420 189 95 0 chr13 0 74 -101873095 - AluSg/x SINE Alu -115 197 117 380 378 5 15 chr13 221 417 -101872752 - MIR SINE MIR -6 256 63 219 198 8 83 chr13 881 1002 -101872167 + T-rich Low_complexity Low_complexity 5 116 0 2367 60 10 3 chr13 2757 3055 -101870114 + AluY SINE Alu 1 300 -11 692 202 9 0 chr13 3932 4046 -101869123 + FLAM_A SINE Alu 4 118 -15 21 36 0 0 chr13 4580 4608 -101868561 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr13 4738 4763 -101868406 + AT_rich Low_complexity Low_complexity 1 25 0 1847 148 34 3 chr13 4776 5074 -101868095 - AluSc SINE Alu -2 307 1 1738 68 0 5 chr13 5084 5303 -101867866 - AluY SINE Alu -10 301 84 27 29 0 0 chr13 5473 5507 -101867662 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr13 6072 6095 -101867074 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 6343 6367 -101866802 + AT_rich Low_complexity Low_complexity 1 24 0 725 249 61 0 chr13 6453 6650 -101866519 + L1MA4 LINE L1 6088 6296 -4 21 57 0 0 chr13 7797 7832 -101865337 + AT_rich Low_complexity Low_complexity 1 35 0 217 363 61 52 chr13 8370 8698 -101864471 + L2 LINE L2 2645 2975 -339 1937 101 0 4 chr13 9620 9878 -101863291 + AluY SINE Alu 50 306 -5 263 306 82 41 chr13 10505 10701 -101862468 + MIR SINE MIR 9 212 -50 225 330 66 9 chr13 11148 11254 -101861915 - L2 LINE L2 -256 3057 2946 182 300 114 29 chr13 11246 11316 -101861853 + L2 LINE L2 3168 3243 -29 * 21 36 0 0 chr13 11510 11538 -101861631 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr13 12063 12093 -101861076 + AT_rich Low_complexity Low_complexity 1 30 0 1698 164 43 16 chr13 12095 12399 -101860770 + AluSx SINE Alu 1 312 0 353 221 307 21 chr13 13093 13233 -101859936 - MER5A DNA MER1_type -1 188 9 24 85 0 0 chr13 13925 13984 -101859185 + AT_rich Low_complexity Low_complexity 1 59 0 395 165 12 0 chr13 15390 15475 -101857694 + (TG)n Simple_repeat Simple_repeat 1 86 0 1099 58 0 0 chr13 15507 15645 -101857524 + AluY SINE Alu 161 298 -13 180 0 0 0 chr13 15649 15669 -101857500 + (TAA)n Simple_repeat Simple_repeat 2 21 0 276 306 25 19 chr13 15867 16024 -101857145 - L1ME3A LINE L1 -243 5927 5770 4195 79 8 11 chr13 16259 17231 -101855938 - L1P2 LINE L1 -338 5816 4851 339 294 71 20 chr13 17232 17484 -101855685 - L1MEc LINE L1 -2721 3494 3230 1413 244 20 11 chr13 17501 17858 -101855311 - MLT1A1 LTR MaLR 0 365 6 842 279 55 40 chr13 17871 18269 -101854900 - L1MEc LINE L1 -3021 3194 2791 1338 224 41 94 chr13 18286 18879 -101854290 - L1MEc LINE L1 -3524 2691 2196 282 56 0 0 chr13 18879 18915 -101854254 + (TA)n Simple_repeat Simple_repeat 1 36 0 1338 224 41 94 chr13 18915 19156 -101854013 - L1MEc LINE L1 -4019 2196 1944 248 231 58 70 chr13 19309 19465 -101853704 - L1MEc LINE L1 -5270 1126 973 * 931 334 84 36 chr13 19433 20122 -101853047 - L1MEc LINE L1 -5635 761 40 338 282 86 0 chr13 20336 20453 -101852716 + L2 LINE L2 3187 3313 0 368 294 88 23 chr13 20922 21228 -101851941 - L1ME4a LINE L1 -278 5843 5518 22 56 0 0 chr13 21374 21410 -101851759 + AT_rich Low_complexity Low_complexity 1 36 0 277 289 0 0 chr13 24302 24392 -101848777 + L1MC4 LINE L1 6614 6703 -1339 309 317 63 7 chr13 25198 25340 -101847829 - L2 LINE L2 -443 2871 2722 351 0 0 0 chr13 26723 26762 -101846407 + (CA)n Simple_repeat Simple_repeat 2 40 0 5597 137 54 40 chr13 26791 29489 -101843680 - SVA Other Other -518 1384 432 4568 273 37 26 chr13 29502 29627 -101843542 + L1P LINE L1 1738 1860 -4286 2045 142 0 0 chr13 29627 29922 -101843247 - AluSx SINE Alu -17 295 1 4568 273 37 26 chr13 29922 31491 -101841678 + L1P LINE L1 1860 3450 -2696 3237 204 21 3 chr13 31493 32114 -101841055 + MSTB-int LTR MaLR 1020 1651 0 1675 243 16 0 chr13 32114 32485 -101840684 + MSTB LTR MaLR 1 377 -49 2254 218 14 10 chr13 32487 32982 -101840187 + L1 LINE L1 3447 3943 -2203 1721 142 32 4 chr13 32982 33258 -101839911 + AluSx SINE Alu 2 286 -22 219 36 0 0 chr13 33258 33286 -101839883 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 334 183 0 14 chr13 33293 33364 -101839805 + L1 LINE L1 2769 2838 -3308 229 310 17 35 chr13 34137 34311 -101838858 + CT-rich Low_complexity Low_complexity 5 175 0 543 271 55 52 chr13 35546 35929 -101837240 + HSREP522 Satellite telomeric 121 504 0 304 298 166 47 chr13 36971 37206 -101835963 - L1M2 LINE L1 -5605 1244 982 321 322 71 33 chr13 37373 37584 -101835585 - L1MDb LINE L1 -5783 626 408 259 231 122 39 chr13 37601 37757 -101835412 - L1MDb LINE L1 -5787 622 454 745 324 109 30 chr13 37764 38239 -101834930 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr13 38366 38390 -101834779 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr13 38465 38487 -101834682 + AT_rich Low_complexity Low_complexity 1 22 0 2076 122 0 3 chr13 38763 39057 -101834112 - AluSx SINE Alu -19 293 1 639 241 99 0 chr13 39059 39200 -101833969 - FRAM SINE Alu -21 155 1 328 78 0 112 chr13 39900 40079 -101833090 + (CCCCCA)n Simple_repeat Simple_repeat 2 160 0 1204 139 34 29 chr13 40501 40709 -101832460 + AluJo SINE Alu 6 214 -98 550 314 41 18 chr13 40831 41051 -101832118 - MIR SINE MIR -36 226 2 225 274 113 28 chr13 41353 41459 -101831710 - L2 LINE L2 0 3272 3158 2335 92 0 3 chr13 42136 42439 -101830730 + AluSg SINE Alu 1 302 -8 387 292 30 46 chr13 42442 42582 -101830587 + MIR SINE MIR 28 160 -48 573 246 221 5 chr13 42868 43067 -101830102 + MIR SINE MIR 14 255 -7 270 284 51 60 chr13 43607 43707 -101829462 - MIR3 SINE MIR -30 178 79 214 208 0 21 chr13 44357 44405 -101828764 - MIR SINE MIR -10 252 206 353 286 29 21 chr13 44662 44802 -101828367 + MIR SINE MIR 35 175 -87 520 285 40 7 chr13 45059 45210 -101827959 + MIR3 SINE MIR 19 174 -34 222 226 19 0 chr13 45461 45514 -101827655 + L3b LINE CR1 1335 1388 -195 236 30 30 0 chr13 46187 46220 -101826949 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 692 270 0 27 chr13 46236 46421 -101826748 + MIR SINE MIR 77 256 -6 387 275 33 0 chr13 46429 46549 -101826620 - MIR SINE MIR -55 207 84 2908 155 2 14 chr13 47812 48329 -101824840 + TAR1 Satellite telomeric 1558 2068 -43 470 127 7 72 chr13 48473 48769 -101824400 + (TTAGGG)n Simple_repeat Simple_repeat 1 276 0 8774 201 12 83 chr13 48770 49505 -101823664 - L1 LINE L1 -927 5219 4434 1136 157 0 0 chr13 49505 49683 -101823486 - AluSp SINE Alu 0 313 136 8774 201 12 83 chr13 49683 51926 -101821243 - L1 LINE L1 -1712 4434 2280 424 261 27 9 chr13 52159 52270 -101820899 - MER5B DNA MER1_type -3 175 63 531 31 0 0 chr13 52272 52337 -101820832 + (TC)n Simple_repeat Simple_repeat 2 66 0 258 32 0 0 chr13 52336 52367 -101820802 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1177 244 168 66 chr13 52944 53431 -101819738 + MLT1F LTR MaLR 6 542 0 32 0 0 0 chr13 54710 54742 -101818427 + AT_rich Low_complexity Low_complexity 1 32 0 231 338 203 23 chr13 55161 55294 -101817875 + MIR3 SINE MIR 46 202 -6 189 299 75 47 chr13 55627 55734 -101817435 - L2 LINE L2 -7 3306 3197 23 68 0 0 chr13 56662 56706 -101816463 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 57342 57363 -101815806 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr13 57837 57862 -101815307 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 207 200 62 113 chr13 58320 58400 -101814769 - L2 LINE L2 0 3272 3197 526 220 55 0 chr13 58650 58759 -101814410 - MIR3 SINE MIR -12 196 82 913 266 22 0 chr13 59324 59546 -101813623 - MIR SINE MIR 0 262 36 182 357 20 31 chr13 60578 60676 -101812493 + L3b LINE CR1 1220 1316 -267 558 89 13 0 chr13 60892 60971 -101812198 + MADE1 DNA Mariner 1 80 0 2128 133 0 9 chr13 61381 61696 -101811473 + AluSx SINE Alu 1 312 0 941 203 17 0 chr13 61696 61873 -101811296 + AluSg/x SINE Alu 132 311 -1 2339 103 0 0 chr13 62258 62559 -101810610 + AluSq SINE Alu 1 301 -12 747 134 84 0 chr13 63745 63924 -101809245 + L1MC2 LINE L1 5224 5424 -743 2006 105 36 0 chr13 63924 64225 -101808944 + L1PA16 LINE L1 5842 6157 -9 4197 189 42 9 chr13 64234 65067 -101808102 + L1MC2 LINE L1 5413 6280 -64 2329 87 7 0 chr13 65067 65366 -101807803 - AluY SINE Alu -10 301 1 4197 189 42 9 chr13 65366 65428 -101807741 + L1MC2 LINE L1 6280 6338 -6 252 0 0 0 chr13 65896 65924 -101807245 + (A)n Simple_repeat Simple_repeat 1 28 0 29 0 0 0 chr13 66249 66278 -101806891 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 66302 66331 -101806838 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr13 66390 66415 -101806754 + AT_rich Low_complexity Low_complexity 1 25 0 196 359 142 0 chr13 66501 66607 -101806562 - MIR SINE MIR -125 137 17 21 0 0 0 chr13 67669 67690 -101805479 + AT_rich Low_complexity Low_complexity 1 21 0 277 322 30 10 chr13 67803 67913 -101805256 + MIR SINE MIR 38 148 -63 199 93 47 0 chr13 67954 67997 -101805172 + (TA)n Simple_repeat Simple_repeat 2 46 0 204 179 0 0 chr13 68613 68652 -101804517 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 1301 78 0 31 chr13 68949 69140 -101804029 - L1PA8 LINE L1 -1 6171 5987 50 42 0 0 chr13 69231 69302 -101803867 + AT_rich Low_complexity Low_complexity 1 71 0 2227 140 5 27 chr13 70568 70940 -101802229 - THE1B LTR MaLR 0 364 1 445 98 12 12 chr13 71986 72068 -101801101 + (TAGA)n Simple_repeat Simple_repeat 2 83 0 1362 219 19 41 chr13 72069 72388 -101800781 - MSTD LTR MaLR -1 395 84 4490 213 74 75 chr13 72392 73125 -101800044 - L1MC3 LINE L1 -743 5403 4671 815 118 0 0 chr13 73125 73264 -101799905 + AluY SINE Alu 172 310 0 4490 213 74 75 chr13 73264 75268 -101797901 - L1MC3 LINE L1 -1475 4671 3530 1078 243 100 27 chr13 75312 75725 -101797444 + MLT2B1 LTR ERVL 1 464 0 1408 285 71 7 chr13 75729 76268 -101796901 + ERVL-B1 LTR ERVL 5 591 -5084 * 4409 186 21 10 chr13 76264 77090 -101796079 + ERVL-B1 LTR ERVL 4695 5529 -235 1822 229 76 19 chr13 77132 77564 -101795605 + MLT2B1 LTR ERVL 1 457 -63 700 14 88 7 chr13 77564 77711 -101795458 + (TA)n Simple_repeat Simple_repeat 2 160 0 351 0 0 0 chr13 77725 77764 -101795405 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1582 161 79 37 chr13 77764 78119 -101795050 - THE1C LTR MaLR -3 372 3 1702 119 15 4 chr13 78121 78389 -101794780 - THE1C-int LTR MaLR 0 1580 1310 3156 107 16 7 chr13 78389 78838 -101794331 + MLT2A2 LTR ERVL 1 453 0 41267 95 11 8 chr13 78838 84471 -101788698 + HERVL-A2 LTR ERVL 1 5654 0 2415 89 3 0 chr13 84471 84784 -101788385 + MLT2A2 LTR ERVL 1 314 -139 216 0 0 0 chr13 84788 84812 -101788357 + (TA)n Simple_repeat Simple_repeat 2 25 0 339 49 0 0 chr13 84813 84854 -101788315 + MLT2A2 LTR ERVL 480 520 0 7775 129 35 53 chr13 84854 86192 -101786977 - THE1C-int LTR MaLR -266 1314 1 1547 173 74 28 chr13 86195 86547 -101786622 - THE1C LTR MaLR -3 372 5 447 277 19 19 chr13 86622 86835 -101786334 - L1MC3 LINE L1 -2659 3487 3275 1188 274 62 32 chr13 87118 87702 -101785467 + HAL1b LINE L1 12 612 -736 305 216 108 29 chr13 87832 87934 -101785235 - MLT1A1 LTR MaLR -236 129 20 24 32 0 0 chr13 88723 88754 -101784415 + AT_rich Low_complexity Low_complexity 1 31 0 401 293 115 6 chr13 89219 89393 -101783776 - MLT1L LTR MaLR -11 604 412 958 233 118 76 chr13 89979 90464 -101782705 - MLT1D LTR MaLR 0 505 1 523 252 16 8 chr13 90481 90604 -101782565 - L2 LINE L2 0 3313 3190 829 251 23 32 chr13 90611 90830 -101782339 - MER58A DNA MER1_type -6 218 2 197 290 9 37 chr13 90840 90947 -101782222 - L2 LINE L2 -125 3188 3085 405 316 108 58 chr13 90957 91337 -101781832 - MLT1J2 LTR MaLR -19 431 33 2131 109 7 0 chr13 91341 91624 -101781545 + AluSx SINE Alu 1 285 -27 347 309 39 34 chr13 91812 92094 -101781075 + MLT1J2 LTR MaLR 84 436 -14 709 259 121 17 chr13 92115 92553 -101780616 - L2 LINE L2 -357 2957 2413 231 189 0 0 chr13 92558 92595 -101780574 - 5S rRNA rRNA -83 38 2 360 194 0 0 chr13 93369 93436 -101779733 - AluJ/FRAM SINE Alu -8 294 228 733 191 0 22 chr13 93437 93573 -101779596 - AluJo/FLAM SINE Alu -179 133 1 2469 188 112 65 chr13 93928 94559 -101778610 - L1MA9 LINE L1 -36 6276 5605 1867 158 7 0 chr13 94559 94850 -101778319 - AluSx SINE Alu -19 293 1 2469 188 112 65 chr13 94850 94942 -101778227 - L1MA9 LINE L1 -707 5605 5519 2039 116 0 3 chr13 95403 95687 -101777482 - AluSq SINE Alu -30 283 1 285 204 0 0 chr13 95813 95857 -101777312 + FAM SINE Alu 63 106 -69 435 87 0 0 chr13 95857 95926 -101777243 + (TG)n Simple_repeat Simple_repeat 2 70 0 2388 70 0 10 chr13 95942 96244 -101776925 + AluY SINE Alu 1 299 -12 4972 190 73 46 chr13 96895 98406 -101774763 + MER52A LTR ERV1 1 1755 0 198 71 0 0 chr13 98986 99014 -101774155 + (TG)n Simple_repeat Simple_repeat 1 28 0 1488 170 123 62 chr13 99563 99904 -101773265 + MLT2D LTR ERVL 5 366 -48 257 235 47 0 chr13 99930 100015 -101773154 - L1MC4 LINE L1 -1340 6702 6614 182 352 32 48 chr13 100825 100950 -101772219 - MER5A DNA MER1_type -37 152 30 590 86 0 0 chr13 101360 101441 -101771728 - MER72 LTR ERV1 0 722 642 1488 208 0 0 chr13 101444 101718 -101771451 - AluJo SINE Alu -9 303 30 196 325 88 6 chr13 103934 104067 -101769102 - MIR SINE MIR -63 145 8 208 158 35 18 chr13 104135 104192 -101768977 + A-rich Low_complexity Low_complexity 2 59 0 2377 142 37 40 chr13 105197 105626 -101767543 - MSTA LTR MaLR 0 428 1 186 118 0 0 chr13 105670 105704 -101767465 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 336 24 0 0 chr13 106492 106533 -101766636 + (CA)n Simple_repeat Simple_repeat 2 42 0 248 172 0 16 chr13 106592 106656 -101766513 + (TG)n Simple_repeat Simple_repeat 2 64 0 210 143 0 0 chr13 108199 108234 -101764935 + (A)n Simple_repeat Simple_repeat 1 35 0 271 43 0 43 chr13 108447 108494 -101764675 + (CAA)n Simple_repeat Simple_repeat 1 45 0 189 147 0 0 chr13 108579 108613 -101764556 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 26 0 0 0 chr13 111031 111057 -101762112 + AT_rich Low_complexity Low_complexity 1 26 0 418 291 95 0 chr13 111177 111325 -101761844 + MIR SINE MIR 84 245 -17 209 271 86 0 chr13 111617 111687 -101761482 + MIR SINE MIR 187 262 0 2234 132 5 27 chr13 111747 112119 -101761050 + THE1B LTR MaLR 1 364 0 2189 104 3 0 chr13 113214 113502 -101759667 - AluSc SINE Alu -16 293 5 1220 329 45 11 chr13 113506 113968 -101759201 - L2 LINE L2 -21 3292 2815 707 244 311 28 chr13 114123 114512 -101758657 - L2 LINE L2 -495 2819 2321 282 341 11 0 chr13 114597 114685 -101758484 - L2 LINE L2 -2 3311 3223 23 0 0 53 chr13 115223 115243 -101757926 + AT_rich Low_complexity Low_complexity 1 20 -16 2002 124 3 20 chr13 115243 115549 -101757620 + AluSq SINE Alu 1 301 -12 23 0 0 53 chr13 115549 115566 -101757603 + AT_rich Low_complexity Low_complexity 20 36 0 26 88 0 0 chr13 116161 116229 -101756940 + AT_rich Low_complexity Low_complexity 1 68 0 31 44 0 0 chr13 116768 116813 -101756356 + AT_rich Low_complexity Low_complexity 1 45 0 219 139 0 0 chr13 117379 117415 -101755754 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 198 66 66 chr13 117782 117873 -101755296 + LTR66 LTR ERVL 344 434 -176 186 43 0 0 chr13 117874 117897 -101755272 + (GA)n Simple_repeat Simple_repeat 2 24 0 985 263 44 68 chr13 118051 118548 -101754621 - MLT1H1 LTR MaLR 0 595 1 687 266 6 0 chr13 118781 118954 -101754215 + FRAM SINE Alu 1 171 -5 36 0 0 0 chr13 120718 120754 -101752415 + AT_rich Low_complexity Low_complexity 1 36 0 219 276 102 31 chr13 120988 121115 -101752054 + L2 LINE L2 3136 3271 -1 1049 201 34 8 chr13 122484 122723 -101750446 + Zaphod DNA AcHobo 3779 4023 -8 5135 159 42 29 chr13 123213 123242 -101749927 - L1MA5 LINE L1 -2 6298 6271 9045 117 5 1 chr13 123242 124524 -101748645 + HSMAR1 DNA Mariner 1 1287 0 5135 159 42 29 chr13 124524 126219 -101746950 - L1MA5 LINE L1 -29 6271 4553 434 335 79 32 chr13 127604 128046 -101745123 + L2 LINE L2 2228 2690 -624 875 255 90 17 chr13 128514 128871 -101744298 - Charlie2 DNA MER1_type -41 2821 2439 2093 98 35 0 chr13 128883 129169 -101744000 + AluSp SINE Alu 1 296 -17 180 0 0 0 chr13 129180 129200 -101743969 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1172 85 0 0 chr13 129207 129360 -101743809 - AluSp SINE Alu -31 282 130 225 259 0 0 chr13 129476 129534 -101743635 - L1MC4 LINE L1 -1326 6716 6659 23 0 0 0 chr13 129730 129753 -101743416 + AT_rich Low_complexity Low_complexity 1 23 0 282 29 0 0 chr13 130205 130240 -101742929 + (TC)n Simple_repeat Simple_repeat 1 35 0 47 73 0 0 chr13 130358 130454 -101742715 + AT_rich Low_complexity Low_complexity 1 96 0 27 49 0 0 chr13 130945 130986 -101742183 + AT_rich Low_complexity Low_complexity 1 41 0 628 294 43 7 chr13 131188 131464 -101741705 - L1ME4a LINE L1 -270 5851 5566 216 67 0 0 chr13 132295 132325 -101740844 + (TG)n Simple_repeat Simple_repeat 1 30 0 26 30 0 0 chr13 133340 133373 -101739796 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr13 133408 133430 -101739739 + AT_rich Low_complexity Low_complexity 1 22 0 2123 130 0 0 chr13 133435 133728 -101739441 - AluSx SINE Alu -19 293 1 273 242 0 0 chr13 134680 134742 -101738427 + MIR SINE MIR 187 248 -14 21 0 0 0 chr13 134760 134781 -101738388 + AT_rich Low_complexity Low_complexity 1 21 0 617 316 43 8 chr13 135531 135787 -101737382 + LTR16A1 LTR ERVL 173 437 -20 2175 114 3 0 chr13 136000 136297 -101736872 - AluSq SINE Alu -15 298 1 27 49 0 0 chr13 136419 136460 -101736709 + AT_rich Low_complexity Low_complexity 1 41 0 26 30 0 0 chr13 137447 137480 -101735689 + AT_rich Low_complexity Low_complexity 1 33 0 1726 129 7 41 chr13 137681 137975 -101735194 + AluSx SINE Alu 11 294 -18 3183 69 7 0 chr13 138363 138797 -101734372 + L1PA8 LINE L1 5734 6170 -2 1724 106 4 0 chr13 138797 139033 -101734136 + AluSx SINE Alu 60 296 -16 240 35 0 0 chr13 139577 139606 -101733563 + (TG)n Simple_repeat Simple_repeat 2 30 0 2342 57 0 0 chr13 140416 140744 -101732425 - AluY SINE Alu 0 328 1 286 325 94 49 chr13 141861 142064 -101731105 + MIR SINE MIR 48 259 -3 327 258 0 86 chr13 142329 142457 -101730712 - MER5B DNA MER1_type -43 135 19 1823 196 52 28 chr13 142574 142961 -101730208 + MSTD LTR MaLR 1 396 0 207 139 0 0 chr13 143082 143118 -101730051 + (CAA)n Simple_repeat Simple_repeat 2 37 0 336 48 0 0 chr13 143714 143756 -101729413 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 89 0 0 chr13 144238 144294 -101728875 + AT_rich Low_complexity Low_complexity 1 56 0 4199 184 11 25 chr13 144837 145044 -101728125 + L1MA8 LINE L1 5114 5322 -969 1932 149 10 0 chr13 145044 145340 -101727829 + AluSq SINE Alu 1 299 -14 4199 184 11 25 chr13 145340 146152 -101727017 + L1MA8 LINE L1 5322 6119 -172 289 218 108 18 chr13 146183 146361 -101726808 - L1M4 LINE L1 -312 5866 5677 2411 74 0 0 chr13 146368 146664 -101726505 + AluY SINE Alu 1 296 -15 513 301 57 66 chr13 146665 147000 -101726169 + MLT1H1 LTR MaLR 20 351 -204 7131 191 6 39 chr13 147022 147476 -101725693 + L1P LINE L1 3409 3876 -2270 2049 130 3 3 chr13 147476 147783 -101725386 + AluSc SINE Alu 1 307 -2 7131 191 6 39 chr13 147783 148266 -101724903 + L1P LINE L1 3876 4373 -1773 1684 191 3 0 chr13 148266 148559 -101724610 + AluJb SINE Alu 1 294 -18 7131 191 6 39 chr13 148559 149183 -101723986 + L1P LINE L1 4373 4920 -1226 3430 72 13 4 chr13 149185 149658 -101723511 - MER11A LTR ERVK 0 1266 790 191 258 75 118 chr13 150110 150203 -101722966 + L3 LINE CR1 1439 1527 -50 2388 75 0 0 chr13 150298 150592 -101722577 + AluY SINE Alu 1 294 -17 223 269 166 28 chr13 150774 150919 -101722250 - MIR SINE MIR -47 215 51 221 209 136 64 chr13 151845 151955 -101721214 + MIR SINE MIR 89 206 -56 2288 195 45 10 chr13 152414 152906 -101720263 + LTR22 LTR ERVK 1 509 0 2441 60 0 3 chr13 152978 153278 -101719891 - AluY SINE Alu -11 300 2 1874 285 92 69 chr13 153676 154824 -101718345 + L1MCc LINE L1 19 1192 -5231 825 248 30 52 chr13 154825 154990 -101718179 + L1MCc LINE L1 2861 3028 -3913 2557 52 0 0 chr13 154990 155296 -101717873 + AluY SINE Alu 1 306 -5 825 248 30 52 chr13 155296 155612 -101717557 + L1MCc LINE L1 3028 3292 -3649 1721 232 37 34 chr13 155613 155825 -101717344 - L1M4 LINE L1 -774 5372 5162 2195 128 0 10 chr13 155825 156138 -101717031 + AluSx SINE Alu 1 310 -2 1844 118 17 37 chr13 156143 156439 -101716730 + AluSc SINE Alu 6 295 -14 1721 232 37 34 chr13 156439 156788 -101716381 - L1M4 LINE L1 -987 5159 4803 2451 219 48 76 chr13 156790 157580 -101715589 + L1MB1 LINE L1 5401 6168 0 2207 108 15 6 chr13 157642 157984 -101715185 + L1PB1 LINE L1 5804 6148 -3 23 0 0 0 chr13 157984 158007 -101715162 + AT_rich Low_complexity Low_complexity 1 23 0 863 125 0 0 chr13 158441 158569 -101714600 + AluSg/x SINE Alu 178 305 -5 1925 121 7 11 chr13 158594 158875 -101714294 + AluSx SINE Alu 1 280 -32 33 80 0 0 chr13 159964 160039 -101713130 + AT_rich Low_complexity Low_complexity 1 75 0 321 26 0 0 chr13 161487 161525 -101711644 + (CA)n Simple_repeat Simple_repeat 1 38 0 2035 128 0 0 chr13 163022 163443 -101709726 - AluSq SINE Alu 0 423 3 1136 258 31 123 chr13 163449 164003 -101709166 - MLT1E2 LTR MaLR -2 503 1 2090 103 0 7 chr13 164051 164353 -101708816 - AluY SINE Alu 0 300 1 378 269 123 15 chr13 165356 165624 -101707545 + HAL1 LINE L1 971 1267 -1240 * 812 305 79 16 chr13 165614 166182 -101706987 + HAL1 LINE L1 1036 1639 -868 755 230 8 60 chr13 166183 166418 -101706751 + HAL1 LINE L1 1531 1753 -754 227 312 8 56 chr13 166470 166595 -101706574 - L2 LINE L2 0 3313 3195 317 307 144 23 chr13 166643 166858 -101706311 + HAL1 LINE L1 2267 2507 0 203 169 0 85 chr13 166911 166970 -101706199 + GA-rich Low_complexity Low_complexity 1 54 0 319 146 0 36 chr13 167151 167206 -101705963 - MER39 LTR ERV1 0 707 655 407 319 145 0 chr13 167660 167826 -101705343 - MIR SINE MIR -34 228 39 591 367 129 23 chr13 167965 168737 -101704432 - L3 LINE CR1 -101 1476 623 30 0 0 0 chr13 168945 168975 -101704194 + AT_rich Low_complexity Low_complexity 1 30 0 231 337 127 17 chr13 168982 169163 -101704006 - L3 LINE CR1 -1050 527 327 230 0 33 0 chr13 169356 169386 -101703783 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2320 38 0 0 chr13 169400 169663 -101703506 - AluY SINE Alu -48 263 1 914 274 164 34 chr13 169796 170713 -101702456 + HAL1b LINE L1 208 1243 -105 2052 176 36 28 chr13 170716 171261 -101701908 - MLT2A2 LTR ERVL -3 551 1 554 331 60 40 chr13 171481 171880 -101701289 + LTR33 LTR ERVL 1 407 -114 1920 161 0 0 chr13 173959 174258 -101698911 - AluSx SINE Alu -13 299 1 1957 129 16 19 chr13 174613 174924 -101698245 + AluY SINE Alu 1 310 -1 306 263 110 25 chr13 175332 175450 -101697719 + MER67B LTR ERV1 32 159 -502 3854 154 82 11 chr13 175450 176144 -101697025 + LTR1B LTR ERV1 1 743 -83 474 190 111 0 chr13 176143 176266 -101696903 - MER67B LTR ERV1 -358 277 60 648 115 19 19 chr13 176266 176370 -101696799 - LTR1B LTR ERV1 0 826 723 1335 77 0 0 chr13 176370 176540 -101696629 + AluY SINE Alu 136 305 -6 10435 214 33 51 chr13 176540 180489 -101692680 + L1MC3 LINE L1 2405 6423 -1572 2368 103 20 8 chr13 180489 180840 -101692329 - THE1A LTR MaLR 0 355 1 10636 94 9 55 chr13 180840 182492 -101690677 - THE1A-int LTR MaLR 0 1580 4 329 50 0 0 chr13 182492 182532 -101690637 - THE1A LTR MaLR -315 40 1 10435 214 33 51 chr13 182532 182820 -101690349 + L1MC3 LINE L1 6420 7969 -26 2229 145 36 3 chr13 182889 183054 -101690115 - L1M1 LINE L1 -527 5773 5615 2052 134 0 0 chr13 183054 183337 -101689832 - AluSx SINE Alu -9 303 21 399 41 0 0 chr13 183339 183388 -101689781 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2229 145 36 3 chr13 183388 183611 -101689558 - L1M1 LINE L1 -685 5615 5369 2191 144 126 5 chr13 183610 184053 -101689116 + L1MA4 LINE L1 5801 6297 -3 * 183 42 0 0 chr13 185402 185426 -101687743 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1890 154 0 24 chr13 185429 185727 -101687442 - AluSx SINE Alu -21 291 1 791 244 72 9 chr13 185968 186189 -101686980 + MER46A DNA MER2_type 1 235 -1 550 252 47 65 chr13 186302 186516 -101686653 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 186516 186565 -101686604 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 186577 186598 -101686571 + AT_rich Low_complexity Low_complexity 1 21 0 2031 126 0 3 chr13 186689 186975 -101686194 + AluSq SINE Alu 1 285 -28 1134 258 14 14 chr13 187550 187911 -101685258 + L1 LINE L1 3373 3733 -2413 837 179 103 26 chr13 187907 188141 -101685028 + L1 LINE L1 4358 4609 -1537 * 1039 228 57 25 chr13 188302 188898 -101684271 + L1M4c LINE L1 2113 2729 -3653 593 219 103 0 chr13 188953 189108 -101684061 + L1M4c LINE L1 3764 3934 -2448 6010 233 17 14 chr13 189123 190605 -101682564 + L1PA15-16 LINE L1 5 1257 -5592 1199 100 11 17 chr13 190606 190786 -101682383 - THE1B LTR MaLR 0 364 186 496 182 0 0 chr13 190933 191005 -101682164 - MER58A DNA MER1_type -1 223 152 496 250 0 9 chr13 191005 191121 -101682048 - MER58A DNA MER1_type 0 115 1 367 333 57 13 chr13 191258 191417 -101681752 + L2 LINE L2 2819 2984 -329 2664 182 96 33 chr13 191651 192316 -101680853 - MER39 LTR ERV1 0 707 1 262 209 22 143 chr13 193129 193220 -101679949 - MER77 LTR ERV1 -515 90 11 225 152 22 0 chr13 193230 193276 -101679893 + HAL1 LINE L1 2327 2373 -134 3705 243 48 34 chr13 193786 195187 -101677982 + L1M4 LINE L1 3371 4791 -1355 308 24 24 0 chr13 195188 195229 -101677940 + (TA)n Simple_repeat Simple_repeat 1 42 0 250 368 40 8 chr13 195579 195704 -101677465 + L2 LINE L2 3142 3270 -2 649 163 12 17 chr13 195773 195945 -101677224 + GA-rich Low_complexity Low_complexity 3 173 0 2462 159 20 0 chr13 196052 196449 -101676720 + MSTA-int LTR MaLR 1247 1651 0 2062 145 89 8 chr13 196474 196846 -101676323 + MSTA LTR MaLR 27 428 0 791 244 72 9 chr13 197188 197409 -101675760 + MER46A DNA MER2_type 1 235 -1 550 252 47 65 chr13 197522 197736 -101675433 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 197736 197785 -101675384 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr13 197797 197818 -101675351 + AT_rich Low_complexity Low_complexity 1 21 0 1626 189 0 3 chr13 197909 198195 -101674974 + AluSq SINE Alu 1 285 -28 627 261 56 20 chr13 198770 199111 -101674058 + L1MB4 LINE L1 3373 3725 -2421 9728 119 31 44 chr13 199307 200893 -101672276 - THE1C-int LTR MaLR -14 1566 1 1547 173 74 28 chr13 200896 201248 -101671921 - THE1C LTR MaLR -3 372 5 447 277 19 19 chr13 201323 201536 -101671633 - L1M4 LINE L1 -2659 3487 3275 22 0 0 0 chr13 201861 201883 -101671286 + AT_rich Low_complexity Low_complexity 1 22 0 2773 242 75 11 chr13 201909 202235 -101670934 + L1MB4 LINE L1 4981 5285 -895 1982 125 0 4 chr13 202235 202516 -101670653 + AluSq SINE Alu 3 282 -31 2773 242 75 11 chr13 202516 203160 -101670009 + L1MB4 LINE L1 5285 6000 -180 612 232 60 12 chr13 203172 203340 -101669829 + L1M4 LINE L1 4690 4865 -1281 442 268 54 12 chr13 203360 203528 -101669641 + L1MB4 LINE L1 6006 6180 0 701 229 79 31 chr13 203641 204083 -101669086 + L1M4 LINE L1 2131 3169 -2977 225 0 0 0 chr13 205184 205209 -101667960 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2497 187 55 6 chr13 205364 205856 -101667313 - MLT2B1 LTR ERVL -4 516 1 22 35 0 0 chr13 206472 206501 -101666668 + AT_rich Low_complexity Low_complexity 1 29 0 2354 67 0 13 chr13 206664 206962 -101666207 + AluY SINE Alu 1 294 -17 1140 282 96 14 chr13 207036 207451 -101665718 + LTR16A LTR ERVL 1 449 -1 268 297 22 72 chr13 207451 207589 -101665580 + MER94 DNA DNA 4 134 0 376 313 48 24 chr13 207611 207777 -101665392 + MIR SINE MIR 63 232 -30 366 274 61 17 chr13 207773 207902 -101665267 - MIR SINE MIR -63 145 37 * 656 302 32 29 chr13 208010 208288 -101664881 - MLT1K LTR MaLR -10 578 300 845 300 91 3 chr13 208383 208703 -101664466 + L2 LINE L2 1321 1668 -1646 238 255 89 76 chr13 209466 209623 -101663546 - MIR SINE MIR -44 218 60 309 320 0 19 chr13 209697 209800 -101663369 + MLT1F LTR MaLR 18 118 -424 247 280 119 63 chr13 209854 209997 -101663172 + MLT1F1 LTR MaLR 229 379 -211 * 278 312 151 29 chr13 209972 210177 -101662992 + MLT1F1 LTR MaLR 330 559 -8 257 320 24 32 chr13 210309 210434 -101662735 + MIR SINE MIR 29 152 -110 21 89 0 0 chr13 210491 210547 -101662622 + AT_rich Low_complexity Low_complexity 1 56 0 305 319 34 8 chr13 210631 210750 -101662419 - L2 LINE L2 0 3313 3192 494 289 7 0 chr13 211788 211937 -101661232 + L1M4 LINE L1 2 151 -6391 195 313 15 30 chr13 212321 212388 -101660781 - MIR SINE MIR -15 247 182 2372 73 0 10 chr13 212668 212968 -101660201 - AluY SINE Alu -14 297 1 310 303 113 21 chr13 213393 213631 -101659538 - MIR SINE MIR 0 262 3 243 0 0 0 chr13 214649 214676 -101658493 + (A)n Simple_repeat Simple_repeat 1 27 0 24 53 0 0 chr13 265016 265054 -101608115 + AT_rich Low_complexity Low_complexity 1 38 0 1031 136 22 33 chr13 266650 266834 -101606335 - MER49 LTR ERV1 -27 896 715 390 230 70 0 chr13 267984 268084 -101605085 - MER5A DNA MER1_type -81 108 2 1798 142 26 33 chr13 269781 270084 -101603085 - AluSx SINE Alu -9 303 3 835 174 128 78 chr13 270126 270345 -101602824 - MER46A DNA MER2_type 0 236 7 188 209 0 0 chr13 271531 271574 -101601595 + MIR SINE MIR 99 141 -67 997 166 6 6 chr13 273184 273347 -101599822 - AluSx SINE Alu -149 163 1 21 36 0 0 chr13 273642 273670 -101599499 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr13 274823 274867 -101598302 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr13 275246 275267 -101597902 + AT_rich Low_complexity Low_complexity 1 21 0 208 313 0 0 chr13 275783 275831 -101597338 - L2 LINE L2 -15 3257 3210 507 123 0 0 chr13 275870 275943 -101597226 + MADE1 DNA Mariner 3 75 -5 823 219 101 6 chr13 276879 277048 -101596121 - MER5A DNA MER1_type -4 185 1 226 200 100 78 chr13 277906 277996 -101595173 + MARNA DNA Mariner 15 106 -480 1432 222 134 43 chr13 278338 279039 -101594130 + LTR1B LTR ERV1 137 826 0 431 257 9 0 chr13 279295 279408 -101593761 - LTR43 LTR ERV1 -306 296 183 1999 98 8 4 chr13 279999 280264 -101592905 - AluSq SINE Alu -1 312 47 1807 180 53 6 chr13 280644 280983 -101592186 - MLT1A1 LTR MaLR 0 365 11 1241 133 5 27 chr13 281101 281289 -101591880 - AluSg/x SINE Alu -20 292 109 1930 215 81 26 chr13 282134 282627 -101590542 + L1MB8 LINE L1 5653 6172 -6 366 318 54 7 chr13 283699 283847 -101589322 + L2 LINE L2 2730 2884 -430 24 32 0 0 chr13 284169 284200 -101588969 + AT_rich Low_complexity Low_complexity 1 31 0 969 234 48 18 chr13 284557 284701 -101588468 - L1MB7 LINE L1 0 6184 6041 345 239 27 82 chr13 284701 284885 -101588284 - L1MD3 LINE L1 -1960 6035 5862 3758 76 46 32 chr13 285359 285884 -101587285 - SVA Other Other -5 1381 850 744 239 198 25 chr13 286011 286254 -101586915 - THE1-int LTR MaLR -389 1191 907 842 231 82 12 chr13 286269 286524 -101586645 + MSTA LTR MaLR 95 367 -61 483 183 148 49 chr13 286567 286709 -101586460 - MST-int LTR MaLR -990 661 506 * 4918 232 56 52 chr13 286706 288210 -101584959 + MSTA-int LTR MaLR 28 1537 -114 5246 238 61 35 chr13 288310 289801 -101583368 - MSTA-int LTR MaLR -96 1555 26 458 227 167 8 chr13 289797 289929 -101583240 + MST-int LTR MaLR 507 659 -992 * 1012 235 56 8 chr13 289965 290233 -101582936 - MSTA LTR MaLR -52 376 96 399 232 11 11 chr13 290253 290348 -101582821 + THE1-int LTR MaLR 907 1001 -579 598 164 0 4 chr13 291147 291315 -101581854 + HSAT5 Satellite Satellite 1 167 -3 305 182 34 57 chr13 291535 291623 -101581546 + HSAT5 Satellite Satellite 1 86 0 334 218 12 6 chr13 291854 291960 -101581209 + HSAT5 Satellite Satellite 1 106 -7 * 472 272 26 9 chr13 291944 292096 -101581073 - MSTA LTR MaLR -141 285 133 738 242 189 20 chr13 292143 292387 -101580782 + THE1-int LTR MaLR 907 1191 -389 * 3267 306 41 21 chr13 292375 293358 -101579811 - MSTA-int LTR MaLR -616 1035 34 332 244 170 7 chr13 293358 293493 -101579676 + MST-int LTR MaLR 503 659 -992 947 267 49 8 chr13 293531 293797 -101579372 - MSTA LTR MaLR -54 374 98 686 242 186 22 chr13 293824 294055 -101579114 + THE1-int LTR MaLR 907 1175 -405 231 236 18 0 chr13 294057 294112 -101579057 - THE1-int LTR MaLR -614 966 911 555 135 21 10 chr13 294197 294293 -101578876 - MSTA LTR MaLR -331 97 1 1434 196 6 44 chr13 294293 294634 -101578535 - MSTA-int LTR MaLR 0 1651 1324 277 214 114 0 chr13 294634 294704 -101578465 - MSTA LTR MaLR -248 180 103 701 186 0 70 chr13 294822 294994 -101578175 - MSTA-int LTR MaLR -174 1477 1318 309 226 32 0 chr13 295001 295063 -101578106 - MSTA LTR MaLR -269 159 96 469 214 20 0 chr13 295139 295237 -101577932 - MSTA LTR MaLR -328 100 1 5987 222 53 38 chr13 295237 296831 -101576338 - MSTA-int LTR MaLR 0 1651 34 646 238 191 26 chr13 297072 297303 -101575866 - MSTA-int LTR MaLR -405 1175 907 1073 231 56 7 chr13 297325 297594 -101575575 + MSTA LTR MaLR 95 376 -52 508 240 32 26 chr13 297611 297765 -101575404 - MSTA-int LTR MaLR -963 617 463 * 5556 217 53 47 chr13 297760 299306 -101573863 + MSTA-int LTR MaLR 28 1583 -68 343 159 0 48 chr13 299378 299441 -101573728 - MSTA LTR MaLR -52 376 317 388 158 26 0 chr13 299443 299519 -101573650 + MSTA-int LTR MaLR 1574 1651 0 365 263 10 0 chr13 299519 299618 -101573551 + MSTA LTR MaLR 1 100 -328 1849 222 56 15 chr13 299861 300762 -101572407 - L1M4 LINE L1 -464 5714 4771 697 321 77 10 chr13 302104 302483 -101570686 - MLT1G1 LTR MaLR -34 561 79 1255 183 73 0 chr13 302520 302794 -101570375 - L1MA5 LINE L1 -6 6294 6001 1017 236 31 12 chr13 302861 303120 -101570049 - AluJo SINE Alu -48 264 1 3067 212 32 15 chr13 303121 304079 -101569090 - L1MA5 LINE L1 -354 5946 4969 24 0 0 0 chr13 304510 304534 -101568635 + AT_rich Low_complexity Low_complexity 1 24 0 372 267 0 0 chr13 305640 305741 -101567428 - L1MA9 LINE L1 -49 6263 6163 425 171 0 0 chr13 306682 306758 -101566411 - AluS SINE Alu -12 298 223 1801 114 35 4 chr13 306858 307112 -101566057 - AluSg SINE Alu -48 262 1 21 36 0 0 chr13 307167 307195 -101565974 + AT_rich Low_complexity Low_complexity 1 28 0 881 160 0 0 chr13 307195 307320 -101565849 - FLAM_C SINE Alu -18 125 1 306 366 0 7 chr13 307902 308044 -101565125 - HERV16 LTR ERVL -4335 661 521 2218 105 3 7 chr13 308104 308408 -101564761 - AluSp SINE Alu 0 313 11 1587 184 153 22 chr13 308660 309073 -101564096 - MLT1C LTR MaLR 0 467 1 572 257 161 8 chr13 309257 309506 -101563663 - LTR16A1 LTR ERVL -3 454 168 228 258 30 0 chr13 310496 310562 -101562607 - MIR SINE MIR -131 131 64 21 0 0 0 chr13 310562 310583 -101562586 + AT_rich Low_complexity Low_complexity 1 21 0 200 236 32 38 chr13 311869 312026 -101561143 + (TTATA)n Simple_repeat Simple_repeat 4 159 0 4583 194 31 28 chr13 312875 313763 -101559406 - MER54A LTR ERVL -1 900 10 722 164 0 0 chr13 314594 314710 -101558459 + AluJb SINE Alu 2 117 -195 1512 314 77 33 chr13 315098 316202 -101556967 + L2 LINE L2 2157 3305 -8 2208 113 0 3 chr13 316347 316640 -101556529 + AluSg SINE Alu 1 292 -18 7274 58 7 0 chr13 317062 318753 -101554416 - L1PA6 LINE L1 -5 6149 4451 3987 120 43 52 chr13 318880 319802 -101553367 - MER11A LTR ERVK -326 910 1 28805 114 17 11 chr13 319803 324103 -101549066 - L1P LINE L1 -1809 4337 13 1596 231 47 42 chr13 324218 324812 -101548357 + L1M4 LINE L1 4629 5225 -921 1241 125 11 0 chr13 324812 324996 -101548173 + AluSg/x SINE Alu 117 302 -10 419 233 35 0 chr13 325080 325252 -101547917 + (TA)n Simple_repeat Simple_repeat 2 179 0 2059 134 10 3 chr13 326895 327201 -101545968 - AluJb SINE Alu -1 311 4 363 235 0 69 chr13 327507 327609 -101545560 + L2 LINE L2 3173 3267 -46 2185 119 0 0 chr13 327645 327948 -101545221 + AluSx SINE Alu 1 303 -9 263 240 80 0 chr13 327978 328053 -101545116 - MIR SINE MIR -70 192 112 189 0 0 0 chr13 328087 328108 -101545061 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1679 169 34 7 chr13 328195 328490 -101544679 + AluJb SINE Alu 1 303 -9 2162 114 0 3 chr13 328802 329101 -101544068 - AluSp SINE Alu -15 298 1 245 27 54 0 chr13 329104 329141 -101544028 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 286 128 85 0 chr13 329144 329191 -101543978 - AluJ/FRAM SINE Alu -23 279 229 28 79 0 0 chr13 331296 331359 -101541810 + AT_rich Low_complexity Low_complexity 1 63 0 389 20 20 0 chr13 331536 331586 -101541583 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 963 74 8 8 chr13 331586 331702 -101541467 - AluY SINE Alu -195 116 1 317 286 63 17 chr13 335805 335980 -101537189 - HERV16 LTR ERVL -2033 2963 2781 492 196 21 0 chr13 337568 337665 -101535504 - MSTA LTR MaLR -329 99 1 4380 232 76 26 chr13 337665 338831 -101534338 - MSTA-int LTR MaLR 0 1651 427 742 235 8 10 chr13 338829 339033 -101534136 - MSTA-int LTR MaLR -1270 101 28 * 606 173 156 10 chr13 339029 339180 -101533989 + MSTA-int LTR MaLR 466 661 -963 * 851 246 52 48 chr13 339188 339497 -101533672 - MSTA LTR MaLR -43 385 76 388 241 12 0 chr13 339501 339584 -101533585 + MSTA-int LTR MaLR 907 990 -590 2056 135 3 0 chr13 339942 340230 -101532939 - AluSc SINE Alu -20 289 1 21 0 0 0 chr13 340591 340612 -101532557 + AT_rich Low_complexity Low_complexity 1 21 0 227 247 25 49 chr13 341236 341317 -101531852 + L2 LINE L2 2967 3045 -227 1192 214 231 18 chr13 342175 342633 -101530536 - L1MC4 LINE L1 -668 7374 6819 270 226 37 48 chr13 343235 343379 -101529790 - HSAT5 Satellite Satellite 0 142 1 273 238 12 18 chr13 343647 343743 -101529426 - HSAT5 Satellite Satellite 0 95 1 265 258 0 15 chr13 344155 344221 -101528948 + (CA)n Simple_repeat Simple_repeat 2 66 0 2087 108 87 44 chr13 344448 344884 -101528285 - SN5 Other centromeric 0 455 1 1084 242 4 8 chr13 345404 345668 -101527501 + MSTA-int LTR MaLR 1389 1651 0 545 146 21 10 chr13 345668 345764 -101527405 + MSTA LTR MaLR 1 97 -331 282 214 18 0 chr13 345849 345905 -101527264 + THE1-int LTR MaLR 911 967 -613 * 700 247 169 50 chr13 345858 346137 -101527032 - THE1-int LTR MaLR -362 1218 907 969 221 62 28 chr13 346141 346430 -101526739 + MSTA LTR MaLR 76 374 -54 317 255 152 9 chr13 346448 346603 -101526566 - MST-int LTR MaLR -963 661 462 6001 233 52 22 chr13 346603 348173 -101524996 + MSTA-int LTR MaLR 34 1651 0 396 221 11 0 chr13 348175 348270 -101524899 + MSTA LTR MaLR 5 100 -328 460 167 23 5 chr13 348426 348530 -101524639 - MSTA LTR MaLR -262 113 3 1251 192 25 47 chr13 348532 348850 -101524319 - MSTA-int LTR MaLR 0 1651 1341 250 236 0 28 chr13 349005 349077 -101524092 - MSTA LTR MaLR -331 97 28 517 168 21 0 chr13 349237 349332 -101523837 - MSTA LTR MaLR -331 97 1 1376 219 3 40 chr13 349332 349679 -101523490 - MSTA-int LTR MaLR 0 1651 1318 279 256 24 37 chr13 349686 349768 -101523401 - MSTA LTR MaLR -273 155 75 431 235 20 0 chr13 349820 349918 -101523251 - MSTA LTR MaLR -328 100 1 5749 224 55 39 chr13 349918 351510 -101521659 - MSTA-int LTR MaLR 0 1651 34 268 294 37 9 chr13 351514 351623 -101521546 + THE1-int LTR MaLR 466 577 -1003 1018 229 67 7 chr13 351665 351949 -101521220 - MSTA LTR MaLR -52 376 76 747 179 191 56 chr13 351953 352204 -101520965 + THE1-int LTR MaLR 907 1191 -389 315 179 18 0 chr13 352192 352248 -101520921 - THE1-int LTR MaLR -613 967 911 * 3871 96 27 4 chr13 352319 352869 -101520300 + LTR6A LTR ERV1 1 563 -1 419 200 21 0 chr13 352900 352995 -101520174 - MSTA LTR MaLR -331 97 1 1280 198 43 49 chr13 352995 353324 -101519845 - MSTA-int LTR MaLR 0 1651 1325 300 248 124 9 chr13 353324 353429 -101519740 - MSTA LTR MaLR -252 176 60 425 247 21 0 chr13 353478 353575 -101519594 - MSTA LTR MaLR -329 99 1 6034 231 65 19 chr13 353575 355125 -101518044 - MSTA-int LTR MaLR 0 1651 28 593 180 156 10 chr13 355121 355272 -101517897 + MST-int LTR MaLR 466 661 -963 * 752 257 49 53 chr13 355280 355564 -101517605 - MSTA LTR MaLR -43 385 103 553 252 208 22 chr13 355705 355931 -101517238 - THE1-int LTR MaLR -406 1174 907 960 247 52 11 chr13 355949 356220 -101516949 + MSTA LTR MaLR 95 376 -52 476 207 164 14 chr13 356248 356388 -101516781 - MST-int LTR MaLR -984 667 507 4628 244 68 25 chr13 356390 357692 -101515477 + MSTA-int LTR MaLR 32 1389 -262 505 216 9 0 chr13 357688 357804 -101515365 + MSTA-int LTR MaLR 1535 1651 0 * 426 189 135 90 chr13 357804 357915 -101515254 + MSTA LTR MaLR 1 116 -248 1970 103 11 0 chr13 357944 358215 -101514954 + LTR6A LTR ERV1 136 409 -155 380 250 50 25 chr13 358315 358435 -101514734 - MSTA LTR MaLR -230 198 76 461 235 30 24 chr13 358439 358672 -101514497 + THE1-int LTR MaLR 907 1187 -393 510 156 21 10 chr13 358805 358901 -101514268 - MSTA LTR MaLR -331 97 1 1383 220 3 41 chr13 358901 359242 -101513927 - MSTA-int LTR MaLR 0 1651 1324 347 213 148 9 chr13 359242 359350 -101513819 - MSTA LTR MaLR -248 180 58 394 253 10 0 chr13 359395 359494 -101513675 - MSTA LTR MaLR -328 100 1 352 160 40 0 chr13 359494 359569 -101513600 - MSTA-int LTR MaLR 0 1651 1574 341 159 0 48 chr13 359571 359634 -101513535 + MSTA LTR MaLR 317 376 -52 258 128 0 0 chr13 359668 359707 -101513462 - MSTA-int LTR MaLR -990 661 623 5551 224 48 48 chr13 359707 361263 -101511906 - MSTA-int LTR MaLR -68 1583 28 508 237 33 26 chr13 361258 361410 -101511759 + THE1-int LTR MaLR 463 615 -965 * 1045 247 56 4 chr13 361429 361696 -101511473 - MSTA LTR MaLR -52 376 96 686 225 191 26 chr13 361720 361951 -101511218 + THE1-int LTR MaLR 907 1175 -405 251 164 36 18 chr13 361953 362008 -101511161 - THE1-int LTR MaLR -614 966 911 242 293 84 42 chr13 364945 365141 -101508028 + MIR3 SINE MIR 4 208 -54 1068 270 22 3 chr13 365477 365799 -101507370 + LTR16C LTR ERVL 135 462 -29 369 345 7 0 chr13 365901 366040 -101507129 - MIR SINE MIR -100 162 23 443 330 133 0 chr13 366184 366402 -101506767 - MIR SINE MIR -1 261 15 378 330 112 8 chr13 367803 368070 -101505099 + L2 LINE L2 2995 3289 -24 1633 196 181 8 chr13 368112 368504 -101504665 + LTR46 LTR ERV1 1 460 0 299 299 140 0 chr13 368505 368612 -101504557 - MIR3 SINE MIR -51 157 36 685 281 57 69 chr13 369020 369457 -101503712 + MLT1K LTR MaLR 76 586 -2 551 153 276 0 chr13 369701 369799 -101503370 - FLAM_C SINE Alu -17 126 2 255 79 0 0 chr13 369866 369904 -101503265 + (TG)n Simple_repeat Simple_repeat 1 38 0 232 309 0 24 chr13 369917 370001 -101503168 + MIR SINE MIR 161 242 -20 200 216 162 0 chr13 370009 370083 -101503086 - L3 LINE CR1 -1430 147 62 21 89 0 0 chr13 370396 370452 -101502717 + AT_rich Low_complexity Low_complexity 1 56 0 1383 191 52 42 chr13 370861 371149 -101502020 + AluJo SINE Alu 1 291 -11 24 53 0 0 chr13 371149 371187 -101501982 + AT_rich Low_complexity Low_complexity 1 38 0 3436 134 20 2 chr13 372879 373387 -101499782 - L1PB1 LINE L1 -4 6147 5631 234 0 0 0 chr13 374283 374309 -101498860 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 191 0 0 chr13 374309 374435 -101498734 + AluSg/x SINE Alu 135 260 -50 216 0 0 0 chr13 374435 374459 -101498710 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 526 338 102 3 chr13 374478 374762 -101498407 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 374849 374961 -101498208 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1764 191 23 22 chr13 374962 375336 -101497833 - MLT2C1 LTR ERVL -20 444 1 301 330 71 9 chr13 376520 376632 -101496537 + L2 LINE L2 3151 3269 -3 453 241 54 30 chr13 377203 377369 -101495800 + L1ME4a LINE L1 5950 6119 -2 2011 132 0 14 chr13 377370 377686 -101495483 - AluSx SINE Alu 0 312 1 1992 135 10 0 chr13 378465 378753 -101494416 + AluSg SINE Alu 1 291 -19 8891 114 31 22 chr13 378789 379578 -101493591 - HSMAR1 DNA Mariner 0 1287 481 2138 128 0 0 chr13 379578 379875 -101493294 + AluSx SINE Alu 1 297 -15 8891 114 31 22 chr13 379875 380361 -101492808 - HSMAR1 DNA Mariner -806 481 1 28 61 0 0 chr13 380495 380544 -101492625 + AT_rich Low_complexity Low_complexity 1 49 0 2387 97 0 3 chr13 380596 380906 -101492263 - AluSc SINE Alu 0 309 1 1563 156 52 0 chr13 380961 381262 -101491907 - AluSx SINE Alu 0 315 1 860 211 12 0 chr13 381488 381676 -101491493 - AluSg/x SINE Alu 0 303 114 968 150 36 74 chr13 381809 381923 -101491246 - L1PA16 LINE L1 0 6154 6037 1629 187 3 0 chr13 381923 382217 -101490952 - AluJb SINE Alu -13 299 5 968 150 36 74 chr13 382217 382397 -101490772 - L1PA16 LINE L1 -117 6037 5806 758 143 59 0 chr13 382769 382888 -101490281 - AluJb SINE Alu -185 127 2 745 125 29 0 chr13 383130 383234 -101489935 - U6 snRNA snRNA 0 107 1 4844 213 57 29 chr13 383264 384491 -101488678 - Charlie1a DNA MER1_type -193 1262 1 391 272 32 38 chr13 384790 384948 -101488221 - HERV16 LTR ERVL -4479 517 361 239 54 27 0 chr13 385098 385135 -101488034 + (TA)n Simple_repeat Simple_repeat 2 39 0 630 303 56 8 chr13 385324 385558 -101487611 - LTR16C LTR ERVL -8 483 239 568 276 129 42 chr13 385868 386545 -101486624 + L1ME LINE L1 4955 5704 -460 559 274 88 0 chr13 386603 386812 -101486357 + MIR SINE MIR 28 255 -7 266 241 0 76 chr13 386934 387013 -101486156 + MIR SINE MIR 153 225 -37 855 114 8 0 chr13 387111 387242 -101485927 + L1P4 LINE L1 5317 5448 -715 402 255 84 60 chr13 387257 388046 -101485123 + HSREP522 Satellite telomeric 1 807 -123 204 182 15 61 chr13 388451 388517 -101484652 + (TTGGGG)n Simple_repeat Simple_repeat 2 64 0 205 177 30 79 chr13 389850 390301 -101482868 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 302 191 48 34 chr13 389913 389925 -101483244 + (TA)n Simple_repeat Simple_repeat 2 12 -138 2032 125 3 0 chr13 389925 390213 -101482956 - AluSx SINE Alu -23 289 1 302 191 48 34 chr13 390213 390347 -101482822 + (TA)n Simple_repeat Simple_repeat 12 150 0 25 65 0 0 chr13 391283 391329 -101481840 + AT_rich Low_complexity Low_complexity 1 46 0 207 271 0 0 chr13 391406 391454 -101481715 - L2 LINE L2 -1 3271 3224 194 246 0 49 chr13 391856 391917 -101481252 - L2 LINE L2 -12 3301 3244 459 239 63 28 chr13 391917 392059 -101481110 - MER104 DNA Tc2 0 180 34 1804 169 0 7 chr13 392159 392455 -101480714 + AluJo SINE Alu 1 294 -18 452 280 168 19 chr13 392459 392678 -101480491 - MIR SINE MIR -11 251 4 219 282 122 53 chr13 394360 394491 -101478678 - MER5A DNA MER1_type 0 189 50 334 209 305 38 chr13 394496 394601 -101478568 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr13 395240 395275 -101477894 + AT_rich Low_complexity Low_complexity 1 35 0 392 275 83 21 chr13 395501 395736 -101477433 + MER102b DNA MER1_type 81 340 -1 21 0 0 0 chr13 396116 396137 -101477032 + AT_rich Low_complexity Low_complexity 1 21 0 198 266 193 28 chr13 396799 396908 -101476261 - L2 LINE L2 0 3272 3146 2189 115 0 0 chr13 397607 397894 -101475275 - AluSc SINE Alu -22 287 1 213 255 0 0 chr13 397928 397975 -101475194 + (TTA)n Simple_repeat Simple_repeat 2 48 0 617 158 167 0 chr13 398830 398944 -101474225 - FLAM_C SINE Alu 0 133 1 622 208 0 0 chr13 399892 399998 -101473171 + U6 snRNA snRNA 1 106 -1 191 325 91 26 chr13 400621 400775 -101472394 - MIR SINE MIR -42 220 57 22 0 0 0 chr13 401262 401284 -101471885 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr13 401512 401554 -101471615 + AT_rich Low_complexity Low_complexity 1 42 0 2041 195 35 16 chr13 401554 401980 -101471189 - Tigger2a DNA MER2_type 0 434 1 206 139 47 0 chr13 402232 402275 -101470894 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 847 187 0 0 chr13 402602 402741 -101470428 - FAM SINE Alu -25 160 22 1353 167 3 110 chr13 402776 403111 -101470058 - AluJb SINE Alu -13 299 1 2778 190 48 9 chr13 403475 404016 -101469153 - MER68 LTR ERV1 0 562 1 27 0 0 0 chr13 404419 404446 -101468723 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 7 10 chr13 404569 404879 -101468290 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 404879 404905 -101468264 + AT_rich Low_complexity Low_complexity 1 26 0 1918 150 17 0 chr13 404939 405233 -101467936 - AluSq SINE Alu -14 299 1 2645 155 0 39 chr13 405243 405701 -101467468 - L1MC1 LINE L1 0 6333 5894 836 128 53 0 chr13 406705 406838 -101466331 - Tigger7 DNA MER2_type 0 2587 2448 692 165 44 25 chr13 406839 406997 -101466172 + MER21A LTR ERV1 747 907 -24 629 236 0 24 chr13 407439 407562 -101465607 - FLAM_A SINE Alu -17 125 6 274 332 74 39 chr13 407718 407947 -101465222 - MIR SINE MIR -6 256 20 736 202 0 24 chr13 410960 411084 -101462085 + FLAM_A SINE Alu 1 121 -12 2051 125 0 39 chr13 411320 411625 -101461544 + AluSx SINE Alu 1 293 -19 1245 207 30 54 chr13 411800 412095 -101461074 - AluJb SINE Alu -12 300 13 21 89 0 0 chr13 412191 412247 -101460922 + AT_rich Low_complexity Low_complexity 1 56 0 6731 36 0 0 chr13 412468 413246 -101459923 - L1PA5 LINE L1 -1 6153 5376 213 267 40 0 chr13 413407 413482 -101459687 - MIR SINE MIR -108 154 77 1449 209 57 29 chr13 413509 413859 -101459310 - MER45B DNA AcHobo -236 804 445 868 94 75 13 chr13 414541 414849 -101458320 - LTR7 LTR ERV1 0 450 1 184 307 45 23 chr13 415069 415157 -101458012 - MIR SINE MIR -115 147 58 2065 171 22 16 chr13 417667 418030 -101455139 + MLT1A1 LTR MaLR 1 365 0 283 323 58 74 chr13 419022 419211 -101453958 - MIR SINE MIR -52 210 25 629 207 30 61 chr13 421529 421572 -101451597 - MIR SINE MIR -97 165 122 4582 119 32 32 chr13 421572 422263 -101450906 + LTR8 LTR ERV1 1 691 0 629 207 30 61 chr13 422263 422383 -101450786 - MIR SINE MIR -140 122 7 1658 88 0 0 chr13 422809 423024 -101450145 + L1PA6 LINE L1 5940 6154 0 415 306 48 61 chr13 423257 423486 -101449683 + MIR SINE MIR 11 236 -26 796 216 55 31 chr13 423588 423842 -101449327 + LTR37B LTR ERV1 209 468 0 281 248 40 50 chr13 424209 424310 -101448859 - MLT2E LTR ERVL -497 131 32 437 255 51 83 chr13 424569 424785 -101448384 + MIR SINE MIR 1 209 -53 2191 110 7 0 chr13 424916 425206 -101447963 + AluSq SINE Alu 1 292 -21 2430 87 10 0 chr13 425444 425754 -101447415 + AluSp SINE Alu 1 313 0 1409 176 45 84 chr13 425992 426351 -101446818 + MLT1A1 LTR MaLR 21 365 0 1076 94 6 17 chr13 426662 426842 -101446327 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1665 205 0 3 chr13 426855 427157 -101446012 - AluJo SINE Alu -11 301 1 2767 139 59 12 chr13 427329 427818 -101445351 + L1MB2 LINE L1 5658 6169 -2 29 28 0 0 chr13 428601 428637 -101444532 + AT_rich Low_complexity Low_complexity 1 36 0 7349 17 0 1 chr13 428966 429797 -101443372 - L1PA2 LINE L1 0 6155 5326 4569 196 52 13 chr13 429802 430873 -101442296 - L1 LINE L1 -1524 6041 4929 234 128 0 0 chr13 430877 430916 -101442253 + (TCCC)n Simple_repeat Simple_repeat 3 41 0 * 683 164 30 12 chr13 430910 431075 -101442094 + CT-rich Low_complexity Low_complexity 3 170 0 1190 178 4 35 chr13 431075 431339 -101441830 - AluJo SINE Alu 0 343 87 4313 257 43 15 chr13 431339 433547 -101439622 - L1 LINE L1 -2753 4812 2513 2616 11 0 0 chr13 433547 433829 -101439340 - AluYb8 SINE Alu -4 314 33 4313 257 43 15 chr13 433829 434396 -101438773 - L1 LINE L1 -5052 2513 1963 481 335 55 24 chr13 434593 434847 -101438322 - L1 LINE L1 -4890 1675 1414 411 248 0 19 chr13 434912 435017 -101438152 - L1 LINE L1 -6921 568 466 234 327 47 0 chr13 435164 435271 -101437898 + MIR SINE MIR 80 191 -71 25 65 0 0 chr13 435393 435439 -101437730 + AT_rich Low_complexity Low_complexity 1 46 0 1445 219 47 53 chr13 435716 436251 -101436918 - MER67C LTR ERV1 0 514 22 389 295 83 100 chr13 438036 438588 -101434581 + L1MB4 LINE L1 786 1328 -5521 1257 192 0 48 chr13 440195 440466 -101432703 - AluJb SINE Alu -50 262 5 512 240 89 34 chr13 440468 440647 -101432522 - MLT1D LTR MaLR -312 193 5 660 261 61 0 chr13 441147 441312 -101431857 - MIR SINE MIR -72 190 16 243 152 0 0 chr13 441403 441449 -101431720 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 2201 143 103 137 chr13 442578 443171 -101429998 + LTR4 LTR ERV1 24 596 0 1565 210 10 16 chr13 443213 443527 -101429642 - AluJo SINE Alu 0 312 1 338 243 18 72 chr13 443569 443680 -101429489 - L1ME4a LINE L1 -3 6118 6014 224 228 0 0 chr13 443729 443786 -101429383 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 239 324 27 47 chr13 443797 443945 -101429224 - MIR SINE MIR -1 261 117 522 257 47 65 chr13 444152 444366 -101428803 + MIR SINE MIR 36 245 -17 240 184 0 0 chr13 444366 444415 -101428754 + (TG)n Simple_repeat Simple_repeat 1 49 0 2046 115 0 4 chr13 444545 444823 -101428346 + AluSq SINE Alu 9 285 -28 1184 258 14 14 chr13 445398 445759 -101427410 + L1MB4 LINE L1 4075 4435 -2413 * 2793 244 76 12 chr13 445749 446673 -101426496 + L1MB4 LINE L1 5054 6104 -778 2049 124 0 0 chr13 446673 446956 -101426213 + AluSq SINE Alu 3 285 -28 2793 244 76 12 chr13 446956 447597 -101425572 + L1MB4 LINE L1 6104 6702 -180 608 238 60 12 chr13 447609 447777 -101425392 + L1M4 