 chr1_random 3905477 3905670 -5250449 + MIR SINE MIR 20 216 -46 1271 99 0 0 chr1_random 3905679 3905841 -5250278 + AluSp SINE Alu 137 298 -15 1994 156 36 25 chr1_random 3905960 3906320 -5249799 + THE1B LTR MaLR 1 364 0 2000 150 3 3 chr1_random 3906342 3906649 -5249470 - AluSx SINE Alu -5 307 1 232 215 0 31 chr1_random 3906667 3906732 -5249387 + A-rich Low_complexity Low_complexity 3 65 0 397 257 22 15 chr1_random 3906870 3907006 -5249113 - L1MC4 LINE L1 -2 8040 7904 271 295 121 12 chr1_random 3907077 3907250 -5248869 - L1MC4 LINE L1 -138 7904 7713 297 189 27 0 chr1_random 3907350 3907424 -5248695 + L1MC4 LINE L1 7136 7211 -831 357 292 88 15 chr1_random 3907467 3907604 -5248515 + L1MC4 LINE L1 7364 7510 -532 379 310 56 14 chr1_random 3909669 3909811 -5246308 + L2 LINE L2 3161 3308 -5 425 159 0 11 chr1_random 3909963 3910051 -5246068 + (TGGA)n Simple_repeat Simple_repeat 4 90 0 201 178 22 0 chr1_random 3910055 3910100 -5246019 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 348 264 195 44 chr1_random 3911841 3912000 -5244119 + MIR SINE MIR 10 192 -70 338 294 22 0 chr1_random 3912802 3912894 -5243225 + MLT1J2 LTR MaLR 69 162 -288 290 311 26 63 chr1_random 3912957 3913147 -5242972 + MLT1J2 LTR MaLR 266 448 -2 190 338 67 31 chr1_random 3913467 3913692 -5242427 - L2 LINE L2 -219 3053 2821 24 32 0 0 chr1_random 3915884 3915915 -5240204 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr1_random 3916128 3916149 -5239970 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1_random 3916313 3916343 -5239776 + AT_rich Low_complexity Low_complexity 1 30 0 1075 291 21 28 chr1_random 3916377 3916807 -5239312 - L1ME3 LINE L1 -66 6096 5670 663 261 0 13 chr1_random 3916853 3917010 -5239109 - AluJb SINE Alu -157 155 1 587 310 18 34 chr1_random 3917010 3917241 -5238878 - L1ME3 LINE L1 -476 5694 5461 5218 141 2 0 chr1_random 3917241 3918463 -5237656 - L1PA13 LINE L1 -7 6156 4950 587 310 18 34 chr1_random 3918463 3918490 -5237629 - L1ME3 LINE L1 -709 5461 5435 6343 61 1 0 chr1_random 3918674 3919464 -5236655 - L1PA7 LINE L1 -4 6150 5360 487 361 71 0 chr1_random 3920113 3920365 -5235754 + HAL1 LINE L1 431 700 -1807 304 283 78 34 chr1_random 3920503 3920949 -5235170 - L1MEc LINE L1 -4038 2502 2044 201 39 0 0 chr1_random 3921138 3921164 -5234955 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 9776 109 1 25 chr1_random 3921164 3922627 -5233492 - L1PA8 LINE L1 -11 7599 6178 213 39 0 0 chr1_random 3922627 3922653 -5233466 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9776 109 1 25 chr1_random 3922653 3923488 -5232631 - L1PA8 LINE L1 -1432 6178 5324 10115 160 68 16 chr1_random 3923488 3925473 -5230646 - L1PA8 LINE L1 -3278 4306 885 1421 201 10 33 chr1_random 3925474 3925639 -5230480 - AluJb SINE Alu -16 296 140 2359 71 7 3 chr1_random 3925639 3925935 -5230184 - AluY SINE Alu -14 297 1 1421 201 10 33 chr1_random 3925935 3926072 -5230047 - AluJb SINE Alu -172 140 1 956 281 108 46 chr1_random 3926078 3926292 -5229827 - L1MEc LINE L1 -4550 1990 1791 2339 89 60 3 chr1_random 3926292 3926641 -5229478 - L1PA13 LINE L1 0 6163 5795 956 281 108 46 chr1_random 3926641 3927252 -5228867 - L1MEc LINE L1 -4749 1791 1114 3690 311 68 48 chr1_random 3927269 3928230 -5227889 - L2 LINE L2 -70 3243 2302 230 0 33 0 chr1_random 3928230 3928260 -5227859 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3690 311 68 48 chr1_random 3928260 3929245 -5226874 - L2 LINE L2 -1011 2302 1244 302 230 47 14 chr1_random 3929267 3929415 -5226704 + HAL1 LINE L1 1033 1185 -1322 25 0 0 0 chr1_random 3929454 3929479 -5226640 + AT_rich Low_complexity Low_complexity 1 25 0 591 328 81 7 chr1_random 3929649 3929716 -5226403 + HAL1 LINE L1 1516 1577 -930 342 0 0 0 chr1_random 3929716 3929754 -5226365 + (TA)n Simple_repeat Simple_repeat 2 39 0 2141 115 0 7 chr1_random 3929754 3930058 -5226061 - AluSq SINE Alu -7 306 5 591 328 81 7 chr1_random 3930058 3930285 -5225834 + HAL1 LINE L1 1576 1833 -674 627 282 125 84 chr1_random 3930406 3931076 -5225043 + L2 LINE L2 2598 3298 -15 359 288 49 6 chr1_random 3931098 3931261 -5224858 + HAL1 LINE L1 1980 2149 -358 30 0 0 0 chr1_random 3931266 3931296 -5224823 + AT_rich Low_complexity Low_complexity 1 30 0 2121 129 0 0 chr1_random 3931494 3931789 -5224330 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr1_random 3931862 3931883 -5224236 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr1_random 3931911 3931941 -5224178 + AT_rich Low_complexity Low_complexity 1 30 0 2311 57 0 17 chr1_random 3932103 3932401 -5223718 + AluY SINE Alu 1 293 -18 23 0 0 0 chr1_random 3933555 3933578 -5222541 + AT_rich Low_complexity Low_complexity 1 23 0 490 236 86 21 chr1_random 3933761 3933901 -5222218 + MER77 LTR ERV1 67 215 -390 723 293 4 35 chr1_random 3933901 3934133 -5221986 - HERVL40 LTR ERVL -28 5502 5278 762 240 62 105 chr1_random 3935160 3935485 -5220634 - HERVL40 LTR ERVL -691 4660 2036 652 198 32 37 chr1_random 3935485 3935653 -5220466 - HERVL40 LTR ERVL -1025 2012 1940 243 309 74 0 chr1_random 3935862 3935943 -5220176 + L2 LINE L2 3227 3313 0 309 324 37 15 chr1_random 3936042 3936178 -5219941 + L1P1 LINE L1 5686 5824 -331 208 317 87 48 chr1_random 3937975 3938079 -5218040 - L2 LINE L2 -8 3305 3198 231 197 76 0 chr1_random 3938277 3938343 -5217776 - MIR SINE MIR -61 201 131 22 0 0 0 chr1_random 3938659 3938681 -5217438 + AT_rich Low_complexity Low_complexity 1 22 0 200 290 32 32 chr1_random 3939210 3939272 -5216847 - L2 LINE L2 -498 2816 2755 749 313 135 0 chr1_random 3939360 3939664 -5216455 - L2 LINE L2 -785 2529 2185 786 261 124 48 chr1_random 3940093 3940407 -5215712 + LTR16A1 LTR ERVL 107 444 -13 2855 137 5 2 chr1_random 3940735 3941181 -5214938 - Tigger3b DNA MER2_type -35 1197 751 5691 203 23 10 chr1_random 3941192 3942494 -5213625 - L1 LINE L1 -2296 3850 2532 4058 156 25 19 chr1_random 3942498 3943253 -5212866 - Tigger3b DNA MER2_type -471 760 1 4124 142 51 6 chr1_random 3943332 3944021 -5212098 + MER72 LTR ERV1 3 722 0 286 300 43 14 chr1_random 3944411 3944551 -5211568 + MER41B LTR ERV1 259 402 -233 235 237 21 43 chr1_random 3944916 3945009 -5211110 + GA-rich Low_complexity Low_complexity 1 91 0 724 303 66 0 chr1_random 3946422 3946650 -5209469 - MIR SINE MIR -7 255 13 318 265 53 68 chr1_random 3947424 3947556 -5208563 + L2 LINE L2 3180 3309 -4 4349 64 4 0 chr1_random 3950363 3950925 -5205194 - L1PA7 LINE L1 -7 6147 5584 1191 331 89 31 chr1_random 3951365 3952204 -5203915 + L2 LINE L2 1798 2685 -629 301 260 167 0 chr1_random 3953649 3953745 -5202374 + MLT1E LTR MaLR 48 159 -434 250 206 54 0 chr1_random 3953751 3953843 -5202276 + (TA)n Simple_repeat Simple_repeat 2 98 0 507 165 0 0 chr1_random 3953843 3953928 -5202191 + MLT1E1 LTR MaLR 568 652 -2 482 305 102 15 chr1_random 3953992 3954189 -5201930 + MIR SINE MIR 36 249 -13 186 43 0 0 chr1_random 3955064 3955087 -5201032 + (GTTTG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr1_random 3955790 3955817 -5200302 + AT_rich Low_complexity Low_complexity 1 27 0 256 321 19 104 chr1_random 3956439 3956651 -5199468 + L2 LINE L2 2898 3091 -181 549 270 75 49 chr1_random 3957236 3957503 -5198616 + L2 LINE L2 918 1191 -2123 200 200 0 0 chr1_random 3957607 3957647 -5198472 - L2 LINE L2 -4 3309 3270 458 99 113 0 chr1_random 3957671 3957742 -5198377 - AluJ/FRAM SINE Alu -15 297 219 268 327 69 0 chr1_random 3958061 3958162 -5197957 + MIR SINE MIR 49 156 -106 244 333 9 0 chr1_random 3959724 3959832 -5196287 - MER102b DNA MER1_type -1 340 232 2330 94 0 0 chr1_random 3960976 3961275 -5194844 + AluY SINE Alu 1 299 -12 292 57 0 0 chr1_random 3961351 3961386 -5194733 - tRNA-Val-GTG tRNA tRNA -39 37 3 5906 43 1 0 chr1_random 3961386 3962106 -5194013 + L1PA4 LINE L1 5434 6154 -1 204 296 0 0 chr1_random 3962618 3962689 -5193430 + (TTA)n Simple_repeat Simple_repeat 1 71 0 9587 161 5 10 chr1_random 3963567 3965264 -5190855 - L1P LINE L1 -1884 4262 2574 6225 90 16 0 chr1_random 3965264 3966485 -5189634 + L1PA10 LINE L1 4926 6163 -5 32 26 0 0 chr1_random 3966485 3966524 -5189595 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr1_random 3966978 3967019 -5189100 + AT_rich Low_complexity Low_complexity 1 41 0 981 184 0 0 chr1_random 3968706 3968869 -5187250 - FRAM SINE Alu -10 166 4 526 292 65 0 chr1_random 3969613 3969767 -5186352 + MIR SINE MIR 29 192 -70 689 354 40 18 chr1_random 3969768 3970212 -5185907 + L1M4 LINE L1 1216 1669 -5827 1896 281 56 56 chr1_random 3970651 3971799 -5184320 + L1M4 LINE L1 2049 3169 -4396 1348 233 11 3 chr1_random 3971799 3972086 -5184033 + AluJo SINE Alu 3 291 -11 1896 281 56 56 chr1_random 3972086 3972448 -5183671 + L1M4 LINE L1 3169 3530 -4035 509 267 82 45 chr1_random 3972450 3972806 -5183313 + L1M4 LINE L1 5892 6260 -1305 217 306 0 0 chr1_random 3974603 3974665 -5181454 - MIR3 SINE MIR -9 199 138 29 28 0 0 chr1_random 3975336 3975372 -5180747 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr1_random 3975691 3975723 -5180396 + AT_rich Low_complexity Low_complexity 1 32 0 270 383 78 0 chr1_random 3976250 3976391 -5179728 + MER5A DNA MER1_type 16 167 -22 415 160 13 13 chr1_random 3976732 3976807 -5179312 - HSMAR2 DNA Mariner -331 971 897 237 284 9 37 chr1_random 3976829 3976938 -5179181 - LTR33A LTR ERVL -415 108 3 258 286 80 40 chr1_random 3977145 3977320 -5178799 + MIR SINE MIR 77 258 -4 282 237 41 10 chr1_random 3977428 3977525 -5178594 - HsTC2 DNA Tc2 0 1900 1801 1921 260 109 9 chr1_random 3977541 3978191 -5177928 - HsTC2 DNA Tc2 -1182 716 2 21 0 0 0 chr1_random 3978418 3978439 -5177680 + AT_rich Low_complexity Low_complexity 1 21 0 213 274 144 71 chr1_random 3979693 3980033 -5176086 - L2 LINE L2 -62 3251 2887 1003 272 91 54 chr1_random 3980232 3980823 -5175296 + MLT1G LTR MaLR 15 590 0 21 57 0 0 chr1_random 3981034 3981069 -5175050 + AT_rich Low_complexity Low_complexity 1 35 0 270 95 0 0 chr1_random 3981170 3981212 -5174907 + (CA)n Simple_repeat Simple_repeat 1 42 0 299 265 4 0 chr1_random 3981274 3981360 -5174759 + MLT1H LTR MaLR 1 130 -419 322 223 0 47 chr1_random 3981398 3981546 -5174573 + G-rich Low_complexity Low_complexity 5 145 0 2041 127 0 0 chr1_random 3981636 3981958 -5174161 + AluSx SINE Alu 1 322 0 247 295 90 8 chr1_random 3982265 3982387 -5173732 - HsTC2 DNA Tc2 -1013 885 754 2254 108 3 0 chr1_random 3982853 3983159 -5172960 - AluSx SINE Alu -5 307 1 377 265 125 15 chr1_random 3983559 3983695 -5172424 - MLT1J1 LTR MaLR -275 171 21 870 73 81 0 chr1_random 3983907 3984031 -5172088 - MER85 DNA T2_type -5 134 1 226 269 139 19 chr1_random 3985280 3985388 -5170731 - MIR SINE MIR -72 190 70 545 266 65 24 chr1_random 3985948 3986117 -5170002 - MIR SINE MIR -29 233 58 21 0 0 0 chr1_random 3988318 3988339 -5167780 + AT_rich Low_complexity Low_complexity 1 21 0 1238 270 126 16 chr1_random 3988983 3989468 -5166651 + MER34 LTR ERV1 4 541 -1 1621 70 5 14 chr1_random 3989780 3989993 -5166126 - AluSg/x SINE Alu -26 284 74 350 168 0 14 chr1_random 3989993 3990065 -5166054 - L1MD3 LINE L1 -174 7821 7539 22 80 0 0 chr1_random 3990351 3990401 -5165718 + AT_rich Low_complexity Low_complexity 1 50 0 209 235 0 12 chr1_random 3990426 3990507 -5165612 + (TA)n Simple_repeat Simple_repeat 1 80 0 326 242 0 42 chr1_random 3990553 3990648 -5165471 + L1MC4 LINE L1 6613 6703 -1339 1140 200 57 4 chr1_random 3990895 3991140 -5164979 - Tigger2 DNA MER2_type -10 2708 2451 3348 166 83 35 chr1_random 3991193 3991917 -5164202 - Tigger2 DNA MER2_type -1959 759 1 38 61 0 0 chr1_random 3992032 3992098 -5164021 + AT_rich Low_complexity Low_complexity 1 66 0 2028 133 3 0 chr1_random 3992271 3992565 -5163554 + AluSq SINE Alu 1 295 -18 189 0 0 0 chr1_random 3992574 3992595 -5163524 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 483 319 98 21 chr1_random 3993583 3993738 -5162381 - L1ME3 LINE L1 -227 5935 5793 2084 124 20 0 chr1_random 3993738 3994036 -5162083 - AluSx SINE Alu -8 304 1 483 319 98 21 chr1_random 3994036 3994353 -5161766 - L1ME3 LINE L1 -369 5793 5420 268 275 109 22 chr1_random 3994430 3994568 -5161551 - L1ME3 LINE L1 -803 5343 5194 6002 192 40 53 chr1_random 3995528 3996866 -5159253 - MER52A LTR ERV1 -2 1753 434 289 260 73 0 chr1_random 3996886 3996982 -5159137 - MER52A LTR ERV1 -1607 148 46 230 303 15 0 chr1_random 3997497 3997563 -5158556 - MER52A LTR ERV1 -1688 67 1 334 284 20 0 chr1_random 3998377 3998479 -5157640 - MIR SINE MIR 0 262 159 253 387 48 8 chr1_random 3998551 3998675 -5157444 - L2 LINE L2 0 3272 3144 29 0 0 0 chr1_random 3999336 3999365 -5156754 + AT_rich Low_complexity Low_complexity 1 29 0 3211 38 2 0 chr1_random 3999365 3999796 -5156323 + L1PA4 LINE L1 5744 6175 0 252 86 0 0 chr1_random 4001349 4001384 -5154735 + (GA)n Simple_repeat Simple_repeat 1 35 0 468 0 0 0 chr1_random 4002048 4002100 -5154019 + (CA)n Simple_repeat Simple_repeat 2 53 0 21 36 0 0 chr1_random 4002178 4002206 -5153913 + AT_rich Low_complexity Low_complexity 1 28 0 257 250 183 0 chr1_random 4002949 4003053 -5153066 - HAL1 LINE L1 -2317 190 68 210 370 69 29 chr1_random 4003321 4003494 -5152625 - L2 LINE L2 -189 3083 2904 649 37 46 0 chr1_random 4003514 4003623 -5152496 + (TCTA)n Simple_repeat Simple_repeat 4 117 0 903 193 6 0 chr1_random 4003674 4003840 -5152279 - FRAM SINE Alu -9 167 1 258 264 0 0 chr1_random 4006168 4006221 -5149898 + L2 LINE L2 3215 3267 -5 500 273 13 0 chr1_random 4007505 4007655 -5148464 - MER63 DNA MER1_type -1 1059 908 333 152 80 80 chr1_random 4007653 4007778 -5148341 - MER63 DNA MER1_type -797 133 9 * 23 0 0 0 chr1_random 4007981 4008004 -5148115 + AT_rich Low_complexity Low_complexity 1 23 0 201 129 0 0 chr1_random 4009310 4009341 -5146778 + (CAG)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr1_random 4010290 4010311 -5145808 + AT_rich Low_complexity Low_complexity 1 21 0 974 181 16 39 chr1_random 4010827 4011009 -5145110 + MER21B LTR ERV1 1 178 -685 3314 182 25 16 chr1_random 4011098 4011736 -5144383 + MER21B LTR ERV1 208 851 -12 855 261 68 56 chr1_random 4012762 4013084 -5143035 + LTR16C LTR ERVL 164 489 -2 1158 247 58 17 chr1_random 4013582 4013930 -5142189 - MLT1A1 LTR MaLR 0 365 4 305 313 52 0 chr1_random 4014024 4014120 -5141999 - MER91C DNA MER1_type 0 140 40 493 312 49 29 chr1_random 4014540 4014889 -5141230 - L1M4 LINE L1 -506 5672 5317 926 253 112 86 chr1_random 4015856 4016381 -5139738 - MLT1H LTR MaLR 0 549 11 608 315 11 11 chr1_random 4016938 4017122 -5138997 + MER91B DNA MER1_type 7 190 0 885 254 66 63 chr1_random 4017202 4017521 -5138598 - L2 LINE L2 -1958 1356 1037 659 99 0 11 chr1_random 4017744 4017835 -5138284 + 5S rRNA rRNA 1 90 -31 26 0 0 0 chr1_random 4017855 4017881 -5138238 + AT_rich Low_complexity Low_complexity 1 26 0 1861 138 22 0 chr1_random 4019069 4019409 -5136710 + AluSx SINE Alu 1 346 0 23 54 0 0 chr1_random 4019534 4019571 -5136548 + AT_rich Low_complexity Low_complexity 1 37 0 236 305 146 31 chr1_random 4019627 4020339 -5135780 - L1M4 LINE L1 -2911 3235 2442 2174 193 9 32 chr1_random 4020352 4020788 -5135331 + MSTB LTR MaLR 1 426 0 641 293 4 44 chr1_random 4021493 4021722 -5134397 + MER58A DNA MER1_type 5 224 0 487 282 110 52 chr1_random 4021730 4022248 -5133871 - HAL1b LINE L1 -740 608 61 300 27 0 0 chr1_random 4022438 4022475 -5133644 + (TTG)n Simple_repeat Simple_repeat 2 38 0 198 281 232 0 chr1_random 4023235 4023317 -5132802 + MER5A DNA MER1_type 88 188 -1 2145 166 8 0 chr1_random 4023356 4023717 -5132402 + THE1B LTR MaLR 1 364 0 23 54 0 0 chr1_random 4024440 4024477 -5131642 + AT_rich Low_complexity Low_complexity 1 37 0 576 167 28 28 chr1_random 4024480 4024588 -5131531 - FLAM_C SINE Alu -34 109 2 1911 173 125 5 chr1_random 4024847 4025223 -5130896 - MSTA LTR MaLR 0 428 8 1083 184 32 14 chr1_random 4025482 4025760 -5130359 - L1MA7 LINE L1 -10 6281 5999 733 281 67 67 chr1_random 4025865 4026224 -5129895 + L2 LINE L2 2954 3312 -1 1566 266 66 8 chr1_random 4026476 4026979 -5129140 - L1ME2 LINE L1 -297 5867 5336 1226 244 0 7 chr1_random 4027009 4027292 -5128827 - AluJb SINE Alu -21 291 11 2586 270 80 23 chr1_random 4027304 4028498 -5127621 - L1ME2 LINE L1 -819 5327 4065 365 272 99 15 chr1_random 4028496 4028698 -5127421 + L1ME2 LINE L1 2604 2822 -3324 * 1729 240 146 22 chr1_random 4028809 4029660 -5126459 + L1ME2 LINE L1 5176 6143 -21 731 341 54 49 chr1_random 4029660 4030196 -5125923 + L2 LINE L2 2772 3308 -5 229 45 23 45 chr1_random 4030446 4030490 -5125629 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 286 290 39 29 chr1_random 4031721 4031827 -5124292 + MIR SINE MIR 42 147 -61 5039 214 19 19 chr1_random 4032807 4033536 -5122583 - L1MC2 LINE L1 0 6580 5849 1766 137 81 34 chr1_random 4033536 4033894 -5122225 - THE1C LTR MaLR 0 375 1 5039 214 19 19 chr1_random 4033894 4034458 -5121661 - L1MC2 LINE L1 -731 5849 5286 25 65 0 0 chr1_random 4034458 4034504 -5121615 + AT_rich Low_complexity Low_complexity 1 46 0 3381 244 28 2 chr1_random 4034504 4035368 -5120751 - L1MC2 LINE L1 -1933 4449 3564 1882 130 4 7 chr1_random 4035422 4035699 -5120420 + AluSx SINE Alu 5 280 -32 183 42 0 0 chr1_random 4035701 4035725 -5120394 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 324 295 143 48 chr1_random 4035865 4036075 -5120044 + L1MC4a LINE L1 6124 6353 -1455 702 269 28 58 chr1_random 4036087 4036369 -5119750 - L1MC2 LINE L1 -4969 1415 1200 2196 101 0 26 chr1_random 4036369 4036677 -5119442 - AluSq SINE Alu -13 300 1 702 269 28 58 chr1_random 4036677 4036872 -5119247 - L1MC2 LINE L1 -5184 1200 1001 1110 158 11 5 chr1_random 4036875 4037065 -5119054 - MER2 DNA MER2_type -3 342 152 316 309 73 37 chr1_random 4037158 4037349 -5118770 + MLT1J2 LTR MaLR 245 442 -8 26 30 0 0 chr1_random 4037525 4037558 -5118561 + AT_rich Low_complexity Low_complexity 1 33 0 195 342 29 62 chr1_random 4037709 4037949 -5118170 + L2 LINE L2 2556 2787 -527 230 318 31 31 chr1_random 4038347 4038476 -5117643 + MIR SINE MIR 84 212 -50 26 30 0 0 chr1_random 4038526 4038559 -5117560 + AT_rich Low_complexity Low_complexity 1 33 0 978 326 36 8 chr1_random 4038731 4039087 -5117032 + LTR16A LTR ERVL 65 430 -20 363 322 77 1 chr1_random 4041068 4041216 -5114903 - MIR SINE MIR -65 143 1 1790 107 0 50 chr1_random 4041308 4041589 -5114530 - AluSg SINE Alu -30 280 14 383 151 3 3 chr1_random 4041589 4041656 -5114463 - Alu SINE Alu -249 53 1 1078 259 27 84 chr1_random 4041767 4042293 -5113826 + L1MC5 LINE L1 6744 7239 -722 1736 219 119 23 chr1_random 4042354 4042407 -5113712 - MLT2B2 LTR ERVL 0 515 468 189 0 0 0 chr1_random 4042407 4042428 -5113691 + (TG)n Simple_repeat Simple_repeat 2 22 0 1736 219 119 23 chr1_random 4042428 4042844 -5113275 - MLT2B2 LTR ERVL -47 468 1 13443 192 26 4 chr1_random 4042844 4045370 -5110749 - ERVL-B2 LTR ERVL -7 5757 3176 252 257 119 9 chr1_random 4245860 4245969 -4910150 + REP3 LTR ERV 1 121 -441 750 252 61 33 chr1_random 4245980 4246267 -4909852 + L1ME2 LINE L1 5801 6093 -69 78 22 0 0 chr1_random 4246267 4246359 -4909760 + AT_rich Low_complexity Low_complexity 1 92 0 609 42 0 0 chr1_random 4246856 4246928 -4909191 - tRNA-Gln-CAG tRNA tRNA -3 72 1 809 158 0 20 chr1_random 4247117 4247269 -4908850 + AluY SINE Alu 150 298 -13 524 200 136 82 chr1_random 4247424 4247670 -4908449 - MLT1H LTR MaLR -249 300 1 2290 65 4 0 chr1_random 4247705 4248014 -4908105 - AluY SINE Alu 0 314 5 378 0 0 0 chr1_random 4248044 4248086 -4908033 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 905 164 48 14 chr1_random 4248116 4248372 -4907747 - MER4C-int LTR ERV1 -5761 837 505 1070 67 0 0 chr1_random 4248372 4248506 -4907613 - AluY SINE Alu 0 311 178 2724 99 75 35 chr1_random 4248506 4248962 -4907157 - MER4C-int LTR ERV1 -6124 474 1 350 91 0 18 chr1_random 4248964 4249019 -4907100 - MER4C LTR ERV1 0 465 412 569 209 167 65 chr1_random 4249897 4250112 -4906007 - MLT1E2 LTR MaLR -330 296 60 2021 201 35 31 chr1_random 4250112 4250153 -4905966 + L1M4 LINE L1 2297 2336 -3810 3346 145 0 4 chr1_random 4250153 4250650 -4905469 + LOR1a LTR ERV1 3 497 0 2021 201 35 31 chr1_random 4250650 4251091 -4905028 + L1M4 LINE L1 2336 2781 -3365 1638 189 58 7 chr1_random 4251804 4251919 -4904200 + AluJo SINE Alu 1 109 -203 249 98 0 0 chr1_random 4251919 4251960 -4904159 + (CA)n Simple_repeat Simple_repeat 2 42 0 1638 189 58 7 chr1_random 4251960 4252135 -4903984 + AluJo SINE Alu 109 306 -6 476 194 0 0 chr1_random 4252220 4252313 -4903806 - AluJ/FRAM SINE Alu -1 311 219 1936 106 20 0 chr1_random 4252327 4252581 -4903538 - AluY SINE Alu -52 259 1 852 174 7 20 chr1_random 4252581 4252730 -4903389 - AluJb SINE Alu -165 147 1 454 189 9 9 chr1_random 4253387 4253493 -4902626 - L1MB8 LINE L1 -9 6169 6064 188 271 131 57 chr1_random 4253880 4254002 -4902117 - MIR SINE MIR -61 147 17 342 268 212 15 chr1_random 4254922 4255120 -4900999 + MIR SINE MIR 5 241 -21 1964 150 23 3 chr1_random 4255396 4255702 -4900417 + AluSx SINE Alu 1 312 0 193 319 26 26 chr1_random 4255713 4255826 -4900293 + MIR SINE MIR 34 146 -116 516 266 50 46 chr1_random 4256287 4256505 -4899614 + MIR SINE MIR 34 252 -10 199 303 83 37 chr1_random 4256961 4257070 -4899049 + L3 LINE CR1 1462 1575 -2 2018 127 150 21 chr1_random 4257184 4257563 -4898556 - MSTA LTR MaLR 0 428 1 2139 128 3 3 chr1_random 4257641 4257938 -4898181 - AluSx SINE Alu -15 297 1 198 0 0 0 chr1_random 4258087 4258109 -4898010 + (T)n Simple_repeat Simple_repeat 1 22 0 979 181 0 0 chr1_random 4258269 4258424 -4897695 + AluSq SINE Alu 1 155 -158 233 111 44 0 chr1_random 4258526 4258571 -4897548 + C-rich Low_complexity Low_complexity 4 50 0 1694 145 35 35 chr1_random 4258571 4258861 -4897258 - AluSx SINE Alu -22 290 1 2473 164 36 11 chr1_random 4259356 4259806 -4896313 - LOR1b LTR ERV1 0 461 1 601 143 0 0 chr1_random 4259806 4259897 -4896222 - LOR1b-int LTR ERV1 0 8120 8030 * 1698 120 31 4 chr1_random 4259896 4260155 -4895964 - LOR1-int LTR ERV1 -2056 6064 5799 * 8938 119 40 9 chr1_random 4260131 4261576 -4894543 - LOR1-int LTR ERV1 -2582 5538 4049 478 175 0 70 chr1_random 4261576 4261690 -4894429 + FLAM_C SINE Alu 38 143 0 6445 117 14 58 chr1_random 4261713 4262404 -4893715 - LOR1-int LTR ERV1 -4058 4062 3435 1842 162 0 29 chr1_random 4262404 4262712 -4893407 - AluSx SINE Alu -13 299 1 6445 117 14 58 chr1_random 4262712 4263123 -4892996 - LOR1-int LTR ERV1 -4685 3435 3008 1311 287 43 24 chr1_random 4263414 4263878 -4892241 - L1MCc LINE L1 -5920 503 31 1392 208 46 58 chr1_random 4264743 4265137 -4890982 - MLT1B LTR MaLR -1 389 1 429 292 12 6 chr1_random 4265511 4265672 -4890447 - L2 LINE L2 -802 2512 2351 805 201 28 11 chr1_random 4266101 4266280 -4889839 + MER58 DNA MER1_type 2238 2419 -1 3332 156 28 3 chr1_random 4266448 4267248 -4888871 + L1PA16 LINE L1 5017 5833 -333 2117 119 3 0 chr1_random 4267250 4267545 -4888574 + AluSc SINE Alu 1 296 -13 1594 167 0 4 chr1_random 4268034 4268298 -4887821 + AluSx SINE Alu 49 311 -1 402 197 0 0 chr1_random 4268448 4268519 -4887600 - tRNA-Gly-GGG tRNA tRNA -3 71 1 2158 92 6 29 chr1_random 4269384 4269700 -4886419 - L1PA11 LINE L1 -1 6173 5865 2016 138 0 3 chr1_random 4269712 4270002 -4886117 + AluSc SINE Alu 1 289 -20 206 62 31 0 chr1_random 4270033 4270065 -4886054 + (TA)n Simple_repeat Simple_repeat 1 33 0 604 297 20 24 chr1_random 4270741 4271004 -4885115 + L1ME LINE L1 5293 5556 -606 1446 180 8 11 chr1_random 4271015 4271282 -4884837 + AluJb SINE Alu 19 284 -28 1416 178 0 8 chr1_random 4271314 4271555 -4884564 + AluSc SINE Alu 3 241 -68 583 274 30 13 chr1_random 4271555 4271785 -4884334 + L1MEc LINE L1 1042 1275 -5121 561 197 110 8 chr1_random 4271798 4271925 -4884194 - FLAM_C SINE Alu -2 141 2 1584 268 127 37 chr1_random 4271933 4272708 -4883411 + L1MEc LINE L1 1295 2138 -4258 789 11 0 0 chr1_random 4272900 4272990 -4883129 + (GA)n Simple_repeat Simple_repeat 2 91 0 1938 129 3 7 chr1_random 4272991 4273286 -4882833 + AluSc SINE Alu 6 299 -10 663 0 0 0 chr1_random 4274245 4274317 -4881802 + tRNA-His-CAC tRNA tRNA 1 72 -3 1253 240 61 26 chr1_random 4275369 4275936 -4880183 - L1ME LINE L1 -469 5695 5114 217 258 30 0 chr1_random 4276141 4276207 -4879912 + CT-rich Low_complexity Low_complexity 2 69 0 1784 266 55 44 chr1_random 4276503 4277193 -4878926 - L1ME2 LINE L1 -182 5982 5301 369 43 0 0 chr1_random 4277193 4277240 -4878879 + (TTG)n Simple_repeat Simple_repeat 2 48 0 1784 266 55 44 chr1_random 4277240 4277661 -4878458 - L1ME2 LINE L1 -863 5301 4848 1498 163 97 17 chr1_random 4277661 4277950 -4878169 + AluJb SINE Alu 1 312 0 1784 266 55 44 chr1_random 4277950 4278110 -4878009 - L1ME2 LINE L1 -1316 4848 4691 250 197 16 16 chr1_random 4278111 4278172 -4877947 - L1ME3 LINE L1 -53 6109 6049 6045 81 137 65 chr1_random 4278257 4279348 -4876771 + MER11A LTR ERVK 1 1266 0 282 185 19 0 chr1_random 4279348 4279402 -4876717 - HAL1 LINE L1 -2027 480 426 1476 179 33 61 chr1_random 4279593 4279956 -4876163 + MLT1A1 LTR MaLR 13 365 0 388 125 0 135 chr1_random 4281554 4281650 -4874469 + MER20 DNA MER1_type 83 165 -54 201 218 0 36 chr1_random 4282164 4282219 -4873900 - MIR SINE MIR -74 188 136 425 298 36 22 chr1_random 4282329 4282554 -4873565 + MIR SINE MIR 31 258 -4 1536 126 49 128 chr1_random 4282567 4282973 -4873146 - THE1C LTR MaLR 0 375 2 441 207 81 0 chr1_random 4282994 4283105 -4873014 - MER94 DNA DNA -3 131 12 1612 241 51 0 chr1_random 4283105 4283475 -4872644 + L1MD2 LINE L1 5953 6341 -18 191 353 69 0 chr1_random 4283541 4283657 -4872462 + L2 LINE L2 3050 3173 -140 * 343 217 174 71 chr1_random 4283650 4283834 -4872285 - L2 LINE L2 -1 3312 3110 1701 212 100 61 chr1_random 4283839 4284329 -4871790 - MLT2B1 LTR ERVL -8 512 4 203 312 32 21 chr1_random 4284357 4284450 -4871669 - L2 LINE L2 -232 3081 2988 * 267 241 72 12 chr1_random 4284449 4284532 -4871587 + L2 LINE L2 3162 3249 -64 1438 202 155 31 chr1_random 4287521 4288228 -4867891 - SATR1 Satellite Satellite -3 794 1 1442 170 25 64 chr1_random 4289628 4289976 -4866143 - MLT1A1 LTR MaLR -20 485 13 313 180 66 0 chr1_random 4290160 4290221 -4865898 + HAL1 LINE L1 416 480 -2027 4180 85 184 89 chr1_random 4290221 4291021 -4865098 - MER11A LTR ERVK 0 1266 391 1768 178 0 0 chr1_random 4291506 4291804 -4864315 - AluJb SINE Alu -14 298 1 3446 233 63 84 chr1_random 4291880 4292584 -4863535 - L1MEc LINE L1 -4759 1637 920 1723 157 15 0 chr1_random 4292584 4292881 -4863238 - AluSx SINE Alu 0 307 7 3446 233 63 84 chr1_random 4292881 4293306 -4862813 - L1MEc LINE L1 -5476 920 488 1416 141 18 9 chr1_random 4293306 4293533 -4862586 - L1MC1 LINE L1 -5 6328 6100 1860 133 34 77 chr1_random 4293536 4293888 -4862231 - MER1B DNA MER1_type 0 337 1 3446 233 63 84 chr1_random 4293888 4294389 -4861730 - L1MEc LINE L1 -5910 486 35 444 280 84 18 chr1_random 4294429 4294611 -4861508 + MIR3 SINE MIR 3 198 -63 198 0 0 0 chr1_random 4294645 4294667 -4861452 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1513 188 7 7 chr1_random 4296774 4297062 -4859057 - AluJb SINE Alu -24 288 1 1838 156 13 0 chr1_random 4297857 4298158 -4857961 + AluSx SINE Alu 1 305 -7 207 277 27 71 chr1_random 4298729 4298841 -4857278 - MIR SINE MIR -46 216 110 1491 125 0 0 chr1_random 4299864 4300080 -4856039 + AluSg/x SINE Alu 93 308 -2 188 353 58 31 chr1_random 4300136 4300360 -4855759 + L3 LINE CR1 66 295 -1282 180 0 0 0 chr1_random 4300572 4300592 -4855527 + (T)n Simple_repeat Simple_repeat 1 20 0 421 316 54 30 chr1_random 4301043 4301211 -4854908 - MER5B DNA MER1_type 0 178 7 1863 109 60 26 chr1_random 4301605 4301907 -4854212 + AluSp SINE Alu 1 312 -1 237 368 104 7 chr1_random 4302136 4302280 -4853839 + MIR3 SINE MIR 44 201 -7 1070 207 164 71 chr1_random 4303550 4304016 -4852103 - MER66A LTR ERV1 0 481 100 2415 138 3 0 chr1_random 4304082 4304431 -4851688 - MER66A-int LTR ERV1 0 6676 6327 1169 211 74 104 chr1_random 4304473 4304660 -4851459 - MER66-int LTR ERV1 -1643 6113 5922 2200 75 3 7 chr1_random 4304660 4304955 -4851164 + AluY SINE Alu 1 294 -17 1169 211 74 104 chr1_random 4304955 4304967 -4851152 - MER66-int LTR ERV1 -1834 5922 5911 2034 109 0 48 chr1_random 4304967 4305278 -4850841 + AluSg SINE Alu 3 298 -12 1169 211 74 104 chr1_random 4305278 4305551 -4850568 - MER66-int LTR ERV1 -1845 5911 4548 21 36 0 0 chr1_random 4305745 4305773 -4850346 + GC_rich Low_complexity Low_complexity 1 28 0 655 145 60 0 chr1_random 4305848 4305965 -4850154 - Tigger2 DNA MER2_type -261 2457 2334 358 109 0 5 chr1_random 4307650 4307715 -4848404 - Alu SINE Alu -254 46 1 323 288 130 40 chr1_random 4307835 4308012 -4848107 + HAL1 LINE L1 1317 1509 -998 353 255 28 38 chr1_random 4308022 4308128 -4847991 - MER90 LTR ERV1 -5 609 505 294 278 10 10 chr1_random 4308123 4308220 -4847899 - MER90 LTR ERV1 -228 386 290 * 1057 126 35 0 chr1_random 4308220 4308394 -4847725 + AluSg/x SINE Alu 122 301 -9 2020 115 3 20 chr1_random 4308395 4308699 -4847420 + AluSg SINE Alu 1 299 -11 493 245 124 5 chr1_random 4308724 4308935 -4847184 - MER90 LTR ERV1 -346 268 1 515 135 0 0 chr1_random 4308983 4309057 -4847062 + AluSx SINE Alu 12 85 -227 1630 255 13 40 chr1_random 4309057 4309508 -4846611 - LTR2 LTR ERV1 0 449 11 1486 109 0 14 chr1_random 4309512 4309732 -4846387 + AluSx SINE Alu 79 295 -17 1050 225 58 52 chr1_random 4309732 4310097 -4846022 + HAL1 LINE L1 1542 1908 -599 2057 73 3 120 chr1_random 4310114 4310456 -4845663 - AluSq SINE Alu 0 303 2 251 326 92 0 chr1_random 4310463 4310561 -4845558 - MIR SINE MIR -122 140 34 577 104 0 0 chr1_random 4310877 4310954 -4845165 - tRNA-Asn-AAC tRNA tRNA 0 77 1 225 312 64 0 chr1_random 4311414 4311523 -4844596 + L2 LINE L2 3198 3313 0 677 191 154 90 chr1_random 4311803 4312179 -4843940 + ERVL-F LTR ERVL 5323 5722 -42 230 193 18 0 chr1_random 4312184 4312241 -4843878 + GA-rich Low_complexity Low_complexity 3 60 0 401 270 27 16 chr1_random 4312277 4312413 -4843706 + MLT2F LTR ERVL 1 150 -478 424 148 11 80 chr1_random 4312697 4312785 -4843334 + MER30 DNA MER1_type 1 82 -148 1347 114 0 94 chr1_random 4312845 4313100 -4843019 + AluSx SINE Alu 1 231 -81 278 233 17 95 chr1_random 4313208 4313324 -4842795 - AluSq/x SINE Alu -181 122 16 1101 141 12 0 chr1_random 4313460 4313623 -4842496 - U1 snRNA snRNA 0 165 1 378 313 7 7 chr1_random 4314009 4314153 -4841966 - Charlie4 DNA MER1_type -3 1958 1815 311 140 18 0 chr1_random 4314200 4314257 -4841862 + AluSp/q SINE Alu 240 297 -6 241 274 143 0 chr1_random 4314336 4314511 -4841608 + HAL1 LINE L1 1064 1263 -1244 236 211 18 0 chr1_random 4314655 4314712 -4841407 - AluSp/q SINE Alu -6 297 240 405 300 105 16 chr1_random 4314713 4314903 -4841216 + Charlie4 DNA MER1_type 1752 1958 -3 2206 106 3 0 chr1_random 4315117 4315419 -4840700 + AluSx SINE Alu 1 303 -9 249 75 57 0 chr1_random 4315522 4315575 -4840544 + (TA)n Simple_repeat Simple_repeat 1 56 0 1963 88 46 18 chr1_random 4315699 4315983 -4840136 + AluSx SINE Alu 1 292 -20 2437 107 51 6 chr1_random 4316665 4317020 -4839099 + MLT2A2 LTR ERVL 24 394 -59 1006 107 50 0 chr1_random 4317021 4317180 -4838939 + BC200 scRNA scRNA 1 167 -33 402 76 91 0 chr1_random 4317182 4317248 -4838871 + MLT2A2 LTR ERVL 382 453 0 2169 95 3 20 chr1_random 4317273 4317577 -4838542 + AluSp SINE Alu 1 299 -14 671 208 61 133 chr1_random 4317653 4317762 -4838357 - LTR49 LTR ERV1 -245 350 235 1894 124 10 7 chr1_random 4317762 4317888 -4838231 + AluSx SINE Alu 3 127 -185 2129 85 0 4 chr1_random 4317888 4318233 -4837886 + AluY SINE Alu 1 344 0 1894 124 10 7 chr1_random 4318233 4318394 -4837725 + AluSx SINE Alu 127 293 -19 671 208 61 133 chr1_random 4318394 4318578 -4837541 - LTR49 LTR ERV1 -360 235 78 326 324 17 12 chr1_random 4318809 4318982 -4837137 + MER41B LTR ERV1 258 431 -204 421 153 12 2 chr1_random 4319207 4319286 -4836833 - LTR49 LTR ERV1 -464 121 11 1043 157 36 88 chr1_random 4319288 4319537 -4836582 - MER31B LTR ERV1 -218 248 13 342 111 0 0 chr1_random 4319537 4319591 -4836528 - LTR24C LTR ERV1 0 635 582 2495 128 20 34 chr1_random 4319624 4319831 -4836288 - LTR24C LTR ERV1 -40 595 387 1938 150 0 10 chr1_random 4319831 4320145 -4835974 - AluSx SINE Alu -1 311 1 2495 128 20 34 chr1_random 4320145 4320375 -4835744 - LTR24C LTR ERV1 -248 387 164 1979 100 7 0 chr1_random 4320476 4320757 -4835362 + AluY SINE Alu 17 299 -12 958 126 6 63 chr1_random 4320757 4320856 -4835263 - LTR24C LTR ERV1 -470 165 79 2223 106 3 3 chr1_random 4320856 4321168 -4834951 - AluSp SINE Alu -1 312 1 958 126 6 63 chr1_random 4321168 4321243 -4834876 - LTR24C LTR ERV1 -556 79 1 1343 237 13 68 chr1_random 4321372 4321769 -4834350 + MLT1A2 LTR MaLR 5 374 0 419 281 11 65 chr1_random 4321773 4321898 -4834221 + LTR33 LTR ERVL 344 457 -64 2342 68 0 0 chr1_random 4321898 4322193 -4833926 + AluY SINE Alu 1 295 -16 419 281 11 65 chr1_random 4322193 4322252 -4833867 + LTR33 LTR ERVL 457 518 -3 927 160 0 0 chr1_random 4322280 4322424 -4833695 - MLT1A1 LTR MaLR 0 365 222 1890 112 0 0 chr1_random 4322425 4322692 -4833427 - AluY SINE Alu -44 267 1 799 214 17 40 chr1_random 4322692 4322707 -4833412 - MER72 LTR ERV1 -553 169 155 3636 116 51 39 chr1_random 4322707 4322925 -4833194 - MER51D LTR ERV1 -2 655 441 2199 87 0 3 chr1_random 4322925 4323223 -4832896 - AluY SINE Alu -14 297 1 3636 116 51 39 chr1_random 4323223 4323490 -4832629 - MER51D LTR ERV1 -216 441 158 1945 133 0 23 chr1_random 4323490 4323799 -4832320 - AluSx SINE Alu -10 302 1 3636 116 51 39 chr1_random 4323799 4323959 -4832160 - MER51D LTR ERV1 -499 158 1 799 214 17 40 chr1_random 4323959 4324116 -4832003 - MER72 LTR ERV1 -567 155 1 * 899 148 130 0 chr1_random 4324116 4324278 -4831841 - LTR49 LTR ERV1 -411 184 1 1128 165 41 5 chr1_random 4324282 4324476 -4831643 + MER89 LTR ERV1 357 557 -2 753 179 85 75 chr1_random 4324494 4324812 -4831307 + MER31B LTR ERV1 1 445 -21 561 209 40 54 chr1_random 4324825 4324973 -4831146 + LTR8 LTR ERV1 1 146 -545 2004 159 9 18 chr1_random 4324976 4325316 -4830803 + MER1B DNA MER1_type 1 337 -2 3033 135 52 45 chr1_random 4325321 4325898 -4830221 + LTR8A LTR ERV1 147 727 0 328 298 97 29 chr1_random 4325914 4326152 -4829967 - HAL1 LINE L1 -1811 696 443 3373 117 29 4 chr1_random 4326188 4326674 -4829445 - MER41E LTR ERV1 0 512 15 207 0 0 0 chr1_random 4327063 4327086 -4829033 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 261 341 36 0 chr1_random 4327256 4327394 -4828725 + Charlie4 DNA MER1_type 1815 1957 -4 1367 43 12 0 chr1_random 4327766 4327928 -4828191 + U1 snRNA snRNA 1 164 -1 326 200 77 0 chr1_random 4328361 4328425 -4827694 - MER45B DNA AcHobo -660 380 312 321 245 105 28 chr1_random 4328425 4328568 -4827551 + REP3 LTR ERV 1 154 -408 1046 116 14 4 chr1_random 4329067 4329354 -4826765 + AluSx SINE Alu 59 310 0 198 0 0 0 chr1_random 4329527 4329549 -4826570 + (TC)n Simple_repeat Simple_repeat 1 22 0 665 194 0 23 chr1_random 4330452 4330581 -4825538 + U1 snRNA snRNA 3 128 -37 1774 179 136 72 chr1_random 4330591 4331106 -4825013 + LTR4 LTR ERV1 49 596 0 256 91 0 0 chr1_random 4331106 4331139 -4824980 + U1 snRNA snRNA 133 165 0 691 176 255 94 chr1_random 4331483 4331750 -4824369 - AluJb SINE Alu -1 311 2 228 313 54 9 chr1_random 4332601 4332713 -4823406 + L2 LINE L2 2401 2517 -797 1882 194 78 17 chr1_random 4332767 4333180 -4822939 + LOR1b LTR ERV1 1 438 -23 1419 172 0 0 chr1_random 4333993 4334226 -4821893 + AluSx SINE Alu 1 233 -79 303 93 0 0 chr1_random 4334475 4334518 -4821601 + (TG)n Simple_repeat Simple_repeat 2 44 0 572 212 0 8 chr1_random 4334541 4334659 -4821460 - FLAM_C SINE Alu -16 117 1 2321 66 3 3 chr1_random 4334660 4334962 -4821157 - AluY SINE Alu -8 303 2 835 259 86 38 chr1_random 4335071 4335187 -4820932 + L1MEc LINE L1 1566 1675 -4721 1999 117 0 44 chr1_random 4335187 4335503 -4820616 + AluSg SINE Alu 1 302 -8 835 259 86 38 chr1_random 4335503 4335935 -4820184 + L1MEc LINE L1 1675 2140 -4256 383 0 21 0 chr1_random 4336328 4336375 -4819744 + (CAA)n Simple_repeat Simple_repeat 1 48 0 655 92 0 20 chr1_random 4336708 4336832 -4819287 + AluJb SINE Alu 205 312 0 507 132 0 0 chr1_random 4337436 4337512 -4818607 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 2176 74 3 7 chr1_random 4337521 4337820 -4818299 - AluSc SINE Alu -11 298 1 780 159 45 8 chr1_random 4337954 4338086 -4818033 - AluJo SINE Alu -169 143 7 1120 215 51 55 chr1_random 4338240 4338533 -4817586 - AluJo SINE Alu -10 292 1 513 92 0 0 chr1_random 4338584 4338649 -4817470 - AluSg1 SINE Alu -19 290 226 856 126 126 0 chr1_random 4338649 4338792 -4817327 - AluSg1 SINE Alu -148 161 1 891 196 0 0 chr1_random 4338927 4339090 -4817029 - FRAM SINE Alu -14 162 1 224 191 70 9 chr1_random 4339138 4339253 -4816866 + (TA)n Simple_repeat Simple_repeat 1 122 0 807 171 0 0 chr1_random 4339253 4339376 -4816743 - FLAM_C SINE Alu -10 123 1 1641 186 0 3 chr1_random 4339397 4339692 -4816427 - AluJb SINE Alu -18 294 1 1972 136 0 0 chr1_random 4340829 4341123 -4814996 - AluSx SINE Alu -18 294 1 22 35 0 0 chr1_random 4341557 4341586 -4814533 + AT_rich Low_complexity Low_complexity 1 29 0 1427 178 3 56 chr1_random 4341594 4341914 -4814205 + AluJo SINE Alu 1 303 -9 629 197 0 0 chr1_random 4341943 4342065 -4814054 + AluJo SINE Alu 2 123 -179 406 239 33 0 chr1_random 4342075 4342167 -4813952 + AluJo SINE Alu 180 274 -28 2053 126 3 0 chr1_random 4342287 4342597 -4813522 + AluSx SINE Alu 1 311 -1 1428 198 34 99 chr1_random 4342600 4342727 -4813392 + LTR56 LTR ERV1 9 143 -302 1990 138 0 0 chr1_random 4342727 4343025 -4813094 - AluSx SINE Alu -14 298 1 1428 198 34 99 chr1_random 4343025 4343362 -4812757 + LTR56 LTR ERV1 143 443 -2 3343 171 26 40 chr1_random 4343460 4344140 -4811979 - LTR51 LTR ERV1 0 671 1 2069 118 7 3 chr1_random 4345135 4345441 -4810678 - AluSc SINE Alu -2 307 1 1704 140 4 0 chr1_random 4345858 4346123 -4809996 + AluSg SINE Alu 1 266 -44 180 0 0 0 chr1_random 4346223 4346243 -4809876 + (A)n Simple_repeat Simple_repeat 1 20 0 183 80 0 0 chr1_random 4346278 4346303 -4809816 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 1697 90 0 8 chr1_random 4346303 4346537 -4809582 - AluSg1 SINE Alu -77 232 1 1170 169 4 65 chr1_random 4346899 4347160 -4808959 - AluJo SINE Alu -24 288 44 1845 147 10 0 chr1_random 4347490 4347783 -4808336 + AluSx SINE Alu 1 296 -16 2371 88 0 0 chr1_random 4348256 4348564 -4807555 + AluSc SINE Alu 1 308 -1 319 339 16 16 chr1_random 4348675 4348799 -4807320 + LTR56-int LTR ERV1 4648 4771 -2030 858 242 0 0 chr1_random 4349106 4349259 -4806860 - FRAM SINE Alu -13 153 1 1635 162 4 0 chr1_random 4350010 4350281 -4805838 + AluJb SINE Alu 21 292 -20 755 196 42 18 chr1_random 4350283 4350451 -4805668 + AluJb SINE Alu 136 307 -5 1999 78 26 0 chr1_random 4350553 4350823 -4805296 + AluY SINE Alu 8 284 -27 306 0 0 0 chr1_random 4350823 4350857 -4805262 + (CA)n Simple_repeat Simple_repeat 2 35 0 623 249 70 47 chr1_random 4351047 4351175 -4804944 + LTR56-int LTR ERV1 4776 4900 -223 1965 155 0 0 chr1_random 4351175 4351478 -4804641 - AluJo SINE Alu -7 305 3 623 249 70 47 chr1_random 4351478 4351606 -4804513 + LTR56-int LTR ERV1 4900 5038 -85 1807 200 23 33 chr1_random 4351662 4352092 -4804027 + LTR56 LTR ERV1 20 445 0 238 261 131 0 chr1_random 4352113 4352243 -4803876 + L1ME4a LINE L1 5745 5891 -273 2873 141 7 80 chr1_random 4352258 4352811 -4803308 + LTR8 LTR ERV1 1 513 -178 500 167 0 0 chr1_random 4352823 4352901 -4803218 + LTR8 LTR ERV1 614 691 0 229 224 0 0 chr1_random 4352918 4352967 -4803152 + L1ME4a LINE L1 5901 5949 -213 498 279 21 0 chr1_random 4353447 4353587 -4802532 + Charlie4 DNA MER1_type 1815 1957 -4 1399 37 0 0 chr1_random 4353991 4354155 -4801964 + U1 snRNA snRNA 1 164 -1 324 200 77 0 chr1_random 4354569 4354633 -4801486 - MER45B DNA AcHobo -660 380 312 335 176 92 84 chr1_random 4354633 4354764 -4801355 + REP3 LTR ERV 1 132 -430 310 317 60 49 chr1_random 4355450 4355633 -4800486 + MIR SINE MIR 53 237 -25 850 246 107 49 chr1_random 4355811 4356180 -4799939 + L1ME3 LINE L1 5667 6065 -97 1975 117 6 19 chr1_random 4356247 4356563 -4799556 + AluSx SINE Alu 1 312 0 2095 111 0 3 chr1_random 4356581 4356899 -4799220 + AluSc SINE Alu 1 309 0 296 241 113 30 chr1_random 4356940 4357073 -4799046 + HAL1b LINE L1 971 1114 -234 2348 78 0 0 chr1_random 4357075 4357432 -4798687 - AluY SINE Alu 0 357 1 386 233 0 68 chr1_random 4357477 4357580 -4798539 - L1MC4 LINE L1 -1333 6709 6614 309 229 8 119 chr1_random 4357562 4357680 -4798439 + L1MC4 LINE L1 6614 6718 -1324 * 237 307 55 18 chr1_random 4357725 4357888 -4798231 + HAL1b LINE L1 1180 1348 0 306 241 27 27 chr1_random 4357901 4358013 -4798106 + L1ME4a LINE L1 5967 6078 -43 2174 219 18 91 chr1_random 4358322 4358992 -4797127 - LTR8 LTR ERV1 -14 677 57 259 272 0 78 chr1_random 4358992 4359095 -4797024 - MIR SINE MIR -166 96 2 258 103 0 205 chr1_random 4359102 4359180 -4796939 + LTR8A LTR ERV1 1 62 -665 412 286 86 7 chr1_random 4359183 4359323 -4796796 + MIR SINE MIR 85 235 -27 1754 166 10 0 chr1_random 4359420 4359721 -4796398 + AluSx SINE Alu 1 304 -8 1114 222 61 77 chr1_random 4360051 4360566 -4795553 - MER39 LTR ERV1 0 707 8 812 158 70 12 chr1_random 4360652 4360823 -4795296 + AluJb SINE Alu 1 181 -131 565 63 13 0 chr1_random 4360879 4360958 -4795161 - HY3 scRNA scRNA -1 100 21 248 77 26 0 chr1_random 4361079 4361118 -4795001 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 1960 92 17 20 chr1_random 4361118 4361411 -4794708 - AluSc SINE Alu -2 307 16 534 83 0 0 chr1_random 4362895 4362967 -4793152 - tRNA-Gln-CAG tRNA tRNA -3 72 1 209 108 27 0 chr1_random 4363408 4363445 -4792674 + CT-rich Low_complexity Low_complexity 3 40 0 216 97 0 0 chr1_random 4364526 4364557 -4791562 + (TC)n Simple_repeat Simple_repeat 2 32 0 211 122 41 20 chr1_random 4365502 4365551 -4790568 + CT-rich Low_complexity Low_complexity 3 52 0 5216 189 28 23 chr1_random 4365981 4367567 -4788552 - L1MC2 LINE L1 -6 6338 4749 1219 256 101 5 chr1_random 4367589 4367964 -4788155 - L1MCa LINE L1 -5997 429 19 2085 104 0 0 chr1_random 4367983 4368261 -4787858 + AluSg SINE Alu 1 278 -32 207 0 0 0 chr1_random 4368269 4368292 -4787827 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1053 260 195 19 chr1_random 4368974 4369536 -4786583 - MLT1E2 LTR MaLR 0 593 1 740 241 40 115 chr1_random 4369645 4369994 -4786125 - MLT1E2-int LTR MaLR -88 1283 961 250 277 62 0 chr1_random 4370709 4370839 -4785280 + MIR3 SINE MIR 68 205 -3 284 364 41 8 chr1_random 4371910 4372031 -4784088 - L2 LINE L2 0 3272 3148 1928 129 3 3 chr1_random 4372402 4372688 -4783431 - AluSq SINE Alu -27 286 1 213 39 0 0 chr1_random 4372935 4372961 -4783158 + (CAA)n Simple_repeat Simple_repeat 2 27 0 224 186 105 70 chr1_random 4373058 4373144 -4782975 - L2 LINE L2 -10 3262 3174 195 42 0 0 chr1_random 4373681 4373705 -4782414 + (CAA)n Simple_repeat Simple_repeat 2 25 0 950 284 121 4 chr1_random 4375452 4376008 -4780111 + L1M4 LINE L1 4295 4915 -1231 317 233 62 23 chr1_random 4376133 4376262 -4779857 + L1MA4A LINE L1 5953 6086 -217 1353 177 61 3 chr1_random 4376165 4376459 -4779660 + L1MA4 LINE L1 5984 6294 -6 1728 186 50 154 chr1_random 4376473 4377391 -4778728 + L1 LINE L1 2748 3570 -2576 1706 161 11 7 chr1_random 4377392 4377834 -4778285 + AluSx SINE Alu 4 446 0 2121 135 0 0 chr1_random 4377979 4378283 -4777836 + AluSx SINE Alu 3 306 -6 510 190 89 117 chr1_random 4378600 4378847 -4777272 + LTR56-int LTR ERV1 4635 4874 -249 201 147 0 0 chr1_random 4378878 4378912 -4777207 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 367 202 8 59 chr1_random 4378923 4379042 -4777077 + LTR56-int LTR ERV1 4926 5038 -85 1619 230 41 10 chr1_random 4379092 4379531 -4776588 + LTR56 LTR ERV1 13 437 0 236 234 3 0 chr1_random 4379531 4379601 -4776518 + L1ME4a LINE L1 5746 5816 -346 3799 147 12 62 chr1_random 4379675 4380402 -4775717 + LTR8 LTR ERV1 1 691 0 229 204 0 0 chr1_random 4380418 4380467 -4775652 + L1ME4a LINE L1 5901 5949 -213 395 259 26 0 chr1_random 4380941 4381057 -4775062 + Charlie4 DNA MER1_type 1839 1957 -4 2202 89 3 0 chr1_random 4381064 4381356 -4774763 + AluSx SINE Alu 1 293 -19 670 219 52 0 chr1_random 4381765 4381920 -4774199 + U1 snRNA snRNA 2 164 -1 237 246 118 18 chr1_random 4382413 4382523 -4773596 + REP3 LTR ERV 1 121 -441 696 248 60 39 chr1_random 4382525 4382759 -4773360 + L1ME2 LINE L1 5801 6039 -125 252 255 118 54 chr1_random 4382837 4383041 -4773078 + HAL1b LINE L1 935 1151 -197 292 186 31 10 chr1_random 4383043 4383140 -4772979 + (TA)n Simple_repeat Simple_repeat 1 99 0 235 266 26 26 chr1_random 4383412 4383525 -4772594 + L1ME4a LINE L1 5966 6078 -43 1879 198 94 170 chr1_random 4383833 4384617 -4771502 - LTR8 LTR ERV1 0 727 3 634 243 51 55 chr1_random 4384626 4384861 -4771258 + MIR SINE MIR 2 235 -27 1001 255 37 81 chr1_random 4385276 4385811 -4770308 - MER39 LTR ERV1 0 707 1 670 214 31 62 chr1_random 4385885 4386077 -4770042 + AluJb SINE Alu 2 187 -125 632 39 0 0 chr1_random 4386138 4386216 -4769903 - HY3 scRNA scRNA -1 100 23 546 83 0 0 chr1_random 4387647 4387719 -4768400 - tRNA-Gln-CAG tRNA tRNA -3 72 1 653 137 20 20 chr1_random 4388021 4388167 -4767952 + CT-rich Low_complexity Low_complexity 3 148 0 399 79 53 13 chr1_random 4388203 4388279 -4767840 + CT-rich Low_complexity Low_complexity 2 80 0 1528 156 36 36 chr1_random 4388393 4388668 -4767451 - AluSx SINE Alu -37 275 1 2447 164 35 13 chr1_random 4389161 4389612 -4766507 - LOR1b LTR ERV1 0 461 1 601 143 0 0 chr1_random 4389612 4389703 -4766416 - LOR1b-int LTR ERV1 0 8120 8030 * 1900 87 4 0 chr1_random 4389702 4389955 -4766164 - LOR1-int LTR ERV1 -2056 6064 5811 * 8010 116 40 12 chr1_random 4389944 4391234 -4764885 - LOR1-int LTR ERV1 -2582 5538 4213 924 38 0 0 chr1_random 4391234 4391340 -4764779 + LTR2B LTR ERV1 384 489 -1 2541 103 49 0 chr1_random 4391341 4391710 -4764409 + Harlequin LTR ERV1 1 387 -6509 779 145 21 35 chr1_random 4391694 4391839 -4764280 + HERVE LTR ERV1 255 397 -7416 * 4980 66 12 11 chr1_random 4391819 4392459 -4763660 + HERVE LTR ERV1 263 903 -5993 3557 70 65 2 chr1_random 4392444 4392971 -4763148 + HERVE LTR ERV1 1572 2131 -4765 * 1089 153 6 0 chr1_random 4392976 4393153 -4762966 - LOR1-int LTR ERV1 -3894 4226 4049 506 219 0 0 chr1_random 4393153 4393249 -4762870 + AluJb SINE Alu 38 133 -179 342 182 0 0 chr1_random 4393249 4393315 -4762804 + A-rich Low_complexity Low_complexity 1 66 0 401 116 0 14 chr1_random 4393315 4393384 -4762735 - LOR1-int LTR ERV1 -4058 4062 3995 6707 106 9 11 chr1_random 4393433 4393997 -4762122 - LOR1-int LTR ERV1 -4136 3984 3421 1710 167 22 35 chr1_random 4393997 4394309 -4761810 - AluSx SINE Alu 0 312 5 6707 106 9 11 chr1_random 4394309 4394721 -4761398 - LOR1-int LTR ERV1 -4699 3421 3010 535 267 62 38 chr1_random 4394876 4395144 -4760975 - L1MCc LINE L1 -249 6714 257 1905 156 0 0 chr1_random 4395156 4395444 -4760675 + AluSc SINE Alu 1 288 -21 621 100 0 0 chr1_random 4395445 4395535 -4760584 + (TA)n Simple_repeat Simple_repeat 1 90 0 1823 278 74 36 chr1_random 4396227 4396469 -4759650 + L1ME2 LINE L1 5319 5550 -614 1938 127 7 21 chr1_random 4396469 4396798 -4759321 + AluSx SINE Alu 5 329 0 1823 278 74 36 chr1_random 4396798 4397360 -4758759 + L1ME2 LINE L1 5550 6155 -9 27 29 0 0 chr1_random 4397374 4397408 -4758711 + AT_rich Low_complexity Low_complexity 1 34 0 430 141 0 0 chr1_random 4397849 4397920 -4758199 - tRNA-His-CAC tRNA tRNA -4 71 1 1365 129 5 0 chr1_random 4398380 4398582 -4757537 + AluJb SINE Alu 78 280 -32 189 0 0 0 chr1_random 4398583 4398604 -4757515 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 467 97 56 0 chr1_random 4399210 4399282 -4756837 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 252 266 5 27 chr1_random 4400712 4400818 -4755301 - L1ME LINE L1 -370 5794 5690 2688 194 89 23 chr1_random 4401289 4401909 -4754210 - MER67B LTR ERV1 0 661 1 1105 244 26 17 chr1_random 4402417 4402759 -4753360 + MLT2B1 LTR ERVL 1 423 -97 402 21 0 0 chr1_random 4402759 4402806 -4753313 + (TG)n Simple_repeat Simple_repeat 2 48 0 3429 179 22 78 chr1_random 4403102 4403998 -4752121 - L1MD1 LINE L1 0 6242 5397 244 100 20 100 chr1_random 4404000 4404050 -4752069 - MLT1B LTR MaLR -344 46 1 6161 235 52 30 chr1_random 4404050 4406203 -4749916 - L1MDa LINE L1 -3460 3080 866 261 250 31 0 chr1_random 4407170 4407234 -4748885 - tRNA-Lys-AAG tRNA tRNA -9 67 2 461 153 0 0 chr1_random 4407659 4407731 -4748388 + tRNA-Glu-GAG tRNA tRNA 1 72 -3 322 335 51 6 chr1_random 4407973 4408149 -4747970 - MIR SINE MIR -1 261 78 303 225 0 38 chr1_random 4410217 4410297 -4745822 + L1MEc LINE L1 343 419 -6302 1465 184 0 15 chr1_random 4410331 4410598 -4745521 + AluJb SINE Alu 21 283 -29 447 19 0 0 chr1_random 4410601 4410653 -4745466 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 1427 177 0 8 chr1_random 4410653 4410896 -4745223 + AluSc SINE Alu 1 241 -68 539 274 35 17 chr1_random 4410896 4411126 -4744993 + L1MEc LINE L1 1367 1600 -5121 530 185 108 31 chr1_random 4411139 4411269 -4744850 - FLAM_C SINE Alu -2 141 2 982 252 58 58 chr1_random 4411274 4411628 -4744491 + L1MEc LINE L1 1566 1918 -4803 2531 68 0 3 chr1_random 4411628 4411937 -4744182 + AluY SINE Alu 1 308 -3 982 252 58 58 chr1_random 4411937 4412376 -4743743 + L1MEc LINE L1 1918 2463 -4258 216 67 0 0 chr1_random 4412565 4412595 -4743524 + (GA)n Simple_repeat Simple_repeat 2 31 0 