LINE L1 4690 4865 -1281 517 271 54 0 chr13 447797 447963 -101425206 + L1MB4 LINE L1 6708 6882 0 9974 196 44 27 chr13 448073 450116 -101423053 + L1MA4 LINE L1 2128 4808 -1492 2121 101 18 4 chr13 450116 450417 -101422752 + AluSg SINE Alu 1 305 0 9974 196 44 27 chr13 450417 451191 -101421978 + L1MA4 LINE L1 4808 5567 -733 666 225 5 52 chr13 451189 451380 -101421789 - L1M4 LINE L1 -6355 187 6 * 2717 184 4 2 chr13 451521 452006 -101421163 + L1MA4 LINE L1 5620 6105 -195 398 276 94 0 chr13 452064 452234 -101420935 + L1M4 LINE L1 2473 2658 -3488 5617 235 64 28 chr13 452239 454258 -101418911 + L1M4 LINE L1 2700 4791 -1355 311 0 26 0 chr13 454259 454298 -101418871 + (TA)n Simple_repeat Simple_repeat 1 40 0 250 368 40 8 chr13 454650 454775 -101418394 + L2 LINE L2 3142 3270 -2 594 202 17 6 chr13 454863 455036 -101418133 + GA-rich Low_complexity Low_complexity 3 177 0 2474 156 20 0 chr13 455112 455509 -101417660 + MSTA-int LTR MaLR 1247 1651 0 2062 145 89 8 chr13 455534 455906 -101417263 + MSTA LTR MaLR 27 428 0 24 53 0 0 chr13 456004 456042 -101417127 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr13 456159 456189 -101416980 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr13 456839 456880 -101416289 + AT_rich Low_complexity Low_complexity 1 41 0 2786 13 0 3 chr13 457705 458016 -101415153 + AluYa5 SINE Alu 1 310 -1 2509 65 0 3 chr13 458327 458637 -101414532 + AluY SINE Alu 1 309 -2 24 77 0 0 chr13 458664 458716 -101414453 + AT_rich Low_complexity Low_complexity 1 52 0 4059 190 33 21 chr13 458771 460340 -101412829 - L1MB1 LINE L1 -45 6123 4545 312 27 0 0 chr13 460963 461000 -101412169 + (CA)n Simple_repeat Simple_repeat 2 38 0 33 43 0 0 chr13 463199 463246 -101409923 + AT_rich Low_complexity Low_complexity 1 47 0 1471 201 14 10 chr13 463888 464181 -101408988 + AluJb SINE Alu 3 296 -16 496 182 0 0 chr13 464540 464612 -101408557 - MER58A DNA MER1_type -1 223 152 496 250 0 9 chr13 464612 464728 -101408441 - MER58A DNA MER1_type 0 115 1 367 333 57 13 chr13 464865 465024 -101408145 + L2 LINE L2 2819 2984 -329 2648 174 99 36 chr13 465258 465923 -101407246 - MER39 LTR ERV1 0 707 1 262 209 22 143 chr13 466736 466827 -101406342 - MER77 LTR ERV1 -515 90 11 225 152 22 0 chr13 466837 466883 -101406286 + HAL1 LINE L1 2327 2373 -134 27 49 0 0 chr13 467893 467934 -101405235 + AT_rich Low_complexity Low_complexity 1 41 0 2332 68 0 40 chr13 469210 469532 -101403637 - AluY SINE Alu -2 309 1 751 213 38 47 chr13 469581 469816 -101403353 + pTR5 LTR ERV1 743 975 -1463 3408 94 78 166 chr13 470030 470784 -101402385 + LTR12 LTR ERV1 1 688 0 225 0 0 0 chr13 471792 471817 -101401352 + (TAGA)n Simple_repeat Simple_repeat 4 28 0 2564 183 55 6 chr13 471977 472469 -101400700 - MLT2B1 LTR ERVL -4 516 1 22 35 0 0 chr13 473085 473114 -101400055 + AT_rich Low_complexity Low_complexity 1 29 0 2353 64 3 14 chr13 473277 473573 -101399596 + AluY SINE Alu 1 293 -18 1155 283 89 15 chr13 473659 474062 -101399107 + LTR16A LTR ERVL 17 449 -1 263 297 22 72 chr13 474062 474200 -101398969 + MER94 DNA DNA 4 134 0 357 319 48 24 chr13 474222 474388 -101398781 + MIR SINE MIR 63 232 -30 * 364 274 61 17 chr13 474384 474513 -101398656 - MIR SINE MIR -63 145 37 650 302 32 29 chr13 474621 474899 -101398270 - MLT1K LTR MaLR -10 578 300 829 319 88 0 chr13 474994 475314 -101397855 + L2 LINE L2 1321 1668 -1646 231 255 89 76 chr13 476077 476234 -101396935 - MIR SINE MIR -44 218 60 335 320 138 57 chr13 476308 476786 -101396383 + MLT1F LTR MaLR 18 534 -8 256 331 24 24 chr13 476918 477042 -101396127 + MIR SINE MIR 29 152 -110 21 89 0 0 chr13 477099 477155 -101396014 + AT_rich Low_complexity Low_complexity 1 56 0 303 319 34 8 chr13 477239 477358 -101395811 - L2 LINE L2 0 3313 3192 4496 256 68 41 chr13 478397 481211 -101391958 + L1M4 LINE L1 2 2991 -3653 593 219 103 0 chr13 481266 481421 -101391748 + L1M4 LINE L1 4026 4196 -2448 6378 226 19 8 chr13 481436 482862 -101390307 + L1PA16 LINE L1 5 1257 -5592 301 170 0 0 chr13 482857 482904 -101390265 - L1PA15-16 LINE L1 -5691 1158 1112 * 2562 100 5 24 chr13 482915 483286 -101389883 - THE1B LTR MaLR 0 364 1 9766 118 17 29 chr13 483286 484752 -101388417 - THE1B-int LTR MaLR 0 1580 133 5091 188 15 20 chr13 484746 486320 -101386849 + L1PA16 LINE L1 5302 6864 -5 * 689 233 28 40 chr13 486325 486578 -101386591 + L1M4 LINE L1 4204 4453 -2191 2535 188 13 15 chr13 486597 487284 -101385885 + L1M4 LINE L1 5592 6277 -405 4842 95 28 0 chr13 487664 487885 -101385284 + L1PA13 LINE L1 5414 5627 -536 2581 107 0 27 chr13 487885 488259 -101384910 - THE1B LTR MaLR 0 364 1 4842 95 28 0 chr13 488259 488760 -101384409 + L1PA13 LINE L1 5627 6156 -7 201 147 0 0 chr13 489037 489071 -101384098 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 178 68 27 chr13 491286 491359 -101381810 - L1ME4a LINE L1 -78 6043 5968 1993 201 8 2 chr13 491365 491763 -101381406 - L1PA16 LINE L1 -3 6163 5764 1103 243 73 64 chr13 492171 492619 -101380550 + MLT1C LTR MaLR 3 462 -5 189 0 0 0 chr13 492650 492671 -101380498 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 2136 67 0 39 chr13 493258 493543 -101379626 + AluY SINE Alu 38 311 0 201 176 0 0 chr13 493601 493635 -101379534 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 304 270 40 43 chr13 495041 495246 -101377923 - MIR SINE MIR 0 262 8 196 313 15 30 chr13 495457 495524 -101377645 - MIR SINE MIR -15 247 182 2449 69 0 10 chr13 495805 496108 -101377061 - AluY SINE Alu -11 300 1 318 303 113 21 chr13 496531 496769 -101376400 - MIR SINE MIR 0 262 3 243 0 0 0 chr13 497786 497813 -101375356 + (A)n Simple_repeat Simple_repeat 1 27 0 1117 72 0 0 chr13 498946 499085 -101374084 + AluY SINE Alu 156 294 -17 306 338 29 43 chr13 499877 500016 -101373153 - MER5A DNA MER1_type -1 188 52 1850 138 32 11 chr13 500120 500403 -101372766 + AluSg SINE Alu 1 289 -21 1985 140 64 3 chr13 500637 500980 -101372189 - THE1B LTR MaLR 0 364 1 1369 209 21 78 chr13 501114 501501 -101371668 + MLT1A1 LTR MaLR 1 365 0 250 315 28 42 chr13 503239 503382 -101369787 + HAL1b LINE L1 245 385 -963 1032 306 70 30 chr13 503499 504396 -101368773 + L1MEc LINE L1 150 1245 -4868 488 229 118 79 chr13 504417 504722 -101368447 + L1MEc LINE L1 1440 1756 -4640 3433 29 0 17 chr13 504727 505147 -101368022 - L1PA4 LINE L1 -3 6152 5740 237 54 27 0 chr13 505147 505184 -101367985 + L1P LINE L1 4890 4927 -1219 2321 114 0 0 chr13 505228 505535 -101367634 + AluSg SINE Alu 1 307 -3 4963 170 8 22 chr13 505715 506891 -101366278 - L1PA16 LINE L1 -1 6165 5007 813 271 65 23 chr13 506939 507016 -101366153 + L1MEc LINE L1 1974 2046 -4169 3285 243 41 30 chr13 507016 507147 -101366022 - Tigger6a DNA MER2_type -514 1083 955 1731 192 3 7 chr13 507147 507454 -101365715 + AluJb SINE Alu 1 306 -6 3285 243 41 30 chr13 507454 508392 -101364777 - Tigger6a DNA MER2_type -642 955 2 813 271 65 23 chr13 508392 509070 -101364099 + L1MEc LINE L1 2046 2732 -3483 1749 242 37 69 chr13 510206 510800 -101362369 - MER77 LTR ERV1 -6 599 25 472 213 22 0 chr13 510810 510946 -101362223 + CT-rich Low_complexity Low_complexity 2 140 0 1303 235 47 72 chr13 511041 511312 -101361857 + MLT1D LTR MaLR 5 258 -247 2150 102 7 7 chr13 511312 511605 -101361564 + AluSc SINE Alu 1 293 -16 1303 235 47 72 chr13 511605 511847 -101361322 + MLT1D LTR MaLR 258 505 0 1600 209 0 10 chr13 512834 513136 -101360033 + AluJo SINE Alu 11 309 -3 1499 214 51 2 chr13 514311 514704 -101358465 + MER54A LTR ERVL 1 412 -489 2072 118 74 15 chr13 514713 515051 -101358118 + THE1B LTR MaLR 7 364 0 1236 253 46 10 chr13 515089 515504 -101357665 + MER54A LTR ERVL 472 901 0 189 0 0 0 chr13 516220 516241 -101356928 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 22 35 0 0 chr13 516308 516337 -101356832 + AT_rich Low_complexity Low_complexity 1 29 0 9971 31 1 0 chr13 516337 518304 -101354865 - L1PA2 LINE L1 0 6155 4190 13436 40 1 0 chr13 518304 520048 -101353121 + L1PA2 LINE L1 2440 4185 -1961 26 0 0 0 chr13 520136 520162 -101353007 + AT_rich Low_complexity Low_complexity 1 26 0 317 263 26 20 chr13 520277 520429 -101352740 + (TA)n Simple_repeat Simple_repeat 1 153 0 31 58 0 0 chr13 520586 520638 -101352531 + AT_rich Low_complexity Low_complexity 1 52 0 2212 187 91 11 chr13 521204 521754 -101351415 + LTR49 LTR ERV1 1 594 -1 1775 163 58 21 chr13 521938 522367 -101350802 + LTR56 LTR ERV1 1 445 0 461 246 144 5 chr13 522507 522694 -101350475 - MER20 DNA MER1_type -3 216 4 25 51 0 0 chr13 523180 523219 -101349950 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr13 523246 523281 -101349888 + AT_rich Low_complexity Low_complexity 1 35 0 1391 181 87 56 chr13 523674 523705 -101349464 + LTR49 LTR ERV1 1 30 -565 2017 122 7 4 chr13 523705 523984 -101349185 - AluSq SINE Alu -20 293 14 1391 181 87 56 chr13 523984 524366 -101348803 + LTR49 LTR ERV1 30 427 -168 232 164 14 14 chr13 524400 524473 -101348696 + (TA)n Simple_repeat Simple_repeat 2 74 0 765 150 23 0 chr13 525738 525871 -101347298 + MSTB1 LTR MaLR 1 136 -296 731 320 64 63 chr13 525952 526832 -101346337 - L1MEc LINE L1 -4983 1222 351 361 233 39 23 chr13 526957 527086 -101346083 - L1MEc LINE L1 -6211 185 55 24 0 0 0 chr13 527340 527364 -101345805 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr13 527480 527501 -101345668 + AT_rich Low_complexity Low_complexity 1 21 0 252 300 70 19 chr13 527650 527860 -101345309 - L1MCa LINE L1 -4641 2080 1657 328 272 108 52 chr13 527908 528121 -101345048 - L1MCa LINE L1 -4802 1738 1514 198 0 0 0 chr13 528204 528226 -101344943 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 40398 56 3 2 chr13 528226 534356 -101338813 - L1PA4 LINE L1 -13 6142 9 695 126 7 0 chr13 534379 543990 -101329179 - CER Satellite Satellite 0 9671 1 1215 49 0 19 chr13 543995 544157 -101329012 + L1PA4 LINE L1 5996 6154 -1 22 0 0 0 chr13 544157 544179 -101328990 + AT_rich Low_complexity Low_complexity 1 22 0 2153 124 3 10 chr13 544517 544824 -101328345 + AluSp SINE Alu 1 305 -8 2051 119 10 0 chr13 544861 545156 -101328013 - AluSx SINE Alu -14 298 1 1370 180 26 16 chr13 546062 546490 -101326679 + MER67C LTR ERV1 218 709 -1 2219 174 16 5 chr13 546980 547412 -101325757 + LTR56 LTR ERV1 9 445 0 1996 127 3 3 chr13 549136 549419 -101323750 + AluSp SINE Alu 1 283 -30 252 216 18 108 chr13 549503 549614 -101323555 + MIR SINE MIR 153 253 -9 235 331 162 7 chr13 549831 549979 -101323190 + MER5A DNA MER1_type 19 189 0 2247 98 0 29 chr13 550833 551148 -101322021 + AluSx SINE Alu 1 306 -6 429 216 92 60 chr13 551480 551698 -101321471 - L1MC4 LINE L1 -537 7505 7281 357 342 161 0 chr13 551844 552005 -101321164 + MER5A DNA MER1_type 2 188 -1 203 413 0 0 chr13 553251 553326 -101319843 + L2 LINE L2 2742 2816 -498 22 35 0 0 chr13 553779 553808 -101319361 + AT_rich Low_complexity Low_complexity 1 29 0 3851 232 51 17 chr13 553883 556001 -101317168 - L1MA9 LINE L1 -25 6175 3981 451 288 31 18 chr13 556006 556169 -101317000 - L1MA9 LINE L1 -5090 865 701 481 353 20 5 chr13 556300 556501 -101316668 - L1MA9 LINE L1 -5404 551 348 1868 103 4 8 chr13 556510 556772 -101316397 - AluSq SINE Alu -52 261 1 1681 202 51 33 chr13 556990 557045 -101316124 - L1MB2 LINE L1 -18 7572 7519 1226 243 7 10 chr13 557045 557333 -101315836 + AluJo SINE Alu 2 288 -24 1681 202 51 33 chr13 557333 557748 -101315421 - L1MB2 LINE L1 -71 7519 7092 204 125 62 0 chr13 557748 557796 -101315373 + (TA)n Simple_repeat Simple_repeat 1 51 0 324 124 66 0 chr13 557813 557950 -101315219 + (TA)n Simple_repeat Simple_repeat 2 147 0 33 25 0 0 chr13 558091 558131 -101315038 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 558177 558199 -101314970 + AT_rich Low_complexity Low_complexity 1 22 0 1280 276 86 20 chr13 558218 559053 -101314116 - L1MB2 LINE L1 -607 6983 6095 784 285 40 53 chr13 559183 559334 -101313835 - L1MB2 LINE L1 -3262 4303 4151 1327 206 33 11 chr13 559334 559610 -101313559 - AluJb SINE Alu -30 282 1 784 285 40 53 chr13 559610 559740 -101313429 - L1MB2 LINE L1 -3414 4151 4021 1931 218 36 2 chr13 559740 560152 -101313017 + MSTB LTR MaLR 1 426 0 784 285 40 53 chr13 560152 560525 -101312644 - L1MB2 LINE L1 -3544 4021 3657 478 185 0 0 chr13 560525 560606 -101312563 - AluJ/FLAM SINE Alu -228 84 4 509 271 66 35 chr13 560690 561056 -101312113 - L1MB2 LINE L1 -3922 3645 3269 1983 125 0 4 chr13 561066 561382 -101311787 - AluSg1 SINE Alu 0 317 3 511 259 0 9 chr13 561640 561756 -101311413 - FLAM_C SINE Alu -28 115 1 270 254 9 45 chr13 561757 561867 -101311302 - L1MB2 LINE L1 -4573 2992 2887 369 264 26 109 chr13 561907 562076 -101311093 - L1MB2 LINE L1 -5031 2536 2382 2231 78 0 3 chr13 562076 562403 -101310766 - AluY SINE Alu 0 326 1 369 264 26 109 chr13 562403 562425 -101310744 - L1MB2 LINE L1 -5185 2382 2360 1111 267 54 43 chr13 562816 563112 -101310057 - L1MB2 LINE L1 -27 6380 6089 1835 143 17 10 chr13 563112 563405 -101309764 - AluSp SINE Alu -18 295 1 1111 267 54 43 chr13 563405 563549 -101309620 - L1MB2 LINE L1 -318 6089 5932 2131 108 0 7 chr13 563549 563845 -101309324 + AluY SINE Alu 1 294 -17 1111 267 54 43 chr13 563845 563868 -101309301 - L1MB2 LINE L1 -475 5932 5911 737 264 52 18 chr13 563871 564200 -101308969 - L1MB2 LINE L1 -1296 5086 4747 586 287 106 70 chr13 564203 564493 -101308676 - L1MB2 LINE L1 -3245 3137 2859 1788 146 33 0 chr13 564493 564767 -101308402 - AluSx SINE Alu -18 294 12 586 287 106 70 chr13 564767 564792 -101308377 - L1MB2 LINE L1 -3523 2859 2836 2126 112 10 0 chr13 564792 565097 -101308072 - AluY SINE Alu -3 308 1 586 287 106 70 chr13 565097 566535 -101306634 - L1MB2 LINE L1 -3546 2836 1314 1251 232 21 7 chr13 566535 566819 -101306350 - AluJb SINE Alu -24 288 1 586 287 106 70 chr13 566819 566847 -101306322 - L1MB2 LINE L1 -5068 1314 1288 357 313 143 24 chr13 566849 567185 -101305984 - L1MB2 LINE L1 -4862 1451 1076 849 162 37 11 chr13 571666 571857 -101301312 - L1MA3 LINE L1 0 6305 6110 1928 156 0 7 chr13 572491 572798 -101300371 - AluSg SINE Alu -1 309 5 2054 136 0 0 chr13 573491 573778 -101299391 + AluSc SINE Alu 7 293 -16 565 213 173 4 chr13 574521 574746 -101298423 - L1MA8 LINE L1 -4 6287 6025 4118 230 80 30 chr13 574757 576499 -101296670 - L1MA8 LINE L1 -359 5941 4081 2085 116 3 0 chr13 576499 576793 -101296376 + AluY SINE Alu 1 295 -16 4118 230 80 30 chr13 576793 576988 -101296181 - L1MA8 LINE L1 -2219 4081 3897 5229 273 48 16 chr13 576999 578454 -101294715 + L1 LINE L1 3310 4842 -1304 198 0 0 0 chr13 578454 578476 -101294693 + (CA)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr13 578476 578932 -101294237 + L1 LINE L1 4842 5282 -864 3650 203 39 17 chr13 578935 579753 -101293416 + L1PA16 LINE L1 5317 6152 -14 1026 152 162 0 chr13 579962 580160 -101293009 - MER30 DNA MER1_type 0 230 1 24 67 0 0 chr13 580789 580834 -101292335 + AT_rich Low_complexity Low_complexity 1 45 0 1200 126 6 0 chr13 581154 581328 -101291841 - AluSx SINE Alu -137 175 1 2337 82 0 3 chr13 582651 582957 -101290212 + AluY SINE Alu 1 305 -6 21 36 0 0 chr13 583161 583189 -101289980 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr13 583329 583350 -101289819 + AT_rich Low_complexity Low_complexity 1 21 0 3522 30 0 5 chr13 583465 583894 -101289275 - L1P LINE L1 -942 5204 4778 2806 21 0 0 chr13 583894 584221 -101288948 + L1PA2 LINE L1 5829 6155 0 2000 138 0 0 chr13 584565 584856 -101288313 - AluSq SINE Alu -22 291 1 21 71 0 0 chr13 584958 585000 -101288169 + AT_rich Low_complexity Low_complexity 1 42 0 7741 98 4 1 chr13 585055 586123 -101287046 + MER11C LTR ERVK 1 1071 0 1948 136 3 10 chr13 586687 586988 -101286181 - AluSq SINE Alu -14 299 1 310 173 0 0 chr13 587100 587152 -101286017 - MER51D LTR ERV1 -106 551 500 6522 156 18 7 chr13 588227 589371 -101283798 - THE1C-int LTR MaLR -158 1422 215 359 215 0 0 chr13 589371 589436 -101283733 - THE1C-int LTR MaLR -1515 65 1 1710 148 51 46 chr13 589436 589808 -101283361 - THE1C LTR MaLR 0 375 2 1984 104 32 26 chr13 590321 590630 -101282539 - AluY SINE Alu 0 311 1 12722 46 1 1 chr13 591420 593767 -101279402 - L1PA5 LINE L1 -9 6145 3797 1027 238 88 68 chr13 593942 594356 -101278813 - MLT1C LTR MaLR 0 467 42 1657 193 5 63 chr13 594356 594399 -101278770 + MLT1A1 LTR MaLR 5 49 -316 1996 110 35 21 chr13 594399 594689 -101278480 - AluSx SINE Alu -18 294 1 1657 193 5 63 chr13 594689 595028 -101278141 + MLT1A1 LTR MaLR 49 365 0 1027 238 88 68 chr13 595028 595066 -101278103 - MLT1C LTR MaLR -425 42 6 24 53 0 0 chr13 595341 595379 -101277790 + AT_rich Low_complexity Low_complexity 1 38 0 200 232 43 0 chr13 595421 595490 -101277679 + (TG)n Simple_repeat Simple_repeat 1 72 0 286 313 73 10 chr13 595559 595655 -101277514 - L2 LINE L2 -20 3252 3151 2129 106 0 0 chr13 595933 596247 -101276922 + L1PA7 LINE L1 5846 6159 0 23 33 0 0 chr13 596318 596348 -101276821 + AT_rich Low_complexity Low_complexity 1 30 0 882 316 63 29 chr13 597645 598135 -101275034 - LTR33 LTR ERVL -12 509 3 505 276 131 67 chr13 598571 598976 -101274193 - LTR33A LTR ERVL -92 431 1 242 281 152 30 chr13 599619 599783 -101273386 + MIR3 SINE MIR 16 199 -9 23 0 0 0 chr13 600228 600251 -101272918 + AT_rich Low_complexity Low_complexity 1 23 0 915 155 53 63 chr13 600764 600970 -101272199 - L1PA16 LINE L1 0 6166 5963 2184 125 0 0 chr13 601185 601480 -101271689 + AluSg SINE Alu 1 295 -15 207 0 0 0 chr13 602915 602938 -101270231 + (TCC)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr13 603059 603101 -101270068 + AT_rich Low_complexity Low_complexity 1 42 0 2089 289 57 43 chr13 603803 604509 -101268660 + L2 LINE L2 1710 2430 -884 519 276 74 0 chr13 604509 604672 -101268497 - MER96 DNA MER1_type 0 175 1 2089 289 57 43 chr13 604672 604775 -101268394 + L2 LINE L2 2430 2530 -784 1536 209 6 3 chr13 604941 605260 -101267909 - L1MC2 LINE L1 -1 6343 6024 233 337 45 11 chr13 605617 605706 -101267463 + L2 LINE L2 3125 3216 -56 269 26 26 0 chr13 608745 608783 -101264386 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 10798 43 5 38 chr13 608785 608871 -101264298 - SVA Other Other -3 1383 1 10798 45 5 40 chr13 608871 610264 -101262905 - SVA Other Other -42 1344 1 248 252 35 87 chr13 613721 613836 -101259333 - MIR SINE MIR -42 220 112 293 333 6 51 chr13 615820 615976 -101257193 + MIR3 SINE MIR 55 203 -5 506 103 0 13 chr13 616468 616546 -101256623 + MADE1 DNA Mariner 1 77 -3 648 258 6 0 chr13 616847 617006 -101256163 + MER5B DNA MER1_type 1 160 -18 665 219 55 7 chr13 617829 617975 -101255194 + L1MC4a LINE L1 6604 6756 -1052 444 296 29 6 chr13 618631 618803 -101254366 + L1MC4 LINE L1 7724 7899 -143 240 222 0 0 chr13 618880 618925 -101254244 + L1ME3A LINE L1 5625 5669 -501 381 249 52 55 chr13 619417 619706 -101253463 + L1ME3A LINE L1 5657 5990 -180 1590 199 0 7 chr13 620110 620392 -101252777 - AluJb SINE Alu -30 282 3 1336 243 0 24 chr13 620426 620722 -101252447 + AluJo SINE Alu 1 289 -23 2392 94 0 0 chr13 620916 621214 -101251955 + AluY SINE Alu 1 298 -13 265 183 195 12 chr13 622081 622163 -101251006 - MER5A DNA MER1_type -83 106 10 288 137 0 0 chr13 623427 623478 -101249691 + (CA)n Simple_repeat Simple_repeat 1 51 0 2228 98 0 7 chr13 623599 623895 -101249274 + AluSg1 SINE Alu 1 294 -15 486 343 94 4 chr13 626398 626524 -101246645 - MIR SINE MIR -8 254 141 7315 69 51 1 chr13 626524 627447 -101245722 - LTR5 LTR ERVK 0 969 1 486 343 94 4 chr13 627447 627553 -101245616 - MIR SINE MIR -121 141 1 571 257 14 0 chr13 627659 627807 -101245362 - MIR SINE MIR 0 262 113 1860 118 0 0 chr13 630594 630840 -101242329 + AluSq SINE Alu 1 246 -67 2168 122 3 3 chr13 631121 631424 -101241745 - AluSx SINE Alu -8 304 2 313 317 32 16 chr13 631507 631630 -101241539 - MIR SINE MIR -65 143 19 777 200 36 12 chr13 632565 632730 -101240439 + MER45A DNA AcHobo 10 178 0 338 341 28 23 chr13 632750 632926 -101240243 - MIR3 SINE MIR -16 192 16 266 330 71 9 chr13 634825 634937 -101238232 - L2 LINE L2 -3 3269 3151 2235 104 3 0 chr13 635798 636095 -101237074 - AluY SINE Alu -13 298 1 1791 151 7 7 chr13 636251 636536 -101236633 + AluSx SINE Alu 1 285 -27 228 111 0 0 chr13 636537 636573 -101236596 + (CA)n Simple_repeat Simple_repeat 2 37 0 729 162 5 136 chr13 636836 637027 -101236142 - FAM SINE Alu -9 40 1 288 96 96 0 chr13 637036 637088 -101236081 + Charlie7 DNA MER1_type 2556 2612 0 255 331 54 0 chr13 637244 637373 -101235796 + L1MC/D LINE L1 5497 5635 -486 1155 136 10 40 chr13 637373 637571 -101235598 - AluSg/x SINE Alu -12 297 106 188 67 33 0 chr13 637571 637601 -101235568 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 28 61 0 0 chr13 638524 638573 -101234596 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 644214 644235 -101228934 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 644272 644293 -101228876 + AT_rich Low_complexity Low_complexity 1 21 0 1670 191 3 13 chr13 644528 644832 -101228337 - AluSx SINE Alu -11 301 1 1921 126 25 0 chr13 646004 646309 -101226860 + AluSx SINE Alu 1 312 0 2726 268 65 25 chr13 646309 647637 -101225532 + L1M4 LINE L1 3130 4511 -1635 2093 286 71 50 chr13 647635 649079 -101224090 + L1 LINE L1 17 1429 -6136 * 1981 153 0 0 chr13 649079 649361 -101223808 + AluSx SINE Alu 1 282 -30 279 0 0 0 chr13 649364 649395 -101223774 + (CA)n Simple_repeat Simple_repeat 1 31 0 2093 286 71 50 chr13 649395 649619 -101223550 + L1 LINE L1 1430 2389 -5176 * 3383 183 19 84 chr13 649602 650260 -101222909 + L1 LINE L1 5405 5986 -1579 2269 114 0 0 chr13 650260 650568 -101222601 + AluSg SINE Alu 1 308 -2 3383 183 19 84 chr13 650568 650844 -101222325 + L1 LINE L1 5986 6278 -1287 207 0 0 0 chr13 650844 650867 -101222302 + (T)n Simple_repeat Simple_repeat 1 23 0 1325 209 11 28 chr13 651428 651715 -101221454 + AluJo SINE Alu 1 282 -30 23 78 0 0 chr13 653054 653105 -101220064 + AT_rich Low_complexity Low_complexity 1 51 0 37 39 0 0 chr13 653674 653725 -101219444 + AT_rich Low_complexity Low_complexity 1 51 0 2339 70 0 0 chr13 655417 655701 -101217468 - AluYa5 SINE Alu -9 302 19 1716 213 54 16 chr13 655701 656188 -101216981 + L1 LINE L1 6263 6767 -814 359 237 79 54 chr13 658274 658687 -101214482 + HSREP522 Satellite telomeric 1 423 -112 360 256 0 25 chr13 659885 660006 -101213163 + CT-rich Low_complexity Low_complexity 3 120 0 1515 177 22 4 chr13 661235 661506 -101211663 + LOR1-int LTR ERV1 2079 2354 -3592 888 157 38 22 chr13 661505 661690 -101211479 + LOR1-int LTR ERV1 1839 2026 -6094 * 1551 137 26 26 chr13 661690 661961 -101211208 - AluSx SINE Alu -36 276 6 3663 201 59 82 chr13 661977 663571 -101209598 - L1MEc LINE L1 -2865 4700 3142 261 0 0 0 chr13 663630 663659 -101209510 + (CA)n Simple_repeat Simple_repeat 2 30 0 212 337 0 23 chr13 663680 663766 -101209403 + L2 LINE L2 3188 3271 -1 6333 110 21 21 chr13 663854 664998 -101208171 - L1PA12 LINE L1 0 6168 5026 2924 194 7 4 chr13 664998 665560 -101207609 + L1PA12 LINE L1 4461 5024 -1122 426 273 35 41 chr13 665688 665860 -101207309 - L1MEc LINE L1 -6170 1576 1406 566 285 39 0 chr13 665904 666111 -101207058 + L1M4 LINE L1 2335 2549 -3597 * 2583 210 43 3 chr13 666107 666689 -101206480 + L1PB2 LINE L1 3795 4399 -1747 406 146 47 19 chr13 666689 666909 -101206260 + (TA)n Simple_repeat Simple_repeat 1 226 0 5662 169 27 15 chr13 666911 668303 -101204866 + L1PB2 LINE L1 4413 5832 -319 2051 159 0 0 chr13 668303 668611 -101204558 + AluSq SINE Alu 1 308 -5 5662 169 27 15 chr13 668611 668934 -101204235 + L1PB2 LINE L1 5832 6149 -2 385 299 80 25 chr13 668928 669252 -101203917 + L1M4 LINE L1 2538 2879 -3267 * 309 26 0 0 chr13 669297 669335 -101203834 + (TG)n Simple_repeat Simple_repeat 2 39 0 528 279 53 4 chr13 669404 669666 -101203503 - L1M4 LINE L1 -2982 3164 2890 398 208 75 0 chr13 669720 669840 -101203329 + L1MC4 LINE L1 7914 8042 0 361 316 105 55 chr13 669882 670310 -101202859 + L1M4 LINE L1 3812 4280 -1866 2143 127 0 0 chr13 670310 670610 -101202559 + AluSg1 SINE Alu 1 300 -9 361 316 105 55 chr13 670610 670779 -101202390 + L1M4 LINE L1 4280 4439 -1707 2016 133 7 3 chr13 670903 671205 -101201964 - AluSx SINE Alu -9 303 1 21 0 0 0 chr13 671376 671397 -101201772 + AT_rich Low_complexity Low_complexity 1 21 0 2327 81 7 0 chr13 671518 671815 -101201354 - AluY SINE Alu -12 299 1 21 0 0 0 chr13 672531 672552 -101200617 + AT_rich Low_complexity Low_complexity 1 21 0 4120 115 7 7 chr13 673688 674252 -101198917 - LTR6A LTR ERV1 0 564 1 617 239 222 0 chr13 674584 674764 -101198405 + MER58A DNA MER1_type 1 220 -4 30 0 0 0 chr13 676872 676902 -101196267 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr13 677527 677547 -101195622 + (CATA)n Simple_repeat Simple_repeat 2 21 0 23 54 0 0 chr13 678494 678531 -101194638 + AT_rich Low_complexity Low_complexity 1 37 0 620 363 28 15 chr13 678801 679126 -101194043 + LTR16A LTR ERVL 110 438 -12 2524 173 29 0 chr13 679743 680159 -101193010 + MSTA LTR MaLR 1 428 0 233 182 18 0 chr13 680350 680405 -101192764 + GA-rich Low_complexity Low_complexity 2 57 0 423 0 0 0 chr13 680564 680611 -101192558 + (TG)n Simple_repeat Simple_repeat 2 48 0 221 182 0 45 chr13 680668 680734 -101192435 + CT-rich Low_complexity Low_complexity 2 64 0 401 261 57 51 chr13 680807 680964 -101192205 - MLT1G1 LTR MaLR -8 587 430 2464 46 0 0 chr13 681095 681376 -101191793 + L1PA5 LINE L1 5874 6154 0 193 269 301 0 chr13 681612 681705 -101191464 + MIR SINE MIR 20 140 -122 1944 201 39 31 chr13 681711 682253 -101190916 - MLT2A2 LTR ERVL 0 554 1 214 216 134 62 chr13 682257 682354 -101190815 + MIR SINE MIR 144 247 -15 503 338 85 52 chr13 682798 683410 -101189759 - L2 LINE L2 -954 2360 1729 249 128 0 0 chr13 685258 685305 -101187864 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2203 110 7 7 chr13 686050 686358 -101186811 + MLT2A2 LTR ERVL 1 308 -145 2136 109 7 13 chr13 687180 687482 -101185687 - AluSx SINE Alu -12 300 1 860 241 0 0 chr13 688605 688771 -101184398 - MER2 DNA MER2_type -179 166 1 525 16 0 0 chr13 688788 688850 -101184319 + (CA)n Simple_repeat Simple_repeat 2 63 0 314 301 12 0 chr13 689064 689147 -101184022 + L2 LINE L2 3186 3269 -3 36 23 0 0 chr13 689148 689191 -101183978 + AT_rich Low_complexity Low_complexity 1 43 0 219 164 16 33 chr13 689301 689362 -101183807 + (TTAAA)n Simple_repeat Simple_repeat 4 63 0 348 322 127 39 chr13 689748 690080 -101183089 - L3 LINE CR1 -910 667 307 984 199 23 14 chr13 690160 690381 -101182788 - AluJo SINE Alu -7 305 83 26 50 0 0 chr13 690383 690423 -101182746 + AT_rich Low_complexity Low_complexity 1 40 0 209 287 10 59 chr13 690897 690998 -101182171 + L2 LINE L2 559 654 -2660 302 267 40 10 chr13 691439 691540 -101181629 - L2 LINE L2 -1 3312 3209 679 123 53 18 chr13 691767 691881 -101181288 + FLAM_C SINE Alu 17 134 -9 2268 116 3 0 chr13 691954 692255 -101180914 + AluSg SINE Alu 1 302 -8 188 311 33 16 chr13 692309 692370 -101180799 + L2 LINE L2 3142 3203 -69 189 74 0 0 chr13 694677 694704 -101178465 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 241 244 0 0 chr13 694705 694750 -101178419 - MIR SINE MIR -167 95 51 1283 136 25 13 chr13 695961 697895 -101175274 - GSATX Satellite centromeric -2 1956 1 757 169 0 0 chr13 697897 698015 -101175154 + AluJb SINE Alu 190 307 -5 272 345 42 42 chr13 698211 698379 -101174790 + MLT1K LTR MaLR 189 356 -232 262 114 0 0 chr13 698455 698490 -101174679 + U2 snRNA snRNA 1 35 -153 581 191 0 9 chr13 699381 699486 -101173683 - MLT1A2 LTR MaLR 0 374 271 222 276 0 88 chr13 700291 700483 -101172686 + C-rich Low_complexity Low_complexity 5 179 0 262 289 125 0 chr13 700976 701080 -101172089 - MER5B DNA MER1_type -8 170 54 432 246 26 9 chr13 703714 703828 -101169341 + MIR SINE MIR 32 147 -115 205 232 243 22 chr13 707027 707212 -101165957 + L2 LINE L2 3014 3239 -33 185 127 27 64 chr13 707470 707580 -101165589 + (TG)n Simple_repeat Simple_repeat 1 106 0 950 166 3 3 chr13 708512 708827 -101164342 + (TCCA)n Simple_repeat Simple_repeat 1 315 0 774 199 0 3 chr13 708845 709150 -101164019 + (TCCA)n Simple_repeat Simple_repeat 1 303 0 917 170 2 5 chr13 709191 709634 -101163535 + (TCCA)n Simple_repeat Simple_repeat 1 442 0 769 185 11 0 chr13 709662 709840 -101163329 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 603 229 0 0 chr13 709803 709973 -101163196 + (TTCA)n Simple_repeat Simple_repeat 4 173 0 * 273 111 111 63 chr13 714545 714608 -101158561 - MIR3 SINE MIR -53 155 90 222 309 41 10 chr13 715657 715754 -101157415 - MIR3 SINE MIR -43 165 66 357 241 85 68 chr13 715950 716244 -101156925 + L1MC5 LINE L1 7488 7786 -175 624 287 123 18 chr13 718773 719219 -101153950 - L1MC4a LINE L1 -1867 5941 5449 629 295 143 43 chr13 719284 719800 -101153369 - L1MC4a LINE L1 -992 5154 4587 1085 164 51 23 chr13 720395 720740 -101152429 - Tigger1 DNA MER2_type -8 2410 1 1270 156 6 147 chr13 721029 721375 -101151794 - AluSx SINE Alu -5 297 1 2318 141 86 5 chr13 722616 723012 -101150157 - MSTA LTR MaLR 0 428 1 1315 175 27 115 chr13 723912 724110 -101149059 - AluYb8 SINE Alu -6 312 155 2032 149 7 0 chr13 724110 724412 -101148757 - AluSx SINE Alu -8 304 1 1315 175 27 115 chr13 724412 724551 -101148618 - AluYb8 SINE Alu -163 155 5 4412 182 84 12 chr13 724920 726351 -101146818 + L1MA10 LINE L1 4783 6334 0 311 296 9 9 chr13 726823 726938 -101146231 - HAL1b LINE L1 -951 397 283 338 230 10 20 chr13 727006 727106 -101146063 - HAL1b LINE L1 -1166 182 84 418 323 37 6 chr13 727423 727587 -101145582 - L2 LINE L2 -1 3312 3144 339 274 21 0 chr13 727627 727722 -101145447 - MER58 DNA MER1_type -74 267 171 1160 179 0 72 chr13 728280 728503 -101144666 + AluJo SINE Alu 84 290 -22 412 288 28 34 chr13 728550 728727 -101144442 - L1ME4a LINE L1 -59 6062 5887 487 301 38 10 chr13 728795 729004 -101144165 - L1ME4a LINE L1 -226 5895 5681 1207 158 27 27 chr13 729035 729257 -101143912 - AluJo SINE Alu -5 307 86 3723 109 0 6 chr13 729836 730350 -101142819 + MER9 LTR ERVK 1 511 0 225 94 0 0 chr13 730427 730459 -101142710 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr13 730871 730892 -101142277 + (TC)n Simple_repeat Simple_repeat 2 22 0 288 0 0 0 chr13 730894 730926 -101142243 + (CA)n Simple_repeat Simple_repeat 1 32 0 276 265 0 0 chr13 731262 731364 -101141805 + (TG)n Simple_repeat Simple_repeat 1 102 0 228 235 0 0 chr13 731575 731643 -101141526 + (CA)n Simple_repeat Simple_repeat 2 69 0 344 265 26 30 chr13 731812 731944 -101141225 + MIR SINE MIR 47 176 -32 386 311 68 114 chr13 732119 732557 -101140612 + L2 LINE L2 2851 3268 -4 1075 246 79 16 chr13 732903 733208 -101139961 - MLT1J1 LTR MaLR -103 343 20 185 315 96 14 chr13 733341 733414 -101139755 + L2 LINE L2 3193 3271 -1 467 134 12 0 chr13 733416 733498 -101139671 + GA-rich Low_complexity Low_complexity 2 84 0 260 328 16 0 chr13 733514 733639 -101139530 + (TGGA)n Simple_repeat Simple_repeat 2 128 0 311 155 0 14 chr13 733646 733717 -101139452 + GA-rich Low_complexity Low_complexity 3 72 0 188 67 33 0 chr13 733733 733763 -101139406 + (TGGA)n Simple_repeat Simple_repeat 4 34 0 225 158 0 35 chr13 733789 733846 -101139323 - LTR66 LTR ERVL -152 458 404 270 0 0 0 chr13 733883 733913 -101139256 + (CA)n Simple_repeat Simple_repeat 2 31 0 359 286 71 48 chr13 735052 735220 -101137949 + MIR3 SINE MIR 20 191 -17 387 299 0 0 chr13 735276 735383 -101137786 + Charlie8 DNA MER1_type 158 264 -2153 392 255 85 9 chr13 736254 736360 -101136809 - L2 LINE L2 -23 3249 3136 913 134 0 0 chr13 736385 736512 -101136657 + AluSx SINE Alu 9 135 -177 37863 76 9 2 chr13 736513 742618 -101130551 + L1PA5 LINE L1 18 6169 0 796 191 0 0 chr13 742618 742744 -101130425 + AluSx SINE Alu 135 260 -50 216 0 0 0 chr13 742744 742768 -101130401 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 545 338 102 3 chr13 742787 743071 -101130098 - L2 LINE L2 -174 3139 2828 268 295 27 36 chr13 743158 743270 -101129899 + (CAGAGA)n Simple_repeat Simple_repeat 4 114 0 1679 191 23 22 chr13 743271 743645 -101129524 - MLT2C1 LTR ERVL -20 444 1 340 336 8 17 chr13 744528 744769 -101128400 + L1M4 LINE L1 5122 5360 -786 269 254 55 12 chr13 744837 745002 -101128167 + (CAGA)n Simple_repeat Simple_repeat 1 172 0 357 82 0 0 chr13 745871 745920 -101127249 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 202 263 34 17 chr13 749219 749337 -101123832 + (CAGA)n Simple_repeat Simple_repeat 1 120 0 1438 193 64 0 chr13 751394 751659 -101121510 + AluJo SINE Alu 1 282 -30 353 330 85 23 chr13 751880 752056 -101121113 - L2 LINE L2 -1 3312 3126 1421 193 76 6 chr13 752066 752382 -101120787 + MER44D DNA MER2_type 2 609 0 1702 171 0 18 chr13 752699 752980 -101120189 + AluJb SINE Alu 1 276 -36 255 301 7 7 chr13 752980 753073 -101120096 + GA-rich Low_complexity Low_complexity 1 93 0 221 213 107 40 chr13 753353 753428 -101119741 + MIR SINE MIR 64 143 -119 2293 105 21 43 chr13 753438 753574 -101119595 - THE1B LTR MaLR 0 364 227 2499 81 0 7 chr13 753574 753883 -101119286 - AluY SINE Alu -4 307 1 2293 105 21 43 chr13 753883 754118 -101119051 - THE1B LTR MaLR -137 227 1 5101 104 8 1 chr13 754118 754849 -101118320 - THE1B-int LTR MaLR 0 1580 845 275 146 0 0 chr13 754849 754897 -101118272 + Alu SINE Alu 248 295 -7 196 340 118 7 chr13 754900 755044 -101118125 - L2 LINE L2 -2356 958 799 22449 125 29 17 chr13 755171 759663 -101113506 - L1P3 LINE L1 -659 5810 1244 291 71 0 0 chr13 759663 759705 -101113464 + (TTG)n Simple_repeat Simple_repeat 1 42 0 22449 125 29 17 chr13 759705 760268 -101112901 - L1P3 LINE L1 -5225 1244 689 188 200 150 50 chr13 760478 760558 -101112611 + MIR SINE MIR 46 133 -75 1028 247 80 37 chr13 762585 763022 -101110147 + L1MB7 LINE L1 4578 5033 -1113 510 251 57 28 chr13 763062 763309 -101109860 + Charlie5 DNA MER1_type 2332 2585 -27 373 283 61 11 chr13 763312 763492 -101109677 + L1MB7 LINE L1 5039 5227 -919 965 190 124 13 chr13 763752 763978 -101109191 + L1MB2 LINE L1 5921 6171 0 7544 94 21 21 chr13 765772 766779 -101106390 + LTR13 LTR ERVK 1 1007 0 1090 195 191 24 chr13 767289 767535 -101105634 - AluJo SINE Alu -15 287 1 301 200 0 0 chr13 767535 767595 -101105574 + L1MC4 LINE L1 6642 6701 -1341 303 210 0 0 chr13 767642 767704 -101105465 - L1MC4 LINE L1 -1339 6703 6642 245 287 205 23 chr13 767745 767930 -101105239 + MIR SINE MIR 23 237 -25 399 170 2 17 chr13 768510 768599 -101104570 + L1MA6 LINE L1 6196 6283 -17 549 261 151 13 chr13 768600 768911 -101104258 + Charlie7 DNA MER1_type 1997 2350 -262 2223 135 21 52 chr13 769333 769914 -101103255 + MER4A LTR ERV1 34 664 0 4610 193 37 35 chr13 772344 774125 -101099044 + L1MB3 LINE L1 4398 6181 -2 1791 167 24 0 chr13 775211 775505 -101097664 + AluSg SINE Alu 1 301 -9 342 215 0 0 chr13 775505 775584 -101097585 + G-rich Low_complexity Low_complexity 3 81 0 1011 308 173 35 chr13 775803 776755 -101096414 - L2 LINE L2 -379 2935 1852 1719 214 79 46 chr13 776833 777016 -101096153 + L1MB7 LINE L1 5222 5397 -781 1682 167 3 17 chr13 777016 777304 -101095865 + AluJb SINE Alu 22 305 -7 1719 214 79 46 chr13 777304 777760 -101095409 + L1MB7 LINE L1 5397 5884 -294 452 201 27 121 chr13 777820 777969 -101095200 + L1MB7 LINE L1 6041 6175 -9 1527 193 24 20 chr13 779848 780143 -101093026 + AluJo SINE Alu 1 296 -16 927 239 127 14 chr13 780263 780547 -101092622 + MER33 DNA MER1_type 8 323 -1 435 223 54 9 chr13 781192 781304 -101091865 - Tigger1 DNA MER2_type 0 2418 2302 * 1779 157 23 0 chr13 781302 781601 -101091568 - Tigger1 DNA MER2_type -374 2044 1739 2067 120 3 0 chr13 781601 781884 -101091285 - AluSp SINE Alu -11 302 19 4371 114 16 41 chr13 781961 782230 -101090939 - Tigger1 DNA MER2_type -670 1748 1474 2308 98 0 3 chr13 782230 782526 -101090643 - AluY SINE Alu -16 295 1 4371 114 16 41 chr13 782526 782560 -101090609 - Tigger1 DNA MER2_type -944 1474 1441 1376 196 17 33 chr13 782560 782861 -101090308 + AluJo SINE Alu 1 296 -16 4371 114 16 41 chr13 782861 783259 -101089910 - Tigger1 DNA MER2_type -977 1441 1064 1535 174 3 49 chr13 883273 883577 -100989592 + AluJo SINE Alu 17 306 -6 452 330 48 35 chr13 884574 884804 -100988365 + L1MC4a LINE L1 5342 5574 -2234 284 236 24 79 chr13 884950 885077 -100988092 + L1MC4a LINE L1 5819 5938 -1870 1550 192 0 14 chr13 885293 885585 -100987584 + AluJo SINE Alu 6 293 -19 629 170 0 0 chr13 885671 885771 -100987398 - AluSp/q SINE Alu -19 294 195 240 237 173 58 chr13 885921 886060 -100987109 - MIR SINE MIR -58 204 50 233 286 0 0 chr13 886629 886678 -100986491 + (TG)n Simple_repeat Simple_repeat 1 49 0 3898 239 26 28 chr13 888687 889884 -100983285 - L1P LINE L1 -2604 3542 2348 1974 140 0 0 chr13 889886 890178 -100982991 + AluSg SINE Alu 1 292 -18 186 256 151 101 chr13 892729 892967 -100980202 + L2 LINE L2 2026 2275 -1039 2019 132 0 0 chr13 893517 893812 -100979357 - AluSx SINE Alu -17 295 1 1755 201 36 0 chr13 895250 895579 -100977590 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 896251 896272 -100976897 + AT_rich Low_complexity Low_complexity 1 21 0 3725 129 5 52 chr13 896300 896921 -100976248 - LTR14B LTR ERVK 0 608 17 440 297 121 18 chr13 897016 897181 -100975988 - MER5A DNA MER1_type 0 189 8 265 333 0 21 chr13 897216 897309 -100975860 - MER5A DNA MER1_type -31 158 68 2289 174 48 30 chr13 897441 897941 -100975228 - LTR22 LTR ERVK 0 509 1 1527 191 0 13 chr13 898074 898372 -100974797 + AluJo SINE Alu 1 294 -18 2003 140 0 3 chr13 898374 898688 -100974481 + AluSq SINE Alu 1 313 0 509 274 161 36 chr13 899864 900087 -100973082 + MIR SINE MIR 2 252 -10 845 161 112 0 chr13 900415 900558 -100972611 - AluSc SINE Alu -16 293 135 381 244 109 0 chr13 900625 900744 -100972425 - Charlie7 DNA MER1_type -266 2346 2215 1038 107 0 0 chr13 900901 901041 -100972128 + AluSx SINE Alu 61 200 -112 605 121 0 78 chr13 901084 901164 -100972005 + AluSx SINE Alu 203 273 -39 428 0 0 19 chr13 901164 901217 -100971952 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 605 121 0 78 chr13 901217 901252 -100971917 + AluSx SINE Alu 273 309 -3 1633 156 43 7 chr13 901343 901625 -100971544 - AluJo SINE Alu -19 293 2 580 163 7 118 chr13 901649 901784 -100971385 - AluJb SINE Alu -187 125 6 1489 85 5 5 chr13 901862 902062 -100971107 + AluY SINE Alu 95 294 -17 374 234 64 26 chr13 902066 902376 -100970793 - L1MC5 LINE L1 -302 7659 7304 1893 153 0 0 chr13 902577 902877 -100970292 + AluJb SINE Alu 1 300 -12 195 129 0 0 chr13 903069 903100 -100970069 + (TATG)n Simple_repeat Simple_repeat 4 34 0 311 268 98 0 chr13 903102 903184 -100969985 - L1MC4 LINE L1 -1339 6703 6614 * 360 272 0 22 chr13 903146 903238 -100969931 + L1MC4 LINE L1 6614 6703 -1339 257 231 0 22 chr13 903240 903331 -100969838 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 338 299 23 0 chr13 903331 903418 -100969751 + L1MC4 LINE L1 6615 6703 -1339 709 231 17 103 chr13 903428 903949 -100969220 + MER115 DNA AcHobo 71 4031 0 823 216 25 6 chr13 904956 905118 -100968051 - FRAM SINE Alu -14 162 1 21 0 0 0 chr13 905512 905533 -100967636 + AT_rich Low_complexity Low_complexity 1 21 0 597 279 62 12 chr13 905819 906059 -100967110 + L2 LINE L2 2033 2284 -1030 1608 143 34 4 chr13 906085 906350 -100966819 - AluJb SINE Alu -39 273 1 1137 273 45 32 chr13 906350 907059 -100966110 - L1ME LINE L1 -4823 1257 536 812 325 30 55 chr13 907203 907735 -100965434 - L1ME LINE L1 -5539 531 13 1817 166 0 3 chr13 907946 908230 -100964939 + AluJb SINE Alu 1 304 0 190 0 0 0 chr13 908230 908251 -100964918 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 429 219 57 19 chr13 908376 908481 -100964688 + MLT1J2 LTR MaLR 3 111 -339 443 274 74 57 chr13 908543 908718 -100964451 + MLT1J2 LTR MaLR 238 415 -31 638 211 102 0 chr13 909104 909251 -100963918 + L1PA16 LINE L1 5999 6160 -6 1202 162 18 0 chr13 909497 909719 -100963450 - L1MA4 LINE L1 0 6300 6075 1057 214 7 65 chr13 909790 910098 -100963071 - L1MA10 LINE L1 -13 6321 6032 406 255 0 0 chr13 910466 910560 -100962609 - MIR SINE MIR -110 152 59 488 239 92 0 chr13 910653 910783 -100962386 - MIR SINE MIR -65 197 56 2524 44 0 0 chr13 912229 912523 -100960646 + AluY SINE Alu 1 294 -17 1786 177 3 3 chr13 912947 913252 -100959917 + AluJb SINE Alu 2 306 -6 233 279 0 15 chr13 913262 913330 -100959839 - MIR3 SINE MIR -32 176 110 304 182 76 0 chr13 913396 913462 -100959707 - MIR SINE MIR -60 148 78 1761 174 0 17 chr13 913596 913889 -100959280 - AluJo SINE Alu -9 303 16 464 291 55 21 chr13 914444 914985 -100958184 + L1MC/D LINE L1 4928 5481 -750 849 163 27 0 chr13 915008 915155 -100958014 + FAM SINE Alu 1 42 -7 998 111 0 7 chr13 915203 915338 -100957831 - AluSq/x SINE Alu -178 134 1 1800 123 93 13 chr13 915449 915759 -100957410 - MER1B DNA MER1_type -2 335 1 1118 131 0 0 chr13 916508 916668 -100956501 + FRAM SINE Alu 2 161 -15 523 187 81 8 chr13 916868 916991 -100956178 - L1MB4 LINE L1 -1 6179 6048 2382 91 0 19 chr13 917258 917576 -100955593 + AluSx SINE Alu 1 312 0 310 279 158 6 chr13 917737 917895 -100955274 - MIR SINE MIR -79 183 2 248 200 36 91 chr13 917911 918021 -100955148 - L1MB4 LINE L1 -2330 5478 5375 1680 148 7 7 chr13 918044 918314 -100954855 - AluJb SINE Alu -40 272 3 770 171 0 8 chr13 918322 918445 -100954724 - FLAM_C SINE Alu -17 126 5 22 35 0 0 chr13 919491 919520 -100953649 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr13 919696 919741 -100953428 + AT_rich Low_complexity Low_complexity 1 45 0 261 241 93 28 chr13 920622 920730 -100952439 - L2 LINE L2 -1 3271 3157 893 224 91 5 chr13 920975 921185 -100951984 - L1ME1 LINE L1 -11 6155 5928 210 91 0 0 chr13 921515 921548 -100951621 + (TTTTA)n Simple_repeat Simple_repeat 4 36 0 842 144 16 171 chr13 921848 922153 -100951016 + LTR49 LTR ERV1 12 269 -326 398 188 25 19 chr13 922261 922377 -100950792 + LTR49 LTR ERV1 246 485 -254 352 203 174 80 chr13 922400 922538 -100950631 + LTR48 LTR ERV1 607 757 -30 2326 216 115 36 chr13 922615 923277 -100949892 + MER21B LTR ERV1 98 811 -52 26 82 0 0 chr13 924560 924621 -100948548 + GC_rich Low_complexity Low_complexity 1 61 0 1302 80 150 0 chr13 925031 925231 -100947938 + MER30 DNA MER1_type 1 230 0 2160 121 0 10 chr13 925981 926304 -100946865 - AluSx SINE Alu 0 320 1 860 159 7 0 chr13 926416 926554 -100946615 + L1M4 LINE L1 5342 5480 -698 1574 180 32 0 chr13 926563 926841 -100946328 + AluJb SINE Alu 1 287 -25 294 273 9 59 chr13 926895 927056 -100946113 + FRAM SINE Alu 8 135 -31 2364 108 0 0 chr13 928014 928319 -100944850 - AluSq SINE Alu -8 305 1 2355 109 0 0 chr13 929246 929549 -100943620 - AluSx SINE Alu -9 303 1 496 272 63 24 chr13 931788 931994 -100941175 - MIR SINE MIR -48 214 1 207 281 0 18 chr13 931988 932045 -100941124 + MIR SINE MIR 2 57 -205 * 195 252 118 39 chr13 932493 932620 -100940549 + L2 LINE L2 1429 1565 -1749 1643 125 27 116 chr13 932749 933084 -100940085 - AluJb SINE Alu -7 305 1 196 241 0 0 chr13 933175 933229 -100939940 + MIR SINE MIR 204 257 -5 732 261 336 8 chr13 933373 934158 -100939011 + L2 LINE L2 1587 2629 -685 764 258 104 13 chr13 934230 934548 -100938621 + LTR16A LTR ERVL 104 450 0 1116 280 54 19 chr13 934572 935186 -100937983 + L2 LINE L2 2668 3313 0 1753 180 0 10 chr13 935602 935896 -100937273 - AluJb SINE Alu -21 291 1 809 136 0 23 chr13 935932 936064 -100937105 - FLAM_A SINE Alu 0 142 14 1597 179 17 10 chr13 936969 937115 -100936054 + AluJo SINE Alu 1 144 -168 2438 74 0 3 chr13 937115 937414 -100935755 + AluY SINE Alu 1 298 -13 1597 179 17 10 chr13 937414 937558 -100935611 + AluJo SINE Alu 144 293 -19 216 0 0 0 chr13 937558 937582 -100935587 + (TA)n Simple_repeat Simple_repeat 2 25 0 2108 135 10 3 chr13 938537 938834 -100934335 - AluJo SINE Alu -13 299 1 565 15 0 0 chr13 939275 939343 -100933826 - L1PA6 LINE L1 -1 6153 6086 279 36 15 0 chr13 939343 939383 -100933786 + L1PA5 LINE L1 5929 5972 -182 2428 53 3 7 chr13 939401 939705 -100933464 - AluY SINE Alu -8 303 1 2460 77 0 0 chr13 939707 940018 -100933151 - AluY SINE Alu 0 311 1 189 0 0 0 chr13 940636 940657 -100932512 + (TG)n Simple_repeat Simple_repeat 2 22 0 1573 164 6 61 chr13 940657 940830 -100932339 - AluJo SINE Alu -26 286 133 2375 72 0 3 chr13 940830 941122 -100932047 + AluY SINE Alu 1 291 -20 1573 164 6 61 chr13 941122 941249 -100931920 - AluJo SINE Alu -179 133 1 10039 119 18 3 chr13 941335 942792 -100930377 + Tigger1 DNA MER2_type 1 1478 -940 2363 107 3 0 chr13 942793 943102 -100930067 + AluSq SINE Alu 1 310 -3 632 188 58 36 chr13 943120 943258 -100929911 + FRAM SINE Alu 20 160 -16 6096 125 21 2 chr13 943258 944188 -100928981 + Tigger1 DNA MER2_type 1471 2418 0 376 325 47 0 chr13 944208 944377 -100928792 - L1ME3A LINE L1 -288 5882 5706 1433 234 6 6 chr13 944393 944705 -100928464 - AluJo SINE Alu 0 312 1 1039 118 0 0 chr13 944705 944840 -100928329 - AluSq/x SINE Alu -177 135 1 339 249 0 4 chr13 944847 944952 -100928217 - L1ME3A LINE L1 -803 5361 5259 273 280 43 11 chr13 944965 945058 -100928111 + MIR SINE MIR 47 142 -120 1744 158 0 21 chr13 945107 945386 -100927783 - AluJo SINE Alu -39 273 1 2447 77 0 0 chr13 945828 946126 -100927043 - AluY SINE Alu -13 298 1 237 263 60 30 chr13 946254 946387 -100926782 - L1ME3A LINE L1 -1082 5064 4928 296 273 10 10 chr13 946562 946661 -100926508 - L1ME3A LINE L1 -1499 4647 4549 699 186 0 0 chr13 947078 947196 -100925973 - FLAM_C SINE Alu -15 118 1 389 281 29 41 chr13 947576 947818 -100925351 + L1ME4a LINE L1 5714 5952 -169 269 111 0 0 chr13 947827 947872 -100925297 + FLAM_A SINE Alu 89 133 0 1948 131 0 39 chr13 947887 948193 -100924976 + AluSx SINE Alu 1 294 -18 2422 72 0 0 chr13 948197 948490 -100924679 + AluY SINE Alu 2 294 -17 2419 77 3 0 chr13 948497 948796 -100924373 + AluSc SINE Alu 1 300 -9 233 163 0 0 chr13 948848 948891 -100924278 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 949201 949341 -100923828 - MER63 DNA MER1_type -276 786 5 435 155 70 120 chr13 949384 949526 -100923643 + L1ME4a LINE L1 5985 6119 -2 2118 132 0 0 chr13 949895 950182 -100922987 - AluSx SINE Alu -25 287 1 3151 165 79 27 chr13 950188 950844 -100922325 - L1MB5 LINE L1 0 6174 5485 2247 117 0 0 chr13 952138 952438 -100920731 + AluSg SINE Alu 1 300 -10 206 286 62 27 chr13 952719 952831 -100920338 + L2 LINE L2 3150 3265 -7 2007 162 24 26 chr13 953023 953406 -100919763 + MLT1B LTR MaLR 1 382 -8 23 0 0 0 chr13 953696 953719 -100919450 + AT_rich Low_complexity Low_complexity 1 23 0 310 193 59 82 chr13 953841 953976 -100919193 - L1ME4a LINE L1 -48 6073 5942 561 160 0 114 chr13 954108 954239 -100918930 - FLAM_A SINE Alu -13 120 5 24 53 0 0 chr13 954473 954511 -100918658 + AT_rich Low_complexity Low_complexity 1 38 0 868 128 45 0 chr13 954549 954682 -100918487 + FLAM_C SINE Alu 3 141 -2 181 300 29 29 chr13 955241 955311 -100917858 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr13 955567 955590 -100917579 + AT_rich Low_complexity Low_complexity 1 23 0 190 207 244 0 chr13 956761 956843 -100916326 - MIR SINE MIR -71 137 36 297 0 0 0 chr13 957778 957811 -100915358 + (TG)n Simple_repeat Simple_repeat 1 33 0 260 278 145 18 chr13 958436 958580 -100914589 + MIR SINE MIR 5 142 -66 3637 57 4 13 chr13 960988 961465 -100911704 - L1PA7 LINE L1 0 6154 5682 270 299 126 32 chr13 962186 962534 -100910635 + L1ME LINE L1 5504 5884 -237 592 203 27 20 chr13 963338 963486 -100909683 - L1PA16 LINE L1 0 6166 6018 3634 172 11 18 chr13 963717 964480 -100908689 - L1MA3 LINE L1 0 6305 5549 24 32 0 0 chr13 965357 965388 -100907781 + AT_rich Low_complexity Low_complexity 1 31 0 745 171 0 0 chr13 966188 966305 -100906864 + FLAM_A SINE Alu 1 117 -16 369 333 59 26 chr13 967874 968027 -100905142 - L2 LINE L2 -215 3098 2941 187 167 48 24 chr13 969812 969854 -100903315 + MER5A DNA MER1_type 43 85 -104 * 357 189 156 11 chr13 969838 969928 -100903241 - MER5A DNA MER1_type -77 112 10 327 25 0 0 chr13 972110 972150 -100901019 + (TG)n Simple_repeat Simple_repeat 1 40 0 437 188 21 0 chr13 972647 972743 -100900426 - Charlie1 DNA MER1_type -45 2716 2619 1121 206 5 0 chr13 974215 974424 -100898745 + AluJb SINE Alu 97 306 -6 2055 121 0 0 chr13 974763 975036 -100898133 + AluSx SINE Alu 1 273 -39 494 181 0 0 chr13 975038 975121 -100898048 + AluJb SINE Alu 206 288 -24 968 189 0 0 chr13 975174 975338 -100897831 + FRAM SINE Alu 8 171 -5 3437 162 32 0 chr13 975357 976018 -100897151 + L1MB3 LINE L1 5472 6153 -30 584 190 50 25 chr13 977465 977586 -100895583 - AluJb SINE Alu -15 297 174 1121 206 5 0 chr13 977762 977971 -100895198 + AluJb SINE Alu 97 306 -6 2271 124 0 0 chr13 978310 978617 -100894552 + AluSx SINE Alu 1 307 -5 24 32 0 0 chr13 979199 979230 -100893939 + AT_rich Low_complexity Low_complexity 1 31 0 1215 108 5 5 chr13 980017 980212 -100892957 - L1MA1 LINE L1 0 6302 6108 25 31 0 0 chr13 980406 980438 -100892731 + AT_rich Low_complexity Low_complexity 1 32 0 8879 219 30 20 chr13 980447 983155 -100890014 - L1 LINE L1 -1438 5410 2675 768 158 0 0 chr13 983193 983307 -100889862 - AluJo SINE Alu -21 291 178 1997 177 92 0 chr13 983307 983697 -100889472 + MSTB LTR MaLR 1 426 0 7875 194 18 11 chr13 983769 985383 -100887786 + MSTB-int LTR MaLR 27 1651 0 1940 202 52 2 chr13 985383 985784 -100887385 + MSTB LTR MaLR 1 421 -5 790 226 11 32 chr13 985784 985974 -100887195 - AluJo SINE Alu -126 186 1 1345 239 31 14 chr13 985975 986397 -100886772 - L1 LINE L1 -4180 2669 2241 282 73 0 0 chr13 986401 986442 -100886727 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 402 21 0 0 chr13 986441 986488 -100886681 + (TA)n Simple_repeat Simple_repeat 2 48 0 269 309 45 0 chr13 987404 987514 -100885655 + L1ME LINE L1 5474 5588 -533 2547 273 114 40 chr13 988045 989484 -100883685 + L2 LINE L2 1778 3313 0 7072 23 0 1 chr13 990671 991493 -100881676 + L1PA4 LINE L1 5332 6152 -3 337 279 279 27 chr13 991784 992078 -100881091 - L2 LINE L2 -1308 2006 1639 665 269 34 19 chr13 992873 993081 -100880088 + MIR SINE MIR 6 216 -46 2264 98 7 0 chr13 993424 993720 -100879449 + AluSg SINE Alu 1 298 -12 2917 248 26 9 chr13 994143 995312 -100877857 + L1PA16 LINE L1 1361 2574 -4223 7753 246 39 20 chr13 995317 997741 -100875428 + L1PA16 LINE L1 2787 5263 -1534 1842 162 17 3 chr13 997741 998037 -100875132 - AluJb SINE Alu -12 300 1 7753 246 39 20 chr13 998037 998164 -100875005 + L1PA16 LINE L1 5263 5386 -1411 2501 184 20 2 chr13 998164 998654 -100874515 + L1PA16 LINE L1 6313 6811 -6 281 360 64 41 chr13 999179 999351 -100873818 + L2 LINE L2 2564 2739 -575 561 250 0 0 chr13 999496 999640 -100873529 - L1MA10 LINE L1 -11 6323 6180 956 177 24 141 chr13 999658 999950 -100873219 - L1ME LINE L1 -571 5595 5367 1831 167 0 0 chr13 999950 1000256 -100872913 + L1PB1 LINE L1 5831 6136 -15 956 177 24 141 chr13 1000256 1000446 -100872723 - L1ME LINE L1 -799 5367 5156 7655 26 25 21 chr13 1000452 1001479 -100871690 - L1PA4 LINE L1 -8 6147 5120 684 249 61 6 chr13 1001574 1001755 -100871414 - MER58A DNA MER1_type -32 192 2 1456 228 69 24 chr13 1001780 1002231 -100870938 - L1ME LINE L1 -1947 4199 3729 3099 158 23 11 chr13 1002241 1002815 -100870354 - L1MC1 LINE L1 -19 6314 5734 1730 189 0 16 chr13 1004592 1004904 -100868265 - AluJo SINE Alu -5 307 1 359 292 112 11 chr13 1005633 1005910 -100867259 + L1M4 LINE L1 4017 4321 -1825 229 237 171 20 chr13 1005936 1006088 -100867081 + L1M4 LINE L1 4378 4552 -1594 2741 180 61 8 chr13 1006242 1007273 -100865896 - Tigger1 DNA MER2_type 0 2418 1301 289 304 80 22 chr13 1010818 1010956 -100862213 + MER5B DNA MER1_type 1 146 -32 280 293 57 0 chr13 1011535 1011692 -100861477 - L1ME LINE L1 -2402 3744 3579 414 296 76 35 chr13 1012142 1012456 -100860713 - L1ME4a LINE L1 -284 5837 5511 209 211 0 0 chr13 1014080 1014118 -100859051 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 459 292 51 17 chr13 1017278 1017456 -100855713 - L2 LINE L2 -410 2904 2721 2106 83 54 0 chr13 1018115 1018393 -100854776 + AluSp SINE Alu 3 295 -18 1236 185 12 62 chr13 1018766 1019090 -100854079 - L1MB8 LINE L1 0 6178 5871 3457 136 31 4 chr13 1019122 1019636 -100853533 + MER1A DNA MER1_type 2 529 0 1963 167 83 0 chr13 1019636 1020004 -100853165 - MSTB LTR MaLR -23 403 5 590 174 82 10 chr13 1020004 1020139 -100853030 - L1MB8 LINE L1 -308 5876 5743 7056 185 42 91 chr13 1020427 1022486 -100850683 - L1MB8 LINE L1 -756 5390 3433 544 183 26 2 chr13 1022960 1023075 -100850094 - L1MA9 LINE L1 -26 6277 6166 647 297 12 6 chr13 1024647 1024812 -100848357 + FAM SINE Alu 1 166 -9 1577 200 0 20 chr13 1024831 1025126 -100848043 - AluJo SINE Alu -23 289 1 9506 106 16 6 chr13 1025700 1027944 -100845225 - L1PA8 LINE L1 -5 6167 3905 10919 104 10 3 chr13 1028064 1029696 -100843473 - L1P3 LINE L1 -1676 4785 3142 42148 35 27 0 chr13 1030256 1036242 -100836927 - L1PA2 LINE L1 -4 6151 3 12704 129 6 44 chr13 1036242 1037226 -100835943 - L1P3 LINE L1 -3304 3157 2137 2327 40 0 27 chr13 1037226 1037522 -100835647 + L1PA6 LINE L1 5865 6152 -2 12704 129 6 44 chr13 1037522 1039437 -100833732 - L1P3 LINE L1 -4324 2137 299 212 286 71 71 chr13 1039876 1039960 -100833209 + L2 LINE L2 3174 3257 -15 347 320 40 20 chr13 1042036 1042186 -100830983 + MIR3 SINE MIR 8 160 -48 4712 78 17 95 chr13 1043852 1044683 -100828486 - MER4E LTR ERV1 0 766 1 181 323 144 72 chr13 1045556 1045986 -100827183 + L2 LINE L2 2812 3272 0 2208 105 20 0 chr13 1046540 1046844 -100826325 + AluSg SINE Alu 1 310 0 225 0 0 0 chr13 1047175 1047200 -100825969 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1936 242 73 4 chr13 1047268 1047951 -100825218 - L1MC4 LINE L1 -149 7893 7012 2792 206 34 75 chr13 1047980 1048852 -100824317 - L1MC4 LINE L1 -4 8038 7202 2196 79 3 26 chr13 1048898 1049201 -100823968 + AluSp SINE Alu 14 309 -4 697 145 0 0 chr13 1049201 1049318 -100823851 + L1MA3 LINE L1 6145 6261 -44 414 0 0 0 chr13 1049318 1049364 -100823805 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 0 0 0 chr13 1049370 1049395 -100823774 + AT_rich Low_complexity Low_complexity 1 25 0 1131 208 5 0 chr13 1049395 1049607 -100823562 - Tigger2 DNA MER2_type -2170 548 336 22 35 0 0 chr13 1052490 1052519 -100820650 + AT_rich Low_complexity Low_complexity 1 29 0 348 264 88 26 chr13 1052692 1052961 -100820208 - L1MC/D LINE L1 -751 5395 5195 13844 188 21 6 chr13 1053477 1055190 -100817979 - L1PB1 LINE L1 -5 6862 5176 387 0 0 0 chr13 1055190 1055233 -100817936 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 13844 188 21 6 chr13 1055233 1057553 -100815616 - L1PB1 LINE L1 -1691 5176 2778 2082 154 40 5 chr13 1057548 1057970 -100815199 - L1PB1 LINE L1 -4576 2287 1851 * 5906 160 24 5 chr13 1057978 1059823 -100813346 - L1PB1 LINE L1 0 6867 4994 350 198 0 0 chr13 1060594 1060675 -100812494 + L1 LINE L1 4213 4293 -1853 9418 196 6 5 chr13 1060677 1062956 -100810213 - L1PB1 LINE L1 -1820 5042 2704 1056 101 6 0 chr13 1063268 1063436 -100809733 - L1PB1 LINE L1 -4149 2714 2546 7224 185 59 6 chr13 1063536 1065787 -100807382 - L1PB1 LINE L1 -4333 2530 1 9991 148 49 3 chr13 1065799 1067584 -100805585 - L1PBa LINE L1 -4996 1867 1 300 333 101 13 chr13 1067844 1068003 -100805166 - L1M4 LINE L1 -2470 3676 3504 402 243 20 47 chr13 1069175 1069323 -100803846 + MLT1F LTR MaLR 14 157 -410 180 77 0 0 chr13 1069396 1069422 -100803747 + (TCC)n Simple_repeat Simple_repeat 2 27 0 677 220 155 22 chr13 1069428 1069651 -100803518 + MLT1F LTR MaLR 170 481 -112 263 286 0 33 chr13 1069677 1069768 -100803401 + L1M3c LINE L1 670 757 -5906 275 274 14 0 chr13 1070092 1070165 -100803004 + L1M3c LINE L1 1453 1526 -5127 1011 225 116 6 chr13 1070220 1070686 -100802483 - L1M4 LINE L1 -2831 3315 2799 4530 141 27 5 chr13 1071048 1071834 -100801335 - L1MA3 LINE L1 -2 6303 5501 361 307 123 43 chr13 1071834 1071997 -100801172 + L1M2 LINE L1 779 954 -5895 2231 119 0 3 chr13 1072379 1072682 -100800487 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr13 1073117 1073140 -100800029 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9352 208 32 7 chr13 1074101 1076517 -100796652 - L1PA15 LINE L1 -9 6156 3801 626 37 12 0 chr13 1076517 1076598 -100796571 + (TTTC)n Simple_repeat Simple_repeat 3 84 0 9352 208 32 7 chr13 1076598 1077170 -100795999 - L1PA15 LINE L1 -2364 3801 3075 2354 88 3 0 chr13 1077170 1077466 -100795703 - AluSp SINE Alu -1 312 16 9352 208 32 7 chr13 1077466 1077834 -100795335 - L1PA15 LINE L1 -3090 3075 2718 873 130 0 0 chr13 1077836 1077951 -100795218 - AluSq/x SINE Alu -196 117 3 472 274 43 37 chr13 1078104 1078268 -100794901 - L2 LINE L2 -1162 2152 1988 1863 109 76 0 chr13 1078304 1078579 -100794590 - AluSq SINE Alu -17 296 1 1680 160 34 10 chr13 1078623 1078916 -100794253 - AluJb SINE Alu -12 300 1 1896 126 41 0 chr13 1079127 1079398 -100793771 + AluSx SINE Alu 1 282 -30 2348 108 0 13 chr13 1079486 1079802 -100793367 + AluSq SINE Alu 1 312 -1 1444 168 34 48 chr13 1080365 1080586 -100792583 + AluJb SINE Alu 1 219 -93 2342 101 7 0 chr13 1080586 1080893 -100792276 - AluSq SINE Alu -4 309 1 1444 168 34 48 chr13 1080893 1080963 -100792206 + AluJb SINE Alu 219 288 -24 400 284 0 0 chr13 1081019 1081107 -100792062 + AluJ/FLAM SINE Alu 3 90 -222 296 265 114 38 chr13 1081222 1081354 -100791815 - L2 LINE L2 0 3313 3172 194 323 62 21 chr13 1081560 1081656 -100791513 + MIR SINE MIR 12 111 -151 2202 106 7 0 chr13 1082190 1082482 -100790687 + AluSp SINE Alu 2 295 -18 279 203 0 0 chr13 1082774 1082833 -100790336 + (TA)n Simple_repeat Simple_repeat 2 60 0 1173 137 0 12 chr13 1082833 1083001 -100790168 - AluSx SINE Alu -24 286 121 1195 122 0 0 chr13 1083471 1083643 -100789526 + AluSg/x SINE Alu 131 302 -7 2092 130 3 3 chr13 1083732 1084025 -100789144 - AluSx SINE Alu -19 293 1 963 143 0 0 chr13 1084029 1084162 -100789007 - AluSx SINE Alu -179 133 1 211 333 20 50 chr13 1084187 1084286 -100788883 - MER5A DNA MER1_type 0 189 94 519 161 43 0 chr13 1084854 1084947 -100788222 - AluSg/x SINE Alu -9 301 205 1887 178 0 3 chr13 1085084 1085377 -100787792 + AluJo SINE Alu 1 292 -20 326 272 95 44 chr13 1085426 1085584 -100787585 - L1MC/D LINE L1 -1973 5835 5670 2312 88 7 0 chr13 1085586 1085880 -100787289 - AluSx SINE Alu -16 296 1 1859 122 89 0 chr13 1085996 1086267 -100786902 - AluSx SINE Alu -17 295 1 1758 128 0 57 chr13 1086276 1086573 -100786596 - AluSg SINE Alu -6 304 25 850 142 0 0 chr13 1086600 1086741 -100786428 + AluSc SINE Alu 166 306 -3 1735 86 0 9 chr13 1086897 1087119 -100786050 + AluSc SINE Alu 73 292 -17 198 0 0 0 chr13 1087403 1087425 -100785744 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1809 113 12 4 chr13 1087425 1087682 -100785487 - AluSx SINE Alu -29 283 25 764 207 0 7 chr13 1088145 1088290 -100784879 + FRAM SINE Alu 20 163 -13 2303 106 0 0 chr13 1088306 1088608 -100784561 - AluSp SINE Alu -11 302 1 732 171 16 0 chr13 1088608 1088731 -100784438 - AluJb SINE Alu -175 137 13 26 0 0 0 chr13 1088759 1088785 -100784384 + AT_rich Low_complexity Low_complexity 1 26 0 349 140 0 0 chr13 1088867 1088924 -100784245 - AluS SINE Alu -244 57 1 2004 153 0 0 chr13 1088969 1089256 -100783913 - AluSx SINE Alu -25 287 1 21437 61 1 0 chr13 1089523 1092357 -100780812 + L1P LINE L1 1 2835 -3311 31693 41 2 2 chr13 1092364 1096413 -100776756 + L1P LINE L1 5 4052 -2094 678 149 0 18 chr13 1096516 1096630 -100776539 + FLAM_A SINE Alu 5 116 -17 2308 93 0 3 chr13 1096635 1096935 -100776234 - AluY SINE Alu -12 299 1 620 165 26 9 chr13 1097345 1097460 -100775709 + FLAM_A SINE Alu 1 117 -16 4464 179 37 5 chr13 1097529 1098403 -100774766 - L1MC1 LINE L1 -17 6316 5415 539 311 7 0 chr13 1098774 1098925 -100774244 - FRAM SINE Alu -24 152 1 306 0 0 0 chr13 1098927 1098961 -100774208 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1519 122 0 5 chr13 1098961 1099175 -100773994 - AluSg/x SINE Alu -29 281 69 1562 185 7 14 chr13 1099175 1099451 -100773718 + AluJo SINE Alu 17 290 -22 21 71 0 0 chr13 1100414 1100456 -100772713 + AT_rich Low_complexity Low_complexity 1 42 0 1703 168 18 3 chr13 1101117 1101403 -100771766 - AluJb SINE Alu -12 300 11 2341 72 0 7 chr13 1104125 1104429 -100768740 + AluY SINE Alu 1 302 -9 2203 117 0 0 chr13 1105052 1105361 -100767808 - AluSg SINE Alu -1 309 1 21 36 0 0 chr13 1105714 1105742 -100767427 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr13 1105820 1105850 -100767319 + AT_rich Low_complexity Low_complexity 1 30 0 245 271 37 19 chr13 1106056 1106163 -100767006 - MER104 DNA Tc2 -61 119 11 1396 51 0 29 chr13 1106874 1107049 -100766120 + AluY SINE Alu 124 293 -18 207 88 0 0 chr13 1108623 1108657 -100764512 + (T)n Simple_repeat Simple_repeat 1 34 0 875 153 26 37 chr13 1109960 1110149 -100763020 - MLT1B LTR MaLR -203 187 1 2299 117 0 0 chr13 1110430 1110737 -100762432 + AluSx SINE Alu 6 312 0 1461 75 0 0 chr13 1110847 1111021 -100762148 - AluSq SINE Alu -6 307 134 1937 110 0 53 chr13 1111026 1111368 -100761801 - AluSx SINE Alu 0 326 1 1956 236 75 10 chr13 1111417 1112119 -100761050 + L1ME LINE L1 3124 3871 -2275 1764 136 48 0 chr13 1112208 1112480 -100760689 - AluJb SINE Alu -27 285 1 2102 204 68 71 chr13 1112480 1112716 -100760453 + L1ME LINE L1 4571 4806 -1360 1934 133 9 59 chr13 1112716 1113040 -100760129 + AluJb SINE Alu 1 308 -4 2102 204 68 71 chr13 1113040 1113171 -100759998 + L1ME LINE L1 4806 4936 -1230 1780 155 20 30 chr13 1113171 1113475 -100759694 - AluSx SINE Alu -11 301 1 2102 204 68 71 chr13 1113475 1113487 -100759682 + L1ME LINE L1 4936 4947 -1219 2141 113 17 0 chr13 1113487 1113778 -100759391 - AluSx SINE Alu -16 296 1 2102 204 68 71 chr13 1113778 1113809 -100759360 + L1ME LINE L1 4947 4977 -1189 2295 87 0 14 chr13 1113809 1114123 -100759046 - AluSq SINE Alu 0 310 1 2102 204 68 71 chr13 1114123 1114640 -100758529 + L1ME LINE L1 4977 5490 -676 2205 106 0 34 chr13 1114640 1114773 -100758396 + AluSc SINE Alu 1 137 -172 1870 119 87 0 chr13 1114773 1115050 -100758119 + AluSg SINE Alu 1 301 -9 2205 106 0 34 chr13 1115050 1115236 -100757933 + AluSc SINE Alu 137 309 0 420 178 57 18 chr13 1115236 1115362 -100757807 + L1ME LINE L1 5678 5813 -371 * 534 241 37 25 chr13 1115360 1115410 -100757759 - L1M4 LINE L1 -2474 3672 3624 2156 126 24 0 chr13 1115410 1115704 -100757465 - AluSx SINE Alu -11 301 1 534 241 37 25 chr13 1115704 1115873 -100757296 - L1M4 LINE L1 -2522 3624 3455 272 263 149 18 chr13 1115963 1116077 -100757092 + MLT1K LTR MaLR 87 230 -358 1830 172 7 0 chr13 1116230 1116520 -100756649 - AluJb SINE Alu -20 292 1 2879 175 98 73 chr13 1116520 1116610 -100756559 - L1MDa LINE L1 -4577 1963 1877 2519 79 3 0 chr13 1116610 1116913 -100756256 - AluSg SINE Alu -6 304 1 2879 175 98 73 chr13 1116913 1117192 -100755977 - L1MDa LINE L1 -4663 1877 1606 432 0 0 0 chr13 1117192 1117240 -100755929 + (TA)n Simple_repeat Simple_repeat 2 49 0 2050 104 0 0 chr13 1117241 1117501 -100755668 - AluSg SINE Alu -16 294 35 2879 175 98 73 chr13 1117501 1117673 -100755496 - L1MDa LINE L1 -4934 1606 1440 2357 99 0 0 chr13 1117673 1117967 -100755202 - AluSc SINE Alu -15 294 1 2879 175 98 73 chr13 1117967 1117988 -100755181 - L1MDa LINE L1 -5100 1440 1421 2151 124 0 13 chr13 1117988 1118286 -100754883 - AluSx SINE Alu -18 294 1 2879 175 98 73 chr13 1118286 1118713 -100754456 - L1MDa LINE L1 -5119 1421 945 380 71 18 0 chr13 1119078 1119134 -100754035 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 200 328 0 0 chr13 1119134 1119195 -100753974 - L2 LINE L2 -9 3263 3203 266 186 29 0 chr13 1119359 1119429 -100753740 + GA-rich Low_complexity Low_complexity 3 74 0 1804 162 154 0 chr13 1120546 1120917 -100752252 - MSTA LTR MaLR 0 428 1 350 153 0 71 chr13 1120917 1121002 -100752167 - MSTA-int LTR MaLR 0 1580 1502 2319 88 0 10 chr13 1121002 1121309 -100751860 - AluY SINE Alu -7 304 1 2671 43 0 7 chr13 1121476 1121778 -100751391 - AluY SINE Alu -11 300 1 324 0 0 0 chr13 1122504 1122540 -100750629 + (CA)n Simple_repeat Simple_repeat 2 37 0 700 196 0 14 chr13 1122560 1122703 -100750466 + FLAM_C SINE Alu 3 143 0 334 302 100 4 chr13 1122710 1122904 -100750265 + HAL1 LINE L1 1105 3200 -1203 348 153 0 112 chr13 1124240 1124338 -100748831 + L1ME4a LINE L1 6035 6121 0 1313 176 179 3 chr13 1124344 1124640 -100748529 + MER7A DNA MER2_type 1 346 0 1136 191 120 32 chr13 1124717 1125058 -100748111 + MLT1A2 LTR MaLR 2 372 -2 536 197 0 16 chr13 1125474 1125601 -100747568 + FLAM_A SINE Alu 17 141 -1 1218 151 82 0 chr13 1125734 1125966 -100747203 + LTR23 LTR ERV1 2 252 -185 411 178 0 0 chr13 1125978 1126051 -100747118 + FLAM SINE Alu 46 118 -15 892 91 57 62 chr13 1126057 1126197 -100746972 + LTR23 LTR ERV1 245 385 -52 1962 132 0 55 chr13 1126197 1126523 -100746646 - AluSx SINE Alu -4 308 1 892 91 57 62 chr13 1126523 1126558 -100746611 + LTR23 LTR ERV1 385 419 -18 1879 82 71 0 chr13 1126559 1126841 -100746328 - AluSx SINE Alu 0 311 12 251 373 8 0 chr13 1127801 1127927 -100745242 - Charlie1 DNA MER1_type -2 2759 2633 1373 186 12 0 chr13 1127928 1128181 -100744988 + AluJo SINE Alu 41 296 -16 1540 156 62 28 chr13 1128259 1128443 -100744726 - AluJb SINE Alu -13 299 100 2217 98 21 0 chr13 1128443 1128729 -100744440 + AluY SINE Alu 1 292 -19 1540 156 62 28 chr13 1128729 1128833 -100744336 - AluJb SINE Alu -212 100 1 1034 276 60 10 chr13 1128836 1129234 -100743935 - LTR33 LTR ERVL -94 427 10 27 0 0 0 chr13 1129583 1129610 -100743559 + AT_rich Low_complexity Low_complexity 1 27 0 2158 136 3 0 chr13 1131092 1131394 -100741775 + AluSx SINE Alu 1 303 -9 1964 127 99 0 chr13 1132482 1132766 -100740403 - AluSx SINE Alu 0 312 1 1690 185 12 0 chr13 1132847 1133101 -100740068 - AluSx SINE Alu -55 257 1 396 171 14 0 chr13 1133104 1133174 -100739995 - AluJ/FRAM SINE Alu -5 297 227 2111 128 3 0 chr13 1133199 1133496 -100739673 + AluSx SINE Alu 5 302 -10 413 273 101 22 chr13 1133496 1133635 -100739534 - MER58A DNA MER1_type -33 191 42 2345 66 0 14 chr13 1133956 1134271 -100738898 - AluY SINE Alu 0 311 1 1554 176 54 7 chr13 1134271 1134550 -100738619 - AluJb SINE Alu -17 295 4 590 160 0 0 chr13 1134805 1134905 -100738264 + AluJ/FLAM SINE Alu 2 101 -211 21 0 0 0 chr13 1136173 1136194 -100736975 + AT_rich Low_complexity Low_complexity 1 21 0 488 234 64 28 chr13 1137455 1137596 -100735573 + LTR42 LTR ERVL 1 146 -349 495 152 0 0 chr13 1137596 1137675 -100735494 + AluJb SINE Alu 210 288 -24 244 131 82 0 chr13 1137686 1137747 -100735422 + T-rich Low_complexity Low_complexity 4 69 0 204 288 0 0 chr13 1139859 1139932 -100733237 + T-rich Low_complexity Low_complexity 1 73 0 205 111 74 0 chr13 1139938 1139992 -100733177 + (TA)n Simple_repeat Simple_repeat 1 58 0 2107 120 0 0 chr13 1139992 1140266 -100732903 - AluSx SINE Alu -26 286 13 1279 167 94 45 chr13 1140287 1140575 -100732594 - AluJo SINE Alu -10 302 1 2092 139 7 0 chr13 1140581 1140882 -100732287 - AluSx SINE Alu -9 303 1 799 199 165 79 chr13 1140892 1141158 -100732011 - AluJo SINE Alu -12 290 2 1248 296 60 46 chr13 1141162 1141232 -100731937 - L1MC4 LINE L1 0 8042 7974 1788 195 10 3 chr13 1141232 1141530 -100731639 + AluJo SINE Alu 7 306 -6 1248 296 60 46 chr13 1141530 1142176 -100730993 - L1MC4 LINE L1 -68 7974 7316 1705 186 28 3 chr13 1142199 1142490 -100730679 + AluSx SINE Alu 1 298 -14 1145 184 87 5 chr13 1142502 1142709 -100730460 + AluJo SINE Alu 88 311 -1 711 200 0 0 chr13 1142712 1142842 -100730327 - AluJo/FLAM SINE Alu -172 130 1 659 256 45 76 chr13 1142843 1143132 -100730037 - L1MC4 LINE L1 -823 7219 6940 2335 111 3 0 chr13 1143326 1143633 -100729536 + AluSx SINE Alu 5 312 0 1941 130 23 27 chr13 1144502 1144649 -100728520 - AluSx SINE Alu -12 300 154 5738 136 27 32 chr13 1144649 1145726 -100727443 + MER11C LTR ERVK 1 1071 0 1941 130 23 27 chr13 1145726 1145879 -100727290 - AluSx SINE Alu -158 154 1 760 118 30 7 chr13 1145902 1146037 -100727132 - L1MB2 LINE L1 -4 6167 6030 663 148 0 33 chr13 1146059 1146181 -100726988 + FLAM_C SINE Alu 16 133 -10 1152 193 23 42 chr13 1146199 1146464 -100726705 - L1MB2 LINE L1 -188 5995 5736 1624 197 38 0 chr13 1146464 1146754 -100726415 - AluJo SINE Alu -8 304 4 1098 256 37 8 chr13 1146758 1147109 -100726060 - L1MB2 LINE L1 -941 5205 4845 240 258 62 31 chr13 1148178 1148275 -100724894 + MER5A DNA MER1_type 8 107 -82 2157 141 0 0 chr13 1151732 1152030 -100721139 - AluSx SINE Alu -9 303 6 1862 167 0 13 chr13 1152101 1152401 -100720768 + AluJo SINE Alu 1 296 -16 1507 216 7 7 chr13 1152976 1153268 -100719901 - AluJo SINE Alu -18 294 3 268 308 10 0 chr13 1154285 1154389 -100718780 + MIR SINE MIR 61 165 -97 505 179 109 98 chr13 1159478 1159567 -100713602 - L1MB8 LINE L1 -37 6141 6054 1908 162 20 0 chr13 1159567 1159863 -100713306 - AluSx SINE Alu -8 304 3 505 179 109 98 chr13 1159863 1159957 -100713212 - L1MB8 LINE L1 -124 6054 5956 1673 233 55 37 chr13 1159957 1160446 -100712723 + MLT1D LTR MaLR 1 498 -7 2063 198 40 106 chr13 1160452 1161391 -100711778 + MLT1D-int LTR MaLR 2 875 -496 3216 168 58 37 chr13 1161568 1161608 -100711561 - L1MB8 LINE L1 -205 5973 5935 2051 134 3 0 chr13 1161608 1161906 -100711263 - AluSg SINE Alu -11 299 1 3216 168 58 37 chr13 1161906 1162313 -100710856 - L1MB8 LINE L1 -243 5935 5538 1537 166 68 7 chr13 1162313 1162591 -100710578 + AluSx SINE Alu 2 296 -16 3216 168 58 37 chr13 1162591 1163113 -100710056 - L1MB8 LINE L1 -640 5538 4981 2166 111 0 20 chr13 1163255 1163552 -100709617 + AluSg SINE Alu 5 295 -15 507 138 0 0 chr13 1163990 1164070 -100709099 + FLAM_C SINE Alu 64 143 0 1169 180 28 14 chr13 1164553 1164770 -100708399 - AluJo SINE Alu -11 301 82 2567 47 0 7 chr13 1165111 1165410 -100707759 - AluY SINE Alu -14 297 1 1726 156 10 34 chr13 1165475 1165770 -100707399 + AluJb SINE Alu 1 288 -24 1635 154 18 18 chr13 1165802 1166088 -100707081 + AluJo SINE Alu 14 299 -13 435 131 0 0 chr13 1166195 1166256 -100706913 - U6 snRNA snRNA -46 61 1 283 298 63 63 chr13 1166557 1166873 -100706296 + L2 LINE L2 1695 2010 -1304 892 249 139 79 chr13 1166997 1167059 -100706110 - L2 LINE L2 0 3313 3256 791 190 0 29 chr13 1167059 1167196 -100705973 + FLAM_C SINE Alu 1 133 0 892 249 139 79 chr13 1167196 1167395 -100705774 - L2 LINE L2 -57 3256 3070 1290 201 129 8 chr13 1167395 1167658 -100705511 - AluJo SINE Alu -7 295 1 1653 183 3 29 chr13 1167659 1167965 -100705204 - AluJo SINE Alu -14 298 1 892 249 139 79 chr13 1167965 1168181 -100704988 - L2 LINE L2 -242 3071 2804 697 291 25 42 chr13 1168666 1168951 -100704218 - L2 LINE L2 -757 2557 2278 513 154 0 0 chr13 1169118 1169196 -100703973 - MADE1 DNA Mariner 0 80 3 1743 174 14 0 chr13 1170135 1170428 -100702741 + AluJb SINE Alu 1 297 -15 2109 117 17 10 chr13 1170432 1170731 -100702438 + AluSq SINE Alu 1 301 -12 2235 116 0 16 chr13 1171897 1172208 -100700961 + AluSx SINE Alu 1 306 -6 327 179 43 0 chr13 1172208 1172348 -100700821 + (TA)n Simple_repeat Simple_repeat 1 146 0 2159 114 0 0 chr13 1172777 1173058 -100700111 - AluSx SINE Alu -15 297 17 1654 164 32 0 chr13 1173779 1174059 -100699110 + AluJo SINE Alu 1 289 -23 900 187 94 0 chr13 1174141 1174312 -100698857 - MER5A DNA MER1_type 0 189 3 309 225 162 42 chr13 1174558 1174608 -100698561 + L1MC5 LINE L1 7609 7652 -309 1806 155 7 0 chr13 1174608 1174879 -100698290 + AluSx SINE Alu 6 278 -34 309 225 162 42 chr13 1174879 1175019 -100698150 + L1MC5 LINE L1 7652 7822 -139 1101 147 17 6 chr13 1175020 1175197 -100697972 + AluSg/x SINE Alu 127 305 -7 1538 223 0 0 chr13 1175203 1175494 -100697675 + AluJb SINE Alu 3 293 -19 2116 116 10 3 chr13 1175548 1175840 -100697329 + AluSq SINE Alu 1 294 -19 1981 161 0 3 chr13 1175882 1176187 -100696982 - AluSx SINE Alu -8 304 1 315 336 212 12 chr13 1176239 1176498 -100696671 - L3 LINE CR1 -72 1505 1195 2009 156 0 0 chr13 1176952 1177247 -100695922 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr13 1178235 1178259 -100694910 + AT_rich Low_complexity Low_complexity 1 24 0 607 280 104 45 chr13 1178427 1178763 -100694406 + L2 LINE L2 2077 2432 -882 1630 135 21 77 chr13 1178863 1179190 -100693979 + AluJb SINE Alu 1 309 -3 273 356 48 34 chr13 1179232 1179440 -100693729 - L2 LINE L2 -76 3196 2986 1794 164 20 0 chr13 1179748 1180040 -100693129 - AluJo SINE Alu -14 298 1 21 0 0 0 chr13 1180914 1180935 -100692234 + AT_rich Low_complexity Low_complexity 1 21 0 657 151 0 0 chr13 1181507 1181600 -100691569 + AluJ/FLAM SINE Alu 2 94 -218 291 157 0 0 chr13 1181636 1181687 -100691482 + (CA)n Simple_repeat Simple_repeat 2 52 0 1881 164 0 3 chr13 1181695 1181987 -100691182 - AluSx SINE Alu -21 291 1 895 169 48 6 chr13 1182003 1182169 -100691000 + FRAM SINE Alu 1 165 -11 234 0 0 0 chr13 1232385 1232411 -100640758 + (CCA)n Simple_repeat Simple_repeat 1 26 0 830 139 16 0 chr13 1232467 1232596 -100640573 - AluJb SINE Alu -181 131 1 488 208 47 0 chr13 1232597 1232726 -100640443 + L1M4 LINE L1 4054 4188 -1958 1622 142 67 8 chr13 1232749 1233016 -100640153 + AluSq SINE Alu 3 285 -28 189 0 0 0 chr13 1233025 1233046 -100640123 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 999 168 12 6 chr13 1233046 1233213 -100639956 + FRAM SINE Alu 2 169 -7 23 33 0 0 chr13 1233351 1233381 -100639788 + AT_rich Low_complexity Low_complexity 1 30 0 2132 114 0 7 chr13 1233390 1233687 -100639482 + AluSx SINE Alu 1 295 -17 1996 82 0 0 chr13 1233921 1234165 -100639004 + AluSx SINE Alu 56 299 -13 2015 113 0 3 chr13 1234997 1235279 -100637890 + AluSx SINE Alu 1 281 -31 518 83 0 0 chr13 1235353 1235425 -100637744 - LTR5 LTR ERVK 0 969 898 1871 157 10 0 chr13 1236136 1236429 -100636740 - AluSx SINE Alu -16 296 1 189 0 0 0 chr13 1238007 1238028 -100635141 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 2301 93 0 0 chr13 1239454 1239744 -100633425 + AluSg SINE Alu 3 292 -18 901 157 6 35 chr13 1240161 1240333 -100632836 - AluJb SINE Alu 0 312 146 26 30 0 0 chr13 1240341 1240374 -100632795 + AT_rich Low_complexity Low_complexity 1 33 0 2287 307 42 22 chr13 1240530 1241827 -100631342 - L1M2c LINE L1 -5294 1495 752 1482 158 8 15 chr13 1241927 1242186 -100630983 + L1PA15 LINE L1 5905 6161 -4 394 244 0 76 chr13 1242585 1242716 -100630453 - MIR SINE MIR -55 207 87 654 223 25 69 chr13 1242787 1242989 -100630180 - AluSg/x SINE Alu 0 312 120 396 0 0 0 chr13 1243507 1243551 -100629618 + (TG)n Simple_repeat Simple_repeat 2 45 0 1342 191 8 23 chr13 1243607 1243869 -100629300 + AluJb SINE Alu 32 289 -23 7360 29 2 4 chr13 1244401 1245403 -100627766 + L1PA2 LINE L1 5111 6113 -42 188 111 28 0 chr13 1245664 1245700 -100627469 + (CATA)n Simple_repeat Simple_repeat 2 38 0 1540 212 0 3 chr13 1246617 1246923 -100626246 + AluSq SINE Alu 1 305 -8 11810 75 3 3 chr13 1247079 1248670 -100624499 + L1P LINE L1 3813 5403 -743 1836 110 92 4 chr13 1251160 1251433 -100621736 + AluSg SINE Alu 1 297 -13 10596 37 1 0 chr13 1251979 1253261 -100619908 + L1P LINE L1 2827 4109 -2037 2153 120 0 17 chr13 1253562 1253862 -100619307 - AluSx SINE Alu -17 295 1 1847 172 3 0 chr13 1254649 1254939 -100618230 + AluJo SINE Alu 1 291 -21 20152 159 104 39 chr13 1255374 1259763 -100613406 + L1P LINE L1 1 4673 -1473 1021 108 6 6 chr13 1261300 1261466 -100611703 + L1MA6 LINE L1 6129 6294 -6 1330 190 42 13 chr13 1261473 1261793 -100611376 + L1ME LINE L1 5269 5599 -567 1399 264 60 9 chr13 1261799 1262234 -100610935 + L1MCa LINE L1 22 478 -5948 319 192 20 50 chr13 1262251 1262350 -100610819 + L1MCa LINE L1 443 538 -5888 3772 118 5 0 chr13 1262588 1263180 -100609989 + Tigger1 DNA MER2_type 588 1182 -1236 5311 238 34 28 chr13 1263181 1264704 -100608465 + L1M2c LINE L1 14 1380 -5409 21815 48 45 3 chr13 1264804 1267756 -100605413 - L1P LINE L1 -3070 3076 1 2113 112 3 0 chr13 1268377 1268702 -100604467 + AluSg SINE Alu 1 326 0 203 185 0 19 chr13 1268865 1268919 -100604250 + (CATA)n Simple_repeat Simple_repeat 2 54 0 460 219 0 0 chr13 1269837 1269919 -100603250 + AluS SINE Alu 1 82 -230 1378 115 0 0 chr13 1270019 1270193 -100602976 + AluSp SINE Alu 105 278 -35 2063 191 23 25 chr13 1270217 1270421 -100602748 + L1M4 LINE L1 4650 4853 -1293 2255 129 0 0 chr13 1270421 1270724 -100602445 - AluSx SINE Alu -9 303 1 2063 191 23 25 chr13 1270724 1271036 -100602133 + L1M4 LINE L1 4853 5165 -981 865 169 0 0 chr13 1271054 1271184 -100601985 + AluJb SINE Alu 153 282 -30 23 0 0 53 chr13 1271190 1271205 -100601964 + AT_rich Low_complexity Low_complexity 1 15 -21 1778 117 98 0 chr13 1271205 1271469 -100601700 + AluSx SINE Alu 1 290 -22 23 0 0 53 chr13 1271469 1271491 -100601678 + AT_rich Low_complexity Low_complexity 15 36 0 2173 110 7 20 chr13 1271547 1271847 -100601322 - AluSx SINE Alu -16 296 1 1817 183 7 3 chr13 1272148 1272438 -100600731 + AluJo SINE Alu 1 291 -21 377 249 97 48 chr13 1272487 1272652 -100600517 - L1MC4a LINE L1 -1973 5835 5663 2314 91 7 0 chr13 1272653 1272951 -100600218 - AluSp SINE Alu -13 300 1 1798 127 90 0 chr13 1273069 1273336 -100599833 - AluSx SINE Alu -21 291 1 27 29 0 0 chr13 1273343 1273377 -100599792 + AT_rich Low_complexity Low_complexity 1 34 0 1501 131 0 0 chr13 1273490 1273696 -100599473 - AluSg SINE Alu -90 220 15 1032 81 0 0 chr13 1273698 1273834 -100599335 + AluSc SINE Alu 171 306 -3 1757 87 0 4 chr13 1273982 1274212 -100598957 + AluY SINE Alu 70 298 -13 1772 131 8 4 chr13 1274512 1274772 -100598397 - AluSx SINE Alu -27 285 25 2385 101 0 0 chr13 1274969 1275276 -100597893 + AluSg SINE Alu 1 307 -3 722 180 0 8 chr13 1275550 1275678 -100597491 + FRAM SINE Alu 20 146 -30 2279 85 3 7 chr13 1276312 1276607 -100596562 - AluSg SINE Alu -16 294 1 22 35 0 0 chr13 1276960 1276989 -100596180 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr13 1277072 1277099 -100596070 + AT_rich Low_complexity Low_complexity 1 27 0 275 252 37 19 chr13 1277300 1277407 -100595762 - MER104 DNA Tc2 -61 119 11 23 78 0 0 chr13 1281036 1281087 -100592082 + AT_rich Low_complexity Low_complexity 1 51 0 317 169 15 15 chr13 1282549 1282614 -100590555 + AluJo SINE Alu 71 135 -167 180 77 0 0 chr13 1283495 1283521 -100589648 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 235 279 23 35 chr13 1284353 1284439 -100588730 - L2 LINE L2 0 3313 3229 766 220 57 17 chr13 1284489 1284666 -100588503 - MER5A DNA MER1_type -1 188 5 480 154 13 0 chr13 1285371 1285449 -100587720 - AluJ/FLAM SINE Alu -233 79 