2119 114 0 0 chr1_random 4412598 4412895 -4743224 + AluSc SINE Alu 2 298 -11 663 0 0 0 chr1_random 4413842 4413914 -4742205 + tRNA-His-CAC tRNA tRNA 1 72 -3 1253 240 61 26 chr1_random 4414966 4415533 -4740586 - L1ME LINE L1 -469 5695 5114 217 258 30 0 chr1_random 4415738 4415804 -4740315 + CT-rich Low_complexity Low_complexity 2 69 0 1806 256 50 68 chr1_random 4416099 4417253 -4738866 - L1ME2 LINE L1 -182 5982 4852 1472 166 97 17 chr1_random 4417253 4417542 -4738577 + AluJb SINE Alu 1 312 0 1806 256 50 68 chr1_random 4417542 4417702 -4738417 - L1ME2 LINE L1 -1312 4852 4691 250 197 16 16 chr1_random 4417703 4417764 -4738355 - L1ME3 LINE L1 -53 6109 6049 3629 86 9 2 chr1_random 4417849 4418583 -4737536 + MER11A LTR ERVK 1 976 -290 768 228 49 0 chr1_random 4618583 4618807 -4537312 + MER47A DNA MER2_type 66 300 -66 186 43 0 0 chr1_random 4618901 4618924 -4537195 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 407 176 0 0 chr1_random 4620199 4620273 -4535846 - L1MB3 LINE L1 -72 6111 6038 340 287 21 75 chr1_random 4620414 4620602 -4535517 + MIR SINE MIR 85 262 0 380 284 47 6 chr1_random 4620719 4620888 -4535231 + (CCCTAG)n Simple_repeat Simple_repeat 2 177 0 253 121 0 35 chr1_random 4621126 4621184 -4534935 + (CAGGG)n Simple_repeat Simple_repeat 4 59 0 250 292 50 0 chr1_random 4621208 4621328 -4534791 + (CTAGGG)n Simple_repeat Simple_repeat 6 131 0 238 151 0 84 chr1_random 4621332 4621498 -4534621 + (CAGGG)n Simple_repeat Simple_repeat 5 156 0 435 298 43 0 chr1_random 4621538 4621890 -4534229 + (CTAGGG)n Simple_repeat Simple_repeat 1 367 0 310 247 58 35 chr1_random 4621976 4622150 -4533969 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 214 148 0 68 chr1_random 4622151 4622239 -4533880 + (CAGGG)n Simple_repeat Simple_repeat 1 82 0 295 309 29 29 chr1_random 4622321 4622496 -4533623 + (CTAGGG)n Simple_repeat Simple_repeat 4 178 0 279 139 8 62 chr1_random 4622553 4622682 -4533437 + (CAGGG)n Simple_repeat Simple_repeat 2 123 0 1581 159 7 41 chr1_random 4622886 4623181 -4532938 + AluJo SINE Alu 27 311 -1 341 250 83 76 chr1_random 4623376 4623520 -4532599 + L2 LINE L2 3169 3313 0 445 184 78 10 chr1_random 4623609 4623712 -4532407 - MER45A DNA AcHobo 0 178 69 225 226 0 59 chr1_random 4624574 4624676 -4531443 + G-rich Low_complexity Low_complexity 3 98 0 779 259 103 33 chr1_random 4625773 4626126 -4529993 - HSREP522 Satellite telomeric -171 377 1 4573 222 68 12 chr1_random 4626261 4627553 -4528566 + L1MB3 LINE L1 2785 4148 -1998 2358 118 98 7 chr1_random 4627553 4628012 -4528107 - HSREP522 Satellite telomeric 0 504 4 506 158 67 39 chr1_random 4628032 4628247 -4527872 - TAR1 Satellite telomeric -355 221 1 1044 136 26 0 chr1_random 4628349 4628503 -4527616 + AluSg/x SINE Alu 144 301 -11 5299 66 12 1 chr1_random 4628850 4629531 -4526588 - L1PA6 LINE L1 0 6154 5467 2274 125 0 6 chr1_random 4629721 4630033 -4526086 - AluSg SINE Alu 0 310 1 1709 228 27 27 chr1_random 4630046 4630489 -4525630 - MLT1C LTR MaLR -24 443 1 2468 141 19 61 chr1_random 4630497 4630626 -4525493 + L1MA8 LINE L1 5719 5852 -439 1852 163 7 23 chr1_random 4630626 4630763 -4525356 + AluJb SINE Alu 1 139 -173 1943 104 107 4 chr1_random 4630763 4631033 -4525086 + AluSp SINE Alu 1 298 -15 1852 163 7 23 chr1_random 4631033 4631202 -4524917 + AluJb SINE Alu 139 302 -10 2468 141 19 61 chr1_random 4631202 4631597 -4524522 + L1MA8 LINE L1 5852 6221 -70 3810 111 84 0 chr1_random 4631602 4632241 -4523878 - HSMAR2 DNA Mariner -5 1297 605 1692 234 28 2 chr1_random 4632919 4633354 -4522765 + L1MB3 LINE L1 4829 5274 -872 1295 162 16 4 chr1_random 4633353 4633600 -4522519 - L1MB3 LINE L1 -235 5948 5699 * 4358 154 45 29 chr1_random 4633601 4633638 -4522481 + L1MB3 LINE L1 5263 5298 -885 1973 130 18 0 chr1_random 4633638 4633922 -4522197 + AluSq SINE Alu 1 289 -24 4358 154 45 29 chr1_random 4633922 4634805 -4521314 + L1MB3 LINE L1 5298 6181 -2 579 107 0 0 chr1_random 4634829 4634904 -4521215 + AluJ/FLAM SINE Alu 3 77 -235 223 304 76 0 chr1_random 4634996 4635075 -4521044 + L2 LINE L2 3168 3252 -20 2069 106 14 3 chr1_random 4635207 4635491 -4520628 + AluSp SINE Alu 1 287 -26 394 186 0 0 chr1_random 4635550 4635620 -4520499 + L1MD3 LINE L1 7914 7983 -12 899 162 0 27 chr1_random 4635620 4635768 -4520351 - AluSx SINE Alu -11 298 155 431 136 57 11 chr1_random 4635775 4635863 -4520256 - AluSx SINE Alu -217 95 4 529 249 61 0 chr1_random 4636117 4636282 -4519837 - L1MB3 LINE L1 -210 5973 5799 828 137 16 0 chr1_random 4636289 4636413 -4519706 + BC200 scRNA scRNA 18 143 -57 755 232 6 0 chr1_random 4636413 4636581 -4519538 - L1MB3 LINE L1 -356 5827 5659 448 319 101 58 chr1_random 4637146 4637179 -4518940 + L1M4 LINE L1 2604 2634 -3512 195 47 23 47 chr1_random 4637179 4637222 -4518897 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 448 319 101 58 chr1_random 4637222 4637448 -4518671 + L1M4 LINE L1 2634 2888 -3258 1990 154 0 3 chr1_random 4637448 4637746 -4518373 + AluSx SINE Alu 1 297 -15 448 319 101 58 chr1_random 4637746 4637883 -4518236 + L1M4 LINE L1 2888 3018 -3128 266 322 8 0 chr1_random 4637927 4638048 -4518071 + L1M4 LINE L1 2890 3011 -3135 373 319 85 79 chr1_random 4638126 4638468 -4517651 + L1M4 LINE L1 3120 3463 -2683 21 0 0 0 chr1_random 4638891 4638912 -4517207 + AT_rich Low_complexity Low_complexity 1 21 0 2010 91 0 0 chr1_random 4638912 4639177 -4516942 - L1PA8 LINE L1 -2 6170 5906 670 242 88 89 chr1_random 4639512 4640368 -4515751 + L1MDa LINE L1 1883 2830 -3891 888 274 54 70 chr1_random 4640379 4640880 -4515239 + LTR53 LTR ERVL 20 512 -7 1414 216 22 0 chr1_random 4640975 4641243 -4514876 + AluJo SINE Alu 1 274 -38 393 326 70 12 chr1_random 4641243 4641415 -4514704 + L1MDa LINE L1 2974 3155 -3385 1070 178 22 0 chr1_random 4641800 4641985 -4514134 - MER5A DNA MER1_type 0 189 1 294 271 83 14 chr1_random 4642235 4642379 -4513740 + HAL1b LINE L1 397 550 -798 705 256 41 56 chr1_random 4642405 4642675 -4513444 - L2 LINE L2 -4 3309 3044 2053 138 0 7 chr1_random 4643003 4643335 -4512784 + AluSx SINE Alu 1 312 0 2103 116 7 3 chr1_random 4643575 4643869 -4512250 + AluSq SINE Alu 1 295 -18 324 321 59 27 chr1_random 4643915 4644102 -4512017 + L1MCa LINE L1 2265 2457 -3969 268 284 43 7 chr1_random 4644131 4644272 -4511847 + L1MCa LINE L1 2484 2629 -3797 2475 77 0 0 chr1_random 4644352 4644650 -4511469 + AluY SINE Alu 7 304 -7 367 248 97 62 chr1_random 4644664 4644809 -4511310 + L1MC3 LINE L1 6499 6648 -1137 * 391 264 0 22 chr1_random 4644741 4644832 -4511287 - L1MC4 LINE L1 -1339 6703 6615 607 273 40 11 chr1_random 4644832 4645008 -4511111 + MIR SINE MIR 82 262 0 369 360 47 0 chr1_random 4645191 4645341 -4510778 - L3 LINE CR1 -15 1562 1406 1023 108 0 0 chr1_random 4645364 4645536 -4510583 - AluSx SINE Alu 0 325 154 1275 137 0 49 chr1_random 4645539 4645765 -4510354 + AluJo SINE Alu 97 311 -1 299 287 119 20 chr1_random 4645960 4646061 -4510058 + L2 LINE L2 3169 3279 -34 1220 68 20 0 chr1_random 4646078 4646225 -4509894 - AluSx SINE Alu -163 150 1 195 162 0 0 chr1_random 4646321 4646358 -4509761 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 472 303 103 5 chr1_random 4646369 4646564 -4509555 - L2 LINE L2 0 3313 3100 210 308 62 0 chr1_random 4646824 4646889 -4509230 - L3 LINE CR1 -582 995 927 216 234 0 21 chr1_random 4647290 4647337 -4508782 - MIR SINE MIR -63 145 100 364 266 18 71 chr1_random 4647500 4647669 -4508450 + L2 LINE L2 2305 2464 -850 486 105 42 0 chr1_random 4647707 4647802 -4508317 + (TGGA)n Simple_repeat Simple_repeat 3 101 0 573 191 7 20 chr1_random 4647916 4648068 -4508051 + GA-rich Low_complexity Low_complexity 5 154 0 2104 129 0 10 chr1_random 4648087 4648389 -4507730 + AluSx SINE Alu 1 299 -13 276 235 16 28 chr1_random 4648396 4648539 -4507580 + GA-rich Low_complexity Low_complexity 1 144 -378 2356 108 0 0 chr1_random 4648539 4648844 -4507275 + AluSg SINE Alu 1 305 -5 276 235 16 28 chr1_random 4648844 4648925 -4507194 + GA-rich Low_complexity Low_complexity 144 522 0 2868 121 38 26 chr1_random 4650111 4650617 -4505502 - HSMAR2 DNA Mariner -698 604 93 328 271 115 33 chr1_random 4651131 4651253 -4504866 - MIR SINE MIR -7 255 124 734 129 313 0 chr1_random 4651258 4651405 -4504714 - MER46A DNA MER2_type 0 236 44 198 274 39 0 chr1_random 4651427 4651478 -4504641 - MIR SINE MIR -165 97 45 23 0 0 0 chr1_random 4651735 4651758 -4504361 + AT_rich Low_complexity Low_complexity 1 23 0 862 147 8 0 chr1_random 4652335 4652464 -4503655 + FLAM_A SINE Alu 1 130 -3 196 305 145 55 chr1_random 4652649 4652849 -4503270 - L2 LINE L2 -3035 279 62 1262 171 0 24 chr1_random 4653626 4653837 -4502282 + AluJo SINE Alu 85 290 -22 2010 151 3 13 chr1_random 4654932 4655244 -4500875 + AluJb SINE Alu 1 309 -3 270 280 64 6 chr1_random 4655252 4655409 -4500710 + L1ME4a LINE L1 5956 6121 0 474 253 84 0 chr1_random 4655432 4655610 -4500509 + L1MC4a LINE L1 5674 5866 -1942 846 244 98 98 chr1_random 4655645 4655736 -4500383 + L1ME3A LINE L1 5559 5649 -521 267 103 0 0 chr1_random 4655736 4655775 -4500344 + (CA)n Simple_repeat Simple_repeat 2 40 0 846 244 98 98 chr1_random 4655775 4656295 -4499824 + L1ME3A LINE L1 5648 6170 0 327 261 135 9 chr1_random 4658646 4658757 -4497362 + MIR SINE MIR 64 188 -74 191 270 16 16 chr1_random 4659041 4659104 -4497015 + L2 LINE L2 3204 3266 -6 337 336 26 0 chr1_random 4659267 4659383 -4496736 + (CGTG)n Simple_repeat Simple_repeat 4 122 0 2195 109 0 42 chr1_random 4659682 4659994 -4496125 + AluSg SINE Alu 1 299 -11 248 233 0 11 chr1_random 4661211 4661301 -4494818 + (CA)n Simple_repeat Simple_repeat 2 90 0 214 289 122 11 chr1_random 4661397 4661487 -4494632 - MIR SINE MIR -119 143 44 257 254 0 0 chr1_random 4661487 4661542 -4494577 + Tigger5 DNA MER2_type 9 63 -2260 1697 179 7 14 chr1_random 4661663 4661954 -4494165 + AluJo SINE Alu 4 292 -20 420 284 20 14 chr1_random 4661957 4662091 -4494028 - L1MA6 LINE L1 -18 6282 6145 2142 101 14 3 chr1_random 4662091 4662387 -4493732 - AluSq SINE Alu -14 299 1 420 284 20 14 chr1_random 4662387 4662400 -4493719 - L1MA6 LINE L1 -155 6145 6134 2114 70 3 40 chr1_random 4662754 4663055 -4493064 - AluY SINE Alu -21 290 1 407 273 7 49 chr1_random 4663095 4663238 -4492881 + L1MA9 LINE L1 5995 6131 -181 957 121 57 6 chr1_random 4663444 4663601 -4492518 + FRAM SINE Alu 1 165 -11 354 284 155 0 chr1_random 4663784 4663900 -4492219 + L2 LINE L2 3139 3272 0 326 116 0 0 chr1_random 4664280 4664323 -4491796 + Alu SINE Alu 1 43 -259 1979 134 16 10 chr1_random 4664355 4664661 -4491458 - AluSx SINE Alu -4 308 1 264 59 0 0 chr1_random 4664707 4664741 -4491378 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 993 163 47 0 chr1_random 4664781 4664953 -4491166 + MER5A DNA MER1_type 1 180 -9 2224 118 0 10 chr1_random 4664975 4665271 -4490848 - AluSx SINE Alu -19 293 1 2140 118 0 3 chr1_random 4665739 4666035 -4490084 + AluSg SINE Alu 1 295 -15 31 0 0 43 chr1_random 4666180 4666204 -4489915 + AT_rich Low_complexity Low_complexity 1 24 -20 2251 81 44 0 chr1_random 4666204 4666500 -4489619 + AluY SINE Alu 1 309 -2 31 0 0 43 chr1_random 4666500 4666521 -4489598 + AT_rich Low_complexity Low_complexity 24 44 0 2158 79 31 21 chr1_random 4666789 4667079 -4489040 - AluSg1 SINE Alu -16 293 1 1918 129 45 0 chr1_random 4667079 4667365 -4488754 - AluSx SINE Alu -13 299 1 447 298 151 20 chr1_random 4667745 4668037 -4488082 - L1MC/D LINE L1 -2035 5773 5444 684 186 29 21 chr1_random 4668047 4668187 -4487932 - FLAM_C SINE Alu -1 142 2 1860 160 0 3 chr1_random 4668224 4668518 -4487601 - AluJo SINE Alu -19 293 1 21 36 0 0 chr1_random 4668724 4668752 -4487367 + AT_rich Low_complexity Low_complexity 1 28 0 2252 97 14 0 chr1_random 4669936 4670224 -4485895 - AluSx SINE Alu -19 293 2 2301 94 7 0 chr1_random 4670640 4670939 -4485180 - AluSp SINE Alu -12 301 1 2345 83 0 0 chr1_random 4671346 4671634 -4484485 - AluY SINE Alu -23 288 1 394 323 96 35 chr1_random 4672873 4673186 -4482933 + MLT1K LTR MaLR 179 510 -78 214 202 273 20 chr1_random 4673831 4673930 -4482189 + L2 LINE L2 3143 3266 -6 266 296 28 0 chr1_random 4675070 4675141 -4480978 + MIR3 SINE MIR 86 158 -50 273 220 0 34 chr1_random 4675352 4675411 -4480708 + MIR3 SINE MIR 150 206 -2 544 249 47 30 chr1_random 4676307 4676476 -4479643 - MIR SINE MIR -14 248 77 243 238 288 0 chr1_random 4676602 4676682 -4479437 + MIR SINE MIR 79 181 -81 203 323 0 0 chr1_random 4677031 4677093 -4479026 + L2 LINE L2 3209 3270 -2 1457 161 69 66 chr1_random 4678420 4678768 -4477351 + L1ME2 LINE L1 5806 6154 -10 238 344 42 21 chr1_random 4678848 4678944 -4477175 - L2 LINE L2 -20 3252 3155 538 245 54 73 chr1_random 4678975 4679236 -4476883 + MER112 DNA MER1_type 1 256 0 2186 50 0 8 chr1_random 4679463 4679725 -4476394 + AluY SINE Alu 43 302 -9 255 346 0 30 chr1_random 4680370 4680471 -4475648 + MER5A DNA MER1_type 89 186 -3 346 267 41 46 chr1_random 4681062 4681233 -4474886 + MIR SINE MIR 28 199 -63 2208 120 0 46 chr1_random 4681344 4681669 -4474450 + AluSx SINE Alu 1 310 -2 403 299 172 6 chr1_random 4681801 4681958 -4474161 + MIR SINE MIR 46 228 -34 224 329 0 12 chr1_random 4683689 4683774 -4472345 - MIR SINE MIR -12 250 167 387 60 0 0 chr1_random 4684138 4684188 -4471931 + (TG)n Simple_repeat Simple_repeat 2 51 0 916 272 16 24 chr1_random 4684208 4684462 -4471657 - MIR SINE MIR -9 253 2 1237 119 60 0 chr1_random 4684572 4684773 -4471346 + MER20 DNA MER1_type 2 214 -5 182 179 18 0 chr1_random 4685696 4685752 -4470367 + (TA)n Simple_repeat Simple_repeat 1 57 0 243 267 38 48 chr1_random 4685778 4685883 -4470236 - L1MC4 LINE L1 -1324 6718 6615 229 216 0 0 chr1_random 4685884 4685935 -4470184 + (TA)n Simple_repeat Simple_repeat 2 52 0 1749 243 207 51 chr1_random 4686021 4686314 -4469805 + HAL1 LINE L1 23 269 -2238 2531 54 0 10 chr1_random 4686314 4686612 -4469507 + AluY SINE Alu 1 295 -16 1749 243 207 51 chr1_random 4686612 4687233 -4468886 + HAL1 LINE L1 269 1079 -1428 196 313 75 12 chr1_random 4687336 4687416 -4468703 + L2 LINE L2 3137 3221 -51 359 183 0 47 chr1_random 4688363 4688532 -4467587 + (CCCTG)n Simple_repeat Simple_repeat 2 162 0 181 210 32 0 chr1_random 4688607 4688669 -4467450 + (CCCTAG)n Simple_repeat Simple_repeat 1 64 0 304 143 0 80 chr1_random 4688721 4688896 -4467223 + (CCCTG)n Simple_repeat Simple_repeat 1 161 0 329 115 0 85 chr1_random 4689024 4689189 -4466930 + (CCCTG)n Simple_repeat Simple_repeat 5 155 0 241 320 47 0 chr1_random 4689191 4689319 -4466800 + (CCCTAG)n Simple_repeat Simple_repeat 3 136 0 799 182 23 15 chr1_random 4689749 4689881 -4466238 + AluJo/FLAM SINE Alu 1 133 -169 1424 206 50 17 chr1_random 4689883 4690239 -4465880 + AluJo SINE Alu 1 366 0 324 126 84 28 chr1_random 4690329 4690472 -4465647 + (AGATG)n Simple_repeat Simple_repeat 5 155 0 * 746 98 55 30 chr1_random 4690445 4690845 -4465274 + (AAATG)n Simple_repeat Simple_repeat 1 410 0 791 77 59 30 chr1_random 4690857 4691026 -4465093 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 696 95 66 25 chr1_random 4691042 4691283 -4464836 + (AAATG)n Simple_repeat Simple_repeat 1 251 0 691 98 58 29 chr1_random 4691283 4691457 -4464662 + (AGATG)n Simple_repeat Simple_repeat 1 179 0 487 114 79 13 chr1_random 4691457 4691686 -4464433 + (AAATG)n Simple_repeat Simple_repeat 1 244 0 696 63 101 6 chr1_random 4691727 4691886 -4464233 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 504 113 94 12 chr1_random 4691866 4692026 -4464093 + (AGATG)n Simple_repeat Simple_repeat 2 174 0 * 469 116 64 46 chr1_random 4691990 4692163 -4463956 + (AAATG)n Simple_repeat Simple_repeat 3 178 0 * 796 123 47 6 chr1_random 4692189 4692359 -4463760 + (AAATG)n Simple_repeat Simple_repeat 1 177 0 271 167 37 0 chr1_random 4692359 4692413 -4463706 + (AGATG)n Simple_repeat Simple_repeat 3 58 0 562 52 105 26 chr1_random 4692417 4692570 -4463549 + (AAATG)n Simple_repeat Simple_repeat 4 168 0 525 155 33 39 chr1_random 4692606 4692787 -4463332 + (AAATG)n Simple_repeat Simple_repeat 1 180 0 309 143 66 0 chr1_random 4692828 4692919 -4463200 + (AAATG)n Simple_repeat Simple_repeat 5 101 0 640 108 72 12 chr1_random 4692930 4693096 -4463023 + (AAATG)n Simple_repeat Simple_repeat 5 180 0 31 26 0 0 chr1_random 4693170 4693208 -4462911 + AT_rich Low_complexity Low_complexity 1 38 0 2889 205 28 24 chr1_random 4693850 4694561 -4461558 - L1 LINE L1 -1549 4597 3884 3782 170 3 15 chr1_random 4694563 4695223 -4460896 + L1MA5 LINE L1 5642 6293 -7 205 314 0 0 chr1_random 4695538 4695608 -4460511 + MIR SINE MIR 185 254 -8 1967 153 0 3 chr1_random 4695775 4696070 -4460049 - AluSx SINE Alu -18 294 1 1716 173 10 27 chr1_random 4696442 4696742 -4459377 + AluSp SINE Alu 1 295 -18 24 77 0 0 chr1_random 4697211 4697263 -4458856 + AT_rich Low_complexity Low_complexity 1 52 0 270 297 22 0 chr1_random 4698768 4698859 -4457260 + L2 LINE L2 3216 3308 -5 6618 40 0 4 chr1_random 4699617 4700367 -4455752 - L1PA5 LINE L1 0 6154 5408 830 269 16 20 chr1_random 4701118 4701437 -4454682 + MER34C LTR ERV1 70 430 -155 2355 102 0 3 chr1_random 4702351 4702656 -4453463 - AluSq SINE Alu -9 304 1 297 244 75 44 chr1_random 4703432 4703592 -4452527 - MIR3 SINE MIR -41 167 3 303 93 0 0 chr1_random 4705217 4705260 -4450859 + (TA)n Simple_repeat Simple_repeat 2 44 0 1203 195 57 17 chr1_random 4705471 4705777 -4450342 - MLT1D LTR MaLR 0 505 206 223 349 23 8 chr1_random 4706006 4706138 -4449981 - MIR SINE MIR -126 136 3 209 360 99 0 chr1_random 4706936 4707047 -4449072 + MIR SINE MIR 63 184 -78 373 265 29 0 chr1_random 4707363 4707465 -4448654 + MLT2C1 LTR ERVL 2 106 -291 287 244 23 107 chr1_random 4707499 4707610 -4448509 + MLT2C1 LTR ERVL 237 337 -60 4715 175 25 29 chr1_random 4707610 4708535 -4447584 + MER49 LTR ERV1 1 921 -2 287 244 23 107 chr1_random 4708535 4708554 -4447565 + MLT2C1 LTR ERVL 337 356 -41 887 239 0 0 chr1_random 4708565 4708753 -4447366 + ERVL LTR ERVL 1002 1189 -4575 358 148 20 0 chr1_random 4708755 4708856 -4447263 + (TTGG)n Simple_repeat Simple_repeat 1 103 0 3021 265 33 6 chr1_random 4708863 4709678 -4446441 + ERVL LTR ERVL 1174 2010 -3754 417 286 0 0 chr1_random 4709683 4709788 -4446331 - FLAM_C SINE Alu -28 105 1 2107 90 25 59 chr1_random 4709882 4710061 -4446058 - AluSg SINE Alu 0 310 145 2136 110 7 19 chr1_random 4710061 4710369 -4445750 - AluY SINE Alu -7 304 1 2107 90 25 59 chr1_random 4710369 4710510 -4445609 - AluSg SINE Alu -165 145 1 371 56 0 18 chr1_random 4710936 4711007 -4445112 + Alu SINE Alu 1 49 -253 265 320 20 20 chr1_random 4711019 4711166 -4444953 + T-rich Low_complexity Low_complexity 5 151 0 207 198 12 23 chr1_random 4711173 4711259 -4444860 + CT-rich Low_complexity Low_complexity 5 89 0 231 291 0 26 chr1_random 4711451 4711568 -4444551 + T-rich Low_complexity Low_complexity 5 118 0 2188 119 3 7 chr1_random 4711709 4712012 -4444107 - AluSx SINE Alu -10 302 1 2129 109 18 3 chr1_random 4712024 4712309 -4443810 - AluSc SINE Alu -20 289 1 1537 208 7 7 chr1_random 4712635 4712928 -4443191 - AluJo SINE Alu -19 293 1 955 223 173 47 chr1_random 4712935 4713299 -4442820 - L1MC4 LINE L1 -1 8041 7632 204 294 0 39 chr1_random 4713752 4713854 -4442265 + GA-rich Low_complexity Low_complexity 1 98 0 2330 87 0 0 chr1_random 4714085 4714374 -4441745 - AluSc SINE Alu -19 290 2 2522 84 3 0 chr1_random 4714513 4714821 -4441298 - AluSp SINE Alu -4 309 1 24 32 0 0 chr1_random 4714929 4714960 -4441159 + AT_rich Low_complexity Low_complexity 1 31 0 386 281 102 47 chr1_random 4717874 4718148 -4437971 + LTR16C LTR ERVL 110 398 -93 1492 241 104 13 chr1_random 4718596 4719049 -4437070 + MLT1D LTR MaLR 12 505 0 2882 37 3 6 chr1_random 4719350 4719701 -4436418 - L1PA5 LINE L1 0 6154 5805 266 331 36 43 chr1_random 4719992 4720131 -4435988 + MIR3 SINE MIR 9 146 -62 768 284 100 17 chr1_random 4720490 4720914 -4435205 - MLT1D LTR MaLR 0 505 43 410 0 20 0 chr1_random 4721000 4721050 -4435069 + (TC)n Simple_repeat Simple_repeat 2 52 0 3678 163 54 40 chr1_random 4721127 4721976 -4434143 - MER4D LTR ERV1 0 827 1 438 335 42 11 chr1_random 4724377 4724568 -4431551 - HERVL LTR ERVL -3191 2463 2267 435 320 84 32 chr1_random 4725879 4726226 -4429893 + L2 LINE L2 2451 2815 -499 239 250 21 28 chr1_random 4726982 4727126 -4428993 + GA-rich Low_complexity Low_complexity 1 143 0 1487 234 73 26 chr1_random 4727150 4727855 -4428264 - L1M4 LINE L1 -4994 1548 820 261 326 11 0 chr1_random 4728040 4728129 -4427990 - L1M4 LINE L1 -5842 700 611 1354 56 0 12 chr1_random 4728144 4728304 -4427815 - AluSp SINE Alu -154 159 2 2025 158 0 6 chr1_random 4728311 4728622 -4427497 - AluSx SINE Alu -3 309 1 228 375 17 0 chr1_random 4729677 4729797 -4426322 + L2 LINE L2 2909 3030 -242 237 286 14 0 chr1_random 4729991 4730061 -4426058 + L2 LINE L2 3202 3272 0 187 308 0 0 chr1_random 4730106 4730158 -4425961 - MIR SINE MIR -10 252 201 348 239 48 80 chr1_random 4730260 4730448 -4425671 + L1ME4a LINE L1 5887 6068 -53 264 59 0 0 chr1_random 4730939 4730973 -4425146 + (A)n Simple_repeat Simple_repeat 1 34 0 26 50 0 0 chr1_random 4732007 4732047 -4424072 + AT_rich Low_complexity Low_complexity 1 40 0 496 283 0 0 chr1_random 4734139 4734252 -4421867 - MER81 DNA DNA -1 113 1 2357 87 0 7 chr1_random 4734331 4734630 -4421489 - AluY SINE Alu -14 297 1 2387 70 0 10 chr1_random 4734650 4734950 -4421169 - AluY SINE Alu 0 311 15 189 295 95 21 chr1_random 4735087 4735182 -4420937 - MIR SINE MIR -130 132 31 1068 176 25 15 chr1_random 4735228 4735432 -4420687 - MER20 DNA MER1_type -6 213 8 195 162 0 0 chr1_random 4736456 4736493 -4419626 + A-rich Low_complexity Low_complexity 1 37 0 2394 93 0 3 chr1_random 4738153 4738454 -4417665 + AluSx SINE Alu 1 300 -12 446 219 82 14 chr1_random 4738785 4738931 -4417188 - L1ME4a LINE L1 0 6121 5966 415 286 166 14 chr1_random 4739055 4739272 -4416847 - L1ME4a LINE L1 -360 5761 5512 331 224 54 82 chr1_random 4739300 4739447 -4416672 - L1ME4a LINE L1 -678 5443 5301 478 344 5 11 chr1_random 4739517 4739706 -4416413 + MIR3 SINE MIR 15 202 -6 746 108 0 0 chr1_random 4742599 4742701 -4413418 - LTR12 LTR ERV1 0 714 613 * 1526 84 0 75 chr1_random 4742692 4742918 -4413201 - LTR12 LTR ERV1 -503 211 3 1620 173 10 27 chr1_random 4742959 4743259 -4412860 - AluJo SINE Alu 0 312 18 552 211 14 42 chr1_random 4743262 4743404 -4412715 - AluJo SINE Alu -173 139 2 221 219 0 0 chr1_random 4743694 4743735 -4412384 - L2 LINE L2 -10 3303 3263 243 0 0 0 chr1_random 4743975 4744002 -4412117 + (A)n Simple_repeat Simple_repeat 1 27 0 564 226 231 20 chr1_random 4744736 4744935 -4411184 + MIR SINE MIR 22 262 0 626 203 112 68 chr1_random 4747121 4747163 -4408956 - L1M4 LINE L1 -3428 2718 2679 2456 30 40 14 chr1_random 4747163 4747459 -4408660 + AluY SINE Alu 1 304 -7 626 203 112 68 chr1_random 4747459 4747667 -4408452 - L1M4 LINE L1 -3467 2679 2457 425 80 0 80 chr1_random 4747774 4747912 -4408207 + (GCTG)n Simple_repeat Simple_repeat 4 130 0 373 60 0 60 chr1_random 4747954 4748037 -4408082 + (GCTG)n Simple_repeat Simple_repeat 4 81 0 775 57 0 62 chr1_random 4748068 4748244 -4407875 + (GCTG)n Simple_repeat Simple_repeat 2 166 0 454 65 0 80 chr1_random 4748264 4748402 -4407717 + (GCTG)n Simple_repeat Simple_repeat 2 128 0 708 68 0 75 chr1_random 4748485 4748779 -4407340 + (GCTG)n Simple_repeat Simple_repeat 1 272 0 225 223 58 14 chr1_random 4749019 4749158 -4406961 + (TA)n Simple_repeat Simple_repeat 1 145 0 * 269 227 22 54 chr1_random 4749146 4749331 -4406788 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 * 342 206 46 29 chr1_random 4749204 4749379 -4406740 + (TA)n Simple_repeat Simple_repeat 2 179 0 24 0 0 0 chr1_random 4749438 4749462 -4406657 + AT_rich Low_complexity Low_complexity 1 24 0 1917 130 3 3 chr1_random 4749886 4750171 -4405948 + AluSq SINE Alu 24 308 -5 235 245 33 20 chr1_random 4750658 4750809 -4405310 + (TA)n Simple_repeat Simple_repeat 1 153 0 30 77 0 0 chr1_random 4750881 4750946 -4405173 + AT_rich Low_complexity Low_complexity 1 65 0 316 134 87 7 chr1_random 4750948 4751097 -4405022 + (TA)n Simple_repeat Simple_repeat 2 162 0 260 172 17 0 chr1_random 4751316 4751374 -4404745 + (TA)n Simple_repeat Simple_repeat 2 60 0 26 0 0 0 chr1_random 4751476 4751502 -4404617 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr1_random 4751593 4751613 -4404506 + (TC)n Simple_repeat Simple_repeat 2 21 0 262 261 31 12 chr1_random 4751613 4751774 -4404345 + (TA)n Simple_repeat Simple_repeat 2 165 0 26 0 0 0 chr1_random 4751848 4751874 -4404245 + AT_rich Low_complexity Low_complexity 1 26 0 2199 99 0 0 chr1_random 4751890 4752162 -4403957 + AluSx SINE Alu 12 283 -29 313 259 6 30 chr1_random 4752239 4752405 -4403714 + (TATAA)n Simple_repeat Simple_repeat 5 166 0 241 287 0 33 chr1_random 4752427 4752608 -4403511 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 247 276 29 11 chr1_random 4752577 4752751 -4403368 + (TA)n Simple_repeat Simple_repeat 2 178 0 26 104 0 0 chr1_random 4752787 4752883 -4403236 + AT_rich Low_complexity Low_complexity 1 96 0 26 0 0 0 chr1_random 4753520 4753546 -4402573 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr1_random 4753770 4753806 -4402313 + AT_rich Low_complexity Low_complexity 1 36 0 189 154 0 0 chr1_random 4753910 4753949 -4402170 + (CA)n Simple_repeat Simple_repeat 2 40 0 259 276 37 6 chr1_random 4753990 4754153 -4401966 + (TA)n Simple_repeat Simple_repeat 2 169 0 238 233 20 34 chr1_random 4754219 4754365 -4401754 + (TA)n Simple_repeat Simple_repeat 1 144 0 23 0 0 0 chr1_random 4754365 4754388 -4401731 + AT_rich Low_complexity Low_complexity 1 23 0 330 286 8 0 chr1_random 4754707 4754833 -4401286 + (CA)n Simple_repeat Simple_repeat 2 128 0 417 314 0 6 chr1_random 4754897 4755072 -4401047 + (CA)n Simple_repeat Simple_repeat 1 174 0 2290 92 0 3 chr1_random 4755140 4755435 -4400684 + AluSx SINE Alu 1 294 -18 1112 151 0 0 chr1_random 4755435 4755601 -4400518 + AluSg/x SINE Alu 134 299 -13 284 326 6 6 chr1_random 4755613 4755785 -4400334 + (CA)n Simple_repeat Simple_repeat 1 172 0 257 195 0 11 chr1_random 4755801 4755888 -4400231 + (CA)n Simple_repeat Simple_repeat 1 86 0 381 22 0 0 chr1_random 4757271 4757317 -4398802 + (TTA)n Simple_repeat Simple_repeat 3 48 0 587 176 0 0 chr1_random 4757317 4757419 -4398700 - L1PA16 LINE L1 -25 6141 6040 2341 104 0 0 chr1_random 4757553 4757850 -4398269 + AluSx SINE Alu 1 297 -15 1353 197 14 10 chr1_random 4757959 4758396 -4397723 - L1PA16 LINE L1 -133 6033 5718 894 150 12 12 chr1_random 4758390 4758550 -4397569 - L1PA16 LINE L1 -245 5921 5762 * 955 164 0 6 chr1_random 4758550 4758709 -4397410 - L1PA16 LINE L1 -247 5919 5762 867 171 6 6 chr1_random 4758710 4758868 -4397251 - L1PA16 LINE L1 -248 5918 5761 1704 143 0 67 chr1_random 4758869 4759106 -4397013 - L1PA16 LINE L1 -249 5917 5707 2095 106 7 0 chr1_random 4759106 4759381 -4396738 + AluSx SINE Alu 23 299 -13 1704 143 0 67 chr1_random 4759381 4759472 -4396647 - L1PA16 LINE L1 -459 5707 5611 1774 154 7 118 chr1_random 4759477 4759749 -4396370 - L1PA16 LINE L1 -22 6144 5934 3374 97 2 2 chr1_random 4759749 4760191 -4395928 + L1PA7 LINE L1 5708 6149 -5 1774 154 7 118 chr1_random 4760191 4760341 -4395778 - L1PA16 LINE L1 -232 5934 5769 298 65 0 0 chr1_random 4760338 4760384 -4395735 + L1PA13 LINE L1 5989 6034 -129 * 1960 145 0 0 chr1_random 4760388 4760670 -4395449 + AluSx SINE Alu 1 282 -30 721 131 0 0 chr1_random 4760843 4760942 -4395177 - AluS SINE Alu -213 100 2 290 265 125 44 chr1_random 4760945 4761002 -4395117 - L1MEd LINE L1 -3746 2383 2332 1891 141 18 0 chr1_random 4761002 4761463 -4394656 + AluSx SINE Alu 3 468 0 290 265 125 44 chr1_random 4761463 4761725 -4394394 - L1MEd LINE L1 -3797 2332 2067 838 236 23 27 chr1_random 4761742 4761962 -4394157 - L1ME1 LINE L1 -23 6143 5925 22 35 0 0 chr1_random 4762184 4762213 -4393906 + AT_rich Low_complexity Low_complexity 1 29 0 1666 160 11 18 chr1_random 4762225 4762507 -4393612 + AluJo SINE Alu 1 280 -32 2417 85 0 3 chr1_random 4762593 4762900 -4393219 - AluY SINE Alu -5 306 1 1022 270 189 13 chr1_random 4762902 4763581 -4392538 - L1MEd LINE L1 -4579 1731 896 * 4679 161 29 38 chr1_random 4763576 4764048 -4392071 - L1MB7 LINE L1 0 6184 5709 2298 69 0 10 chr1_random 4764048 4764383 -4391736 - AluY SINE Alu 0 311 1 4679 161 29 38 chr1_random 4764383 4765129 -4390990 - L1MB7 LINE L1 -475 5709 4976 316 330 84 59 chr1_random 4765131 4765404 -4390715 - L1MEd LINE L1 -5242 877 598 240 296 111 0 chr1_random 4766893 4766974 -4389145 - MIR SINE MIR -124 138 49 191 304 29 14 chr1_random 4766989 4767058 -4389061 + L2 LINE L2 3226 3295 -18 2353 99 7 0 chr1_random 4769768 4770072 -4386047 + AluSq SINE Alu 1 306 -7 203 340 191 0 chr1_random 4770221 4770368 -4385751 + L2 LINE L2 2553 2727 -587 2206 199 103 76 chr1_random 4770370 4771067 -4385052 + L1MC4a LINE L1 7093 7808 0 226 376 77 17 chr1_random 4771386 4771503 -4384616 + L2 LINE L2 3100 3223 -49 288 214 95 0 chr1_random 4771637 4771721 -4384398 - MIR3 SINE MIR -9 199 108 22 0 0 0 chr1_random 4772593 4772615 -4383504 + AT_rich Low_complexity Low_complexity 1 22 0 446 273 87 13 chr1_random 4773482 4773632 -4382487 + MIR3 SINE MIR 20 180 -28 * 1569 260 117 17 chr1_random 4773623 4774468 -4381651 + L2 LINE L2 2382 3313 0 194 378 161 4 chr1_random 4774579 4774809 -4381310 + L2 LINE L2 2566 2831 -483 2091 110 13 13 chr1_random 4776162 4776463 -4379656 + AluSx SINE Alu 1 301 -11 306 181 206 26 chr1_random 4776551 4776706 -4379413 + L1ME4a LINE L1 5826 6008 -113 183 162 0 0 chr1_random 4777137 4777174 -4378945 + A-rich Low_complexity Low_complexity 1 37 0 837 243 50 38 chr1_random 4777623 4777862 -4378257 + MIR SINE MIR 2 243 -19 2093 137 0 0 chr1_random 4778049 4778364 -4377755 - AluSx SINE Alu 0 312 1 301 292 113 15 chr1_random 4778695 4778993 -4377126 + L1MC4 LINE L1 7312 7749 -293 368 156 23 39 chr1_random 4779188 4779316 -4376803 + GA-rich Low_complexity Low_complexity 2 127 0 420 152 11 104 chr1_random 4779374 4779484 -4376635 + L1ME3A LINE L1 5672 5771 -397 350 219 16 0 chr1_random 4779484 4779548 -4376571 - MER81 DNA DNA -49 65 1 673 209 34 47 chr1_random 4780106 4780254 -4375865 + FRAM SINE Alu 1 146 -30 315 0 0 0 chr1_random 4780258 4780293 -4375826 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 333 198 43 78 chr1_random 4780303 4780419 -4375700 + L1M4c LINE L1 1496 1607 -4777 * 1109 191 35 23 chr1_random 4780413 4780670 -4375449 + L1ME3A LINE L1 5906 6165 -5 242 271 17 0 chr1_random 4782550 4782609 -4373510 - MER5B DNA MER1_type -62 116 57 229 179 26 77 chr1_random 4782611 4782630 -4373489 - L1MA10 LINE L1 -1 6333 6315 1455 195 48 90 chr1_random 4782630 4783107 -4373012 - L1ME1 LINE L1 -5 6161 5705 2098 181 31 72 chr1_random 4783109 4783624 -4372495 - MLT1D LTR MaLR -11 494 1 1922 208 43 29 chr1_random 4783624 4784267 -4371852 - L1ME1 LINE L1 -458 5708 5055 1377 136 19 9 chr1_random 4985367 4985581 -4170538 + AluY SINE Alu 96 311 0 699 181 41 41 chr1_random 4985587 4985738 -4170381 - AluJo SINE Alu -23 289 136 2262 112 0 13 chr1_random 4985738 4986050 -4170069 - AluY SINE Alu -3 308 1 699 181 41 41 chr1_random 4986050 4986069 -4170050 - AluJo SINE Alu -175 137 119 2250 121 0 0 chr1_random 4986137 4986434 -4169685 - AluSx SINE Alu -15 297 1 2268 105 0 3 chr1_random 4986434 4986729 -4169390 - AluSq SINE Alu -19 294 1 895 176 13 19 chr1_random 4986729 4986888 -4169231 - FRAM SINE Alu -18 158 1 2381 88 0 23 chr1_random 4987292 4987600 -4168519 + AluSq SINE Alu 1 301 -12 1194 158 0 0 chr1_random 4987601 4987778 -4168341 + AluSg/x SINE Alu 134 310 -2 2230 108 0 10 chr1_random 4987792 4988087 -4168032 + AluSx SINE Alu 9 300 -12 252 321 134 0 chr1_random 4988087 4988199 -4167920 + MIR SINE MIR 83 209 -53 209 260 0 27 chr1_random 4988698 4988807 -4167312 + CT-rich Low_complexity Low_complexity 1 106 0 1830 67 74 7 chr1_random 4988808 4989093 -4167026 - MER41-int LTR ERV1 -578 5368 5065 276 356 6 17 chr1_random 4989101 4989278 -4166841 + CT-rich Low_complexity Low_complexity 4 178 0 2244 110 10 0 chr1_random 4989843 4990152 -4165967 - AluSq SINE Alu -1 312 1 257 264 148 52 chr1_random 4990156 4990311 -4165808 + MIR SINE MIR 83 252 -10 209 232 0 73 chr1_random 4992808 4992890 -4163229 + C-rich Low_complexity Low_complexity 3 78 0 22 109 0 0 chr1_random 4992916 4993008 -4163111 + GC_rich Low_complexity Low_complexity 1 92 0 23 0 0 0 chr1_random 4993018 4993041 -4163078 + GC_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr1_random 4993054 4993083 -4163036 + (CGAGG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr1_random 4996127 4996148 -4159971 + GC_rich Low_complexity Low_complexity 1 21 0 210 229 21 0 chr1_random 4998537 4998585 -4157534 + C-rich Low_complexity Low_complexity 4 52 0 1686 150 0 80 chr1_random 4999609 4999922 -4156197 + AluJo SINE Alu 5 292 -20 2140 98 0 63 chr1_random 5000394 5000709 -4155410 + AluSq SINE Alu 13 307 -6 1142 151 0 0 chr1_random 5000709 5000881 -4155238 + AluSg/x SINE Alu 132 303 -7 744 208 10 20 chr1_random 5001165 5001362 -4154757 + AluY SINE Alu 106 300 -11 910 220 0 0 chr1_random 5001415 5001588 -4154531 - FRAM SINE Alu -3 173 1 524 287 20 15 chr1_random 5001804 5001950 -4154169 + L2 LINE L2 2181 2330 -984 2139 107 17 7 chr1_random 5001950 5002250 -4153869 + AluSx SINE Alu 1 303 -9 524 287 20 15 chr1_random 5002250 5002298 -4153821 + L2 LINE L2 2330 2376 -938 333 318 47 16 chr1_random 5002304 5002433 -4153686 + MIR SINE MIR 130 262 0 1879 159 7 7 chr1_random 5002759 5003055 -4153064 + AluJb SINE Alu 1 296 -16 787 245 31 77 chr1_random 5003347 5003674 -4152445 + L2 LINE L2 3002 3313 0 465 276 44 44 chr1_random 5003671 5003874 -4152245 - MIR SINE MIR 0 262 60 * 1037 172 14 42 chr1_random 5004015 5004168 -4151951 + MER3 DNA MER1_type 1 148 -61 1615 158 48 11 chr1_random 5004168 5004441 -4151678 - AluJb SINE Alu -23 289 7 1037 172 14 42 chr1_random 5004441 5004502 -4151617 + MER3 DNA MER1_type 148 209 0 376 331 0 15 chr1_random 5005075 5005211 -4150908 - MER5A DNA MER1_type 0 189 56 203 233 14 41 chr1_random 5007716 5007789 -4148330 + (CGGG)n Simple_repeat Simple_repeat 3 73 0 514 246 16 0 chr1_random 5008288 5008410 -4147709 - MER5B DNA MER1_type 0 178 55 293 272 91 66 chr1_random 5008458 5008629 -4147490 + MIR SINE MIR 11 185 -67 1686 177 13 13 chr1_random 5008735 5009045 -4147074 + AluJb SINE Alu 3 312 0 307 188 0 25 chr1_random 5009049 5009129 -4146990 + GA-rich Low_complexity Low_complexity 3 80 0 460 300 21 0 chr1_random 5009922 5010062 -4146057 + MIR SINE MIR 55 197 -65 2364 103 6 0 chr1_random 5010070 5010381 -4145738 + AluSq SINE Alu 1 313 0 404 247 130 31 chr1_random 5010500 5010662 -4145457 - MIR SINE MIR -50 212 35 407 298 67 11 chr1_random 5010974 5011152 -4144967 - MIR3 SINE MIR -18 190 3 997 186 0 6 chr1_random 5011739 5011906 -4144213 + FRAM SINE Alu 1 164 -12 2206 113 0 0 chr1_random 5011909 5012231 -4143888 + AluSx SINE Alu 1 322 0 3258 129 15 6 chr1_random 5012242 5012785 -4143334 + L1MB3 LINE L1 5595 6142 -41 1254 182 55 17 chr1_random 5012794 5013030 -4143089 + AluJo SINE Alu 55 299 -13 250 100 0 0 chr1_random 5013030 5013070 -4143049 + L1MB4 LINE L1 6133 6172 -8 893 257 44 12 chr1_random 5013229 5013478 -4142641 + MIR SINE MIR 1 257 -5 252 175 16 48 chr1_random 5013827 5013890 -4142229 - AluSp SINE Alu -133 170 110 541 92 0 0 chr1_random 5014088 5014164 -4141955 + Alu SINE Alu 226 301 -8 2426 78 3 0 chr1_random 5014272 5014568 -4141551 + AluSp SINE Alu 1 297 -16 2237 121 3 10 chr1_random 5014759 5015073 -4141046 + AluSx SINE Alu 1 312 0 1588 238 85 37 chr1_random 5015078 5015596 -4140523 + HAL1 LINE L1 202 744 -1763 283 270 12 43 chr1_random 5015993 5016156 -4139963 + HAL1 LINE L1 829 986 -1521 2303 119 7 0 chr1_random 5016156 5016466 -4139653 + AluSx SINE Alu 1 312 0 243 324 144 0 chr1_random 5016467 5016578 -4139541 + MIR SINE MIR 82 208 -54 2198 120 0 0 chr1_random 5016780 5017090 -4139029 - AluSx SINE Alu 0 310 1 10315 94 22 28 chr1_random 5017090 5018526 -4137593 + MER41A-int LTR ERV1 4347 5773 -173 2098 112 20 10 chr1_random 5018526 5018822 -4137297 - AluSq SINE Alu -14 299 1 10315 94 22 28 chr1_random 5018822 5018993 -4137126 + MER41A-int LTR ERV1 5773 5944 -2 952 144 0 0 chr1_random 5018993 5019139 -4136980 + MER41A LTR ERV1 1 146 -408 2121 74 3 17 chr1_random 5019160 5019387 -4136732 + MER41A LTR ERV1 261 485 -69 2381 87 10 3 chr1_random 5019387 5019685 -4136434 - AluY SINE Alu -11 300 1 2121 74 3 17 chr1_random 5019685 5019755 -4136364 + MER41A LTR ERV1 485 554 0 621 326 42 14 chr1_random 5019755 5020086 -4136033 - LTR16A1 LTR ERVL -114 336 3 367 225 50 12 chr1_random 5020229 5020309 -4135810 + L2 LINE L2 3136 3218 -54 226 274 32 16 chr1_random 5020657 5020719 -4135400 + MIR SINE MIR 33 95 -113 843 88 0 0 chr1_random 5020719 5020832 -4135287 + AluSq/x SINE Alu 2 114 -199 1443 78 47 11 chr1_random 5020832 5021023 -4135096 - AluSc SINE Alu -15 294 97 28 29 0 0 chr1_random 5021134 5021169 -4134950 + AT_rich Low_complexity Low_complexity 1 35 0 2043 163 0 0 chr1_random 5021184 5021484 -4134635 - AluSx SINE Alu -8 304 5 2181 109 14 3 chr1_random 5021490 5021784 -4134335 - AluSx SINE Alu -13 299 3 450 222 92 182 chr1_random 5021821 5021932 -4134187 - L1M4 LINE L1 -2214 3932 3813 2274 96 0 20 chr1_random 5021932 5022234 -4133885 - AluSg SINE Alu -14 296 1 450 222 92 182 chr1_random 5022234 5022667 -4133452 - L1M4 LINE L1 -2333 3813 3437 998 142 0 14 chr1_random 5022679 5022827 -4133292 - AluSq SINE Alu -32 281 136 521 333 14 44 chr1_random 5022858 5023203 -4132916 + ERVL LTR ERVL 709 1020 -3976 3197 95 2 11 chr1_random 5023203 5023655 -4132464 - LTR8 LTR ERV1 0 691 244 667 128 77 0 chr1_random 5023655 5023772 -4132347 - AluSg/x SINE Alu -12 298 173 507 314 12 53 chr1_random 5023786 5024031 -4132088 + ERVL LTR ERVL 2401 2635 -2361 180 0 0 0 chr1_random 5024040 5024060 -4132059 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2041 128 4 0 chr1_random 5024065 5024339 -4131780 - AluSx SINE Alu -37 275 1 2433 96 3 0 chr1_random 5024357 5024658 -4131461 - AluSq SINE Alu -11 302 1 1211 287 27 42 chr1_random 5024670 5025453 -4130666 + ERVL LTR ERVL 2643 3451 -2034 255 93 0 0 chr1_random 5025453 5025496 -4130623 + Alu SINE Alu 259 301 -1 1004 311 26 13 chr1_random 5025511 5025893 -4130226 + ERVL LTR ERVL 3485 3871 -1893 918 135 28 7 chr1_random 5026002 5026143 -4129976 + FRAM SINE Alu 1 143 -33 344 299 73 10 chr1_random 5026148 5026354 -4129765 + ERVL LTR ERVL 3659 4213 -1108 799 161 0 0 chr1_random 5026354 5026484 -4129635 + MLT2B3 LTR ERVL 1 130 -424 387 75 0 17 chr1_random 5026505 5026571 -4129548 + MLT2C2 LTR ERVL 408 464 0 702 287 97 26 chr1_random 5026572 5026840 -4129279 + ERVL LTR ERVL 4211 4497 -1267 2150 141 0 3 chr1_random 5026846 5027158 -4128961 + AluSx SINE Alu 1 311 -1 1885 133 14 14 chr1_random 5027257 5027536 -4128583 - AluSq SINE Alu -18 295 17 310 136 20 140 chr1_random 5027536 5027645 -4128474 + AluS SINE Alu 1 65 -238 1849 110 4 19 chr1_random 5027667 5027930 -4128189 - AluSg SINE Alu 0 310 52 1769 211 9 41 chr1_random 5028075 5028539 -4127580 - LTR2 LTR ERV1 0 449 1 2386 94 3 0 chr1_random 5028768 5029067 -4127052 - AluSx SINE Alu -12 300 1 1131 136 23 17 chr1_random 5029076 5029252 -4126867 - AluSg/x SINE Alu -23 287 111 770 151 137 0 chr1_random 5029252 5029391 -4126728 + MER6 DNA MER2_type 61 218 -647 878 191 11 28 chr1_random 5029478 5029656 -4126463 + AluJo SINE Alu 120 294 -18 948 211 4 43 chr1_random 5029656 5029935 -4126184 + AluSq SINE Alu 1 268 -45 378 203 51 13 chr1_random 5030218 5030297 -4125822 - L2 LINE L2 -55 3217 3136 2333 88 10 0 chr1_random 5030306 5030601 -4125518 - AluSp SINE Alu -15 298 1 2319 104 0 19 chr1_random 5030604 5030921 -4125198 - AluSx SINE Alu -1 311 1 263 164 0 30 chr1_random 5030948 5031015 -4125104 - L1M4b LINE L1 -5438 1421 1357 266 152 0 0 chr1_random 5031032 5031078 -4125041 - L1M4b LINE L1 -5487 1372 1327 285 29 0 0 chr1_random 5031121 5031155 -4124964 + (TG)n Simple_repeat Simple_repeat 2 35 0 2117 119 3 23 chr1_random 5031310 5031658 -4124461 - AluSp SINE Alu 0 313 5 1573 178 38 10 chr1_random 5031694 5031987 -4124132 + AluJb SINE Alu 1 301 -11 2161 132 0 0 chr1_random 5031994 5032289 -4123830 + AluSx SINE Alu 1 295 -17 3148 104 8 30 chr1_random 5032303 5032336 -4123783 + LTR15 LTR ERV1 1 33 -460 2418 87 0 3 chr1_random 5032336 5032635 -4123484 + AluY SINE Alu 1 298 -13 3148 104 8 30 chr1_random 5032635 5033099 -4123020 + LTR15 LTR ERV1 33 487 -6 373 341 55 23 chr1_random 5033624 5033844 -4122275 - L1M4b LINE L1 -6622 237 11 25 0 0 0 chr1_random 5033856 5033881 -4122238 + AT_rich Low_complexity Low_complexity 1 25 0 2271 112 7 0 chr1_random 5033886 5034189 -4121930 - AluSx SINE Alu -7 305 1 1502 107 20 3 chr1_random 5034326 5034562 -4121557 + MER4E LTR ERV1 1 395 -388 25 0 0 0 chr1_random 5035819 5035844 -4120275 + AT_rich Low_complexity Low_complexity 1 25 0 1703 137 3 77 chr1_random 5035934 5036234 -4119885 + AluJo SINE Alu 1 278 -34 210 171 0 0 chr1_random 5036234 5036275 -4119844 + GA-rich Low_complexity Low_complexity 4 44 0 808 272 120 45 chr1_random 5036337 5036791 -4119328 + L1MC4a LINE L1 5264 5765 -2043 2413 86 0 0 chr1_random 5036791 5037082 -4119037 + AluSg SINE Alu 1 291 -19 808 272 120 45 chr1_random 5037082 5037160 -4118959 + L1MC4a LINE L1 5765 5836 -1972 672 284 18 18 chr1_random 5037206 5037424 -4118695 + MIR SINE MIR 35 252 -10 2388 85 0 13 chr1_random 5037533 5037840 -4118279 + AluSx SINE Alu 1 303 -9 1628 206 3 7 chr1_random 5037942 5038229 -4117890 - AluJo SINE Alu -22 290 5 836 168 28 0 chr1_random 5038505 5038648 -4117471 + AluJb SINE Alu 145 291 -21 1636 109 149 33 chr1_random 5038648 5038924 -4117195 + AluSg1 SINE Alu 1 308 -1 2146 107 0 10 chr1_random 5038931 5039230 -4116889 + AluSq SINE Alu 1 296 -17 344 331 87 0 chr1_random 5039235 5039362 -4116757 + HAL1 LINE L1 17 154 -2353 21 36 0 0 chr1_random 5039523 5039551 -4116568 + AT_rich Low_complexity Low_complexity 1 28 0 1742 151 13 34 chr1_random 5039554 5039852 -4116267 + AluJo SINE Alu 1 292 -20 2381 99 0 0 chr1_random 5039854 5040182 -4115937 + AluSp SINE Alu 1 328 0 2142 83 0 0 chr1_random 5040204 5040493 -4115626 - MER41A LTR ERV1 -44 510 222 2302 120 0 13 chr1_random 5040714 5041022 -4115097 - AluSq SINE Alu -9 304 1 2073 136 0 13 chr1_random 5041035 5041200 -4114919 - AluSx SINE Alu -14 298 137 2224 108 3 10 chr1_random 5041200 5041507 -4114612 - AluSp SINE Alu -8 305 1 2073 136 0 13 chr1_random 5041507 5041642 -4114477 - AluSx SINE Alu -175 137 2 838 161 13 0 chr1_random 5041685 5041834 -4114285 + L1M4 LINE L1 5545 5695 -479 724 147 0 0 chr1_random 5041839 5041941 -4114178 - AluSp/q SINE Alu -20 293 192 230 75 0 0 chr1_random 5041977 5042017 -4114102 - L1MA8 LINE L1 -6 6285 6246 1303 142 0 10 chr1_random 5042048 5042252 -4113867 + AluY SINE Alu 1 202 -109 415 153 24 47 chr1_random 5042440 5042525 -4113594 - AluSg1 SINE Alu -225 84 2 968 139 7 13 chr1_random 5042535 5042686 -4113433 - FAM SINE Alu -20 165 16 301 108 20 5 chr1_random 5042692 5042751 -4113368 - L1MC/D LINE L1 -435 5739 5688 2145 139 0 0 chr1_random 5042752 5043061 -4113058 + AluSp SINE Alu 1 309 -4 1620 174 4 4 chr1_random 5043073 5043332 -4112787 + AluJb SINE Alu 6 264 -48 1269 158 137 13 chr1_random 5043427 5043661 -4112458 + AluJo SINE Alu 1 263 -49 607 246 8 0 chr1_random 5044052 5044174 -4111945 + FLAM_C SINE Alu 2 124 -19 1466 86 32 0 chr1_random 5044187 5044373 -4111746 + AluSq SINE Alu 5 196 -117 649 225 6 28 chr1_random 5044373 5044551 -4111568 + L1MB5 LINE L1 5910 6083 -91 2224 108 3 10 chr1_random 5044552 5044859 -4111260 + AluSp SINE Alu 1 305 -8 1176 176 9 114 chr1_random 5044862 5045186 -4110933 + AluJb SINE Alu 2 291 -11 440 188 148 20 chr1_random 5045195 5045344 -4110775 - HAL1 LINE L1 -1544 963 796 311 207 85 37 chr1_random 5045408 5045490 -4110629 + L1 LINE L1 4740 4825 -1321 1318 111 6 0 chr1_random 5045565 5045736 -4110383 - AluSq SINE Alu -141 172 1 2167 102 3 0 chr1_random 5045736 5046056 -4110063 - AluSx SINE Alu 0 321 1 1943 161 3 0 chr1_random 5047533 5047824 -4108295 + AluJo SINE Alu 1 292 -20 2443 77 0 10 chr1_random 5047881 5048181 -4107938 + AluY SINE Alu 1 297 -14 866 67 45 15 chr1_random 5048472 5048606 -4107513 + MER30 DNA MER1_type 1 138 -92 2034 117 3 20 chr1_random 5048607 5048906 -4107213 - AluY SINE Alu -12 299 6 2346 84 3 7 chr1_random 5048922 5049218 -4106901 - AluY SINE Alu 0 311 17 1377 230 81 77 chr1_random 5049245 5049721 -4106398 + L1ME3 LINE L1 5564 6044 -118 2382 100 0 0 chr1_random 5049721 5050021 -4106098 + AluSp SINE Alu 2 301 -12 1377 230 81 77 chr1_random 5050021 5050139 -4105980 + L1ME3 LINE L1 6044 6160 -2 2132 120 3 0 chr1_random 5050159 5050467 -4105652 + AluSx SINE Alu 1 309 0 445 167 95 48 chr1_random 5050468 5050594 -4105525 - L1ME3A LINE L1 -147 6023 5892 256 250 0 0 chr1_random 5050635 5050691 -4105428 - MER58 DNA MER1_type -148 67 12 1382 133 0 0 chr1_random 5050699 5050895 -4105224 - AluSg/x SINE Alu -2 310 115 2312 91 0 0 chr1_random 5051038 5051334 -4104785 - AluY SINE Alu -15 296 1 2106 132 7 3 chr1_random 5051578 5051874 -4104245 - AluSx SINE Alu -15 297 1 2525 59 0 7 chr1_random 5051952 5052257 -4103862 - AluY SINE Alu -8 303 1 3615 101 8 4 chr1_random 5052371 5052877 -4103242 - MER75 DNA T2_type -4 510 3 2317 104 0 0 chr1_random 5052961 5053258 -4102861 - AluSq SINE Alu -16 297 1 241 35 0 0 chr1_random 5054346 5054375 -4101744 + LTR6A LTR ERV1 73 101 -463 25 31 0 0 chr1_random 5054573 5054605 -4101514 + AT_rich Low_complexity Low_complexity 1 32 0 1466 186 44 44 chr1_random 5054694 5055507 -4100612 - SVA Other Other -538 848 462 1820 189 0 3 chr1_random 5055589 5055886 -4100233 - AluJb SINE Alu -16 296 1 639 258 41 22 chr1_random 5055925 5056192 -4099927 + L1M4 LINE L1 4899 5170 -976 317 130 0 0 chr1_random 5056229 5056275 -4099844 - MER66A LTR ERV1 -140 338 293 1856 132 52 7 chr1_random 5056457 5056744 -4099375 + AluSq SINE Alu 3 302 -11 29 47 0 0 chr1_random 5056775 5056818 -4099301 + AT_rich Low_complexity Low_complexity 1 43 0 2482 79 0 0 chr1_random 5056857 5057160 -4098959 + AluSg SINE Alu 1 303 -7 216 0 0 0 chr1_random 5057160 5057184 -4098935 + (TA)n Simple_repeat Simple_repeat 2 25 0 505 259 93 0 chr1_random 5057184 5057292 -4098827 - FLAM_A SINE Alu -14 119 2 340 65 0 0 chr1_random 5057319 5057365 -4098754 + AluJb SINE Alu 87 132 -170 981 146 51 0 chr1_random 5057399 5057557 -4098562 + AluJb SINE Alu 129 294 -18 2175 138 0 0 chr1_random 5057607 5057896 -4098223 - AluSq SINE Alu -24 289 1 2312 96 36 0 chr1_random 5058108 5058426 -4097693 - AluSq SINE Alu 0 329 1 2012 136 3 0 chr1_random 5059947 5060234 -4095885 + AluSx SINE Alu 1 288 -24 1730 82 0 5 chr1_random 5060249 5060468 -4095651 - AluSq SINE Alu -95 218 1 195 42 0 0 chr1_random 5061319 5061343 -4094776 + (T)n Simple_repeat Simple_repeat 1 24 0 1941 92 29 4 chr1_random 5062558 5062830 -4093289 - AluSq SINE Alu -1 312 34 1035 56 56 0 chr1_random 5063025 5063168 -4092951 - L1PB2 LINE L1 0 6151 6001 210 37 0 0 chr1_random 5063707 5063734 -4092385 + (A)n Simple_repeat Simple_repeat 1 27 0 188 188 0 88 chr1_random 5065452 5065532 -4090587 + GA-rich Low_complexity Low_complexity 5 77 0 430 229 42 69 chr1_random 5065831 5065975 -4090144 + MIR SINE MIR 8 147 -115 2326 109 3 0 chr1_random 5066003 5066305 -4089814 + AluSx SINE Alu 1 303 -9 2445 87 3 3 chr1_random 5066305 5066614 -4089505 + AluSp SINE Alu 1 309 -4 1113 122 174 136 chr1_random 5066700 5066987 -4089132 + AluJo SINE Alu 1 298 -4 2278 100 7 3 chr1_random 5067043 5067343 -4088776 + AluSg SINE Alu 2 302 -8 23 54 0 0 chr1_random 5069022 5069059 -4087060 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr1_random 5069727 5069754 -4086365 + AT_rich Low_complexity Low_complexity 1 27 0 891 154 0 0 chr1_random 5074146 5074269 -4081850 - FLAM_A SINE Alu -10 123 1 2062 127 0 10 chr1_random 5075004 5075296 -4080823 + AluSg1 SINE Alu 1 289 -20 1575 184 7 36 chr1_random 5076221 5076526 -4079593 + AluJo SINE Alu 1 296 -16 215 222 0 22 chr1_random 5076630 5076675 -4079444 + (CA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr1_random 5076788 5076809 -4079310 + AT_rich Low_complexity Low_complexity 1 21 0 716 207 165 43 chr1_random 5076809 5076997 -4079122 - MER8 DNA MER2_type 0 239 29 1723 202 0 7 chr1_random 5077849 5078141 -4077978 - AluJo SINE Alu -22 290 1 2324 56 45 3 chr1_random 5080824 5081112 -4075007 + AluY SINE Alu 1 300 -11 2224 107 0 3 chr1_random 5081196 5081486 -4074633 + AluSg SINE Alu 3 291 -19 2013 133 4 0 chr1_random 5081637 5081915 -4074204 + AluSq SINE Alu 1 279 -34 2259 113 3 0 chr1_random 5081915 5082217 -4073902 + AluSx SINE Alu 1 303 -9 2173 113 3 3 chr1_random 5082221 5082514 -4073605 + AluSq SINE Alu 1 293 -20 900 144 0 0 chr1_random 5082516 5082641 -4073478 - AluJo/FLAM SINE Alu -187 125 1 2155 118 24 3 chr1_random 5083628 5083924 -4072195 - AluSx SINE Alu -10 302 1 796 173 135 11 chr1_random 5084014 5084144 -4071975 + MER6B DNA MER2_type 3 164 -701 1479 193 52 0 chr1_random 5084144 5084413 -4071706 + AluJb SINE Alu 1 283 -29 796 173 135 11 chr1_random 5084413 5084467 -4071652 + MER6B DNA MER2_type 164 210 0 186 43 0 0 chr1_random 5084608 5084631 -4071488 + (T)n Simple_repeat Simple_repeat 1 23 0 836 207 16 27 chr1_random 5084654 5084842 -4071277 - AluJo SINE Alu -126 186 1 441 210 265 35 chr1_random 5085380 5085580 -4070539 + MIR SINE MIR 3 248 -14 2430 66 0 0 chr1_random 5085657 5085961 -4070158 - AluY SINE Alu -7 304 1 2292 94 3 0 chr1_random 5086229 5086538 -4069581 + AluSq SINE Alu 1 310 -3 798 237 0 0 chr1_random 5086757 5086913 -4069206 - FRAM SINE Alu -10 156 1 1273 120 0 0 chr1_random 5087226 5087409 -4068710 + AluSg/x SINE Alu 111 293 -17 945 162 0 0 chr1_random 5087456 5087610 -4068509 + AluSg/x SINE Alu 137 290 -22 345 282 47 0 chr1_random 5087610 5087695 -4068424 - L1MC4 LINE L1 -1340 6702 6614 2573 168 64 4 chr1_random 5087701 5088172 -4067947 + MER4E LTR ERV1 281 779 0 642 269 44 59 chr1_random 5088172 5088463 -4067656 - L1MC/D LINE L1 -527 5637 5348 10508 33 4 103 chr1_random 5088585 5090114 -4066005 - SVA Other Other 0 1386 9 23 0 0 0 chr1_random 5090267 5090290 -4065829 + AT_rich Low_complexity Low_complexity 1 23 0 1722 146 18 4 chr1_random 5090290 5090565 -4065554 - AluJb SINE Alu -33 279 1 2241 100 0 0 chr1_random 5090570 5090871 -4065248 - AluSp SINE Alu -12 301 1 2692 78 50 3 chr1_random 5091000 5091360 -4064759 + MER51B LTR ERV1 1 377 0 1973 122 0 48 chr1_random 5091464 5091776 -4064343 + AluSg SINE Alu 1 297 -13 2783 143 36 76 chr1_random 5091847 5091915 -4064204 - L1MA8 LINE L1 -107 6184 6115 1925 129 3 3 chr1_random 5091915 5092210 -4063909 - AluSx SINE Alu -17 295 1 2783 143 36 76 chr1_random 5092210 5092522 -4063597 - L1MA8 LINE L1 -176 6115 5834 729 198 0 0 chr1_random 5092522 5092648 -4063471 - FLAM_A SINE Alu -7 126 1 2783 143 36 76 chr1_random 5092648 5092855 -4063264 - L1MA8 LINE L1 -457 5834 5620 225 206 79 0 chr1_random 5092854 5092917 -4063202 - HAL1 LINE L1 -965 1542 1475 * 327 27 0 0 chr1_random 5092936 5092973 -4063146 - MER4E LTR ERV1 -77 689 653 466 271 64 7 chr1_random 5092985 5093125 -4062994 - HAL1 LINE L1 -1046 1461 1314 1783 142 21 3 chr1_random 5093125 5093413 -4062706 + AluJb SINE Alu 1 293 -19 807 193 55 79 chr1_random 5093424 5093664 -4062455 + MER20B DNA MER1_type 62 297 -486 2197 106 0 0 chr1_random 5093664 5093967 -4062152 - AluSx SINE Alu -9 303 1 807 193 55 79 chr1_random 5093967 5093980 -4062139 + MER20B DNA MER1_type 297 309 -474 823 143 0 8 chr1_random 5093980 5094106 -4062013 - FLAM_C SINE Alu -18 125 1 2156 92 0 0 chr1_random 5094123 5094436 -4061683 - AluSx SINE Alu 0 313 1 411 271 71 25 chr1_random 5094438 5094653 -4061466 - L1M4c LINE L1 -2579 4065 3805 1985 136 7 7 chr1_random 5094653 5094963 -4061156 - AluSx SINE Alu 0 312 3 411 271 71 25 chr1_random 5094963 5095076 -4061043 - L1M4c LINE L1 -2839 3805 3699 534 187 0 0 chr1_random 5095133 5095224 -4060895 - U6 snRNA snRNA 0 107 17 311 186 71 0 chr1_random 5095267 5095337 -4060782 - L1M4 LINE L1 -4886 1656 1582 813 120 0 0 chr1_random 5095337 5095454 -4060665 - AluSc SINE Alu -11 298 182 629 223 5 59 chr1_random 5095459 5095581 -4060538 - L1M4c LINE L1 -2976 3668 3562 2039 126 3 22 chr1_random 5095581 5095898 -4060221 - AluSx SINE Alu -1 311 1 629 223 5 59 chr1_random 5095898 5095995 -4060124 - L1M4c LINE L1 -3082 3562 3461 1165 122 0 41 chr1_random 5095997 5096194 -4059925 - AluSg/x SINE Alu -2 310 122 198 0 0 0 chr1_random 5096196 5096218 -4059901 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2232 78 0 0 chr1_random 5096218 5096499 -4059620 - AluY SINE Alu -30 281 1 2070 103 0 7 chr1_random 5096505 5096797 -4059322 - AluSx SINE Alu -22 290 1 300 122 0 0 chr1_random 5096803 5096852 -4059267 - AluSg/x SINE Alu -169 131 83 769 193 0 21 chr1_random 5096857 5096997 -4059122 - AluJo SINE Alu -174 138 2 427 206 62 41 chr1_random 5097002 5097148 -4058971 - L1M4c LINE L1 -4785 1861 1713 542 176 0 0 chr1_random 5097280 5097371 -4058748 - U6 snRNA snRNA 0 107 17 1321 233 66 78 chr1_random 5097414 5097490 -4058629 - L1M4c LINE L1 -4886 1656 1581 2093 113 3 0 chr1_random 5097490 5097781 -4058338 - AluSc SINE Alu -17 292 1 1321 233 66 78 chr1_random 5097781 5097911 -4058208 - L1M4c LINE L1 -4961 1581 1451 1903 148 10 6 chr1_random 5097911 5098222 -4057897 - AluJb SINE Alu 0 312 1 1321 233 66 78 chr1_random 5098222 5098542 -4057577 - L1M4c LINE L1 -5091 1451 1135 1905 93 104 0 chr1_random 5098546 5098826 -4057293 - AluY SINE Alu 0 311 3 975 179 0 18 chr1_random 5098843 5099011 -4057108 - FRAM SINE Alu -1 165 1 201 333 11 0 chr1_random 5099182 5099272 -4056847 + CT-rich Low_complexity Low_complexity 5 95 0 209 254 36 0 chr1_random 5099743 5099798 -4056321 - MIR SINE MIR -121 87 31 2050 72 27 20 chr1_random 5100657 5100949 -4055170 - AluY SINE Alu -12 299 6 1432 191 142 108 chr1_random 5101167 5101364 -4054755 + MER21B LTR ERV1 1 190 -741 1873 108 39 0 chr1_random 5101364 5101643 -4054476 + AluSq SINE Alu 1 290 -23 1432 191 142 108 chr1_random 5101643 5101928 -4054191 + MER21B LTR ERV1 190 464 -467 1841 107 59 21 chr1_random 5101928 5102218 -4053901 + AluSx SINE Alu 1 301 -11 1432 191 142 108 chr1_random 5102218 5102407 -4053712 + MER21B LTR ERV1 464 787 -144 2284 84 0 0 chr1_random 5102831 5103128 -4052991 + AluSx SINE Alu 6 302 -10 2267 100 6 0 chr1_random 5105197 5105508 -4050611 + AluSq SINE Alu 1 313 0 238 324 54 14 chr1_random 5106824 5106898 -4049221 - L3 LINE CR1 -9 1568 1492 195 42 0 0 chr1_random 5107330 5107354 -4048765 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2317 106 0 0 chr1_random 5107544 5107856 -4048263 + AluSx SINE Alu 1 312 0 327 247 213 35 chr1_random 5109104 5109278 -4046841 + MIR SINE MIR 6 210 -52 1570 192 7 3 chr1_random 5110088 5110380 -4045739 + AluJo SINE Alu 4 296 -16 1545 168 16 20 chr1_random 5110685 5110822 -4045297 + AluJo SINE Alu 1 137 -175 1860 91 0 0 chr1_random 5110822 5111065 -4045054 + AluSx SINE Alu 48 290 -22 1545 168 16 20 chr1_random 5111065 5111230 -4044889 + AluJo SINE Alu 137 302 -10 189 154 0 0 chr1_random 5111392 5111431 -4044688 + A-rich Low_complexity Low_complexity 4 42 0 2093 99 0 7 chr1_random 5112180 5112502 -4043617 - AluSx SINE Alu 0 324 5 298 126 25 13 chr1_random 5112502 5112566 -4043553 - Alu SINE Alu -261 40 1 246 32 0 0 chr1_random 5112902 5112933 -4043186 + (CA)n Simple_repeat Simple_repeat 2 32 0 2132 108 0 16 chr1_random 5112962 5113269 -4042850 + AluSg SINE Alu 1 302 -8 2158 102 3 3 chr1_random 5113270 5113574 -4042545 + AluSx SINE Alu 1 304 -8 1371 219 6 28 chr1_random 5113579 5113898 -4042221 + AluJb SINE Alu 1 312 0 2108 107 10 0 chr1_random 5114239 5114538 -4041581 - AluSc SINE Alu -7 302 1 304 269 71 0 chr1_random 5114619 5114760 -4041359 + L1MC4 LINE L1 7726 7876 -166 1104 178 56 0 chr1_random 5114770 5114984 -4041135 + L1MB4 LINE L1 5741 5966 -214 1918 157 0 0 chr1_random 5114984 5115296 -4040823 + AluSx SINE Alu 1 312 0 838 173 50 0 chr1_random 5115296 5115435 -4040684 + AluJo/FRAM SINE Alu 137 282 -30 1736 121 37 4 chr1_random 5116290 5116563 -4039556 + AluSx SINE Alu 13 294 -18 954 148 12 0 chr1_random 5116563 5116725 -4039394 + AluSq SINE Alu 134 297 -16 1400 191 40 0 chr1_random 5116821 5117116 -4039003 + AluJb SINE Alu 1 306 0 841 97 0 0 chr1_random 5117531 5117644 -4038475 - AluSq/x SINE Alu -199 113 1 342 130 0 0 chr1_random 5117645 5117691 -4038428 - Alu SINE Alu -14 287 242 1969 109 15 0 chr1_random 5117691 5117997 -4038122 + AluSx SINE Alu 6 315 0 458 250 42 48 chr1_random 5118415 5118583 -4037536 - Zaphod DNA AcHobo -3845 186 20 313 261 85 46 chr1_random 5118623 5118776 -4037343 - L2 LINE L2 -431 2883 2725 2244 103 0 0 chr1_random 5119306 5119606 -4036513 - AluSq SINE Alu -13 300 1 299 270 12 43 chr1_random 5119606 5119769 -4036350 - HAL1 LINE L1 -1521 986 829 1644 235 93 44 chr1_random 5120114 5120684 -4035435 - HAL1 LINE L1 -1708 799 202 2071 121 3 10 chr1_random 5120689 5121003 -4035116 - AluSx SINE Alu 0 312 1 2271 78 3 0 chr1_random 5121194 5121490 -4034629 - AluSp SINE Alu -16 297 1 568 92 0 0 chr1_random 5121598 5121674 -4034445 - Alu SINE Alu -8 304 229 2192 74 14 7 chr1_random 5121901 5122197 -4033922 + AluSg1 SINE Alu 1 298 -11 229 94 0 0 chr1_random 5122317 5122349 -4033770 - MLT2B1 LTR ERVL 0 464 433 194 183 58 0 chr1_random 5122364 5122484 -4033635 + (TA)n Simple_repeat Simple_repeat 2 128 0 26 64 0 0 chr1_random 5122499 5122546 -4033573 + AT_rich Low_complexity Low_complexity 1 47 0 674 213 65 115 chr1_random 5122546 5122891 -4033228 - MLT2B1 LTR ERVL -74 446 85 1924 120 3 33 chr1_random 5122891 5123083 -4033036 - AluSx SINE Alu -19 293 112 2212 104 0 3 chr1_random 5123083 5123390 -4032729 + AluSg SINE Alu 1 306 -4 1924 120 3 33 chr1_random 5123390 5123498 -4032621 - AluSx SINE Alu -200 112 2 1799 149 13 29 chr1_random 5123498 5123813 -4032306 - AluJb SINE Alu -2 310 1 674 213 65 115 chr1_random 5123813 5123846 -4032273 - MLT2B1 LTR ERVL -434 86 79 2230 109 0 0 chr1_random 5123846 5124150 -4031969 + AluSx SINE Alu 1 304 -8 674 213 65 115 chr1_random 5124150 5124162 -4031957 - MLT2B1 LTR ERVL -441 79 68 1312 189 89 7 chr1_random 5124225 5124365 -4031754 - AluJo SINE Alu -15 297 170 1352 179 90 0 chr1_random 5124365 5124644 -4031475 - AluJo SINE Alu -7 305 2 1312 189 89 7 chr1_random 5124644 5124773 -4031346 - AluJo SINE Alu -142 170 6 292 205 123 97 chr1_random 5124837 5125032 -4031087 + LTR33A LTR ERVL 57 256 -267 2173 103 3 0 chr1_random 5125240 5125551 -4030568 + AluSx SINE Alu 1 312 0 858 137 0 14 chr1_random 5125557 5125696 -4030423 + AluSg/x SINE Alu 119 255 -55 568 210 68 83 chr1_random 5125842 5126047 -4030072 - MER20B DNA MER1_type -520 263 62 1763 147 15 0 chr1_random 5126058 5126330 -4029789 - AluJb SINE Alu -19 293 18 2084 114 0 16 chr1_random 5126409 5126717 -4029402 + AluSq SINE Alu 1 303 -10 1916 141 0 7 chr1_random 5126866 5127164 -4028955 - AluJb SINE Alu -16 296 1 774 161 0 29 chr1_random 5127208 5127345 -4028774 - FLAM_C SINE Alu 0 133 1 369 44 0 0 chr1_random 5127377 5127422 -4028697 + MER41A LTR ERV1 397 441 -113 491 144 189 0 chr1_random 5127464 5127554 -4028565 - FLAM_C SINE Alu -35 108 2 277 286 9 29 chr1_random 5127556 5127661 -4028458 + LTR16A1 LTR ERVL 355 457 0 706 186 0 8 chr1_random 5127742 5127860 -4028259 + FLAM_C SINE Alu 3 119 -24 387 0 0 0 chr1_random 5127861 5127904 -4028215 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1893 120 4 7 chr1_random 5127970 5128245 -4027874 - AluSx SINE Alu -37 275 2 639 308 102 31 chr1_random 5128266 5128588 -4027531 - LTR16A1 LTR ERVL -96 361 17 2219 69 3 10 chr1_random 5128627 5128916 -4027203 - AluSg1 SINE Alu -14 295 9 1116 147 0 0 chr1_random 5128930 5129107 -4027012 - AluSg/x SINE Alu -2 310 134 2257 84 0 23 chr1_random 5129108 5129416 -4026703 - AluSq SINE Alu -12 301 1 263 279 68 101 chr1_random 5129582 5129819 -4026300 - HERV16 LTR ERVL -438 5326 5098 804 175 14 0 chr1_random 5129820 5129963 -4026156 + FRAM SINE Alu 1 145 -31 2113 105 0 3 chr1_random 5129979 5130274 -4025845 + AluSq SINE Alu 1 294 -19 2194 110 0 0 chr1_random 5130274 5130575 -4025544 + AluSx SINE Alu 1 301 -11 1957 104 43 4 chr1_random 5130578 5130857 -4025262 + AluSq SINE Alu 6 295 -18 1990 141 0 3 chr1_random 5130956 5131268 -4024851 - AluSx SINE Alu -1 311 1 714 287 97 26 chr1_random 5131274 5131542 -4024577 - HERV16 LTR ERVL -1267 4497 4211 407 75 0 17 chr1_random 5131543 5131609 -4024510 - MLT2C2 LTR ERVL 0 464 408 826 161 0 0 chr1_random 5131630 5131760 -4024359 - MLT2B3 LTR ERVL -424 130 1 347 286 75 8 chr1_random 5131761 5131944 -4024175 - HERV16 LTR ERVL -1121 3875 3681 843 135 28 7 chr1_random 5131971 5132112 -4024007 - FRAM SINE Alu -33 143 1 1412 268 74 99 chr1_random 5132212 5132619 -4023500 - HERV16 LTR ERVL -1877 3887 3472 267 93 0 0 chr1_random 5132619 5132662 -4023457 - Alu SINE Alu -1 301 259 1412 268 74 99 chr1_random 5132662 5133456 -4022663 - HERV16 LTR ERVL -2292 3472 2652 2433 96 3 0 chr1_random 5133456 5133757 -4022362 + AluSq SINE Alu 1 302 -11 2041 128 4 0 chr1_random 5133775 5134049 -4022070 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr1_random 5134054 5134074 -4022045 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 545 314 16 54 chr1_random 5134083 5134341 -4021778 - HERV16 LTR ERVL -2361 2635 2388 667 128 77 0 chr1_random 5134342 5134459 -4021660 + AluSg/x SINE Alu 175 300 -12 3197 95 2 11 chr1_random 5134459 5134911 -4021208 + LTR8 LTR ERV1 244 691 0 521 333 14 44 chr1_random 5134911 5135256 -4020863 - HERV16 LTR ERVL -3976 1020 709 988 147 0 39 chr1_random 5135287 5135428 -4020691 + FRAM SINE Alu 1 136 -176 2127 90 49 57 chr1_random 5135428 5135578 -4020541 + THE1B LTR MaLR 1 151 -213 2085 140 0 3 chr1_random 5135578 5135885 -4020234 - AluSq SINE Alu -7 306 1 2127 90 49 57 chr1_random 5135885 5136101 -4020018 + THE1B LTR MaLR 151 364 0 988 147 0 39 chr1_random 5136101 5136115 -4020004 + FRAM SINE Alu 136 149 -27 474 18 0 0 chr1_random 5136115 5136170 -4019949 + (CA)n Simple_repeat Simple_repeat 2 56 0 189 0 0 0 chr1_random 5136169 5136190 -4019929 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 708 271 55 51 chr1_random 5136200 5136473 -4019646 - HERV16 LTR ERVL -4362 634 361 929 143 14 0 chr1_random 5136498 5136645 -4019474 - AluSq SINE Alu 0 313 165 413 214 0 2 chr1_random 5136645 5136735 -4019384 - AluSq SINE Alu -229 74 1 2366 85 10 0 chr1_random 5136749 5137044 -4019075 + AluSp SINE Alu 1 298 -15 378 203 51 13 chr1_random 5137053 5137132 -4018987 + L2 LINE L2 3136 3217 -55 2344 81 3 3 chr1_random 5137302 5137600 -4018519 - AluSc SINE Alu -11 298 1 325 367 35 12 chr1_random 5137796 5137852 -4018267 + MIR SINE MIR 36 89 -173 2108 142 6 3 chr1_random 5137852 5138163 -4017956 + AluSx SINE Alu 1 312 0 325 367 35 12 chr1_random 5138163 5138275 -4017844 + MIR SINE MIR 89 208 -54 2121 111 0 0 chr1_random 5138477 5138775 -4017344 - AluSx SINE Alu 0 310 13 1323 48 0 0 chr1_random 5138782 5138949 -4017170 - MER11B LTR ERVK -1069 167 1 349 319 0 39 chr1_random 5139280 5139462 -4016657 + CT-rich Low_complexity Low_complexity 4 178 0 2322 104 0 7 chr1_random 5140070 5140377 -4015742 - AluSx SINE Alu -7 305 1 21 0 0 0 chr1_random 5140605 5140626 -4015493 + AT_rich Low_complexity Low_complexity 1 21 0 2158 117 40 0 chr1_random 5140626 5140926 -4015193 - AluSp SINE Alu -1 312 1 648 206 24 0 chr1_random 5140926 5141052 -4015067 - FLAM_A SINE Alu -4 129 1 1526 127 31 65 chr1_random 5141052 5141356 -4014763 - L1M3 LINE L1 -560 5620 5326 1492 160 0 0 chr1_random 5141356 5141569 -4014550 - AluSg/x SINE Alu -20 292 80 1526 127 31 65 chr1_random 5141569 5141586 -4014533 - L1M3 LINE L1 -854 5326 5310 719 144 0 0 chr1_random 5141586 5141704 -4014415 - AluSx SINE Alu -1 311 194 1190 78 0 0 chr1_random 5141705 5141846 -4014273 - AluSx SINE Alu -172 141 1 591 147 18 9 chr1_random 5141847 5141956 -4014163 - L1M3 LINE L1 -830 5316 5207 2197 134 7 0 chr1_random 5141957 5142264 -4013855 - AluSx SINE Alu -3 309 1 505 205 84 60 chr1_random 5142266 5142301 -4013818 - L1M3 LINE L1 -1373 4773 4740 1636 6 0 0 chr1_random 5142301 5142473 -4013646 - AluYa5 SINE Alu -11 300 129 505 205 84 60 chr1_random 5142473 5142603 -4013516 - L1M3 LINE L1 -1406 4740 4604 803 207 55 0 chr1_random 5142603 5142767 -4013352 - AluJo SINE Alu -13 299 127 1258 222 9 3 chr1_random 5142767 5143100 -4013019 - L1M3 LINE L1 -1538 4608 4274 367 156 55 83 chr1_random 5143123 5143185 -4012934 - L1M3 LINE L1 -1830 4316 4254 243 0 0 0 chr1_random 5143185 5143212 -4012907 + (TG)n Simple_repeat Simple_repeat 2 28 0 367 156 55 83 chr1_random 5143212 5143224 -4012895 - L1M3 LINE L1 -1892 4254 4243 2264 95 3 3 chr1_random 5143224 5143519 -4012600 - AluSc SINE Alu -14 295 1 367 156 55 83 chr1_random 5143519 5143552 -4012567 - L1M3 LINE L1 -1903 4243 4211 329 281 52 0 chr1_random 5143667 5143763 -4012356 + MIR SINE MIR 83 183 -79 2164 135 0 0 chr1_random 5143764 5144060 -4012059 + AluSx SINE Alu 1 296 -16 2898 87 10 0 chr1_random 5144060 5144462 -4011657 + MER41A LTR ERV1 105 510 -44 2316 93 7 0 chr1_random 5144484 5144810 -4011309 - AluSp SINE Alu 0 328 1 2104 97 26 71 chr1_random 5144810 5145162 -4010957 + HUERS-P1 LTR ERV1 1374 1740 -6076 2231 118 13 0 chr1_random 5145162 5145468 -4010651 + AluSx SINE Alu 3 312 0 2104 97 26 71 chr1_random 5145468 5145567 -4010552 + HUERS-P1 LTR ERV1 1740 3893 -3923 2374 102 0 16 chr1_random 5145569 5145882 -4010237 + AluSg SINE Alu 1 308 -2 266 79 0 0 chr1_random 5145896 5145934 -4010185 + HUERS-P1 LTR ERV1 3212 3249 -3014 * 11560 86 25 30 chr1_random 5145916 5146094 -4010025 + HUERS-P1 LTR ERV1 4168 4345 -1601 2126 128 10 0 chr1_random 5146094 5146391 -4009728 - AluSx SINE Alu -12 300 1 11560 86 25 30 chr1_random 5146391 5147827 -4008292 + HUERS-P1 LTR ERV1 4345 5774 -172 2098 112 20 10 chr1_random 5147827 5148123 -4007996 - AluSq SINE Alu -14 299 1 11560 86 25 30 chr1_random 5148123 5148294 -4007825 + HUERS-P1 LTR ERV1 5774 5944 -2 986 130 0 0 chr1_random 5148294 5148440 -4007679 + MER41A LTR ERV1 1 146 -408 2224 63 0 17 chr1_random 5148461 5148689 -4007430 + MER41A LTR ERV1 261 484 -70 2394 84 10 3 chr1_random 5148689 5148987 -4007132 - AluY SINE Alu -11 300 1 2224 63 0 17 chr1_random 5148987 5149057 -4007062 + MER41A LTR ERV1 484 554 0 621 323 43 15 chr1_random 5149057 5149388 -4006731 - LTR16A1 LTR ERVL -114 336 3 377 213 50 12 chr1_random 5149531 5149611 -4006508 + L2 LINE L2 3136 3218 -54 326 321 77 42 chr1_random 5149964 5150020 -4006099 + MIR SINE MIR 36 89 -173 2114 103 16 48 chr1_random 5150020 5150134 -4005985 + AluSx SINE Alu 1 117 -195 1982 74 23 8 chr1_random 5150134 5150390 -4005729 - AluSc SINE Alu -9 300 41 2114 103 16 48 chr1_random 5150390 5150586 -4005533 + AluSx SINE Alu 117 301 -11 326 321 77 42 chr1_random 5150586 5150697 -4005422 + MIR SINE MIR 89 209 -53 209 260 0 27 chr1_random 5151196 5151269 -4004850 + CT-rich Low_complexity Low_complexity 5 75 0 1830 67 74 7 chr1_random 5151306 5151591 -4004528 - MER41-int LTR ERV1 -578 5368 5065 262 362 6 17 chr1_random 5151599 5151776 -4004343 + CT-rich Low_complexity Low_complexity 4 178 0 2248 107 10 0 chr1_random 5152338 5152646 -4003473 - AluSq SINE Alu -2 311 1 257 264 148 52 chr1_random 5152650 5152805 -4003314 + MIR SINE MIR 83 252 -10 209 232 0 73 chr1_random 5155302 5155384 -4000735 + C-rich Low_complexity Low_complexity 3 78 0 22 109 0 0 chr1_random 5155410 5155502 -4000617 + GC_rich Low_complexity Low_complexity 1 92 0 23 0 0 0 chr1_random 5155512 5155535 -4000584 + GC_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr1_random 5155548 5155577 -4000542 + (CGAGG)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr1_random 5158621 5158642 -3997477 + GC_rich Low_complexity Low_complexity 1 21 0 210 229 21 0 chr1_random 5161031 5161079 -3995040 + C-rich Low_complexity Low_complexity 4 52 0 1700 147 0 80 chr1_random 5162103 5162416 -3993703 + AluJo SINE Alu 5 292 -20 1846 111 0 69 chr1_random 5162888 5163176 -3992943 + AluSq SINE Alu 13 280 -33 988 152 0 13 chr1_random 5163278 5163436 -3992683 + AluSc SINE Alu 145 300 -9 2044 108 45 3 chr1_random 5163553 5163840 -3992279 - AluSq SINE Alu -14 299 1 1953 161 3 0 chr1_random 5165315 5165606 -3990513 + AluJo SINE Alu 1 292 -20 2476 73 0 10 chr1_random 5165663 5165963 -3990156 + AluY SINE Alu 1 297 -14 877 67 37 8 chr1_random 5166254 5166388 -3989731 + MER30 DNA MER1_type 1 138 -92 2191 88 3 45 chr1_random 5166389 5166697 -3989422 - AluSg SINE Alu -15 295 1 2195 125 0 10 chr1_random 5166697 5167000 -3989119 - AluSx SINE Alu -12 300 1 25 0 0 0 chr1_random 5167008 5167033 -3989086 + AT_rich Low_complexity Low_complexity 1 25 0 437 134 268 0 chr1_random 5167055 5167137 -3988982 + MER30 DNA MER1_type 127 230 0 285 346 31 25 chr1_random 5167659 5167821 -3988298 - L2 LINE L2 0 3313 3151 2273 103 13 6 chr1_random 5168280 5168591 -3987528 + AluSq SINE Alu 1 313 0 401 67 50 0 chr1_random 5168643 5168703 -3987416 + U7 snRNA snRNA 1 63 0 235 242 66 94 chr1_random 5169144 5169276 -3986843 + MIR SINE MIR 35 166 -64 1992 150 20 0 chr1_random 5169800 5170100 -3986019 + AluJo SINE Alu 1 306 -6 1906 154 3 27 chr1_random 5171103 5171402 -3984717 + AluJb SINE Alu 1 292 -20 1845 104 8 0 chr1_random 5171466 5171707 -3984412 + AluSq SINE Alu 56 298 -15 779 233 40 22 chr1_random 5173543 5173766 -3982353 - L1MA9 LINE L1 -38 6274 6048 287 220 140 20 chr1_random 5175479 5175579 -3980540 + L2 LINE L2 3155 3266 -6 243 0 0 0 chr1_random 5176773 5176800 -3979319 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2140 69 28 58 chr1_random 5176802 5177093 -3979026 - AluSx SINE Alu -30 282 1 894 240 115 113 chr1_random 5177101 5177562 -3978557 - L2 LINE L2 -296 3017 2554 2449 67 14 3 chr1_random 5177562 5177859 -3978260 + AluSp SINE Alu 1 300 -13 894 240 115 113 chr1_random 5177859 5178184 -3977935 - L2 LINE L2 -759 2554 2231 2309 117 10 3 chr1_random 5179967 5180275 -3975844 - AluSg SINE Alu 0 310 1 218 95 24 0 chr1_random 5181001 5181043 -3975076 + (TA)n Simple_repeat Simple_repeat 2 44 0 883 106 0 63 chr1_random 5181857 5181999 -3974120 + FLAM_C SINE Alu 1 133 0 589 304 151 54 chr1_random 5183122 5184147 -3971972 + L2 LINE L2 1326 2450 -864 2139 117 0 3 chr1_random 5184828 5185118 -3971001 + AluSq SINE Alu 1 289 -24 333 0 0 0 chr1_random 5185123 5185160 -3970959 + (CA)n Simple_repeat Simple_repeat 2 38 0 2265 118 0 0 chr1_random 5185162 5185468 -3970651 + AluSx SINE Alu 1 306 -6 582 265 108 27 chr1_random 5186451 5186894 -3969225 - MER115 DNA AcHobo 0 693 183 2156 131 13 0 chr1_random 5186947 5187245 -3968874 - AluSx SINE Alu -10 302 1 319 164 0 55 chr1_random 5187281 5187354 -3968765 - MER5C DNA MER1_type -50 274 206 183 182 0 23 chr1_random 5187383 5187427 -3968692 - MER5C DNA MER1_type -201 123 81 2471 90 0 0 chr1_random 5187438 5187749 -3968370 - AluY SINE Alu 0 311 1 1092 96 0 0 chr1_random 5187749 5187885 -3968234 - AluSq/x SINE Alu -177 136 1 2292 111 0 7 chr1_random 5187887 5188193 -3967926 - AluSp SINE Alu -7 306 3 2289 99 16 0 chr1_random 5188210 5188514 -3967605 - AluSp SINE Alu -4 309 1 318 326 0 0 chr1_random 5188519 5188605 -3967514 - MER5C DNA MER1_type -231 93 8 291 282 40 86 chr1_random 5188609 5188783 -3967336 - MER115 DNA AcHobo -527 166 1 * 3868 125 16 32 chr1_random 5188781 5189253 -3966866 + MER41B LTR ERV1 1 480 -155 2556 93 33 16 chr1_random 5189253 5189619 -3966500 - THE1C LTR MaLR -3 372 1 3868 125 16 32 chr1_random 5189619 5189667 -3966452 + MER41B LTR ERV1 480 527 -108 1812 169 16 19 chr1_random 5189667 5189980 -3966139 - AluSx SINE Alu 0 312 1 3868 125 16 32 chr1_random 5189980 5190104 -3966015 + MER41B LTR ERV1 527 635 0 675 178 8 0 chr1_random 5190327 5190445 -3965674 - FLAM_A SINE Alu -13 129 11 324 145 174 0 chr1_random 5190585 5190654 -3965465 + MLT1B LTR MaLR 1 81 -309 1665 200 37 0 chr1_random 5190654 5190954 -3965165 - AluSx SINE Alu -1 311 1 1228 123 0 22 chr1_random 5191033 5191212 -3964907 + AluSg/x SINE Alu 136 310 -2 1613 123 92 65 chr1_random 5191486 5191779 -3964340 + AluJb SINE Alu 1 301 -11 4861 84 4 29 chr1_random 5191817 5192441 -3963678 + MER4A LTR ERV1 1 608 -56 2584 69 0 0 chr1_random 5192441 5192745 -3963374 - AluY SINE Alu -7 304 1 4861 84 4 29 chr1_random 5192745 5192801 -3963318 + MER4A LTR ERV1 608 664 0 2082 156 68 100 chr1_random 5193096 5193340 -3962779 + Charlie1 DNA MER1_type 1967 2217 -544 2330 92 10 10 chr1_random 5193340 5193644 -3962475 + AluSg SINE Alu 1 304 -6 2082 156 68 100 chr1_random 5193644 5193712 -3962407 + Charlie1 DNA MER1_type 2217 2286 -475 1430 214 7 16 chr1_random 5193712 5193849 -3962270 + AluJo SINE Alu 1 138 -174 1532 172 45 28 chr1_random 5193849 5194139 -3961980 + AluJb SINE Alu 1 295 -17 1430 214 7 16 chr1_random 5194139 5194309 -3961810 + AluJo SINE Alu 138 305 -7 2082 156 68 100 chr1_random 5194309 5194567 -3961552 + Charlie1 DNA MER1_type 2286 2551 -210 2028 130 23 29 chr1_random 5194567 5194875 -3961244 + AluSx SINE Alu 1 306 -6 2082 156 68 100 chr1_random 5194875 5194979 -3961140 + Charlie1 DNA MER1_type 2551 2657 -104 2036 163 0 0 chr1_random 5194979 5195279 -3960840 - AluSx SINE Alu -8 304 5 1889 139 61 0 chr1_random 5195285 5195565 -3960554 - AluSg SINE Alu -13 297 1 2082 156 68 100 chr1_random 5195565 5195663 -3960456 + Charlie1 DNA MER1_type 2662 2724 -37 1657 172 63 40 chr1_random 5195663 5195741 -3960378 - L1MB5 LINE L1 -13 6161 6086 2300 120 0 0 chr1_random 5195741 5196049 -3960070 - AluSg SINE Alu -2 308 1 1657 172 63 40 chr1_random 5196049 5196395 -3959724 - L1MB5 LINE L1 -88 6086 5727 607 246 8 0 chr1_random 5196413 5196535 -3959584 + AluJb SINE Alu 2 124 -188 1466 86 32 0 chr1_random 5196548 5196734 -3959385 + AluSq SINE Alu 5 196 -117 730 215 6 23 chr1_random 5196734 5196911 -3959208 + L1MB5 LINE L1 5910 6083 -91 1048 60 0 45 chr1_random 5196912 5197046 -3959073 + AluSg SINE Alu 1 128 -182 280 73 24 0 chr1_random 5197074 5197115 -3959004 + AluSp/q SINE Alu 209 250 -53 900 159 37 79 chr1_random 5197115 5197329 -3958790 + AluJo SINE Alu 85 289 -23 2286 115 0 13 chr1_random 5197337 5197651 -3958468 - AluSg SINE Alu 0 310 1 979 146 18 18 chr1_random 5197660 5197825 -3958294 - FAM SINE Alu -9 166 2 1020 130 14 72 chr1_random 5197827 5197879 -3958240 - L1MB5 LINE L1 -435 5739 5686 2381 96 0 0 chr1_random 5197879 5198172 -3957947 + AluSq SINE Alu 1 293 -20 1020 130 14 72 chr1_random 5198172 5198326 -3957793 - L1MB5 LINE L1 -488 5686 5545 2073 136 0 13 chr1_random 5198369 5198504 -3957615 + AluSx SINE Alu 2 137 -175 2224 108 3 10 chr1_random 5198504 5198811 -3957308 + AluSp SINE Alu 1 305 -8 2073 136 0 13 chr1_random 5198811 5198976 -3957143 + AluSx SINE Alu 137 298 -14 1750 141 80 0 chr1_random 5198989 5199278 -3956841 + AluSq SINE Alu 1 310 0 870 216 13 0 chr1_random 5199278 5199431 -3956688 + AluJb SINE Alu 134 288 -24 23 0 0 0 chr1_random 5199431 5199454 -3956665 + AT_rich Low_complexity Low_complexity 1 23 0 1454 162 4 17 chr1_random 5199454 5199689 -3956430 - AluJo SINE Alu -80 232 1 2543 78 0 0 chr1_random 5199759 5200067 -3956052 - AluY SINE Alu -3 308 1 236 87 0 0 chr1_random 5200098 5200144 -3955975 + L1MA8 LINE L1 6246 6291 0 2272 115 0 0 chr1_random 5200154 5200458 -3955661 + AluSp SINE Alu 5 308 -5 1788 171 4 4 chr1_random 5200470 5200774 -3955345 + AluJb SINE Alu 6 309 0 2070 94 9 78 chr1_random 5200824 5201144 -3954975 + AluSg SINE Alu 1 298 -12 1974 207 9 39 chr1_random 5201372 5201835 -3954284 + LTR2 LTR ERV1 1 449 0 1850 110 4 19 chr1_random 5201980 5202243 -3953876 + AluSg SINE Alu 52 310 0 295 136 20 140 chr1_random 5202265 5202374 -3953745 - AluS SINE Alu -238 65 1 2023 130 0 17 chr1_random 5202374 5202675 -3953444 + AluSx SINE Alu 17 312 0 1773 98 42 119 chr1_random 5202687 5203022 -3953097 + AluSx SINE Alu 3 311 -1 357 301 19 0 chr1_random 5203022 5203125 -3952994 + L1 LINE L1 3131 3235 -2911 2543 61 0 0 chr1_random 5203125 5203419 -3952700 - AluY SINE Alu -17 294 1 283 103 0 0 chr1_random 5203434 5203473 -3952646 - Alu SINE Alu -14 287 249 274 225 62 0 chr1_random 5203573 5203653 -3952466 + AluYb8 SINE Alu 108 192 -116 623 110 0 11 chr1_random 5203653 5203744 -3952375 - AluS SINE Alu -221 91 2 1284 100 11 17 chr1_random 5203765 5203945 -3952174 - AluSx SINE Alu 0 312 134 2658 141 39 82 chr1_random 5203945 5204137 -3951982 + MER6A DNA MER2_type 43 242 -623 252 0 0 0 chr1_random 5204137 5204165 -3951954 + (TG)n Simple_repeat Simple_repeat 2 29 0 2658 141 39 82 chr1_random 5204165 5204560 -3951559 + MER6A DNA MER2_type 242 605 0 841 239 53 14 chr1_random 5204892 5205101 -3951018 + MIR SINE MIR 27 243 -19 2024 135 0 14 chr1_random 5205399 5205535 -3950584 + AluSx SINE Alu 1 137 -175 1978 133 40 17 chr1_random 5205535 5205836 -3950283 + AluSx SINE Alu 1 308 -4 2024 135 0 14 chr1_random 5205836 5205996 -3950123 + AluSx SINE Alu 137 293 -19 1076 103 0 0 chr1_random 5206058 5206194 -3949925 - AluSx SINE Alu -176 136 1 347 279 111 6 chr1_random 5206292 5206464 -3949655 + L2 LINE L2 1528 1717 -1597 1069 281 72 11 chr1_random 5206472 5206914 -3949205 + L2 LINE L2 2290 2758 -556 443 240 10 0 chr1_random 5206915 5207011 -3949108 + L2 LINE L2 3216 3312 -1 977 169 15 10 chr1_random 5207064 5207265 -3948854 + L1 LINE L1 3996 4197 -1949 2369 65 21 3 chr1_random 5207273 5207563 -3948556 - AluY SINE Alu -16 295 1 1328 183 113 12 chr1_random 5207613 5207870 -3948249 + AluJo SINE Alu 1 283 -29 216 0 0 0 chr1_random 5207870 5207894 -3948225 + (CCA)n Simple_repeat Simple_repeat 2 25 0 2095 106 3 7 chr1_random 5207917 5208199 -3947920 + AluSq SINE Alu 1 281 -32 431 216 94 184 chr1_random 5208211 5208644 -3947475 + L1 LINE L1 3437 3813 -2333 2302 96 0 17 chr1_random 5208644 5208945 -3947174 + AluSg SINE Alu 1 296 -14 431 216 94 184 chr1_random 5208945 5209056 -3947063 + L1 LINE L1 3813 3932 -2214 1902 122 4 4 chr1_random 5209093 5209363 -3946756 + AluSq SINE Alu 3 272 -41 2283 63 10 13 chr1_random 5209478 5209779 -3946340 + AluY SINE Alu 1 300 -11 2357 90 0 3 chr1_random 5209890 5210244 -3945875 - AluSx SINE Alu 0 312 1 2692 122 14 75 chr1_random 5210247 5210556 -3945563 - L1MA8 LINE L1 -187 6104 5838 773 183 0 0 chr1_random 5210556 5210682 -3945437 - FLAM_A SINE Alu -7 126 1 2692 122 14 75 chr1_random 5210682 5210889 -3945230 - L1MA8 LINE L1 -453 5838 5620 309 27 0 0 chr1_random 5210970 5211007 -3945112 - MER4E LTR ERV1 -77 689 653 447 238 53 88 chr1_random 5211019 5211159 -3944960 - HAL1 LINE L1 -1046 1461 1330 1886 129 47 4 chr1_random 5211159 5211281 -3944838 + AluJo SINE Alu 1 116 -196 281 47 23 0 chr1_random 5211281 5211324 -3944795 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1886 129 47 4 chr1_random 5211324 5211479 -3944640 + AluJo SINE Alu 116 290 -22 447 238 53 88 chr1_random 5211479 5211565 -3944554 - HAL1 LINE L1 -1177 1330 1243 2425 100 0 0 chr1_random 5211566 5211877 -3944242 - AluY SINE Alu 0 311 1 801 128 0 0 chr1_random 5211963 5212072 -3944047 - FRAM SINE Alu -13 163 55 1676 152 0 32 chr1_random 5212184 5212298 -3943821 + AluSx SINE Alu 24 140 -172 2165 110 34 0 chr1_random 5212298 5212589 -3943530 + AluSx SINE Alu 1 301 -11 1676 152 0 32 chr1_random 5212589 5212751 -3943368 + AluSx SINE Alu 140 291 -21 440 188 148 20 chr1_random 5212760 5212909 -3943210 - HAL1 LINE L1 -1544 963 796 311 247 27 27 chr1_random 5212974 5213047 -3943072 + L1 LINE L1 4741 4813 -1333 1318 111 6 0 chr1_random 5213130 5213301 -3942818 - AluSq SINE Alu -141 172 1 2241 92 4 0 chr1_random 5213301 5213619 -3942500 - AluSg SINE Alu 0 319 1 1742 151 13 34 chr1_random 5213621 5213919 -3942200 - AluJo SINE Alu -20 292 1 21 36 0 0 chr1_random 5213922 5213950 -3942169 + AT_rich Low_complexity Low_complexity 1 28 0 344 331 87 0 chr1_random 5214111 5214238 -3941881 - HAL1 LINE L1 -2353 154 17 2274 104 0 3 chr1_random 5214243 5214540 -3941579 - AluSq SINE Alu -17 296 1 1644 108 148 32 chr1_random 5214547 5214824 -3941295 - AluSg1 SINE Alu 0 309 1 1628 157 66 4 chr1_random 5214824 5215098 -3941021 - AluJb SINE Alu -21 291 1 1229 176 197 0 chr1_random 5215133 5215291 -3940828 - AluJo SINE Alu -20 292 166 2172 146 0 0 chr1_random 5215291 5215593 -3940526 - AluSx SINE Alu -10 302 1 1229 176 197 0 chr1_random 5215593 5215678 -3940441 - AluJo SINE Alu -146 166 1 310 129 14 0 chr1_random 5215695 5215758 -3940361 + Alu SINE Alu 2 53 -249 360 273 0 30 chr1_random 5215860 5215959 -3940160 - L1M4 LINE L1 -2669 3975 3880 186 43 0 0 chr1_random 5215967 5215990 -3940129 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2149 133 7 7 chr1_random 5215990 5216299 -3939820 - AluSx SINE Alu -1 311 3 335 278 0 0 chr1_random 5216304 5216412 -3939707 - L1M4 LINE L1 -2838 3806 3699 506 187 0 0 chr1_random 5216469 5216560 -3939559 - U6 snRNA snRNA 0 107 17 288 194 75 0 chr1_random 5216603 5216670 -3939449 - L1M4 LINE L1 -4886 1656 1585 843 125 0 0 chr1_random 5216670 5216790 -3939329 - AluSc SINE Alu -8 301 182 602 227 5 59 chr1_random 5216795 5216917 -3939202 - L1M4 LINE L1 -2976 3981 3875 2196 126 3 22 chr1_random 5216917 5217234 -3938885 - AluSx SINE Alu -1 311 1 602 227 5 59 chr1_random 5217234 5217331 -3938788 - L1M4 LINE L1 -3082 3875 3774 1471 120 0 62 chr1_random 5217333 5217517 -3938602 - AluSg/x SINE Alu -2 310 116 2400 81 0 7 chr1_random 5217517 5217835 -3938284 - AluY SINE Alu 0 311 1 2216 107 0 7 chr1_random 5217835 5218133 -3937986 - AluSx SINE Alu -16 296 1 1471 120 0 62 chr1_random 5218133 5218188 -3937931 - AluSg/x SINE Alu -194 118 85 778 210 0 21 chr1_random 5218190 5218333 -3937786 - AluJo SINE Alu -171 141 2 396 206 62 41 chr1_random 5218338 5218484 -3937635 - L1M4 LINE L1 -4785 2174 2026 514 176 0 0 chr1_random 5218616 5218707 -3937412 - U6 snRNA snRNA 0 107 17 1358 239 59 76 chr1_random 5218750 5218817 -3937302 - L1M4 LINE L1 -4886 1969 1902 2263 117 3 0 chr1_random 5218817 5219117 -3937002 - AluSc SINE Alu -8 301 1 1358 239 59 76 chr1_random 5219117 5219247 -3936872 - L1M4 LINE L1 -4953 1902 1771 2046 151 10 6 chr1_random 5219247 5219558 -3936561 - AluJb SINE Alu 0 312 1 1358 239 59 76 chr1_random 5219558 5219882 -3936237 - L1M4 LINE L1 -5084 1771 1443 2069 89 104 0 chr1_random 5219882 5220162 -3935957 - AluY SINE Alu 0 311 3 2424 103 0 0 chr1_random 5220171 5220483 -3935636 - AluSx SINE Alu 0 312 1 1358 239 59 76 chr1_random 5220483 5220578 -3935541 - L1M4 LINE L1 -5420 1435 1352 265 152 0 0 chr1_random 5220595 5220641 -3935478 - L1M4 LINE L1 -5487 1372 1327 288 0 0 0 chr1_random 5220684 5220716 -3935403 + (TG)n Simple_repeat Simple_repeat 2 33 0 2104 120 3 23 chr1_random 5220871 5221231 -3934888 - AluSp SINE Alu 0 313 1 1572 178 38 10 chr1_random 5221263 5221556 -3934563 + AluJb SINE Alu 1 301 -11 2156 132 0 0 chr1_random 5221563 5221858 -3934261 + AluSx SINE Alu 1 295 -17 3152 102 8 30 chr1_random 5221873 5221906 -3934213 + LTR15 LTR ERV1 1 33 -460 2396 87 0 3 chr1_random 5221906 5222204 -3933915 + AluY SINE Alu 1 297 -14 3152 102 8 30 chr1_random 5222204 5222668 -3933451 + LTR15 LTR ERV1 33 487 -6 339 335 57 24 chr1_random 5223201 5223413 -3932706 - L1M4 LINE L1 -6630 229 11 371 312 90 72 chr1_random 5223416 5223455 -3932664 - L1ME4a LINE L1 -129 5992 5955 2149 108 17 0 chr1_random 5223455 5223752 -3932367 - AluSx SINE Alu -7 305 4 371 312 90 72 chr1_random 5223752 5223914 -3932205 - L1ME4a LINE L1 -166 5955 5797 2399 109 0 0 chr1_random 5223914 5224226 -3931893 - AluSx SINE Alu 0 312 1 371 312 90 72 chr1_random 5224226 5224375 -3931744 - L1ME4a LINE L1 -324 5797 5634 2044 84 14 0 chr1_random 5224375 5224661 -3931458 + MER4E LTR ERV1 1 290 -489 1007 167 0 0 chr1_random 5224662 5224818 -3931301 + AluSg/x SINE Alu 135 290 -20 313 296 49 0 chr1_random 5224818 5224899 -3931220 - L1MC4 LINE L1 -1344 6698 6614 * 341 303 0 0 chr1_random 5224829 5224905 -3931214 + L1MC4 LINE L1 6614 6689 -1353 2451 170 64 4 chr1_random 5224905 5225376 -3930743 + MER4E LTR ERV1 281 779 0 601 269 42 64 chr1_random 5225376 5225637 -3930482 - L1ME4a LINE L1 -527 5637 5382 304 294 107 117 chr1_random 5225755 5225789 -3930330 - L1ME4a LINE L1 -799 5347 5314 11159 32 4 103 chr1_random 5225789 5227318 -3928801 - SVA Other Other 0 1386 9 304 294 107 117 chr1_random 5227318 5227494 -3928625 - L1ME4a LINE L1 -832 5314 5138 1854 146 18 4 chr1_random 5227494 5227769 -3928350 - AluJb SINE Alu -33 279 1 2401 99 0 0 chr1_random 5227774 5228076 -3928043 - AluSp SINE Alu -11 302 1 304 294 107 117 chr1_random 5228076 5228205 -3927914 - L1ME4a LINE L1 -1012 5134 5005 2704 78 50 3 chr1_random 5228205 5228565 -3927554 + MER51B LTR ERV1 1 377 0 304 294 107 117 chr1_random 5228565 5228669 -3927450 - L1ME4a LINE L1 -1141 5005 4901 2134 119 0 48 chr1_random 5228669 5228981 -3927138 + AluSg SINE Alu 1 297 -13 304 294 107 117 chr1_random 5228981 5229100 -3927019 - L1ME4a LINE L1 -1245 4901 4782 2202 112 3 3 chr1_random 5229120 5229415 -3926704 - AluSx SINE Alu -17 295 1 1115 170 29 34 chr1_random 5229464 5229670 -3926449 - AluJo SINE Alu 0 312 108 439 267 46 92 chr1_random 5229715 5229816 -3926303 - HAL1 LINE L1 -38 2469 2382 2151 137 0 0 chr1_random 5229816 5230115 -3926004 - AluSx SINE Alu -13 299 1 439 267 46 92 chr1_random 5230115 5230230 -3925889 - HAL1 LINE L1 -125 2382 2263 446 313 0 0 chr1_random 5230270 5230414 -3925705 + AluSq/x SINE Alu 2 145 -167 360 232 30 20 chr1_random 5230434 5230533 -3925586 - AluJo SINE Alu -179 123 24 830 134 45 0 chr1_random 5430540 5430674 -3725445 - LTR39 LTR ERV1 -643 140 1 26 0 0 0 chr1_random 5430986 5431012 -3725107 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr1_random 5431521 5431542 -3724577 + AT_rich Low_complexity Low_complexity 1 21 0 46 74 0 0 chr1_random 5431655 5431750 -3724369 + AT_rich Low_complexity Low_complexity 1 95 0 265 257 0 14 chr1_random 5431942 5432012 -3724107 + CT-rich Low_complexity Low_complexity 2 70 0 1264 184 69 23 chr1_random 5432332 5432593 -3723526 + LTR39 LTR ERV1 511 783 0 567 303 13 30 chr1_random 5433404 5433635 -3722484 + MIR SINE MIR 36 262 0 1062 130 0 3 chr1_random 5433747 5434107 -3722012 + (GGGAGA)n Simple_repeat Simple_repeat 1 360 0 694 133 17 22 chr1_random 5434113 5434293 -3721826 + GA-rich Low_complexity Low_complexity 2 180 0 224 200 10 0 chr1_random 5434430 5434530 -3721589 + (TA)n Simple_repeat Simple_repeat 2 102 0 2221 123 64 31 chr1_random 5434530 5434549 -3721570 + MER31A LTR ERV1 82 99 -386 468 51 0 0 chr1_random 5434549 5434608 -3721511 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2221 123 64 31 chr1_random 5434608 5434979 -3721140 + MER31A LTR ERV1 99 485 0 232 287 35 70 chr1_random 5435475 5435590 -3720529 - MIR SINE MIR -94 114 4 1264 188 144 82 chr1_random 5436405 5436842 -3719277 + MLT1C LTR MaLR 1 464 -3 1059 120 24 58 chr1_random 5438114 5438322 -3717797 + THE1C LTR MaLR 175 375 0 1757 204 34 22 chr1_random 5438433 5438790 -3717329 - MLT1A1 LTR MaLR -4 361 1 25 0 0 0 chr1_random 5440577 5440602 -3715517 + AT_rich Low_complexity Low_complexity 1 25 0 2172 147 0 0 chr1_random 5440661 5440973 -3715146 - AluSx SINE Alu 0 312 1 3074 94 37 7 chr1_random 5441084 5441519 -3714600 - MER83 LTR ERV1 0 448 1 333 0 0 0 chr1_random 5441547 5441584 -3714535 + (CA)n Simple_repeat Simple_repeat 2 38 0 449 265 133 14 chr1_random 5441589 5441800 -3714319 - MIR SINE MIR -4 258 23 647 130 0 0 chr1_random 5442344 5442444 -3713675 + AluSg/x SINE Alu 210 309 -1 237 271 71 0 chr1_random 5442454 5442524 -3713595 - MER91A DNA MER1_type -2 194 120 752 148 9 0 chr1_random 5442752 5442867 -3713252 + AluJb SINE Alu 2 117 -195 817 159 117 14 chr1_random 5442973 5443118 -3713001 - AluSx SINE Alu -152 160 1 743 246 121 25 chr1_random 5443376 5443656 -3712463 - MLT1I LTR MaLR -33 376 70 2194 140 0 0 chr1_random 5443902 5444209 -3711910 + AluSx SINE Alu 3 309 -3 220 300 0 0 chr1_random 5445066 5445136 -3710983 - MIR SINE MIR -83 179 110 1528 129 4 52 chr1_random 5445185 5445433 -3710686 - LTR8 LTR ERV1 0 691 456 * 3628 86 20 25 chr1_random 5445432 5445942 -3710177 - LTR8 LTR ERV1 -184 507 1 1783 255 77 40 chr1_random 5445989 5446585 -3709534 + MLT1E2 LTR MaLR 1 618 -8 949 175 90 0 chr1_random 5447021 5447232 -3708887 - Charlie5 DNA MER1_type 0 2623 2394 659 123 0 9 chr1_random 5447526 5447640 -3708479 + (TCCCC)n Simple_repeat Simple_repeat 1 113 0 219 114 0 0 chr1_random 5447846 5447881 -3708238 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 425 206 72 0 chr1_random 5447898 5447995 -3708124 - MLT2D LTR ERVL 0 515 412 3119 133 109 56 chr1_random 5447995 5448149 -3707970 + MER4A LTR ERV1 1 145 -519 2281 129 43 3 chr1_random 5448149 5448499 -3707620 - THE1B LTR MaLR 0 364 1 3119 133 109 56 chr1_random 5448499 5448974 -3707145 + MER4A LTR ERV1 145 664 0 1131 259 29 3 chr1_random 5448974 5449287 -3706832 - MLT2D LTR ERVL -93 321 1 343 335 19 19 chr1_random 5449763 5449924 -3706195 + MIR SINE MIR 23 183 -79 467 101 13 0 chr1_random 5452386 5452465 -3703654 + (GA)n Simple_repeat Simple_repeat 1 80 0 221 116 0 23 chr1_random 5454555 5454598 -3701521 + (GGGAGA)n Simple_repeat Simple_repeat 4 45 0 3118 146 46 21 chr1_random 5454682 5455242 -3700877 - MER4B LTR ERV1 -36 574 1 287 240 62 62 chr1_random 5455976 5456035 -3700084 + L2 LINE L2 3170 3231 -41 1622 175 82 20 chr1_random 5456035 5456378 -3699741 - THE1B LTR MaLR 0 364 1 287 240 62 62 chr1_random 5456378 5456414 -3699705 + L2 LINE L2 3230 3265 -7 422 214 21 29 chr1_random 5456414 5456554 -3699565 - LTR37A LTR ERV1 0 426 288 14080 94 8 15 chr1_random 5456554 5458594 -3697525 + HERVH LTR ERV1 962 2987 -4726 823 160 20 13 chr1_random 5458588 5458738 -3697381 + HERVH LTR ERV1 3140 3290 -4423 * 3460 111 0 4 chr1_random 5458737 5459233 -3696886 + HERVH LTR ERV1 3500 3993 -3720 4304 151 1 1 chr1_random 5459235 5459897 -3696222 + HERVH LTR ERV1 4488 5149 -2564 1377 119 20 0 chr1_random 5459928 5460130 -3695989 + HERVH LTR ERV1 5614 5819 -1894 * 2509 84 48 13 chr1_random 5460128 5460507 -3695612 + HERVH LTR ERV1 7322 7713 0 3414 60 5 7 chr1_random 5460507 5460956 -3695163 + LTR7 LTR ERV1 1 448 -2 1028 136 68 0 chr1_random 5460965 5461127 -3694992 - THE1C LTR MaLR -202 173 1 962 216 117 44 chr1_random 5461164 5461549 -3694570 - LTR37A LTR ERV1 -1 425 13 1903 121 79 0 chr1_random 5462287 5462567 -3693552 + AluSg SINE Alu 1 302 -8 662 223 7 13 chr1_random 5462676 5463144 -3692975 + (TCCA)n Simple_repeat Simple_repeat 1 464 0 252 264 77 55 chr1_random 5463171 5463262 -3692857 - L2 LINE L2 -20 3252 3160 491 163 11 0 chr1_random 5463268 5463360 -3692759 + L2 LINE L2 2490 2582 -732 569 334 83 31 chr1_random 5463422 5463901 -3692218 + L2 LINE L2 2809 3312 -1 380 263 11 0 chr1_random 5463984 5464079 -3692040 + MER34 LTR ERV1 1 96 -446 318 212 107 93 chr1_random 5464266 5464558 -3691561 + LTR49 LTR ERV1 389 594 -1 * 634 171 47 118 chr1_random 5464558 5464755 -3691364 + MER20 DNA MER1_type 38 219 0 2326 220 86 31 chr1_random 5464792 5465388 -3690731 - L1ME2 LINE L1 -9 6155 5516 434 167 21 10 chr1_random 5465388 5465484 -3690635 - L1PA14 LINE L1 0 6161 6065 2326 220 86 31 chr1_random 5465484 5465564 -3690555 - L1ME2 LINE L1 -648 5516 5442 1782 136 4 8 chr1_random 5466199 5466457 -3689662 + AluSx SINE Alu 1 257 -55 549 224 28 7 chr1_random 5466783 5466926 -3689193 - MIR SINE MIR -22 240 95 237 313 86 17 chr1_random 5467253 5467544 -3688575 - L1MC/D LINE L1 -756 5603 5293 417 301 65 42 chr1_random 5468137 5468688 -3687431 - L1MC/D LINE L1 -1786 4360 3797 21 71 0 0 chr1_random 5468693 5468735 -3687384 + AT_rich Low_complexity Low_complexity 1 42 0 214 140 0 40 chr1_random 5468751 5468801 -3687318 + (TTTTTA)n Simple_repeat Simple_repeat 6 53 0 405 293 93 46 chr1_random 5469537 5469796 -3686323 + MLT1H LTR MaLR 79 349 -200 337 213 38 0 chr1_random 5470253 5470333 -3685786 + MLT1H LTR MaLR 104 186 -363 1112 200 87 8 chr1_random 5472136 5472401 -3683718 + L1MB3 LINE L1 5621 5906 -277 544 151 8 17 chr1_random 5472435 5472554 -3683565 + (TGGA)n Simple_repeat Simple_repeat 4 121 0 822 291 72 56 chr1_random 5472557 5473056 -3683063 - LTR33 LTR ERVL -14 507 1 281 330 90 0 chr1_random 5473056 5473156 -3682963 - L2 LINE L2 -13 3300 3192 23 33 0 0 chr1_random 5473167 5473197 -3682922 + AT_rich Low_complexity Low_complexity 1 30 0 1159 222 14 0 chr1_random 5473338 5473554 -3682565 - MER58A DNA MER1_type -5 219 1 1668 161 164 24 chr1_random 5475587 5475916 -3680203 - THE1C LTR MaLR 0 375 1 767 255 122 42 chr1_random 5476302 5476655 -3679464 - MER21B LTR ERV1 -124 739 359 1213 246 53 31 chr1_random 5476661 5476982 -3679137 - MER21B LTR ERV1 -436 427 100 349 287 40 0 chr1_random 5477015 5477116 -3679003 - MER21B LTR ERV1 -757 106 2 1525 208 90 25 chr1_random 5479303 5479465 -3676654 + MLT1B LTR MaLR 1 151 -239 291 28 0 0 chr1_random 5479465 5479501 -3676618 + (TC)n Simple_repeat Simple_repeat 1 36 0 1525 208 90 25 chr1_random 5479501 5479704 -3676415 + MLT1B LTR MaLR 151 390 0 2066 119 54 40 chr1_random 5479912 5480282 -3675837 - THE1C LTR MaLR 0 375 1 907 290 35 14 chr1_random 5480381 5480743 -3675376 - L1MC4 LINE L1 -897 6996 6541 457 332 152 27 chr1_random 5480752 5481409 -3674710 + L2 LINE L2 1707 2445 -869 389 286 14 29 chr1_random 5481478 5481618 -3674501 + MIR SINE MIR 107 244 -18 334 245 47 28 chr1_random 5481938 5481977 -3674142 + MLT1K LTR MaLR 321 358 -230 2606 105 11 30 chr1_random 5481977 5482347 -3673772 + THE1B LTR MaLR 1 363 -1 334 245 47 28 chr1_random 5482347 5482413 -3673706 + MLT1K LTR MaLR 358 428 -160 422 273 45 66 chr1_random 5482442 5482640 -3673479 + MLT1K LTR MaLR 395 588 0 717 272 95 69 chr1_random 5483154 5483544 -3672575 + LTR16C LTR ERVL 89 488 -3 1803 238 70 23 chr1_random 5483761 5484005 -3672114 + MER74B LTR ERVL 58 289 -333 2443 127 8 27 chr1_random 5484005 5484375 -3671744 - THE1B LTR MaLR 0 364 2 1803 238 70 23 chr1_random 5484375 5484659 -3671460 + MER74B LTR ERVL 289 611 -11 1166 278 101 12 chr1_random 5486049 5486613 -3669506 - L1MEc LINE L1 -3201 3014 2401 3528 59 20 2 chr1_random 5486613 5487053 -3669066 + LTR7 LTR ERV1 1 448 -2 20492 91 11 23 chr1_random 5487055 5490086 -3666033 + HERVH LTR ERV1 1 2995 -4718 893 136 27 0 chr1_random 5490065 5490212 -3665907 + HERVH LTR ERV1 3140 3290 -4423 * 29224 68 9 4 chr1_random 5490201 5494467 -3661652 + HERVH LTR ERV1 3491 7713 0 3780 58 0 2 chr1_random 5494467 5494916 -3661203 + LTR7 LTR ERV1 1 448 -2 281 267 81 32 chr1_random 5494966 5495195 -3660924 - L1MEc LINE L1 -3907 2308 2115 562 272 59 12 chr1_random 5495215 5495469 -3660650 + L1M4 LINE L1 2941 3206 -2940 3689 255 62 34 chr1_random 5495474 5496679 -3659440 + L1MB8 LINE L1 5 1243 -5299 * 5990 164 27 10 chr1_random 5496674 5498663 -3657456 + L1PB3 LINE L1 4126 6154 0 2279 229 38 38 chr1_random 5498670 5499472 -3656647 + L1MB8 LINE L1 1227 2040 -4606 451 265 74 56 chr1_random 5499683 5500317 -3655802 + L1MB8 LINE L1 2160 2762 -3882 1859 211 28 60 chr1_random 5500420 5500616 -3655503 + L1MB8 LINE L1 2815 3016 -3628 895 174 0 0 chr1_random 5500616 5500748 -3655371 + FLAM_C SINE Alu 2 133 0 1859 211 28 60 chr1_random 5500748 5501119 -3655000 + L1MB8 LINE L1 3016 3364 -3280 4733 221 51 29 chr1_random 5501130 5501574 -3654545 + L1MB8 LINE L1 4319 4751 -1893 2978 89 3 0 chr1_random 5501574 5501935 -3654184 - THE1B LTR MaLR -2 362 1 4733 221 51 29 chr1_random 5501935 5502891 -3653228 + L1MB8 LINE L1 4751 5751 -893 1782 239 16 3 chr1_random 5502891 5503268 -3652851 + MER92B LTR ERV1 1 382 -254 3904 203 32 31 chr1_random 5503286 5504233 -3651886 + L1MB8 LINE L1 5726 6674 -2 1054 238 4 4 chr1_random 5504246 5504527 -3651592 + L1ME3A LINE L1 2272 2552 -3594 1349 272 97 12 chr1_random 5504560 5505130 -3650989 - L1M4 LINE L1 -2060 4086 3469 1947 96 15 99 chr1_random 5505161 5505495 -3650624 - AluSx SINE Alu -6 306 1 300 271 21 0 chr1_random 5505550 5505646 -3650473 + L1ME3A LINE L1 4945 5042 -1104 2438 111 34 12 chr1_random 5505649 5506070 -3650049 - LTR23 LTR ERV1 -5 462 1 772 253 11 22 chr1_random 5506071 5506431 -3649688 - LTR23-int LTR ERV1 0 5123 4701 25 0 0 0 chr1_random 5506542 5506567 -3649552 + AT_rich Low_complexity Low_complexity 1 25 0 3095 224 24 5 chr1_random 5506649 5507283 -3648836 - MER82 DNA MER2_type -6 647 2 1310 237 106 36 chr1_random 5507299 5507742 -3648377 + L1ME3A LINE L1 5624 6097 -73 2533 168 44 44 chr1_random 5507911 5508275 -3647844 - MER34B LTR ERV1 0 565 199 2832 73 6 8 chr1_random 5508275 5508631 -3647488 + THE1A LTR MaLR 1 355 0 2533 168 44 44 chr1_random 5508631 5508830 -3647289 - MER34B LTR ERV1 -365 200 2 362 294 0 0 chr1_random 5509379 5509464 -3646655 + L2 LINE L2 3210 3294 -19 2938 80 0 11 chr1_random 5510305 5510667 -3645452 - THE1B LTR MaLR -4 360 3 2797 158 19 55 chr1_random 5510682 5511209 -3644910 - LTR54 LTR ERV1 -2 508 1 396 234 11 11 chr1_random 5511215 5511309 -3644810 + LTR37B LTR ERV1 21 114 -354 698 223 51 15 chr1_random 5511315 5511365 -3644754 - MER3 DNA MER1_type -5 204 157 290 26 26 0 chr1_random 5511365 5511404 -3644715 + (TTAA)n Simple_repeat Simple_repeat 1 40 0 698 223 51 15 chr1_random 5511404 5511550 -3644569 - MER3 DNA MER1_type -52 157 1 840 218 182 26 chr1_random 5511553 5511860 -3644259 + LTR37B LTR ERV1 114 468 0 2934 148 14 19 chr1_random 5512277 5512561 -3643558 + MER31A LTR ERV1 1 284 -201 2203 110 0 17 chr1_random 5512561 5512862 -3643257 - AluSx SINE Alu 0 312 17 2934 148 14 19 chr1_random 5512862 5513064 -3643055 + MER31A LTR ERV1 284 485 0 520 261 77 101 chr1_random 5513113 5513527 -3642592 + MER31A-int LTR ERV1 15 418 -4518 981 177 118 70 chr1_random 5513665 5514100 -3642019 + MER31A-int LTR ERV1 889 1302 -3569 323 0 48 0 chr1_random 5514100 5514142 -3641977 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 981 177 118 70 chr1_random 5514142 5514229 -3641890 + MER31A-int LTR ERV1 1302 2120 -2751 9116 210 62 45 chr1_random 5514293 5515398 -3640721 + MER31A-int LTR ERV1 2367 3452 -1484 2534 67 0 0 chr1_random 5515398 5515698 -3640421 + AluSg SINE Alu 1 300 -10 9116 210 62 45 chr1_random 5515698 5517169 -3638950 + MER31A-int LTR ERV1 3452 4917 -19 577 98 61 0 chr1_random 5517169 5517251 -3638868 + MER31A LTR ERV1 8 94 -391 392 112 39 45 chr1_random 5517277 5517455 -3638664 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 1381 138 103 4 chr1_random 5517657 5518029 -3638090 + MER31A LTR ERV1 1 485 0 24 0 0 0 chr1_random 5518547 5518571 -3637548 + AT_rich Low_complexity