1 643 263 83 4 chr13 1285475 1285703 -100587466 + Charlie1 DNA MER1_type 2275 2520 -241 267 206 99 84 chr13 1285774 1285905 -100587264 + Charlie1 DNA MER1_type 2623 2755 -6 810 161 27 0 chr13 1286116 1286265 -100586904 + MER46B DNA MER2_type 26 53 -183 683 203 16 0 chr13 1286269 1286392 -100586777 + FLAM_C SINE Alu 2 126 -7 2300 70 0 3 chr13 1286411 1286697 -100586472 + AluY SINE Alu 26 310 -1 1105 150 0 5 chr13 1286701 1286888 -100586281 + MER46B DNA MER2_type 48 233 -3 861 121 0 0 chr13 1287562 1287686 -100585483 + AluSq/x SINE Alu 1 124 -189 238 146 0 0 chr13 1287686 1287734 -100585435 + Alu SINE Alu 252 299 0 1928 130 10 30 chr13 1287938 1288078 -100585091 + AluSx SINE Alu 1 142 -170 2131 125 3 3 chr13 1288078 1288383 -100584786 + AluSx SINE Alu 1 305 -7 1928 130 10 30 chr13 1288383 1288542 -100584627 + AluSx SINE Alu 142 294 -18 692 257 7 0 chr13 1288552 1288704 -100584465 + FRAM SINE Alu 1 153 -23 4414 176 40 5 chr13 1289062 1289933 -100583236 + L1MC1 LINE L1 5415 6316 -17 22 0 0 0 chr13 1289985 1290007 -100583162 + AT_rich Low_complexity Low_complexity 1 22 0 556 159 28 9 chr13 1290013 1290120 -100583049 - FLAM_A SINE Alu -33 109 1 694 160 0 17 chr13 1290512 1290631 -100582538 - FLAM_A SINE Alu -12 121 5 25 31 0 0 chr13 1291929 1291961 -100581208 + AT_rich Low_complexity Low_complexity 1 32 0 1684 164 14 24 chr13 1292867 1293159 -100580010 + AluJo SINE Alu 1 289 -23 2247 119 0 0 chr13 1293164 1293474 -100579695 + AluSq SINE Alu 1 310 -3 455 134 15 0 chr13 1293480 1293547 -100579622 + AluS SINE Alu 1 68 -245 428 251 48 24 chr13 1293649 1293816 -100579353 - Charlie1a DNA MER1_type -579 876 706 * 1025 274 80 56 chr13 1293810 1294350 -100578819 - Charlie1a DNA MER1_type -902 553 1 186 43 0 0 chr13 1294556 1294579 -100578590 + (T)n Simple_repeat Simple_repeat 1 23 0 548 211 18 0 chr13 1294683 1294792 -100578377 + MIR SINE MIR 64 174 -88 2023 119 0 45 chr13 1296267 1296459 -100576710 - AluSq SINE Alu -17 296 122 2453 80 0 6 chr13 1296459 1296770 -100576399 - AluY SINE Alu -2 309 1 2023 119 0 45 chr13 1296770 1296887 -100576282 - AluSq SINE Alu -191 122 1 1759 168 7 10 chr13 1296984 1297282 -100575887 + AluJo SINE Alu 1 297 -15 2143 98 21 3 chr13 1298297 1298583 -100574586 + AluSg SINE Alu 1 291 -19 423 127 0 0 chr13 1298591 1298662 -100574507 - MER51-int LTR ERV1 -4616 3200 3130 881 99 106 7 chr13 1298689 1298840 -100574329 - MER51B LTR ERV1 0 377 212 2127 113 7 3 chr13 1298846 1299137 -100574032 - AluSx SINE Alu -20 292 1 493 278 40 30 chr13 1299208 1299452 -100573717 - L2 LINE L2 -1011 2303 1988 2239 112 7 0 chr13 1299489 1299784 -100573385 - AluSq SINE Alu -16 297 1 1831 175 0 9 chr13 1299826 1300141 -100573028 - AluJb SINE Alu 0 312 1 2365 52 45 0 chr13 1300352 1300638 -100572531 + AluSx SINE Alu 1 299 -13 2285 106 6 3 chr13 1300706 1301018 -100572151 + AluSq SINE Alu 1 313 0 23 0 0 0 chr13 1301108 1301131 -100572038 + AT_rich Low_complexity Low_complexity 1 23 0 1348 170 48 65 chr13 1301562 1301788 -100571381 + AluJb SINE Alu 1 222 -90 2148 116 7 7 chr13 1301788 1302091 -100571078 - AluSq SINE Alu -10 303 1 1348 170 48 65 chr13 1302091 1302158 -100571011 + AluJb SINE Alu 222 289 -23 843 142 0 22 chr13 1302375 1302509 -100570660 - FLAM_C SINE Alu -1 132 2 1395 171 114 11 chr13 1302519 1302799 -100570370 - AluSx SINE Alu -3 309 1 2145 100 7 0 chr13 1302936 1303226 -100569943 - AluSx SINE Alu -20 292 1 608 125 29 0 chr13 1303228 1303332 -100569837 - MER2 DNA MER2_type -119 226 120 * 1038 161 92 9 chr13 1303330 1303548 -100569621 - MER2 DNA MER2_type -109 236 1 371 182 172 152 chr13 1303548 1303762 -100569407 + L1MC4 LINE L1 6479 6702 -1340 1623 174 14 31 chr13 1303762 1304049 -100569120 - AluJo SINE Alu -30 282 1 371 182 172 152 chr13 1304049 1304131 -100569038 + L1MC4 LINE L1 6702 6781 -1261 2007 189 78 69 chr13 1304132 1304597 -100568572 + L1MC4a LINE L1 7107 7566 -242 2203 110 0 0 chr13 1304597 1304879 -100568290 + 7SLRNA srpRNA srpRNA 20 301 -19 221 83 28 0 chr13 1304879 1304915 -100568254 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2007 189 78 69 chr13 1304915 1305088 -100568081 + L1MC4a LINE L1 7565 7752 -56 2459 81 0 0 chr13 1305141 1305450 -100567719 - AluY SINE Alu -2 309 1 21 36 0 0 chr13 1306961 1306989 -100566180 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr13 1308054 1308077 -100565092 + AT_rich Low_complexity Low_complexity 1 23 0 1768 174 17 3 chr13 1308508 1308807 -100564362 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr13 1310070 1310092 -100563077 + AT_rich Low_complexity Low_complexity 1 22 0 298 241 11 0 chr13 1310780 1310867 -100562302 + Charlie5 DNA MER1_type 26 113 -2499 * 1025 184 136 9 chr13 1310858 1311189 -100561980 + Charlie5 DNA MER1_type 2243 2615 0 2260 105 3 0 chr13 1311575 1311870 -100561299 + AluSx SINE Alu 1 296 -16 2447 54 7 3 chr13 1312390 1312687 -100560482 - AluSp SINE Alu -15 298 1 1024 173 0 0 chr13 1312687 1312843 -100560326 - AluSg/x SINE Alu -15 297 142 2237 107 3 0 chr13 1312852 1313143 -100560026 - AluSp SINE Alu -11 302 11 233 263 161 15 chr13 1313180 1313317 -100559852 - MIR SINE MIR -30 232 76 2290 92 0 22 chr13 1313467 1313782 -100559387 - AluY SINE Alu -3 308 1 27 49 0 0 chr13 1314086 1314127 -100559042 + AT_rich Low_complexity Low_complexity 1 41 0 423 0 0 0 chr13 1314517 1314564 -100558605 + (TG)n Simple_repeat Simple_repeat 2 48 0 2364 113 0 0 chr13 1315583 1315892 -100557277 - AluSq SINE Alu -4 309 1 619 183 122 0 chr13 1316265 1316380 -100556789 - FLAM_A SINE Alu -4 129 1 217 308 131 19 chr13 1316529 1316636 -100556533 - MER5B DNA MER1_type 0 178 60 992 187 43 66 chr13 1316846 1317103 -100556066 - AluJo SINE Alu -39 273 23 455 178 28 161 chr13 1317320 1317368 -100555801 + MER58B DNA MER1_type 186 239 -2181 206 32 32 0 chr13 1317368 1317399 -100555770 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 455 178 28 161 chr13 1317399 1317530 -100555639 + MER58B DNA MER1_type 239 341 0 2119 104 0 48 chr13 1317813 1317976 -100555193 - AluSg SINE Alu -16 294 151 2325 90 3 7 chr13 1317976 1318286 -100554883 - AluSc SINE Alu 0 309 1 2119 104 0 48 chr13 1318286 1318431 -100554738 - AluSg SINE Alu -159 151 1 26 0 0 0 chr13 1319860 1319886 -100553283 + AT_rich Low_complexity Low_complexity 1 26 0 2188 88 7 11 chr13 1319888 1320173 -100552996 - AluSg SINE Alu -26 284 1 488 161 58 0 chr13 1320435 1320522 -100552647 - MER58B DNA MER1_type 0 341 250 2276 204 87 15 chr13 1320573 1321112 -100552057 + L1ME1 LINE L1 5557 6134 -32 1816 127 8 4 chr13 1321112 1321380 -100551789 + AluSq SINE Alu 1 269 -44 2418 74 10 3 chr13 1321518 1321816 -100551353 - AluSq SINE Alu -13 300 1 844 297 67 23 chr13 1321834 1322177 -100550992 + L2 LINE L2 174 531 -2783 1109 75 0 0 chr13 1322303 1322436 -100550733 + AluSq/x SINE Alu 1 133 -179 2393 82 13 0 chr13 1322437 1322742 -100550427 + AluY SINE Alu 1 309 -2 2219 105 0 3 chr13 1322749 1323044 -100550125 + AluSx SINE Alu 1 294 -18 397 306 10 31 chr13 1323044 1323237 -100549932 + L2 LINE L2 1786 1974 -1340 280 233 82 0 chr13 1323245 1323318 -100549851 + MIR SINE MIR 112 190 -72 1967 115 0 0 chr13 1323327 1323588 -100549581 + AluSq SINE Alu 1 261 -52 462 36 0 0 chr13 1323609 1323665 -100549504 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 2445 86 10 0 chr13 1323682 1323986 -100549183 + AluY SINE Alu 1 307 -4 2041 124 0 0 chr13 1324016 1324320 -100548849 + AluSx SINE Alu 1 304 0 207 241 152 73 chr13 1324336 1324527 -100548642 + L2 LINE L2 1978 2183 -1131 511 106 75 32 chr13 1324614 1324708 -100548461 - MER20 DNA MER1_type -73 146 49 1406 126 5 0 chr13 1324718 1324909 -100548260 - AluSg/x SINE Alu -22 290 99 1187 251 17 14 chr13 1325046 1325333 -100547836 + AluJo SINE Alu 1 288 -14 257 108 290 11 chr13 1325485 1325578 -100547591 - Charlie1 DNA MER1_type -6 2755 2637 1328 205 3 53 chr13 1325580 1325635 -100547534 + AluJo SINE Alu 1 57 -255 2088 132 3 3 chr13 1325635 1325930 -100547239 + AluSx SINE Alu 1 295 -17 1328 205 3 53 chr13 1325930 1326177 -100546992 + AluJo SINE Alu 57 288 -24 1772 129 0 50 chr13 1326187 1326466 -100546703 + AluSx SINE Alu 3 267 -45 2349 69 14 0 chr13 1326519 1326807 -100546362 + AluY SINE Alu 3 294 -17 373 243 33 92 chr13 1326807 1326853 -100546316 - L1ME2 LINE L1 -21 6143 6096 1561 191 38 17 chr13 1326853 1327146 -100546023 - AluJb SINE Alu -13 299 1 373 243 33 92 chr13 1327146 1327251 -100545918 - L1ME2 LINE L1 -68 6096 6001 2324 93 0 3 chr13 1327254 1327556 -100545613 - AluY SINE Alu -10 301 1 1177 172 14 28 chr13 1327726 1327941 -100545228 + MER2 DNA MER2_type 1 212 -133 2216 93 3 50 chr13 1327945 1328268 -100544901 - AluSg SINE Alu -2 308 1 691 171 0 66 chr13 1328279 1328431 -100544738 - FLAM_C SINE Alu 0 143 2 245 196 0 54 chr13 1328479 1328490 -100544679 + MER2 DNA MER2_type 268 278 -67 2032 139 0 16 chr13 1328490 1328807 -100544362 - AluSx SINE Alu 0 312 1 245 196 0 54 chr13 1328807 1328851 -100544318 + MER2 DNA MER2_type 278 320 -25 348 175 20 4 chr13 1329364 1329427 -100543742 + AluJ/FLAM SINE Alu 5 60 -242 2086 118 0 10 chr13 1329660 1329957 -100543212 + AluY SINE Alu 1 294 -17 465 200 11 0 chr13 1329964 1330059 -100543110 + MER66B LTR ERV1 295 390 -96 1151 133 0 22 chr13 1330060 1330077 -100543092 + AluSq SINE Alu 120 136 -177 2325 101 0 7 chr13 1330077 1330383 -100542786 + AluSg SINE Alu 1 304 -6 1151 133 0 22 chr13 1330383 1330545 -100542624 + AluSq SINE Alu 136 295 -18 2152 107 3 3 chr13 1330592 1330891 -100542278 + AluSc SINE Alu 2 300 -9 292 266 150 9 chr13 1330917 1331030 -100542139 + MIR SINE MIR 16 144 -64 371 258 148 19 chr13 1331036 1331191 -100541978 + L1MB4 LINE L1 5444 5618 -2190 231 191 0 0 chr13 1331268 1331331 -100541838 - L1MC4 LINE L1 -1340 6702 6640 1693 178 20 13 chr13 1331332 1331635 -100541534 - AluJb SINE Alu -7 305 1 1165 123 0 98 chr13 1331659 1331863 -100541306 + AluSx SINE Alu 1 184 -128 261 94 0 0 chr13 1331863 1331895 -100541274 + Alu SINE Alu 18 49 -251 2218 98 3 0 chr13 1331895 1332180 -100540989 + AluSq SINE Alu 18 303 -10 1225 141 0 0 chr13 1332182 1332359 -100540810 + AluSq SINE Alu 136 312 -1 2264 105 3 0 chr13 1332541 1332837 -100540332 - AluSx SINE Alu -15 297 1 706 153 0 8 chr13 1332860 1332978 -100540191 - AluSg/x SINE Alu -13 297 181 406 203 0 0 chr13 1332979 1333043 -100540126 - AluS SINE Alu -239 64 1 982 224 97 52 chr13 1333069 1333418 -100539751 - MLT1A1 LTR MaLR 0 365 1 853 224 0 6 chr13 1333524 1333694 -100539475 + FRAM SINE Alu 1 169 -7 1805 138 35 18 chr13 1333697 1333997 -100539172 + L1MB4 LINE L1 5831 6139 -41 2419 67 0 20 chr13 1333997 1334296 -100538873 + AluSc SINE Alu 1 293 -16 1805 138 35 18 chr13 1334296 1334335 -100538834 + L1MB4 LINE L1 6139 6176 -4 26 0 0 27 chr13 1334352 1334374 -100538795 + AT_rich Low_complexity Low_complexity 1 23 -13 1675 140 98 0 chr13 1334374 1334638 -100538531 - AluSx SINE Alu -22 290 1 26 0 0 27 chr13 1334638 1334652 -100538517 + AT_rich Low_complexity Low_complexity 23 36 0 870 169 0 0 chr13 1334658 1334788 -100538381 - AluJb SINE Alu -30 282 153 2211 197 23 25 chr13 1334806 1335118 -100538051 - L1M4 LINE L1 -981 5165 4853 2255 129 0 0 chr13 1335118 1335421 -100537748 + AluSx SINE Alu 1 303 -9 2211 197 23 25 chr13 1335421 1335631 -100537538 - L1M4 LINE L1 -1293 4853 4644 1451 98 16 5 chr13 1336060 1336253 -100536916 + AluSq SINE Alu 107 301 -12 1816 127 8 4 chr13 1336391 1336659 -100536510 - AluSq SINE Alu -44 269 1 2276 204 87 15 chr13 1336659 1337198 -100535971 - L1ME1 LINE L1 -32 6134 5557 488 161 58 0 chr13 1337249 1337336 -100535833 + MER58B DNA MER1_type 250 341 0 2311 67 7 7 chr13 1337598 1337924 -100535245 + AluSg SINE Alu 1 326 0 623 126 11 0 chr13 1339387 1339482 -100533687 - AluJo SINE Alu -177 135 40 1319 96 138 0 chr13 1339811 1339999 -100533170 + AluSg/x SINE Alu 82 295 -15 1849 111 62 21 chr13 1340016 1340304 -100532865 - AluJo SINE Alu -12 300 1 6568 70 7 60 chr13 1340354 1341665 -100531504 - SVA Other Other -551 1382 433 272 183 19 135 chr13 1341797 1341833 -100531336 - MIR SINE MIR -111 151 112 2378 87 0 16 chr13 1341833 1342145 -100531024 + AluY SINE Alu 1 307 -4 272 183 19 135 chr13 1342145 1342212 -100530957 - MIR SINE MIR -150 112 60 2120 117 6 22 chr13 1342225 1342542 -100530627 + AluSx SINE Alu 1 312 0 2170 116 3 7 chr13 1342597 1342898 -100530271 + AluSx SINE Alu 1 300 -12 2125 120 10 0 chr13 1342966 1343267 -100529902 - AluSx SINE Alu -8 304 1 1795 103 84 7 chr13 1344245 1344518 -100528651 + AluSx SINE Alu 5 298 -14 1123 171 11 0 chr13 1344518 1344699 -100528470 + AluSg/x SINE Alu 108 290 -22 2012 124 3 3 chr13 1344709 1345008 -100528161 + AluSx SINE Alu 1 299 -13 522 125 0 0 chr13 1345074 1345146 -100528023 + FRAM SINE Alu 22 93 -83 34 24 0 0 chr13 1345156 1345197 -100527972 + AT_rich Low_complexity Low_complexity 1 41 0 2012 92 9 92 chr13 1345226 1345432 -100527737 - AluSx SINE Alu -5 307 138 1609 115 0 0 chr13 1345432 1345641 -100527528 - AluSx SINE Alu -103 209 1 2012 92 9 92 chr13 1345641 1345769 -100527400 - AluSx SINE Alu -174 138 1 2628 197 100 66 chr13 1345770 1346382 -100526787 - L1ME2 LINE L1 -57 6107 5517 1994 97 45 39 chr13 1346382 1346585 -100526584 - AluSp SINE Alu -2 311 104 2458 49 7 0 chr13 1346585 1346873 -100526296 - AluY SINE Alu -21 290 1 1994 97 45 39 chr13 1346873 1346978 -100526191 - AluSp SINE Alu -209 104 1 1729 167 3 23 chr13 1346987 1347292 -100525877 - AluSx SINE Alu -11 301 3 2628 197 100 66 chr13 1347292 1347476 -100525693 - L1ME2 LINE L1 -654 5510 5334 2449 72 3 7 chr13 1347476 1347781 -100525388 - AluY SINE Alu -7 304 1 2628 197 100 66 chr13 1347781 1347887 -100525282 - L1ME2 LINE L1 -830 5334 5233 1749 171 0 37 chr13 1347887 1348208 -100524961 - AluJo SINE Alu 0 312 4 2628 197 100 66 chr13 1348208 1348484 -100524685 - L1ME2 LINE L1 -931 5233 4882 345 270 92 0 chr13 1348508 1348660 -100524509 - L1ME2 LINE L1 -1330 4816 4651 31 0 0 0 chr13 1348956 1348987 -100524182 + AT_rich Low_complexity Low_complexity 1 31 0 341 104 0 0 chr13 1348987 1349035 -100524134 - AluSq/x SINE Alu -170 133 86 978 173 9 64 chr13 1349035 1349255 -100523914 - AluJo SINE Alu -92 220 13 914 218 0 0 chr13 1349267 1349441 -100523728 - AluJb SINE Alu -5 307 134 1404 198 70 4 chr13 1349463 1349736 -100523433 - AluJb SINE Alu -21 291 1 255 31 0 0 chr13 1349741 1349773 -100523396 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 1946 148 0 0 chr13 1349773 1350056 -100523113 - AluSx SINE Alu -29 283 1 704 218 46 25 chr13 1350435 1350521 -100522648 + Looper DNA T2_type 65 148 -1410 732 168 64 0 chr13 1350521 1350646 -100522523 + FLAM_A SINE Alu 1 133 0 704 218 46 25 chr13 1350646 1350780 -100522389 + Looper DNA T2_type 148 293 -1265 198 0 0 0 chr13 1350780 1350802 -100522367 + (TAA)n Simple_repeat Simple_repeat 1 22 0 704 218 46 25 chr13 1350802 1350819 -100522350 + Looper DNA T2_type 293 308 -1250 1271 158 5 5 chr13 1350819 1351021 -100522148 - AluSg/x SINE Alu -25 287 86 398 205 37 81 chr13 1351021 1351182 -100521987 + Looper DNA T2_type 284 437 -1121 1282 170 0 19 chr13 1351195 1351407 -100521762 + AluJb SINE Alu 87 294 -18 887 179 25 6 chr13 1351445 1351607 -100521562 - FRAM SINE Alu -1 165 1 1804 158 10 17 chr13 1352130 1352427 -100520742 - AluSx SINE Alu -17 295 1 275 243 153 0 chr13 1352439 1352550 -100520619 - MIR SINE MIR -13 249 122 944 194 0 0 chr13 1352828 1352988 -100520181 + AluJb SINE Alu 139 298 -14 548 129 24 0 chr13 1353028 1353113 -100520056 - AluSp/q SINE Alu -16 297 211 1309 189 62 38 chr13 1353317 1353476 -100519693 - AluJo SINE Alu -9 303 132 2447 73 0 10 chr13 1353476 1353776 -100519393 - AluSg SINE Alu -13 297 1 1309 189 62 38 chr13 1353776 1353907 -100519262 - AluJo SINE Alu -180 132 6 2112 132 0 0 chr13 1353939 1354234 -100518935 - AluSx SINE Alu -14 298 4 2028 131 0 3 chr13 1354606 1354896 -100518273 - AluSx SINE Alu -15 297 9 1173 154 0 10 chr13 1355303 1355498 -100517671 - AluSg/x SINE Alu 0 310 118 2335 92 0 10 chr13 1355628 1355932 -100517237 - AluSx SINE Alu -11 301 1 2536 55 3 0 chr13 1356158 1356450 -100516719 - AluY SINE Alu -18 293 1 1668 105 158 0 chr13 1356698 1356964 -100516205 - MER51B LTR ERV1 -69 308 1 1590 135 0 4 chr13 1356976 1357205 -100515964 - MER51B-int LTR ERV1 -11 7805 7578 893 124 0 0 chr13 1357206 1357327 -100515842 - MER57-int LTR ERV1 -1471 6066 5946 2657 52 0 0 chr13 1357327 1357636 -100515533 - AluY SINE Alu -2 309 1 21 0 0 0 chr13 1357920 1357941 -100515228 + AT_rich Low_complexity Low_complexity 1 21 0 2279 113 3 0 chr13 1358883 1359194 -100513975 - AluSx SINE Alu 0 312 1 652 246 64 6 chr13 1359227 1359398 -100513771 + MER46C DNA MER2_type 69 249 -89 710 181 88 113 chr13 1359967 1360125 -100513044 - MER46A DNA MER2_type -2499 232 79 1652 160 14 18 chr13 1360125 1360431 -100512738 + AluJb SINE Alu 1 305 0 710 181 88 113 chr13 1360431 1360509 -100512660 - MER46A DNA MER2_type -2652 79 1 1983 130 43 0 chr13 1360865 1361164 -100512005 - AluSx SINE Alu 0 312 1 353 199 128 28 chr13 1361973 1362114 -100511055 - L1MC5 LINE L1 -118 7843 7689 397 284 89 78 chr13 1362274 1362391 -100510778 + L2 LINE L2 2593 2707 -607 1750 146 39 0 chr13 1362391 1362671 -100510498 + AluSx SINE Alu 5 295 -17 397 284 89 78 chr13 1362671 1362835 -100510334 + L2 LINE L2 2707 2877 -437 1922 142 3 3 chr13 1362876 1363164 -100510005 - AluSx SINE Alu -24 288 1 1547 149 54 58 chr13 1363265 1363560 -100509609 - AluJo SINE Alu -17 295 2 321 260 154 0 chr13 1363726 1363849 -100509320 - L2 LINE L2 -1 3312 3171 24 0 0 0 chr13 1367571 1367595 -100505574 + AT_rich Low_complexity Low_complexity 1 24 0 2168 101 3 17 chr13 1367595 1367883 -100505286 - AluSx SINE Alu -24 288 5 444 236 61 61 chr13 1368331 1368560 -100504609 - MER106A DNA MER1_type -5 231 3 436 279 91 20 chr13 1368579 1368776 -100504393 - L2 LINE L2 -519 2795 2585 21 0 0 0 chr13 1371052 1371073 -100502096 + AT_rich Low_complexity Low_complexity 1 21 0 1376 220 54 113 chr13 1371272 1371704 -100501465 - L1ME2 LINE L1 -150 6014 5656 1857 154 0 20 chr13 1371704 1372010 -100501159 - AluJo SINE Alu 0 312 13 1376 220 54 113 chr13 1372010 1372299 -100500870 - L1ME2 LINE L1 -508 5656 5352 22 35 0 0 chr13 1372620 1372649 -100500520 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr13 1373383 1373418 -100499751 + AT_rich Low_complexity Low_complexity 1 35 0 1873 167 10 0 chr13 1373567 1373866 -100499303 - AluJo SINE Alu -10 302 1 21 23 0 47 chr13 1374468 1374487 -100498682 + AT_rich Low_complexity Low_complexity 1 19 -22 2068 146 0 0 chr13 1374487 1374789 -100498380 + AluSx SINE Alu 1 302 -10 21 23 0 47 chr13 1374789 1374812 -100498357 + AT_rich Low_complexity Low_complexity 19 41 0 1311 214 85 25 chr13 1375025 1375283 -100497886 + MER2 DNA MER2_type 1 283 -62 1893 170 0 3 chr13 1375283 1375589 -100497580 - AluJb SINE Alu -7 305 1 1311 214 85 25 chr13 1375589 1375647 -100497522 + MER2 DNA MER2_type 283 336 -9 23 0 0 0 chr13 1375686 1375709 -100497460 + AT_rich Low_complexity Low_complexity 1 23 0 1791 180 10 0 chr13 1375748 1376043 -100497126 + AluJb SINE Alu 1 298 -14 259 289 82 30 chr13 1376255 1376390 -100496779 - Charlie7 DNA MER1_type -1 2611 2470 2556 50 3 0 chr13 1377551 1377849 -100495320 - AluY SINE Alu -12 299 1 201 273 40 71 chr13 1378104 1378203 -100494966 + MER5A DNA MER1_type 17 112 -77 400 224 131 3 chr13 1378407 1378529 -100494640 + MER5A DNA MER1_type 4 131 -47 1135 191 179 0 chr13 1381733 1381984 -100491185 - AluSx SINE Alu -16 296 1 192 77 0 0 chr13 1382277 1382303 -100490866 + (T)n Simple_repeat Simple_repeat 1 26 0 2260 95 3 0 chr13 1382359 1382653 -100490516 + AluSp SINE Alu 2 296 -17 1734 124 4 12 chr13 1383682 1383940 -100489229 + AluJb SINE Alu 42 297 -15 2125 118 10 3 chr13 1384951 1385247 -100487922 + AluSx SINE Alu 1 298 -14 868 163 7 0 chr13 1385417 1385564 -100487605 + AluSg/x SINE Alu 139 286 -26 409 269 50 50 chr13 1386546 1386687 -100486482 + L2 LINE L2 3169 3309 -4 263 196 0 0 chr13 1386704 1386750 -100486419 - MER81 DNA DNA -68 46 1 2173 209 83 6 chr13 1387019 1387551 -100485618 + L1MC1 LINE L1 5760 6332 -1 2233 96 0 0 chr13 1387599 1387881 -100485288 - AluSx SINE Alu -30 282 1 319 300 110 10 chr13 1388911 1389011 -100484158 + MIR SINE MIR 40 149 -113 1149 163 39 0 chr13 1390548 1390751 -100482418 + AluJb SINE Alu 64 274 -38 201 359 57 19 chr13 1391418 1391577 -100481592 + L2 LINE L2 3080 3244 -28 1625 161 73 4 chr13 1392221 1392494 -100480675 + AluJo SINE Alu 1 292 -20 2325 55 24 17 chr13 1392522 1392815 -100480354 + AluY SINE Alu 1 295 -16 751 224 6 6 chr13 1393287 1393443 -100479726 + Tigger1 DNA MER2_type 2 157 -2261 * 1045 124 129 16 chr13 1393432 1393626 -100479543 + Tigger1 DNA MER2_type 2202 2417 -1 777 144 30 23 chr13 1393650 1393782 -100479387 - FLAM_A SINE Alu 0 133 1 280 290 99 38 chr13 1393889 1394261 -100478908 + L1M4 LINE L1 4222 4616 -1530 2472 51 3 26 chr13 1394493 1394805 -100478364 + AluY SINE Alu 1 305 -6 1932 158 0 3 chr13 1395082 1395379 -100477790 - AluJb SINE Alu -16 296 1 344 283 147 28 chr13 1396744 1396921 -100476248 - MIR SINE MIR -56 206 9 975 105 7 7 chr13 1397174 1397317 -100475852 - AluSg/x SINE Alu -10 299 157 1112 99 0 7 chr13 1397383 1397525 -100475644 - AluSq/x SINE Alu -170 143 3 2237 102 27 0 chr13 1397618 1397913 -100475256 - AluSx SINE Alu -9 303 1 2298 100 0 3 chr13 1397982 1398283 -100474886 - AluSx SINE Alu -12 300 1 300 195 53 62 chr13 1398330 1398443 -100474726 - L1M4 LINE L1 -1806 4340 4229 993 168 12 6 chr13 1398460 1398627 -100474542 - FRAM SINE Alu -7 169 2 189 0 0 0 chr13 1398627 1398648 -100474521 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1610 142 67 8 chr13 1398657 1398924 -100474245 - AluSq SINE Alu -28 285 3 499 208 47 0 chr13 1398947 1399076 -100474093 - L1M4 LINE L1 -1958 4188 4054 820 139 16 0 chr13 1399077 1399206 -100473963 + AluJb SINE Alu 1 131 -181 234 0 0 0 chr13 1399262 1399288 -100473881 + (TGG)n Simple_repeat Simple_repeat 1 26 0 1622 189 28 0 chr13 1399288 1399567 -100473602 - AluJo SINE Alu -25 287 1 358 268 77 72 chr13 1399652 1399795 -100473374 - L1M4 LINE L1 -2311 3835 3689 2214 114 3 0 chr13 1399795 1400094 -100473075 - AluSp SINE Alu -13 300 1 358 268 77 72 chr13 1400094 1400185 -100472984 - L1M4 LINE L1 -2457 3689 3600 2089 91 21 14 chr13 1400278 1400564 -100472605 - L1PA7 LINE L1 -2 6152 5865 12541 100 20 31 chr13 1400564 1402628 -100470541 - L1P3 LINE L1 -4369 2092 5 2123 114 0 13 chr13 1402644 1402943 -100470226 - AluSg SINE Alu -15 295 1 976 191 12 18 chr13 1403043 1403211 -100469958 - FAM SINE Alu -8 167 1 1961 135 24 3 chr13 1403214 1403510 -100469659 - AluSx SINE Alu -10 302 1 316 253 41 68 chr13 1403769 1403915 -100469254 - L1MEd LINE L1 -5958 161 20 36 0 0 0 chr13 1406139 1406175 -100466994 + AT_rich Low_complexity Low_complexity 1 36 0 29 28 0 0 chr13 1406579 1406615 -100466554 + AT_rich Low_complexity Low_complexity 1 36 0 355 298 18 30 chr13 1406796 1406964 -100466205 - L1ME LINE L1 -376 5745 5580 22 0 0 0 chr13 1407013 1407035 -100466134 + AT_rich Low_complexity Low_complexity 1 22 0 244 342 0 0 chr13 1407919 1408039 -100465130 + T-rich Low_complexity Low_complexity 1 120 0 1963 96 92 0 chr13 1408999 1409271 -100463898 - AluSg SINE Alu -13 297 1 24 0 0 0 chr13 1409774 1409798 -100463371 + AT_rich Low_complexity Low_complexity 1 24 0 321 251 132 53 chr13 1409863 1410106 -100463063 + HAL1b LINE L1 340 601 -747 190 94 62 0 chr13 1410152 1410184 -100462985 - MER5A DNA MER1_type -148 41 8 629 247 136 49 chr13 1410507 1410876 -100462293 + L1MC4a LINE L1 6120 6520 -1288 226 308 100 8 chr13 1410932 1411052 -100462117 + L1MC4 LINE L1 6870 7000 -1042 1588 180 6 29 chr13 1411211 1411527 -100461642 + AluJo SINE Alu 1 309 -3 1134 237 58 13 chr13 1412161 1412473 -100460696 - MER63C DNA MER1_type -552 378 53 2037 134 10 3 chr13 1412826 1412965 -100460204 + AluSx SINE Alu 1 138 -174 2360 95 0 16 chr13 1412965 1413280 -100459889 + AluSq SINE Alu 1 310 -3 2037 134 10 3 chr13 1413280 1413439 -100459730 + AluSx SINE Alu 138 301 -11 849 228 0 6 chr13 1413439 1413619 -100459550 + AluJb SINE Alu 134 312 0 770 189 0 0 chr13 1414091 1414218 -100458951 + FLAM_A SINE Alu 1 127 -6 262 236 112 0 chr13 1414227 1414316 -100458853 - L1ME LINE L1 -518 5603 5505 461 184 146 0 chr13 1414316 1414419 -100458750 + MER58 DNA MER1_type 1 118 -223 723 239 52 14 chr13 1414421 1414634 -100458535 - MIR SINE MIR -11 251 31 1938 142 33 3 chr13 1414635 1414938 -100458231 - AluSx SINE Alu 0 312 1 845 220 163 72 chr13 1414994 1415152 -100458017 + LTR38 LTR ERV1 1 143 -413 2355 104 0 0 chr13 1415152 1415449 -100457720 + AluSg SINE Alu 1 297 -13 845 220 163 72 chr13 1415449 1415653 -100457516 + LTR38 LTR ERV1 143 396 -160 2007 78 0 0 chr13 1415661 1415905 -100457264 - AluSx SINE Alu -13 299 56 2318 76 14 3 chr13 1416139 1416428 -100456741 - AluSc SINE Alu -17 292 1 2476 68 0 0 chr13 1416646 1416941 -100456228 - AluY SINE Alu -16 295 1 477 49 0 0 chr13 1417136 1417197 -100455972 + AluY SINE Alu 1 61 -257 338 172 180 16 chr13 1417310 1417438 -100455731 + L1MC4 LINE L1 7877 8025 -17 366 265 10 29 chr13 1417636 1417738 -100455431 - L2 LINE L2 0 3313 3214 24 32 0 0 chr13 1417953 1417984 -100455185 + AT_rich Low_complexity Low_complexity 1 31 0 1724 160 27 7 chr13 1417984 1418277 -100454892 + AluJb SINE Alu 1 299 -13 2110 98 52 33 chr13 1418613 1418981 -100454188 - THE1C LTR MaLR 0 375 1 2246 71 3 30 chr13 1419225 1419521 -100453648 - AluSg SINE Alu -22 288 1 216 345 0 0 chr13 1419526 1419584 -100453585 - L2 LINE L2 -14 3258 3201 210 277 77 0 chr13 1419770 1419835 -100453334 + L2 LINE L2 3241 3310 -3 234 150 163 25 chr13 1422217 1422297 -100450872 + L1MC4 LINE L1 7002 7172 -716 231 213 33 16 chr13 1422571 1422632 -100450537 + L1MC4 LINE L1 7498 7559 -483 1745 168 0 3 chr13 1422822 1423113 -100450056 + AluJb SINE Alu 1 290 -22 1154 150 102 88 chr13 