Low_complexity 1 24 0 313 305 78 43 chr1_random 5519416 5519557 -3636562 - L1ME3A LINE L1 -219 5951 5806 923 213 33 0 chr1_random 5519602 5519785 -3636334 + MER63A DNA MER1_type 21 209 -1 436 292 42 7 chr1_random 5519792 5519936 -3636183 - L1ME3A LINE L1 -367 5803 5655 25 0 0 0 chr1_random 5519983 5520008 -3636111 + AT_rich Low_complexity Low_complexity 1 25 0 340 194 46 65 chr1_random 5520199 5520307 -3635812 + LTR52 LTR ERVL 1 106 -315 308 339 57 15 chr1_random 5520373 5520625 -3635494 + MLT1I LTR MaLR 82 344 -65 21 57 0 0 chr1_random 5520844 5520879 -3635240 + AT_rich Low_complexity Low_complexity 1 35 0 1027 295 100 22 chr1_random 5520980 5521108 -3635011 - L1MEd LINE L1 -1808 4321 4204 732 227 147 67 chr1_random 5521108 5521337 -3634782 + LTR52 LTR ERVL 1 275 -146 1904 163 14 0 chr1_random 5521337 5521632 -3634487 + AluJb SINE Alu 1 299 -13 732 227 147 67 chr1_random 5521632 5521789 -3634330 + LTR52 LTR ERVL 275 418 -3 1027 295 100 22 chr1_random 5521789 5522389 -3633730 - L1MEd LINE L1 -1925 4204 3536 189 0 0 0 chr1_random 5522439 5522460 -3633659 + (TG)n Simple_repeat Simple_repeat 2 22 0 2004 143 0 0 chr1_random 5522460 5522747 -3633372 - AluSx SINE Alu -25 287 1 498 305 52 37 chr1_random 5522795 5522890 -3633229 - L1MEd LINE L1 -2848 3281 3189 2498 127 94 8 chr1_random 5522890 5523284 -3632835 - MSTA LTR MaLR 0 428 1 498 305 52 37 chr1_random 5523284 5523460 -3632659 - L1MEd LINE L1 -2940 3189 3006 255 266 190 24 chr1_random 5523479 5523649 -3632470 - L1MEd LINE L1 -3163 2966 2826 1589 115 0 9 chr1_random 5523649 5523867 -3632252 + AluSx SINE Alu 1 216 -96 255 266 190 24 chr1_random 5523867 5524154 -3631965 - L1MEd LINE L1 -3303 2826 2433 2872 163 22 16 chr1_random 5524183 5524288 -3631831 - MER44D DNA MER2_type -1889 698 595 2497 113 34 3 chr1_random 5524288 5524641 -3631478 - THE1B LTR MaLR 0 364 1 2872 163 22 16 chr1_random 5524641 5525027 -3631092 - MER44D DNA MER2_type -1992 595 204 576 341 48 9 chr1_random 5525025 5525254 -3630865 - MLT1I LTR MaLR -79 330 93 * 183 378 10 10 chr1_random 5527139 5527237 -3628882 - MIR SINE MIR -164 98 1 2484 63 0 3 chr1_random 5527523 5527822 -3628297 - AluY SINE Alu -13 298 1 611 296 72 31 chr1_random 5527891 5528182 -3627937 + MLT1J LTR MaLR 6 308 -203 372 200 188 62 chr1_random 5528272 5528379 -3627740 + MLT1J LTR MaLR 326 461 -50 2328 136 115 18 chr1_random 5528379 5528696 -3627423 + MSTA LTR MaLR 1 364 -64 1883 138 9 59 chr1_random 5528696 5529016 -3627103 - AluSq SINE Alu -9 304 1 2328 136 115 18 chr1_random 5529016 5529088 -3627031 + MSTA LTR MaLR 364 428 0 372 200 188 62 chr1_random 5529088 5529140 -3626979 + MLT1J LTR MaLR 461 505 -6 3376 214 25 30 chr1_random 5529278 5530008 -3626111 - MER21B LTR ERV1 -11 852 127 1198 49 0 0 chr1_random 5530298 5530442 -3625677 - AluY SINE Alu 0 311 168 1881 274 73 17 chr1_random 5530451 5531638 -3624481 - L1ME3A LINE L1 -202 5968 4663 481 292 47 34 chr1_random 5531727 5532410 -3623709 - L1MEd LINE L1 -3669 2460 1820 339 265 64 111 chr1_random 5532500 5533307 -3622812 - L1MEd LINE L1 -4620 1509 740 2104 221 143 74 chr1_random 5533699 5534433 -3621686 + MER21B LTR ERV1 27 811 -52 528 303 42 6 chr1_random 5535224 5535389 -3620730 - MIR SINE MIR -9 253 83 21 0 0 0 chr1_random 5536497 5536518 -3619601 + AT_rich Low_complexity Low_complexity 1 21 0 2067 114 55 170 chr1_random 5536550 5536620 -3619499 - Tigger2a DNA MER2_type -2274 434 358 1526 160 91 14 chr1_random 5536620 5536895 -3619224 - AluJo SINE Alu -16 296 1 2067 114 55 170 chr1_random 5536895 5537114 -3619005 - Tigger2a DNA MER2_type -2350 358 218 1601 12 6 0 chr1_random 5537114 5537313 -3618806 + L1PA4 LINE L1 5974 6173 0 2067 114 55 170 chr1_random 5537313 5537508 -3618611 - Tigger2a DNA MER2_type -2490 218 2 208 38 38 57 chr1_random 5537508 5537561 -3618558 + (TA)n Simple_repeat Simple_repeat 2 53 0 5444 141 27 11 chr1_random 5537588 5537904 -3618215 - L1PA16 LINE L1 -20 6146 5836 2238 120 3 0 chr1_random 5537904 5538212 -3617907 - AluSp SINE Alu -4 309 1 5444 141 27 11 chr1_random 5538212 5538958 -3617161 - L1PA16 LINE L1 -330 5836 5070 282 308 162 3 chr1_random 5539129 5539437 -3616682 + LTR16A LTR ERVL 1 357 -93 201 74 0 0 chr1_random 5539870 5539897 -3616222 + (CAT)n Simple_repeat Simple_repeat 3 29 0 270 56 0 0 chr1_random 5539945 5539981 -3616138 + (TG)n Simple_repeat Simple_repeat 2 37 0 295 151 0 19 chr1_random 5540020 5540073 -3616046 - MLT1B LTR MaLR -2 388 337 284 98 0 98 chr1_random 5540073 5540124 -3615995 - MER75 DNA T2_type 0 514 469 225 208 94 19 chr1_random 5540099 5540152 -3615967 - MER75 DNA T2_type -457 57 1 * 982 200 80 43 chr1_random 5540152 5540464 -3615655 - MLT1B LTR MaLR -52 415 15 23 0 0 0 chr1_random 5541817 5541840 -3614279 + AT_rich Low_complexity Low_complexity 1 23 0 1762 153 11 4 chr1_random 5541912 5542187 -3613932 + AluJo SINE Alu 13 289 -23 414 132 0 0 chr1_random 5542556 5542632 -3613487 + (GA)n Simple_repeat Simple_repeat 1 76 0 478 272 88 19 chr1_random 5542723 5542911 -3613208 - MER77 LTR ERV1 -6 599 423 1337 137 27 18 chr1_random 5542911 5543130 -3612989 + THE1B LTR MaLR 1 221 -143 573 78 0 26 chr1_random 5543130 5543207 -3612912 + THE1B LTR MaLR 147 221 -143 1665 100 0 9 chr1_random 5543207 5543427 -3612692 + THE1B LTR MaLR 147 364 0 928 265 95 22 chr1_random 5543429 5543788 -3612331 - MER77 LTR ERV1 -180 425 41 271 278 0 0 chr1_random 5543873 5543927 -3612192 + MER77 LTR ERV1 543 596 -9 942 179 46 86 chr1_random 5544810 5545090 -3611029 - MER34C LTR ERV1 0 585 317 189 0 0 0 chr1_random 5545306 5545327 -3610792 + (TC)n Simple_repeat Simple_repeat 1 21 0 2193 84 44 0 chr1_random 5545330 5545627 -3610492 - AluSx SINE Alu -2 310 1 358 293 21 24 chr1_random 5545630 5545840 -3610279 - L1MC4a LINE L1 -308 5813 5732 349 271 42 24 chr1_random 5545906 5546072 -3610047 + MER113 DNA MER1_type? 126 294 -227 232 298 8 99 chr1_random 5546166 5546287 -3609832 + MIR SINE MIR 41 150 -112 279 224 0 0 chr1_random 5546289 5546338 -3609781 + AluSp SINE Alu 136 184 -119 1686 97 4 9 chr1_random 5546494 5546720 -3609399 - AluSq SINE Alu -27 286 62 305 56 0 0 chr1_random 5546720 5546756 -3609363 + Alu SINE Alu 15 50 -252 715 293 186 23 chr1_random 5547211 5547813 -3608306 + L2 LINE L2 2576 3294 -19 257 329 30 18 chr1_random 5547897 5548064 -3608055 - L1ME LINE L1 -324 5838 5670 1675 183 7 0 chr1_random 5548218 5548527 -3607592 + AluJb SINE Alu 1 311 0 288 348 56 17 chr1_random 5549799 5549977 -3606142 + MIR SINE MIR 29 213 -49 2900 110 22 10 chr1_random 5550016 5550433 -3605686 - MSTA LTR MaLR -6 422 1 460 314 71 14 chr1_random 5550876 5551086 -3605033 + MIR SINE MIR 32 253 -9 573 231 118 35 chr1_random 5551813 5552042 -3604077 + MIR SINE MIR 15 262 0 1495 169 89 75 chr1_random 5552094 5552455 -3603664 - MLT1B LTR MaLR -4 386 21 238 78 20 20 chr1_random 5553801 5553852 -3602267 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 279 316 0 0 chr1_random 5556105 5556245 -3599874 + (CA)n Simple_repeat Simple_repeat 1 140 0 276 30 0 0 chr1_random 5556253 5556286 -3599833 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 201 132 0 0 chr1_random 5556296 5556334 -3599785 + (CA)n Simple_repeat Simple_repeat 2 39 0 202 343 0 0 chr1_random 5556370 5556443 -3599676 + (CA)n Simple_repeat Simple_repeat 2 74 0 345 24 0 0 chr1_random 5556474 5556516 -3599603 + (CA)n Simple_repeat Simple_repeat 2 43 0 262 313 0 0 chr1_random 5556554 5556653 -3599466 + (CA)n Simple_repeat Simple_repeat 2 100 0 222 176 0 0 chr1_random 5556662 5556713 -3599406 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 215 219 0 0 chr1_random 5556748 5556789 -3599330 + (TCCA)n Simple_repeat Simple_repeat 1 41 0 222 116 0 0 chr1_random 5556843 5556886 -3599233 + (CA)n Simple_repeat Simple_repeat 2 44 0 426 165 0 0 chr1_random 5556887 5556966 -3599153 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 402 79 0 0 chr1_random 5556977 5557040 -3599079 + (CA)n Simple_repeat Simple_repeat 2 64 0 3756 112 13 13 chr1_random 5558409 5558934 -3597185 + MER1A DNA MER1_type 2 526 -1 398 348 48 10 chr1_random 5559093 5559300 -3596819 - MIR SINE MIR -14 248 34 1245 299 101 48 chr1_random 5559704 5560549 -3595570 - L2 LINE L2 -1 3312 2387 2264 125 39 25 chr1_random 5560549 5560908 -3595211 + THE1B LTR MaLR 1 364 0 1245 299 101 48 chr1_random 5560908 5561128 -3594991 - L2 LINE L2 -926 2387 2180 1420 225 131 69 chr1_random 5561131 5561656 -3594463 + MLT1E LTR MaLR 2 651 -3 1823 151 0 7 chr1_random 5561708 5562015 -3594104 + AluJo SINE Alu 3 307 0 316 305 12 0 chr1_random 5562725 5562807 -3593312 - L2 LINE L2 -1 3271 3189 518 127 25 0 chr1_random 5563019 5563098 -3593021 + FRAM SINE Alu 41 121 -55 396 298 0 8 chr1_random 5563561 5563682 -3592437 - L2 LINE L2 -9 3304 3185 802 182 11 11 chr1_random 5566122 5566309 -3589810 + MER53 DNA DNA 3 189 0 2262 110 38 41 chr1_random 5566757 5567122 -3588997 + THE1B LTR MaLR 1 364 0 5337 223 59 35 chr1_random 5567639 5567706 -3588413 - L1MD1 LINE L1 0 6242 6178 2040 125 0 3 chr1_random 5567706 5568009 -3588110 + AluSx SINE Alu 1 302 -10 5337 223 59 35 chr1_random 5568009 5568623 -3587496 - L1MD1 LINE L1 -64 6178 5580 2032 113 0 3 chr1_random 5568623 5569066 -3587053 + AluSq SINE Alu 1 442 0 5337 223 59 35 chr1_random 5569066 5569733 -3586386 - L1MD1 LINE L1 -662 5580 4930 2162 171 38 53 chr1_random 5569733 5570207 -3585912 - MLT1C LTR MaLR 0 467 1 5337 223 59 35 chr1_random 5570207 5571526 -3584593 - L1MD1 LINE L1 -1312 4930 3510 558 288 121 77 chr1_random 5571626 5572329 -3583790 + L1M4c LINE L1 974 1922 -821 300 296 96 45 chr1_random 5572383 5572697 -3583422 + L1ME LINE L1 5488 5817 -353 422 271 49 53 chr1_random 5573811 5574227 -3581892 + L1ME3A LINE L1 5078 5491 -679 396 277 120 11 chr1_random 5574329 5574513 -3581606 + L1ME3A LINE L1 5741 5944 -226 300 327 124 53 chr1_random 5574749 5575204 -3580915 - L2 LINE L2 -640 2674 2160 183 42 0 0 chr1_random 5575204 5575228 -3580891 + (GA)n Simple_repeat Simple_repeat 1 24 0 300 327 124 53 chr1_random 5575228 5575399 -3580720 - L2 LINE L2 -1154 2160 2003 827 242 92 81 chr1_random 5575499 5575945 -3580174 - MER39 LTR ERV1 0 707 257 259 315 22 33 chr1_random 5576087 5576179 -3579940 + L2 LINE L2 3223 3313 0 180 219 0 0 chr1_random 5577063 5577104 -3579015 + MIR SINE MIR 170 210 -52 390 42 0 0 chr1_random 5577360 5577408 -3578711 + (CA)n Simple_repeat Simple_repeat 1 48 0 365 274 73 24 chr1_random 5577414 5577538 -3578581 - MIR SINE MIR -93 169 40 21 0 0 0 chr1_random 5577976 5577997 -3578122 + AT_rich Low_complexity Low_complexity 1 21 0 2203 92 3 0 chr1_random 5579007 5579302 -3576817 + AluSp SINE Alu 1 296 -17 878 205 80 53 chr1_random 5581076 5581406 -3574713 + MER31B LTR ERV1 7 514 0 2689 113 0 0 chr1_random 5582997 5583361 -3572758 + THE1B LTR MaLR 1 364 0 192 224 0 69 chr1_random 5584694 5584752 -3571367 + L2 LINE L2 1918 1971 -1343 221 300 168 45 chr1_random 5584809 5585119 -3571000 + L2 LINE L2 2533 2880 -434 353 296 16 92 chr1_random 5585212 5585462 -3570657 + L2 LINE L2 3082 3312 -1 238 259 94 24 chr1_random 5585467 5585552 -3570567 + MIR SINE MIR 172 262 0 201 243 54 27 chr1_random 5586450 5586524 -3569595 - MIR3 SINE MIR -18 190 115 184 297 135 14 chr1_random 5587076 5587150 -3568969 + MIR SINE MIR 29 111 -151 1998 220 34 52 chr1_random 5587183 5587687 -3568432 + LTR42 LTR ERVL 1 495 0 237 269 0 77 chr1_random 5587698 5587802 -3568317 - MIR SINE MIR -60 202 107 2417 53 3 3 chr1_random 5590477 5590780 -3565339 - AluY SINE Alu -6 305 3 1647 169 7 13 chr1_random 5592425 5592726 -3563393 - AluJo SINE Alu -13 299 1 379 231 62 46 chr1_random 5593394 5593524 -3562595 + MIR SINE MIR 20 151 -111 214 259 259 21 chr1_random 5593597 5593740 -3562379 + MIR SINE MIR 76 252 -10 195 227 160 80 chr1_random 5595832 5595982 -3560137 - MIR SINE MIR -17 245 84 22 0 0 0 chr1_random 5796861 5796883 -3359236 + GC_rich Low_complexity Low_complexity 1 22 0 282 209 45 0 chr1_random 5797958 5798025 -3358094 - ERVL LTR ERVL -469 5295 5226 737 183 21 18 chr1_random 5798088 5798372 -3357747 - L1MC2 LINE L1 -2 6342 5961 1460 138 20 0 chr1_random 5799135 5799389 -3356730 - L1MC2 LINE L1 -365 5979 5721 1275 132 6 0 chr1_random 5799396 5799611 -3356508 - AluSg/x SINE Alu 0 343 128 821 314 85 54 chr1_random 5799856 5800827 -3355292 - ERVL LTR ERVL -779 4875 3824 2203 148 0 0 chr1_random 5800827 5801137 -3354982 - AluSx SINE Alu -2 310 1 821 314 85 54 chr1_random 5801137 5801393 -3354726 - ERVL LTR ERVL -1830 3824 3577 2037 132 3 6 chr1_random 5801876 5802187 -3353932 + AluSg SINE Alu 1 310 0 303 82 90 8 chr1_random 5802866 5802988 -3353131 + (TA)n Simple_repeat Simple_repeat 1 132 0 2251 100 3 0 chr1_random 5802988 5803277 -3352842 - AluSp SINE Alu -23 290 1 530 186 0 0 chr1_random 5803526 5803628 -3352491 - AluJb SINE Alu -3 309 208 1352 132 0 5 chr1_random 5804088 5804285 -3351834 - AluSp SINE Alu 0 313 118 221 296 28 0 chr1_random 5804753 5804824 -3351295 - MER5B DNA MER1_type -10 168 96 2320 78 10 3 chr1_random 5804909 5805202 -3350917 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr1_random 5805742 5805763 -3350356 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1_random 5806083 5806108 -3350011 + AT_rich Low_complexity Low_complexity 1 25 0 446 269 155 19 chr1_random 5806187 5806458 -3349661 + L1ME LINE L1 5409 5716 -405 1069 295 82 51 chr1_random 5806627 5807681 -3348438 + L1MEd LINE L1 2 1088 -5031 725 301 39 18 chr1_random 5807872 5808330 -3347789 + L1M4 LINE L1 3521 3988 -2158 363 183 135 29 chr1_random 5808343 5808447 -3347672 - LTR33A LTR ERVL -24 499 385 36 0 0 0 chr1_random 5808447 5808483 -3347636 + AT_rich Low_complexity Low_complexity 1 36 0 302 309 21 0 chr1_random 5809186 5809283 -3346836 + MER81 DNA DNA 1 99 -15 947 128 11 11 chr1_random 5809862 5810042 -3346077 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 261 54 0 27 chr1_random 5810047 5810084 -3346035 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 990 188 11 0 chr1_random 5810084 5810260 -3345859 - AluJo SINE Alu -1 311 134 509 219 151 8 chr1_random 5810296 5810415 -3345704 + MER5B DNA MER1_type 2 137 -41 2320 116 22 19 chr1_random 5810496 5810859 -3345260 - THE1B LTR MaLR 0 364 1 398 208 118 62 chr1_random 5810987 5811131 -3344988 + MER5B DNA MER1_type 22 173 -5 871 130 0 0 chr1_random 5812245 5812360 -3343759 - AluJo SINE Alu -182 130 16 23 0 0 0 chr1_random 5812443 5812466 -3343653 + AT_rich Low_complexity Low_complexity 1 23 0 751 292 101 43 chr1_random 5812882 5813246 -3342873 + L1ME4a LINE L1 5554 5960 -161 503 135 22 0 chr1_random 5813246 5813335 -3342784 - L1MA6 LINE L1 0 6300 6210 751 292 101 43 chr1_random 5813335 5813507 -3342612 + L1ME4a LINE L1 5960 6121 0 1754 187 32 9 chr1_random 5814318 5814666 -3341453 - MLT1A1 LTR MaLR 0 365 10 377 320 117 18 chr1_random 5814982 5815204 -3340915 - MIR SINE MIR 0 262 19 7645 53 1 8 chr1_random 5815762 5817510 -3338609 + L1PA5 LINE L1 4409 6150 -4 738 170 118 26 chr1_random 5817582 5817735 -3338384 - FAM SINE Alu -8 167 1 13311 129 32 85 chr1_random 5818060 5820927 -3335192 - Tigger2 DNA MER2_type -2 2716 2 1503 182 44 3 chr1_random 5820929 5821247 -3334872 + MER46B DNA MER2_type 23 228 -8 532 238 131 12 chr1_random 5823586 5823754 -3332365 + MER5A DNA MER1_type 2 189 0 2285 101 0 0 chr1_random 5824911 5825208 -3330911 - AluSq SINE Alu -16 297 1 3237 33 0 14 chr1_random 5825933 5826355 -3329764 - L1P LINE L1 -1132 5014 4599 * 3559 16 0 0 chr1_random 5826351 5826778 -3329341 + L1HS LINE L1 5729 6155 0 195 42 0 0 chr1_random 5826780 5826804 -3329315 + (A)n Simple_repeat Simple_repeat 1 24 0 326 264 0 11 chr1_random 5826829 5826920 -3329199 + L1MC4 LINE L1 6606 6695 -1347 819 192 19 0 chr1_random 5827225 5827381 -3328738 - AluJ SINE Alu -14 298 140 324 195 13 13 chr1_random 5827399 5827476 -3328643 + MER4B-int LTR ERV1 5766 5842 -916 1818 122 93 0 chr1_random 5827511 5827781 -3328338 - AluSx SINE Alu -17 295 1 21 0 0 0 chr1_random 5828746 5828767 -3327352 + GC_rich Low_complexity Low_complexity 1 21 0 288 217 17 0 chr1_random 5830249 5830309 -3325810 - MIR3 SINE MIR -47 161 101 777 169 0 0 chr1_random 5830438 5830568 -3325551 + AluJb SINE Alu 168 297 -15 341 136 0 0 chr1_random 5831005 5831066 -3325053 - FLAM SINE Alu -2 131 78 579 244 157 49 chr1_random 5831106 5831223 -3324896 + L1M4 LINE L1 4842 4945 -1201 1968 153 3 0 chr1_random 5831223 5831524 -3324595 + AluJb SINE Alu 1 302 -10 579 244 157 49 chr1_random 5831524 5831677 -3324442 + L1M4 LINE L1 4945 5080 -1066 1792 168 3 7 chr1_random 5831677 5831975 -3324144 + AluJb SINE Alu 1 297 -15 579 244 157 49 chr1_random 5831975 5832150 -3323969 + L1M4 LINE L1 5080 5336 -810 1897 110 38 0 chr1_random 5832921 5833226 -3322893 - AluSx SINE Alu 0 325 11 528 276 71 41 chr1_random 5833861 5833944 -3322175 + L1M4 LINE L1 3030 3109 -3037 2049 121 0 13 chr1_random 5833944 5834251 -3321868 + AluSx SINE Alu 1 303 -9 528 276 71 41 chr1_random 5834251 5834602 -3321517 + L1M4 LINE L1 3109 3477 -2669 226 233 0 17 chr1_random 5834710 5834770 -3321349 + GA-rich Low_complexity Low_complexity 2 60 0 492 281 53 9 chr1_random 5834779 5835007 -3321112 + L1M4 LINE L1 3954 4191 -1955 * 7459 217 56 71 chr1_random 5834993 5837351 -3318768 + L1MDa LINE L1 29 2374 -4347 192 40 0 0 chr1_random 5837351 5837376 -3318743 + (TA)n Simple_repeat Simple_repeat 2 26 0 7459 217 56 71 chr1_random 5837376 5837844 -3318275 + L1MDa LINE L1 2374 2848 -3873 218 315 68 27 chr1_random 5839113 5839259 -3316860 - MIR3 SINE MIR -7 201 50 2446 101 0 0 chr1_random 5839813 5840121 -3315998 - AluSx SINE Alu -4 308 1 683 179 31 107 chr1_random 5840820 5841016 -3315103 + MIR SINE MIR 7 187 -75 199 208 62 0 chr1_random 5841396 5841444 -3314675 + L2 LINE L2 2932 2982 -290 189 0 0 0 chr1_random 5843209 5843230 -3312889 + (A)n Simple_repeat Simple_repeat 1 21 0 659 258 90 33 chr1_random 5843995 5844239 -3311880 + MIR SINE MIR 5 262 0 555 262 8 8 chr1_random 5844966 5845088 -3311031 + L2 LINE L2 3188 3309 -4 421 248 116 16 chr1_random 5845221 5845342 -3310777 - L2 LINE L2 -6 3307 3175 296 236 32 19 chr1_random 5845747 5845756 -3310363 + (TA)n Simple_repeat Simple_repeat 2 9 -151 1916 158 0 7 chr1_random 5845756 5846047 -3310072 + AluJo SINE Alu 1 289 -23 296 236 32 19 chr1_random 5846047 5846194 -3309925 + (TA)n Simple_repeat Simple_repeat 9 160 0 2156 130 0 3 chr1_random 5847245 5847545 -3308574 + AluSg SINE Alu 1 299 -11 1673 174 0 21 chr1_random 5848048 5848360 -3307759 + AluSx SINE Alu 1 306 0 1017 296 105 29 chr1_random 5848469 5848946 -3307173 + LTR33 LTR ERVL 1 513 -8 235 238 29 19 chr1_random 5851643 5851748 -3304371 + (TA)n Simple_repeat Simple_repeat 2 107 0 188 393 44 38 chr1_random 5852866 5853049 -3303070 - MIR SINE MIR -65 197 14 2045 136 0 67 chr1_random 5853865 5854226 -3301893 - MER1B DNA MER1_type 0 337 1 231 305 39 7 chr1_random 5854379 5854533 -3301586 - MER46C DNA MER2_type -8 330 172 1993 98 64 20 chr1_random 5854599 5854896 -3301223 - AluSx SINE Alu 0 312 3 1734 187 35 174 chr1_random 5854896 5855111 -3301008 - L1 LINE L1 -2576 3570 3327 2548 20 0 88 chr1_random 5855111 5855452 -3300667 - AluY SINE Alu 0 311 1 1734 187 35 174 chr1_random 5855452 5855613 -3300506 - L1 LINE L1 -2819 3327 3145 255 258 32 32 chr1_random 5855613 5855706 -3300413 + AluSq/x SINE Alu 41 133 -170 1734 187 35 174 chr1_random 5855706 5856192 -3299927 - L1 LINE L1 -3001 3145 2748 1658 189 9 3 chr1_random 5856206 5856534 -3299585 - L1MA4 LINE L1 -6 6294 5965 984 284 122 5 chr1_random 5856630 5857186 -3298933 - L1M4 LINE L1 -1231 4915 4295 1390 38 0 0 chr1_random 5858480 5858639 -3297480 + L1PA4 LINE L1 5997 6155 0 208 186 105 70 chr1_random 5859652 5859738 -3296381 + L2 LINE L2 3174 3262 -10 180 0 0 0 chr1_random 5859836 5859856 -3296263 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2284 96 3 3 chr1_random 5860103 5860416 -3295703 + AluSq SINE Alu 1 313 0 270 364 41 8 chr1_random 5860786 5860907 -3295212 + L2 LINE L2 3148 3272 0 1944 127 0 3 chr1_random 5862001 5862285 -3293834 + AluSq SINE Alu 1 283 -30 189 94 0 0 chr1_random 5862378 5862410 -3293709 + (A)n Simple_repeat Simple_repeat 1 32 0 295 111 0 0 chr1_random 5862413 5862458 -3293661 - AluSq/x SINE Alu -199 104 60 1635 174 0 11 chr1_random 5862458 5862734 -3293385 + AluJb SINE Alu 22 294 -18 2600 58 0 0 chr1_random 5862738 5863047 -3293072 + AluY SINE Alu 1 309 -2 449 244 57 24 chr1_random 5863281 5863404 -3292715 - MIR3 SINE MIR -17 191 65 21 0 0 0 chr1_random 5864010 5864031 -3292088 + AT_rich Low_complexity Low_complexity 1 21 0 232 288 53 18 chr1_random 5864044 5864214 -3291905 - MIR3 SINE MIR -3 205 30 1284 51 0 19 chr1_random 5865065 5865222 -3290897 + L1PA2 LINE L1 6002 6155 0 557 225 92 29 chr1_random 5865226 5865399 -3290720 + MLT1E3-int LTR MaLR 1100 1283 -88 580 270 160 14 chr1_random 5865529 5866002 -3290117 + MLT1E3 LTR MaLR 13 626 0 333 290 28 35 chr1_random 5866567 5866712 -3289407 + L1MB8 LINE L1 5998 6141 -37 291 239 26 35 chr1_random 5866825 5866938 -3289181 - L1ME4a LINE L1 -43 6078 5967 325 301 55 18 chr1_random 5866950 5867113 -3289006 - HAL1b LINE L1 0 1348 1180 217 143 16 48 chr1_random 5867160 5867223 -3288896 + (TA)n Simple_repeat Simple_repeat 2 62 0 303 271 108 23 chr1_random 5867260 5867389 -3288730 - HAL1b LINE L1 -238 1110 971 714 174 154 0 chr1_random 5867459 5867608 -3288511 - AluSg/x SINE Alu -4 308 137 453 292 64 46 chr1_random 5867696 5867915 -3288204 - L1ME2 LINE L1 -119 6045 5823 25 0 0 0 chr1_random 5868727 5868752 -3287367 + AT_rich Low_complexity Low_complexity 1 25 0 283 289 107 16 chr1_random 5869230 5869351 -3286768 + L2 LINE L2 3141 3272 0 5138 22 0 0 chr1_random 5869644 5870199 -3285920 + L1PA3 LINE L1 5597 6151 -4 236 167 379 0 chr1_random 5870245 5870311 -3285808 - MER31A LTR ERV1 -394 91 1 8988 172 49 48 chr1_random 5870317 5871140 -3284979 - MER31A-int LTR ERV1 -26 5853 5033 2099 100 3 7 chr1_random 5871140 5871430 -3284689 - AluSg SINE Alu -12 298 10 8988 172 49 48 chr1_random 5871430 5873142 -3282977 - MER31A-int LTR ERV1 -846 5033 3077 1433 178 128 101 chr1_random 5873188 5873614 -3282505 - MER31A-int LTR ERV1 -3422 1514 1066 2042 102 71 14 chr1_random 5873614 5873909 -3282210 + AluSx SINE Alu 1 312 0 1433 178 128 101 chr1_random 5873909 5874094 -3282025 - MER31A-int LTR ERV1 -3870 1066 887 648 219 19 71 chr1_random 5874253 5874463 -3281656 - MER31A-int LTR ERV1 -4537 399 201 * 751 199 61 131 chr1_random 5874430 5874727 -3281392 - MER31A-int LTR ERV1 -4646 290 15 2897 136 56 7 chr1_random 5874774 5875236 -3280883 - MER31A LTR ERV1 0 485 1 2132 105 0 17 chr1_random 5875492 5875788 -3280331 - AluSq SINE Alu -22 291 1 2503 59 3 3 chr1_random 5876164 5876471 -3279648 + AluY SINE Alu 1 307 -4 263 336 59 38 chr1_random 5876961 5877250 -3278869 - HAL1 LINE L1 -836 1671 1377 22 0 0 0 chr1_random 5877450 5877472 -3278647 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1_random 5877485 5877505 -3278614 + (TC)n Simple_repeat Simple_repeat 1 20 0 7287 65 10 2 chr1_random 5877610 5878866 -3277253 - L1PA6 LINE L1 -4 6150 4890 1406 212 13 0 chr1_random 5879203 5879439 -3276680 - MER8 DNA MER2_type 0 239 1 281 221 0 0 chr1_random 5879468 5879536 -3276583 - L1MC4 LINE L1 -1339 6703 6636 229 65 0 0 chr1_random 5879536 5879582 -3276537 + LTR66 LTR ERVL 394 439 -171 1987 190 5 42 chr1_random 5879596 5880001 -3276118 - MLT1B LTR MaLR 0 390 1 25 75 0 0 chr1_random 5880025 5880078 -3276041 + AT_rich Low_complexity Low_complexity 1 53 0 2019 136 20 0 chr1_random 5880702 5880996 -3275123 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr1_random 5881087 5881109 -3275010 + AT_rich Low_complexity Low_complexity 1 22 0 614 285 50 32 chr1_random 5881290 5881511 -3274608 + MIR SINE MIR 20 244 -18 5809 70 18 4 chr1_random 5882028 5882761 -3273358 - HERVL LTR ERVL -727 4927 4185 729 123 9 0 chr1_random 5883027 5883141 -3272978 - THE1A LTR MaLR 0 355 241 262 389 92 22 chr1_random 5885424 5885828 -3270291 + L2 LINE L2 2544 2975 -339 303 98 78 0 chr1_random 5886180 5886231 -3269888 - MLT2A1 LTR ERVL 0 444 390 3051 75 18 13 chr1_random 5886292 5886690 -3269429 - MLT2A1 LTR ERVL -44 400 1 5308 82 15 20 chr1_random 5886690 5887443 -3268676 - HERVL-A1 LTR ERVL 0 5654 4906 207 0 0 0 chr1_random 5888000 5888023 -3268096 + (TTA)n Simple_repeat Simple_repeat 3 25 0 4687 29 0 0 chr1_random 5888023 5888534 -3267585 - L1PA5 LINE L1 -18 6136 5626 1721 158 26 0 chr1_random 5888915 5889181 -3266938 + AluSx SINE Alu 1 273 -39 630 135 0 0 chr1_random 5889181 5889285 -3266834 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 616 39 0 26 chr1_random 5889756 5889833 -3266286 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1042 150 0 59 chr1_random 5890293 5890480 -3265639 + AluSg/x SINE Alu 134 309 -3 2013 169 0 15 chr1_random 5890714 5891057 -3265062 - MER72 LTR ERV1 -221 501 164 2686 42 0 0 chr1_random 5891064 5891372 -3264747 - AluY SINE Alu -3 308 1 442 20 0 0 chr1_random 5891387 5891437 -3264682 - MER51D LTR ERV1 -2 655 606 291 85 0 0 chr1_random 5891744 5891791 -3264328 + (CA)n Simple_repeat Simple_repeat 1 47 0 351 297 74 0 chr1_random 5892724 5892872 -3263247 - MER103 DNA DNA 0 166 8 1765 122 80 21 chr1_random 5893253 5893541 -3262578 + AluSq SINE Alu 1 305 -8 26 0 0 0 chr1_random 5895912 5895938 -3260181 + AT_rich Low_complexity Low_complexity 1 26 0 230 267 70 47 chr1_random 5896314 5896400 -3259719 + MER102b DNA MER1_type 251 338 -3 423 338 98 59 chr1_random 5896583 5896941 -3259178 - L2 LINE L2 -6 3266 2895 31 68 0 0 chr1_random 5897103 5897162 -3258957 + AT_rich Low_complexity Low_complexity 1 59 0 185 204 41 0 chr1_random 5898241 5898290 -3257829 + MIR SINE MIR 103 153 -109 243 330 28 0 chr1_random 5899349 5899458 -3256661 - MIR3 SINE MIR -31 177 66 411 113 0 0 chr1_random 5903075 5903146 -3252973 + (GA)n Simple_repeat Simple_repeat 1 71 0 266 163 38 12 chr1_random 5903547 5903627 -3252492 + CT-rich Low_complexity Low_complexity 2 83 0 228 35 0 0 chr1_random 5904719 5904748 -3251371 + (CA)n Simple_repeat Simple_repeat 2 30 0 293 125 18 0 chr1_random 5906259 5906315 -3249804 + GA-rich Low_complexity Low_complexity 1 57 0 414 120 0 0 chr1_random 5907808 5907883 -3248236 + (GA)n Simple_repeat Simple_repeat 1 75 0 224 136 45 15 chr1_random 5908285 5908351 -3247768 + CT-rich Low_complexity Low_complexity 1 68 0 1830 155 0 0 chr1_random 5909163 5909434 -3246685 + AluSx SINE Alu 38 308 -4 276 234 43 43 chr1_random 5912538 5912632 -3243487 + L1MB5 LINE L1 6071 6164 -10 406 279 7 14 chr1_random 5913633 5913780 -3242339 - MIR SINE MIR -21 241 96 1744 173 10 0 chr1_random 5913946 5914253 -3241866 - AluSg SINE Alu 0 310 1 205 280 118 0 chr1_random 5918297 5918390 -3237729 - MER5A DNA MER1_type -67 122 19 289 253 44 0 chr1_random 5918427 5918516 -3237603 - MIR SINE MIR -67 141 47 2038 152 10 0 chr1_random 5918713 5919016 -3237103 - AluJo SINE Alu -6 306 1 216 0 0 0 chr1_random 5919025 5919049 -3237070 + (T)n Simple_repeat Simple_repeat 1 24 0 1114 211 0 16 chr1_random 5919118 5919364 -3236755 - L1MB7 LINE L1 -26 6158 5917 * 4379 174 47 23 chr1_random 5919352 5920587 -3235532 + L1MB8 LINE L1 4903 6172 -6 354 336 48 7 chr1_random 5920669 5920815 -3235304 - MIR3 SINE MIR -39 169 18 2319 116 0 0 chr1_random 5921641 5921952 -3234167 + AluSx SINE Alu 1 311 -1 206 232 14 43 chr1_random 5922187 5922256 -3233863 - L2 LINE L2 -1 3312 3246 386 209 29 137 chr1_random 5923674 5923980 -3232139 - L2 LINE L2 0 3313 3041 182 266 16 16 chr1_random 5924039 5924103 -3232016 + MIR SINE MIR 90 153 -109 234 0 0 0 chr1_random 5924533 5924559 -3231560 + (CA)n Simple_repeat Simple_repeat 1 26 0 480 299 91 23 chr1_random 5924734 5924955 -3231164 + MIR SINE MIR 21 256 -6 293 279 23 12 chr1_random 5925751 5925837 -3230282 + L2 LINE L2 3227 3313 0 2419 96 0 0 chr1_random 5927672 5927973 -3228146 + AluSg SINE Alu 1 301 -9 537 273 40 11 chr1_random 5928619 5928795 -3227324 - MIR SINE MIR 0 262 82 330 264 0 22 chr1_random 5928795 5928886 -3227233 + L1MC4 LINE L1 6615 6703 -1339 2491 70 0 0 chr1_random 5928977 5929275 -3226844 - AluY SINE Alu -7 304 7 292 284 43 7 chr1_random 5929355 5929496 -3226623 - L1M4 LINE L1 -3797 2349 2204 2111 119 3 3 chr1_random 5929758 5930053 -3226066 - AluSq SINE Alu -18 295 1 2027 138 0 7 chr1_random 5930293 5930625 -3225494 - AluSx SINE Alu 0 312 1 671 235 30 25 chr1_random 5931023 5931223 -3224896 + L2 LINE L2 3109 3309 -4 305 271 83 14 chr1_random 5931249 5931393 -3224726 - HAL1b LINE L1 -798 550 397 1089 177 16 0 chr1_random 5931643 5931829 -3224290 + MER5A DNA MER1_type 1 189 0 950 137 4 26 chr1_random 5932596 5932845 -3223274 + AluSx SINE Alu 1 301 -11 411 186 0 0 chr1_random 5932845 5932915 -3223204 - L1MC3 LINE L1 -14 7771 7702 2121 102 11 3 chr1_random 5932974 5933259 -3222860 - AluSp SINE Alu -26 287 1 192 304 76 0 chr1_random 5933391 5933470 -3222649 - L2 LINE L2 -20 3252 3168 559 107 0 0 chr1_random 5933562 5933637 -3222482 - AluJ/FLAM SINE Alu -235 77 3 4617 151 41 39 chr1_random 5933661 5934545 -3221574 - L1MB3 LINE L1 -2 6181 5298 1952 130 18 0 chr1_random 5934545 5934829 -3221290 - AluSq SINE Alu -24 289 1 4617 151 41 39 chr1_random 5934829 5934866 -3221253 - L1MB3 LINE L1 -885 5298 5263 1371 176 19 6 chr1_random 5934837 5935114 -3221005 + L1MB3 LINE L1 5665 5948 -235 * 1783 234 28 2 chr1_random 5935113 5935548 -3220571 - L1MB3 LINE L1 -872 5274 4829 590 200 34 63 chr1_random 5936090 5936265 -3219854 - L1MB8 LINE L1 -5 6173 6004 1464 179 53 10 chr1_random 5936547 5936849 -3219270 - L1MA9 LINE L1 -39 6273 5959 22 35 0 0 chr1_random 5936852 5936881 -3219238 + AT_rich Low_complexity Low_complexity 1 29 0 945 161 20 0 chr1_random 5936884 5937033 -3219086 - AluJb SINE Alu -25 287 136 777 164 0 61 chr1_random 5937033 5937198 -3218921 - L1MA9 LINE L1 -344 5968 5814 228 250 0 0 chr1_random 5937203 5937251 -3218868 - MIR SINE MIR -75 133 86 520 308 75 23 chr1_random 5937262 5937528 -3218591 + MARNA DNA Mariner 77 356 -230 1968 184 13 29 chr1_random 5937647 5937804 -3218315 + MLT1B LTR MaLR 1 159 -231 2268 110 7 0 chr1_random 5937804 5938103 -3218016 - AluSq SINE Alu -12 301 1 1968 184 13 29 chr1_random 5938103 5938330 -3217789 + MLT1B LTR MaLR 159 379 -11 611 325 59 4 chr1_random 5938827 5939064 -3217055 + MIR SINE MIR 4 253 -9 258 325 24 8 chr1_random 5939067 5939190 -3216929 - L2 LINE L2 -520 2794 2670 1618 188 23 2 chr1_random 5939820 5940157 -3215962 - L1MB2 LINE L1 -1 6188 5839 457 283 34 40 chr1_random 5940997 5941174 -3214945 + MIR3 SINE MIR 30 205 -3 500 294 54 54 chr1_random 5941348 5941435 -3214684 - MIR SINE MIR -14 248 162 444 118 0 0 chr1_random 5941435 5941503 -3214616 + (TA)n Simple_repeat Simple_repeat 1 68 0 2265 108 0 0 chr1_random 5941507 5941795 -3214324 - AluSg SINE Alu -22 288 1 500 294 54 54 chr1_random 5941795 5941923 -3214196 - MIR SINE MIR -102 160 28 1585 179 0 26 chr1_random 5942088 5942400 -3213719 + AluJo SINE Alu 6 309 -3 2340 89 3 0 chr1_random 5942454 5942745 -3213374 - AluY SINE Alu -19 292 1 1845 166 3 0 chr1_random 5943243 5943544 -3212575 + AluSx SINE Alu 1 302 -10 244 297 0 0 chr1_random 5943595 5943669 -3212450 - L1MB2 LINE L1 -307 5814 5741 225 0 0 0 chr1_random 5943675 5943700 -3212419 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 306 0 0 0 chr1_random 5943699 5943733 -3212386 + (CA)n Simple_repeat Simple_repeat 1 34 0 2130 113 7 10 chr1_random 5943745 5944045 -3212074 - AluSx SINE Alu -13 299 1 496 225 7 53 chr1_random 5944381 5944532 -3211587 - L1ME4a LINE L1 -16 6105 5962 191 88 29 0 chr1_random 5944549 5944583 -3211536 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 2486 143 7 28 chr1_random 5945841 5946218 -3209901 - L1PA16 LINE L1 -13 6153 5784 1715 161 0 82 chr1_random 5946218 5946398 -3209721 - AluJo SINE Alu -9 303 161 1963 130 31 17 chr1_random 5946398 5946690 -3209429 - AluSq SINE Alu -17 296 1 1715 161 0 82 chr1_random 5946690 5946839 -3209280 - AluJo SINE Alu -151 161 1 2486 143 7 28 chr1_random 5946839 5946886 -3209233 - L1PA16 LINE L1 -382 5784 5738 343 363 79 21 chr1_random 5946980 5947220 -3208899 - L2 LINE L2 -8 3264 3011 458 288 67 41 chr1_random 5947222 5947489 -3208630 - MLT1L LTR MaLR -1 614 237 451 305 82 57 chr1_random 5947635 5948062 -3208057 - L2 LINE L2 -264 3008 2553 282 270 95 14 chr1_random 5948560 5948634 -3207485 - L2 LINE L2 -5 3267 3188 2023 136 0 3 chr1_random 5948793 5949080 -3207039 - AluSx SINE Alu -26 286 1 187 319 181 0 chr1_random 5949800 5949916 -3206203 - L2 LINE L2 -475 2839 2703 1363 193 68 0 chr1_random 5949927 5950248 -3205871 - L1MB3 LINE L1 -2 6181 5839 272 267 19 138 chr1_random 5950259 5950469 -3205650 - L2 LINE L2 -839 2475 2291 1335 255 99 43 chr1_random 5950470 5950983 -3205136 - MLT1H1 LTR MaLR 0 555 14 205 303 0 30 chr1_random 5951021 5951087 -3205032 + CT-rich Low_complexity Low_complexity 1 64 0 1130 275 167 46 chr1_random 5951087 5952207 -3203912 - L2 LINE L2 -5 3308 2036 1503 136 90 13 chr1_random 5952238 5952465 -3203654 + MER2 DNA MER2_type 22 279 -66 2192 111 9 16 chr1_random 5952465 5952780 -3203339 - AluSq SINE Alu 0 313 1 1503 136 90 13 chr1_random 5952780 5952853 -3203266 + MER2 DNA MER2_type 279 345 0 1494 255 99 48 chr1_random 5952899 5953463 -3202656 - MLT1E LTR MaLR 0 593 1 253 246 115 0 chr1_random 5953617 5953719 -3202400 - MIR SINE MIR -38 224 109 541 306 80 20 chr1_random 5954776 5955224 -3200895 - L1ME4a LINE L1 0 6121 5647 29 0 0 0 chr1_random 5955331 5955360 -3200759 + AT_rich Low_complexity Low_complexity 1 29 0 298 161 48 32 chr1_random 5955556 5955618 -3200501 + MER20 DNA MER1_type 5 67 -152 33 0 0 0 chr1_random 5955618 5955651 -3200468 + AT_rich Low_complexity Low_complexity 1 33 0 872 235 9 0 chr1_random 5955658 5955871 -3200248 - L1MA4 LINE L1 -15 6285 6071 364 158 85 0 chr1_random 5955896 5955978 -3200141 + MER20 DNA MER1_type 119 207 -12 1644 171 16 32 chr1_random 5956038 5956347 -3199772 + AluJo SINE Alu 1 304 -8 261 0 0 0 chr1_random 5956348 5956377 -3199742 + (TA)n Simple_repeat Simple_repeat 1 29 0 2274 125 0 0 chr1_random 5956377 5956680 -3199439 - AluSq SINE Alu -10 303 1 338 307 88 7 chr1_random 5956840 5956977 -3199142 - MER5A DNA MER1_type -4 185 38 285 228 15 81 chr1_random 5957091 5957227 -3198892 - L1ME LINE L1 -319 5802 5676 803 303 114 12 chr1_random 5957715 5958216 -3197903 + L1ME3A LINE L1 5411 5962 -208 1659 181 25 33 chr1_random 5958775 5959140 -3196979 + MLT1A1 LTR MaLR 1 362 -3 260 301 48 0 chr1_random 5959302 5959385 -3196734 - MER91B DNA MER1_type 0 190 104 282 243 42 149 chr1_random 5960518 5960584 -3195535 + L2 LINE L2 2702 2773 -541 2300 100 0 0 chr1_random 5960584 5960874 -3195245 - AluSq SINE Alu -23 290 1 282 243 42 149 chr1_random 5960874 5961095 -3195024 + L2 LINE L2 2773 2958 -356 488 208 231 0 chr1_random 5961924 5961967 -3194152 + MER58C DNA MER1_type 56 88 -2332 180 0 0 0 chr1_random 5961967 5961987 -3194132 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 288 0 0 0 chr1_random 5961986 5962018 -3194101 + (CA)n Simple_repeat Simple_repeat 1 32 0 488 208 231 0 chr1_random 5961987 5962104 -3194015 + MER58C DNA MER1_type 88 215 0 638 309 98 6 chr1_random 5962105 5962420 -3193699 + MLT1L LTR MaLR 218 561 -54 955 200 73 15 chr1_random 5962420 5962625 -3193494 - MER58A DNA MER1_type 0 224 8 1465 198 131 45 chr1_random 5963661 5964110 -3192009 + MLT1D LTR MaLR 1 488 -17 2513 126 60 25 chr1_random 5964181 5964495 -3191624 + L1MA2 LINE L1 5847 6182 -122 2294 107 0 7 chr1_random 5964495 5964804 -3191315 + AluY SINE Alu 2 308 -3 2513 126 60 25 chr1_random 5964804 5964926 -3191193 + L1MA2 LINE L1 6182 6298 -6 198 71 0 0 chr1_random 5964941 5964969 -3191150 + (A)n Simple_repeat Simple_repeat 1 28 0 379 293 207 4 chr1_random 5965150 5965396 -3190723 + L2 LINE L2 2065 2360 -954 3001 162 134 8 chr1_random 5965514 5966142 -3189977 + MER39 LTR ERV1 1 707 0 644 284 87 83 chr1_random 5966143 5966850 -3189269 + L2 LINE L2 2487 3213 -59 1585 169 63 3 chr1_random 5966910 5967073 -3189046 - AluJo SINE Alu -11 301 112 189 0 0 0 chr1_random 5967073 5967094 -3189025 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 1585 169 63 3 chr1_random 5967094 5967214 -3188905 - AluJo SINE Alu -200 112 1 182 309 147 15 chr1_random 5967511 5967579 -3188540 + L2 LINE L2 3151 3227 -45 657 273 113 81 chr1_random 5967612 5968195 -3187924 + MLT1L LTR MaLR 1 602 -13 667 241 66 52 chr1_random 5968198 5968547 -3187572 - L1MC4 LINE L1 -1 8041 7688 2824 208 73 61 chr1_random 5968558 5969422 -3186697 - L1MC4 LINE L1 -399 7643 6770 233 265 61 22 chr1_random 5969606 5969819 -3186300 - MLT1J2 LTR MaLR -127 323 67 226 335 71 71 chr1_random 5970151 5970613 -3185506 - L2 LINE L2 -339 2975 2514 251 206 63 0 chr1_random 5970950 5971013 -3185106 + MLT1I LTR MaLR 317 383 -26 528 275 79 0 chr1_random 5971068 5971246 -3184873 - MIR SINE MIR -70 192 1 209 255 0 0 chr1_random 5971414 5971465 -3184654 + C-rich Low_complexity Low_complexity 3 53 0 1949 122 17 17 chr1_random 5972157 5972452 -3183667 - AluSx SINE Alu -17 295 1 327 311 96 0 chr1_random 5972516 5972651 -3183468 + L2 LINE L2 2898 3045 -227 385 216 0 26 chr1_random 5972855 5972971 -3183148 + CT-rich Low_complexity Low_complexity 2 114 0 487 230 123 87 chr1_random 5973282 5973591 -3182528 - MLT1H1 LTR MaLR -177 378 59 1837 172 102 42 chr1_random 5973623 5974024 -3182095 + MSTB LTR MaLR 1 425 -1 717 290 128 27 chr1_random 5975025 5975439 -3180680 + L2 LINE L2 2824 3279 -34 483 110 0 0 chr1_random 5975514 5975596 -3180523 - Alu SINE Alu 0 312 231 329 303 96 78 chr1_random 5975874 5976145 -3179974 - L2 LINE L2 -1 3271 2996 354 45 0 0 chr1_random 5976275 5976319 -3179800 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 1584 139 55 47 chr1_random 5976334 5976608 -3179511 - AluSx SINE Alu -36 276 1 419 252 33 60 chr1_random 5976948 5976990 -3179129 - MIR SINE MIR -45 217 175 1528 123 203 0 chr1_random 5976990 5977241 -3178878 - AluSg1 SINE Alu -7 302 1 419 252 33 60 chr1_random 5977241 5977349 -3178770 - MIR SINE MIR -87 175 71 2219 115 3 0 chr1_random 5977594 5977890 -3178229 - AluY SINE Alu -14 297 1 279 0 0 0 chr1_random 5977915 5977946 -3178173 + (TC)n Simple_repeat Simple_repeat 2 32 0 272 337 22 0 chr1_random 5977946 5978038 -3178081 + L2 LINE L2 3220 3313 0 1792 168 11 4 chr1_random 5978119 5978399 -3177720 - AluSx SINE Alu -30 282 1 300 363 0 20 chr1_random 5978500 5978602 -3177517 + L2 LINE L2 3141 3240 -32 768 170 22 0 chr1_random 5978677 5978812 -3177307 + MER20 DNA MER1_type 82 219 0 2154 118 0 7 chr1_random 5979160 5979448 -3176671 + AluSx SINE Alu 1 286 -26 1917 113 90 0 chr1_random 5979592 5979858 -3176261 + AluSx SINE Alu 1 290 -22 1492 211 17 33 chr1_random 5980409 5980567 -3175552 - AluJo SINE Alu -18 294 142 2132 135 3 13 chr1_random 5980567 5980879 -3175240 - AluSg SINE Alu -1 309 1 1492 211 17 33 chr1_random 5980879 5981019 -3175100 - AluJo SINE Alu -170 142 1 2310 102 0 0 chr1_random 5981027 5981322 -3174797 - AluSc SINE Alu -14 295 1 1272 259 113 53 chr1_random 5981377 5981907 -3174212 - MER68 LTR ERV1 0 562 1 2647 251 104 41 chr1_random 5982127 5982446 -3173673 - L1MEc LINE L1 -3922 2474 2176 1571 184 37 0 chr1_random 5982446 5982717 -3173402 - AluJo SINE Alu -31 281 1 2647 251 104 41 chr1_random 5982717 5982728 -3173391 - L1MEc LINE L1 -4220 2176 2167 2308 113 0 6 chr1_random 5982728 5983039 -3173080 - AluSc SINE Alu 0 309 1 2647 251 104 41 chr1_random 5983039 5984302 -3171817 - L1MEc LINE L1 -4229 2167 780 192 138 17 52 chr1_random 5985323 5985337 -3170782 + GA-rich Low_complexity Low_complexity 2 15 -42 2378 90 10 3 chr1_random 5985337 5985647 -3170472 + AluSp SINE Alu 1 312 -1 192 138 17 52 chr1_random 5985647 5985661 -3170458 + GA-rich Low_complexity Low_complexity 15 28 -29 1590 222 0 16 chr1_random 5985661 5985976 -3170143 + AluJb SINE Alu 1 310 -2 192 138 17 52 chr1_random 5985976 5986004 -3170115 + GA-rich Low_complexity Low_complexity 28 57 0 1894 167 0 16 chr1_random 5986421 5986726 -3169393 + AluSx SINE Alu 1 300 -12 195 263 0 0 chr1_random 5986798 5986836 -3169283 + MIR SINE MIR 51 88 -174 24 0 0 0 chr1_random 5987138 5987162 -3168957 + AT_rich Low_complexity Low_complexity 1 24 0 1973 119 12 47 chr1_random 5987261 5987581 -3168538 - AluSc SINE Alu 0 309 1 2903 159 7 4 chr1_random 5992698 5993240 -3162879 + TAR1 Satellite telomeric 1525 2068 -43 396 146 11 54 chr1_random 5993405 5993590 -3162529 + (TTAGGG)n Simple_repeat Simple_repeat 1 177 0 11610 189 35 37 chr1_random 5993604 5994342 -3161777 - L1PBa LINE L1 -927 5935 5197 1145 163 0 0 chr1_random 5994342 5994520 -3161599 - AluSp SINE Alu 0 313 136 11610 189 35 37 chr1_random 5994520 5994604 -3161515 - L1PBa LINE L1 -1665 5197 5114 243 0 0 0 chr1_random 5994604 5994631 -3161488 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 11610 189 35 37 chr1_random 5994631 5995874 -3160245 - L1PBa LINE L1 -1748 5114 3869 225 0 0 0 chr1_random 5995874 5995899 -3160220 + (TTG)n Simple_repeat Simple_repeat 3 27 0 11610 189 35 37 chr1_random 5995899 5998522 -3157597 - L1PBa LINE L1 -2993 3869 989 408 222 0 0 chr1_random 6000313 6000394 -3155725 + LTR16B LTR ERVL 116 196 -268 1834 201 16 38 chr1_random 6000895 6001268 -3154851 + MLT1A1 LTR MaLR 1 365 0 299 299 37 30 chr1_random 6001608 6001742 -3154377 - MIR SINE MIR -108 154 20 294 250 21 31 chr1_random 6001753 6001849 -3154270 + MIR3 SINE MIR 108 202 -6 280 261 0 34 chr1_random 6002485 6002573 -3153546 - L2 LINE L2 0 3272 3188 495 145 48 0 chr1_random 6002617 6002700 -3153419 + AluJ/FRAM SINE Alu 214 300 -12 417 318 64 47 chr1_random 6003078 6003264 -3152855 + MIR SINE MIR 5 194 -62 451 243 89 97 chr1_random 6003465 6003826 -3152293 + MLT1I LTR MaLR 1 390 -148 301 306 48 8 chr1_random 6003797 6003921 -3152198 + MLT1I LTR MaLR 281 409 0 * 420 287 31 0 chr1_random 6003931 6004060 -3152059 - MIR SINE MIR -14 248 116 735 294 22 9 chr1_random 6004383 6004614 -3151505 + MIR SINE MIR 17 250 -12 287 257 26 105 chr1_random 6005109 6005187 -3150932 + MIR SINE MIR 122 184 -78 1915 109 64 7 chr1_random 6005187 6005470 -3150649 + AluSc SINE Alu 1 299 -10 287 257 26 105 chr1_random 6005470 6005543 -3150576 + MIR SINE MIR 184 261 -1 490 309 26 7 chr1_random 6005870 6006022 -3150097 + MIR SINE MIR 37 191 -71 2188 88 10 36 chr1_random 6006022 6006330 -3149789 + AluSq SINE Alu 1 300 -13 471 235 123 18 chr1_random 6007100 6007270 -3148849 + MIR3 SINE MIR 4 191 -17 1783 60 5 0 chr1_random 6007399 6007616 -3148503 + AluSp SINE Alu 91 308 -5 620 138 11 0 chr1_random 6007627 6007714 -3148405 + 5S rRNA rRNA 3 90 -31 1551 190 0 63 chr1_random 6007997 6008329 -3147790 + AluJo SINE Alu 1 311 -1 1638 251 94 35 chr1_random 6008555 6009106 -3147013 - MLT1E LTR MaLR 0 593 10 585 239 58 94 chr1_random 6009113 6009389 -3146730 - MLT1E-int LTR MaLR 0 1371 1106 198 205 0 0 chr1_random 6009456 6009495 -3146624 - L2 LINE L2 0 3313 3275 340 286 92 10 chr1_random 6009921 6010019 -3146100 - MER5B DNA MER1_type -45 133 28 375 328 31 21 chr1_random 6010053 6010245 -3145874 - MER117 DNA MER1_type -3 194 1 189 323 137 25 chr1_random 6010311 6010472 -3145647 + L3 LINE CR1 1043 1221 -356 387 309 138 16 chr1_random 6010546 6010734 -3145385 + MIR SINE MIR 28 238 -24 1789 217 35 44 chr1_random 6011554 6011987 -3144132 + L1MC4 LINE L1 6586 7014 -1028 598 211 158 33 chr1_random 6012159 6012198 -3143921 + L1MC4 LINE L1 7014 7047 -948 1805 153 3 33 chr1_random 6012198 6012505 -3143614 + AluJo SINE Alu 1 298 -14 598 211 158 33 chr1_random 6012505 6013337 -3142782 + L1MC4 LINE L1 7047 7995 0 530 205 43 77 chr1_random 6013351 6013468 -3142651 + MLT1F1 LTR MaLR 13 127 -440 303 262 117 39 chr1_random 6013567 6013670 -3142449 - MIR SINE MIR -118 144 34 464 264 56 80 chr1_random 6013676 6013728 -3142391 + MIR SINE MIR 3 55 -207 852 195 107 39 chr1_random 6013728 6013933 -3142186 - MER20 DNA MER1_type 0 219 1 464 264 56 80 chr1_random 6013933 6014098 -3142021 + MIR SINE MIR 55 214 -48 836 272 25 0 chr1_random 6014323 6014525 -3141594 + MIR SINE MIR 13 219 -43 702 299 76 69 chr1_random 6014577 6015012 -3141107 + L2 LINE L2 2843 3280 -33 311 264 0 75 chr1_random 6015452 6015558 -3140561 - MIR3 SINE MIR -48 160 63 285 87 87 0 chr1_random 6015727 6015773 -3140346 - L2 LINE L2 -2 3311 3262 189 0 0 0 chr1_random 6016939 6016960 -3139159 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr1_random 6019094 6019123 -3136996 + GC_rich Low_complexity Low_complexity 1 29 0 208 249 119 68 chr1_random 6019372 6019531 -3136588 + MIR SINE MIR 6 169 -74 1310 122 11 0 chr1_random 6020621 6020809 -3135310 + AluY SINE Alu 119 308 -3 183 80 0 0 chr1_random 6020844 6020869 -3135250 + (GAAAA)n Simple_repeat Simple_repeat 4 28 0 6208 175 45 41 chr1_random 6021075 6021506 -3134613 + L1MA9 LINE L1 4038 4466 -1846 2206 102 0 23 chr1_random 6021506 6021810 -3134309 + AluSx SINE Alu 1 297 -15 6208 175 45 41 chr1_random 6021810 6023134 -3132985 + L1MA9 LINE L1 4466 5810 -502 882 212 30 30 chr1_random 6023134 6023337 -3132782 + MER6B DNA MER2_type 4 206 -4 6208 175 45 41 chr1_random 6023337 6023804 -3132315 + L1MA9 LINE L1 5810 6274 -38 340 279 78 78 chr1_random 6023840 6023978 -3132141 + L1MC4a LINE L1 5584 5724 -2084 2619 46 0 3 chr1_random 6023978 6024281 -3131838 + AluY SINE Alu 2 303 -8 340 279 78 78 chr1_random 6024281 6024386 -3131733 + L1MC4a LINE L1 5723 5827 -1981 180 0 0 0 chr1_random 6024425 6024445 -3131674 + (CA)n Simple_repeat Simple_repeat 2 21 0 322 328 55 22 chr1_random 6025593 6025776 -3130343 - MIR SINE MIR -2 260 72 2254 92 7 0 chr1_random 6026887 6027181 -3128938 - AluSx SINE Alu -16 296 1 771 303 119 37 chr1_random 6027193 6027680 -3128439 + L2 LINE L2 2579 3127 -186 2330 116 0 0 chr1_random 6027680 6027990 -3128129 - AluSx SINE Alu -2 310 1 771 303 119 37 chr1_random 6027990 6028182 -3127937 + L2 LINE L2 3127 3302 -11 858 181 0 0 chr1_random 6028189 6028322 -3127797 + FLAM_A SINE Alu 1 133 0 1508 196 0 3 chr1_random 6028476 6028762 -3127357 + AluJb SINE Alu 28 312 0 2135 82 0 11 chr1_random 6029712 6029994 -3126125 + AluY SINE Alu 9 287 -24 24 0 0 0 chr1_random 6030365 6030389 -3125730 + AT_rich Low_complexity Low_complexity 1 24 0 2079 96 0 21 chr1_random 6032246 6032526 -3123593 + AluSc SINE Alu 5 278 -31 315 0 0 0 chr1_random 6032535 6032570 -3123549 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 204 269 19 0 chr1_random 6033462 6033514 -3122605 - L2 LINE L2 -7 3265 3213 1000 269 188 36 chr1_random 6034008 6034958 -3121161 + HAL1 LINE L1 1337 2450 -57 2145 132 3 0 chr1_random 6034958 6035261 -3120858 - AluSx SINE Alu -8 304 1 1000 269 188 36 chr1_random 6035261 6035318 -3120801 + HAL1 LINE L1 2450 2497 -10 836 248 41 28 chr1_random 6035419 6035637 -3120482 - MER58A DNA MER1_type 0 224 4 301 363 51 8 chr1_random 6035770 6036007 -3120112 + L2 LINE L2 1805 2051 -1263 694 308 97 33 chr1_random 6036127 6036581 -3119538 + L1MEc LINE L1 42 524 -5872 468 267 48 6 chr1_random 6036732 6036897 -3119222 + Charlie1 DNA MER1_type 54 225 -2536 515 189 31 16 chr1_random 6036899 6037026 -3119093 + Charlie1 DNA MER1_type 2627 2755 -6 664 165 44 82 chr1_random 6039389 6039534 -3116585 + MER33 DNA MER1_type 51 231 -2354 1634 116 8 8 chr1_random 6039534 6039775 -3116344 - AluSq SINE Alu -17 296 56 664 165 44 82 chr1_random 6039775 6039865 -3116254 + MER33 DNA MER1_type 231 323 -1 2201 133 0 0 chr1_random 6040208 6040510 -3115609 + AluSx SINE Alu 1 302 -10 2170 87 25 0 chr1_random 6040594 6040905 -3115214 - AluY SINE Alu 0 318 1 227 310 44 32 chr1_random 6040994 6041152 -3114967 + L1MC/D LINE L1 5742 5901 -1907 375 132 66 26 chr1_random 6041218 6041294 -3114825 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr1_random 6041929 6041950 -3114169 + AT_rich Low_complexity Low_complexity 1 21 0 1876 218 55 48 chr1_random 6042168 6042580 -3113539 + L1M4 LINE L1 3076 3484 -2662 1638 131 45 4 chr1_random 6042580 6042825 -3113294 + AluSx SINE Alu 1 255 -57 2168 109 3 40 chr1_random 6042825 6043147 -3112972 + AluSq SINE Alu 3 312 -1 1876 218 55 48 chr1_random 6043147 6043357 -3112762 + L1M4 LINE L1 3483 3703 -2443 1531 183 70 7 chr1_random 6043359 6043643 -3112476 + AluJo SINE Alu 5 306 -6 811 250 118 30 chr1_random 6043669 6044027 -3112092 + L1ME1 LINE L1 5774 6160 -6 580 212 188 12 chr1_random 6045082 6045247 -3110872 - MIR SINE MIR 0 262 69 826 219 0 0 chr1_random 6045448 6045603 -3110516 - FRAM SINE Alu -21 155 1 2201 104 3 19 chr1_random 6046229 6046546 -3109573 - AluSx SINE Alu 0 312 1 196 332 163 20 chr1_random 6048696 6048997 -3107122 + L2 LINE L2 1179 1522 -1792 867 302 183 28 chr1_random 6049094 6049843 -3106276 + L2 LINE L2 2053 2917 -397 2165 125 0 3 chr1_random 6049917 6050222 -3105897 - AluSx SINE Alu -8 304 1 999 224 35 45 chr1_random 6050671 6050957 -3105162 - MER31B LTR ERV1 -183 283 1 41 21 0 0 chr1_random 6051054 6051102 -3105017 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1_random 6052078 6052100 -3104019 + AT_rich Low_complexity Low_complexity 1 22 0 1111 168 9 39 chr1_random 6052198 6052430 -3103689 + Tigger1 DNA MER2_type 14 238 -2180 632 112 0 0 chr1_random 6052431 6052520 -3103599 + AluY SINE Alu 207 295 -16 21 36 0 0 chr1_random 6054328 6054356 -3101763 + AT_rich Low_complexity Low_complexity 1 28 0 579 307 137 23 chr1_random 6054661 6054967 -3101152 + MER20B DNA MER1_type 92 432 -351 192 77 0 0 chr1_random 6055049 6055075 -3101044 + (CA)n Simple_repeat Simple_repeat 2 27 0 836 298 34 29 chr1_random 6055109 6055519 -3100600 - MER92A LTR ERV1 0 412 1 250 258 72 72 chr1_random 6056778 6056945 -3099174 + MIR3 SINE MIR 30 196 -12 352 272 48 0 chr1_random 6056948 6057059 -3099060 - MIR SINE MIR -63 145 48 1427 83 25 0 chr1_random 6057179 6057383 -3098736 - THE1-int LTR MaLR -1303 277 69 1181 118 65 0 chr1_random 6057383 6057552 -3098567 - AluSx SINE Alu -132 180 1 361 213 111 9 chr1_random 6059093 6059201 -3096918 - L1M4 LINE L1 -1530 4616 4498 1155 233 142 13 chr1_random 6059220 6059670 -3096449 - L1MC4 LINE L1 -1983 5993 5486 783 238 77 58 chr1_random 6059673 6060102 -3096017 - L1MC4 LINE L1 -2665 3415 2979 661 243 75 8 chr1_random 6060145 6060384 -3095735 - L1MC4 LINE L1 -3174 2906 2652 292 301 59 7 chr1_random 6060403 6060539 -3095580 - L1MC4 LINE L1 -5906 164 22 1725 180 11 0 chr1_random 6060581 6060864 -3095255 - AluJb SINE Alu -26 286 1 405 262 43 88 chr1_random 6060896 6061201 -3094918 - L1M4 LINE L1 -2431 3715 3425 1484 188 0 0 chr1_random 6061228 6061468 -3094651 + AluJb SINE Alu 3 242 -70 207 281 0 0 chr1_random 6061507 6061589 -3094530 + CT-rich Low_complexity Low_complexity 1 82 0 22 35 0 0 chr1_random 6061878 6061907 -3094212 + AT_rich Low_complexity Low_complexity 1 29 0 546 331 84 32 chr1_random 6062345 6062692 -3093427 - L2 LINE L2 -499 2815 2451 436 328 42 16 chr1_random 6064003 6064195 -3091924 + HERVL LTR ERVL 2267 2463 -3191 334 197 15 0 chr1_random 6067028 6067094 -3089025 - MIR3 SINE MIR -47 161 95 1321 162 132 0 chr1_random 6067571 6067837 -3088282 + AluJo SINE Alu 2 302 0 1180 140 0 16 chr1_random 6067962 6068155 -3087964 + MER30B DNA MER1_type 1 190 0 709 157 0 0 chr1_random 6068520 6068635 -3087484 + FLAM_C SINE Alu 1 115 -18 693 53 107 4 chr1_random 6069543 6069768 -3086351 + (AAATG)n Simple_repeat Simple_repeat 1 248 0 442 83 83 53 chr1_random 6069795 6069964 -3086155 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 598 60 94 34 chr1_random 6069976 6070211 -3085908 + (AAATG)n Simple_repeat Simple_repeat 1 249 0 719 60 115 28 chr1_random 6070232 6070652 -3085467 + (AAATG)n Simple_repeat Simple_repeat 1 456 0 634 55 124 20 chr1_random 6070665 6070957 -3085162 + (AAATG)n Simple_repeat Simple_repeat 1 322 0 614 56 99 37 chr1_random 6070969 6071130 -3084989 + (AAATG)n Simple_repeat Simple_repeat 3 173 0 478 75 133 0 chr1_random 6071141 6071360 -3084759 + (AAATG)n Simple_repeat Simple_repeat 1 248 0 677 54 95 36 chr1_random 6071403 6071571 -3084548 + (AAATG)n Simple_repeat Simple_repeat 1 178 0 602 65 130 0 chr1_random 6071584 6071738 -3084381 + (AAATG)n Simple_repeat Simple_repeat 5 178 0 544 72 96 48 chr1_random 6071770 6071937 -3084182 + (AAATG)n Simple_repeat Simple_repeat 5 179 0 451 54 127 36 chr1_random 6071977 6072222 -3083897 + (AAATG)n Simple_repeat Simple_repeat 1 267 0 787 71 83 18 chr1_random 6072236 6072405 -3083714 + (AAATG)n Simple_repeat Simple_repeat 1 180 0 701 56 108 31 chr1_random 6072443 6072913 -3083206 + (AAATG)n Simple_repeat Simple_repeat 1 505 0 1548 148 186 19 chr1_random 6073021 6073393 -3082726 + Tigger2a DNA MER2_type 1 434 0 27 29 0 0 chr1_random 6074316 6074350 -3081769 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr1_random 6075526 6075547 -3080572 + AT_rich Low_complexity Low_complexity 1 21 0 2147 120 0 13 chr1_random 6075626 6075942 -3080177 - AluSx SINE Alu 0 312 1 507 293 68 122 chr1_random 6076203 6076955 -3079164 - L1MEd LINE L1 -3303 2826 2116 198 0 0 0 chr1_random 6076991 6077013 -3079106 + (TA)n Simple_repeat Simple_repeat 1 22 0 2135 109 0 13 chr1_random 6077139 6077441 -3078678 + AluSg SINE Alu 1 298 -12 291 312 101 26 chr1_random 6077896 6078264 -3077855 - L1MEd LINE L1 -4867 1252 929 305 304 54 0 chr1_random 6078538 6078630 -3077489 - L1MEd LINE L1 -5493 626 530 231 228 0 70 chr1_random 6080935 6080992 -3075127 - LTR16C LTR ERVL -356 135 83 21 36 0 0 chr1_random 6082550 6082578 -3073541 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1_random 6083495 6083524 -3072595 + AT_rich Low_complexity Low_complexity 1 29 0 222 300 0 25 chr1_random 6083724 6083804 -3072315 + (CATA)n Simple_repeat Simple_repeat 3 80 0 25 31 0 0 chr1_random 6083998 6084030 -3072089 + AT_rich Low_complexity Low_complexity 1 32 0 1521 232 18 0 chr1_random 6084083 6084424 -3071695 + MER7A DNA MER2_type 2 346 0 641 260 131 27 chr1_random 6085057 6085331 -3070788 - MER77 LTR ERV1 -6 599 323 235 214 95 0 chr1_random 6085391 6085475 -3070644 + L1MB7 LINE L1 3064 3155 -2991 4047 264 70 19 chr1_random 6085502 6087294 -3068825 + L1MB7 LINE L1 3565 5445 -735 2362 227 40 7 chr1_random 6087310 6087913 -3068206 + L1MB7 LINE L1 5562 6184 0 432 377 51 7 chr1_random 6087974 6088262 -3067857 - L2 LINE L2 -266 3047 2748 216 260 73 118 chr1_random 6088283 6088529 -3067590 + L3 LINE CR1 760 994 -583 1160 174 22 4 chr1_random 6089855 6090085 -3066034 + L1MB3 LINE L1 5949 6182 -1 584 324 85 45 chr1_random 6090194 6090890 -3065229 + L1MEc LINE L1 546 1222 -4983 740 160 30 0 chr1_random 6090972 6091103 -3065016 - MSTB1 LTR MaLR -297 135 1 239 233 44 11 chr1_random 6092519 6092609 -3063510 - LTR48 LTR ERV1 -48 739 647 1567 172 84 62 chr1_random 6092705 6093087 -3063032 - LTR49 LTR ERV1 -168 427 34 1892 141 7 4 chr1_random 6093087 6093363 -3062756 + AluSq SINE Alu 14 290 -23 1567 172 84 62 chr1_random 6093363 6093398 -3062721 - LTR49 LTR ERV1 -561 34 1 28 48 0 0 chr1_random 6093848 6093890 -3062229 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr1_random 6094094 6094126 -3061993 + AT_rich Low_complexity Low_complexity 1 32 0 554 229 142 11 chr1_random 6094384 6094567 -3061552 + MER20 DNA MER1_type 10 216 -3 1681 181 56 23 chr1_random 6094707 6095138 -3060981 - LTR56 LTR ERV1 0 445 1 2186 192 100 11 chr1_random 6095327 6095868 -3060251 - LTR49 LTR ERV1 -6 589 1 21 0 0 0 chr1_random 6096436 6096457 -3059662 + AT_rich Low_complexity Low_complexity 1 21 0 258 291 17 34 chr1_random 6096646 6096825 -3059294 + (TA)n Simple_repeat Simple_repeat 2 177 0 231 170 21 21 chr1_random 6097196 6097243 -3058876 + L1ME LINE L1 269 315 -5755 563 270 38 16 chr1_random 6097748 6097933 -3058186 - MER54A LTR ERVL -5 896 708 664 205 15 77 chr1_random 6097933 6098128 -3057991 - MER31A-int LTR ERV1 -4553 383 201 * 773 192 61 131 chr1_random 6098095 6098392 -3057727 - MER31A-int LTR ERV1 -4646 290 15 2602 143 56 7 chr1_random 6098439 6098901 -3057218 - MER31A LTR ERV1 0 485 1 2161 98 0 17 chr1_random 6099157 6099453 -3056666 - AluSq SINE Alu -22 291 1 2444 63 3 3 chr1_random 6099825 6100128 -3055991 + AluY SINE Alu 1 303 -8 453 364 57 30 chr1_random 6100619 6100954 -3055165 - HAL1 LINE L1 -836 1671 1328 22 0 0 0 chr1_random 6101108 6101130 -3054989 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr1_random 6101143 6101163 -3054956 + (TC)n Simple_repeat Simple_repeat 1 20 0 6764 66 10 2 chr1_random 6101268 6102524 -3053595 - L1PA6 LINE L1 -4 6150 4890 1308 212 13 0 chr1_random 6102861 6103097 -3053022 - MER8 DNA MER2_type 0 239 1 342 244 0 0 chr1_random 6103132 6103222 -3052897 + L1MC4 LINE L1 6614 6703 -1339 243 0 0 0 chr1_random 6103222 6103249 -3052870 + (TA)n Simple_repeat Simple_repeat 2 28 0 1793 193 5 42 chr1_random 6103254 6103659 -3052460 - MLT1B LTR MaLR 0 390 1 25 75 0 0 chr1_random 6103683 6103736 -3052383 + AT_rich Low_complexity Low_complexity 1 53 0 2086 131 20 0 chr1_random 6104360 6104657 -3051462 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr1_random 6104748 6104770 -3051349 + AT_rich Low_complexity Low_complexity 1 22 0 632 285 50 32 chr1_random 6104951 6105172 -3050947 + MIR SINE MIR 20 244 -18 361 313 112 60 chr1_random 6105322 6105974 -3050145 - L2 LINE L2 -823 2491 1806 27 0 0 0 chr1_random 6105981 6106008 -3050111 + AT_rich Low_complexity Low_complexity 1 27 0 887 118 0 15 chr1_random 6106095 6106230 -3049889 - AluSg/x SINE Alu 0 312 180 183 394 54 25 chr1_random 6106353 6106556 -3049563 - L2 LINE L2 -2916 398 190 2255 94 3 0 chr1_random 6106866 6107154 -3048965 - AluSc SINE Alu -20 289 1 361 310 91 48 chr1_random 6107259 6107498 -3048621 + L1MC4a LINE L1 5348 5575 -2233 2884 121 20 7 chr1_random 6107498 6107954 -3048165 + L1PA16 LINE L1 5704 6165 -1 361 310 91 48 chr1_random 6107954 6108276 -3047843 + L1MC4a LINE L1 5575 5933 -1875 25 65 0 0 chr1_random 6109611 6109657 -3046462 + AT_rich Low_complexity Low_complexity 1 46 0 2210 175 3 3 chr1_random 6110344 6110709 -3045410 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr1_random 6111045 6111068 -3045051 + AT_rich Low_complexity Low_complexity 1 23 0 1451 146 0 13 chr1_random 6111715 6111941 -3044178 - AluJo SINE Alu -4 308 86 2303 125 0 0 chr1_random 6112548 6112860 -3043259 - AluSx SINE Alu 0 312 1 506 271 23 23 chr1_random 6113040 6113217 -3042902 - LTR67 LTR ERVL -25 532 356 294 194 45 0 chr1_random 6113900 6113967 -3042152 - ERVL LTR ERVL -469 5295 5226 723 187 21 18 chr1_random 6114030 6114314 -3041805 - L1MC2 LINE L1 -2 6342 5961 1464 130 24 0 chr1_random 6115077 6115330 -3040789 - L1MC2 LINE L1 -365 5979 5721 1093 137 7 0 chr1_random 6115337 6115576 -3040543 - AluSg/x SINE Alu 0 369 130 869 319 83 52 chr1_random 6115821 6116792 -3039327 - ERVL LTR ERVL -779 4875 3824 2211 148 0 0 chr1_random 6116792 6117103 -3039016 - AluSx SINE Alu -1 311 1 869 319 83 52 chr1_random 6117103 6117359 -3038760 - ERVL LTR ERVL -1830 3824 3577 2050 125 3 13 chr1_random 6117842 6118154 -3037965 + AluSg SINE Alu 1 309 -1 303 82 90 8 chr1_random 6118832 6118954 -3037165 + (TA)n Simple_repeat Simple_repeat 1 132 0 2262 97 3 0 chr1_random 6118954 6119243 -3036876 - AluSp SINE Alu -23 290 1 530 186 0 0 chr1_random 6119492 6119594 -3036525 - AluJb SINE Alu -3 309 208 1401 103 0 5 chr1_random 6120072 6120257 -3035862 - AluSp SINE Alu -12 301 118 232 296 28 0 chr1_random 6120725 6120796 -3035323 - MER5B DNA MER1_type -10 168 96 2294 82 10 3 chr1_random 6120881 6121174 -3034945 + AluSq SINE Alu 1 295 -18 21 0 0 0 chr1_random 6121714 6121735 -3034384 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr1_random 6122055 6122080 -3034039 + AT_rich Low_complexity Low_complexity 1 25 0 446 269 155 19 chr1_random 6122159 6122430 -3033689 + L1ME LINE L1 5409 5716 -405 1015 297 82 51 chr1_random 6122599 6123653 -3032466 + L1MEd LINE L1 2 1088 -5031 712 301 39 20 chr1_random 6123844 6124303 -3031816 + L1M4 LINE L1 3521 3988 -2158 376 173 135 29 chr1_random 6124316 6124420 -3031699 - LTR33A LTR ERVL -24 499 385 36 0 0 0 chr1_random 6124420 6124456 -3031663 + AT_rich Low_complexity Low_complexity 1 36 0 302 309 21 0 chr1_random 6125159 6125256 -3030863 + MER81 DNA DNA 1 99 -15 947 128 11 11 chr1_random 6125835 6126015 -3030104 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 284 26 0 26 chr1_random 6126020 6126058 -3030061 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 991 186 11 0 chr1_random 6126058 6126235 -3029884 - AluJo SINE Alu 0 312 134 509 219 151 8 chr1_random 6126271 6126390 -3029729 + MER5B DNA MER1_type 2 137 -41 2320 116 22 19 chr1_random 6126471 6126834 -3029285 - THE1B LTR MaLR 0 364 1 398 208 118 62 chr1_random 6126962 6127106 -3029013 + MER5B DNA MER1_type 22 173 -5 849 140 0 0 chr1_random 6128221 6128335 -3027784 - AluJo SINE Alu -183 129 16 23 0 0 0 chr1_random 6128418 6128441 -3027678 + AT_rich Low_complexity Low_complexity 1 23 0 746 287 104 47 chr1_random 6128857 6129221 -3026898 + L1ME4a LINE L1 5554 5960 -161 503 135 22 0 chr1_random 6129221 6129310 -3026809 - L1MA6 LINE L1 0 6300 6210 746 287 104 47 chr1_random 6129310 6129482 -3026637 + L1ME4a LINE L1 5960 6121 0 1736 190 32 9 chr1_random 6130293 6130641 -3025478 - MLT1A1 LTR MaLR 0 365 10 377 320 117 18 chr1_random 6130957 6131179 -3024940 - MIR SINE MIR 0 262 19 7746 49 1 0 chr1_random 6131735 6133476 -3022643 + L1PA5 LINE L1 4409 6150 -4 738 170 118 26 chr1_random 6133548 6133701 -3022418 - FAM SINE Alu -8 167 1 8556 133 26 21 chr1_random 6134026 6135513 -3020606 - Tigger2 DNA MER2_type -2 2716 1223 1559 104 0 0 chr1_random 6135519 6135720 -3020399 - AluSq SINE Alu -112 201 1 239 256 85 31 chr1_random 6135724 6135853 -3020266 + L2 LINE L2 2388 2523 -791 1590 187 143 12 chr1_random 6135895 6136123 -3019996 + LOR1a LTR ERV1 1 198 -299 2555 45 0 10 chr1_random 6136123 6136436 -3019683 - AluY SINE Alu -1 310 1 1590 187 143 12 chr1_random 6136436 6136619 -3019500 + LOR1a LTR ERV1 198 466 -31 2058 98 11 0 chr1_random 6137121 6137441 -3018678 + AluSg SINE Alu 1 323 0 215 152 22 0 chr1_random 6137968 6138014 -3018105 + (TA)n Simple_repeat Simple_repeat 2 48 0 423 0 0 0 chr1_random 6138014 6138061 -3018058 + (CA)n Simple_repeat Simple_repeat 2 48 0 650 131 9 0 chr1_random 6138061 6138168 -3017951 - FLAM_C SINE Alu -33 110 3 23 33 0 0 chr1_random 6138171 6138201 -3017918 + AT_rich Low_complexity Low_complexity 1 30 0 547 283 46 5 chr1_random 6138310 6138529 -3017590 + L1MEc LINE L1 1566 1793 -4603 453 196 53 30 chr1_random 6138551 6138748 -3017371 + L1MEc LINE L1 1895 2138 -4258 2172 87 0 21 chr1_random 6138761 6139097 -3017022 + AluSx SINE Alu 2 331 0 673 0 0 0 chr1_random 6140384 6140459 -3015660 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1049 149 0 58 chr1_random 6140926 6141114 -3015005 + AluSg/x SINE Alu 134 310 -2 309 293 14 93 chr1_random 6141127 6141342 -3014777 - L1ME LINE L1 -429 5741 5544 2455 165 6 57 chr1_random 6141348 6141700 -3014419 - MER72 LTR ERV1 -221 501 133 2633 42 0 0 chr1_random 6141700 6142007 -3014112 - AluY SINE Alu -4 307 1 2455 165 6 57 chr1_random 6142007 6142022 -3014097 - MER72 LTR ERV1 -589 133 119 3668 100 44 53 chr1_random 6142022 6142252 -3013867 - MER51D LTR ERV1 -2 655 424 2221 74 0 3 chr1_random 6142252 6142574 -3013545 - AluY SINE Alu 0 321 1 3668 100 44 53 chr1_random 6142574 6142841 -3013278 - MER51D LTR ERV1 -233 424 161 2116 124 0 3 chr1_random 6142841 6143139 -3012980 - AluSx SINE Alu -15 297 1 3668 100 44 53 chr1_random 6143139 6143299 -3012820 - MER51D LTR ERV1 -496 161 1 2455 165 6 57 chr1_random 6143299 6143458 -3012661 - MER72 LTR ERV1 -603 119 1 931 105 21 0 chr1_random 6143473 6143616 -3012503 - LTR49 LTR ERV1 -443 152 7 1066 172 39 5 chr1_random 6143617 6143821 -3012298 + MER89 LTR ERV1 347 557 -2 610 191 85 75 chr1_random 6143839 6144157 -3011962 + MER31B LTR ERV1 1 445 -21 533 196 40 54 chr1_random 6144170 6144318 -3011801 + LTR8 LTR ERV1 1 146 -545 1848 133 39 18 chr1_random 6144321 6144651 -3011468 + MER1B DNA MER1_type 1 337 -2 2646 137 51 46 chr1_random 6144662 6145232 -3010887 + LTR8A LTR ERV1 155 727 0 295 303 91 25 chr1_random 6145248 6145489 -3010630 - HAL1 LINE L1 -1811 696 440 3026 114 35 4 chr1_random 6145522 6146003 -3010116 - MER41E LTR ERV1 0 512 17 180 77 0 0 chr1_random 6146394 6146420 -3009699 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1490 6 0 0 chr1_random 6147143 6147307 -3008812 + U1 snRNA snRNA 1 164 -1 260 182 76 30 chr1_random 6147749 6147815 -3008304 - MER45B DNA AcHobo -660 380 312 254 245 101 22 chr1_random 6147818 6147957 -3008162 + REP3 LTR ERV 4 153 -409 2425 43 40 7 chr1_random 6148304 6148604 -3007515 - AluY SINE Alu 0 311 2 1758 116 16 0 chr1_random 6148757 6148825 -3007294 + AluSx SINE Alu 59 124 -188 234 0 0 0 chr1_random 6148825 6148851 -3007268 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1758 116 16 0 chr1_random 6148851 6149032 -3007087 + AluSx SINE Alu 124 312 0 432 37 0 0 chr1_random 6149224 6149278 -3006841 + (TC)n Simple_repeat Simple_repeat 1 54 0 1314 169 96 63 chr1_random 6150362 6150664 -3005455 + AluJo SINE Alu 1 312 0 630 160 0 0 chr1_random 6150732 6150838 -3005281 + FLAM_A SINE Alu 18 123 -19 551 178 20 0 chr1_random 6150843 6150944 -3005175 + FRAM SINE Alu 40 142 -34 2131 123 0 43 chr1_random 6150966 6151292 -3004827 - AluSx SINE Alu 0 312 1 6295 120 40 10 chr1_random 6151485 6152425 -3003694 + LTR5 LTR ERVK 1 969 0 2264 95 0 0 chr1_random 6152488 6152772 -3003347 - AluSg SINE Alu -26 284 1 2223 75 64 0 chr1_random 6152901 6153183 -3002936 + AluSx SINE Alu 2 301 -11 2333 74 13 0 chr1_random 6153303 6153602 -3002517 + AluSc SINE Alu 2 304 -5 2403 70 0 16 chr1_random 6153938 6154254 -3001865 + AluY SINE Alu 1 311 0 1887 115 93 0 chr1_random 6154612 6154882 -3001237 + AluSx SINE Alu 1 295 -17 355 195 13 13 chr1_random 6154917 6154994 -3001125 - MER4B-int LTR ERV1 -916 5842 5766 833 198 18 0 chr1_random 6155012 6155179 -3000940 + AluJb SINE Alu 140 309 -3 237 85 0 0 chr1_random 6155473 6155520 -3000599 - LTR66 LTR ERVL -169 441 395 255 152 0 0 chr1_random 6155527 6155573 -3000546 + (TA)n Simple_repeat Simple_repeat 2 47 0 1062 149 6 0 chr1_random 6155798 6155972 -3000147 + FRAM SINE Alu 1 174 -2 713 235 33 116 chr1_random 6156185 6156607 -2999512 + LTR56-int LTR ERV1 4644 5030 -93 2465 18 67 0 chr1_random 6156658 6156940 -2999179 + AluY SINE Alu 1 301 -10 468 186 42 34 chr1_random 6156962 6157080 -2999039 + LTR56 LTR ERV1 1 119 -326 266 339 9 0 chr1_random 6157289 6157404 -2998715 + Charlie4 DNA MER1_type 1838 1953 -8 372 341 39 0 chr1_random 6157836 6157965 -2998154 + U1 snRNA snRNA 2 135 -30 1180 182 107 65 chr1_random 6158128 6158515 -2997604 + LTR4 LTR ERV1 212 596 0 255 61 0 0 chr1_random 6158515 6158548 -2997571 + U1 snRNA snRNA 133 165 0 978 185 62 5 chr1_random 6158961 6159031 -2997088 - AluJb SINE Alu -106 206 141 229 26 53 0 chr1_random 6159031 6159069 -2997050 + (TTG)n Simple_repeat Simple_repeat 2 41 0 978 185 62 5 chr1_random 6159069 6159193 -2996926 - AluJb SINE Alu -171 141 1 278 258 119 40 chr1_random 6159335 6159486 -2996633 + REP3 LTR ERV 1 163 -399 258 298 113 7 chr1_random 6159919 6160070 -2996049 + L2 LINE L2 2351 2517 -797 1857 182 68 44 chr1_random 6160124 6160216 -2995903 + LOR1b LTR ERV1 1 89 -372 2646 48 0 7 chr1_random 6160216 6160526 -2995593 + AluY SINE Alu 1 308 -3 1857 182 68 44 chr1_random 6160526 6160861 -2995258 + LOR1b LTR ERV1 89 438 -23 1653 137 0 0 chr1_random 6161675 6161908 -2994211 + AluSx SINE Alu 1 233 -79 247 178 0 0 chr1_random 6162162 6162207 -2993912 + L1MC4 LINE L1 6659 6703 -1339 225 217 0 0 chr1_random 6162167 6162213 -2993906 - L1MC4 LINE L1 -1339 6703 6658 * 268 217 22 43 chr1_random 6162213 6162305 -2993814 - L1MC4 LINE L1 -1339 6703 6614 372 94 0 0 chr1_random 6162310 6162363 -2993756 + (TA)n Simple_repeat Simple_repeat 2 54 0 637 188 0 0 chr1_random 6162372 6162489 -2993630 - FLAM_C SINE Alu -16 117 1 1015 203 134 96 chr1_random 6162590 6163142 -2992977 + L1MEc LINE L1 1566 2138 -4258 253 260 63 9 chr1_random 6163163 6163273 -2992846 + L1MC/D LINE L1 5625 5737 -450 666 86 0 0 chr1_random 6163895 6163988 -2992131 + AluJb SINE Alu 205 297 -15 543 105 0 0 chr1_random 6164584 6164660 -2991459 + tRNA-Asn-AAC tRNA tRNA 1 76 -1 279 0 0 0 chr1_random 6164669 6164700 -2991419 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1921 103 4 7 chr1_random 6164710 6164991 -2991128 - AluSc SINE Alu -29 280 1 749 167 45 8 chr1_random 6165120 6165252 -2990867 - AluJo SINE Alu -169 143 7 1208 195 55 55 chr1_random 6165406 6165698 -2990421 - AluJo SINE Alu -20 292 1 506 146 0 0 chr1_random 6165729 6165811 -2990308 - AluSg1 SINE Alu -2 308 227 942 119 126 0 chr1_random 6165811 6165954 -2990165 - AluSg1 SINE Alu -148 161 1 850 214 0 6 chr1_random 6166094 6166253 -2989866 - FRAM SINE Alu -19 157 1 265 194 45 30 chr1_random 6166292 6166426 -2989693 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 916 130 0 0 chr1_random 6166431 6166554 -2989565 - FLAM_C SINE Alu -20 123 1 1702 186 3 3 chr1_random 6166575 6166866 -2989253 - AluJb SINE Alu -21 291 1 2134 129 0 0 chr1_random 6167992 6168286 -2987833 - AluSx SINE Alu -18 294 1 1521 180 3 51 chr1_random 6168761 6169072 -2987047 + AluJo SINE Alu 1 296 -16 592 215 0 0 chr1_random 6169110 6169231 -2986888 + AluJo SINE Alu 2 122 -180 439 222 30 0 chr1_random 6169242 6169341 -2986778 + AluJo SINE Alu 180 281 -31 2001 124 13 13 chr1_random 6169461 6169768 -2986351 + AluSx SINE Alu 1 307 -5 412 200 0 33 chr1_random 6169771 6169861 -2986258 + LTR56 LTR ERV1 20 106 -339 1479 166 0 47 chr1_random 6169885 6170162 -2985957 - AluSx SINE Alu -14 298 35 1447 211 24 15 chr1_random 6170187 6170549 -2985570 + LTR56 LTR ERV1 97 435 -2 3345 164 42 32 chr1_random 6170625 6170722 -2985397 - LTR51 LTR ERV1 0 671 577 234 0 0 0 chr1_random 6170722 6170748 -2985371 + (GA)n Simple_repeat Simple_repeat 2 27 0 3345 164 42 32 chr1_random 6170748 6171314 -2984805 - LTR51 LTR ERV1 -94 577 1 1974 131 0 3 chr1_random 6172775 6173087 -2983032 + AluSg SINE Alu 1 311 0 1202 176 8 44 chr1_random 6173477 6173727 -2982392 - AluJo SINE Alu -28 284 44 2211 114 10 0 chr1_random 6174056 6174354 -2981765 + AluSx SINE Alu 1 301 -11 271 334 106 39 chr1_random 6174722 6175108 -2981011 + LTR56-int LTR ERV1 2142 2553 -2094 855 232 0 0 chr1_random 6175367 6175518 -2980601 - FRAM SINE Alu -11 155 5 180 111 0 0 chr1_random 6175916 6175943 -2980176 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1762 163 0 0 chr1_random 6176282 6176558 -2979561 + AluJb SINE Alu 21 296 -16 697 214 42 18 chr1_random 6176560 6176728 -2979391 + AluJb SINE Alu 136 307 -5 460 189 126 0 chr1_random 6177006 6177117 -2979002 + LTR56-int LTR ERV1 4776 4900 -223 1947 158 7 0 chr1_random 6177171 6177462 -2978657 - AluJo SINE Alu -19 293 1 1719 160 47 72 chr1_random 6177634 6177963 -2978156 + LTR56 LTR ERV1 12 329 -116 2173 63 39 14 chr1_random 6177963 6178273 -2977846 + AluY SINE Alu 1 311 0 1719 160 47 72 chr1_random 6178273 6178388 -2977731 + LTR56 LTR ERV1 329 445 0 300 217 74 0 chr1_random 6178409 6178539 -2977580 + L1ME2 LINE L1 5745 5891 -273 2798 147 7 80 chr1_random 6178554 6179107 -2977012 + LTR8 LTR ERV1 1 513 -178 475 179 0 0 chr1_random 6179119 6179197 -2976922 + LTR8 LTR ERV1 614 691 0 407 279 29 7 chr1_random 6179742 6179882 -2976237 + Charlie4 DNA MER1_type 1815 1957 -4 583 173 68 49 chr1_random 6180284 6180446 -2975673 + U1 snRNA snRNA 1 165 0 2343 77 0 7 chr1_random 6180731 6181029 -2975090 + AluY SINE Alu 1 296 -15 480 18 0 0 chr1_random 6181611 6181668 -2974451 + (CA)n Simple_repeat Simple_repeat 2 58 0 949 174 0 7 chr1_random 6181668 6181823 -2974296 + AluSg/x SINE Alu 132 285 -27 245 242 16 0 chr1_random 6181962 6182024 -2974095 + MIR SINE MIR 92 154 -108 231 140 260 0 chr1_random 6182592 6182621 -2973498 + L1MB3 LINE L1 5862 5882 -286 213 94 0 0 chr1_random 6182621 6182653 -2973466 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 231 140 260 0 chr1_random 6182653 6182673 -2973446 + L1MB3 LINE L1 5882 5924 -244 271 70 23 0 chr1_random 6182674 6182717 -2973402 - MADE1 DNA Mariner 0 80 37 1149 207 23 12 chr1_random 6182717 6182973 -2973146 + L1MB3 LINE L1 5923 6181 -2 234 339 16 16 chr1_random 6185142 6185269 -2970850 - L2 LINE L2 -219 3053 2927 227 365 19 19 chr1_random 6185898 6186002 -2970117 - L2 LINE L2 -950 2364 2261 286 253 84 48 chr1_random 6186716 6186882 -2969237 - MER104 DNA Tc2 -4 176 5 281 290 93 22 chr1_random 6187503 6187827 -2968292 + L1M4 LINE L1 4217 4563 -1583 1598 260 68 29 chr1_random 6187990 6188685 -2967434 - L1MCa LINE L1 -3080 3346 2625 965 234 132 50 chr1_random 6188740 6189464 -2966655 - L1MCa LINE L1 -4065 2542 1489 220 250 0 54 chr1_random 6189892 6189948 -2966171 + L2 LINE L2 3141 3193 -79 208 268 0 0 chr1_random 6190030 6190071 -2966048 + L2 LINE L2 3140 3180 -92 1987 129 0 0 chr1_random 6190160 6190439 -2965680 - AluSx SINE Alu -10 302 24 2337 109 0 0 chr1_random 6191118 6191421 -2964698 + AluSx SINE Alu 1 303 -9 1258 275 87 21 chr1_random 6192761 6193368 -2962751 + Charlie7 DNA MER1_type 44 690 -1922 471 199 50 21 chr1_random 6193396 6193537 -2962582 + Charlie7 DNA MER1_type 769 913 -1699 2338 106 0 3 chr1_random 6193843 6194155 -2961964 + AluY SINE Alu 1 311 0 2252 108 0 19 chr1_random 6194670 6194985 -2961134 + AluSc SINE Alu 1 309 0 337 319 40 49 chr1_random 6196143 6196369 -2959750 + LTR33 LTR ERVL 10 233 -288 959 255 104 21 chr1_random 6196404 6196741 -2959378 + MLT1A1 LTR MaLR 1 365 0 316 274 73 24 chr1_random 6196959 6197083 -2959036 - MER94 DNA DNA -4 130 1 414 319 61 74 chr1_random 6198009 6198751 -2957368 - HAL1b LINE L1 -540 808 77 2054 187 28 30 chr1_random 6199517 6200076 -2956043 + MLT2A2 LTR ERVL 1 554 0 272 293 0 24 chr1_random 6200076 6200158 -2955961 + (CATG)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr1_random 6200319 6200342 -2955777 + AT_rich Low_complexity Low_complexity 1 23 0 212 200 18 0 chr1_random 6200438 6200493 -2955626 + (TA)n Simple_repeat Simple_repeat 1 56 0 1619 178 170 19 chr1_random 6200498 6200921 -2955198 - MLT2B1 LTR ERVL -20 534 1 386 353 65 7 chr1_random 6201387 6201540 -2954579 - MIR SINE MIR -94 168 7 2785 113 5 0 chr1_random 6202801 6203172 -2952947 - THE1C LTR MaLR -1 374 2 962 226 84 65 chr1_random 6203190 6203557 -2952562 + MLT1B LTR MaLR 1 374 -16 2372 61 0 48 chr1_random 6203661 6203974 -2952145 - AluY SINE Alu -13 298 1 230 339 48 18 chr1_random 6204290 6204455 -2951664 - MIR SINE MIR -73 189 20 259 78 39 0 chr1_random 6204605 6204656 -2951463 + A-rich Low_complexity Low_complexity 2 54 0 186 317 67 29 chr1_random 6205061 6205167 -2950952 - MIR SINE MIR -66 142 35 237 176 0 54 chr1_random 6206140 6206214 -2949905 + (TA)n Simple_repeat Simple_repeat 1 70 0 2893 54 0 0 chr1_random 6206374 6206739 -2949380 + L1PA5 LINE L1 5803 6167 0 497 194 0 0 chr1_random 6206768 6206861 -2949258 + MER31A LTR ERV1 365 457 -28 4624 151 55 25 chr1_random 6206874 6207774 -2948345 + L1PB4 LINE L1 5228 6153 -3 294 276 126 49 chr1_random 6208270 6208479 -2947640 + L1MEc LINE L1 1537 1835 -4547 31 26 0 0 chr1_random 6208802 6208840 -2947279 + AT_rich Low_complexity Low_complexity 1 38 0 207 327 75 0 chr1_random 6209894 6210001 -2946118 - L2 LINE L2 -3 3310 3196 2619 98 13 46 chr1_random 6210142 6210530 -2945589 + THE1C LTR MaLR 1 375 0 769 316 74 27 chr1_random 6211812 6212447 -2943672 + L1ME4a LINE L1 5403 6067 -54 33 25 0 0 chr1_random 6212462 6212502 -2943617 + AT_rich Low_complexity Low_complexity 1 40 0 281 174 72 58 chr1_random 6212933 6213002 -2943117 - MER45B DNA AcHobo -660 380 311 313 299 56 49 chr1_random 6213819 6213963 -2942156 + MIR SINE MIR 53 197 -65 1181 238 80 31 chr1_random 6214162 6214550 -2941569 + L1ME2 LINE L1 5653 6045 -119 855 114 154 0 chr1_random 6214638 6214787 -2941332 + AluSg/x SINE Alu 135 306 -4 1584 6 0 0 chr1_random 6215084 6215248 -2940871 + U1 snRNA snRNA 1 164 -1 294 167 76 30 chr1_random 6215689 6215755 -2940364 - MER45B DNA AcHobo -660 380 312 294 245 101 22 chr1_random 6215758 6215897 -2940222 + REP3 LTR ERV 4 153 -409 2283 44 51 7 chr1_random 6216244 6216538 -2939581 - AluY SINE Alu -3 308 2 1716 124 16 0 chr1_random 6216691 6216759 -2939360 + AluSx SINE Alu 59 124 -188 201 39 0 0 chr1_random 6216759 6216785 -2939334 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1716 124 16 0 chr1_random 6216785 6216966 -2939153 + AluSx SINE Alu 124 312 0 711 189 18 65 chr1_random 6217260 6217429 -2938690 - AluJb SINE Alu -16 296 136 1745 167 0 0 chr1_random 6217431 6217707 -2938412 - AluJb SINE Alu -16 296 21 944 193 0 0 chr1_random 6218161 6218336 -2937783 + FRAM SINE Alu 1 175 0 1356 181 4 0 chr1_random 6219659 6219918 -2936201 + AluJo SINE Alu 44 303 0 2098 117 13 0 chr1_random 6221084 6221383 -2934736 + AluSp SINE Alu 1 303 -10 3624 167 24 38 chr1_random 6221818 6222499 -2933620 + LTR51 LTR ERV1 1 671 0 1760 208 32 31 chr1_random 6222574 6223035 -2933084 - LTR56 LTR ERV1 -1 436 1 665 192 17 15 chr1_random 6223136 6223348 -2932771 - Charlie5 DNA MER1_type 0 2616 2 389 290 12 30 chr1_random 6223362 6223531 -2932588 - L1ME LINE L1 -531 5639 5474 275 253 11 44 chr1_random 6223578 6223669 -2932450 + MER119 DNA MER1_type 172 259 -324 1898 171 0 0 chr1_random 6223675 6223973 -2932146 + AluSx SINE Alu 1 298 -14 28 29 0 0 chr1_random 6224068 6224103 -2932016 + AT_rich Low_complexity Low_complexity 1 35 0 209 219 0 49 chr1_random 6224117 6224199 -2931920 + (TTA)n Simple_repeat Simple_repeat 2 79 0 1631 239 48 11 chr1_random 6224387 6224764 -2931355 - MER87 LTR ERV1 -1 540 150 1990 135 3 0 chr1_random 6224766 6225078 -2931041 - AluSq SINE Alu 0 313 1 745 183 15 7 chr1_random 6225084 6225221 -2930898 - AluJo SINE Alu -174 138 1 198 0 0 0 chr1_random 6226307 6226329 -2929790 + (GA)n Simple_repeat Simple_repeat 1 22 0 1709 173 10 20 chr1_random 6226807 6227113 -2929006 + AluJb SINE Alu 1 303 -9 1504 182 7 45 chr1_random 6227116 6227407 -2928712 + AluJo SINE Alu 1 280 -32 275 0 0 28 chr1_random 6227411 6227447 -2928672 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1481 188 22 0 chr1_random 6227587 6227863 -2928256 + AluJo SINE Alu 8 289 -23 1482 172 20 20 chr1_random 6228035 6228332 -2927787 + AluJb SINE Alu 9 305 -7 557 118 0 0 chr1_random 6228989 6229065 -2927054 - tRNA-Asn-AAC tRNA tRNA -1 76 1 1846 105 4 26 chr1_random 6230131 6230397 -2925722 + L1PA11 LINE L1 5912 6171 -3 351 254 0 0 chr1_random 6231285 6231356 -2924763 + tRNA-Gly-GGG tRNA tRNA 1 71 -3 2297 65 0 3 chr1_random 6232185 6232475 -2923644 + AluSc SINE Alu 1 289 -20 4274 231 101 28 chr1_random 6232774 6234097 -2922022 - L1MCa LINE L1 -2471 3955 2729 2193 117 10 0 chr1_random 6234097 6234404 -2921715 - AluSq SINE Alu -3 310 1 4274 231 101 28 chr1_random 6234404 6235433 -2920686 - L1MCa LINE L1 -3697 2729 1431 1772 191 19 17 chr1_random 6235436 6235798 -2920321 + MLT2D LTR ERVL 4 366 -48 256 24 49 0 chr1_random 6235798 6235839 -2920280 + (TC)n Simple_repeat Simple_repeat 1 43 0 2155 75 55 0 chr1_random 6235952 6236244 -2919875 + AluY SINE Alu 1 308 -3 413 285 25 70 chr1_random 6236493 6236777 -2919342 + L1MC4 LINE L1 7359 7629 -413 300 297 10 10 chr1_random 6236863 6236964 -2919155 - L1MC4 LINE L1 -482 7560 7460 256 329 62 20 chr1_random 6237766 6237912 -2918207 - MIR3 SINE MIR -7 201 50 261 0 0 0 chr1_random 6238455 6238484 -2917635 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2224 116 0 3 chr1_random 6238486 6238780 -2917339 - AluSx SINE Alu -19 293 1 1803 151 7 7 chr1_random 6238977 6239303 -2916816 + AluSx SINE Alu 5 330 0 522 308 6 28 chr1_random 6239616 6239798 -2916321 + MER5B DNA MER1_type 1 178 0 254 322 25 0 chr1_random 6240450 6240568 -2915551 - LTR16A1 LTR ERVL 0 457 337 662 115 0 0 chr1_random 6242257 6242344 -2913775 - AluSq/x SINE Alu -193 120 34 932 121 7 14 chr1_random 6242351 6242491 -2913628 - AluY SINE Alu -172 139 1 1809 166 0 23 chr1_random 6242711 6243018 -2913101 - AluJo SINE Alu -12 300 1 1433 118 0 0 chr1_random 6243083 6243278 -2912841 - AluSp SINE Alu -11 302 108 1020 282 115 42 chr1_random 6243511 6244504 -2911615 - L1MEd LINE L1 -4695 1615 531 792 269 44 74 chr1_random 6245133 6245505 -2910614 + L1MC4a LINE L1 5538 5899 -1909 2695 134 37 37 chr1_random 6245505 6245939 -2910180 - Tigger2a DNA MER2_type 0 434 1 792 269 44 74 chr1_random 6245939 6245956 -2910163 + L1MC4a LINE L1 5899 5915 -1893 1936 154 3 6 chr1_random 6246045 6246356 -2909763 + AluJb SINE Alu 1 310 -2 362 321 0 0 chr1_random 6246606 6246712 -2909407 + MIR3 SINE MIR 98 203 -5 306 262 55 62 chr1_random 6247293 6247438 -2908681 - L1ME4a LINE L1 -4 6117 5974 204 40 0 0 chr1_random 6247440 6247465 -2908654 + (CA)n Simple_repeat Simple_repeat 2 26 0 2414 68 7 19 chr1_random 6247572 6247881 -2908238 - AluY SINE Alu -6 305 1 946 244 30 8 chr1_random 6248069 6248303 -2907816 - MIR SINE MIR -22 240 2 461 272 110 37 chr1_random 6248308 6248499 -2907620 - L1ME4a LINE L1 -2190 5618 5414 258 32 0 0 chr1_random 6248708 6248739 -2907380 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 261 229 43 0 chr1_random 6249870 6249940 -2906179 + MER5A DNA MER1_type 26 98 -91 292 270 101 0 chr1_random 6250208 6250297 -2905822 + MER63A DNA MER1_type 106 203 -7 2105 137 21 33 chr1_random 6250709 6250941 -2905178 - MLT1B LTR MaLR 0 593 360 2276 98 13 70 chr1_random 6250941 6251201 -2904918 - THE1B LTR MaLR 0 364 132 2100 146 3 0 chr1_random 6251201 6251509 -2904610 + AluSx SINE Alu 1 309 -3 2276 98 13 70 chr1_random 6251509 6251634 -2904485 - THE1B LTR MaLR -232 132 1 2105 137 21 33 chr1_random 6251634 6251794 -2904325 - MLT1B LTR MaLR -233 360 1 25 0 0 0 chr1_random 6252617 6252642 -2903477 + AT_rich Low_complexity Low_complexity 1 25 0 1723 184 0 23 chr1_random 6252951 6253260 -2902859 - AluJb SINE Alu -10 302 1 207 385 84 0 chr1_random 6254263 6254346 -2901773 + L2 LINE L2 3151 3240 -32 1962 121 22 61 chr1_random 6254365 6254728 -2901391 + MLT2D LTR ERVL 1 349 -65 207 0 0 0 chr1_random 6254728 6254751 -2901368 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 1915 140 3 52 chr1_random 6258588 6258896 -2897223 - AluJo SINE Alu -19 293 1 14435 78 6 46 chr1_random 6261736 6262796 -2893323 + L1P LINE L1 875 1976 -4170 5272 44 11 5 chr1_random 6262796 6263452 -2892667 - L1PA4 LINE L1 -2 6153 5494 14435 78 6 46 chr1_random 6263452 6264728 -2891391 + L1P LINE L1 1976 3117 -3029 368 292 159 19 chr1_random 6265192 6265375 -2890744 + MIR SINE MIR 4 206 -56 2208 102 3 10 chr1_random 6265408 6265702 -2890417 + AluSx SINE Alu 1 292 -20 1506 201 59 6 chr1_random 6266319 6266643 -2889476 + MER58B DNA MER1_type 1 341 0 1066 254 133 42 chr1_random 6266764 6267272 -2888847 - L2 LINE L2 -1 3312 2757 203 306 136 66 chr1_random 6267417 6268125 -2887994 + L2 LINE L2 1680 2436 -878 308 254 14 0 chr1_random 6268322 6268393 -2887726 - L3 LINE CR1 -54 1523 1452 835 221 179 0 chr1_random 6268463 6268653 -2887466 + MIR SINE MIR 18 241 -21 456 321 86 34 chr1_random 6268718 6268762 -2887357 - L3 LINE CR1 -165 1412 1372 2932 144 39 0 chr1_random 6268762 6269277 -2886842 + L1MB7 LINE L1 5631 6165 -19 456 321 86 34 chr1_random 6269277 6269500 -2886619 - L3 LINE CR1 -205 1372 1131 605 290 100 17 chr1_random 6269580 6269729 -2886390 - MIR SINE MIR -11 251 75 2469 67 0 0 chr1_random 6269729 6270027 -2886092 + AluY SINE Alu 1 298 -13 605 290 100 17 chr1_random 6270027 6270108 -2886011 - MIR SINE MIR -187 75 2 478 269 24 164 chr1_random 6270108 6270564 -2885555 - L3 LINE CR1 -433 1144 754 181 300 170 0 chr1_random 6270574 6270674 -2885445 - MIR3 SINE MIR -3 205 89 189 247 202 11 chr1_random 6270799 6270888 -2885231 - L3 LINE CR1 -1034 543 438 203 245 61 0 chr1_random 6270906 6270955 -2885164 + L2 LINE L2 2688 2739 -575 673 140 15 73 chr1_random 6272275 6272411 -2883708 + FLAM_C SINE Alu 2 129 -4 225 0 0 0 chr1_random 6272984 6273009 -2883110 + (T)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr1_random 6274151 6274178 -2881941 + (CA)n Simple_repeat Simple_repeat 1 27 0 397 343 51 23 chr1_random 6275148 6275364 -2880755 + L2 LINE L2 2838 3059 -213 270 305 0 0 chr1_random 6275435 6275494 -2880625 + L2 LINE L2 3231 3289 -24 343 395 12 6 chr1_random 6276200 6276372 -2879747 + MIR3 SINE MIR 34 206 -2 211 299 37 47 chr1_random 6278125 6278232 -2877887 + L3 LINE CR1 1114 1219 -358 198 281 18 18 chr1_random 6278607 6278664 -2877455 + L2 LINE L2 3244 3300 -13 555 142 4 20 chr1_random 6279917 6280153 -2875966 + AluJb SINE Alu 1 273 -39 190 257 162 14 chr1_random 6280994 6281068 -2875051 + MIR SINE MIR 152 236 -26 2481 63 0 0 chr1_random 6281170 6281473 -2874646 + AluY SINE Alu 1 303 -8 947 189 59 0 chr1_random 6281529 6281751 -2874368 - MER96B DNA MER1_type? -182 235 1 22 56 0 0 chr1_random 6282636 6282672 -2873447 + AT_rich Low_complexity Low_complexity 1 36 0 435 303 113 56 chr1_random 6282866 6283298 -2872821 + L1ME LINE L1 895 1351 -5596 400 302 111 54 chr1_random 6283491 6283781 -2872338 + L1ME LINE L1 1343 1526 -5333 1756 94 0 0 chr1_random 6284964 6285188 -2870931 - AluY SINE Alu -9 302 79 4711 52 0 5 chr1_random 6285476 6286070 -2870049 - L1PA8 LINE L1 -6 6166 5576 2290 121 0 0 chr1_random 6287353 6287660 -2868459 - AluSg SINE Alu -3 307 1 670 241 147 22 chr1_random 6289346 6289578 -2866541 - MIR SINE MIR 0 262 2 279 248 67 38 chr1_random 6289618 6289723 -2866396 - MIR SINE MIR -108 154 47 28 29 0 0 chr1_random 6290022 6290057 -2866062 + AT_rich Low_complexity Low_complexity 1 35 0 255 242 186 40 chr1_random 6290139 6290263 -2865856 + MIR3 SINE MIR 35 176 -32 856 212 41 6 chr1_random 6290625 6290795 -2865324 - MER5A DNA MER1_type -4 185 10 2731 176 111 33 chr1_random 6290900 6291147 -2864972 + L1MA7 LINE L1 5505 5731 -560 2072 93 52 0 chr1_random 6291147 6291436 -2864683 + AluSg SINE Alu 1 304 -6 2731 176 111 33 chr1_random 6291436 6291909 -2864210 + L1MA7 LINE L1 5731 6281 -10 210 118 0 0 chr1_random 6292329 6292363 -2863756 + (A)n Simple_repeat Simple_repeat 1 34 0 891 334 148 12 chr1_random 6292480 6293037 -2863082 - L2 LINE L2 -8 3305 2692 301 302 12 15 chr1_random 6293783 6293875 -2862244 + MIR SINE MIR 4 93 -115 2007 170 82 18 chr1_random 6293884 6294284 -2861835 + MSTB LTR MaLR 1 426 0 299 229 74 74 chr1_random 6294383 6294505 -2861614 - L2 LINE L2 -9 3304 3183 381 385 68 50 chr1_random 6296288 6296610 -2859509 + L2 LINE L2 2923 3250 -22 2246 46 85 7 chr1_random 6297420 6297701 -2858418 - AluY SINE Alu -8 303 1 25 0 0 0 chr1_random 6297791 6297816 -2858303 + AT_rich Low_complexity Low_complexity 1 25 0 1079 0 0 0 chr1_random 6298456 6298579 -2857540 - L1PA4 LINE L1 -1 6154 6032 2007 68 11 15 chr1_random 6298771 6299036 -2857083 + AluY SINE Alu 1 264 -47 243 325 71 24 chr1_random 6501069 6501195 -2654924 - L2 LINE L2 -18 3295 3164 353 284 68 7 chr1_random 6501381 6501428 -2654691 - L2 LINE L2 -423 2891 2848 1577 174 16 41 chr1_random 6501428 6501744 -2654375 + AluJo SINE Alu 1 308 -4 353 284 68 7 chr1_random 6501744 6501844 -2654275 - L2 LINE L2 -466 2848 2735 266 309 94 52 chr1_random 6501841 6502032 -2654087 - MIR SINE MIR -29 233 35 * 198 283 0 0 chr1_random 6503456 6503615 -2652504 + (TG)n Simple_repeat Simple_repeat 1 159 0 388 339 0 0 chr1_random 6503635 6503815 -2652304 + (TG)n Simple_repeat Simple_repeat 1 180 0 269 340 0 0 chr1_random 6503754 6503895 -2652224 + (TGGG)n Simple_repeat Simple_repeat 1 141 0 * 243 353 6 0 chr1_random 6503854 6504024 -2652095 + (TG)n Simple_repeat Simple_repeat 1 171 0 * 303 249 0 0 chr1_random 6504055 6504224 -2651895 + (TG)n Simple_repeat Simple_repeat 1 169 0 743 106 25 27 chr1_random 6504653 6504939 -2651180 + (TG)n Simple_repeat Simple_repeat 1 285 0 309 146 24 12 chr1_random 6505051 6505133 -2650986 + (TG)n Simple_repeat Simple_repeat 2 84 0 375 367 6 17 chr1_random 6506017 6506197 -2649922 + (CACG)n Simple_repeat Simple_repeat 1 178 0 220 288 96 0 chr1_random 6514337 6514410 -2641709 - MIR SINE MIR -73 189 110 921 189 0 5 chr1_random 6516795 6517346 -2638773 + (CAGA)n Simple_repeat Simple_repeat 1 547 0 2354 61 0 3 chr1_random 6520018 6520312 -2635807 - AluY SINE Alu -10 301 9 201 254 0 0 chr1_random 6521550 6521605 -2634514 + (CA)n Simple_repeat Simple_repeat 2 56 0 227 132 0 75 chr1_random 6521639 6521692 -2634427 - L1PA4 LINE L1 -33 6122 6074 209 319 30 44 chr1_random 6521859 6521994 -2634125 + (CATG)n Simple_repeat Simple_repeat 4 136 0 270 256 17 3 chr1_random 6522265 6522336 -2633783 - MIR SINE MIR -58 150 77 870 256 43 0 chr1_random 6523678 6523936 -2632183 + MLT1C LTR MaLR 6 274 -193 627 262 25 0 chr1_random 6524008 6524210 -2631909 + MLT1C LTR MaLR 257 463 -4 242 203 0 0 chr1_random 6525866 6525925 -2630194 + GA-rich Low_complexity Low_complexity 2 60 0 250 286 5 70 chr1_random 6528368 6528553 -2627566 + (CCTG)n Simple_repeat Simple_repeat 1 173 0 * 315 267 0 67 chr1_random 6528441 6528591 -2627528 + (CCCG)n Simple_repeat Simple_repeat 2 141 0 210 37 0 0 chr1_random 6532691 6532718 -2623401 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 195 69 0 0 chr1_random 6532960 6532989 -2623130 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3306 164 17 0 chr1_random 6534002 6534520 -2621599 - MER1A DNA MER1_type 0 527 1 1086 266 51 0 chr1_random 6537491 6537841 -2618278 - MER89 LTR ERV1 0 559 192 1006 220 137 0 chr1_random 6537878 6538192 -2617927 - L1MC1 LINE L1 0 6333 5977 1969 285 52 59 chr1_random 6538258 6538429 -2617690 - L1MC1 LINE L1 -311 6091 5920 2233 100 0 0 chr1_random 6538429 6538729 -2617390 - AluSx SINE Alu -12 300 1 1969 285 52 59 chr1_random 6538729 6539278 -2616841 - L1MC1 LINE L1 -482 5920 5382 718 299 109 14 chr1_random 6539334 6539692 -2616427 + L1ME1 LINE L1 5770 6161 -5 231 133 22 0 chr1_random 6540393 6540438 -2615681 + GA-rich Low_complexity Low_complexity 2 47 0 5149 252 45 44 chr1_random 6540483 6540758 -2615361 - L1MC1 LINE L1 -2020 4195 3922 2029 90 18 4 chr1_random 6540758 6541037 -2615082 - AluSq SINE Alu 0 313 31 5149 252 45 44 chr1_random 6541037 6541459 -2614660 - L1MC1 LINE L1 -2293 3922 3502 1736 171 30 3 chr1_random 6541459 6541763 -2614356 + AluJb SINE Alu 1 312 0 5149 252 45 44 chr1_random 6541763 6543446 -2612673 - L1MC1 LINE L1 -2713 3502 1844 1428 98 0 10 chr1_random 6543454 6543647 -2612472 + AluSg SINE Alu 1 191 -119 227 405 0 0 chr1_random 6544857 6545010 -2611109 + (TG)n Simple_repeat Simple_repeat 2 154 0 376 339 6 22 chr1_random 6545068 6545251 -2610868 + (TG)n Simple_repeat Simple_repeat 1 180 0 477 319 0 11 chr1_random 6545274 6545456 -2610663 + (TG)n Simple_repeat Simple_repeat 1 180 0 221 193 35 0 chr1_random 6552348 6552405 -2603714 + (CACCC)n Simple_repeat Simple_repeat 3 61 0 25 31 0 0 chr1_random 6552891 6552923 -2603196 + GC_rich Low_complexity Low_complexity 1 32 0 2155 99 3 3 chr1_random 6555640 6555933 -2600186 + AluSq SINE Alu 9 301 -12 354 171 0 0 chr1_random 6558443 6558513 -2597606 + GA-rich Low_complexity Low_complexity 1 70 0 244 303 0 0 chr1_random 6564881 6564970 -2591149 + CT-rich Low_complexity Low_complexity 2 90 0 1982 114 47 7 chr1_random 6565079 6565377 -2590742 + AluSx SINE Alu 2 311 -1 405 299 15 0 chr1_random 6565491 6565625 -2590494 + (TG)n Simple_repeat Simple_repeat 2 137 0 345 361 147 17 chr1_random 6565894 6566249 -2589870 - L3 LINE CR1 -138 1439 1039 350 212 52 21 chr1_random 6566821 6567506 -2588613 + (GGGTG)n Simple_repeat Simple_repeat 1 706 0 228 179 54 0 chr1_random 6569873 6569985 -2586134 + (TCTA)n Simple_repeat Simple_repeat 1 118 0 210 71 0 0 chr1_random 6571670 6571698 -2584421 + (TG)n Simple_repeat Simple_repeat 1 28 0 222 233 0 0 chr1_random 6572652 6572738 -2583381 + (TG)n Simple_repeat Simple_repeat 1 86 0 198 194 0 129 chr1_random 6573551 6573613 -2582506 - MIR SINE MIR -92 170 117 281 333 0 0 chr1_random 6575375 6575459 -2580660 + G-rich Low_complexity Low_complexity 6 89 0 203 237 0 0 chr1_random 6576238 6576276 -2579843 + polypyrimidine Low_complexity Low_complexity 4 41 0 447 253 26 22 chr1_random 6580235 6580372 -2575747 - MIR SINE MIR -62 146 61 1015 144 12 0 chr1_random 6580555 6580980 -2575139 + (TGGA)n Simple_repeat Simple_repeat 1 430 0 211 342 123 66 chr1_random 6581079 6581322 -2574797 + L2 LINE L2 3016 3272 0 243 316 126 11 chr1_random 6581577 6581672 -2574447 + L2 LINE L2 3162 3267 -5 2038 109 0 20 chr1_random 6584479 6584781 -2571338 - AluSq SINE Alu -17 296 1 27 0 0 0 chr1_random 6584977 6585004 -2571115 + AT_rich Low_complexity Low_complexity 1 27 0 624 188 0 0 chr1_random 6585737 6585865 -2570254 + (TG)n Simple_repeat Simple_repeat 1 128 0 187 231 58 19 chr1_random 6586442 6586494 -2569625 + L2 LINE L2 3208 3261 -11 205 125 25 25 chr1_random 6587929 6587969 -2568150 + CT-rich Low_complexity Low_complexity 3 42 0 182 339 0 16 chr1_random 6588117 6588179 -2567940 - L2 LINE L2 -2049 1265 1205 1182 147 0 0 chr1_random 6592511 6592702 -2563417 + AluJb SINE Alu 87 277 -35 682 295 43 0 chr1_random 6593838 6594048 -2562071 - MER20 DNA MER1_type 0 219 1 441 318 52 19 chr1_random 6594968 6595179 -2560940 + MIR SINE MIR 28 245 -17 2280 96 3 0 chr1_random 6597285 6597586 -2558533 - AluSx SINE Alu -10 302 1 689 196 18 0 chr1_random 6599968 6600187 -2555932 + GA-rich Low_complexity Low_complexity 1 223 0 238 182 30 0 chr1_random 6600201 6600267 -2555852 + GA-rich Low_complexity Low_complexity 1 68 0 1823 145 45 0 chr1_random 6601569 6601858 -2554261 - AluJo SINE Alu -10 302 1 22 0 0 0 chr1_random 6605747 6605769 -2550350 + AT_rich Low_complexity Low_complexity 1 22 0 398 364 16 27 chr1_random 6606280 6606464 -2549655 + MIR SINE MIR 11 192 -70 833 333 47 21 chr1_random 6606549 6607063 -2549056 + L1ME LINE L1 140 666 -5539 1002 267 52 64 chr1_random 6607095 6607592 -2548527 + L1ME LINE L1 587 1088 -5117 1263 220 90 4 chr1_random 6607592 6607860 -2548259 - AluJo SINE Alu -21 291 1 1002 267 52 64 chr1_random 6607860 6607974 -2548145 + L1ME LINE L1 1088 1110 -5095 2251 91 0 25 chr1_random 6607974 6608293 -2547826 + AluY SINE Alu 1 311 0 1002 267 52 64 chr1_random 6608293 6608407 -2547712 + L1ME LINE L1 1110 1224 -4981 2145 256 67 24 chr1_random 6608440 6609385 -2546734 + L1ME2 LINE L1 5153 6141 -23 245 216 20 0 chr1_random 6609406 6609457 -2546662 + MIR SINE MIR 28 79 -183 1738 252 37 15 chr1_random 6609924 6610333 -2545786 - MER47B DNA MER2_type 0 418 1 207 349 8 87 chr1_random 6612393 6612519 -2543600 + L2 LINE L2 3001 3116 -156 189 306 0 0 chr1_random 6613819 6613930 -2542189 + (TG)n Simple_repeat Simple_repeat 2 112 0 328 330 0 0 chr1_random 6613944 6614050 -2542069 + (TG)n Simple_repeat Simple_repeat 1 106 0 442 358 0 0 chr1_random 6614645 6615055 -2541064 + (CA)n Simple_repeat Simple_repeat 1 410 0 353 355 0 0 chr1_random 6615084 6615236 -2540883 + (CA)n Simple_repeat Simple_repeat 1 152 0 417 330 0 11 chr1_random 6615250 6615432 -2540687 + (CA)n Simple_repeat Simple_repeat 1 180 0 251 265 0 0 chr1_random 6615446 6615514 -2540605 + (CA)n Simple_repeat Simple_repeat 1 68 0 523 324 6 0 chr1_random 6615540 6615716 -2540403 + (CA)n Simple_repeat Simple_repeat 1 177 0 360 0 0 0 chr1_random 6616272 6616312 -2539807 + (TG)n Simple_repeat Simple_repeat 2 41 0 231 307 67 0 chr1_random 6617035 6617110 -2539009 + MIR SINE MIR 117 196 -66 186 368 13 0 chr1_random 6617759 6617835 -2538284 - MIR SINE MIR -114 148 72 2154 170 70 5 chr1_random 6617866 6618266 -2537853 - MSTB LTR MaLR 0 426 1 1326 230 65 79 chr1_random 6618790 6619359 -2536760 + L1MB5 LINE L1 5614 6174 0 184 328 17 0 chr1_random 6620451 6620509 -2535610 - L2 LINE L2 0 3313 3255 497 236 32 0 chr1_random 6623549 6623672 -2532447 + MER20 DNA MER1_type 90 216 -3 571 234 155 17 chr1_random 6625473 6625712 -2530407 + MLT1C LTR MaLR 9 280 -187 822 192 39 5 chr1_random 6626166 6626369 -2529750 + MLT1C LTR MaLR 258 467 0 255 204 0 29 chr1_random 6629673 6629776 -2526343 + (CA)n Simple_repeat Simple_repeat 1 100 0 182 230 0 11 chr1_random 6629853 6629940 -2526179 + (CA)n Simple_repeat Simple_repeat 1 86 0 395 243 0 7 chr1_random 6630013 6630161 -2525958 + (CA)n Simple_repeat Simple_repeat 2 148 0 230 203 0 14 chr1_random 6630186 6630255 -2525864 + (CA)n Simple_repeat Simple_repeat 1 68 0 212 143 24 0 chr1_random 6630757 6630799 -2525320 + GA-rich Low_complexity Low_complexity 2 44 0 297 321 38 8 chr1_random 6633667 6633798 -2522321 + MIR3 SINE MIR 36 170 -38 475 219 0 13 chr1_random 6634353 6634508 -2521611 + (CA)n Simple_repeat Simple_repeat 1 153 0 279 214 0 0 chr1_random 6634542 6634612 -2521507 + (CA)n Simple_repeat Simple_repeat 1 70 0 191 376 21 11 chr1_random 6635118 6635211 -2520908 - MIR SINE MIR -60 202 109 1742 110 0 8 chr1_random 6685326 6685572 -2470547 + AluSg SINE Alu 63 306 -4 1679 291 50 29 chr1_random 6685586 6686096 -2470023 - L1MEc LINE L1 -4566 2556 2019 2031 139 0 3 chr1_random 6686096 6686405 -2469714 - AluJb SINE Alu -4 308 1 1679 291 50 29 chr1_random 6686405 6686747 -2469372 - L1MEc LINE L1 -5103 2019 1686 440 165 11 0 chr1_random 6686751 6686842 -2469277 + (TG)n Simple_repeat Simple_repeat 2 93 0 1064 192 96 15 chr1_random 6686859 6687120 -2468999 - AluJb SINE Alu -30 282 1 618 219 5 53 chr1_random 6687120 6687324 -2468795 - L1MEc LINE L1 -4953 1657 1307 338 364 11 26 chr1_random 6687476 6687748 -2468371 - L1MEc LINE L1 -5578 818 551 642 169 48 16 chr1_random 6687903 6688027 -2468092 - AluJb SINE Alu -20 292 165 784 285 81 3 chr1_random 6689999 6690322 -2465797 - MLT1A1 LTR MaLR -17 348 1 239 267 105 48 chr1_random 6692122 6692227 -2463892 - MIR SINE MIR -62 146 36 180 176 0 0 chr1_random 6698829 6698863 -2457256 + (CA)n Simple_repeat Simple_repeat 1 34 0 286 210 0 0 chr1_random 6705306 6705368 -2450751 - MER20 DNA MER1_type -141 78 17 323 301 157 44 chr1_random 6706904 6707425 -2448694 + HAL1 LINE L1 821 1400 -1107 418 340 127 32 chr1_random 6707448 6707827 -2448292 + HAL1 LINE L1 1356 1770 -737 319 260 89 68 chr1_random 6708191 6708337 -2447782 + HAL1 LINE L1 2359 2507 0 413 269 69 28 chr1_random 6709599 6709744 -2446375 - MIR SINE MIR -35 227 77 196 259 0 0 chr1_random 6712020 6712075 -2444044 - MIR SINE MIR -63 145 91 236 276 17 0 chr1_random 6712858 6712916 -2443203 + MIR SINE MIR 80 138 -124 185 346 148 0 chr1_random 6713328 6713429 -2442690 - L2 LINE L2 -1 3312 3197 411 211 0 0 chr1_random 6717463 6717634 -2438485 + (CA)n Simple_repeat Simple_repeat 1 171 0 455 263 12 12 chr1_random 6717671 6717926 -2438193 + (CA)n Simple_repeat Simple_repeat 1 