1423146 1423420 -100449749 + AluJb SINE Alu 2 279 -33 794 100 9 0 chr13 1423420 1423530 -100449639 - THE1C LTR MaLR -3 372 262 4077 64 0 15 chr13 1423530 1424049 -100449120 - MER9 LTR ERVK 0 511 1 8008 85 19 10 chr13 1424049 1425453 -100447716 - HERVK9 LTR ERVK 0 8032 4582 1855 48 13 0 chr13 1425452 1425680 -100447489 - HERVK9 LTR ERVK -1975 3941 3711 * 14094 56 1 0 chr13 1425680 1427353 -100445816 - HERVK9 LTR ERVK -3130 2786 1113 4393 79 2 7 chr13 1427354 1427925 -100445244 - HERVK9 LTR ERVK -5348 568 1 3883 88 0 6 chr13 1427925 1428439 -100444730 - MER9 LTR ERVK 0 511 1 1429 119 40 36 chr13 1428439 1428690 -100444479 - THE1C LTR MaLR -109 266 15 688 254 69 0 chr13 1428699 1428872 -100444297 + AluJo SINE Alu 98 282 -30 223 159 0 32 chr13 1428915 1428978 -100444191 + (TA)n Simple_repeat Simple_repeat 1 61 0 1773 160 50 0 chr13 1429078 1429359 -100443810 - AluJo SINE Alu -17 295 1 2251 151 81 2 chr13 1429564 1429961 -100443208 + MSTC LTR MaLR 1 428 0 1652 147 4 4 chr13 1429997 1430256 -100442913 + MER2 DNA MER2_type 7 265 -80 1887 202 129 28 chr13 1430418 1430493 -100442676 - REP3 LTR ERV 0 562 496 1780 130 68 17 chr13 1430493 1430786 -100442383 - AluSx SINE Alu -4 308 1 1887 202 129 28 chr13 1430786 1431220 -100441949 - REP3 LTR ERV -66 496 1 607 285 39 81 chr13 1431223 1431364 -100441805 - L1M4 LINE L1 -2678 3468 3323 1763 147 67 7 chr13 1431364 1431649 -100441520 - AluJo SINE Alu -10 302 1 607 285 39 81 chr13 1431649 1431729 -100441440 - L1M4 LINE L1 -2823 3323 3241 2165 115 10 3 chr13 1431729 1432034 -100441135 - AluSx SINE Alu -5 307 1 607 285 39 81 chr13 1432034 1432218 -100440951 - L1M4 LINE L1 -2905 3241 3079 1881 165 3 7 chr13 1432613 1432916 -100440253 - AluJb SINE Alu -10 302 1 361 273 9 0 chr13 1433176 1433286 -100439883 - HAL1 LINE L1 -700 1807 1697 296 197 0 61 chr13 1433291 1433357 -100439812 - MER20 DNA MER1_type -3 216 155 386 326 60 62 chr13 1433357 1433570 -100439599 - L2 LINE L2 -481 2833 2621 1589 189 0 29 chr13 1433570 1433876 -100439293 + AluJo SINE Alu 3 299 -13 2564 63 0 0 chr13 1433882 1434184 -100438985 - AluY SINE Alu -9 302 1 386 326 60 62 chr13 1434184 1434450 -100438719 - L2 LINE L2 -698 2616 2348 2311 106 0 3 chr13 1434450 1434753 -100438416 + AluSx SINE Alu 1 302 -10 427 253 71 22 chr13 1434794 1434976 -100438193 + L1MB2 LINE L1 -723 4294966763 -6839 1453 167 38 88 chr13 1435019 1435384 -100437785 - MER31B LTR ERV1 -119 347 1 2093 239 65 32 chr13 1435744 1436344 -100436825 + L1MB2 LINE L1 801 1638 -4675 2210 144 33 22 chr13 1436344 1436704 -100436465 - THE1B LTR MaLR 0 364 1 2093 239 65 32 chr13 1436704 1436870 -100436299 + L1MB2 LINE L1 1638 1797 -4516 43874 51 6 5 chr13 1436870 1443214 -100429955 + L1PA5 LINE L1 2 6291 0 4126 199 19 59 chr13 1443205 1443219 -100429950 + L1MB2 LINE L1 4638 4651 -1756 * 1851 126 25 14 chr13 1443219 1443535 -100429634 + AluSx SINE Alu 1 319 0 4126 199 19 59 chr13 1443535 1444118 -100429051 + L1MB2 LINE L1 4651 5256 -1151 2065 97 0 91 chr13 1444118 1444438 -100428731 + AluSx SINE Alu 1 291 -21 4126 199 19 59 chr13 1444438 1444469 -100428700 + L1MB2 LINE L1 5256 5287 -1120 2238 102 3 0 chr13 1444469 1444762 -100428407 + AluSp SINE Alu 1 294 -19 4126 199 19 59 chr13 1444762 1445436 -100427733 + L1MB2 LINE L1 5287 5987 -420 2101 103 24 14 chr13 1445436 1445746 -100427423 + AluSx SINE Alu 1 312 0 4126 199 19 59 chr13 1445746 1446111 -100427058 + L1MB2 LINE L1 5987 6204 -203 2254 88 14 0 chr13 1446111 1446405 -100426764 - AluSx SINE Alu -6 306 9 4126 199 19 59 chr13 1446405 1446602 -100426567 + L1MB2 LINE L1 6204 6407 0 329 278 121 31 chr13 1446648 1446871 -100426298 - L2 LINE L2 -1040 2274 2032 408 236 56 23 chr13 1447030 1447246 -100425923 + L1ME3A LINE L1 5845 6122 -48 1690 172 19 19 chr13 1447270 1447578 -100425591 + AluJo SINE Alu 3 310 -2 791 149 0 30 chr13 1447626 1447760 -100425409 + AluJo SINE Alu 4 133 -169 540 246 105 37 chr13 1448187 1448542 -100424627 - MLT1J LTR MaLR -30 481 58 1793 167 0 14 chr13 1448725 1449019 -100424150 - AluSx SINE Alu -22 290 1 1014 171 11 27 chr13 1449645 1449832 -100423337 + AluJo SINE Alu 120 303 -9 333 230 23 0 chr13 1449837 1449924 -100423245 + L1M4 LINE L1 5024 5112 -1034 2331 171 68 16 chr13 1450084 1450568 -100422601 - LTR22 LTR ERVK 0 509 1 278 205 51 39 chr13 1450950 1451028 -100422141 - MIR SINE MIR -64 144 66 2393 67 3 0 chr13 1451343 1451627 -100421542 + AluSp SINE Alu 1 285 -28 180 0 0 0 chr13 1451630 1451650 -100421519 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 2384 74 0 0 chr13 1453220 1453505 -100419664 + AluSx SINE Alu 1 285 -27 8519 49 1 0 chr13 1453578 1454543 -100418626 - LTR5 LTR ERVK -3 966 1 210 118 0 0 chr13 1454548 1454582 -100418587 + (T)n Simple_repeat Simple_repeat 1 34 0 2199 104 3 7 chr13 1454589 1454888 -100418281 + AluSq SINE Alu 1 298 -15 2379 98 0 0 chr13 1455237 1455544 -100417625 + AluSx SINE Alu 1 307 -5 865 186 14 0 chr13 1455546 1455691 -100417478 + AluJo/FRAM SINE Alu 140 286 -26 279 104 0 0 chr13 1455691 1455739 -100417430 + (CA)n Simple_repeat Simple_repeat 2 49 0 2277 113 3 3 chr13 1455831 1456141 -100417028 - AluSq SINE Alu -2 311 2 1986 117 0 66 chr13 1456510 1456615 -100416554 + AluJb SINE Alu 1 111 -201 4093 127 21 68 chr13 1456615 1457340 -100415829 - LTR8 LTR ERV1 0 691 1 1986 117 0 66 chr13 1457340 1457568 -100415601 + AluJb SINE Alu 111 312 0 2301 93 0 0 chr13 1457987 1458277 -100414892 - AluSg SINE Alu -18 292 3 1166 130 0 0 chr13 1458800 1458962 -100414207 + AluSg/x SINE Alu 137 298 -14 1856 122 7 19 chr13 1459429 1459700 -100413469 + AluSx SINE Alu 40 307 -5 5786 21 0 1 chr13 1459700 1460349 -100412820 + L1PA2 LINE L1 5507 6154 -1 1966 139 16 0 chr13 1460500 1460823 -100412346 - L1MA5 LINE L1 0 6300 5973 186 240 0 0 chr13 1460995 1461045 -100412124 + G-rich Low_complexity Low_complexity 3 52 0 21 36 0 0 chr13 1461074 1461102 -100412067 + AT_rich Low_complexity Low_complexity 1 28 0 1704 164 7 45 chr13 1461313 1461623 -100411546 - AluJo SINE Alu -14 298 1 955 227 91 43 chr13 1461646 1461970 -100411199 - MLT1L LTR MaLR -91 524 136 1356 251 40 6 chr13 1461970 1462297 -100410872 - MER58B DNA MER1_type -3 338 1 955 227 91 43 chr13 1462297 1462398 -100410771 - MLT1L LTR MaLR -479 136 41 265 326 80 64 chr13 1462617 1462804 -100410365 - L2 LINE L2 -12 3260 3071 645 284 125 50 chr13 1462972 1463475 -100409694 - LTR67 LTR ERVL -15 542 2 271 264 97 28 chr13 1463487 1463631 -100409538 - L2 LINE L2 -304 2968 2815 21 0 0 0 chr13 1463674 1463695 -100409474 + AT_rich Low_complexity Low_complexity 1 21 0 1736 154 26 4 chr13 1463715 1463987 -100409182 - AluJo SINE Alu -33 279 2 1651 173 0 67 chr13 1464640 1464970 -100408199 - AluJo SINE Alu -4 308 1 415 222 80 91 chr13 1465552 1465616 -100407553 + MIR SINE MIR 86 149 -113 2193 107 3 29 chr13 1465616 1465924 -100407245 + AluSg SINE Alu 1 300 -10 415 222 80 91 chr13 1465924 1466035 -100407134 + MIR SINE MIR 149 259 -3 590 105 0 12 chr13 1466173 1466259 -100406910 - FLAM_A SINE Alu -14 128 44 572 250 0 20 chr13 1466286 1466438 -100406731 - L2 LINE L2 -1 3312 3164 326 281 70 18 chr13 1466450 1466564 -100406605 + L2 LINE L2 3152 3271 -1 1411 179 8 23 chr13 1468118 1468380 -100404789 - AluJb SINE Alu -23 289 32 396 0 0 0 chr13 1468436 1468480 -100404689 + (CA)n Simple_repeat Simple_repeat 2 45 0 2146 143 0 0 chr13 1469140 1469447 -100403722 - AluSx SINE Alu -5 307 1 826 214 21 16 chr13 1469507 1469699 -100403470 - MIR SINE MIR -10 252 60 1899 91 47 14 chr13 1469992 1470294 -100402875 + AluY SINE Alu 1 311 0 1271 119 0 0 chr13 1470294 1470470 -100402699 + AluSg/x SINE Alu 125 300 -10 7461 118 19 16 chr13 1470631 1472698 -100400471 + L1MA1 LINE L1 4234 6302 0 955 228 122 108 chr13 1472760 1473295 -100399874 + MLT1H1 LTR MaLR 1 555 0 1700 132 19 16 chr13 1473768 1474025 -100399144 - AluJb SINE Alu -54 258 1 1351 215 21 30 chr13 1474036 1474366 -100398803 - L1ME1 LINE L1 -5 6161 5835 322 298 119 18 chr13 1474466 1474634 -100398535 + MER5A DNA MER1_type 1 185 -4 391 214 31 31 chr13 1474662 1474760 -100398409 + MIR SINE MIR 40 137 -125 486 278 38 48 chr13 1474771 1474980 -100398189 - L2 LINE L2 -1 3312 3106 625 154 34 26 chr13 1475263 1475380 -100397789 - MLT1J LTR MaLR -326 185 68 7915 35 6 3 chr13 1475749 1477180 -100395989 - L1PA4 LINE L1 -3 6152 4720 12548 31 1 0 chr13 1477180 1478654 -100394515 + L1PA4 LINE L1 3274 4749 -1397 2100 117 21 0 chr13 1478888 1479178 -100393991 + AluSx SINE Alu 1 296 -16 1695 162 179 17 chr13 1479231 1479650 -100393519 + LTR54B LTR ERV1 8 494 -4 2228 97 0 3 chr13 1480034 1480332 -100392837 - AluSx SINE Alu -15 297 1 2010 95 0 70 chr13 1480346 1480662 -100392507 - AluSx SINE Alu -18 294 1 2244 79 0 0 chr13 1480759 1481059 -100392110 - AluY SINE Alu 0 300 1 1242 219 150 27 chr13 1481255 1481621 -100391548 - MLT1G3 LTR MaLR -10 520 110 620 229 15 0 chr13 1481611 1481742 -100391427 - MER119 DNA MER1_type -277 306 174 * 787 183 100 19 chr13 1481752 1481993 -100391176 - MER2 DNA MER2_type 0 345 24 233 205 0 0 chr13 1482100 1482139 -100391030 - MER119 DNA MER1_type -538 45 7 * 993 291 160 11 chr13 1482128 1482565 -100390604 - MLT1G1 LTR MaLR -89 506 5 2190 96 0 32 chr13 1482723 1483036 -100390133 - AluY SINE Alu -8 303 1 370 279 39 8 chr13 1483052 1483181 -100389988 - L1MC5 LINE L1 -48 7913 7781 602 219 150 43 chr13 1483202 1483435 -100389734 - L1ME2 LINE L1 0 6164 5907 1086 153 34 0 chr13 1483437 1483614 -100389555 - AluSg/x SINE Alu -8 304 122 520 193 196 2 chr13 1483620 1483774 -100389395 - L1ME2 LINE L1 -273 5893 5712 2163 117 0 17 chr13 1484126 1484426 -100388743 - AluSx SINE Alu -17 295 1 1833 172 3 0 chr13 1485209 1485499 -100387670 + AluJo SINE Alu 1 291 -21 41 36 0 0 chr13 1487116 1487171 -100385998 + AT_rich Low_complexity Low_complexity 1 55 0 274 324 69 6 chr13 1487348 1487521 -100385648 + MIR SINE MIR 40 223 -39 2136 84 0 84 chr13 1487834 1488154 -100385015 - AluSg SINE Alu -17 293 1 2227 111 3 7 chr13 1488184 1488491 -100384678 - AluSq SINE Alu -7 306 1 21 0 0 0 chr13 1488658 1488679 -100384490 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr13 1488724 1488754 -100384415 + AT_rich Low_complexity Low_complexity 1 30 0 2788 16 0 0 chr13 1489252 1489556 -100383613 + AluY SINE Alu 1 304 -7 2055 100 0 91 chr13 1491575 1491741 -100381428 - AluSq SINE Alu -14 299 176 2244 91 3 7 chr13 1491741 1492050 -100381119 - AluSg1 SINE Alu -1 308 1 2055 100 0 91 chr13 1492050 1492212 -100380957 - AluSq SINE Alu -137 176 1 2331 58 29 23 chr13 1492478 1492811 -100380358 - AluY SINE Alu 0 335 1 25 0 0 0 chr13 1493340 1493365 -100379804 + GC_rich Low_complexity Low_complexity 1 25 0 2256 177 65 0 chr13 1497077 1497461 -100375708 - LTR57 LTR ERVL -2 409 1 215 228 0 35 chr13 1497643 1497700 -100375469 - L2 LINE L2 -93 3220 3166 1245 228 4 0 chr13 1497973 1498219 -100374950 + AluJo SINE Alu 39 285 -27 2471 84 10 0 chr13 1498648 1498957 -100374212 + AluSq SINE Alu 1 312 -1 238 314 0 35 chr13 1499306 1499392 -100373777 + L2 LINE L2 3231 3313 0 292 286 152 0 chr13 1499571 1499683 -100373486 + MIR SINE MIR 124 252 -10 188 273 0 0 chr13 1499687 1499731 -100373438 + MIR SINE MIR 219 262 0 413 285 63 39 chr13 1500110 1500317 -100372852 + L1ME4a LINE L1 5615 5826 -295 2343 74 0 0 chr13 1500336 1500667 -100372502 - AluY SINE Alu 0 331 1 2428 223 48 29 chr13 1500809 1501428 -100371741 - L1ME1 LINE L1 -5 6161 5531 276 250 125 11 chr13 1501526 1501614 -100371555 + MIR SINE MIR 149 246 -16 23 0 0 0 chr13 1501872 1501895 -100371274 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr13 1503061 1503085 -100370084 + AT_rich Low_complexity Low_complexity 1 24 0 2099 122 14 0 chr13 1503158 1503453 -100369716 - AluSx SINE Alu -13 299 1 298 261 80 0 chr13 1503597 1503685 -100369484 + MIR SINE MIR 47 141 -121 1013 165 23 6 chr13 1503800 1503976 -100369193 + AluSg/x SINE Alu 133 311 -1 434 208 15 85 chr13 1504061 1504191 -100368978 + MIR SINE MIR 87 207 -55 6128 130 37 26 chr13 1504590 1505628 -100367541 - L1PA15 LINE L1 -4 6161 5112 1977 125 10 10 chr13 1505628 1505924 -100367245 - AluSq SINE Alu -17 296 1 6128 130 37 26 chr13 1505924 1506112 -100367057 - L1PA15 LINE L1 -1053 5112 4928 28 29 0 0 chr13 1506780 1506815 -100366354 + AT_rich Low_complexity Low_complexity 1 35 0 533 278 211 30 chr13 1506989 1507015 -100366154 - L1MC4a LINE L1 -1897 5911 5891 219 114 0 0 chr13 1507015 1507050 -100366119 + (TA)n Simple_repeat Simple_repeat 1 35 0 533 278 211 30 chr13 1507050 1507393 -100365776 - L1MC4a LINE L1 -1917 5891 5475 872 154 7 7 chr13 1507442 1507585 -100365584 - AluJo SINE Alu -169 143 1 471 230 40 43 chr13 1507628 1507966 -100365203 - HAL1 LINE L1 -1011 1496 1059 2376 112 0 0 chr13 1507971 1508283 -100364886 + AluSq SINE Alu 1 312 -1 335 114 0 0 chr13 1508354 1508398 -100364771 - Alu SINE Alu -257 44 1 367 310 33 26 chr13 1508422 1508542 -100364627 - MLT1J1 LTR MaLR -284 188 78 1580 161 3 71 chr13 1508542 1508865 -100364304 - AluJo SINE Alu -11 301 1 367 310 33 26 chr13 1508865 1508942 -100364227 - MLT1J1 LTR MaLR -394 78 3 1204 321 110 32 chr13 1508947 1509757 -100363412 - HAL1 LINE L1 -1618 889 17 462 65 0 0 chr13 1509781 1509843 -100363326 + (TG)n Simple_repeat Simple_repeat 2 63 0 1505 211 3 23 chr13 1509848 1510147 -100363022 - AluJo SINE Alu -19 293 1 183 42 0 0 chr13 1510335 1510359 -100362810 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 806 214 135 17 chr13 1510414 1510678 -100362491 - L1MDa LINE L1 -3890 2650 2434 2063 146 7 0 chr13 1510678 1510980 -100362189 - AluJb SINE Alu -8 304 1 806 214 135 17 chr13 1510980 1511079 -100362090 - L1MDa LINE L1 -4106 2434 2348 1989 114 14 7 chr13 1511105 1511402 -100361767 + AluSq SINE Alu 1 299 -14 2126 117 19 10 chr13 1511408 1511715 -100361454 + AluSx SINE Alu 1 310 -2 1680 154 57 0 chr13 1511769 1512048 -100361121 - AluJo SINE Alu -17 295 1 350 166 47 24 chr13 1512366 1512451 -100360718 + MLT1E3 LTR MaLR 420 491 -102 828 183 21 0 chr13 1512454 1512596 -100360573 + FRAM SINE Alu 11 155 -21 554 290 100 29 chr13 1512610 1512920 -100360249 + L1ME3A LINE L1 3307 3638 -2508 865 258 34 34 chr13 1513025 1513320 -100359849 + L1ME3A LINE L1 3866 4160 -1986 1272 240 98 54 chr13 1513369 1513869 -100359300 + MLT1E LTR MaLR 70 591 -2 790 214 62 95 chr13 1513973 1514156 -100359013 + L1ME3A LINE L1 4322 4509 -1637 1988 143 0 10 chr13 1514156 1514480 -100358689 + AluSx SINE Alu 1 321 0 790 214 62 95 chr13 1514480 1514596 -100358573 + L1ME3A LINE L1 4509 4627 -1519 2033 146 3 0 chr13 1514596 1514898 -100358271 - AluSq SINE Alu -10 303 1 790 214 62 95 chr13 1514898 1515122 -100358047 + L1ME3A LINE L1 4627 4832 -1314 1749 109 121 6 chr13 1515160 1515171 -100357998 + MSTC LTR MaLR 1 9 -419 2627 98 17 3 chr13 1515171 1515530 -100357639 - THE1B LTR MaLR 0 364 1 1749 109 121 6 chr13 1515530 1515858 -100357311 + MSTC LTR MaLR 9 379 -49 2173 104 44 3 chr13 1515944 1516241 -100356928 + AluSx SINE Alu 1 309 -3 2391 71 0 0 chr13 1516241 1516538 -100356631 + AluY SINE Alu 1 297 -14 381 248 126 9 chr13 1516542 1516756 -100356413 + L1ME3A LINE L1 5041 5279 -867 2232 120 0 7 chr13 1516856 1517165 -100356004 + AluSx SINE Alu 1 307 -5 261 0 0 0 chr13 1517176 1517205 -100355964 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 2346 90 3 3 chr13 1517227 1517527 -100355642 + AluSq SINE Alu 1 300 -13 457 230 171 21 chr13 1517528 1517767 -100355402 + L1P5 LINE L1 5292 5566 -590 306 243 37 7 chr13 1517777 1517913 -100355256 + (TA)n Simple_repeat Simple_repeat 1 140 0 504 275 26 0 chr13 1518030 1518219 -100354950 + L1ME3A LINE L1 5746 5939 -231 248 200 27 45 chr13 1518390 1518500 -100354669 + (TTATA)n Simple_repeat Simple_repeat 3 110 0 2071 119 3 14 chr13 1518825 1519149 -100354020 + AluSx SINE Alu 1 321 0 2107 124 3 3 chr13 1519529 1519836 -100353333 - AluSx SINE Alu -4 308 2 1779 157 67 6 chr13 1520391 1520736 -100352433 + MER47A DNA MER2_type 1 366 0 232 207 264 43 chr13 1520993 1521133 -100352036 + MIR SINE MIR 31 201 -61 298 250 42 0 chr13 1521702 1521774 -100351395 - L2 LINE L2 0 3272 3198 264 274 14 103 chr13 1521884 1522030 -100351139 + L2 LINE L2 3180 3312 -1 1130 149 78 136 chr13 1522131 1522528 -100350641 - MLT1A2 LTR MaLR 0 374 1 2330 104 0 0 chr13 1522815 1523113 -100350056 - AluSx SINE Alu -14 298 1 2484 140 33 13 chr13 1523468 1523926 -100349243 + L1MB4 LINE L1 5714 6180 0 1757 137 74 0 chr13 1523933 1524204 -100348965 + AluJo SINE Alu 1 291 -21 892 111 0 0 chr13 1525331 1525448 -100347721 + AluSq/x SINE Alu 1 117 -196 2100 116 7 7 chr13 1525626 1525920 -100347249 - AluSx SINE Alu -18 294 1 1720 140 74 0 chr13 1526809 1527080 -100346089 - AluJo SINE Alu -21 291 1 1249 155 52 16 chr13 1527087 1527339 -100345830 - L1MB4 LINE L1 0 6180 5920 26 30 0 0 chr13 1528508 1528541 -100344628 + AT_rich Low_complexity Low_complexity 1 33 0 4497 213 43 13 chr13 1528687 1530478 -100342691 + L1M2 LINE L1 1617 3457 -3391 318 26 0 0 chr13 1531872 1531911 -100341258 + (CA)n Simple_repeat Simple_repeat 1 39 0 2228 119 0 0 chr13 1533628 1533922 -100339247 + AluSg SINE Alu 1 294 -16 643 229 68 71 chr13 1534424 1534747 -100338422 - L1MC4 LINE L1 -678 7364 7043 504 283 82 80 chr13 1535090 1535628 -100337541 - L1MEd LINE L1 -4900 1219 681 365 167 12 48 chr13 1535692 1535776 -100337393 - MER94 DNA DNA -48 86 6 422 226 13 69 chr13 1535906 1536065 -100337104 - MER57A LTR ERV1 -4 399 250 2587 198 41 68 chr13 1536189 1536569 -100336600 + L1M2 LINE L1 3374 3763 -3085 2128 79 7 7 chr13 1536569 1536844 -100336325 + L1PA5 LINE L1 5860 6150 -4 2587 198 41 68 chr13 1536844 1537366 -100335803 + L1M2 LINE L1 3763 4252 -2596 2170 158 10 5 chr13 1537372 1537759 -100335410 + Tigger1 DNA MER2_type 2029 2417 -1 199 167 30 0 chr13 1537764 1537830 -100335339 + (TA)n Simple_repeat Simple_repeat 1 68 0 1041 159 36 36 chr13 1538639 1538834 -100334335 - AluJb SINE Alu -117 195 1 380 193 202 0 chr13 1538834 1538948 -100334221 - L1MB4 LINE L1 -269 5909 5773 1907 104 57 13 chr13 1538959 1539275 -100333894 - L1MA4A LINE L1 0 6303 5974 986 94 8 0 chr13 1539276 1539403 -100333766 - AluSq/x SINE Alu -185 128 1 5459 102 28 15 chr13 1539696 1541195 -100331974 - L1PA15 LINE L1 -8 6157 4675 308 309 115 36 chr13 1541196 1541448 -100331721 + L2 LINE L2 2487 2758 -556 310 400 24 28 chr13 1541491 1541746 -100331423 + L2 LINE L2 2839 3092 -180 563 315 90 21 chr13 1541755 1542133 -100331036 - L1MEd LINE L1 -5262 1372 969 407 187 58 79 chr13 1542349 1542488 -100330681 - L1MEd LINE L1 -5924 618 483 2280 108 16 0 chr13 1542656 1542962 -100330207 + AluSx SINE Alu 1 311 -1 1499 261 72 19 chr13 1542974 1543491 -100329678 + L1M4 LINE L1 2 545 -5997 2354 105 0 13 chr13 1543501 1543816 -100329353 + AluY SINE Alu 1 311 0 2220 197 21 0 chr13 1543853 1544289 -100328880 - MER44D DNA MER2_type -61 544 228 679 221 11 103 chr13 1544292 1544554 -100328615 + L1M4 LINE L1 1866 2103 -4543 418 283 18 27 chr13 1544585 1544804 -100328365 + L1M4 LINE L1 2287 2503 -4143 801 287 89 43 chr13 1544832 1545438 -100327731 + L1M4 LINE L1 2616 3249 -3395 3045 193 34 5 chr13 1545557 1546344 -100326825 + L1M4 LINE L1 2462 3271 -2875 1513 222 90 28 chr13 1546426 1546568 -100326601 + L1M4 LINE L1 4009 4141 -2005 180 0 0 0 chr13 1546568 1546588 -100326581 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1513 222 90 28 chr13 1546588 1546989 -100326180 + L1M4 LINE L1 4141 4586 -1560 7182 170 56 43 chr13 1547097 1547812 -100325357 - ERVL LTR ERVL -1512 4252 3547 2064 132 0 20 chr13 1547812 1548116 -100325053 - AluSx SINE Alu -14 298 1 7182 170 56 43 chr13 1548116 1548920 -100324249 - ERVL LTR ERVL -2217 3547 2714 2000 157 0 3 chr13 1548925 1549237 -100323932 + AluJb SINE Alu 1 311 -1 198 0 0 0 chr13 1549245 1549267 -100323902 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr13 1549444 1549466 -100323703 + (A)n Simple_repeat Simple_repeat 1 22 0 6008 188 47 21 chr13 1549476 1550401 -100322768 - ERVL LTR ERVL -3042 2722 1754 2146 124 0 35 chr13 1550401 1550715 -100322454 + AluSx SINE Alu 1 303 -9 6008 188 47 21 chr13 1550715 1551063 -100322106 - ERVL LTR ERVL -4010 1754 1416 536 129 50 0 chr13 1551138 1551239 -100321930 + AluSg/x SINE Alu 203 308 -2 1454 206 4 0 chr13 1551240 1551521 -100321648 - ERVL LTR ERVL -4401 1363 1082 310 130 0 0 chr13 1551521 1551567 -100321602 - Alu SINE Alu -8 292 247 358 206 152 0 chr13 1551667 1551759 -100321410 - ERVL LTR ERVL -4746 1018 913 2169 127 0 3 chr13 1551789 1552097 -100321072 + AluSq SINE Alu 1 307 -6 1155 198 48 17 chr13 1552554 1552847 -100320322 + Charlie1b DNA MER1_type 6 307 -216 231 258 21 21 chr13 1552956 1553053 -100320116 + L1MC4a LINE L1 7244 7340 -468 488 181 181 0 chr13 1553083 1553188 -100319981 - FLAM_A SINE Alu -9 124 1 1955 142 0 0 chr13 1553215 1553516 -100319653 - AluSx SINE Alu 0 301 1 2284 94 0 7 chr13 1553737 1554024 -100319145 - AluSx SINE Alu -7 305 21 874 195 40 0 chr13 1554030 1554204 -100318965 - L1MC1 LINE L1 -8 6325 6145 311 279 65 35 chr13 1554217 1554418 -100318751 - MER20B DNA MER1_type -62 721 515 817 169 0 22 chr13 1554498 1554634 -100318535 + AluJo SINE Alu 3 135 -177 1306 169 56 91 chr13 1554663 1554983 -100318186 + AluJo SINE Alu 1 309 -3 556 152 4 0 chr13 1555002 1555109 -100318060 + L1M4c LINE L1 2322 2431 -3951 337 226 0 14 chr13 1555131 1555237 -100317932 - L1MCa LINE L1 -1339 6983 2006 2120 104 10 3 chr13 1555238 1555527 -100317642 - AluSq SINE Alu -22 291 1 767 130 26 0 chr13 1555548 1555663 -100317506 - FLAM_C SINE Alu -25 118 1 1844 188 12 22 chr13 1555664 1556069 -100317100 - MER74A LTR ERVL -13 545 145 377 218 16 89 chr13 1556175 1556299 -100316870 - MER74A LTR ERVL -423 135 21 2221 118 0 3 chr13 1556302 1556608 -100316561 + AluSx SINE Alu 1 305 -7 1165 163 105 1 chr13 1556608 1556873 -100316296 + L1MB3 LINE L1 5659 5947 -204 23 0 0 0 chr13 1557025 1557048 -100316121 + AT_rich Low_complexity Low_complexity 1 23 0 2295 82 0 3 chr13 1557048 1557340 -100315829 - AluSq SINE Alu -22 291 1 22 0 0 0 chr13 1557726 1557748 -100315421 + AT_rich Low_complexity Low_complexity 1 22 0 1606 142 85 21 chr13 1557748 1558029 -100315140 - AluJb SINE Alu -13 299 1 278 47 0 0 chr13 1558038 1558081 -100315088 - L1MB3 LINE L1 -2 6181 6139 1107 69 0 0 chr13 1558125 1558256 -100314913 - AluSg SINE Alu -179 131 1 1673 171 13 38 chr13 1558259 1558430 -100314739 - AluJo SINE Alu -4 308 147 2200 126 3 0 chr13 1558430 1558739 -100314430 - AluSq SINE Alu -3 310 1 1673 171 13 38 chr13 1558739 1558883 -100314286 - AluJo SINE Alu -165 147 1 1455 167 9 65 chr13 1558884 1558977 -100314192 - L1MB2 LINE L1 -2 6169 6072 2420 77 3 0 chr13 1558977 1559277 -100313892 - AluSp SINE Alu -11 302 2 1455 167 9 65 chr13 1559277 1559524 -100313645 - L1MB2 LINE L1 -99 6072 5848 1396 203 16 4 chr13 1559536 1559792 -100313377 + AluJo SINE Alu 14 272 -40 2092 76 69 0 chr13 1559838 1560115 -100313054 + AluSg1 SINE Alu 1 296 -13 1231 163 34 0 chr13 1560131 1560364 -100312805 - L1MB2 LINE L1 -329 5854 5614 572 143 50 2 chr13 1560364 1560496 -100312673 + MLT1A2 LTR MaLR 1 151 -214 264 200 33 0 chr13 1560612 1560672 -100312497 - L1MB2 LINE L1 -999 5147 5086 1258 65 7 0 chr13 1560674 1560827 -100312342 - AluY SINE Alu -123 188 35 180 0 0 0 chr13 1560881 1560901 -100312268 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1229 225 51 24 chr13 1560927 1561301 -100311868 - L1MB2 LINE L1 -2405 3741 3358 1943 110 10 30 chr13 1561301 1561600 -100311569 - AluSx SINE Alu -19 293 1 847 187 110 38 chr13 1561705 1561914 -100311255 - MLT2B1 LTR ERVL 0 520 297 197 278 200 0 chr13 1562332 1562422 -100310747 + MIR SINE MIR 150 257 -5 1866 113 64 18 chr13 1562423 1562705 -100310464 - AluSx SINE Alu -17 295 1 422 250 180 8 chr13 1562996 1563124 -100310045 - MER5A DNA MER1_type -6 183 34 593 135 0 11 chr13 1563188 1563277 -100309892 + AluJ/FLAM SINE Alu 4 91 -221 870 145 132 7 chr13 1563278 1563430 -100309739 + AluJb SINE Alu 1 171 -141 1914 161 0 0 chr13 1563430 1563703 -100309466 - AluJo SINE Alu -39 273 1 2287 80 3 3 chr13 1563705 1564004 -100309165 - AluSx SINE Alu -12 300 2 339 82 260 14 chr13 1564026 1564099 -100309070 - HY1 scRNA scRNA -11 101 11 1891 131 35 7 chr13 1564120 1564410 -100308759 - AluJb SINE Alu -14 298 1 1801 128 115 10 chr13 1564472 1564777 -100308392 - MER1B DNA MER1_type 0 337 1 1924 132 7 23 chr13 1565035 1565206 -100307963 - AluSx SINE Alu -7 305 140 1998 121 16 3 chr13 1565206 1565513 -100307656 - AluSq SINE Alu 0 313 3 1924 132 7 23 chr13 1565513 1565651 -100307518 - AluSx SINE Alu -172 140 1 1025 136 7 0 chr13 1566119 1566274 -100306895 - AluSc SINE Alu -18 291 136 425 91 0 0 chr13 1566274 1566329 -100306840 + AluSp/q SINE Alu 235 289 -24 569 152 0 10 chr13 1566452 1566551 -100306618 - AluS SINE Alu -214 99 2 1391 205 32 63 chr13 1566592 1566706 -100306463 + L1MB3 LINE L1 4135 4251 -1895 2161 105 7 0 chr13 1566706 1567012 -100306157 + AluSg SINE Alu 1 308 -2 1391 205 32 63 chr13 1567012 1567165 -100306004 + L1MB3 LINE L1 4251 4385 -1761 2036 108 7 3 chr13 1567165 1567462 -100305707 + AluSx SINE Alu 1 298 -14 1391 205 32 63 chr13 1567462 1567636 -100305533 + L1MB3 LINE L1 4385 4563 -1583 2460 204 12 39 chr13 1567637 1568148 -100305021 - MLT2B2 LTR ERVL -18 497 1 4721 169 28 100 chr13 1568148 1568456 -100304713 + L1MB3 LINE L1 4552 4881 -1302 712 194 0 50 chr13 1568456 1568595 -100304574 - AluJo SINE Alu -176 136 5 4721 169 28 100 chr13 1568595 1569080 -100304089 + L1MB3 LINE L1 4881 5400 -783 2156 98 30 0 chr13 1569080 1569375 -100303794 + AluSq SINE Alu 1 304 -9 4721 169 28 100 chr13 1569375 1569540 -100303629 + L1MB3 LINE L1 5400 5575 -608 2190 108 0 0 chr13 1569540 1569836 -100303333 + AluSx SINE Alu 1 296 -16 4721 169 28 100 chr13 1569836 1570270 -100302899 + L1MB3 LINE L1 5575 5924 -259 1640 180 35 96 chr13 1570270 1570657 -100302512 + MSTB1 LTR MaLR 1 357 -75 2287 45 48 0 