255 0 270 274 0 0 chr1_random 6718066 6718245 -2437874 + (CA)n Simple_repeat Simple_repeat 1 179 0 245 213 16 16 chr1_random 6718256 6718317 -2437802 + LTR33 LTR ERVL 106 166 -355 757 172 10 103 chr1_random 6718676 6718880 -2437239 + MER5A DNA MER1_type 1 185 -4 606 296 60 0 chr1_random 6718883 6719082 -2437037 + MIR SINE MIR 9 219 -43 191 347 56 0 chr1_random 6719472 6719544 -2436575 + MIR SINE MIR 80 155 -107 399 258 66 20 chr1_random 6724253 6724404 -2431715 - L3 LINE CR1 -13 1564 1407 231 191 32 16 chr1_random 6724951 6725014 -2431105 - MER117 DNA MER1_type -37 160 97 345 398 12 0 chr1_random 6725147 6725308 -2430811 + L2 LINE L2 3150 3312 -1 200 301 53 26 chr1_random 6725735 6725848 -2430271 + MIR3 SINE MIR 12 127 -81 2564 111 5 22 chr1_random 6729347 6729716 -2426403 + THE1B LTR MaLR 1 363 -1 1415 148 0 183 chr1_random 6730063 6730471 -2425648 - AluJo SINE Alu 0 302 3 1736 155 16 13 chr1_random 6730473 6730783 -2425336 - AluJo SINE Alu -1 311 1 2280 88 0 0 chr1_random 6730915 6731209 -2424910 + AluY SINE Alu 7 300 -11 429 215 54 27 chr1_random 6735038 6735197 -2420922 + MLT1C LTR MaLR 1 168 -197 212 326 23 0 chr1_random 6736751 6736837 -2419282 - MIR SINE MIR -60 148 61 2245 84 7 3 chr1_random 6739642 6739939 -2416180 - AluSx SINE Alu -14 298 1 2119 162 70 62 chr1_random 6741685 6742186 -2413933 + MLT1D LTR MaLR 1 505 0 236 241 9 0 chr1_random 6743876 6743992 -2412127 + (CAGGA)n Simple_repeat Simple_repeat 3 119 0 1093 241 164 41 chr1_random 6744370 6744785 -2411334 + MLT1C LTR MaLR 1 466 -1 381 291 150 22 chr1_random 6744819 6745139 -2410980 + L2 LINE L2 2911 3271 -42 431 236 57 8 chr1_random 6745259 6745382 -2410737 - MER103 DNA DNA 0 166 38 462 272 55 11 chr1_random 6748756 6748949 -2407170 + MLT1C LTR MaLR 281 467 0 221 239 248 18 chr1_random 6750814 6750923 -2405196 - MIR3 SINE MIR -74 134 1 184 311 27 0 chr1_random 6751057 6751131 -2404988 + MIR SINE MIR 70 145 -117 404 328 162 10 chr1_random 6752041 6752245 -2403874 - MIR SINE MIR -17 245 11 31 0 0 0 chr1_random 6752282 6752313 -2403806 + AT_rich Low_complexity Low_complexity 1 31 0 285 270 44 29 chr1_random 6752362 6752499 -2403620 + L1MEc LINE L1 45 183 -6213 350 266 53 0 chr1_random 6753471 6753565 -2402554 - MIR SINE MIR -78 184 86 593 224 14 73 chr1_random 6754822 6755041 -2401078 + Charlie5 DNA MER1_type 2376 2581 -31 282 245 115 79 chr1_random 6755041 6755180 -2400939 + MIR SINE MIR 60 203 -59 249 267 26 43 chr1_random 6755614 6755730 -2400389 + MIR3 SINE MIR 63 176 -32 256 190 51 0 chr1_random 6759798 6759877 -2396242 + (TG)n Simple_repeat Simple_repeat 1 83 0 491 327 4 0 chr1_random 6759925 6760217 -2395902 + (TG)n Simple_repeat Simple_repeat 1 293 0 427 312 0 0 chr1_random 6760245 6760415 -2395704 + (TG)n Simple_repeat Simple_repeat 1 170 0 222 271 0 0 chr1_random 6760483 6760590 -2395529 + (TG)n Simple_repeat Simple_repeat 1 107 0 376 335 0 49 chr1_random 6762705 6762978 -2393141 + (CACG)n Simple_repeat Simple_repeat 1 259 0 221 296 0 0 chr1_random 6763612 6763666 -2392453 - MIR3 SINE MIR -43 165 112 221 296 0 0 chr1_random 6763672 6763726 -2392393 - MIR3 SINE MIR -43 165 112 221 296 0 0 chr1_random 6763732 6763786 -2392333 - MIR3 SINE MIR -43 165 112 237 278 0 0 chr1_random 6763792 6763846 -2392273 - MIR3 SINE MIR -43 165 112 221 296 0 0 chr1_random 6763852 6763906 -2392213 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6763912 6763966 -2392153 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6763972 6764026 -2392093 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6764032 6764086 -2392033 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6764092 6764146 -2391973 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6764152 6764206 -2391913 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6764212 6764266 -2391853 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6764272 6764326 -2391793 - MIR3 SINE MIR -43 165 112 210 315 0 0 chr1_random 6764332 6764386 -2391733 - MIR3 SINE MIR -43 165 112 213 296 112 51 chr1_random 6764392 6764490 -2391629 - MIR3 SINE MIR -43 165 62 272 226 45 45 chr1_random 6765883 6766016 -2390103 + C-rich Low_complexity Low_complexity 5 137 0 507 331 80 32 chr1_random 6766029 6766438 -2389681 - L1MEd LINE L1 -2671 3458 832 228 238 84 46 chr1_random 6769521 6769639 -2386480 + MIR SINE MIR 12 139 -69 184 216 0 0 chr1_random 6770293 6770330 -2385789 - MIR SINE MIR -61 147 111 224 306 0 12 chr1_random 6771443 6771528 -2384591 + (CTCGG)n Simple_repeat Simple_repeat 5 88 0 329 350 30 86 chr1_random 6771748 6772051 -2384068 - L1 LINE L1 -1710 4436 4151 373 337 105 6 chr1_random 6772419 6772772 -2383347 - L1 LINE L1 -2161 3985 3598 2502 55 0 3 chr1_random 6772772 6773079 -2383040 + AluY SINE Alu 1 306 -5 384 332 172 8 chr1_random 6773223 6773473 -2382646 - L1 LINE L1 -2687 3459 3169 1893 137 24 21 chr1_random 6773519 6773557 -2382562 + L1PB4 LINE L1 5400 5436 -720 1807 163 7 13 chr1_random 6773557 6773858 -2382261 + AluJb SINE Alu 1 299 -13 1893 137 24 21 chr1_random 6773858 6774192 -2381927 + L1PB4 LINE L1 5436 5773 -383 398 19 0 19 chr1_random 6774233 6774285 -2381834 + (TA)n Simple_repeat Simple_repeat 1 51 0 2051 160 34 0 chr1_random 6774323 6774673 -2381446 + L1PB4 LINE L1 5785 6146 -10 250 268 6 60 chr1_random 6776149 6776317 -2379802 + (GGGTG)n Simple_repeat Simple_repeat 3 161 0 232 229 17 86 chr1_random 6776428 6776603 -2379516 + (GGGTG)n Simple_repeat Simple_repeat 4 166 0 358 339 18 18 chr1_random 6779931 6780099 -2376020 + L1MB5 LINE L1 5596 5763 -415 514 273 46 0 chr1_random 6780116 6780350 -2375769 + L1MB5 LINE L1 5842 6174 0 1795 139 10 14 chr1_random 6782220 6782514 -2373605 + AluJo SINE Alu 7 299 -13 387 251 34 0 chr1_random 6784315 6784421 -2371698 - MLT1D LTR MaLR -8 459 368 578 262 51 17 chr1_random 6784465 6784702 -2371417 - MLT1D LTR MaLR -260 245 1 207 0 0 0 chr1_random 6784956 6784979 -2371140 + (CCCA)n Simple_repeat Simple_repeat 2 24 0 907 270 23 58 chr1_random 6786717 6787113 -2369006 + MLT1D LTR MaLR 116 497 -8 576 117 0 0 chr1_random 6788155 6788232 -2367887 + AluJo SINE Alu 6 82 -230 1207 185 28 33 chr1_random 6788322 6788626 -2367493 + LTR10B LTR ERV1 303 547 0 1287 162 13 9 chr1_random 6788627 6788855 -2367264 + AluJo SINE Alu 84 312 0 986 189 6 0 chr1_random 6789172 6789347 -2366772 + FRAM SINE Alu 1 175 -1 2217 94 3 3 chr1_random 6789523 6789830 -2366289 + AluSg SINE Alu 1 307 -3 1284 252 80 0 chr1_random 6789943 6790316 -2365803 - L1MC2 LINE L1 -9 6335 5933 291 245 21 11 chr1_random 6791895 6791989 -2364130 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 192 405 12 0 chr1_random 6794116 6794200 -2361919 - MIR SINE MIR -70 192 108 1996 124 0 0 chr1_random 6802039 6802349 -2353770 - AluSx SINE Alu 0 310 1 2449 85 38 44 chr1_random 6802902 6803267 -2352852 - THE1B LTR MaLR -1 363 1 215 291 63 0 chr1_random 6803388 6803467 -2352652 - MIR3 SINE MIR -43 165 82 257 272 29 17 chr1_random 6804262 6804435 -2351684 + (CAGCC)n Simple_repeat Simple_repeat 3 177 0 202 344 71 26 chr1_random 6804792 6804946 -2351173 + MIR3 SINE MIR 2 162 -46 232 307 0 0 chr1_random 6807709 6807784 -2348335 + G-rich Low_complexity Low_complexity 1 75 0 191 302 47 23 chr1_random 6808558 6808644 -2347475 - MIR SINE MIR -74 134 47 604 317 102 10 chr1_random 6809822 6810216 -2345903 + L2 LINE L2 2432 2861 -453 213 358 86 41 chr1_random 6810270 6810513 -2345606 + L2 LINE L2 3019 3272 0 225 141 85 68 chr1_random 6811377 6811554 -2344565 + (CAGC)n Simple_repeat Simple_repeat 1 180 0 313 262 0 49 chr1_random 6812895 6813078 -2343041 + (TG)n Simple_repeat Simple_repeat 1 174 0 233 269 0 47 chr1_random 6813144 6813293 -2342826 + (TG)n Simple_repeat Simple_repeat 1 142 0 331 232 0 60 chr1_random 6813374 6813525 -2342594 + (TG)n Simple_repeat Simple_repeat 1 142 0 387 271 0 39 chr1_random 6813682 6813863 -2342256 + (TG)n Simple_repeat Simple_repeat 1 174 0 217 278 0 43 chr1_random 6813896 6814011 -2342108 + (TG)n Simple_repeat Simple_repeat 1 110 0 337 299 75 0 chr1_random 6815807 6815941 -2340178 - MIR SINE MIR -117 145 2 192 303 143 17 chr1_random 6816283 6816402 -2339717 + L2 LINE L2 3139 3272 0 345 305 84 24 chr1_random 6816564 6816731 -2339388 - MER69A DNA AcHobo 0 177 1 213 236 0 36 chr1_random 6819458 6819513 -2336606 + G-rich Low_complexity Low_complexity 3 55 0 2042 158 0 0 chr1_random 6820468 6820778 -2335341 + AluJo SINE Alu 1 310 -2 296 247 18 47 chr1_random 6822802 6822972 -2333147 + C-rich Low_complexity Low_complexity 3 167 0 1047 229 66 29 chr1_random 6823772 6824152 -2331967 + MLT1C LTR MaLR 68 461 -6 228 164 36 18 chr1_random 6824252 6824307 -2331812 + (CAGAGA)n Simple_repeat Simple_repeat 5 60 0 22 0 0 0 chr1_random 6824586 6824608 -2331511 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr1_random 6824992 6825014 -2331105 + GC_rich Low_complexity Low_complexity 1 22 0 383 263 163 21 chr1_random 6827771 6827961 -2328158 - MER20 DNA MER1_type 0 219 3 1149 177 95 7 chr1_random 6829539 6829822 -2326297 + THE1C LTR MaLR 68 375 0 2805 122 122 73 chr1_random 6829822 6830448 -2325671 + THE1C-int LTR MaLR 1 656 -924 1071 141 10 15 chr1_random 6830492 6830690 -2325429 + THE1C-int LTR MaLR 823 1019 -561 6263 76 16 3 chr1_random 6830690 6831575 -2324544 - LTR13 LTR ERVK 0 1007 112 454 249 93 43 chr1_random 7031576 7031973 -2124146 - HAL1 LINE L1 -1214 1293 877 271 312 24 8 chr1_random 7032012 7032137 -2123982 - HAL1 LINE L1 -1745 762 636 245 286 12 36 chr1_random 7033653 7033737 -2122382 + CT-rich Low_complexity Low_complexity 6 87 0 1793 132 29 0 chr1_random 7033867 7034185 -2121934 - AluSx SINE Alu 0 326 1 254 336 16 24 chr1_random 7034737 7034862 -2121257 - MIR3 SINE MIR -37 171 48 229 299 75 27 chr1_random 7035892 7036039 -2120080 - MLT1K LTR MaLR -15 573 420 232 197 0 30 chr1_random 7036045 7036111 -2120008 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 215 320 10 10 chr1_random 7036180 7036277 -2119842 + C-rich Low_complexity Low_complexity 2 98 0 * 293 268 21 10 chr1_random 7036205 7036302 -2119817 + (TCCA)n Simple_repeat Simple_repeat 2 99 0 302 318 64 12 chr1_random 7036694 7036867 -2119252 - LTR41 LTR ERVL -591 182 1 494 141 0 0 chr1_random 7037023 7037094 -2119025 - AluS SINE Alu -19 293 223 284 191 87 87 chr1_random 7037105 7037156 -2118963 + MLT1I LTR MaLR 283 333 -76 2035 121 0 43 chr1_random 7037156 7037479 -2118640 + AluY SINE Alu 1 309 -2 284 191 87 87 chr1_random 7037479 7037553 -2118566 + MLT1I LTR MaLR 332 408 -1 466 275 69 12 chr1_random 7037554 7037714 -2118405 - MIR SINE MIR -67 195 27 801 86 19 0 chr1_random 7037748 7037854 -2118265 - BSR/Beta Satellite Satellite 0 107 1 2451 156 13 5 chr1_random 7038133 7038524 -2117595 - MSTD LTR MaLR -2 394 1 626 203 5 26 chr1_random 7038801 7039171 -2116948 + CT-rich Low_complexity Low_complexity 1 362 0 388 251 17 62 chr1_random 7039216 7039395 -2116724 + L1M4 LINE L1 3422 3592 -2554 725 336 22 47 chr1_random 7039613 7040062 -2116057 - L1MC4a LINE L1 -1880 5928 5491 5405 246 31 34 chr1_random 7040297 7042127 -2113992 + L1P3 LINE L1 10 1812 -4639 10281 124 30 20 chr1_random 7042136 7044237 -2111882 + L1PA7 LINE L1 3779 5889 -265 1941 108 64 3 chr1_random 7044237 7044532 -2111587 + AluSp SINE Alu 1 313 0 10281 124 30 20 chr1_random 7044532 7044796 -2111323 + L1PA7 LINE L1 5889 6149 -5 4867 244 61 28 chr1_random 7046049 7048063 -2108056 + L1 LINE L1 2864 4942 -1204 201 147 0 0 chr1_random 7048066 7048100 -2108019 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 727 224 12 0 chr1_random 7048233 7048403 -2107716 + L1MB4 LINE L1 6007 6178 -2 191 376 118 12 chr1_random 7049972 7050142 -2105977 - MIR SINE MIR -24 238 51 256 329 0 0 chr1_random 7051609 7051688 -2104431 - L2 LINE L2 0 3272 3194 2174 108 10 0 chr1_random 7051855 7052161 -2103958 + AluSx SINE Alu 1 309 -3 1361 93 0 0 chr1_random 7052161 7052343 -2103776 + AluSg/x SINE Alu 126 307 -5 349 320 186 8 chr1_random 7052356 7052636 -2103483 - L2 LINE L2 -273 3040 2718 248 378 139 7 chr1_random 7052719 7052870 -2103249 - L2 LINE L2 -781 2533 2363 244 43 21 43 chr1_random 7055528 7055575 -2100544 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1361 171 47 18 chr1_random 7055583 7055857 -2100262 - AluJo SINE Alu -30 282 1 516 318 0 30 chr1_random 7059621 7060000 -2096119 + (TG)n Simple_repeat Simple_repeat 1 367 0 419 343 0 4 chr1_random 7060024 7060333 -2095786 + (TG)n Simple_repeat Simple_repeat 1 307 0 300 272 58 0 chr1_random 7062665 7062768 -2093351 + (CATG)n Simple_repeat Simple_repeat 4 112 0 351 274 17 0 chr1_random 7062769 7062944 -2093175 + (CA)n Simple_repeat Simple_repeat 1 178 0 218 219 0 0 chr1_random 7062949 7062990 -2093129 + (CATA)n Simple_repeat Simple_repeat 4 44 0 449 270 0 6 chr1_random 7062992 7063170 -2092949 + (CA)n Simple_repeat Simple_repeat 1 177 0 249 232 0 0 chr1_random 7063195 7063264 -2092855 + (CA)n Simple_repeat Simple_repeat 1 69 0 429 243 7 86 chr1_random 7063442 7063582 -2092537 + MER63 DNA MER1_type 1 755 -307 516 321 117 14 chr1_random 7063701 7064059 -2092060 + L2 LINE L2 2877 3271 -42 1988 126 7 7 chr1_random 7067167 7067461 -2088658 - AluSx SINE Alu -18 294 1 563 257 29 23 chr1_random 7067783 7067954 -2088165 - MLT1A2 LTR MaLR -123 251 80 743 212 72 14 chr1_random 7068061 7068366 -2087753 + MLT1B LTR MaLR 16 373 -17 2034 70 45 7 chr1_random 7068547 7068834 -2087285 - AluSq SINE Alu -15 298 1 225 264 271 0 chr1_random 7069535 7069664 -2086455 + L2 LINE L2 3104 3267 -5 464 254 176 5 chr1_random 7069780 7069973 -2086146 + MER67A LTR ERV1 1 226 -317 1779 167 0 3 chr1_random 7070094 7070394 -2085725 - AluJb SINE Alu -13 299 1 2219 183 136 66 chr1_random 7070398 7071125 -2084994 - L1MC3 LINE L1 -7 7778 7001 300 102 0 85 chr1_random 7071606 7071665 -2084454 - Charlie8 DNA MER1_type -2261 156 103 2527 39 0 7 chr1_random 7072008 7072314 -2083805 + AluY SINE Alu 1 304 -7 3816 86 24 4 chr1_random 7072636 7073137 -2082982 + MER9 LTR ERVK 1 511 0 4515 58 8 3 chr1_random 7073137 7073726 -2082393 + HERVK9 LTR ERVK 1 592 -5324 * 11634 63 9 2 chr1_random 7073718 7075236 -2080883 + HERVK9 LTR ERVK 1259 2786 -3130 1886 30 0 0 chr1_random 7075236 7075466 -2080653 + HERVK9 LTR ERVK 3711 3940 -1976 2090 120 3 6 chr1_random 7075467 7075792 -2080327 + HERVK9 LTR ERVK 4583 4906 -1010 304 26 0 0 chr1_random 7075787 7075826 -2080293 - HERVK9 LTR ERVK -115 5801 5763 * 1830 115 11 7 chr1_random 7075827 7076114 -2080005 + AluY SINE Alu 1 288 -23 253 271 0 0 chr1_random 7076128 7076187 -2079932 - LTR49-int LTR ERV1 -4080 791 733 314 311 0 19 chr1_random 7076344 7076450 -2079669 - LTR49-int LTR ERV1 -3811 2520 2417 2246 93 3 3 chr1_random 7076845 7077156 -2078963 - AluY SINE Alu 0 311 1 297 203 121 18 chr1_random 7078547 7078640 -2077479 + MIR SINE MIR 64 162 -46 750 267 70 47 chr1_random 7078957 7079379 -2076740 - L1MEc LINE L1 -5497 899 465 1850 155 3 10 chr1_random 7079379 7079688 -2076431 - AluSp SINE Alu -1 312 6 750 267 70 47 chr1_random 7079688 7079710 -2076409 - L1MEc LINE L1 -5931 465 445 205 203 95 40 chr1_random 7081446 7081520 -2074599 - L2 LINE L2 -4 3268 3191 272 294 43 80 chr1_random 7081712 7081899 -2074220 + L2 LINE L2 2993 3172 -100 195 315 128 20 chr1_random 7082364 7082513 -2073606 + MIR SINE MIR 76 240 -22 1443 134 0 67 chr1_random 7084182 7084496 -2071623 - AluSx SINE Alu -7 305 13 287 155 0 40 chr1_random 7084514 7084598 -2071521 - Alu SINE Alu -6 296 243 321 205 12 48 chr1_random 7085211 7085294 -2070825 + HERV16 LTR ERVL 349 428 -4568 747 238 38 21 chr1_random 7085969 7086204 -2069915 - L1MB5 LINE L1 -8 6166 5928 292 300 129 24 chr1_random 7086337 7086507 -2069612 - L1MB5 LINE L1 -540 5638 5451 273 306 0 14 chr1_random 7086981 7087053 -2069066 - MIR SINE MIR -186 76 6 1735 189 113 0 chr1_random 7088677 7089032 -2067087 - MSTD LTR MaLR 0 396 2 5020 21 0 0 chr1_random 7089766 7090329 -2065790 - L1PA3 LINE L1 0 6155 5593 827 180 0 0 chr1_random 7091955 7092083 -2064036 - FLAM_A SINE Alu -5 128 1 2099 98 0 3 chr1_random 7092089 7092384 -2063735 - AluSx SINE Alu -18 294 1 29 0 0 0 chr1_random 7092476 7092505 -2063614 + AT_rich Low_complexity Low_complexity 1 29 0 260 317 14 35 chr1_random 7093900 7094045 -2062074 + (TATG)n Simple_repeat Simple_repeat 4 145 0 423 282 5 53 chr1_random 7094064 7094252 -2061867 + (TG)n Simple_repeat Simple_repeat 2 180 0 236 379 102 13 chr1_random 7096681 7097053 -2059066 - MARNA DNA Mariner -7 579 175 192 357 0 0 chr1_random 7097659 7097729 -2058390 - L3 LINE CR1 0 1577 1508 484 307 68 49 chr1_random 7097836 7098452 -2057667 - L1ME4a LINE L1 -11 6110 5483 237 33 0 0 chr1_random 7098868 7098898 -2057221 + (T)n Simple_repeat Simple_repeat 1 30 0 702 170 0 50 chr1_random 7098998 7099139 -2056980 - AluJo SINE Alu -177 135 2 808 251 6 0 chr1_random 7099430 7099613 -2056506 - LTR2 LTR ERV1 0 449 266 354 301 6 81 chr1_random 7099609 7099782 -2056337 - LTR2 LTR ERV1 -289 160 1 * 287 303 8 17 chr1_random 7100259 7100378 -2055741 + (TATATG)n Simple_repeat Simple_repeat 1 118 0 * 553 118 69 22 chr1_random 7100331 7100793 -2055326 + (TAGA)n Simple_repeat Simple_repeat 1 483 0 781 303 141 17 chr1_random 7101354 7101836 -2054283 - MLT1K LTR MaLR -9 579 38 263 242 84 21 chr1_random 7104206 7104301 -2051818 + MIR SINE MIR 66 166 -96 611 229 35 24 chr1_random 7104922 7105092 -2051027 - MLT1B LTR MaLR -35 355 184 22 35 0 0 chr1_random 7106886 7106915 -2049204 + AT_rich Low_complexity Low_complexity 1 29 0 2090 98 3 0 chr1_random 7107758 7108044 -2048075 - AluSx SINE Alu -24 288 2 211 204 0 0 chr1_random 7109705 7109749 -2046370 + GA-rich Low_complexity Low_complexity 2 45 0 333 203 16 0 chr1_random 7114212 7114276 -2041843 - AluSc SINE Alu -117 182 118 677 285 77 8 chr1_random 7114291 7114656 -2041463 - L1M4 LINE L1 -2389 3757 3368 191 238 79 16 chr1_random 7118191 7118254 -2037865 + L2 LINE L2 2920 2986 -327 525 239 169 109 chr1_random 7118306 7118691 -2037428 + LTR16C LTR ERVL 69 476 -15 843 121 53 0 chr1_random 7118869 7119001 -2037118 - FLAM_C SINE Alu -4 139 1 727 224 24 12 chr1_random 7119179 7119344 -2036775 - MER58A DNA MER1_type -18 206 40 4804 232 122 25 chr1_random 7119351 7121153 -2034966 + L1M4b LINE L1 12 2002 -4853 366 267 0 0 chr1_random 7121153 7121438 -2034681 + (CA)n Simple_repeat Simple_repeat 1 285 0 992 302 41 8 chr1_random 7121469 7122038 -2034081 + L1M4b LINE L1 1983 2723 -4415 862 172 108 39 chr1_random 7122038 7122242 -2033877 + L1MB8 LINE L1 5894 6111 -67 511 242 91 0 chr1_random 7124821 7124953 -2031166 - MER103 DNA DNA -21 145 2 3797 160 38 14 chr1_random 7125302 7125958 -2030161 - L1MC1 LINE L1 0 6333 5662 247 173 0 0 chr1_random 7126938 7126997 -2029122 - Charlie5 DNA MER1_type -2489 123 65 2000 158 75 3 chr1_random 7127581 7127941 -2028178 - MLT1B LTR MaLR -4 386 1 336 323 65 7 chr1_random 7130108 7130263 -2025856 - MIR SINE MIR -17 245 82 979 163 6 17 chr1_random 7130438 7130660 -2025459 - AluJb SINE Alu 0 312 137 192 125 0 0 chr1_random 7130718 7130750 -2025369 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1946 93 11 14 chr1_random 7130751 7131030 -2025089 - AluSx SINE Alu -27 285 8 895 271 118 34 chr1_random 7131041 7131455 -2024664 - L1ME1 LINE L1 -44 6122 5674 765 205 0 54 chr1_random 7131457 7131642 -2024477 + MER4A LTR ERV1 1 175 -489 1636 126 13 82 chr1_random 7131687 7131947 -2024172 + MER4A LTR ERV1 369 605 -59 2458 43 0 3 chr1_random 7131947 7132247 -2023872 - AluY SINE Alu -12 299 1 1636 126 13 82 chr1_random 7132247 7132303 -2023816 + MER4A LTR ERV1 605 663 -1 1391 202 99 69 chr1_random 7132304 7132642 -2023477 - L1ME1 LINE L1 -491 5675 5349 1964 135 3 0 chr1_random 7132642 7132931 -2023188 - AluSx SINE Alu -17 295 6 1391 202 99 69 chr1_random 7132931 7133005 -2023114 - L1ME1 LINE L1 -817 5349 5279 1964 129 0 16 chr1_random 7133005 7133315 -2022804 - AluSx SINE Alu -7 305 1 1391 202 99 69 chr1_random 7133315 7133656 -2022463 - L1ME1 LINE L1 -887 5279 4897 1308 114 0 0 chr1_random 7133661 7133837 -2022282 + AluSg SINE Alu 1 176 -134 411 297 187 0 chr1_random 7533848 7534003 -1622116 - L2 LINE L2 -1665 1649 1466 21 36 0 0 chr1_random 7536296 7536324 -1619795 + AT_rich Low_complexity Low_complexity 1 28 0 333 306 42 28 chr1_random 7538204 7538348 -1617771 + MIR SINE MIR 6 151 -111 287 252 24 122 chr1_random 7539027 7539150 -1616969 - L2 LINE L2 -19 3294 3184 195 42 0 0 chr1_random 7539156 7539180 -1616939 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1100 80 31 0 chr1_random 7539816 7539979 -1616140 - L1MA3 LINE L1 0 6305 6138 307 384 35 9 chr1_random 7540394 7540623 -1615496 - L1ME3 LINE L1 -281 5881 5647 1409 187 29 54 chr1_random 7540859 7541174 -1614945 + MER68 LTR ERV1 1 307 -255 263 376 85 14 chr1_random 7541449 7541590 -1614529 - L2 LINE L2 0 3272 3122 2154 173 31 28 chr1_random 7542238 7542785 -1613334 + MLT2A2 LTR ERVL 3 554 0 1853 163 3 0 chr1_random 7543106 7543420 -1612699 + AluSx SINE Alu 1 315 0 22 35 0 0 chr1_random 7543720 7543749 -1612370 + AT_rich Low_complexity Low_complexity 1 29 0 2137 68 0 29 chr1_random 7543784 7544065 -1612054 - AluY SINE Alu -38 273 1 744 307 193 8 chr1_random 7544283 7544801 -1611318 + MLT2F LTR ERVL 37 650 -13 730 291 90 46 chr1_random 7545460 7545986 -1610133 + ERVL LTR ERVL 764 1190 -4295 1187 310 41 17 chr1_random 7546034 7546808 -1609311 + ERVL LTR ERVL 1347 2185 -3579 466 308 209 6 chr1_random 7546834 7547016 -1609103 - MIR SINE MIR -25 237 19 238 250 0 0 chr1_random 7547450 7547502 -1608617 + (TG)n Simple_repeat Simple_repeat 1 52 0 4379 205 57 41 chr1_random 7548059 7548208 -1607911 + L1MB4 LINE L1 4022 4167 -2013 1625 178 13 45 chr1_random 7548208 7548517 -1607602 + AluJb SINE Alu 1 299 -13 4379 205 57 41 chr1_random 7548517 7550497 -1605622 + L1MB4 LINE L1 4167 6174 -6 549 258 162 45 chr1_random 7550500 7550749 -1605370 - MLT1E1 LTR MaLR -51 573 284 1214 215 23 8 chr1_random 7550778 7551034 -1605085 - MLT1E1 LTR MaLR -394 260 1 419 345 92 19 chr1_random 7551054 7551465 -1604654 + L1MC/D LINE L1 2386 2826 -3320 22 35 0 0 chr1_random 7551514 7551543 -1604576 + AT_rich Low_complexity Low_complexity 1 29 0 267 283 66 41 chr1_random 7551543 7551787 -1604332 + L1MC/D LINE L1 2915 3164 -2982 22 88 0 0 chr1_random 7551787 7551844 -1604275 + AT_rich Low_complexity Low_complexity 1 57 0 345 290 127 30 chr1_random 7551889 7552258 -1603861 + L1MC/D LINE L1 4029 4433 -1713 517 302 55 8 chr1_random 7552601 7552856 -1603263 + L1MC/D LINE L1 5311 5577 -2231 238 179 179 0 chr1_random 7552859 7552926 -1603193 + L1MC4 LINE L1 7055 7133 -909 414 0 0 0 chr1_random 7552929 7552975 -1603144 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr1_random 7554185 7554206 -1601913 + AT_rich Low_complexity Low_complexity 1 21 0 206 349 61 0 chr1_random 7554728 7554794 -1601325 - L3b LINE CR1 -105 1478 1409 * 215 151 38 19 chr1_random 7554779 7554832 -1601287 + L2 LINE L2 1598 1651 -1663 * 390 259 63 44 chr1_random 7554829 7554987 -1601132 - L2 LINE L2 -1415 1899 1739 231 235 0 0 chr1_random 7555617 7555668 -1600451 + L2 LINE L2 3262 3312 -1 2348 73 0 13 chr1_random 7555779 7556093 -1600026 + AluY SINE Alu 1 310 -1 264 239 86 13 chr1_random 7557213 7557435 -1598684 + MER5C DNA MER1_type 26 322 -2 21 0 0 0 chr1_random 7557757 7557778 -1598341 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr1_random 7557911 7557955 -1598164 + AT_rich Low_complexity Low_complexity 1 44 0 1994 115 0 14 chr1_random 7558081 7558369 -1597750 + AluSg SINE Alu 1 284 -26 31 26 0 0 chr1_random 7558372 7558410 -1597709 + AT_rich Low_complexity Low_complexity 1 38 0 1824 262 32 52 chr1_random 7558687 7559244 -1596875 + MLT2B3 LTR ERVL 1 546 -8 295 265 12 12 chr1_random 7559261 7559344 -1596775 - MIR SINE MIR -4 258 176 226 237 13 26 chr1_random 7559345 7559421 -1596698 - MLT1J LTR MaLR -24 487 413 1702 53 0 0 chr1_random 7559686 7559894 -1596225 - AluY SINE Alu -1 310 103 684 210 32 73 chr1_random 7560164 7560316 -1595803 - MER2 DNA MER2_type -135 210 68 2046 116 7 3 chr1_random 7560316 7560618 -1595501 - AluSp SINE Alu -10 303 1 684 210 32 73 chr1_random 7560618 7560684 -1595435 - MER2 DNA MER2_type -277 68 1 319 350 77 0 chr1_random 7562374 7562517 -1593602 + MIR SINE MIR 1 154 -108 21 0 0 0 chr1_random 7562795 7562816 -1593303 + AT_rich Low_complexity Low_complexity 1 21 0 998 200 85 107 chr1_random 7562827 7563237 -1592882 + MER57A LTR ERV1 3 403 0 2215 112 0 0 chr1_random 7563268 7563555 -1592564 - AluSx SINE Alu -22 290 4 388 291 138 16 chr1_random 7563814 7564003 -1592116 + MIR SINE MIR 24 235 -27 506 177 105 157 chr1_random 7564386 7564634 -1591485 - MIR SINE MIR -21 241 7 21 57 0 0 chr1_random 7564751 7564786 -1591333 + AT_rich Low_complexity Low_complexity 1 35 0 682 335 133 30 chr1_random 7565513 7566174 -1589945 + L2 LINE L2 2262 2989 -324 480 174 0 0 chr1_random 7566175 7566261 -1589858 - AluSc SINE Alu -12 297 212 1479 264 115 19 chr1_random 7566413 7566981 -1589138 + MLT1G LTR MaLR 2 590 0 642 97 97 0 chr1_random 7567073 7567373 -1588746 + (TA)n Simple_repeat Simple_repeat 1 329 0 315 139 76 7 chr1_random 7567389 7567533 -1588586 + (TA)n Simple_repeat Simple_repeat 2 155 0 2848 116 22 0 chr1_random 7567538 7567942 -1588177 - MLT2A2 LTR ERVL -40 413 1 2218 135 19 19 chr1_random 7568916 7569280 -1586839 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr1_random 7569363 7569389 -1586730 + AT_rich Low_complexity Low_complexity 1 26 0 1058 289 32 71 chr1_random 7569566 7570466 -1585653 + L1MEc LINE L1 1545 2409 -3987 1972 159 37 6 chr1_random 7570513 7570866 -1585253 - THE1B LTR MaLR 0 364 1 3005 116 2 14 chr1_random 7570866 7571306 -1584813 - THE1B-int LTR MaLR 0 1580 1146 1059 147 0 0 chr1_random 7571306 7571553 -1584566 + (TA)n Simple_repeat Simple_repeat 1 247 0 192 40 0 0 chr1_random 7571562 7571587 -1584532 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 906 130 0 0 chr1_random 7571587 7571710 -1584409 - AluSg/x SINE Alu -60 250 128 1374 74 0 11 chr1_random 7571715 7571905 -1584214 - L1PA5 LINE L1 -2 6152 5965 2001 36 8 4 chr1_random 7572067 7572318 -1583801 - L1PA5 LINE L1 -133 6021 5770 216 0 0 0 chr1_random 7572338 7572362 -1583757 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5336 30 15 22 chr1_random 7572419 7573091 -1583028 - L1HS LINE L1 -6 6149 5483 901 89 16 0 chr1_random 7573091 7573215 -1582904 - AluSp SINE Alu -187 126 1 8823 178 16 18 chr1_random 7573218 7575706 -1580413 - L1MA2 LINE L1 -52 7671 4972 2284 81 0 10 chr1_random 7575706 7576003 -1580116 - AluY SINE Alu -15 296 3 8823 178 16 18 chr1_random 7576003 7576767 -1579352 - L1MA2 LINE L1 -2751 4972 4208 17356 166 23 68 chr1_random 7576767 7577002 -1579117 - L1MA2 LINE L1 -4042 3523 3279 2404 94 23 3 chr1_random 7577002 7577354 -1578765 - L1PA10 LINE L1 -16 6152 5794 17356 166 23 68 chr1_random 7577354 7577556 -1578563 - L1MA2 LINE L1 -4286 3279 3069 186 43 0 0 chr1_random 7577556 7577579 -1578540 + (CA)n Simple_repeat Simple_repeat 2 24 0 17356 166 23 68 chr1_random 7577579 7577605 -1578514 - L1MA2 LINE L1 -4496 3069 3043 351 0 0 0 chr1_random 7577605 7577644 -1578475 + (TAA)n Simple_repeat Simple_repeat 2 40 0 17356 166 23 68 chr1_random 7577644 7580851 -1575268 - L1MA2 LINE L1 -4522 3043 17 395 208 62 31 chr1_random 7580860 7580956 -1575163 + LTR52 LTR ERVL 49 147 -274 671 273 243 52 chr1_random 7581779 7582552 -1573567 + L2 LINE L2 1362 2302 -1012 2184 109 0 6 chr1_random 7582552 7582863 -1573256 - AluSc SINE Alu 0 309 1 671 273 243 52 chr1_random 7582863 7582911 -1573208 + L2 LINE L2 2302 2340 -974 1038 222 18 4 chr1_random 7582921 7583146 -1572973 + MLT1D LTR MaLR 3 230 -275 182 91 30 0 chr1_random 7583232 7583265 -1572854 + T-rich Low_complexity Low_complexity 3 36 0 238 172 0 35 chr1_random 7583385 7583443 -1572676 + T-rich Low_complexity Low_complexity 3 58 0 24 0 0 0 chr1_random 7585110 7585134 -1570985 + AT_rich Low_complexity Low_complexity 1 24 0 10085 102 16 37 chr1_random 7585337 7585367 -1570752 - SVA Other Other -6 1380 1351 186 65 32 0 chr1_random 7585367 7585398 -1570721 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 10085 102 16 37 chr1_random 7585398 7586765 -1569354 - SVA Other Other -35 1351 13 338 305 42 11 chr1_random 7587693 7587995 -1568124 + L1MC/D LINE L1 5197 5503 -692 1320 182 46 24 chr1_random 7588322 7588651 -1567468 - L1MCa LINE L1 -4996 1430 1095 401 182 35 56 chr1_random 7588690 7588858 -1567261 + MLT1D LTR MaLR 78 299 -206 1027 204 41 109 chr1_random 7588876 7589342 -1566777 - LTR8A LTR ERV1 -7 720 287 707 214 14 149 chr1_random 7589433 7589728 -1566391 - LTR8A LTR ERV1 -439 288 34 917 191 74 5 chr1_random 7589744 7589933 -1566186 + MLT1D LTR MaLR 304 505 0 317 282 70 61 chr1_random 7590227 7590702 -1565417 + L1M4 LINE L1 2809 3287 -2859 534 320 92 7 chr1_random 7590937 7590964 -1565155 - LTR16C LTR ERVL -9 482 459 3741 107 20 2 chr1_random 7590964 7591508 -1564611 + MER41A LTR ERV1 1 554 0 534 320 92 7 chr1_random 7591508 7591752 -1564367 - LTR16C LTR ERVL -32 459 188 340 133 205 24 chr1_random 7592776 7592859 -1563260 + MER4A LTR ERV1 1 98 -566 * 1662 123 152 103 chr1_random 7592855 7593045 -1563074 + MER4A LTR ERV1 257 436 -228 1773 153 24 20 chr1_random 7593045 7593339 -1562780 - AluSx SINE Alu -17 295 1 1662 123 152 103 chr1_random 7593339 7593537 -1562582 + MER4A LTR ERV1 436 664 0 194 91 30 0 chr1_random 7594354 7594387 -1561732 + (TA)n Simple_repeat Simple_repeat 2 35 0 190 81 54 0 chr1_random 7594427 7594464 -1561655 + (TA)n Simple_repeat Simple_repeat 1 39 0 186 207 0 0 chr1_random 7594566 7594624 -1561495 + (TA)n Simple_repeat Simple_repeat 2 59 0 1728 258 35 20 chr1_random 7594725 7595264 -1560855 - L1ME2 LINE L1 -133 6031 5485 198 0 0 0 chr1_random 7595266 7595288 -1560831 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1792 109 38 0 chr1_random 7595293 7595559 -1560560 - AluY SINE Alu -35 276 1 200 250 0 0 chr1_random 7595585 7595625 -1560494 - L2 LINE L2 -5 3308 3269 280 281 10 0 chr1_random 7595645 7595741 -1560378 + L1MC4 LINE L1 6606 6702 -1340 1213 271 93 10 chr1_random 7595920 7596799 -1559320 - L1ME2 LINE L1 -682 5480 4513 1308 179 24 92 chr1_random 7597046 7597382 -1558737 - AluSp SINE Alu 0 313 1 232 176 0 0 chr1_random 7597449 7597500 -1558619 - LTR66 LTR ERVL -171 439 389 1531 292 38 18 chr1_random 7597502 7598159 -1557960 - L1ME2 LINE L1 -1849 4297 3628 671 199 168 15 chr1_random 7598755 7598843 -1557276 + MLT2C1 LTR ERVL 1 74 -323 532 26 53 0 chr1_random 7598843 7598919 -1557200 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 671 199 168 15 chr1_random 7598919 7599026 -1557093 + MLT2C1 LTR ERVL 74 226 -171 276 125 0 21 chr1_random 7599072 7599120 -1556999 + MLT2B2 LTR ERVL 469 515 0 21 0 0 0 chr1_random 7600510 7600531 -1555588 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr1_random 7601477 7601510 -1554609 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr1_random 7601728 7601758 -1554361 + AT_rich Low_complexity Low_complexity 1 30 0 234 333 42 67 chr1_random 7602350 7602470 -1553649 + MIR SINE MIR 24 140 -68 983 245 68 39 chr1_random 7602817 7602915 -1553204 + MLT1E3 LTR MaLR 306 400 -224 342 0 0 0 chr1_random 7602915 7602953 -1553166 + (CA)n Simple_repeat Simple_repeat 1 38 0 983 245 68 39 chr1_random 7602953 7603164 -1552955 + MLT1E3 LTR MaLR 400 624 0 416 314 154 6 chr1_random 7603425 7603581 -1552538 + MER5A DNA MER1_type 4 182 -7 199 372 44 9 chr1_random 7603974 7604087 -1552032 + MER5A DNA MER1_type 72 188 -1 774 211 0 0 chr1_random 7605351 7605498 -1550621 + MLT2B1 LTR ERVL 1 147 -373 2052 187 36 29 chr1_random 7605504 7605921 -1550198 + MSTB1 LTR MaLR 6 425 -7 852 245 63 65 chr1_random 7605929 7606250 -1549869 + MLT2B1 LTR ERVL 145 519 -1 233 56 0 28 chr1_random 7606510 7606546 -1549573 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 280 0 0 chr1_random 7607522 7607572 -1548547 - L2 LINE L2 0 3313 3264 865 128 54 20 chr1_random 7608042 7608190 -1547929 - FRAM SINE Alu -20 156 4 233 331 25 25 chr1_random 7608301 7608422 -1547697 - MIR SINE MIR -89 173 53 2443 62 0 0 chr1_random 7608657 7608961 -1547158 - AluY SINE Alu -7 304 1 511 258 118 34 chr1_random 7609024 7609202 -1546917 - MIR SINE MIR 0 262 70 21 36 0 0 chr1_random 7609493 7609521 -1546598 + AT_rich Low_complexity Low_complexity 1 28 0 283 278 51 80 chr1_random 7609905 7610081 -1546038 - L1MCc LINE L1 -5377 1046 876 239 143 24 0 chr1_random 7610987 7611029 -1545090 - MIR SINE MIR -110 152 110 282 375 15 15 chr1_random 7611774 7611910 -1544209 + L2 LINE L2 3132 3267 -5 288 305 42 42 chr1_random 7612643 7612738 -1543381 - MIR SINE MIR -148 114 20 345 236 84 62 chr1_random 7614392 7614570 -1541549 + MIR SINE MIR 75 256 -6 2324 129 0 3 chr1_random 7615319 7615682 -1540437 - L1PB1 LINE L1 -8 6143 5782 451 171 13 20 chr1_random 7615694 7615846 -1540273 + (TA)n Simple_repeat Simple_repeat 2 152 0 3247 117 48 6 chr1_random 7615846 7616321 -1539798 - L1PB1 LINE L1 -360 5791 5289 198 0 0 0 chr1_random 7616321 7616343 -1539776 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3247 117 48 6 chr1_random 7616343 7616427 -1539692 - L1PB1 LINE L1 -862 5289 5210 303 341 0 0 chr1_random 7616434 7616516 -1539603 - MIR3 SINE MIR -15 193 112 1897 139 147 8 chr1_random 7616555 7616929 -1539190 + MSTA LTR MaLR 1 426 -2 218 105 26 0 chr1_random 7617060 7617098 -1539021 + (TA)n Simple_repeat Simple_repeat 2 40 0 309 273 40 30 chr1_random 7617614 7617713 -1538406 + MER5A DNA MER1_type 10 109 -80 22 0 0 0 chr1_random 7618110 7618132 -1537987 + AT_rich Low_complexity Low_complexity 1 22 0 2189 65 36 0 chr1_random 7619049 7619326 -1536793 - AluY SINE Alu -23 288 2 201 254 0 0 chr1_random 7619339 7619398 -1536721 + (TA)n Simple_repeat Simple_repeat 2 60 0 549 279 75 0 chr1_random 7619462 7619609 -1536510 - MER5B DNA MER1_type -19 159 2 252 0 0 0 chr1_random 7620478 7620506 -1535613 + (TG)n Simple_repeat Simple_repeat 1 28 0 192 268 0 0 chr1_random 7622857 7622898 -1533221 - L2 LINE L2 -8 3305 3265 201 94 0 0 chr1_random 7623437 7623469 -1532650 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 2856 6 0 0 chr1_random 7624106 7624420 -1531699 - AluYb8 SINE Alu -4 314 1 374 338 64 5 chr1_random 7625982 7626186 -1529933 + L2 LINE L2 2931 3146 -167 241 263 12 88 chr1_random 7626342 7626422 -1529697 + L2 LINE L2 3138 3211 -61 207 299 26 0 chr1_random 7626479 7626556 -1529563 + MIR SINE MIR 120 198 -64 207 292 146 31 chr1_random 7626542 7626672 -1529447 - L2 LINE L2 -1 3312 3168 249 108 0 0 chr1_random 7627404 7627441 -1528678 + (GGGA)n Simple_repeat Simple_repeat 2 38 0 * 851 97 46 17 chr1_random 7627440 7627615 -1528504 + GA-rich Low_complexity Low_complexity 1 180 0 1248 55 0 17 chr1_random 7627633 7627814 -1528305 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 216 167 0 0 chr1_random 7628271 7628307 -1527812 + CT-rich Low_complexity Low_complexity 3 38 0 344 314 69 53 chr1_random 7628461 7628495 -1527624 - MIR SINE MIR -70 192 160 2227 67 7 10 chr1_random 7628495 7628792 -1527327 - AluY SINE Alu -15 296 1 344 314 69 53 chr1_random 7628792 7628945 -1527174 - MIR SINE MIR -102 160 2 21 0 0 0 chr1_random 7629806 7629827 -1526292 + AT_rich Low_complexity Low_complexity 1 21 0 480 232 43 63 chr1_random 7630020 7630227 -1525892 - AluSg/x SINE Alu -22 290 88 2144 200 21 26 chr1_random 7631692 7632161 -1523958 + MLT1C LTR MaLR 1 467 0 254 322 56 0 chr1_random 7632352 7632442 -1523677 + MIR3 SINE MIR 114 208 0 2580 36 7 0 chr1_random 7632472 7632781 -1523338 + AluY SINE Alu 1 311 0 24 85 0 0 chr1_random 7634567 7634626 -1521493 + AT_rich Low_complexity Low_complexity 1 59 0 23 68 0 0 chr1_random 7634835 7634879 -1521240 + AT_rich Low_complexity Low_complexity 1 44 0 8194 210 74 19 chr1_random 7635532 7640047 -1516072 + L1MC1 LINE L1 30 4832 -1594 5634 191 11 11 chr1_random 7640066 7641193 -1514926 + L1MC1 LINE L1 5480 6606 -7 1696 154 76 22 chr1_random 7642096 7642452 -1513667 + THE1C LTR MaLR 1 375 0 8852 145 26 39 chr1_random 7642454 7644052 -1512067 + THE1C-int LTR MaLR 3 1580 0 1510 162 97 29 chr1_random 7644052 7644403 -1511716 + THE1C LTR MaLR 1 375 0 187 172 0 47 chr1_random 7644628 7644692 -1511427 + (TTA)n Simple_repeat Simple_repeat 1 61 0 249 108 0 0 chr1_random 7646640 7646677 -1509442 + MIR SINE MIR 103 139 -123 1647 278 79 3 chr1_random 7647652 7648371 -1507748 - L1M4 LINE L1 -968 5178 4405 213 39 0 0 chr1_random 7649037 7649063 -1507056 + (TC)n Simple_repeat Simple_repeat 1 26 0 1858 171 15 21 chr1_random 7649350 7649689 -1506430 + MER1B DNA MER1_type 1 337 0 22 35 0 0 chr1_random 7650726 7650755 -1505364 + AT_rich Low_complexity Low_complexity 1 29 0 543 314 59 4 chr1_random 7650808 7651047 -1505072 + MER46C DNA MER2_type 4 255 -83 240 218 18 45 chr1_random 7651051 7651161 -1504958 + (TA)n Simple_repeat Simple_repeat 2 108 0 22 0 0 0 chr1_random 7651310 7651332 -1504787 + AT_rich Low_complexity Low_complexity 1 22 0 1841 174 122 10 chr1_random 7651589 7651974 -1504145 - MSTA LTR MaLR 0 428 1 7730 159 12 53 chr1_random 7651981 7653478 -1502641 - MSTA-int LTR MaLR -7 1573 139 728 291 21 21 chr1_random 7653480 7653820 -1502299 + L1MD2 LINE L1 5153 5492 -934 1015 206 8 16 chr1_random 7653833 7654081 -1502038 + L1MD2 LINE L1 5608 5853 -669 922 185 73 106 chr1_random 7654077 7654379 -1501740 + L1MD2 LINE L1 6292 6583 -56 * 483 163 0 35 chr1_random 7654380 7654466 -1501653 + L1P LINE L1 4019 4101 -2045 1085 232 95 63 chr1_random 7655566 7656027 -1500092 + L1ME3A LINE L1 5437 5912 -258 1616 251 114 60 chr1_random 7656028 7656642 -1499477 - MLT1E1 LTR MaLR -2 652 6 345 255 120 79 chr1_random 7656654 7656870 -1499249 + L1ME3A LINE L1 5910 6134 -36 623 82 82 10 chr1_random 7656952 7657050 -1499069 + MER11A LTR ERVK 1 105 -1161 2058 114 11 23 chr1_random 7657154 7657504 -1498615 + MER11A LTR ERVK 921 1266 0 2035 128 7 0 chr1_random 7657746 7658036 -1498083 - AluSp SINE Alu -21 292 1 860 295 156 11 chr1_random 7658475 7658912 -1497207 + L2 LINE L2 373 872 -2442 1655 296 49 6 chr1_random 7658990 7659540 -1496579 + L2 LINE L2 1816 2389 -925 2876 162 95 27 chr1_random 7659540 7660255 -1495864 - L1MCa LINE L1 -4868 1558 795 851 184 19 6 chr1_random 7660360 7660518 -1495601 - L1MCa LINE L1 -6247 179 20 1401 297 32 93 chr1_random 7660546 7661521 -1494598 + L2 LINE L2 2395 3306 -7 24 0 0 0 chr1_random 7661552 7661576 -1494543 + AT_rich Low_complexity Low_complexity 1 24 0 29 47 0 0 chr1_random 7661723 7661766 -1494353 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr1_random 7662169 7662198 -1493921 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1_random 7662686 7662715 -1493404 + AT_rich Low_complexity Low_complexity 1 29 0 8009 207 27 102 chr1_random 7662936 7665590 -1490529 - L1MC3 LINE L1 -16 8187 5721 2088 142 0 6 chr1_random 7665590 7665901 -1490218 - AluSg SINE Alu -1 309 1 8009 207 27 102 chr1_random 7665901 7665985 -1490134 - L1MC3 LINE L1 -2482 5721 5632 1578 151 77 21 chr1_random 7666056 7666381 -1489738 + MER61A LTR ERV1 1 343 0 2356 193 45 32 chr1_random 7666381 7666941 -1489178 + MER61A-int LTR ERV1 1 567 -4650 23428 115 30 15 chr1_random 7666953 7670659 -1485460 + MER61A-int LTR ERV1 1655 5216 -1 1418 172 97 22 chr1_random 7670659 7670978 -1485141 + MER61A LTR ERV1 1 343 0 2766 240 81 43 chr1_random 7670986 7672183 -1483936 - L1MC3 LINE L1 -1042 5522 4280 1562 277 34 2 chr1_random 7672183 7672706 -1483413 - L1MC3 LINE L1 -3338 3226 2687 24 67 0 0 chr1_random 7672711 7672756 -1483363 + AT_rich Low_complexity Low_complexity 1 45 0 226 154 0 0 chr1_random 7672756 7672795 -1483324 - L1MC3 LINE L1 -3890 2674 2636 224 324 14 14 chr1_random 7674365 7674436 -1481683 + MIR SINE MIR 66 136 -72 1615 169 3 45 chr1_random 7675350 7675663 -1480456 + AluJo SINE Alu 1 300 -12 249 258 61 0 chr1_random 7677354 7677420 -1478699 - MIR SINE MIR -162 100 31 344 315 23 15 chr1_random 7677431 7677561 -1478558 + MIR SINE MIR 106 236 -26 188 33 0 33 chr1_random 7677668 7677698 -1478421 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 4374 72 18 0 chr1_random 7677698 7678271 -1477848 - L1PA7 LINE L1 -16 6138 5556 24 0 0 0 chr1_random 7678528 7678552 -1477567 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr1_random 7678581 7678635 -1477484 + AT_rich Low_complexity Low_complexity 1 54 0 981 106 0 0 chr1_random 7681743 7681875 -1474244 - AluSg/x SINE Alu -13 299 168 182 118 0 29 chr1_random 7682357 7682391 -1473728 - MIR SINE MIR -94 168 136 273 286 199 25 chr1_random 7682522 7682718 -1473401 - L3 LINE CR1 -291 1286 1057 1161 224 240 17 chr1_random 7683160 7683848 -1472271 - L1MC3 LINE L1 -4023 2541 1701 1344 221 72 23 chr1_random 7683860 7683955 -1472164 - MLT1A1 LTR MaLR 0 365 276 2108 129 0 0 chr1_random 7683955 7684257 -1471862 + AluSx SINE Alu 1 302 -10 1344 221 72 23 chr1_random 7684257 7684509 -1471610 - MLT1A1 LTR MaLR -89 276 1 1364 248 124 45 chr1_random 7684510 7685535 -1470584 - L1MC3 LINE L1 -4851 1194 555 467 339 79 55 chr1_random 7685654 7686058 -1470061 - L1MC3 LINE L1 -5480 565 152 30 27 0 0 chr1_random 7686620 7686657 -1469462 + AT_rich Low_complexity Low_complexity 1 37 0 5660 155 47 12 chr1_random 7686661 7688528 -1467591 + L1MA4 LINE L1 4332 6280 -20 37 39 0 0 chr1_random 7688539 7688590 -1467529 + AT_rich Low_complexity Low_complexity 1 51 0 3749 65 0 4 chr1_random 7690195 7690684 -1465435 - L1PA5 LINE L1 0 6154 5668 25 65 0 0 chr1_random 7692026 7692072 -1464047 + AT_rich Low_complexity Low_complexity 1 46 0 1680 155 0 44 chr1_random 7692154 7692477 -1463642 - AluSx SINE Alu 0 312 3 223 344 26 46 chr1_random 7692634 7692785 -1463334 + MER5B DNA MER1_type 2 149 -29 21 0 0 0 chr1_random 7693647 7693668 -1462451 + AT_rich Low_complexity Low_complexity 1 21 0 408 362 72 45 chr1_random 7694228 7694629 -1461490 - MLT1J LTR MaLR -98 413 2 7029 186 50 12 chr1_random 7694822 7696276 -1459843 + L1MB3 LINE L1 17 1526 -4858 3580 217 73 18 chr1_random 7696288 7697516 -1458603 + L1MB3 LINE L1 5128 6419 0 24 0 0 0 chr1_random 7698307 7698331 -1457788 + AT_rich Low_complexity Low_complexity 1 24 0 274 277 108 18 chr1_random 7699382 7699548 -1456571 - HAL1 LINE L1 -25 2482 2302 697 256 149 43 chr1_random 7699629 7700098 -1456021 - HAL1 LINE L1 -322 2185 1667 180 0 0 0 chr1_random 7700099 7700119 -1456000 + (A)n Simple_repeat Simple_repeat 1 20 0 295 319 22 49 chr1_random 7700161 7700346 -1455773 - HAL1 LINE L1 -864 1643 1464 607 335 13 18 chr1_random 7700414 7700638 -1455481 - MIR SINE MIR -38 224 2 1987 144 0 25 chr1_random 7700795 7701114 -1455005 - AluSx SINE Alu -1 311 1 2463 146 9 7 chr1_random 7701296 7701729 -1454390 - L1MA4A LINE L1 -4 7361 6928 343 111 3 18 chr1_random 7701736 7701802 -1454317 + AluJb SINE Alu 85 138 -164 280 236 0 42 chr1_random 7701806 7701878 -1454241 + AluS SINE Alu 232 300 0 527 173 0 45 chr1_random 7701882 7701992 -1454127 - L1MA4A LINE L1 -430 6935 6831 12326 221 27 33 chr1_random 7702011 7704128 -1451991 - L1PB2 LINE L1 -3 6864 4736 2025 128 50 34 chr1_random 7704128 7704486 -1451633 - THE1B LTR MaLR 0 364 1 11097 113 8 1 chr1_random 7704486 7706054 -1450065 - THE1B-int LTR MaLR 0 1580 1 1817 164 42 31 chr1_random 7706054 7706414 -1449705 - THE1B LTR MaLR 0 364 1 12326 221 27 33 chr1_random 7706414 7708117 -1448002 - L1PB2 LINE L1 -2129 4738 3027 443 69 14 0 chr1_random 7708117 7708189 -1447930 + (TA)n Simple_repeat Simple_repeat 1 73 0 1564 165 0 0 chr1_random 7708189 7708426 -1447693 - AluSx SINE Alu -34 278 42 491 97 14 0 chr1_random 7708426 7708498 -1447621 - AluS SINE Alu -240 73 1 12326 221 27 33 chr1_random 7708498 7712413 -1443706 - L1PB2 LINE L1 -3837 3030 3 2001 119 7 7 chr1_random 7712432 7712725 -1443394 - AluSc SINE Alu -16 293 1 7106 227 78 22 chr1_random 7712725 7715904 -1440215 - L1MA4A LINE L1 -524 6841 3433 5539 236 32 55 chr1_random 7715893 7717509 -1438610 - L1MA4A LINE L1 -4688 2521 942 * 403 179 26 0 chr1_random 7717588 7717666 -1438453 - L1MA4A LINE L1 -6569 640 561 441 335 81 13 chr1_random 7717913 7718149 -1437970 - MIR SINE MIR -8 254 3 2207 102 0 10 chr1_random 7720041 7720344 -1435775 + AluY SINE Alu 1 300 -11 440 314 50 6 chr1_random 7720731 7720890 -1435229 - MIR SINE MIR -50 212 47 21 0 0 0 chr1_random 7721372 7721393 -1434726 + AT_rich Low_complexity Low_complexity 1 21 0 232 369 41 25 chr1_random 7721526 7721648 -1434471 + MIR SINE MIR 3 126 -136 21 0 0 0 chr1_random 7721876 7721897 -1434222 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 0 31 chr1_random 7722133 7722451 -1433668 - AluSg1 SINE Alu 0 309 1 2333 74 24 0 chr1_random 7723073 7723369 -1432750 - AluSg SINE Alu -7 303 1 2045 103 11 14 chr1_random 7723460 7723768 -1432351 + AluSg SINE Alu 1 307 0 1643 165 23 44 chr1_random 7724590 7724978 -1431141 - L1MA8 LINE L1 0 6291 5912 23 33 0 0 chr1_random 7726125 7726155 -1429964 + AT_rich Low_complexity Low_complexity 1 30 0 249 152 0 0 chr1_random 7726546 7726592 -1429527 - LTR66 LTR ERVL -171 439 394 250 288 14 0 chr1_random 7726593 7726666 -1429453 + (TA)n Simple_repeat Simple_repeat 1 74 0 29865 74 4 1 chr1_random 7727390 7731378 -1424741 - L1P LINE L1 -2122 4024 22 21 36 0 0 chr1_random 7731433 7731461 -1424658 + AT_rich Low_complexity Low_complexity 1 28 0 1923 138 29 52 chr1_random 7731475 7731859 -1424260 + THE1C LTR MaLR 1 375 0 486 273 29 12 chr1_random 7732623 7732795 -1423324 + MER5B DNA MER1_type 2 176 -2 21 36 0 0 chr1_random 7733107 7733135 -1422984 + AT_rich Low_complexity Low_complexity 1 28 0 235 263 117 15 chr1_random 7734578 7734715 -1421404 - L1MC4 LINE L1 -974 7068 6918 216 0 0 0 chr1_random 7734719 7734743 -1421376 + (T)n Simple_repeat Simple_repeat 1 24 0 1344 203 55 17 chr1_random 7734806 7735096 -1421023 - MSTB LTR MaLR -4 422 122 301 283 123 71 chr1_random 7735292 7735561 -1420558 - L1MC4a LINE L1 -1330 6478 6196 495 26 53 0 chr1_random 7735688 7735764 -1420355 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 1945 111 61 0 chr1_random 7735764 7736043 -1420076 - AluSq SINE Alu -17 296 1 526 255 84 42 chr1_random 7736089 7736209 -1419910 - L1MC4a LINE L1 -1857 5951 5837 1648 163 14 0 chr1_random 7736209 7736485 -1419634 - AluJb SINE Alu -26 286 7 526 255 84 42 chr1_random 7736485 7736627 -1419492 - L1MC4a LINE L1 -1971 5837 5678 186 71 0 0 chr1_random 7737350 7737378 -1418741 + (CAG)n Simple_repeat Simple_repeat 2 29 0 24 0 0 0 chr1_random 7737680 7737704 -1418415 + AT_rich Low_complexity Low_complexity 1 24 0 235 268 0 0 chr1_random 7737704 7737775 -1418344 - L1M4 LINE L1 -3816 2330 2260 458 178 40 20 chr1_random 7737852 7737953 -1418166 - Tigger5 DNA MER2_type -2220 103 1 201 74 0 0 chr1_random 7738059 7738086 -1418033 + (T)n Simple_repeat Simple_repeat 1 27 0 237 244 47 12 chr1_random 7738490 7738576 -1417543 + L1MC4 LINE L1 6615 6703 -1339 * 260 315 0 0 chr1_random 7738549 7738638 -1417481 - L1MC4 LINE L1 -1340 6702 6614 476 354 47 24 chr1_random 7739683 7739937 -1416182 + MIR SINE MIR 2 261 -1 324 239 9 28 chr1_random 7740474 7740583 -1415536 - L1ME LINE L1 -310 5811 5705 2048 242 53 33 chr1_random 7740755 7741238 -1414881 - MER82 DNA MER2_type 0 653 151 2058 87 25 4 chr1_random 7741238 7741538 -1414581 - AluY SINE Alu 0 306 1 2048 242 53 33 chr1_random 7741538 7741693 -1414426 - MER82 DNA MER2_type -502 151 1 1956 179 43 26 chr1_random 7741941 7742485 -1413634 + MLT2A2 LTR ERVL 1 553 -1 207 93 23 47 chr1_random 7742988 7743031 -1413088 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1293 237 61 71 chr1_random 7743220 7743629 -1412490 - MLT1E2 LTR MaLR 0 626 222 5026 185 32 39 chr1_random 7743698 7744205 -1411914 - L1MA4 LINE L1 -6 7356 6847 2069 117 0 39 chr1_random 7744205 7744512 -1411607 - AluSg SINE Alu -12 298 4 5026 185 32 39 chr1_random 7744512 7745625 -1410494 - L1MA4 LINE L1 -515 6847 5738 * 6668 57 0 1 chr1_random 7745623 7746484 -1409635 - L1P LINE L1 -3553 2593 1734 16595 58 10 0 chr1_random 7746485 7749416 -1406703 + L1PA4 LINE L1 3200 6151 -4 8322 239 35 36 chr1_random 7749425 7753954 -1402165 - L1MA4 LINE L1 -1455 5753 1229 2594 242 7 0 chr1_random 7753966 7754511 -1401608 - L1MA4 LINE L1 -6660 549 1 1579 264 58 26 chr1_random 7754536 7755044 -1401075 + L1MC2 LINE L1 4321 4852 -1294 2061 211 14 5 chr1_random 7755044 7755462 -1400657 + MSTB LTR MaLR 1 422 -4 1579 264 58 26 chr1_random 7755462 7755556 -1400563 + L1MC2 LINE L1 4852 4942 -1204 2144 176 25 37 chr1_random 7755591 7756024 -1400095 + MSTC LTR MaLR 1 428 0 2341 306 116 76 chr1_random 7756051 7757599 -1398520 + MSTC-int LTR MaLR 43 1651 0 1411 155 42 6 chr1_random 7757600 7757929 -1398190 + MSTC LTR MaLR 2 428 0 4313 217 15 12 chr1_random 7757937 7759115 -1397004 + L1MC2 LINE L1 4978 6158 -186 225 336 20 7 chr1_random 7759535 7759681 -1396438 + HAL1 LINE L1 1528 1675 -832 302 296 23 0 chr1_random 7760240 7760328 -1395791 + L1MC4 LINE L1 6614 6703 -1339 2122 45 4 0 chr1_random 7761143 7761412 -1394707 - L1PA4 LINE L1 0 6155 5886 2173 48 48 31 chr1_random 7762012 7762304 -1393815 + AluY SINE Alu 1 297 -14 1475 239 16 38 chr1_random 7763552 7763734 -1392385 + L1M4 LINE L1 2813 2997 -3149 2313 72 7 0 chr1_random 7763734 7764026 -1392093 - AluSg SINE Alu -16 294 1 1475 239 16 38 chr1_random 7764026 7764391 -1391728 + L1M4 LINE L1 2997 3348 -2798 314 260 175 0 chr1_random 7764391 7764545 -1391574 + L1M4 LINE L1 3250 3430 -2716 234 305 63 11 chr1_random 7765164 7765259 -1390860 + MLT1J LTR MaLR 111 210 -301 212 393 30 12 chr1_random 7765543 7765711 -1390408 - MIR SINE MIR -3 259 89 414 0 0 0 chr1_random 7766148 7766194 -1389925 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1205 53 0 0 chr1_random 7766194 7766345 -1389774 - L1PA4 LINE L1 -18 6137 5987 456 283 30 30 chr1_random 7766880 7767046 -1389073 - MIR3 SINE MIR -3 205 40 210 37 0 0 chr1_random 7767233 7767260 -1388859 + (CA)n Simple_repeat Simple_repeat 2 28 0 220 289 84 0 chr1_random 7767996 7768079 -1388040 - MIR SINE MIR -55 207 118 447 287 9 0 chr1_random 7768238 7768346 -1387773 - MIR SINE MIR -114 148 40 620 304 100 25 chr1_random 7768676 7769114 -1387005 + LTR33 LTR ERVL 1 498 -23 246 62 0 0 chr1_random 7770050 7770082 -1386037 + (A)n Simple_repeat Simple_repeat 1 32 0 29 0 0 0 chr1_random 7771495 7771524 -1384595 + AT_rich Low_complexity Low_complexity 1 29 0 1916 139 0 0 chr1_random 7771652 7771918 -1384201 + AluSq SINE Alu 18 283 -30 1698 185 16 3 chr1_random 7772036 7772344 -1383775 - AluSx SINE Alu 0 312 1 5328 159 33 10 chr1_random 7772387 7773643 -1382476 - L1MA8 LINE L1 -7 6284 5000 765 170 7 7 chr1_random 7823690 7823825 -1332294 + MLT1D LTR MaLR 371 505 0 207 93 23 47 chr1_random 7824014 7824057 -1332062 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 1956 179 43 26 chr1_random 7824560 7825104 -1331015 - MLT2A2 LTR ERVL -1 553 1 2073 243 52 33 chr1_random 7825352 7825508 -1330611 + MER82 DNA MER2_type 1 153 -500 2059 87 25 4 chr1_random 7825508 7825808 -1330311 + AluY SINE Alu 1 306 0 2073 243 52 33 chr1_random 7825808 7826291 -1329828 + MER82 DNA MER2_type 153 653 0 324 239 9 28 chr1_random 7826463 7826572 -1329547 + L1ME LINE L1 5705 5811 -310 489 357 52 20 chr1_random 7827109 7827361 -1328758 - MIR SINE MIR -1 261 2 260 315 0 0 chr1_random 7828406 7828495 -1327624 + L1MC4 LINE L1 6614 6702 -1340 237 244 47 12 chr1_random 7828468 7828554 -1327565 - L1MC4 LINE L1 -1339 6703 6615 * 201 74 0 0 chr1_random 7828958 7828985 -1327134 + (A)n Simple_repeat Simple_repeat 1 27 0 458 178 40 20 chr1_random 7829091 7829192 -1326927 + Tigger5 DNA MER2_type 1 103 -2220 235 268 0 0 chr1_random 7829269 7829340 -1326779 + L1M4 LINE L1 2260 2330 -3816 24 0 0 0 chr1_random 7829340 7829364 -1326755 + AT_rich Low_complexity Low_complexity 1 24 0 186 71 0 0 chr1_random 7829666 7829694 -1326425 + (CTG)n Simple_repeat Simple_repeat 2 29 0 526 255 84 42 chr1_random 7830417 7830559 -1325560 + L1MC4a LINE L1 5678 5813 -1995 1648 163 14 0 chr1_random 7830559 7830835 -1325284 + AluJb SINE Alu 7 286 -26 526 255 84 42 chr1_random 7830835 7830955 -1325164 + L1MC4a LINE L1 5813 5951 -1857 1945 111 61 0 chr1_random 7831001 7831280 -1324839 + AluSq SINE Alu 1 296 -17 495 26 53 0 chr1_random 7831280 7831356 -1324763 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 8793 231 39 21 chr1_random 7831963 7834455 -1321664 - L1 LINE L1 -1455 4691 2156 2890 220 94 44 chr1_random 7834867 7835997 -1320122 - L1ME2 LINE L1 -11 6222 5032 4627 252 57 38 chr1_random 7836008 7836914 -1319205 - L1ME2 LINE L1 -2062 4153 3266 1760 145 6 55 chr1_random 7836914 7837225 -1318894 - AluJb SINE Alu -16 296 1 4627 252 57 38 chr1_random 7837225 7838410 -1317709 - L1ME2 LINE L1 -2949 3266 2057 1000 203 35 69 chr1_random 7838410 7838642 -1317477 + MER58A DNA MER1_type 1 224 0 4627 252 57 38 chr1_random 7838642 7838723 -1317396 - L1ME2 LINE L1 -4158 2057 1979 3252 272 98 31 chr1_random 7838796 7840489 -1315630 - L1ME2 LINE L1 -4569 1827 22 335 275 0 78 chr1_random 7840512 7840654 -1315465 + L3 LINE CR1 929 1059 -518 501 347 69 67 chr1_random 7840664 7841518 -1314601 - L2 LINE L2 0 3272 2410 361 247 62 10 chr1_random 7842186 7842283 -1313836 + MLT1J LTR MaLR 1 102 -409 529 327 63 37 chr1_random 7842449 7842798 -1313321 - LTR33 LTR ERVL -154 367 10 1011 229 119 10 chr1_random 7842822 7843124 -1312995 + MLT1J LTR MaLR 170 504 -7 2700 23 10 0 chr1_random 7843212 7843520 -1312599 - AluYa5 SINE Alu 0 311 1 324 396 42 4 chr1_random 7843592 7843832 -1312287 - L2 LINE L2 -2848 466 218 4671 184 22 19 chr1_random 7844578 7846302 -1309817 + L1MA4 LINE L1 4567 6300 0 3393 144 48 3 chr1_random 7846325 7846902 -1309217 + LTR26 LTR ERV1 1 603 0 2111 110 7 3 chr1_random 7847852 7848144 -1307975 + AluSg SINE Alu 15 307 -3 4517 154 22 15 chr1_random 7848412 7849270 -1306849 + L1MA4 LINE L1 5417 6280 -20 37 39 0 0 chr1_random 7849281 7849332 -1306787 + AT_rich Low_complexity Low_complexity 1 51 0 7182 52 11 0 chr1_random 7850937 7852395 -1303724 - L1PA5 LINE L1 0 6154 4691 27018 67 103 2 chr1_random 7852495 7857219 -1298900 + L1PA4 LINE L1 670 6012 -143 29 0 0 0 chr1_random 7857375 7857404 -1298715 + AT_rich Low_complexity Low_complexity 1 29 0 378 0 0 0 chr1_random 7857746 7857788 -1298331 + (CA)n Simple_repeat Simple_repeat 2 43 0 2210 48 48 31 chr1_random 7859327 7859619 -1296500 - AluY SINE Alu -14 297 1 2054 103 3 81 chr1_random 7859963 7860283 -1295836 - AluSq SINE Alu -18 295 1 257 367 41 25 chr1_random 7860379 7860575 -1295544 + LTR16C LTR ERVL 201 399 -92 2165 317 83 25 chr1_random 7860579 7861983 -1294136 + L2 LINE L2 1823 3299 -14 699 320 68 46 chr1_random 7862041 7862544 -1293575 - LTR33A LTR ERVL -8 515 2 858 347 25 11 chr1_random 7862551 7862986 -1293133 + LTR16B LTR ERVL 8 448 -16 364 134 45 0 chr1_random 7863355 7863422 -1292697 - MLT1B LTR MaLR 0 390 321 1184 73 7 13 chr1_random 7863422 7863573 -1292546 + AluSg SINE Alu 1 150 -160 24932 76 5 1 chr1_random 7863673 7867176 -1288943 - L1P LINE L1 -2606 3540 22 21 36 0 0 chr1_random 7867231 7867259 -1288860 + AT_rich Low_complexity Low_complexity 1 28 0 1949 138 29 52 chr1_random 7867273 7867657 -1288462 + THE1C LTR MaLR 1 375 0 2092 228 5 5 chr1_random 7870338 7870786 -1285333 - MST-int LTR MaLR -323 1328 881 388 271 31 141 chr1_random 7870922 7870971 -1285148 + L1MC5 LINE L1 6733 6786 -1175 2051 195 39 12 chr1_random 7870971 7871382 -1284737 + MSTB LTR MaLR 1 422 -4 388 271 31 141 chr1_random 7871382 7871879 -1284240 + L1MC5 LINE L1 6786 7219 -742 748 61 9 9 chr1_random 7873048 7873162 -1282957 - L1P LINE L1 -1079 5067 4954 * 7130 28 1 0 chr1_random 7873160 7874044 -1282075 + L1P LINE L1 4081 4965 -1181 7346 43 1 0 chr1_random 7874075 7875149 -1280970 + L1PA4 LINE L1 5077 6152 -3 808 267 73 17 chr1_random 7875948 7876304 -1279815 - MLT1D LTR MaLR -8 497 122 210 188 0 145 chr1_random 7876701 7876770 -1279349 + L2 LINE L2 3251 3309 -4 181 194 0 0 chr1_random 7879170 7879201 -1276918 + L2 LINE L2 3263 3293 -20 354 339 120 60 chr1_random 7879313 7879664 -1276455 - L2 LINE L2 -8 3264 2893 2128 161 16 0 chr1_random 7879778 7880156 -1275963 + L1PB4 LINE L1 5766 6149 -7 236 136 45 0 chr1_random 7880193 7880237 -1275882 - MIR SINE MIR -33 229 184 211 226 81 0 chr1_random 7880590 7880652 -1275467 - MIR SINE MIR -12 250 184 373 226 97 108 chr1_random 7881008 7881203 -1274916 - MLT1J LTR MaLR -210 301 109 459 291 68 0 chr1_random 7881297 7881445 -1274674 - MIR SINE MIR -59 203 46 331 256 112 0 chr1_random 7881496 7881621 -1274498 + MIR SINE MIR 78 216 -46 1842 154 15 80 chr1_random 7882369 7882759 -1273360 + MLT1A1 LTR MaLR 1 365 0 395 356 77 9 chr1_random 7882975 7883208 -1272911 - L1MC4a LINE L1 -1942 5866 5618 253 324 69 6 chr1_random 7883218 7883391 -1272728 - L1P4 LINE L1 -613 5555 5372 220 282 204 10 chr1_random 7883952 7884055 -1272064 - L2 LINE L2 -5 3308 3186 1757 198 28 8 chr1_random 7884144 7884502 -1271617 + MLT1A1 LTR MaLR 1 365 0 11949 87 2 3 chr1_random 7884638 7886341 -1269778 - L1P3 LINE L1 -4759 1702 2 576 306 83 8 chr1_random 7886823 7887065 -1269054 - MIR SINE MIR 0 262 3 1384 204 154 34 chr1_random 7887331 7887773 -1268346 + MLT1D LTR MaLR 7 501 -4 358 336 56 0 chr1_random 7887846 7887953 -1268166 - MIR SINE MIR -71 137 25 640 231 99 50 chr1_random 7888723 7888944 -1267175 - MIR SINE MIR 0 262 31 246 183 211 14 chr1_random 7888971 7889042 -1267077 - MIR3 SINE MIR -37 171 87 344 303 18 9 chr1_random 7889412 7889521 -1266598 - MIR SINE MIR -116 146 37 181 333 42 25 chr1_random 7889994 7890114 -1266005 + MIR3 SINE MIR 33 154 -54 183 326 82 41 chr1_random 7890214 7890312 -1265807 - MIR SINE MIR -77 131 30 215 374 71 19 chr1_random 7890457 7890612 -1265507 + L2 LINE L2 2810 2972 -300 279 157 0 0 chr1_random 7890613 7890664 -1265455 + GA-rich Low_complexity Low_complexity 1 51 0 279 328 16 31 chr1_random 7891264 7891392 -1264727 - L2 LINE L2 -1 3312 3187 223 318 176 0 chr1_random 7891389 7891474 -1264645 + MIR SINE MIR 43 142 -66 * 322 238 14 150 chr1_random 7891496 7891643 -1264476 - L2 LINE L2 -25 3247 3121 685 254 49 57 chr1_random 7891752 7891996 -1264123 + MIR SINE MIR 20 261 -1 254 365 77 0 chr1_random 7892732 7892836 -1263283 + L2 LINE L2 3160 3271 -1 219 270 60 30 chr1_random 7892839 7892939 -1263180 + L3 LINE CR1 1100 1202 -375 263 152 22 0 chr1_random 7892991 7893037 -1263082 - MLT2F LTR ERVL 0 663 617 180 152 0 0 chr1_random 7893039 7893072 -1263047 + (ATTG)n Simple_repeat Simple_repeat 3 35 0 23 54 0 0 chr1_random 7893105 7893142 -1262977 + AT_rich Low_complexity Low_complexity 1 37 0 622 187 0 0 chr1_random 7893266 7893373 -1262746 - MLT1E3 LTR MaLR -472 152 46 507 248 0 8 chr1_random 7893378 7893499 -1262620 - MLT2F LTR ERVL -523 140 21 226 313 89 18 chr1_random 7893562 7893674 -1262445 + L3 LINE CR1 1270 1389 -188 1249 213 211 47 chr1_random 7894271 7894779 -1261340 - MLT1G1 LTR MaLR 0 595 5 242 311 113 9 chr1_random 7895089 7895195 -1260924 + MER5A DNA MER1_type 22 138 -51 770 293 28 16 chr1_random 7896034 7896287 -1259832 - MIR SINE MIR 0 262 7 2331 109 0 0 chr1_random 7896317 7896619 -1259500 + AluSx SINE Alu 1 302 -10 13139 74 7 15 chr1_random 7897332 7899049 -1257070 + L1P3 LINE L1 3620 5335 -819 2302 97 0 3 chr1_random 7899049 7899348 -1256771 - AluY SINE Alu -9 302 5 13139 74 7 15 chr1_random 7899348 7899635 -1256484 + L1P3 LINE L1 5335 5623 -531 586 142 9 35 chr1_random 7899839 7899952 -1256167 + L1MA8 LINE L1 6179 6288 -3 198 71 0 0 chr1_random 7901990 7902018 -1254101 + (TC)n Simple_repeat Simple_repeat 2 29 0 292 234 39 26 chr1_random 7903272 7903349 -1252770 - MLT1K LTR MaLR -2 586 509 2073 161 40 11 chr1_random 7904188 7904542 -1251577 - MLT1A1 LTR MaLR -1 364 1 307 281 92 56 chr1_random 7904957 7905153 -1250966 + MIR SINE MIR 20 222 -40 243 313 60 0 chr1_random 7905245 7905312 -1250807 + MIR SINE MIR 19 89 -173 * 451 217 16 85 chr1_random 7905310 7905439 -1250680 - L2 LINE L2 -4 3309 3190 512 335 7 13 chr1_random 7905597 7905749 -1250370 + MIR3 SINE MIR 20 170 -38 494 287 102 0 chr1_random 7905858 7906074 -1250045 - MIR SINE MIR -4 258 21 508 290 165 0 chr1_random 7906713 7906889 -1249230 - MIR SINE MIR -21 241 37 186 368 0 0 chr1_random 7907506 7907574 -1248545 + MIR SINE MIR 36 103 -105 438 250 55 33 chr1_random 7908031 7908196 -1247923 + MIR SINE MIR 42 206 -56 354 191 0 0 chr1_random 7908207 7908275 -1247844 + L1MC5 LINE L1 7712 7779 -182 6734 89 0 7 chr1_random 7908316 7909356 -1246763 - L1PA13 LINE L1 -1 6162 5120 4176 171 7 5 chr1_random 7909363 7910119 -1246000 + L1PA13 LINE L1 4379 5135 -1011 3114 184 48 3 chr1_random 7910110 7911136 -1244983 + L1MB7 LINE L1 4847 5913 -271 * 3969 79 0 2 chr1_random 7911136 7911611 -1244508 + L1PA8 LINE L1 5681 6171 -1 1525 172 46 14 chr1_random 7911611 7911893 -1244226 + L1MB8 LINE L1 5879 6172 -6 425 213 43 28 chr1_random 7911929 7912070 -1244049 + L1MC5 LINE L1 7794 7936 -25 218 273 57 11 chr1_random 7912193 7912281 -1243838 - L3b LINE CR1 -206 1377 1286 414 271 8 17 chr1_random 7912718 7912836 -1243283 + MLT1L LTR MaLR 124 240 -375 368 265 10 10 chr1_random 7913076 7913178 -1242941 + MLT1L LTR MaLR 471 572 -43 242 274 24 24 chr1_random 7913228 7913312 -1242807 + MIR SINE MIR 30 113 -95 886 201 46 0 chr1_random 7913326 7913500 -1242619 - MER5A DNA MER1_type -7 182 1 388 278 56 14 chr1_random 7913502 7913646 -1242473 + MIR SINE MIR 113 262 0 525 271 72 28 chr1_random 7914342 7914532 -1241587 - MIR SINE MIR -12 250 55 216 323 77 58 chr1_random 7914559 7914714 -1241405 - MIR SINE MIR -58 204 47 413 215 25 58 chr1_random 7915053 7915174 -1240945 - MIR SINE MIR -75 187 71 321 259 241 0 chr1_random 7915273 7915385 -1240734 + MIR SINE MIR 86 224 -38 246 32 0 0 chr1_random 7915413 7915444 -1240675 + (TG)n Simple_repeat Simple_repeat 2 32 0 1388 203 121 22 chr1_random 7915564 7915928 -1240191 - L1ME3A LINE L1 -6 6164 5765 281 282 29 38 chr1_random 7915950 7916098 -1240021 - MIR SINE MIR -62 146 34 387 330 39 69 chr1_random 7916493 7916726 -1239393 - L2 LINE L2 -64 3208 2983 543 267 27 33 chr1_random 7916757 7916907 -1239212 - MER5B DNA MER1_type -16 162 14 4178 161 23 46 chr1_random 7917145 7917889 -1238230 - L1MB3 LINE L1 -2 6181 5422 1883 114 0 8 chr1_random 7917889 7918143 -1237976 - AluSc SINE Alu -57 252 1 4178 161 23 46 chr1_random 7918143 7918168 -1237951 - L1MB3 LINE L1 -761 5422 5398 227 53 0 26 chr1_random 7918168 7918206 -1237913 + (TTGG)n Simple_repeat Simple_repeat 4 40 0 4178 161 23 46 chr1_random 7918206 7918918 -1237201 - L1MB3 LINE L1 -785 5398 4762 826 168 37 12 chr1_random 7918928 7919089 -1237030 - FRAM SINE Alu -9 167 3 3538 200 25 26 chr1_random 7919095 7919895 -1236224 - L1MB3 LINE L1 -1378 4768 3970 440 355 59 10 chr1_random 7919901 7920191 -1235928 - L2 LINE L2 -594 2720 2417 2297 95 6 13 chr1_random 7920560 7920875 -1235244 + AluSp SINE Alu 1 313 0 218 260 301 50 chr1_random 7921679 7921898 -1234221 + L2 LINE L2 2999 3272 0 2769 168 17 11 chr1_random 7921989 7922453 -1233666 - MLT1C LTR MaLR 0 467 1 263 306 51 31 chr1_random 7922573 7922671 -1233448 + MIR3 SINE MIR 94 193 -15 1337 148 56 18 chr1_random 7923253 7923678 -1232441 - LTR54 LTR ERV1 0 510 3 413 293 132 0 chr1_random 7923910 7924084 -1232035 + MIR SINE MIR 60 256 -6 180 197 49 66 chr1_random 7924104 7924165 -1231954 + L2 LINE L2 3214 3273 -40 2584 233 15 6 chr1_random 7924602 7925139 -1230980 + MLT1F LTR MaLR 1 542 0 1598 241 83 40 chr1_random 7925280 7925861 -1230258 + L1ME3A LINE L1 5560 6165 -5 319 336 51 30 chr1_random 7926027 7926262 -1229857 - MIR SINE MIR -3 259 20 208 93 70 0 chr1_random 7926351 7926394 -1229725 + (TATG)n Simple_repeat Simple_repeat 3 48 0 569 262 142 40 chr1_random 7926700 7927074 -1229045 + MLT1J LTR MaLR 50 461 -50 540 211 0 26 chr1_random 7927733 7927847 -1228272 - MIR SINE MIR -81 181 71 180 342 0 13 chr1_random 7927841 7927917 -1228202 + MIR SINE MIR 185 259 -3 * 810 262 9 31 chr1_random 7928077 7928120 -1227999 - MIR SINE MIR -32 230 188 2541 214 74 22 chr1_random 7928120 7928703 -1227416 - MER90 LTR ERV1 -1 613 1 810 262 9 31 chr1_random 7928703 7928888 -1227231 - MIR SINE MIR -74 188 7 348 290 89 8 chr1_random 7929395 7929519 -1226600 + MIR SINE MIR 70 203 -59 549 323 82 26 chr1_random 7929766 7929998 -1226121 + MIR SINE MIR 12 256 -6 687 260 35 0 chr1_random 7930424 7930593 -1225526 - MIR SINE MIR -74 188 14 414 248 149 37 chr1_random 7931703 7931864 -1224255 + MER5A DNA MER1_type 9 187 -2 2947 161 6 12 chr1_random 7932478 7932976 -1223143 + L1MB2 LINE L1 5670 6164 -7 180 286 18 0 chr1_random 7932998 7933054 -1223065 + MIR SINE MIR 90 146 -116 320 315 149 14 chr1_random 7933212 7933488 -1222631 + L2 LINE L2 2048 2360 -954 592 317 12 44 chr1_random 7933503 7933752 -1222367 - MLT1I LTR MaLR -71 338 98 240 226 0 65 chr1_random 7934542 7934635 -1221484 + LTR67 LTR ERVL 458 544 -13 241 170 0 38 chr1_random 7934635 7934688 -1221431 + MIR SINE MIR 92 142 -66 358 316 0 29 chr1_random 7934880 7935016 -1221103 - MIR SINE MIR -31 231 100 1217 136 0 0 chr1_random 7935028 7935204 -1220915 + AluSg/x SINE Alu 129 304 -8 259 364 10 0 chr1_random 7935812 7935911 -1220208 - MIR SINE MIR -64 144 45 2487 216 78 9 chr1_random 7935962 7936489 -1219630 - MLT1F1 LTR MaLR -4 563 1 347 288 75 44 chr1_random 7936535 7936761 -1219358 + L2 LINE L2 2726 2958 -356 319 276 0 67 chr1_random 7936932 7937037 -1219082 + L2 LINE L2 3216 3313 0 287 349 40 46 chr1_random 7937012 7937164 -1218955 + L3 LINE CR1 1400 1550 -27 * 294 29 0 0 chr1_random 7937890 7937925 -1218194 + (CA)n Simple_repeat Simple_repeat 1 35 0 383 165 10 29 chr1_random 7938019 7938122 -1217997 + CT-rich Low_complexity Low_complexity 1 101 0 196 152 0 0 chr1_random 7938364 7938397 -1217722 - MIR SINE MIR -71 137 105 2020 138 14 0 chr1_random 7938724 7939021 -1217098 + AluSx SINE Alu 1 301 -11 736 294 57 17 chr1_random 7939088 7939387 -1216732 - L3 LINE CR1 -73 1504 1194 553 350 16 0 chr1_random 7939462 7939656 -1216463 + MIR SINE MIR 56 252 -10 2420 66 0 10 chr1_random 7939810 7940114 -1216005 - AluSg SINE Alu -9 301 1 1275 140 16 0 chr1_random 7940148 7940334 -1215785 - MER5A DNA MER1_type 0 189 1 333 335 57 5 chr1_random 7940384 7940578 -1215541 - MIR SINE MIR -40 222 19 479 273 31 8 chr1_random 7940578 7940706 -1215413 - MIR SINE MIR -115 147 17 258 234 159 55 chr1_random 7941273 7941418 -1214701 + MIR SINE MIR 4 163 -99 217 319 133 42 chr1_random 7941543 7941709 -1214410 + L2 LINE L2 2910 3090 -182 258 304 82 22 chr1_random 7942267 7942402 -1213717 - L2 LINE L2 -319 2953 2811 255 311 76 45 chr1_random 7942955 7943087 -1213032 + MIR SINE MIR 16 151 -111 842 221 96 29 chr1_random 7943117 7943450 -1212669 - MLT1F LTR MaLR 0 555 247 339 324 96 7 chr1_random 7943553 7943689 -1212430 - MIR SINE MIR -13 249 102 196 296 70 0 chr1_random 7943910 7943981 -1212138 - MIR3 SINE MIR -52 156 81 314 280 76 38 chr1_random 7944075 7944207 -1211912 + MIR SINE MIR 5 141 -121 2711 45 0 0 chr1_random 7944222 7944532 -1211587 - AluY SINE Alu -1 310 1 1345 173 53 16 chr1_random 7944724 7945044 -1211075 + MER33 DNA MER1_type 1 323 -1 287 118 78 0 chr1_random 7945050 7945101 -1211018 + L2 LINE L2 3259 3313 0 22 0 0 0 chr1_random 7945364 7945386 -1210733 + AT_rich Low_complexity Low_complexity 1 22 0 420 212 288 0 chr1_random 7946076 7946222 -1209897 - MER5A DNA MER1_type -1 188 1 203 196 0 59 chr1_random 7946600 7946651 -1209468 - L2 LINE L2 -1 3271 3224 1090 239 59 38 chr1_random 7946751 7947231 -1208888 - L2 LINE L2 -43 3270 2766 1422 183 39 0 chr1_random 7947559 7947871 -1208248 - MER33 DNA MER1_type 0 324 1 195 289 133 12 chr1_random 7947889 7947972 -1208147 + L2 LINE L2 2967 3059 -213 310 238 48 12 chr1_random 7947989 7948073 -1208046 + MIR SINE MIR 176 262 0 260 315 49 70 chr1_random 7948127 7948270 -1207849 + L2 LINE L2 3133 3272 0 518 313 7 7 chr1_random 7948452 7948596 -1207523 + MIR SINE MIR 1 144 -118 273 57 0 0 chr1_random 7948717 7948752 -1207367 + (TG)n Simple_repeat Simple_repeat 2 36 0 315 356 17 46 chr1_random 7949140 7949314 -1206805 + HAL1 LINE L1 1766 1934 -573 1006 163 62 0 chr1_random 7951006 7951184 -1204935 - MER5A DNA MER1_type 0 189 1 492 267 249 14 chr1_random 7951452 7951657 -1204462 + MIR SINE MIR 5 252 -10 341 395 51 17 chr1_random 7951681 7951872 -1204247 + L2 LINE L2 2511 2721 -593 1651 172 78 59 chr1_random 7951872 7952225 -1203894 + MSTB1 LTR MaLR 1 366 -66 2068 55 0 20 chr1_random 7952225 7952522 -1203597 - AluY SINE Alu 0 324 33 1651 172 78 59 chr1_random 7952522 7952591 -1203528 + MSTB1 LTR MaLR 366 432 0 341 395 51 17 chr1_random 7952591 7952751 -1203368 + L2 LINE L2 2721 2874 -440 2426 69 0 3 chr1_random 7953678 7953981 -1202138 + AluY SINE Alu 1 302 -9 403 343 34 42 chr1_random 7954458 7954697 -1201422 + MIR SINE MIR 25 261 -1 1062 146 0 0 chr1_random 7954779 7954930 -1201189 + FRAM SINE Alu 1 151 -15 189 0 0 0 chr1_random 7956224 7956245 -1199874 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 2084 100 0 108 chr1_random 7956459 7956810 -1199309 + AluSq SINE Alu 1 313 0 361 321 24 86 chr1_random 7956918 7957127 -1198992 - MIR SINE MIR -46 216 21 1523 233 48 10 chr1_random 7957231 7957630 -1198489 + L1ME LINE L1 5290 5703 -463 1391 216 16 7 chr1_random 7957788 7958093 -1198026 + MSTB LTR MaLR 115 422 -4 301 264 80 48 chr1_random 7958095 7958220 -1197899 + L1MC2 LINE L1 4844 4972 -1174 2125 176 25 37 chr1_random 7958222 7958655 -1197464 + MSTC LTR MaLR 1 428 0 2431 280 126 52 chr1_random 7958682 7960180 -1195939 + MSTC-int LTR MaLR 43 1651 0 1331 155 42 6 chr1_random 7960181 7960510 -1195609 + MSTC LTR MaLR 2 428 0 3541 222 16 13 chr1_random 7960518 7961624 -1194495 + L1MC2 LINE L1 4978 6086 -258 526 330 107 14 chr1_random 7962303 7962657 -1193462 + LTR16A LTR ERVL 56 442 -8 666 283 47 9 chr1_random 7962674 7962886 -1193233 + MIR SINE MIR 1 220 -42 319 320 60 0 chr1_random 7962986 7963086 -1193033 + L2 LINE L2 3161 3266 -6 307 207 281 0 chr1_random 7963089 7963171 -1192948 - MIR SINE MIR -109 153 49 1182 217 109 57 chr1_random 7963365 7963872 -1192247 - MLT1F1 LTR MaLR 0 567 37 1640 170 170 34 chr1_random 7963872 7964283 -1191836 + MLT1C LTR MaLR 1 467 0 1182 217 109 57 chr1_random 7964283 7964315 -1191804 - MLT1F1 LTR MaLR -530 37 8 1983 196 64 14 chr1_random 7964315 7964755 -1191364 + MLT2B1 LTR ERVL 1 462 -58 352 55 0 0 chr1_random 7964756 7964811 -1191308 + L1PA14 LINE L1 6106 6160 -1 444 123 0 0 chr1_random 7964840 7964913 -1191206 + (CA)n Simple_repeat Simple_repeat 2 74 0 2251 107 51 25 chr1_random 7965120 7965475 -1190644 + THE1B LTR MaLR 1 364 0 461 161 17 25 chr1_random 7966035 7966153 -1189966 + CT-rich Low_complexity Low_complexity 4 120 0 241 116 0 47 chr1_random 7966153 7966196 -1189923 + (TCCC)n Simple_repeat Simple_repeat 3 43 0 998 16 16 0 chr1_random 7966196 7966319 -1189800 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 263 353 169 24 chr1_random 7966339 7966594 -1189525 + L2 LINE L2 2981 3272 0 243 340 126 14 chr1_random 7966754 7966969 -1189150 - L2 LINE L2 -213 3059 2821 245 279 37 134 chr1_random 7967432 7967701 -1188418 + L2 LINE L2 3029 3271 -1 514 291 61 19 chr1_random 7968529 7968958 -1187161 - LTR33 LTR ERVL -13 508 4 647 325 48 8 chr1_random 7969187 7969439 -1186680 + MIR SINE MIR 1 262 0 21 36 0 0 chr1_random 7970424 7970452 -1185667 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr1_random 7972930 7972958 -1183161 + AT_rich Low_complexity Low_complexity 1 28 0 201 203 34 0 chr1_random 7973065 7973124 -1182995 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 24 0 0 0 chr1_random 7973395 7973419 -1182700 + AT_rich Low_complexity Low_complexity 1 24 0 279 242 0 0 chr1_random 7973562 7973624 -1182495 - L1M4 LINE L1 -1038 5108 5047 251 213 0 0 chr1_random 7973644 7973691 -1182428 - L1M4 LINE L1 -2300 3846 3800 561 265 82 5 chr1_random 7973702 7973921 -1182198 - L1M4 LINE L1 -2389 3757 3522 297 0 0 0 chr1_random 7975231 7975264 -1180855 + (T)n Simple_repeat Simple_repeat 1 33 0 275 253 40 27 chr1_random 7975331 7975406 -1180713 - MSTD LTR MaLR -198 198 123 * 1203 127 0 0 chr1_random 7975379 7975560 -1180559 - MSTC LTR MaLR -247 181 1 22 0 0 0 chr1_random 7975817 7975839 -1180280 + AT_rich Low_complexity Low_complexity 1 22 0 3681 227 19 9 chr1_random 7976123 7976982 -1179137 - MSTA-int LTR MaLR -783 868 2 2456 150 26 7 chr1_random 7976983 7977403 -1178716 - MSTA LTR MaLR 0 428 1 1817 229 17 20 chr1_random 7977403 7977810 -1178309 + L1MA4A LINE L1 486 891 -6674 252 235 0 0 chr1_random 7977993 7978044 -1178075 + ERVL LTR ERVL 4623 4673 -1091 234 246 82 25 chr1_random 7979016 7979138 -1176981 + L1ME4a LINE L1 5960 6088 -33 21 36 0 0 chr1_random 7979349 7979377 -1176742 + AT_rich Low_complexity Low_complexity 1 28 0 338 147 15 0 chr1_random 7979628 7979696 -1176423 + (TA)n Simple_repeat Simple_repeat 1 69 0 22 0 0 0 chr1_random 7979771 7979793 -1176326 + AT_rich Low_complexity Low_complexity 1 22 0 6811 16 0 0 chr1_random 7980854 7981629 -1174490 + L1PA2 LINE L1 5377 6151 -4 619 249 62 9 chr1_random 7982896 7983217 -1172902 + L1MC/D LINE L1 5127 5468 -743 1719 258 19 48 chr1_random 7983232 7983748 -1172371 + MLT2B3 LTR ERVL 1 501 -53 277 236 21 14 chr1_random 7983753 7983893 -1172226 + (TA)n Simple_repeat Simple_repeat 1 141 0 677 161 46 0 chr1_random 7983932 7984062 -1172057 + MSTA LTR MaLR 3 138 -290 1664 229 0 3 chr1_random 7984062 7984428 -1171691 + HERVL-B3 LTR ERVL 40 404 -5250 608 203 0 15 chr1_random 7984442 7984575 -1171544 + MST-int LTR MaLR 1501 1631 -20 23 33 0 0 chr1_random 7985366 7985396 -1170723 + AT_rich Low_complexity Low_complexity 1 30 0 4096 212 90 3 chr1_random 7986091 7987291 -1168828 + L1MA4A LINE L1 3783 5086 -2479 279 201 56 56 chr1_random 7987312 7987456 -1168663 + L1MA4A LINE L1 5724 5867 -1698 4454 180 20 36 chr1_random 7987557 7988337 -1167782 + L1MA4A LINE L1 6149 6940 -782 246 32 0 0 chr1_random 7988337 7988368 -1167751 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4454 180 20 36 chr1_random 7988368 7989061 -1167058 + L1MA4A LINE L1 6940 7606 -116 1636 177 26 35 chr1_random 7989061 7989371 -1166748 + AluJo SINE Alu 1 307 -5 4454 180 20 36 chr1_random 7989371 7989482 -1166637 + L1MA4A LINE L1 7606 7717 -5 602 229 0 8 chr1_random 7990701 7990823 -1165296 + Tigger2 DNA MER2_type 2598 2718 0 940 323 97 46 chr1_random 7990877 7991773 -1164346 + L2 LINE L2 1473 2414 -900 215 128 26 0 chr1_random 8193441 8193480 -962639 - L2 LINE L2 -17 3255 3216 * 613 275 52 26 chr1_random 8193448 8193641 -962478 - MIR SINE MIR -19 243 46 329 336 55 8 chr1_random 8195176 8195304 -960815 - L2 LINE L2 0 3272 3139 2139 110 0 16 chr1_random 8195541 8195858 -960261 - AluSx SINE Alu 0 312 1 255 274 14 14 chr1_random 8195983 8196056 -960063 + MER113 DNA MER1_type? 445 517 -4 313 320 16 58 chr1_random 8196173 8196386 -959733 + MIR SINE MIR 15 217 -45 775 283 0 11 chr1_random 8196484 8196671 -959448 + MIR SINE MIR 10 194 -68 1951 134 0 0 chr1_random 8198592 8198884 -957235 - AluSx SINE Alu -20 292 1 2133 112 0 7 chr1_random 8198895 8199199 -956920 - AluSx SINE Alu -9 303 2 423 0 0 0 chr1_random 8200369 8200416 -955703 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 80 20 0 chr1_random 8200676 8200726 -955393 + (TC)n Simple_repeat Simple_repeat 2 52 0 291 362 8 8 chr1_random 8201890 8202017 -954102 + MIR3 SINE MIR 34 160 -48 192 392 63 13 chr1_random 8202301 8202459 -953660 - L3b LINE CR1 -119 1464 1299 21 0 0 0 chr1_random 8202599 8202620 -953499 + AT_rich Low_complexity Low_complexity 1 21 0 189 167 21 83 chr1_random 8202798 8202846 -953273 - L2 LINE L2 -5 3308 3264 26 0 0 0 chr1_random 8203854 8203880 -952239 + AT_rich Low_complexity Low_complexity 1 26 0 1841 118 13 57 chr1_random 8205256 8205571 -950548 - AluJb SINE Alu -11 301 1 258 208 38 0 chr1_random 8205680 8205733 -950386 + L3 LINE CR1 1510 1564 -13 1893 116 0 0 chr1_random 8205865 8206132 -949987 + AluSq SINE Alu 15 281 -32 198 71 0 0 chr1_random 8206134 8206162 -949957 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 5946 137 19 29 chr1_random 8206719 8207000 -949119 - L1MA4 LINE L1 -6 6294 6012 228 35 0 0 chr1_random 8207000 8207029 -949090 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2024 116 0 0 chr1_random 8207029 8207313 -948806 - AluSx SINE Alu -28 284 1 1782 120 4 4 chr1_random 8207322 8207581 -948538 - AluSq SINE Alu -10 303 45 5946 137 19 29 chr1_random 8207581 8208658 -947461 - L1MA4 LINE L1 -295 6005 4940 1569 167 31 7 chr1_random 8209305 8209593 -946526 + AluJo SINE Alu 1 295 -17 22 25 0 25 chr1_random 8209593 8209613 -946506 + AT_rich Low_complexity Low_complexity 1 20 -19 2192 99 0 16 chr1_random 8209613 8209927 -946192 + AluY SINE Alu 1 309 -2 22 25 0 25 chr1_random 8209927 8209946 -946173 + AT_rich Low_complexity Low_complexity 20 39 0 724 261 50 54 chr1_random 8210010 8210136 -945983 + MIR SINE MIR 2 127 -135 1588 176 52 0 chr1_random 8210136 8210426 -945693 - AluSx SINE Alu -7 305 1 724 261 50 54 chr1_random 8210426 8210559 -945560 + MIR SINE MIR 127 260 -2 203 368 64 9 chr1_random 8210597 8210714 -945405 - MIR3 SINE MIR -49 159 36 189 349 87 40 chr1_random 8210826 8210952 -945167 - L2 LINE L2 -9 3304 3173 286 318 200 19 chr1_random 8210986 8211517 -944602 - L2 LINE L2 -339 2975 2253 907 262 216 14 chr1_random 8213100 8213693 -942426 - L2 LINE L2 -83 3230 2535 1914 210 43 10 chr1_random 8213758 8214154 -941965 + L1MC4a LINE L1 5497 5905 -1903 2192 185 67 0 chr1_random 8214168 8214557 -941562 - MER47B DNA MER2_type 0 418 4 1950 184 96 19 chr1_random 8214584 8214832 -941287 + L1MC4a LINE L1 5913 6141 -1667 1888 143 16 7 chr1_random 8214832 8215139 -940980 + AluSx SINE Alu 1 310 -2 1950 184 96 19 chr1_random 8215139 8215411 -940708 + L1MC4a LINE L1 6141 6473 -1335 187 161 0 0 chr1_random 8215425 8215456 -940663 + L2 LINE L2 3271 3301 -12 237 182 169 26 chr1_random 8215611 8215688 -940431 - MIR SINE MIR -56 206 119 263 337 63 46 chr1_random 8217129 8217304 -938815 + MIR SINE MIR 34 211 -51 183 161 32 0 chr1_random 8217437 8217468 -938651 + L2 LINE L2 3249 3280 -33 944 121 264 0 chr1_random 8217491 8217673 -938446 - MER30 DNA MER1_type 0 230 1 1312 180 19 15 chr1_random 8217824 8218085 -938034 - AluJo SINE Alu -9 303 42 627 317 67 48 chr1_random 8221633 8221964 -934155 - L2 LINE L2 0 3313 2977 2210 88 3 0 chr1_random 8222024 8222319 -933800 - AluSc SINE Alu -12 297 2 333 286 103 69 chr1_random 8222319 8222515 -933604 - L2 LINE L2 -587 2727 2522 447 337 177 13 chr1_random 8222648 8223037 -933082 - L2 LINE L2 -722 2592 2140 966 272 122 43 chr1_random 8223226 8223730 -932389 + Charlie8 DNA MER1_type 1 532 -1885 313 140 35 18 chr1_random 8224653 8224710 -931409 - MLT1E LTR MaLR -66 527 470 1893 122 38 0 chr1_random 8225365 8225653 -930466 + AluSx SINE Alu 1 299 -13 198 143 0 0 chr1_random 8228167 8228202 -927917 + L3b LINE CR1 1359 1393 -190 195 305 143 10 chr1_random 8228411 8228509 -927610 - MIR SINE MIR -66 142 44 235 304 78 29 chr1_random 8228837 8228939 -927180 - MIR SINE MIR -148 114 8 200 294 56 33 chr1_random 8229264 8229444 -926675 + L2 LINE L2 2870 3053 -219 207 292 77 0 chr1_random 8229521 8229586 -926533 + L2 LINE L2 3191 3260 -12 384 244 35 17 chr1_random 8229716 8229831 -926288 - MLT1I LTR MaLR -48 361 245 822 117 0 104 chr1_random 8229979 8230133 -925986 + AluY SINE Alu 1 138 -173 1807 118 0 57 chr1_random 8230135 8230431 -925688 + AluSg SINE Alu 13 291 -19 1652 189 0 16 chr1_random 8232972 8233289 -922830 + AluJb SINE Alu 1 312 0 363 60 0 0 chr1_random 8233571 8233621 -922498 + (CA)n Simple_repeat Simple_repeat 2 51 0 249 148 0 56 chr1_random 8234016 8234070 -922049 + MIR SINE MIR 80 130 -132 2409 78 0 0 chr1_random 8234690 8234996 -921123 + AluSg1 SINE Alu 1 306 -3 408 286 131 8 chr1_random 8236096 8236355 -919764 + L1ME4a LINE L1 5629 5919 -202 * 1907 125 115 33 chr1_random 8236139 8236461 -919658 + L1MB3 LINE L1 5685 6048 -135 2033 136 0 7 chr1_random 8236461 8236762 -919357 + AluSx SINE Alu 1 299 -13 1907 125 115 33 chr1_random 8236762 8236838 -919281 + L1MB3 LINE L1 6048 6116 -67 183 267 200 11 chr1_random 8238073 8238163 -917956 - MIR SINE MIR -82 126 20 180 256 33 91 chr1_random 8240209 8240330 -915789 + MIR SINE MIR 32 145 -63 2726 19 0 0 chr1_random 8242735 8243045 -913074 - AluYa5 SINE Alu -1 310 1 383 266 92 23 chr1_random 8243575 8243748 -912371 + MIR3 SINE MIR 6 190 -18 561 251 12 13 chr1_random 8244140 8244302 -911817 - MIR SINE MIR -60 148 32 252 367 37 0 chr1_random 8244385 8244494 -911625 - L2 LINE L2 -9 3263 3151 242 255 165 25 chr1_random 8244588 8244788 -911331 - L1ME4a LINE L1 -12 6109 5882 25 31 0 0 chr1_random 8244890 8244922 -911197 + AT_rich Low_complexity Low_complexity 1 32 0 1355 178 130 15 chr1_random 8244922 8245062 -911057 - AluJo SINE Alu -2 300 178 558 0 0 0 chr1_random 8245062 8245124 -910995 + (TATTG)n Simple_repeat Simple_repeat 2 63 0 1355 178 130 15 chr1_random 8245124 8245252 -910867 - AluJo SINE Alu -124 178 1 303 251 134 41 chr1_random 8245495 8245666 -910453 - L1MC5 LINE L1 -770 7191 7005 274 341 8 8 chr1_random 8245689 8245812 -910307 - L1MC4 LINE L1 -981 7061 6939 374 304 108 28 chr1_random 8246562 8246776 -909343 - MIR SINE MIR -25 237 7 948 238 108 19 chr1_random 8246970 8247277 -908842 + MER46C DNA MER2_type 5 338 0 960 159 66 18 chr1_random 8249734 8249961 -906158 - Charlie5 DNA MER1_type 0 2621 2384 776 160 32 0 chr1_random 8250020 8250145 -905974 - AluJb SINE Alu -27 285 157 257 133 53 0 chr1_random 8250180 8250255 -905864 + (TA)n Simple_repeat Simple_repeat 1 79 0 291 54 0 0 chr1_random 8250297 8250334 -905785 + (TG)n Simple_repeat Simple_repeat 2 38 0 222 329 0 14 chr1_random 8250455 8250525 -905594 - MIR SINE MIR -174 88 20 381 244 16 79 chr1_random 8250859 8250986 -905133 - MER5B DNA MER1_type -50 128 10 2001 139 3 3 chr1_random 8251929 8252239 -903880 + AluSq SINE Alu 1 310 -3 202 363 39 0 chr1_random 8252731 8252833 -903286 - MIR SINE MIR -70 192 87 2261 116 0 0 chr1_random 8253023 8253334 -902785 - AluSx SINE Alu -1 311 1 180 0 0 0 chr1_random 8253417 8253437 -902682 + (A)n Simple_repeat Simple_repeat 1 20 0 543 307 35 38 chr1_random 8253637 8253862 -902257 + MIR SINE MIR 37 259 -3 203 339 94 8 chr1_random 8254001 8254128 -901991 - L3b LINE CR1 -106 1477 1340 599 264 110 0 chr1_random 8254236 8254391 -901728 - MER5B DNA MER1_type -6 172 1 1662 136 3 107 chr1_random 8256541 8256887 -899232 - AluJo SINE Alu 0 312 3 323 294 43 125 chr1_random 8257106 8257474 -898645 - L2 LINE L2 -3 3269 2932 223 303 145 21 chr1_random 8257539 8257684 -898435 - L2 LINE L2 -485 2829 2667 2167 72 4 0 chr1_random 8257736 8258038 -898081 - AluSp SINE Alu 0 309 7 427 276 39 8 chr1_random 8258426 8258553 -897566 + MER5A DNA MER1_type 59 189 0 2121 115 0 10 chr1_random 8258829 8259141 -896978 - AluSc SINE Alu 0 309 1 1891 110 11 7 chr1_random 8259147 8259478 -896641 - AluSx SINE Alu 0 332 1 190 132 38 19 chr1_random 8259707 8259760 -896359 + GA-rich Low_complexity Low_complexity 1 54 0 378 0 0 0 chr1_random 8260070 8260112 -896007 + (CA)n Simple_repeat Simple_repeat 2 43 0 458 260 136 19 chr1_random 8261041 8261195 -894924 + MIR SINE MIR 81 252 -10 198 291 222 8 chr1_random 8261510 8261627 -894492 + MER5A DNA MER1_type 7 148 -41 1006 290 109 0 chr1_random 8261651 8261999 -894120 + L2 LINE L2 2928 3313 0 566 228 37 22 chr1_random 8262027 8262163 -893956 + MLT1I LTR MaLR 6 143 -266 489 277 51 0 chr1_random 8262244 8262381 -893738 + MLT1I LTR MaLR 266 409 0 297 0 0 0 chr1_random 8262978 8263011 -893108 + (TG)n Simple_repeat Simple_repeat 1 33 0 884 204 55 11 chr1_random 8264024 8264205 -891914 + MER5A DNA MER1_type 1 189 0 192 252 39 87 chr1_random 8264717 8264820 -891299 - MIR3 SINE MIR -2 206 109 591 190 26 0 chr1_random 8264904 8265020 -891099 - MER45A DNA AcHobo 0 178 60 324 48 0 0 chr1_random 8266754 8266796 -889323 + (CA)n Simple_repeat Simple_repeat 1 42 0 678 257 75 42 chr1_random 8268707 8268948 -887171 + MIR SINE MIR 13 261 -1 202 258 76 0 chr1_random 8269205 8269271 -886848 + L2 LINE L2 3201 3271 -1 320 302 0 10 chr1_random 8273415 8273511 -882608 - MIR SINE MIR -65 143 49 2110 105 0 3 chr1_random 8274894 8275188 -880931 - AluY SINE Alu -18 293 1 1990 133 17 13 chr1_random 8275623 8275925 -880194 + AluJo SINE Alu 2 304 -8 190 277 0 31 chr1_random 8277709 8277774 -878345 - MIR SINE MIR -130 78 16 2296 101 7 0 chr1_random 8278758 8279064 -877055 + AluSx SINE Alu 3 310 -2 508 282 107 10 chr1_random 8279064 8279259 -876860 + MIR SINE MIR 24 241 -21 486 296 81 31 chr1_random 8281229 8281452 -874667 + HAL1b LINE L1 572 805 -543 2178 118 3 0 chr1_random 8281454 8281741 -874378 + AluSx SINE Alu 3 290 -22 426 61 108 0 chr1_random 8281745 8281982 -874137 + (TA)n Simple_repeat Simple_repeat 1 262 0 299 143 0 0 chr1_random 8281982 8282024 -874095 + Alu SINE Alu 244 285 -16 315 223 98 60 chr1_random 8282034 8282218 -873901 + L1MC5 LINE L1 7567 7757 -204 202 75 106 11 chr1_random 8282222 8282316 -873803 + (TA)n Simple_repeat Simple_repeat 1 103 0 362 110 78 32 chr1_random 8282338 8282908 -873211 + (TA)n Simple_repeat Simple_repeat 1 596 0 366 82 0 0 chr1_random 8282910 8282959 -873160 - Alu SINE Alu -9 291 243 25 31 0 0 chr1_random 8282965 8282997 -873122 + AT_rich Low_complexity Low_complexity 1 32 0 300 191 153 38 chr1_random 8283000 8283131 -872988 + L1MCa LINE L1 1918 2063 -4363 267 252 131 9 chr1_random 8283140 8283247 -872872 + HAL1b LINE L1 810 929 -419 285 128 0 0 chr1_random 8283276 8283323 -872796 + (CA)n Simple_repeat Simple_repeat 2 48 0 1489 175 0 65 chr1_random 8283840 8284038 -872081 - AluJo SINE Alu -14 298 126 216 0 0 0 chr1_random 8284038 8284062 -872057 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1489 175 0 65 chr1_random 8284062 8284171 -871948 - AluJo SINE Alu -186 126 11 216 0 0 0 chr1_random 8284699 8284723 -871396 + (TG)n Simple_repeat Simple_repeat 2 25 0 539 279 41 78 chr1_random 8285305 8285549 -870570 - MIR SINE MIR 0 262 28 208 352 45 23 chr1_random 8286333 8286421 -869698 + MIR SINE MIR 59 148 -114 1188 135 19 9 chr1_random 8286426 8286641 -869478 + L1MC1 LINE L1 5653 5869 -464 2907 141 16 20 chr1_random 8286678 8287174 -868945 + L1MC1 LINE L1 5840 6333 0 1033 123 0 0 chr1_random 8287185 8287323 -868796 + AluJb SINE Alu 1 138 -174 1042 160 77 0 chr1_random 8288191 8288372 -867747 + AluJb SINE Alu 116 310 -2 272 292 167 16 chr1_random 8288597 8288902 -867217 - L1ME4a LINE L1 -82 6039 5689 511 245 119 13 chr1_random 8289426 8289585 -866534 - MIR SINE MIR 0 262 87 2073 80 3 55 chr1_random 8290208 8290497 -865622 + AluY SINE Alu 25 298 -13 556 265 63 21 chr1_random 8290722 8290911 -865208 - MIR SINE MIR -46 216 20 1550 210 101 37 chr1_random 8291845 8291902 -864217 + MLT1C LTR MaLR 1 53 -414 1884 181 3 0 chr1_random 8291902 8292201 -863918 + AluJo SINE Alu 1 300 -12 1550 210 101 37 chr1_random 8292201 8292571 -863548 + MLT1C LTR MaLR 53 455 -12 1652 155 99 0 chr1_random 8293377 8293661 -862458 + AluJb SINE Alu 1 312 0 431 18 18 0 chr1_random 8294112 8294168 -861951 + (TG)n Simple_repeat Simple_repeat 1 57 0 387 254 154 47 chr1_random 8295525 8295694 -860425 + MIR3 SINE MIR 18 204 -4 199 252 18 9 chr1_random 8295923 8295934 -860185 - MIR SINE MIR -66 142 133 1357 160 26 4 chr1_random 8295934 8296165 -859954 - MER46A DNA MER2_type 0 236 1 199 252 18 9 chr1_random 8296165 8296218 -859901 - MIR SINE MIR -75 133 89 290 250 44 0 chr1_random 8296283 8296351 -859768 + MIR SINE MIR 86 156 -106 525 327 50 64 chr1_random 8297273 8297570 -858549 - L2 LINE L2 -1 3271 2979 414 322 74 13 chr1_random 8297585 8297734 -858385 - L2 LINE L2 -1 3271 3114 958 195 78 10 chr1_random 8298437 8298642 -857477 + MER20 DNA MER1_type 1 219 0 2213 122 0 3 chr1_random 8299323 8299618 -856501 - AluSx SINE Alu -18 294 1 333 205 246 33 chr1_random 8299631 8299753 -856366 - L1ME4a LINE L1 -73 6048 5901 2482 148 44 7 chr1_random 8300589 8301000 -855119 + MSTB LTR MaLR 1 426 0 332 128 23 23 chr1_random 8301128 8301214 -854905 + MER113 DNA MER1_type? 63 148 -373 1735 166 0 36 chr1_random 8301353 8301661 -854458 + AluJo SINE Alu 1 297 -15 321 26 0 0 chr1_random 8301978 8302016 -854103 + (TG)n Simple_repeat Simple_repeat 2 39 0 2105 135 0 0 chr1_random 8302178 8302475 -853644 - AluSc SINE Alu -12 297 1 286 299 7 80 chr1_random 8302511 8302648 -853471 + MIR SINE MIR 18 144 -118 314 284 73 0 chr1_random 8302778 8302887 -853232 + L2 LINE L2 2720 2836 -478 1518 225 36 47 chr1_random 8303621 8303760 -852359 - L1MEc LINE L1 -3556 2659 2520 1653 151 77 14 chr1_random 8303760 8304045 -852074 - AluJo SINE Alu -1 311 9 1518 225 36 47 chr1_random 8304045 8304372 -851747 - L1MEc LINE L1 -3695 2520 2198 587 27 27 0 chr1_random 8304377 8304450 -851669 - AluY SINE Alu -13 299 225 2000 147 10 16 chr1_random 8304519 8304833 -851286 - AluJb SINE Alu 0 312 1 559 203 6 51 chr1_random 8304834 8305011 -851108 - L1MEc LINE L1 -4181 2215 2047 1699 165 113 0 chr1_random 8305013 8305341 -850778 - MER47A DNA MER2_type -1 365 1 3845 263 108 50 chr1_random 8305341 8305411 -850708 - L1MEc LINE L1 -4349 2047 1983 903 127 0 0 chr1_random 8305411 8305529 -850590 + FLAM_C SINE Alu 1 118 -15 3845 263 108 50 chr1_random 8305529 8305654 -850465 - L1MEc LINE L1 -4413 1983 1867 3666 107 25 4 chr1_random 8305654 8306170 -849949 + MER1A DNA MER1_type 1 527 0 3845 263 108 50 chr1_random 8306170 8306608 -849511 - L1MEc LINE L1 -4529 1867 1456 2320 179 34 2 chr1_random 8306608 8307021 -849098 - MSTB LTR MaLR 0 426 1 3845 263 108 50 chr1_random 8307021 8307259 -848860 - L1MEc LINE L1 -4940 1456 1233 2188 118 0 20 chr1_random 8307259 8307588 -848531 - AluSx SINE Alu 0 312 1 3845 263 108 50 chr1_random 8307588 8307918 -848201 - L1MEc LINE L1 -5163 1233 924 775 164 0 0 chr1_random 8307918 8308034 -848085 - FLAM_C SINE Alu -17 116 1 3845 263 108 50 chr1_random 8308034 8308729 -847390 - L1MEc LINE L1 -5472 924 36 190 234 43 0 chr1_random 8308731 8308778 -847341 - MIR SINE MIR -36 226 178 243 209 121 55 chr1_random 8308792 8308883 -847236 + L2 LINE L2 3198 3294 -19 209 250 103 15 chr1_random 8308919 8308987 -847132 + MIR SINE MIR 41 114 -148 286 279 89 0 chr1_random 8309042 8309121 -846998 + L2 LINE L2 3197 3282 -31 339 205 248 31 chr1_random 8311024 8311200 -844919 + MIR SINE MIR 2 205 -57 288 309 43 86 chr1_random 8311237 8311344 -844775 + L2 LINE L2 3139 3240 -32 2398 73 10 0 chr1_random 8311344 8311645 -844474 + AluY SINE Alu 1 304 -7 288 309 43 86 chr1_random 8311645 8311676 -844443 + L2 LINE L2 3240 3271 -1 215 307 70 53 chr1_random 8311752 8311866 -844253 - L2 LINE L2 -589 2725 2610 264 254 17 0 chr1_random 8312275 8312334 -843785 - MIR SINE MIR -119 89 30 205 352 48 16 chr1_random 8312543 8312668 -843451 - L3b LINE CR1 -235 1348 1220 276 196 295 11 chr1_random 8312950 8313076 -843043 + MIR SINE MIR 3 172 -63 212 301 172 0 chr1_random 8314297 8314390 -841729 + MIR SINE MIR 111 219 -43 224 211 0 19 chr1_random 8314837 8314889 -841230 + G-rich Low_complexity Low_complexity 4 54 0 960 197 11 17 chr1_random 8317028 8317206 -838913 - MER5B DNA MER1_type 0 178 2 203 386 23 0 chr1_random 8318754 8318842 -837277 - MIR SINE MIR -89 119 30 425 223 62 15 chr1_random 8319187 8319317 -836802 - MIR3 SINE MIR -62 146 11 2382 86 16 22 chr1_random 8319668 8319983 -836136 - AluSq SINE Alu 0 313 1 2267 71 39 3 chr1_random 8320666 8320948 -835171 + AluY SINE Alu 1 292 -19 843 230 16 11 chr1_random 8321117 8321308 -834811 - MLT1J2 LTR MaLR -258 192 1 444 303 62 11 chr1_random 8321541 8321719 -834400 + MER5A DNA MER1_type 1 187 -2 345 312 46 0 chr1_random 8321809 8321918 -834201 - MIR SINE MIR -79 129 16 203 297 115 33 chr1_random 8322982 8323164 -832955 + L2 LINE L2 2210 2406 -908 246 264 118 14 chr1_random 8325530 8325658 -830461 + MIR3 SINE MIR 33 171 -37 886 222 80 9 chr1_random 8325811 8326036 -830083 - MIR SINE MIR -17 245 5 3207 119 40 13 chr1_random 8327091 8327645 -828474 - LTR49 LTR ERV1 0 595 27 181 203 101 51 chr1_random 8327651 8327730 -828389 + MIR3 SINE MIR 105 187 -21 4608 139 24 69 chr1_random 8328054 8328094 -828025 - L1MB3 LINE L1 -2 6181 6141 2109 146 0 9 chr1_random 8328094 8328409 -827710 - AluSx SINE Alu 0 312 1 4608 139 24 69 chr1_random 8328409 8329370 -826749 - L1MB3 LINE L1 -42 6141 5227 231 307 53 0 chr1_random 8329509 8329584 -826535 - L2 LINE L2 -61 3211 3133 338 237 103 0 chr1_random 8330232 8330329 -825790 - L2 LINE L2 -7 3306 3200 482 216 27 0 chr1_random 8330498 8330609 -825510 - MER81 DNA DNA 0 114 1 1240 163 33 44 chr1_random 8330639 8330909 -825210 - ORSL DNA AcHobo -8 267 1 302 83 0 50 chr1_random 8331017 8331077 -825042 + (ATG)n Simple_repeat Simple_repeat 3 59 0 304 244 67 22 chr1_random 8331082 8331172 -824947 - MIR SINE MIR -5 257 164 403 129 0 0 chr1_random 8331200 8331262 -824857 + AluJ/FLAM SINE Alu 7 68 -244 367 309 37 7 chr1_random 8331264 8331400 -824719 - MIR SINE MIR -74 188 49 339 333 19 0 chr1_random 8331408 8331516 -824603 - L2 LINE L2 -5 3267 3158 900 108 0 8 chr1_random 8331742 8331872 -824247 + FLAM_C SINE Alu 2 130 -3 201 294 71 24 chr1_random 8331977 8332062 -824057 + MIR SINE MIR 139 227 -35 1560 93 49 73 chr1_random 8332869 8333116 -823003 - AluSg/x SINE Alu -6 306 66 422 250 0 18 chr1_random 8333699 8333811 -822308 - MIR3 SINE MIR -14 194 85 2079 128 0 30 chr1_random 8334821 8335126 -820993 - AluJo SINE Alu -16 296 1 760 166 133 0 chr1_random 8335126 8335277 -820842 + MER58B DNA MER1_type 171 341 0 415 293 52 47 chr1_random 8335389 8335601 -820518 - MIR SINE MIR -1 261 49 263 341 22 0 chr1_random 8335622 8335713 -820406 - L2 LINE L2 -22 3250 3158 1823 147 14 14 chr1_random 8335956 8336249 -819870 + AluJo SINE Alu 1 293 -19 270 0 0 0 chr1_random 8336249 8336279 -819840 + (TG)n Simple_repeat Simple_repeat 2 31 0 536 267 17 33 chr1_random 8336316 8336496 -819623 + MIR SINE MIR 86 262 0 809 220 11 6 chr1_random 8337633 8337810 -818309 + MER5B DNA MER1_type 1 178 0 339 296 82 20 chr1_random 8339056 8339210 -816909 + MIR SINE MIR 2 161 -63 2193 112 27 3 chr1_random 8339331 8339627 -816492 + AluSx SINE Alu 1 303 -9 278 216 14 0 chr1_random 8339627 8339701 -816418 + GA-rich Low_complexity Low_complexity 1 75 0 1684 154 73 18 chr1_random 8339953 8340239 -815880 - AluJb SINE Alu -10 302 1 624 247 102 8 chr1_random 8340477 8340701 -815418 - MIR SINE MIR -13 249 4 1942 139 13 17 chr1_random 8341497 8341799 -814320 + AluJo SINE Alu 5 305 -7 279 311 159 0 chr1_random 8342347 8342479 -813640 - MIR SINE MIR -21 241 89 543 240 0 33 chr1_random 8342756 8342906 -813213 - MIR SINE MIR -23 239 95 2269 84 11 0 chr1_random 8343267 8343553 -812566 + AluY SINE Alu 1 289 -22 451 284 154 48 chr1_random 8347396 8347727 -808392 + L2 LINE L2 2888 3253 -19 319 247 157 51 chr1_random 8347813 8347991 -808128 - L2 LINE L2 -1 3271 3075 265 273 273 11 chr1_random 8351202 8351378 -804741 - L1MC5 LINE L1 -52 7909 7688 289 63 0 95 chr1_random 8352434 8352497 -803622 + (CA)n Simple_repeat Simple_repeat 2 58 0 1238 66 174 0 chr1_random 8356316 8356512 -799607 - MER30 DNA MER1_type 0 230 1 816 271 228 26 chr1_random 8356755 8356988 -799131 - L2 LINE L2 -945 2369 2184 2189 99 13 29 chr1_random 8356988 8357301 -798818 + AluSp SINE Alu 5 312 -1 816 271 228 26 chr1_random 8357301 8357945 -798174 - L2 LINE L2 -1130 2184 1315 512 230 14 0 chr1_random 8558340 8558479 -597640 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 2060 134 17 3 chr1_random 8558718 8559017 -597102 + AluSg SINE Alu 1 303 -7 27 0 0 0 chr1_random 8559148 8559175 -596944 + AT_rich Low_complexity Low_complexity 1 27 0 2156 111 7 0 chr1_random 8559653 8559950 -596169 - AluY SINE Alu -12 299 1 2173 115 6 10 chr1_random 8560006 8560320 -595799 - AluSp SINE Alu 0 313 1 3744 28 10 1 chr1_random 8560591 8561077 -595042 - L1HS LINE L1 0 6155 5668 1828 148 45 0 chr1_random 8561125 8561416 -594703 - AluSx SINE Alu -8 304 1 2153 125 0 7 chr1_random 8561438 8561743 -594376 - AluY SINE Alu -6 305 3 652 280 89 22 chr1_random 8561866 8562091 -594028 + MIR SINE MIR 3 242 -20 1815 145 73 26 chr1_random 8562121 8562465 -593654 - Tigger3(Golem) DNA MER2_type -1 3028 2669 1111 167 8 1 chr1_random 8562567 8584997 -571122 - ALR/Alpha Satellite centromeric 0 22579 1 1164 164 4 1 chr1_random 8585105 8599887 -556232 - ALR/Alpha Satellite centromeric 0 14827 1 8293 44 1 0 chr1_random 8599887 8600931 -555188 - L1PA3 LINE L1 -799 5347 4303 6913 32 1 1 chr1_random 8600932 8601791 -554328 + L1PA3 LINE L1 5329 6187 0 1235 162 1 0 chr1_random 8601791 8606574 -549545 - ALR/Alpha Satellite centromeric -1 4786 1 6944 58 0 1 chr1_random 8606574 8607470 -548649 - L1P LINE L1 -1193 4953 4059 1481 101 0 0 chr1_random 8607474 8607693 -548426 + L1PA4 LINE L1 5888 6106 -49 1202 160 6 1 chr1_random 8607795 8627072 -529047 - ALR/Alpha Satellite centromeric 0 19369 1 387 204 7 0 chr1_random 8627070 8627169 -528950 - CER Satellite Satellite 0 99 1 * 1055 288 34 47 chr1_random 8628713 8629179 -526940 + MLT1C LTR MaLR 3 462 -5 228 250 83 60 chr1_random 8629183 8629267 -526852 + MER5A DNA MER1_type 56 141 -48 654 212 78 32 chr1_random 8629297 8629468 -526651 - MIR SINE MIR -48 214 35 1960 124 34 0 chr1_random 8629721 8630012 -526107 - AluSg SINE Alu -9 301 1 2291 112 3 0 chr1_random 8630258 8630570 -525549 - AluSp SINE Alu 0 313 1 249 396 77 22 chr1_random 8630878 8631333 -524786 + L2 LINE L2 2164 2643 -671 599 95 34 50 chr1_random 8631384 8631563 -524556 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 29 28 0 0 chr1_random 8632257 8632293 -523826 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr1_random 8632416 8632444 -523675 + AT_rich Low_complexity Low_complexity 1 28 0 216 200 0 0 chr1_random 8633244 8633294 -522825 + (TA)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr1_random 8633381 8633403 -522716 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr1_random 8633484 8633512 -522607 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr1_random 8633573 8633616 -522503 + AT_rich Low_complexity Low_complexity 1 43 0 252 0 0 0 chr1_random 8633667 8633695 -522424 + (TTA)n Simple_repeat Simple_repeat 3 30 0 14329 32 0 0 chr1_random 8633695 8636155 -519964 - L1PA3 LINE L1 -18 6137 3670 1125 125 12 0 chr1_random 8636319 8636487 -519632 + AluSg/x SINE Alu 129 298 -14 1097 172 11 0 chr1_random 8636587 8641558 -514561 - ALR/Alpha Satellite centromeric 0 5027 1 1116 159 13 0 chr1_random 8641573 8643223 -512896 - ALR/Alpha Satellite centromeric 0 1670 1 1267 157 7 1 chr1_random 8643330 8665994 -490125 - ALR/Alpha Satellite centromeric 0 22817 1 1322 137 4 1 chr1_random 8666008 8681313 -474806 - ALR/Alpha Satellite centromeric 0 15357 1 1294 154 3 1 chr1_random 8681328 8696322 -459797 - ALR/Alpha Satellite centromeric 0 15012 1 7609 30 0 0 chr1_random 8696322 8697294 -458825 - L1PA2 LINE L1 -2 6153 5182 1123 171 0 0 chr1_random 8697300 8697935 -458184 - ALR/Alpha Satellite centromeric 0 635 1 1016 178 3 1 chr1_random 8697950 8699341 -456778 - ALR/Alpha Satellite centromeric 0 1393 1 1240 137 0 1 chr1_random 8699447 8700629 -455490 - ALR/Alpha Satellite centromeric 0 1181 1 1322 138 4 0 chr1_random 8700643 8715757 -440362 - ALR/Alpha Satellite centromeric 0 15174 1 1236 153 3 2 chr1_random 8715772 8730765 -425354 - ALR/Alpha Satellite centromeric 0 17529 32 14226 34 0 0 chr1_random 8730765 8733250 -422869 - L1PA2 LINE L1 -1 6154 3670 1236 153 3 2 chr1_random 8733250 8733283 -422836 - ALR/Alpha Satellite centromeric -17497 32 1 1233 121 11 0 chr1_random 8733414 8733596 -422523 + AluSg/x SINE Alu 129 312 0 216 233 0 0 chr1_random 8733655 8733698 -422421 + MIR SINE MIR 199 241 -21 1834 133 7 31 chr1_random 8733703 8734027 -422092 - AluSc SINE Alu 0 317 1 1851 130 14 3 chr1_random 8734179 8734471 -421648 + AluSq SINE Alu 1 295 -18 2235 79 0 0 chr1_random 8734473 8734829 -421290 + AluY SINE Alu 3 358 0 23 0 0 0 chr1_random 8735149 8735172 -420947 + AT_rich Low_complexity Low_complexity 1 23 0 29 60 0 0 chr1_random 8735775 8735825 -420294 + AT_rich Low_complexity Low_complexity 1 50 0 1952 127 0 65 chr1_random 8736277 8736600 -419519 - AluSg SINE Alu -8 302 1 1369 189 104 0 chr1_random 8736628 8736908 -419211 - AluSx SINE Alu -3 309 1 2196 122 0 3 chr1_random 8736930 8737241 -418878 - AluY SINE Alu 0 311 2 1911 168 7 0 chr1_random 8737281 8737584 -418535 - AluSx SINE Alu -7 305 1 537 289 35 12 chr1_random 8738406 8738579 -417540 - LTR16B LTR ERVL -92 372 196 273 29 0 0 chr1_random 8738959 8738998 -417121 + (TG)n Simple_repeat Simple_repeat 1 73 0 273 29 0 0 chr1_random 8738998 8739032 -417087 + (TG)n Simple_repeat Simple_repeat 2 35 0 397 340 58 29 chr1_random 8739222 8739602 -416517 - ERVL LTR ERVL -643 4842 4452 233 170 38 19 chr1_random 8739603 8739656 -416463 - MLT1F1 LTR MaLR -83 484 431 762 334 76 34 chr1_random 8739740 8740525 -415594 - ERVL LTR ERVL -1096 3900 3159 361 361 42 5 chr1_random 8740636 8740852 -415267 - ERVL LTR ERVL -2442 3322 3099 2099 102 0 14 chr1_random 8741060 8741345 -414774 + AluY SINE Alu 20 300 -11 1361 256 136 11 chr1_random 8741348 8742113 -414006 + L1ME3 LINE L1 5285 6158 -4 235 241 9 93 chr1_random 8742945 8743053 -413066 - MIR SINE MIR -44 218 120 2276 97 0 0 chr1_random 8744336 8744635 -411484 - AluY SINE Alu -8 303 5 2069 107 45 0 chr1_random 8745027 8745317 -410802 + AluSq SINE Alu 1 303 -10 1009 81 0 0 chr1_random 8745473 8745596 -410523 + AluY SINE Alu 12 134 -177 1531 183 51 3 chr1_random 8745596 8745891 -410228 + AluSx SINE Alu 1 309 -3 2008 159 0 0 chr1_random 8746902 8747204 -408915 - AluSx SINE Alu 0 312 11 2141 121 3 3 chr1_random 8747955 8748253 -407866 + AluSg SINE Alu 1 298 -12 1153 138 6 0 chr1_random 8748821 8748988 -407131 + AluSg/x SINE Alu 129 296 -16 512 230 14 0 chr1_random 8749261 8749400 -406719 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 2112 130 17 3 chr1_random 8749639 8749938 -406181 + AluSg SINE Alu 1 303 -7 28 111 0 0 chr1_random 8750069 8750195 -405924 + AT_rich Low_complexity Low_complexity 1 126 0 2168 114 7 0 chr1_random 8750575 8750874 -405245 - AluY SINE Alu -10 301 1 2177 121 6 10 chr1_random 8750939 8751253 -404866 - AluSp SINE Alu 0 313 1 1820 157 44 0 chr1_random 8751598 8751891 -404228 - AluSx SINE Alu -6 306 1 2193 115 0 13 chr1_random 8751913 8752218 -403901 - AluY SINE Alu -8 303 3 670 276 89 22 chr1_random 8752341 8752566 -403553 + MIR SINE MIR 3 242 -20 5746 154 61 24 chr1_random 8752596 8753501 -402618 - Tigger3b DNA MER2_type -1797 1231 361 2044 143 0 3 chr1_random 8753501 8753808 -402311 + AluSx SINE Alu 1 306 -6 2598 36 3 0 chr1_random 8753815 8754116 -402003 + AluY SINE Alu 1 302 -9 5746 154 61 24 chr1_random 8754116 8754389 -401730 - Tigger3b DNA MER2_type -2672 356 1 209 389 36 7 chr1_random 8754421 8754560 -401559 + L2 LINE L2 2386 2528 -786 22 0 0 0 chr1_random 8755004 8755026 -401093 + AT_rich Low_complexity Low_complexity 1 22 0 245 27 54 0 chr1_random 8755486 8755523 -400596 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2050 136 0 3 chr1_random 8755949 8756244 -399875 + AluSc SINE Alu 3 296 -13 876 181 13 7 chr1_random 8756601 8756756 -399363 - AluSg/x SINE Alu -21 291 136 2083 152 0 9 chr1_random 8756759 8756937 -399182 - AluSx SINE Alu 0 312 137 1660 116 0 0 chr1_random 8756937 8757152 -398967 - AluSg SINE Alu -95 215 1 2083 152 0 9 chr1_random 8757152 8757288 -398831 - AluSx SINE Alu -175 137 1 3494 206 30 75 chr1_random 8757357 8758372 -397747 + LTR5 LTR ERVK 1 969 0 442 239 33 38 chr1_random 8759808 8759992 -396127 - LTR37B LTR ERV1 -24 444 262 2022 116 20 13 chr1_random 8759992 8760294 -395825 + AluY SINE Alu 1 304 -7 3870 199 39 40 chr1_random 8760305 8760588 -395531 + L1MB4 LINE L1 4905 5187 -993 2049 118 36 0 chr1_random 8760588 8760867 -395252 + AluSg SINE Alu 3 291 -19 3870 199 39 40 chr1_random 8760867 8761869 -394250 + L1MB4 LINE L1 5187 6180 0 472 264 0 7 chr1_random 8762069 8762209 -393910 - LTR37B LTR ERV1 -200 268 130 2455 59 7 0 chr1_random 8762404 8762707 -393412 - AluY SINE Alu -6 305 1 1483 185 102 10 chr1_random 8763050 8763364 -392755 + MER61A LTR ERV1 1 343 0 2245 105 3 0 chr1_random 8763899 8764203 -391916 - AluSc SINE Alu 0 309 5 2284 176 91 36 chr1_random 8764681 8765208 -390911 - L1MA9 LINE L1 -2 6310 5755 552 252 25 0 chr1_random 8765216 8765375 -390744 + L1MC/D LINE L1 5254 5416 -928 631 258 91 18 chr1_random 8765384 8765798 -390321 + L1MC3 LINE L1 1713 2214 -4212 304 248 75 99 chr1_random 8765802 8765963 -390156 + L1MC3 LINE L1 2167 2323 -4103 1475 182 68 0 chr1_random 8765963 8766282 -389837 + AluSx SINE Alu 1 337 0 3495 249 65 18 chr1_random 8766305 8767669 -388450 + L1MC3 LINE L1 2936 4363 -2063 2702 197 170 81 chr1_random 8767704 8767816 -388303 + L1MC3 LINE L1 5828 5929 -2136 1519 131 6 131 chr1_random 8767816 8768159 -387960 - AluSx SINE Alu -12 300 1 2702 197 170 81 chr1_random 8768159 8768477 -387642 + L1MC3 LINE L1 5929 6217 -1848 2297 72 7 13 chr1_random 8768477 8768782 -387337 - AluY SINE Alu -8 303 1 2702 197 170 81 chr1_random 8768782 8769006 -387113 + L1MC3 LINE L1 6217 6419 -1646 2256 100 0 19 chr1_random 8769006 8769315 -386804 + AluSq SINE Alu 9 311 -2 2702 197 170 81 chr1_random 8769315 8769738 -386381 + L1MC3 LINE L1 6419 7004 -1061 314 133 67 17 chr1_random 8770010 8770070 -386049 - AluJb SINE Alu -7 295 233 421 182 0 0 chr1_random 8770077 8770154 -385965 + L1MC/D LINE L1 5463 5539 -794 1128 222 16 12 chr1_random 8770155 8770398 -385721 - AluJb SINE Alu -68 244 1 441 297 52 124 chr1_random 8770567 8771294 -384825 + L1M2 LINE L1 473 1147 -5702 2236 65 33 29 chr1_random 8772823 8773158 -382961 + AluY SINE Alu 1 311 0 1969 135 10 0 chr1_random 8773159 8773455 -382664 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr1_random 8774633 8774654 -381465 + AT_rich Low_complexity Low_complexity 1 21 0 307 252 21 42 chr1_random 8775467 8775610 -380509 - MER104 DNA Tc2 -37 143 4 514 287 82 49 chr1_random 8775703 8775959 -380160 - MIR SINE MIR -1 261 2 21 57 0 0 chr1_random 8776354 8776389 -379730 + AT_rich Low_complexity Low_complexity 1 35 0 331 305 89 6 chr1_random 8776909 8777128 -378991 + MER102a DNA MER1_type 85 329 -1 22 70 0 0 chr1_random 8777183 8777226 -378893 + AT_rich Low_complexity Low_complexity 1 43 0 2165 126 3 7 chr1_random 8777636 8777946 -378173 - AluSc SINE Alu 0 309 1 256 312 91 0 chr1_random 8778480 8778557 -377562 - L2 LINE L2 -50 3222 3139 22 56 0 0 chr1_random 8778967 8779003 -377116 + AT_rich Low_complexity Low_complexity 1 36 0 1030 185 6 6 chr1_random 8779300 8779478 -376641 + AluSx SINE Alu 2 179 -133 497 257 0 0 chr1_random 8781215 8781320 -374799 + U6 snRNA snRNA 1 105 -2 31 58 0 0 chr1_random 8781765 8781817 -374302 + AT_rich Low_complexity Low_complexity 1 52 0 597 186 0 0 chr1_random 8781988 8782090 -374029 - AluJ/FLAM SINE Alu -210 102 1 293 353 80 0 chr1_random 8782170 8782320 -373799 - MIR SINE MIR -44 218 57 39 38 0 0 chr1_random 8783079 8783132 -372987 + AT_rich Low_complexity Low_complexity 1 53 0 45 105 0 0 chr1_random 8783253 8783424 -372695 + AT_rich Low_complexity Low_complexity 1 171 0 385 141 0 0 chr1_random 8783425 8783491 -372628 - FLAM SINE Alu -8 125 68 1547 210 45 74 chr1_random 8783543 8783990 -372129 - Tigger2a DNA MER2_type 0 434 1 186 373 85 17 chr1_random 8784521 8784639 -371480 - L2 LINE L2 -2 3270 3145 229 200 11 56 chr1_random 8784758 8784848 -371271 + (TTA)n Simple_repeat Simple_repeat 2 87 0 1951 132 7 19 chr1_random 8784993 8785303 -370816 + AluSx SINE Alu 3 308 -4 2470 177 72 12 chr1_random 8785594 8786108 -370011 + LTR10A LTR ERV1 3 547 -62 25790 180 34 46 chr1_random 8786121 8788038 -368081 + HERVI LTR ERV1 1 1940 -5845 2264 98 0 3 chr1_random 8788038 8788333 -367786 - AluY SINE Alu -17 294 1 25790 180 34 46 chr1_random 8788333 8791690 -364429 + HERVI LTR ERV1 1940 5210 -2575 7762 237 14 35 chr1_random 8791688 8793617 -362502 + LTR10A-int LTR ERV1 4758 6647 -2 * 2451 156 112 20 chr1_random 8793691 8794192 -361927 + LTR10A LTR ERV1 1 547 -62 519 306 136 4 chr1_random 8794814 8795079 -361040 - MLT1L LTR MaLR -179 436 137 892 277 47 0 chr1_random 8795275 8795488 -360631 - MER58A DNA MER1_type 0 224 2 26 50 0 0 chr1_random 8795691 8795731 -360388 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr1_random 8795799 8795822 -360297 + AT_rich Low_complexity Low_complexity 1 23 0 333 342 97 38 chr1_random 8796012 8796351 -359768 - L2 LINE L2 -924 2390 2032 1301 229 86 30 chr1_random 8796623 8797239 -358880 - L1MDa LINE L1 -3558 2657 2008 538 249 51 61 chr1_random 8797238 8797435 -358684 - L1MDa LINE L1 -4258 2138 1944 * 230 247 0 72 chr1_random 8797449 8797546 -358573 - L1MDa LINE L1 -4916 1299 1210 268 238 50 56 chr1_random 8797585 8797745 -358374 - L1MDa LINE L1 -5265 1131 973 * 882 325 112 45 chr1_random 8797731 8798393 -357726 - L1MDa LINE L1 -5651 745 40 336 357 88 43 chr1_random 8798401 8798729 -357390 + L2 LINE L2 2930 3272 0 2333 75 7 16 chr1_random 8798885 8799192 -356927 + AluY SINE Alu 1 304 -7 284 287 99 0 chr1_random 8799485 8799666 -356453 - L1ME LINE L1 -283 5838 5640 31 0 0 0 chr1_random 8799843 8799874 -356245 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr1_random 8800011 8800033 -356086 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr1_random 8800164 8800203 -355916 + AT_rich Low_complexity Low_complexity 1 39 0 1749 223 48 9 chr1_random 8800759 8800976 -355143 - L1M4 LINE L1 -464 5720 5513 2096 66 0 4 chr1_random 8800976 8801235 -354884 - AluY SINE Alu -53 258 1 1749 223 48 9 chr1_random 8801235 8801689 -354430 - L1M4 LINE L1 -671 5513 5023 1380 186 8 11 chr1_random 8801691 8801954 -354165 + L1PB4 LINE L1 5883 6144 -12 802 177 83 26 chr1_random 8802006 8802198 -353921 - L1MB4 LINE L1 -2 6178 5976 301 260 0 0 chr1_random 8802202 8802279 -353840 + MER3 DNA MER1_type 133 209 0 405 300 123 24 chr1_random 8802365 8802737 -353382 + L2 LINE L2 2661 3074 -239 894 185 25 0 chr1_random 8802802 8802959 -353160 - AluJo SINE Alu -32 280 120 302 309 149 30 chr1_random 8802959 8803127 -352992 + L2 LINE L2 3125 3312 -1 5823 129 25 11 chr1_random 8803240 8803739 -352380 - L1P LINE L1 -2353 3793 3302 2206 121 0 0 chr1_random 8803739 8804036 -352083 - AluSg SINE Alu -13 297 1 5823 129 25 11 chr1_random 8804036 8804509 -351610 - L1P LINE L1 -2844 3302 2808 2788 91 0 0 chr1_random 8804527 8804899 -351220 + L1PA8 LINE L1 5788 6159 -13 1392 278 84 23 chr1_random 8804924 8805672 -350447 + L1M4 LINE L1 4496 5289 -857 14989 47 2 1 chr1_random 8805709 8808347 -347772 + L1PA5 LINE L1 3507 6145 -9 2019 104 32 26 chr1_random 8809137 8809446 -346673 + AluY SINE Alu 1 311 0 1723 148 51 46 chr1_random 8809959 8810331 -345788 + THE1C LTR MaLR 2 375 0 358 215 0 0 chr1_random 8810331 8810396 -345723 + THE1C-int LTR MaLR 1 65 -1515 6580 156 18 7 chr1_random 8810396 8811540 -344579 + THE1C-int LTR MaLR 215 1422 -158 313 173 0 0 chr1_random 8812615 8812667 -343452 + MER51D LTR ERV1 500 551 -106 1974 136 3 10 chr1_random 8812779 8813080 -343039 + AluSq SINE Alu 1 299 -14 7784 98 4 1 chr1_random 8813644 8814712 -341407 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr1_random 8814767 8814809 -341310 + AT_rich Low_complexity Low_complexity 1 42 0 2033 138 0 0 chr1_random 8814911 8815202 -340917 + AluSq SINE Alu 1 291 -22 2821 21 0 0 chr1_random 8815546 8815873 -340246 - L1PA2 LINE L1 0 6155 5829 3526 30 0 5 chr1_random 8815873 8816302 -339817 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr1_random 8816417 8816438 -339681 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr1_random 8816578 8816606 -339513 + AT_rich Low_complexity Low_complexity 1 28 0 2372 82 0 3 chr1_random 8816810 8817116 -339003 - AluY SINE Alu -6 305 1 1221 126 6 0 chr1_random 8818439 8818613 -337506 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr1_random 8818933 8818978 -337141 + AT_rich Low_complexity Low_complexity 1 45 0 1034 152 162 0 chr1_random 8819607 8819805 -336314 + MER30 DNA MER1_type 1 230 0 3587 205 39 17 chr1_random 8820014 8820832 -335287 - L1PA16 LINE L1 -14 6152 5317 5087 271 49 17 chr1_random 8820835 8821291 -334828 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr1_random 8821291 8821313 -334806 + (TG)n Simple_repeat Simple_repeat 2 23 0 5087 271 49 17 chr1_random 8821313 8822768 -333351 - L1 LINE L1 -1304 4842 3310 3988 230 80 30 chr1_random 8822779 8822974 -333145 + L1MA8 LINE L1 3897 4081 -2219 2118 116 3 0 chr1_random 8822974 8823268 -332851 - AluY SINE Alu -16 295 1 3988 230 80 30 chr1_random 8823268 8825010 -331109 + L1MA8 LINE L1 4081 5941 -359 539 213 173 4 chr1_random 8825021 8825246 -330873 + L1MA8 LINE L1 6025 6287 -4 2087 135 0 0 chr1_random 8825989 8826277 -329842 - AluSc SINE Alu -15 294 7 1949 157 0 7 chr1_random 8826970 8827276 -328843 + AluSg SINE Alu 5 308 -2 833 162 37 11 chr1_random 8827910 8828101 -328018 + L1MA3 LINE L1 6110 6305 0 350 313 143 24 chr1_random 8832582 8832918 -323201 + L1MB2 LINE L1 2259 2634 -4862 567 288 117 65 chr1_random 8832920 8832948 -323171 + L1MB2 LINE L1 2471 2496 -5069 1273 232 21 7 chr1_random 8832948 8833232 -322887 + AluJb SINE Alu 1 288 -24 567 288 117 65 chr1_random 8833232 8834667 -321452 + L1MB2 LINE L1 2496 3855 -3710 2159 112 10 0 chr1_random 8834667 8834972 -321147 + AluY SINE Alu 1 308 -3 567 288 117 65 chr1_random 8834972 8834997 -321122 + L1MB2 LINE L1 3855 3877 -3688 1815 146 33 0 chr1_random 8834997 8835271 -320848 + AluSx SINE Alu 12 294 -18 567 288 117 65 chr1_random 8835271 8835561 -320558 + L1MB2 LINE L1 3877 4320 -3245 706 264 52 18 chr1_random 8835564 8835893 -320226 + L1MB2 LINE L1 5930 6269 -1296 1073 267 54 41 chr1_random 8835896 8835919 -320200 + L1MB2 LINE L1 7094 7115 -475 2091 118 0 7 chr1_random 8835919 8836215 -319904 - AluY SINE Alu -17 294 1 1073 267 54 41 chr1_random 8836215 8836358 -319761 + L1MB2 LINE L1 7115 7255 -335 1867 143 17 10 chr1_random 8836358 8836651 -319468 + AluSp SINE Alu 1 295 -18 1073 267 54 41 chr1_random 8836651 8836947 -319172 + L1MB2 LINE L1 7255 7563 -27 368 264 26 109 chr1_random 8837338 8837360 -318759 + L1MB2 LINE L1 2360 2382 -5185 2272 78 0 3 chr1_random 8837360 8837687 -318432 + AluY SINE Alu 1 326 0 368 264 26 109 chr1_random 8837687 8837856 -318263 + L1MB2 LINE L1 2382 2536 -5031 263 254 9 45 chr1_random 8837896 8838006 -318113 + L1MB2 LINE L1 2887 2992 -4573 522 259 0 9 chr1_random 8838007 8838123 -317996 + FLAM_C SINE Alu 1 115 -28 2017 125 0 4 chr1_random 8838381 8838697 -317422 + AluSg1 SINE Alu 3 317 0 468 268 66 36 chr1_random 8838711 8839073 -317046 + L1MB2 LINE L1 3273 3645 -3922 489 185 0 0 chr1_random 8839157 8839238 -316881 + AluJ/FLAM SINE Alu 4 84 -228 711 287 40 53 chr1_random 8839238 8839611 -316508 + L1MB2 LINE L1 3657 4034 -3531 1938 218 36 2 chr1_random 8839611 8840023 -316096 - MSTB LTR MaLR 0 426 1 711 287 40 53 chr1_random 8840023 8840153 -315966 + L1MB2 LINE L1 4034 4164 -3401 1358 206 33 11 chr1_random 8840153 8840429 -315690 + AluJb SINE Alu 1 282 -30 711 287 40 53 chr1_random 8840429 8840580 -315539 + L1MB2 LINE L1 4164 4303 -3262 1215 276 86 20 chr1_random 8840710 8841545 -314574 + L1MB2 LINE L1 6095 6983 -607 22 0 0 0 chr1_random 8841564 8841586 -314533 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr1_random 8841632 8841672 -314447 + AT_rich Low_complexity Low_complexity 1 40 0 324 124 66 0 chr1_random 8841813 8841950 -314169 + (TA)n Simple_repeat Simple_repeat 2 147 0 204 125 62 0 chr1_random 8841967 8842015 -314104 + (TA)n Simple_repeat Simple_repeat 2 52 0 1651 202 51 33 chr1_random 8842015 8842430 -313689 + L1MB2 LINE L1 7092 7519 -71 1252 243 7 10 chr1_random 8842430 8842718 -313401 - AluJo SINE Alu -24 288 2 1651 202 51 33 chr1_random 8842718 8842773 -313346 + L1MB2 LINE L1 7519 7572 -18 1933 99 4 8 chr1_random 8842991 8843253 -312866 + AluSq SINE Alu 1 261 -52 492 353 20 5 chr1_random 8843262 8843463 -312656 + L1MA9 LINE L1 348 551 -5404 451 288 31 18 chr1_random 8843594 8843757 -312362 + L1MA9 LINE L1 701 865 -5090 3730 232 51 17 chr1_random 8843762 8845880 -310239 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr1_random 8845955 8845984 -310135 + AT_rich Low_complexity Low_complexity 1 29 0 205 413 0 0 chr1_random 8846438 8846513 -309606 - L2 LINE L2 -498 2816 2742 363 342 161 0 chr1_random 8847759 8847920 -308199 - MER5A DNA MER1_type -1 188 2 489 216 92 60 chr1_random 8848066 8848284 -307835 + L1MC4 LINE L1 7281 7505 -537 2231 98 0 29 chr1_random 8848616 8848931 -307188 - AluSx SINE Alu -6 306 1 232 331 162 7 chr1_random 8849785 8849933 -306186 - MER5A DNA MER1_type 0 189 19 253 216 18 108 chr1_random 8850150 8850261 -305858 - MIR SINE MIR -9 253 153 1983 127 3 3 chr1_random 8850345 8850628 -305491 - AluSp SINE Alu -30 283 1 2356 174 16 5 chr1_random 8852352 8852784 -303335 - LTR56 LTR ERV1 0 445 9 1454 178 26 16 chr1_random 8853274 8853702 -302417 - MER67C LTR ERV1 -1 709 218 1521 118 14 0 chr1_random 8854608 8854829 -301290 + AluSq SINE Alu 1 224 -89 724 132 4 0 chr1_random 8854929 8863971 -292148 - CER Satellite Satellite 0 9074 1 40398 56 3 2 chr1_random 8863994 8870146 -285973 + L1PA4 LINE L1 9 6164 0 328 272 108 52 chr1_random 8870229 8870442 -285677 + L1MDa LINE L1 1514 1738 -4802 252 300 70 19 chr1_random 8870490 8870700 -285419 + L1MDa LINE L1 1657 2080 -4641 21 0 0 0 chr1_random 8870849 8870870 -285249 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr1_random 8870986 8871010 -285109 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr1_random 8871264 8871393 -284726 + L1MEc LINE L1 55 185 -6211 731 320 64 63 chr1_random 8871518 8872398 -283721 + L1MEc LINE L1 351 1222 -4983 765 150 23 0 chr1_random 8872479 8872612 -283507 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr1_random 8873877 8873950 -282169 + (TA)n Simple_repeat Simple_repeat 1 73 0 1391 181 87 56 chr1_random 8873984 8874366 -281753 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr1_random 8874366 8874645 -281474 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr1_random 8874645 8874676 -281443 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr1_random 8875069 8875104 -281015 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr1_random 8875131 8875170 -280949 + AT_rich Low_complexity Low_complexity 1 39 0 461 246 144 5 chr1_random 8875656 8875843 -280276 + MER20 DNA MER1_type 4 216 -3 1775 163 58 21 chr1_random 8875983 8876412 -279707 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr1_random 8876596 8877146 -278973 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr1_random 8877712 8877764 -278355 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr1_random 8877921 8878073 -278046 + (TA)n Simple_repeat Simple_repeat 2 154 0 26 0 0 0 chr1_random 8878188 8878214 -277905 + AT_rich Low_complexity Low_complexity 1 26 0 13374 40 2 0 chr1_random 8878302 8880045 -276074 - L1PA2 LINE L1 -1961 4185 2440 9971 31 0 2 chr1_random 8880045 8882012 -274107 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr1_random 8882012 8882041 -274078 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr1_random 8882108 8882129 -273990 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1236 253 46 10 chr1_random 8882867 8883282 -272837 - MER54A LTR ERVL 0 901 472 2072 118 74 15 chr1_random 8883320 8883658 -272461 - THE1B LTR MaLR 0 364 7 1499 214 51 2 chr1_random 8883667 8884060 -272059 - MER54A LTR ERVL -489 412 1 1600 209 0 10 chr1_random 8885236 8885538 -270581 - AluJo SINE Alu -3 309 11 1303 235 47 72 chr1_random 8886525 8886767 -269352 - MLT1D LTR MaLR 0 505 258 2150 102 7 7 chr1_random 8886767 8887060 -269059 - AluSc SINE Alu -16 293 1 1303 235 47 72 chr1_random 8887060 8887331 -268788 - MLT1D LTR MaLR -247 258 5 472 213 22 0 chr1_random 8887426 8887562 -268557 + GA-rich Low_complexity Low_complexity 2 140 0 1043 263 62 9 chr1_random 8887705 8888028 -268091 + MER77 LTR ERV1 260 599 -6 813 271 65 23 chr1_random 8889164 8889842 -266277 - L1MEc LINE L1 -3483 2732 2046 3285 243 41 30 chr1_random 8889842 8890780 -265339 + Tigger6a DNA MER2_type 2 955 -642 1758 193 3 3 chr1_random 8890780 8891086 -265033 - AluJb SINE Alu -6 306 1 3285 243 41 30 chr1_random 8891086 8891217 -264902 + Tigger6a DNA MER2_type 955 1083 0 813 271 65 23 chr1_random 8891217 8891294 -264825 - L1MEc LINE L1 -4169 2046 1974 4963 170 8 22 chr1_random 8891342 8892518 -263601 + L1PA16 LINE L1 5007 6165 -1 736 277 104 101 chr1_random 8892520 8892698 -263421 - L1MEc LINE L1 -4413 1983 1807 2321 114 0 0 chr1_random 8892698 8893005 -263114 - AluSg SINE Alu -3 307 1 736 277 104 101 chr1_random 8893005 8893086 -263033 - L1MEc LINE L1 -4589 1807 1728 3439 29 0 14 chr1_random 8893086 8893505 -262614 + L1PA4 LINE L1 5740 6152 -3 736 277 104 101 chr1_random 8893505 8893992 -262127 - L1MEc LINE L1 -4668 1728 1079 835 329 65 16 chr1_random 8894004 8894733 -261386 - L1MEc LINE L1 -5483 913 150 385 352 69 30 chr1_random 8894850 8895185 -260934 - HAL1b LINE L1 -963 385 38 383 192 39 131 chr1_random 8896731 8896861 -259258 - MLT1A1 LTR MaLR 0 365 248 195 100 0 0 chr1_random 8949930 8949960 -206159 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 216 163 61 0 chr1_random 8950190 8950239 -205880 + (GGGTG)n Simple_repeat Simple_repeat 4 55 0 356 333 50 0 chr1_random 8951845 8951965 -204154 + HAL1b LINE L1 665 790 -558 875 294 97 102 chr1_random 8952264 8952441 -203678 - L1MEd LINE L1 -2845 3284 3108 2318 113 0 3 chr1_random 8952441 8952752 -203367 - AluSx SINE Alu -2 310 1 875 294 97 102 chr1_random 8952752 8953749 -202370 - L1MEd LINE L1 -3021 3108 2116 186 43 0 0 chr1_random 8953782 8953805 -202314 + (TA)n Simple_repeat Simple_repeat 1 23 0 2253 92 0 16 chr1_random 8954329 8954635 -201484 + AluSg SINE Alu 1 301 -9 934 322 123 40 chr1_random 8954779 8955861 -200258 - L1MEd LINE L1 -4574 1736 506 242 351 127 0 chr1_random 8957964 8958098 -198021 - LTR16C LTR ERVL -104 387 237 227 228 0 70 chr1_random 8958144 8958201 -197918 - LTR16C LTR ERVL -356 135 83 21 36 0 0 chr1_random 8959743 8959771 -196348 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr1_random 8960461 8960490 -195629 + AT_rich Low_complexity Low_complexity 1 29 0 189 196 0 0 chr1_random 8960697 8960743 -195376 + (CA)n Simple_repeat Simple_repeat 2 47 0 29 0 0 0 chr1_random 8960964 8960993 -195126 + AT_rich Low_complexity Low_complexity 1 29 0 1501 226 27 0 chr1_random 8961046 8961383 -194736 + MER7A DNA MER2_type 3 346 0 572 273 94 38 chr1_random 8962011 8962291 -193828 - MER77 LTR ERV1 -6 599 323 243 202 95 0 chr1_random 8962351 8962435 -193684 + L1MB7 LINE L1 3064 3155 -2991 4561 257 68 17 chr1_random 8962462 8964256 -191863 + L1MB7 LINE L1 3565 5445 -729 2446 221 40 7 chr1_random 8964272 8964875 -191244 + L1MB7 LINE L1 5562 6184 0 378 371 53 7 chr1_random 8964936 8965217 -190902 - L2 LINE L2 -266 3047 2755 218 295 62 98 chr1_random 8965246 8965490 -190629 + L3 LINE CR1 760 994 -583 3082 195 36 5 chr1_random 8966936 8967597 -188522 - L1MB3 LINE L1 -1 6182 5501 27 62 0 0 chr1_random 8968120 8968168 -187951 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr1_random 8968281 8968303 -187816 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr1_random 8969755 8969790 -186329 + (CA)n Simple_repeat Simple_repeat 2 36 0 49 0 0 0 chr1_random 8971431 8971480 -184639 + AT_rich Low_complexity Low_complexity 1 49 0 1320 211 41 0 chr1_random 8971601 8971867 -184252 + AluJb SINE Alu 1 277 -35 216 0 0 0 chr1_random 8971871 8971895 -184224 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 225 281 111 23 chr1_random 8972574 8972745 -183374 - L1ME3A LINE L1 -6 6164 5979 934 94 8 0 chr1_random 8972925 8973052 -183067 + AluYb8 SINE Alu 12 139 -179 394 232 0 80 chr1_random 8973450 8973562 -182557 - MLT1D LTR MaLR -398 107 5 21 0 0 0 chr1_random 8973622 8973643 -182476 + AT_rich Low_complexity Low_complexity 1 21 0 556 214 11 14 chr1_random 8973657 8974018 -182101 + GA-rich Low_complexity Low_complexity 1 360 0 310 225 35 7 chr1_random 8974241 8974383 -181736 + GA-rich Low_complexity Low_complexity 4 149 0 813 261 56 17 chr1_random 8974491 8974848 -181271 - L1MCa LINE L1 -3526 2900 2530 244 276 21 35 chr1_random 8974917 8975062 -181057 - L1MCa LINE L1 -5031 1395 1253 1443 231 3 7 chr1_random 8975297 8975591 -180528 - MLT1A1 LTR MaLR 0 365 73 1932 226 42 74 chr1_random 8975948 8976571 -179548 + MER77 LTR ERV1 1 603 -2 189 0 0 0 chr1_random 8977608 8977629 -178490 + (CA)n Simple_repeat Simple_repeat 1 21 0 605 321 8 4 chr1_random 8977715 8977983 -178136 - L1MEc LINE L1 -3483 2732 2464 856 244 129 27 chr1_random 8978088 8978514 -177605 - L1MEc LINE L1 -3731 2484 2042 3438 240 42 31 chr1_random 8978514 8979452 -176667 + Tigger6a DNA MER2_type 2 955 -642 1730 189 3 3 chr1_random 8979452 8979758 -176361 - AluJb SINE Alu -6 306 1 3438 240 42 31 chr1_random 8979758 8979889 -176230 + Tigger6a DNA MER2_type 955 1083 0 856 244 129 27 chr1_random 8979889 8979966 -176153 - L1MEc LINE L1 -4173 2042 1974 5296 164 8 23 chr1_random 8980014 8981191 -174928 + L1PA16 LINE L1 5007 6165 -1 2208 110 7 0 chr1_random 8981377 8981685 -174434 - AluSg SINE Alu 0 310 1 251 54 27 0 chr1_random 8981729 8981766 -174353 - L1P LINE L1 -1219 4927 4890 3359 41 0 0 chr1_random 8981766 8982179 -173940 + L1PA4 LINE L1 5740 6152 -3 329 226 115 81 chr1_random 8982193 8982489 -173630 - L1MEc LINE L1 -4651 1745 1440 1027 314 76 25 chr1_random 8982678 8983405 -172714 - L1MEc LINE L1 -5483 913 150 265 315 28 42 chr1_random 8983522 8983665 -172454 - HAL1b LINE L1 -963 385 245 1362 207 21 75 chr1_random 8985404 8985790 -170329 - MLT1A1 LTR MaLR 0 365 1 1967 137 64 3 chr1_random 8985924 8986267 -169852 + THE1B LTR MaLR 1 364 0 1832 139 31 11 chr1_random 8986501 8986788 -169331 - AluSg SINE Alu -17 293 1 278 362 29 36 chr1_random 8986892 8987030 -169089 + MER5A DNA MER1_type 52 188 -1 1130 50 0 0 chr1_random 8987822 8987961 -168158 - AluY SINE Alu -17 294 156 225 0 0 0 chr1_random 8989087 8989112 -167007 + (T)n Simple_repeat Simple_repeat 1 25 0 290 292 69 8 chr1_random 8990129 8990259 -165860 + MIR SINE MIR 3 140 -122 2371 74 0 10 chr1_random 8990792 8991091 -165028 + AluY SINE Alu 1 296 -15 195 313 15 30 chr1_random 8991240 8991307 -164812 + MIR SINE MIR 182 247 -15 329 270 40 43 chr1_random 8991518 8991723 -164396 + MIR SINE MIR 8 262 0 2080 75 0 28 chr1_random 8993218 8993500 -162619 - AluY SINE Alu 0 311 38 189 0 0 0 chr1_random 8994088 8994109 -162010 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1125 263 74 47 chr1_random 8994140 8994585 -161534 - MLT1C LTR MaLR -5 462 6 1956 206 8 2 chr1_random 8994996 8995395 -160724 + L1PA16 LINE L1 5764 6164 -2 277 173 67 27 chr1_random 8995399 8995474 -160645 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr1_random 8997689 8997723 -158396 + (CA)n Simple_repeat Simple_repeat 1 34 0 4927 92 28 0 chr1_random 8998000 8998506 -157613 - L1PA13 LINE L1 -2 6161 5627 2534 110 0 27 chr1_random 8998506 8998880 -157239 + THE1B LTR MaLR 1 364 0 4927 92 28 0 chr1_random 8998880 8999101 -157018 - L1PA13 LINE L1 -536 5627 5414 1569 215 18 4 chr1_random 8999614 9000148 -155971 - L1M4 LINE L1 -548 6134 5592 712 231 45 38 chr1_random 9000167 9000431 -155688 - L1M4 LINE L1 -2191 4453 4188 * 5165 185 16 20 chr1_random 9000425 9001999 -154120 - L1PA16 LINE L1 -5 6864 5302 * 9663 121 17 29 chr1_random 9001993 9003458 -152661 + THE1B-int LTR MaLR 133 1580 0 2562 97 5 24 chr1_random 9003458 9003829 -152290 + THE1B LTR MaLR 1 364 0 245 242 22 88 chr1_random 9003840 9003931 -152188 + L1PA15-16 LINE L1 1112 1196 -5653 * 6530 218 16 10 chr1_random 9003882 9005314 -150805 - L1PA16 LINE L1 -5592 1257 1 638 229 94 0 chr1_random 9005310 9005480 -150639 - L1M4 LINE L1 -2433 4211 4026 * 1036 241 51 21 chr1_random 9005535 9006216 -149903 - L1M4 LINE L1 -3653 2991 2291 5019 252 49 39 chr1_random 9006292 9008427 -147692 - L1M4 LINE L1 -4491 2155 2 353 325 26 0 chr1_random 9009466 9009580 -146539 + L2 LINE L2 3192 3308 -5 21 89 0 0 chr1_random 9009669 9009725 -146394 + AT_rich Low_complexity Low_complexity 1 56 0 292 354 0 24 chr1_random 9009782 9009909 -146210 - MIR SINE MIR -110 152 29 370 298 145 61 chr1_random 9010041 9010518 -145601 - MLT1F LTR MaLR -8 534 18 220 252 165 35 chr1_random 9010591 9010706 -145413 + MIR SINE MIR 46 175 -87 839 300 103 16 chr1_random 9011516 9011836 -144283 - L2 LINE L2 -1646 1668 1321 692 300 32 28 chr1_random 9011931 9012214 -143905 + MLT1K LTR MaLR 300 583 -5 374 327 48 36 chr1_random 9012278 9012446 -143673 + MIR SINE MIR 1 170 -92 367 325 48 24 chr1_random 9012442 9012608 -143511 - MIR SINE MIR -30 232 63 * 311 277 22 66 chr1_random 9012630 9012767 -143352 - MER94 DNA DNA 0 134 4 1148 296 91 12 chr1_random 9012767 9013183 -142936 - LTR16A LTR ERVL -1 449 1 2499 61 0 0 chr1_random 9013257 9013553 -142566 - AluY SINE Alu -15 296 1 25 31 0 0 chr1_random 9013713 9013745 -142374 + AT_rich Low_complexity Low_complexity 1 32 0 2534 183 55 6 chr1_random 9014360 9014852 -141267 + MLT2B1 LTR ERVL 1 516 -4 2196 107 36 33 chr1_random 9016044 9016436 -139683 - LTR12 LTR ERV1 0 714 377 282 29 0 0 chr1_random 9018006 9018041 -138078 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr1_random 9018496 9018519 -137600 + AT_rich Low_complexity Low_complexity 1 23 0 1158 267 13 13 chr1_random 9018594 9018968 -137151 + L1MB4 LINE L1 3360 3733 -2413 * 2978 243 69 12 chr1_random 9018965 9019885 -136234 + L1MB4 LINE L1 4358 5390 -790 2030 118 0 0 chr1_random 9019885 9020165 -135954 + AluSq SINE Alu 3 282 -31 2978 243 69 12 chr1_random 9020165 9020813 -135306 + L1MB4 LINE L1 5390 6000 -180 595 228 64 18 chr1_random 9020825 9020996 -135123 + L1M4 LINE L1 4690 4868 -1278 510 283 54 0 chr1_random 9021013 9021179 -134940 + L1MB4 LINE L1 6006 6180 0 9820 199 39 26 chr1_random 9021292 9023339 -132780 + L1MA4 LINE L1 2131 4801 -1504 1789 102 68 4 chr1_random 9023339 9023627 -132492 + AluSg SINE Alu 1 305 0 9820 199 39 26 chr1_random 9023627 9024405 -131714 + L1MA4 LINE L1 4801 5567 -738 655 221 7 13 chr1_random 9024440 9024594 -131525 - L1M4 LINE L1 -6384 158 6 2513 192 16 16 chr1_random 9024735 9025245 -130874 + L1MA4 LINE L1 5620 6129 -171 366 265 34 0 chr1_random 9025268 9025385 -130734 + L1M4 LINE L1 2473 2593 -3553 5550 233 57 36 chr1_random 9025440 9027488 -128631 + L1M4 LINE L1 2700 4791 -1355 285 29 0 0 chr1_random 9027490 9027524 -128595 + (TA)n Simple_repeat Simple_repeat 1 34 0 247 328 37 60 chr1_random 9027865 9027999 -128120 + L2 LINE L2 3142 3272 0 657 163 12 12 chr1_random 9028063 9028223 -127896 + GA-rich Low_complexity Low_complexity 2 161 0 2323 155 25 12 chr1_random 9028331 9028731 -127388 + MSTA-int LTR MaLR 1247 1651 0 2060 143 89 8 chr1_random 9028756 9029128 -126991 + MSTA LTR MaLR 27 428 0 24 53 0 0 chr1_random 9029226 9029264 -126855 + AT_rich Low_complexity Low_complexity 1 38 0 31 0 0 0 chr1_random 9029381 9029412 -126707 + AT_rich Low_complexity Low_complexity 1 31 0 28 48 0 0 chr1_random 9030073 9030115 -126004 + AT_rich Low_complexity Low_complexity 1 42 0 2502 52 0 3 chr1_random 9031247 9031556 -124563 + AluY SINE Alu 1 308 -3 24 77 0 0 chr1_random 9031579 9031631 -124488 + AT_rich Low_complexity Low_complexity 1 52 0 2511 188 13 4 chr1_random 9031686 9032149 -123970 - L1MB1 LINE L1 -45 6123 5657 448 317 81 0 chr1_random 9032271 9032432 -123687 + MIR SINE MIR 86 259 -3 25 83 0 0 chr1_random 9032692 9032752 -123367 + AT_rich Low_complexity Low_complexity 1 60 0 30 27 0 0 chr1_random 9032921 9032958 -123161 + AT_rich Low_complexity Low_complexity 1 37 0 6012 101 22 19 chr1_random 9033318 9034158 -121961 - L1PA10 LINE L1 -3 6165 5315 2089 116 3 0 chr1_random 9034158 9034450 -121669 - AluSg1 SINE Alu -16 293 1 6012 101 22 19 chr1_random 9034450 9035188 -120931 - L1PA10 LINE L1 -853 5315 4580 1239 166 5 5 chr1_random 9035306 9035529 -120590 - L1P LINE L1 -1452 4694 4472 237 83 0 0 chr1_random 9035843 9035879 -120240 + (GA)n Simple_repeat Simple_repeat 1 36 0 2471 127 6 0 chr1_random 9036048 9036410 -119709 + THE1B LTR MaLR 1 364 0 1555 209 21 83 chr1_random 9036775 9037211 -118908 + MLT2D LTR ERVL 1 409 -5 1743 102 4 0 chr1_random 9039102 9039338 -116781 - AluSx SINE Alu -16 296 60 3137 76 7 0 chr1_random 9039338 9039771 -116348 - L1PA8 LINE L1 -3 6169 5734 1758 122 7 41 chr1_random 9040159 9040454 -115665 - AluSx SINE Alu -17 295 11 27 29 0 0 chr1_random 9040655 9040689 -115430 + AT_rich Low_complexity Low_complexity 1 34 0 27 49 0 0 chr1_random 9041545 9041586 -114533 + AT_rich Low_complexity Low_complexity 1 41 0 2040 136 3 0 chr1_random 9041708 9042002 -114117 + AluSq SINE Alu 1 295 -18 640 298 51 22 chr1_random 9042197 9042472 -113647 - LTR16A1 LTR ERVL -2 455 173 21 0 0 0 chr1_random 9043224 9043245 -112874 + AT_rich Low_complexity Low_complexity 1 21 0 262 258 0 0 chr1_random 9043263 9043325 -112794 - MIR SINE MIR -14 248 187 2155 125 0 0 chr1_random 9044281 9044576 -111543 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr1_random 9044581 9044603 -111516 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr1_random 9044638 9044671 -111448 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr1_random 9045247 9045272 -110847 + AT_rich Low_complexity Low_complexity 1 25 0 200 311 89 22 chr1_random 9045473 9045563 -110556 - MIR SINE MIR -102 160 65 216 67 0 0 chr1_random 9045686 9045716 -110403 + (CA)n Simple_repeat Simple_repeat 1 30 0 579 301 43 7 chr1_random 9046552 9046828 -109291 + L1ME4a LINE L1 5566 5851 -270 28 48 0 0 chr1_random 9047030 9047072 -109047 + AT_rich Low_complexity Low_complexity 1 42 0 47 73 0 0 chr1_random 9047537 9047633 -108486 + AT_rich Low_complexity Low_complexity 1 96 0 221 296 0 14 chr1_random 9047735 9047806 -108313 + GA-rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr1_random 9048228 9048251 -107868 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr1_random 9048471 9048503 -107616 + (TA)n Simple_repeat Simple_repeat 1 32 0 1162 92 0 0 chr1_random 9048633 9048786 -107333 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr1_random 9048793 9048813 -107306 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 1963 114 4 0 chr1_random 9048833 9049106 -107013 - AluSp SINE Alu -39 274 1 886 264 87 14 chr1_random 9049107 9049474 -106645 + Charlie2 DNA MER1_type 2428 2821 -41 4988 148 64 24 chr1_random 9049959 9050147 -105972 + L1MA5 LINE L1 5100 5279 -1021 189 0 0 0 chr1_random 9050147 9050168 -105951 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4988 148 64 24 chr1_random 9050168 9051111 -105008 + L1MA5 LINE L1 5279 6272 -28 8902 114 9 1 chr1_random 9051111 9052387 -103732 - HSMAR1 DNA Mariner 0 1287 1 4988 148 64 24 chr1_random 9052387 9052416 -103703 + L1MA5 LINE L1 6272 6298 -2 1098 194 34 4 chr1_random 9052907 9053144 -102975 - Zaphod DNA AcHobo -9 4022 3779 234 326 70 16 chr1_random 9054515 9054644 -101475 - L2 LINE L2 -1 3271 3136 31 0 0 0 chr1_random 9054883 9054914 -101205 + AT_rich Low_complexity Low_complexity 1 31 0 738 254 6 0 chr1_random 9056680 9056849 -99270 - FRAM SINE Alu -9 167 1 973 270 22 45 chr1_random 9057082 9057581 -98538 + MLT1H1 LTR MaLR 1 595 0 204 40 0 0 chr1_random 9057735 9057760 -98359 + (TC)n Simple_repeat Simple_repeat 2 26 0 203 200 0 0 chr1_random 9057761 9057796 -98323 + (TA)n Simple_repeat Simple_repeat 2 36 0 240 111 0 0 chr1_random 9058174 9058210 -97909 + (CA)n Simple_repeat Simple_repeat 2 37 0 29 70 0 0 chr1_random 9058760 9058817 -97302 + AT_rich Low_complexity Low_complexity 1 57 0 30 0 0 44 chr1_random 9060021 9060045 -96074 + AT_rich Low_complexity Low_complexity 1 24 -19 1893 141 3 24 chr1_random 9060045 9060343 -95776 - AluSp SINE Alu -21 292 1 30 0 0 44 chr1_random 9060343 9060363 -95756 + AT_rich Low_complexity Low_complexity 24 43 0 255 366 20 0 chr1_random 9060905 9061006 -95113 + L2 LINE L2 3209 3311 -2 782 230 304 28 chr1_random 9061091 9061482 -94637 + L2 LINE L2 2321 2819 -495 1119 325 70 22 chr1_random 9061637 9062093 -94026 + L2 LINE L2 2815 3292 -21 2226 106 3 0 chr1_random 9062093 9062385 -93734 + AluSc SINE Alu 1 293 -16 2208 144 5 35 chr1_random 9063507 9063882 -92237 - THE1B LTR MaLR 0 364 1 217 217 0 33 chr1_random 9063889 9063949 -92170 + (TAA)n Simple_repeat Simple_repeat 2 59 0 424 297 95 0 chr1_random 9064300 9064448 -91671 - MIR SINE MIR -17 245 84 26 0 0 0 chr1_random 9064612 9064638 -91481 + AT_rich Low_complexity Low_complexity 1 26 0 249 108 0 0 chr1_random 9067051 9067088 -89031 + (GAAA)n Simple_repeat Simple_repeat 3 39 0 217 49 0 49 chr1_random 9067170 9067211 -88908 + (TTG)n Simple_repeat Simple_repeat 1 39 0 203 57 86 0 chr1_random 9067428 9067463 -88656 + T-rich Low_complexity Low_complexity 4 41 0 407 143 0 12 chr1_random 9069021 9069105 -87014 + (CA)n Simple_repeat Simple_repeat 2 84 0 269 26 26 0 chr1_random 9069161 9069199 -86920 + (TG)n Simple_repeat Simple_repeat 2 40 0 180 158 0 0 chr1_random 9069989 9070027 -86092 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 2269 137 67 41 chr1_random 9070071 9070488 -85631 + MSTA LTR MaLR 1 428 0 250 121 86 0 chr1_random 9071494 9071552 -84567 + T-rich Low_complexity Low_complexity 2 64 0 193 346 120 8 chr1_random 9071619 9071752 -84367 + MIR SINE MIR 8 155 -107 12722 96 11 5 chr1_random 9072070 9073848 -82271 - HERVL-A2 LTR ERVL -3864 1790 1 3133 109 16 7 chr1_random 9073848 9074297 -81822 - MLT2A2 LTR ERVL 0 453 1 1679 127 15 4 chr1_random 9074297 9074565 -81554 + THE1C-int LTR MaLR 1310 1580 0 1583 168 80 26 chr1_random 9074567 9074918 -81201 + THE1C LTR MaLR 3 372 -3 423 0 0 0 chr1_random 9074918 9074965 -81154 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 275 19 57 19 chr1_random 9074979 9075032 -81087 + (TA)n Simple_repeat Simple_repeat 1 55 0 1857 231 79 14 chr1_random 9075032 9075461 -80658 - MLT2B1 LTR ERVL -63 457 1 4503 180 21 10 chr1_random 9075504 9076330 -79789 - ERVL-B1 LTR ERVL -235 5529 4695 1757 281 92 7 chr1_random 9076326 9076867 -79252 - ERVL-B1 LTR ERVL -5173 591 5 * 1076 246 100 27 chr1_random 9076871 9077284 -78835 - MLT2B1 LTR ERVL 0 464 1 4665 218 75 81 chr1_random 9077328 9079350 -76769 + L1MC3 LINE L1 3530 4667 -1479 1001 109 0 0 chr1_random 9079350 9079487 -76632 - AluY SINE Alu -3 308 172 4665 218 75 81 chr1_random 9079487 9080220 -75899 + L1MC3 LINE L1 4667 5403 -743 1362 219 19 41 chr1_random 9080224 9080543 -75576 + MSTD LTR MaLR 84 395 -1 603 90 9 18 chr1_random 9080544 9080655 -75464 + (TCTA)n Simple_repeat Simple_repeat 2 111 0 2239 137 5 30 chr1_random 9081699 9082072 -74047 + THE1B LTR MaLR 1 364 0 49 32 0 0 chr1_random 9083330 9083393 -72726 + AT_rich Low_complexity Low_complexity 1 63 0 1345 68 0 31 chr1_random 9083492 9083683 -72436 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr1_random 9083981 9084020 -72099 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 479 45 15 0 chr1_random 9084639 9084705 -71414 + (TA)n Simple_repeat Simple_repeat 1 67 0 261 342 20 0 chr1_random 9084746 9084856 -71263 - MIR SINE MIR -63 145 38 184 368 142 0 chr1_random 9085972 9086078 -70041 + MIR SINE MIR 17 137 -125 25 0 0 0 chr1_random 9086164 9086189 -69930 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr1_random 9086246 9086275 -69844 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr1_random 9086299 9086328 -69791 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr1_random 9087057 9087089 -69030 + (TG)n Simple_repeat Simple_repeat 1 32 0 387 0 0 0 chr1_random 9089043 9089086 -67033 + (TG)n Simple_repeat Simple_repeat 2 44 0 25 0 0 0 chr1_random 9090040 9090065 -66054 + AT_rich Low_complexity Low_complexity 1 25 0 2095 149 33 28 chr1_random 9091132 9091494 -64625 + THE1B LTR MaLR 1 364 0 1620 118 4 24 chr1_random 9091494 9091748 -64371 + THE1B-int LTR MaLR 1 249 -1331 1491 208 0 0 chr1_random 9093776 9094050 -62069 + AluJo SINE Alu 30 303 -9 582 99 0 0 chr1_random 9094053 9094134 -61985 + MER72 LTR ERV1 642 722 0 195 360 9 27 chr1_random 9094561 9094672 -61447 - MER5A DNA MER1_type -22 167 59 257 235 47 0 chr1_random 9095491 9095576 -60543 + L1MC4 LINE L1 6614 6702 -1340 1302 205 75 33 chr1_random 9095602 9095933 -60186 - MLT2C1 LTR ERVL -48 349 5 4822 190 74 56 chr1_random 9097088 9098598 -57521 - MER52A LTR ERV1 0 1755 1 2212 76 17 10 chr1_random 9099249 9099550 -56569 - AluY SINE Alu -8 303 1 402 129 0 0 chr1_random 9099566 9099651 -56468 + (CA)n Simple_repeat Simple_repeat 2 86 0 318 188 0 0 chr1_random 9099651 9099699 -56420 - FAM SINE Alu -65 110 63 393 295 8 33 chr1_random 9100120 9100242 -55877 - L2 LINE L2 0 3313 3195 * 2308 297 148 60 chr1_random 9100229 9101516 -54603 + L2 LINE L2 1033 2543 -771 231 189 0 0 chr1_random 9101516 9101553 -54566 + 5S rRNA rRNA 2 38 -83 2308 297 148 60 chr1_random 9101553 9101941 -54178 + L2 LINE L2 2543 2895 -419 360 291 39 24 chr1_random 9102179 9102306 -53813 - MLT1J2 LTR MaLR -238 212 84 2120 116 0 0 chr1_random 9102497 9102782 -53337 - AluSx SINE Alu -27 285 1 445 318 108 50 chr1_random 9102803 9103165 -52954 + MLT1J2 LTR MaLR 49 431 -19 203 300 9 27 chr1_random 9103172 9103282 -52837 + L2 LINE L2 3081 3188 -125 890 236 37 32 chr1_random 9103292 9103508 -52611 + MER58A DNA MER1_type 2 218 -6 508 256 16 8 chr1_random 9103515 9103636 -52483 + L2 LINE L2 3190 3311 -2 1023 234 120 76 chr1_random 9103655 9104139 -51980 + MLT1D LTR MaLR 1 505 0 24 32 0 0 chr1_random 9105365 9105396 -50723 + AT_rich Low_complexity Low_complexity 1 31 0 188 155 113 155 chr1_random 9105914 9106011 -50108 + MIR SINE MIR 99 191 -71 294 226 108 29 chr1_random 9106189 9106291 -49828 + MLT1A1 LTR MaLR 20 129 -236 1213 275 61 31 chr1_random 9106407 9107001 -49118 - HAL1b LINE L1 -723 625 18 356 276 33 19 chr1_random 9107286 9107496 -48623 + L1MC4a LINE L1 3275 3487 -2659 1625 171 74 28 chr1_random 9107571 9107923 -48196 + THE1C LTR MaLR 5 372 -3 7372 129 36 51 chr1_random 9107926 9109256 -46863 + THE1C-int LTR MaLR 1 1312 -268 2897 99 26 48 chr1_random 9109256 9109719 -46400 - MLT2A2 LTR ERVL 0 453 1 7372 129 36 51 chr1_random 9109719 9109732 -46387 + THE1C-int LTR MaLR 1312 1324 -256 10663 92 14 0 chr1_random 9109732 9111191 -44928 - HERVL-A2 LTR ERVL -14 5640 4161 7614 100 143 26 chr1_random 9111374 9111488 -44631 + THE1B-int LTR MaLR 162 261 -1319 207 0 0 0 chr1_random 9111488 9111511 -44608 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7614 100 143 26 chr1_random 9111511 9111523 -44596 + THE1B-int LTR MaLR 261 270 -1310 2178 73 0 0 chr1_random 9111523 9111782 -44337 - AluY SINE Alu -52 259 1 7614 100 143 26 chr1_random 9111782 9112919 -43200 + THE1B-int LTR MaLR 270 1574 -6 2074 159 33 25 chr1_random 9112928 9113287 -42832 + THE1B LTR MaLR 1 362 -2 328 233 23 0 chr1_random 9113287 9113373 -42746 + L1MC4a LINE L1 4226 4313 -1833 1681 239 64 8 chr1_random 9113429 9113928 -42191 + L1MC4a LINE L1 4557 5083 -1063 673 306 83 67 chr1_random 9114644 9115240 -40879 - L1ME4a LINE L1 -266 5855 5266 489 228 140 58 chr1_random 9115390 9115492 -40627 - MER5A DNA MER1_type -1 188 65 2509 48 3 10 chr1_random 9115492 9115786 -40333 - AluY SINE Alu -10 301 10 489 228 140 58 chr1_random 9115786 9115854 -40265 - MER5A DNA MER1_type -124 65 4 22 35 0 0 chr1_random 9115966 9115995 -40124 + AT_rich Low_complexity Low_complexity 1 29 0 447 277 107 89 chr1_random 9116031 9116378 -39741 - L1ME4a LINE L1 -2040 4106 3754 1929 117 0 0 chr1_random 9116802 9117093 -39026 + L1PA13 LINE L1 5873 6163 0 928 310 70 21 chr1_random 9117094 9117662 -38457 + L1MC4a LINE L1 5295 5890 -1918 22 0 0 0 chr1_random 9119357 9119379 -36740 + AT_rich Low_complexity Low_complexity 1 22 0 771 263 12 0 chr1_random 9119961 9120132 -35987 - MER45A DNA AcHobo -4 174 2 880 262 44 107 chr1_random 9120300 9120998 -35121 - L1MB5 LINE L1 -262 5912 5259 21 36 0 0 chr1_random 9121034 9121062 -35057 + AT_rich Low_complexity Low_complexity 1 28 0 1415 91 0 43 chr1_random 9121062 9121271 -34848 - AluY SINE Alu -2 309 110 4104 179 48 36 chr1_random 9121279 9122627 -33492 - L1MA6 LINE L1 -27 6273 4916 198 0 0 0 chr1_random 9122669 9122691 -33428 + (CCG)n Simple_repeat Simple_repeat 3 24 0 282 82 0 0 chr1_random 9122744 9122793 -33326 - Tigger3(Golem) DNA MER2_type -238 2791 2743 1327 109 44 0 chr1_random 9122796 9122979 -33140 + AluSx SINE Alu 1 191 -121 5239 123 43 1 chr1_random 9123046 9123942 -32177 - L1PA16 LINE L1 -9 6157 5225 1098 233 56 58 chr1_random 9124057 9124520 -31599 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr1_random 9124555 9124576 -31543 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr1_random 9124618 9124645 -31474 + AT_rich Low_complexity Low_complexity 1 27 0 506 326 47 7 chr1_random 9124699 9124975 -31144 - L1MC4a LINE L1 -1945 5863 5577 326 280 91 24 chr1_random 9124996 9125304 -30815 - MLT1I LTR MaLR -3 406 4 237 343 20 0 chr1_random 9125621 9125723 -30396 + MLT1I LTR MaLR 165 268 -141 432 283 33 13 chr1_random 9125983 9126135 -29984 + MIR SINE MIR 58 212 -50 246 266 16 0 chr1_random 9126519 9126583 -29536 + GA-rich Low_complexity Low_complexity 3 67 0 195 100 0 0 chr1_random 9131504 9131534 -24585 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 2123 110 0 3 chr1_random 9132035 9132317 -23802 + AluSq SINE Alu 1 281 -32 2416 194 91 64 chr1_random 9132778 9132870 -23249 + L1MA9 LINE L1 5519 5607 -705 1914 161 7 0 chr1_random 9132870 9133161 -22958 + AluSx SINE Alu 1 293 -19 2416 194 91 64 chr1_random 9133161 9133806 -22313 + L1MA9 LINE L1 5607 6276 -36 780 185 0 22 chr1_random 9134162 9134297 -21822 + AluJo/FLAM SINE Alu 2 133 -179 361 179 0 0 chr1_random 9134298 9134365 -21754 + AluJ/FRAM SINE Alu 228 294 -8 29409 99 9 10 chr1_random 9136287 9140502 -15617 - HERVL LTR ERVL -1178 4476 263 1932 179 0 10 chr1_random 9140602 9140910 -15209 + AluJb SINE Alu 1 305 -7 370 338 59 29 chr1_random 9141662 9141866 -14253 - L3 LINE CR1 -9 1568 1359 189 185 204 0 chr1_random 9142396 9142450 -13669 - MIR SINE MIR -63 145 81 2292 88 3 0 chr1_random 9142862 9143181 -12938 - AluY SINE Alu 0 311 3 3018 129 39 10 chr1_random 9143306 9143580 -12539 - Tigger3(Golem) DNA MER2_type 0 3028 2763 2019 109 84 0 chr1_random 9143580 9143865 -12254 + AluSx SINE Alu 1 309 -3 3018 129 39 10 chr1_random 9143865 9144109 -12010 - Tigger3(Golem) DNA MER2_type -265 2763 2495 1134 118 24 0 chr1_random 9146149 9146318 -9801 + THE1C LTR MaLR 1 173 -202 914 98 0 0 chr1_random 9146334 9146457 -9662 + L1MA3 LINE L1 6183 6305 0 23 0 0 0 chr1_random 9146457 9146480 -9639 + AT_rich Low_complexity Low_complexity 1 23 0 3946 78 0 0 chr1_random 9148225 9148740 -7379 + L1P LINE L1 9 523 -5623 199 194 149 15 chr1_random 9149699 9149766 -6353 + MIR SINE MIR 36 111 -151 195 266 0 62 chr1_random 9150097 9150161 -5958 + L2 LINE L2 3254 3313 0 180 252 54 72 chr1_random 9150296 9150407 -5712 - MIR3 SINE MIR -3 205 97 864 159 118 0 chr1_random 9150543 9150713 -5406 + MSTA LTR MaLR 18 207 -221 661 149 26 9 chr1_random 9150729 9150843 -5276 + MSTA LTR MaLR 311 426 0 1011 87 31 0 chr1_random 9150843 9151004 -5115 + MSTA-int LTR MaLR 1 166 -1485 * 3133 215 27 3 chr1_random 9150998 9151631 -4488 + MSTA-int LTR MaLR 289 936 -715 2210 186 9 7 chr1_random 9151648 9152099 -4020 + TAR1 Satellite telomeric 1617 2068 -43 362 126 6 72 chr1_random 9152243 9152410 -3709 + (TTAGGG)n Simple_repeat Simple_repeat 6 161 0 23 33 0 0 chr1_random 9153287 9153317 -2802 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr1_random 9154513 9154534 -1585 + GC_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr1_random 9154799 9154840 -1279 + GC_rich Low_complexity Low_complexity 1 41 0