chr13 1570657 1570948 -100302221 - AluY SINE Alu -6 305 1 1640 180 35 96 chr13 1570948 1571020 -100302149 + MSTB1 LTR MaLR 357 432 0 4721 169 28 100 chr13 1571020 1571256 -100301913 + L1MB3 LINE L1 5924 6176 -7 2012 119 3 3 chr13 1571270 1571564 -100301605 + AluSx SINE Alu 1 294 -18 1067 89 0 7 chr13 1571565 1571711 -100301458 + AluSq/x SINE Alu 1 145 -167 1246 109 18 68 chr13 1571813 1571968 -100301201 - L1PA16 LINE L1 -189 5977 5835 2261 89 0 0 chr13 1571968 1572271 -100300898 - AluSc SINE Alu -5 304 2 1246 109 18 68 chr13 1572271 1572335 -100300834 - L1PA16 LINE L1 -331 5835 5769 602 175 0 0 chr13 1572336 1572433 -100300736 - U13 snRNA snRNA -7 97 1 2263 140 79 0 chr13 1572434 1572812 -100300357 - L1PA16 LINE L1 -385 5781 5374 675 252 41 49 chr13 1572841 1573087 -100300082 + MLT1D LTR MaLR 1 244 -261 1658 166 43 7 chr13 1573087 1573208 -100299961 + AluJo SINE Alu 1 116 -196 192 40 0 0 chr13 1573208 1573233 -100299936 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1658 166 43 7 chr13 1573233 1573412 -100299757 + AluJo SINE Alu 116 312 0 359 199 82 110 chr13 1573542 1573688 -100299481 - MIR3 SINE MIR -22 186 45 186 167 0 125 chr13 1573690 1573738 -100299431 - MIR SINE MIR -1 261 220 190 289 0 0 chr13 1573851 1573903 -100299266 - MER5A DNA MER1_type -2 187 136 2191 89 0 0 chr13 1573913 1574239 -100298930 + AluSg SINE Alu 1 326 0 1123 248 111 46 chr13 1574254 1574598 -100298571 + L1MC4 LINE L1 7538 7921 -121 1788 154 7 10 chr13 1574598 1574903 -100298266 - AluSx SINE Alu -8 304 1 1123 248 111 46 chr13 1574903 1575018 -100298151 + L1MC4 LINE L1 7921 8027 -15 2059 123 3 0 chr13 1575051 1575351 -100297818 - AluSx SINE Alu -11 301 1 1190 194 8 28 chr13 1575400 1575647 -100297522 + AluJb SINE Alu 58 299 -13 318 326 91 23 chr13 1575694 1575869 -100297300 - L1M4 LINE L1 -3271 2875 2689 705 159 153 32 chr13 1576058 1576215 -100296954 + FRAM SINE Alu 1 40 0 366 305 73 13 chr13 1576231 1576382 -100296787 - L1M4 LINE L1 -3716 2430 2271 524 244 37 0 chr13 1576556 1576691 -100296478 + MLT1F1 LTR MaLR 1 140 -427 2066 97 0 67 chr13 1576693 1577023 -100296146 + AluSx SINE Alu 1 308 -4 397 170 0 20 chr13 1577023 1577123 -100296046 + GA-rich Low_complexity Low_complexity 1 98 0 244 123 0 53 chr13 1577290 1577347 -100295822 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 1619 166 63 0 chr13 1577363 1577647 -100295522 + AluJo SINE Alu 1 302 -10 1344 198 32 8 chr13 1577667 1577920 -100295249 + MLT1F1 LTR MaLR 298 556 -11 1785 141 13 19 chr13 1577982 1578295 -100294874 - AluJb SINE Alu -1 311 1 21 0 0 0 chr13 1578651 1578672 -100294497 + AT_rich Low_complexity Low_complexity 1 21 0 2017 116 0 0 chr13 1578750 1579056 -100294113 + AluSx SINE Alu 1 306 0 842 249 39 55 chr13 1579143 1579558 -100293611 + L1MC5 LINE L1 6571 6919 -889 1582 181 37 10 chr13 1579576 1579875 -100293294 - MER65C LTR ERV1 0 461 155 2198 105 0 0 chr13 1579875 1580171 -100292998 + AluSx SINE Alu 1 296 -16 2265 68 17 0 chr13 1580434 1580728 -100292441 - AluSp SINE Alu -14 299 1 1522 167 17 17 chr13 1580845 1581138 -100292031 + AluJb SINE Alu 13 305 -7 1921 79 64 4 chr13 1581698 1581993 -100291176 + AluSq SINE Alu 1 311 0 1745 148 7 0 chr13 1582403 1582717 -100290452 + AluSq SINE Alu 1 316 0 1695 176 3 3 chr13 1582812 1583113 -100290056 + AluJb SINE Alu 1 301 -11 1734 153 10 3 chr13 1583122 1583417 -100289752 + AluJb SINE Alu 1 297 -15 378 176 47 0 chr13 1583644 1583729 -100289440 - Charlie1a DNA MER1_type -459 996 908 1847 143 7 3 chr13 1583731 1584017 -100289152 + AluSx SINE Alu 3 289 -23 892 201 0 0 chr13 1584031 1584205 -100288964 - FRAM SINE Alu -10 166 1 1547 208 139 47 chr13 1584250 1584847 -100288322 - Charlie1a DNA MER1_type -550 905 254 1215 259 110 77 chr13 1584842 1585503 -100287666 + MER21B LTR ERV1 27 709 -154 * 408 234 341 0 chr13 1585534 1585701 -100287468 - Charlie1a DNA MER1_type -1177 278 55 394 313 145 39 chr13 1585856 1586055 -100287114 - L1ME LINE L1 -375 5746 5569 2007 113 3 3 chr13 1586055 1586347 -100286822 + AluSq SINE Alu 1 292 -21 394 313 145 39 chr13 1586347 1586479 -100286690 - L1ME LINE L1 -552 5569 5380 189 0 0 0 chr13 1586735 1586756 -100286413 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1976 100 3 47 chr13 1586773 1587092 -100286077 + AluSg SINE Alu 3 307 -3 1415 191 3 28 chr13 1587095 1587378 -100285791 - AluJo SINE Alu -36 276 1 1539 243 35 35 chr13 1587378 1587489 -100285680 - L1M4 LINE L1 -3167 3215 3105 2426 54 0 3 chr13 1587489 1587784 -100285385 + AluY SINE Alu 1 294 -17 1539 243 35 35 chr13 1587784 1588245 -100284924 - L1M4 LINE L1 -3276 3106 2643 414 193 58 72 chr13 1588254 1588461 -100284708 - L1M4 LINE L1 -3695 2687 2484 754 179 32 105 chr13 1588575 1588854 -100284315 - L1M4 LINE L1 -3861 2521 2260 350 241 0 0 chr13 1588853 1588932 -100284237 - L1MB2 LINE L1 -163 6008 5930 * 2095 88 7 0 chr13 1588932 1589215 -100283954 - AluSx SINE Alu -15 297 13 2287 77 3 16 chr13 1589232 1589544 -100283625 - AluY SINE Alu -3 308 1 771 90 0 0 chr13 1590207 1590307 -100282862 - AluSp/q SINE Alu -19 294 195 498 290 209 18 chr13 1590344 1590679 -100282490 - HAL1 LINE L1 -2003 504 106 1833 130 3 7 chr13 1590742 1591027 -100282142 - AluJb SINE Alu -7 305 22 1692 161 7 3 chr13 1591127 1591304 -100281865 - AluJo SINE Alu -2 310 135 182 61 0 30 chr13 1591304 1591337 -100281832 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1601 156 18 14 chr13 1591337 1591619 -100281550 - AluJo SINE Alu -29 283 1 1692 161 7 3 chr13 1591619 1591745 -100281424 - AluJo SINE Alu -176 136 5 2495 48 0 0 chr13 1592217 1592526 -100280643 - AluY SINE Alu -2 309 1 970 165 0 12 chr13 1592526 1592682 -100280487 - AluSg/x SINE Alu -15 295 140 2115 107 3 0 chr13 1592691 1592982 -100280187 - AluSp SINE Alu -11 302 11 297 285 146 18 chr13 1592991 1593156 -100280013 - MIR SINE MIR -1 261 76 2251 75 0 22 chr13 1593303 1593621 -100279548 - AluY SINE Alu 0 311 1 1844 80 109 4 chr13 1593632 1593906 -100279263 - AluSg SINE Alu -7 303 1 2241 91 3 0 chr13 1594462 1594759 -100278410 - AluY SINE Alu -13 298 1 504 216 78 44 chr13 1595296 1595322 -100277847 + L1 LINE L1 3155 3179 -2967 2214 103 0 3 chr13 1595322 1595633 -100277536 + AluSx SINE Alu 1 310 -2 504 216 78 44 chr13 1595633 1595811 -100277358 + L1 LINE L1 3179 3366 -2780 2010 112 7 13 chr13 1595812 1596117 -100277052 + AluSg SINE Alu 1 303 -7 2188 76 0 14 chr13 1596250 1596572 -100276597 + AluY SINE Alu 1 318 0 562 130 0 0 chr13 1596584 1596661 -100276508 + AluJ/FLAM SINE Alu 3 79 -233 1175 145 0 0 chr13 1597120 1597299 -100275870 - AluSg/x SINE Alu -1 309 131 2529 55 0 0 chr13 1597299 1597610 -100275559 - AluY SINE Alu 0 311 1 1713 175 0 9 chr13 1597821 1598136 -100275033 + AluJb SINE Alu 1 312 0 2122 114 7 0 chr13 1598178 1598476 -100274693 + AluSq SINE Alu 1 300 -13 502 278 40 30 chr13 1598510 1598754 -100274415 + L2 LINE L2 1988 2303 -1011 2024 113 7 3 chr13 1598825 1599116 -100274053 + AluSx SINE Alu 1 292 -20 959 99 106 7 chr13 1599122 1599273 -100273896 + MER51B LTR ERV1 212 377 0 266 86 0 0 chr13 1599273 1599308 -100273861 + MER51B-int LTR ERV1 1 35 -7781 * 463 127 0 0 chr13 1599300 1599371 -100273798 + MER51-int LTR ERV1 3130 3200 -4616 2016 101 21 3 chr13 1599379 1599665 -100273504 - AluSg SINE Alu -19 291 1 291 93 0 0 chr13 1599667 1599710 -100273459 + MER51-int LTR ERV1 6086 6128 -1688 1371 117 5 5 chr13 1599719 1599933 -100273236 + AluY SINE Alu 2 215 -96 2174 180 99 61 chr13 1600044 1600074 -100273095 - LTR12 LTR ERV1 -199 515 488 1278 172 20 24 chr13 1600074 1600371 -100272798 + AluY SINE Alu 1 296 -15 2174 180 99 61 chr13 1600371 1600922 -100272247 - LTR12 LTR ERV1 -226 488 1 844 187 0 26 chr13 1600922 1601077 -100272092 + AluJb SINE Alu 150 300 -12 1882 118 7 29 chr13 1601339 1601645 -100271524 + AluSq SINE Alu 1 299 -14 377 229 0 95 chr13 1601645 1601744 -100271425 + L1MC4 LINE L1 6615 6703 -1339 194 170 0 21 chr13 1601747 1601794 -100271375 + (TA)n Simple_repeat Simple_repeat 1 46 0 602 234 54 36 chr13 1601882 1601934 -100271235 - MER45A DNA AcHobo -1411 170 120 2333 84 7 0 chr13 1601934 1602244 -100270925 - AluSp SINE Alu 0 313 2 602 234 54 36 chr13 1602244 1602358 -100270811 - MER45A DNA AcHobo -1461 120 1 1742 149 0 40 chr13 1602421 1602744 -100270425 - AluSx SINE Alu -2 310 1 881 210 46 50 chr13 1602744 1603025 -100270144 - L1MC5 LINE L1 -528 7433 7154 1596 90 9 0 chr13 1603029 1603251 -100269918 + AluSq SINE Alu 1 224 -89 1054 148 6 0 chr13 1603357 1603526 -100269643 - AluSg/x SINE Alu -11 301 132 315 263 114 57 chr13 1603526 1603701 -100269468 - MIR SINE MIR -72 190 6 1532 95 26 35 chr13 1604235 1604467 -100268702 - MER30 DNA MER1_type 0 230 1 25 75 0 0 chr13 1606372 1606425 -100266744 + GC_rich Low_complexity Low_complexity 1 53 0 1681 157 17 27 chr13 1608146 1608439 -100264730 + AluJb SINE Alu 1 290 -22 831 206 6 6 chr13 1608453 1608613 -100264556 + FRAM SINE Alu 2 161 -5 252 0 0 0 chr13 1608634 1608662 -100264507 + (CA)n Simple_repeat Simple_repeat 2 29 0 464 286 24 16 chr13 1608734 1608860 -100264309 - HAL1 LINE L1 -1342 1165 1039 2179 105 0 0 chr13 1608860 1609154 -100264015 + AluSx SINE Alu 1 294 -18 1462 186 14 18 chr13 1609154 1609433 -100263736 - MER65C LTR ERV1 -183 278 1 459 253 74 32 chr13 1609446 1609501 -100263668 + Charlie1a DNA MER1_type 103 154 -2607 1987 131 7 3 chr13 1609501 1609806 -100263363 + AluSx SINE Alu 1 306 -6 459 253 74 32 chr13 1609806 1609940 -100263229 + Charlie1a DNA MER1_type 154 300 -1155 2146 97 0 13 chr13 1609941 1610239 -100262930 + AluSc SINE Alu 1 294 -15 2119 99 3 3 chr13 1610239 1610531 -100262638 + AluSp SINE Alu 1 292 -21 201 195 0 0 chr13 1610602 1610643 -100262526 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 359 177 16 0 chr13 1610643 1610705 -100262464 + Charlie1a DNA MER1_type 351 413 -1042 1955 105 54 0 chr13 1610705 1611000 -100262169 + AluSx SINE Alu 1 311 -1 812 160 0 0 chr13 1611000 1611125 -100262044 - AluJo/FLAM SINE Alu -175 127 3 513 155 21 10 chr13 1611125 1611222 -100261947 - LTR56 LTR ERV1 -303 142 45 1258 148 6 107 chr13 1611223 1611454 -100261715 - AluJo SINE Alu 0 312 124 2258 87 0 0 chr13 1611454 1611752 -100261417 + AluY SINE Alu 1 298 -13 1258 148 6 107 chr13 1611752 1611857 -100261312 - AluJo SINE Alu -188 124 10 296 65 0 43 chr13 1611872 1611918 -100261251 - LTR56 LTR ERV1 -394 51 8 305 181 24 60 chr13 1611920 1612003 -100261166 - MER21B LTR ERV1 -655 208 129 277 203 29 58 chr13 1612066 1612135 -100261034 - MER21B LTR ERV1 -755 108 42 566 171 9 9 chr13 1612149 1612254 -100260915 + FRAM SINE Alu 20 124 -52 207 88 0 0 chr13 1612270 1612304 -100260865 + (TTAAA)n Simple_repeat Simple_repeat 2 35 0 254 254 45 37 chr13 1612362 1612496 -100260673 - L1MEd LINE L1 -5981 138 4 1269 168 10 69 chr13 1612523 1612642 -100260527 + AluJb SINE Alu 1 125 -187 1926 131 3 7 chr13 1612642 1612947 -100260222 + AluSg SINE Alu 1 304 -6 1269 168 10 69 chr13 1612947 1612981 -100260188 + AluJb SINE Alu 125 159 -153 2149 104 7 0 chr13 1612981 1613278 -100259891 + AluSp SINE Alu 1 299 -14 786 192 7 13 chr13 1613278 1613429 -100259740 + AluJb SINE Alu 139 288 -24 1269 168 10 69 chr13 1613278 1613427 -100259742 + AluJb SINE Alu 159 286 -26 23 33 0 0 chr13 1613493 1613523 -100259646 + AT_rich Low_complexity Low_complexity 1 30 0 384 257 119 38 chr13 1613527 1613719 -100259450 - L2 LINE L2 -639 2675 2463 2171 73 0 14 chr13 1613719 1614005 -100259164 + AluY SINE Alu 1 282 -29 384 257 119 38 chr13 1614005 1614022 -100259147 - L2 LINE L2 -851 2463 2449 300 226 89 8 chr13 1614158 1614282 -100258887 + AluSq/x SINE Alu 3 136 -166 1565 183 0 14 chr13 1614587 1614882 -100258287 + AluJo SINE Alu 1 291 -21 261 287 136 10 chr13 1614892 1615053 -100258116 + MIR SINE MIR 44 230 -32 198 0 0 0 chr13 1615714 1615736 -100257433 + (ATG)n Simple_repeat Simple_repeat 1 22 0 1907 122 0 34 chr13 1616486 1616813 -100256356 - AluSq SINE Alu 0 317 1 32 26 0 0 chr13 1617027 1617066 -100256103 + AT_rich Low_complexity Low_complexity 1 39 0 1868 119 3 11 chr13 1617111 1617423 -100255746 - AluSq SINE Alu 0 310 1 1849 161 51 106 chr13 1617563 1617672 -100255497 - MER67A LTR ERV1 0 543 430 1363 174 51 11 chr13 1617672 1617947 -100255222 + AluJo SINE Alu 1 286 -26 1849 161 51 106 chr13 1617947 1617959 -100255210 - MER67A LTR ERV1 -113 430 419 1939 107 3 17 chr13 1617959 1618094 -100255075 + AluSx SINE Alu 3 138 -174 2188 113 3 0 chr13 1618094 1618405 -100254764 + AluSp SINE Alu 1 312 -1 1939 107 3 17 chr13 1618405 1618558 -100254611 + AluSx SINE Alu 138 287 -25 2109 95 3 29 chr13 1618559 1618874 -100254295 + AluSg SINE Alu 1 307 -3 1849 161 51 106 chr13 1618874 1619220 -100253949 - MER67A LTR ERV1 -123 420 99 2019 122 6 10 chr13 1619220 1619532 -100253637 + AluSx SINE Alu 1 311 -1 1087 151 0 0 chr13 1619532 1619698 -100253471 + AluSg/x SINE Alu 124 289 -21 1836 160 0 10 chr13 1619709 1620022 -100253147 + AluJo SINE Alu 1 310 -2 183 42 0 0 chr13 1620077 1620101 -100253068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1859 85 0 0 chr13 1620103 1620338 -100252831 - AluSg SINE Alu -75 235 1 2156 103 7 0 chr13 1620396 1620696 -100252473 - AluSp SINE Alu -11 302 1 1248 95 0 0 chr13 1620698 1620866 -100252303 - AluSg/x SINE Alu -10 302 135 3609 81 35 2 chr13 1621093 1621577 -100251592 - LTR3b LTR ERVK 0 500 1 1850 134 0 7 chr13 1622574 1622872 -100250297 + AluSx SINE Alu 14 309 -3 1085 114 0 13 chr13 1622872 1623061 -100250108 + AluSg/x SINE Alu 134 312 0 2043 120 3 0 chr13 1623073 1623374 -100249795 + AluSq SINE Alu 1 302 -11 2154 69 7 7 chr13 1623874 1624165 -100249004 - AluY SINE Alu -20 291 1 387 247 116 37 chr13 1624167 1624357 -100248812 + L2 LINE L2 2471 2675 -639 23 33 0 0 chr13 1624361 1624391 -100248778 + AT_rich Low_complexity Low_complexity 1 30 0 1269 168 10 69 chr13 1624457 1624606 -100248563 - AluJb SINE Alu -26 286 130 2149 104 7 0 chr13 1624606 1624903 -100248266 - AluSp SINE Alu -14 299 1 1269 168 10 69 chr13 1624903 1624937 -100248232 - AluJb SINE Alu -182 130 96 1926 131 3 7 chr13 1624937 1625242 -100247927 - AluSg SINE Alu -6 304 1 1269 168 10 69 chr13 1625242 1625361 -100247808 - AluJb SINE Alu -216 96 1 254 254 45 37 chr13 1625388 1625522 -100247647 + L1MEd LINE L1 4 138 -5981 207 88 0 0 chr13 1625580 1625614 -100247555 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 566 171 9 9 chr13 1625630 1625735 -100247434 - FRAM SINE Alu -52 124 20 277 203 29 58 chr13 1625749 1625818 -100247351 + MER21B LTR ERV1 42 108 -755 305 181 24 60 chr13 1625881 1625964 -100247205 + MER21B LTR ERV1 129 208 -655 296 65 0 43 chr13 1625966 1626012 -100247157 + LTR56 LTR ERV1 8 51 -394 1258 148 6 107 chr13 1626027 1626132 -100247037 + AluJo SINE Alu 10 124 -188 2258 87 0 0 chr13 1626132 1626430 -100246739 - AluY SINE Alu -13 298 1 1258 148 6 107 chr13 1626430 1626661 -100246508 + AluJo SINE Alu 124 312 0 513 155 21 10 chr13 1626662 1626759 -100246410 + LTR56 LTR ERV1 45 142 -303 820 154 0 0 chr13 1626759 1626882 -100246287 + AluJo/FLAM SINE Alu 3 125 -187 2144 120 0 7 chr13 1626884 1627192 -100245977 - AluSx SINE Alu -1 311 6 1215 97 16 3 chr13 1627200 1627393 -100245776 + LTR56 LTR ERV1 270 437 0 2055 103 13 17 chr13 1627459 1627761 -100245408 + AluSx SINE Alu 1 301 -11 640 254 53 37 chr13 1627776 1627965 -100245204 + MER21B LTR ERV1 321 512 -351 1920 142 17 0 chr13 1627965 1628261 -100244908 - AluSx SINE Alu -11 301 1 207 0 0 0 chr13 1628263 1628286 -100244883 + (T)n Simple_repeat Simple_repeat 1 23 0 765 210 0 0 chr13 1628292 1628430 -100244739 + FRAM SINE Alu 3 140 -36 572 186 108 44 chr13 1628451 1628782 -100244387 - MER39 LTR ERV1 -262 445 4 2289 87 10 0 chr13 1628913 1629246 -100243923 + AluSp SINE Alu 1 336 0 2087 183 70 47 chr13 1629272 1629314 -100243855 - MER31A LTR ERV1 -4 481 441 2195 76 10 16 chr13 1629314 1629628 -100243541 + AluSx SINE Alu 1 312 0 2087 183 70 47 chr13 1629628 1630055 -100243114 - MER31A LTR ERV1 -44 441 1 375 275 72 62 chr13 1630077 1630270 -100242899 + L1MEd LINE L1 694 888 -5231 390 156 12 0 chr13 1630270 1630344 -100242825 + L1 LINE L1 5180 5259 -887 1951 119 3 7 chr13 1630348 1630641 -100242528 - AluSq SINE Alu -21 292 1 315 118 29 59 chr13 1630682 1630732 -100242437 + L1M LINE L1 5258 5307 -871 868 146 0 8 chr13 1630732 1630862 -100242307 + FLAM_C SINE Alu 1 129 -4 315 118 29 59 chr13 1630862 1630879 -100242290 + L1M LINE L1 5307 5323 -855 1602 173 3 22 chr13 1630879 1631197 -100241972 + AluSx SINE Alu 1 312 0 475 130 0 0 chr13 1631225 1631294 -100241875 + AluS SINE Alu 2 70 -242 2109 100 43 0 chr13 1631676 1631975 -100241194 + AluSx SINE Alu 1 312 0 338 97 0 32 chr13 1631977 1632039 -100241130 + L1PA16 LINE L1 6098 6157 -9 711 219 20 13 chr13 1632397 1632548 -100240621 + FRAM SINE Alu 11 162 -14 545 230 40 8 chr13 1632599 1632725 -100240444 + FLAM_A SINE Alu 1 130 -3 2267 91 0 0 chr13 1632872 1633169 -100240000 + AluSx SINE Alu 1 297 -15 1585 194 3 13 chr13 1633701 1634010 -100239159 + AluJo SINE Alu 1 306 -6 1683 164 21 0 chr13 1634014 1634301 -100238868 + AluSx SINE Alu 4 296 -16 324 176 44 15 chr13 1634340 1634408 -100238761 - L1ME LINE L1 -603 5561 5492 840 145 0 0 chr13 1634409 1634540 -100238629 + FLAM_C SINE Alu 2 132 -1 364 163 90 14 chr13 1634564 1634677 -100238492 - L1ME LINE L1 -801 5345 5227 810 144 0 85 chr13 1634681 1634717 -100238452 - FLAM_C SINE Alu -171 141 104 2112 99 7 10 chr13 1634717 1635020 -100238149 + AluSq SINE Alu 1 302 -11 810 144 0 85 chr13 1635020 1635136 -100238033 - FLAM_C SINE Alu -208 104 2 783 202 31 73 chr13 1635139 1635426 -100237743 - L1ME LINE L1 -918 5228 4954 616 267 107 21 chr13 1635439 1635720 -100237449 + L1M4 LINE L1 4726 5030 -1116 1113 193 148 37 chr13 1635963 1636233 -100236936 + AluJo SINE Alu 3 302 0 2035 123 3 0 chr13 1636369 1636669 -100236500 + AluSx SINE Alu 1 301 -11 2144 96 0 7 chr13 1636837 1637138 -100236031 + AluSx SINE Alu 1 299 -13 2050 90 43 13 chr13 1637289 1637589 -100235580 - AluSx SINE Alu -3 309 1 1809 158 7 0 chr13 1637683 1637975 -100235194 + AluJb SINE Alu 5 298 -14 2188 78 41 0 chr13 1637977 1638270 -100234899 + AluY SINE Alu 1 305 -6 1509 122 95 8 chr13 1638293 1638555 -100234614 + AluSg SINE Alu 1 285 -25 922 191 0 0 chr13 1638562 1638724 -100234445 + AluJb SINE Alu 134 295 -17 895 194 56 6 chr13 1638954 1639134 -100234035 + MER20 DNA MER1_type 1 189 -30 436 247 37 74 chr13 1639147 1639337 -100233832 + HAL1 LINE L1 2194 2376 -131 828 233 18 0 chr13 1639345 1639508 -100233661 + FAM SINE Alu 1 166 -9 1584 153 21 28 chr13 1639514 1639801 -100233368 + AluJb SINE Alu 2 286 -26 32 57 0 0 chr13 1639801 1639854 -100233315 + AT_rich Low_complexity Low_complexity 1 53 0 309 241 86 69 chr13 1639854 1639970 -100233199 + HAL1 LINE L1 2367 2484 -23 807 167 48 12 chr13 1639974 1640142 -100233027 - AluJb SINE Alu -4 308 135 484 149 11 23 chr13 1640142 1640229 -100232940 - Tigger3(Golem) DNA MER2_type -2931 98 13 738 318 82 23 chr13 1640240 1640583 -100232586 + L2 LINE L2 2371 2733 -581 2259 77 0 0 chr13 1640627 1640912 -100232257 - AluSx SINE Alu -27 285 1 2361 45 41 0 chr13 1641062 1641354 -100231815 - AluY SINE Alu -7 304 1 23 68 0 0 chr13 1641369 1641413 -100231756 + AT_rich Low_complexity Low_complexity 1 44 0 249 100 60 0 chr13 1641898 1641948 -100231221 - L1MB7 LINE L1 0 6184 6132 * 1902 191 66 41 chr13 1641943 1642328 -100230841 - L1MB8 LINE L1 -104 6074 5673 2071 96 0 13 chr13 1642328 1642629 -100230540 - AluSg1 SINE Alu -12 297 1 1902 191 66 41 chr13 1642629 1642726 -100230443 - L1MB8 LINE L1 -505 5673 5580 1150 123 22 0 chr13 1642731 1642910 -100230259 - AluSg/x SINE Alu -9 301 119 619 141 106 173 chr13 1642929 1643027 -100230142 - L1MB8 LINE L1 -587 5597 5494 1774 160 0 19 chr13 1643027 1643345 -100229824 - AluSx SINE Alu 0 312 1 619 141 106 173 chr13 1643345 1643429 -100229740 - L1MB8 LINE L1 -690 5494 5434 2083 125 0 6 chr13 1643429 1643741 -100229428 - AluSx SINE Alu -2 310 1 619 141 106 173 chr13 1643741 1643812 -100229357 - L1MB8 LINE L1 -750 5434 5360 2072 122 0 0 chr13 1644965 1645261 -100227908 + AluSx SINE Alu 1 296 -16 31 26 0 0 chr13 1645579 1645617 -100227552 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr13 1645791 1645813 -100227356 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr13 1645974 1645995 -100227174 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 740 179 8 0 chr13 1645999 1646116 -100227053 - FLAM_C SINE Alu -15 118 1 1939 138 3 0 chr13 1646289 1646587 -100226582 + AluSx SINE Alu 1 299 -13 535 248 24 0 chr13 1646934 1647059 -100226110 + FLAM_A SINE Alu 2 129 -4 2025 90 57 13 chr13 1647118 1647438 -100225731 - AluSq SINE Alu 0 313 1 1859 148 3 0 chr13 1647473 1647763 -100225406 + AluSc SINE Alu 1 291 -18 1924 132 7 23 chr13 1648231 1648369 -100224800 + AluSx SINE Alu 1 140 -172 1998 121 16 3 chr13 1648369 1648676 -100224493 + AluSq SINE Alu 3 313 0 1924 132 7 23 chr13 1648676 1648847 -100224322 + AluSx SINE Alu 140 305 -7 1801 128 115 10 chr13 1649105 1649410 -100223759 + MER1B DNA MER1_type 1 337 0 1891 131 35 7 chr13 1649472 1649762 -100223407 + AluJb SINE Alu 1 298 -14 339 82 260 14 chr13 1649783 1649856 -100223313 + HY1 scRNA scRNA 11 101 -11 2227 93 3 13 chr13 1649878 1650188 -100222981 + AluSq SINE Alu 2 308 -5 3609 81 35 2 chr13 1651281 1651765 -100221404 + LTR3b LTR ERVK 1 500 0 1248 95 0 0 chr13 1651992 1652160 -100221009 + AluSg/x SINE Alu 135 302 -10 2156 103 7 0 chr13 1652162 1652462 -100220707 + AluSp SINE Alu 1 302 -11 1859 85 0 0 chr13 1652520 1652755 -100220414 + AluSg SINE Alu 1 235 -75 183 42 0 0 chr13 1652757 1652781 -100220388 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1836 160 0 10 chr13 1652836 1653149 -100220020 - AluJo SINE Alu -2 310 1 1087 151 0 0 chr13 1653160 1653326 -100219843 - AluSg/x SINE Alu -21 291 126 2019 122 6 10 chr13 1653326 1653638 -100219531 - AluSx SINE Alu -1 311 1 1849 161 51 106 chr13 1653638 1653984 -100219185 + MER67A LTR ERV1 99 463 -80 2109 95 3 29 chr13 1653984 1654299 -100218870 - AluSg SINE Alu -3 307 1 1939 107 3 17 chr13 1654300 1654453 -100218716 - AluSx SINE Alu -25 287 138 2188 113 3 0 chr13 1654453 1654764 -100218405 - AluSp SINE Alu -1 312 1 1939 107 3 17 chr13 1654764 1654899 -100218270 - AluSx SINE Alu -174 138 3 1849 161 51 106 chr13 1654899 1654911 -100218258 + MER67A LTR ERV1 463 474 -69 1363 174 51 11 chr13 1654911 1655186 -100217983 - AluJo SINE Alu -26 286 1 1849 161 51 106 chr13 1655186 1655295 -100217874 + MER67A LTR ERV1 474 543 0 2106 122 0 28 chr13 1655435 1655572 -100217597 + AluSx SINE Alu 1 140 -172 2251 94 0 3 chr13 1655572 1655881 -100217288 + AluSg SINE Alu 1 308 -2 2477 64 0 0 chr13 1655883 1656194 -100216975 + AluY SINE Alu 1 311 0 2106 122 0 28 chr13 1656194 1656373 -100216796 + AluSx SINE Alu 141 311 -1 559 317 107 7 chr13 1656376 1656676 -100216493 + L1MEc LINE L1 100 429 -5967 1865 123 0 60 chr13 1656679 1656857 -100216312 - AluSx SINE Alu -15 297 145 1972 127 0 16 chr13 1656857 1657164 -100216005 - AluSx SINE Alu -10 302 1 1865 123 0 60 chr13 1657164 1657301 -100215868 - AluSx SINE Alu -167 145 1 888 226 147 55 chr13 1657306 1657698 -100215471 + MER57A LTR ERV1 1 401 -2 679 276 50 40 chr13 1657917 1658010 -100215159 + Charlie1a DNA MER1_type 1 92 -2669 2315 167 17 32 chr13 1658010 1658198 -100214971 - MER65C LTR ERV1 0 461 272 2283 82 0 0 chr13 1658198 1658490 -100214679 + AluY SINE Alu 2 293 -18 2315 167 17 32 chr13 1658490 1658769 -100214400 - MER65C LTR ERV1 -189 272 1 679 276 50 40 chr13 1658769 1658837 -100214332 + Charlie1a DNA MER1_type 92 158 -2603 1987 131 7 3 chr13 1658837 1659142 -100214027 + AluSx SINE Alu 1 306 -6 679 276 50 40 chr13 1659142 1659276 -100213893 + Charlie1a DNA MER1_type 158 300 -1155 2146 97 0 13 chr13 1659277 1659575 -100213594 + AluSc SINE Alu 1 294 -15 2119 99 3 3 chr13 1659575 1659867 -100213302 + AluSp SINE Alu 1 292 -21 201 195 0 0 chr13 1659938 1659979 -100213190 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 1870 170 19 43 chr13 1659979 1660041 -100213128 + Charlie1a DNA MER1_type 351 413 -2348 1952 103 55 0 chr13 1660041 1660333 -100212836 + AluSx SINE Alu 1 308 -4 1870 170 19 43 chr13 1660333 1660641 -100212528 + Charlie1a DNA MER1_type 413 712 -743 809 158 0 0 chr13 1660641 1660768 -100212401 + FLAM_C SINE Alu 1 127 -16 1185 156 15 65 chr13 1660874 1660955 -100212214 - L1M3 LINE L1 -455 5728 5645 2341 129 36 80 chr13 1660955 1661403 -100211766 + MSTC LTR MaLR 1 428 0 1185 156 15 65 chr13 1661403 1661584 -100211585 - L1M3 LINE L1 -538 5645 5479 1864 119 51 0 chr13 1661622 1661916 -100211253 - AluSq SINE Alu -4 309 1 1929 147 0 69 chr13 1661946 1662083 -100211086 + MER47A DNA MER2_type 32 177 -2146 1962 128 17 3 chr13 1662083 1662379 -100210790 + AluSq SINE Alu 1 300 -13 1929 147 0 69 chr13 1662379 1662601 -100210568 + MER47A DNA MER2_type 177 366 0 324 146 0 0 chr13 1662625 1662673 -100210496 - L1M3 LINE L1 -704 5467 5420 * 356 243 38 84 chr13 1662668 1662787 -100210382 - L1M4c LINE L1 -4226 2158 2035 428 192 211 19 chr13 1662787 1662891 -100210278 + FLAM_A SINE Alu 1 124 -9 356 243 38 84 chr13 1662891 1662948 -100210221 - L1M4c LINE L1 -4349 2035 1977 2004 115 0 7 chr13 1662948 1663267 -100209902 - AluSx SINE Alu 0 319 3 356 243 38 84 chr13 1663267 1663400 -100209769 - L1M4c LINE L1 -4407 1977 1768 318 83 0 21 chr13 1663496 1663544 -100209625 - Alu SINE Alu -222 78 32 1613 186 25 74 chr13 1863671 1863837 -100009332 + MLT1A2 LTR MaLR 1 173 -201 2090 129 10 3 chr13 1863837 1864132 -100009037 + AluSx SINE Alu 1 297 -15 1613 186 25 74 chr13 1864132 1864329 -100008840 + MLT1A2 LTR MaLR 173 346 -28 278 25 0 25 chr13 1864329 1864369 -100008800 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1613 186 25 74 chr13 1864369 1864397 -100008772 + MLT1A2 LTR MaLR 346 374 0 1860 151 6 28 chr13 1864403 1864722 -100008447 - AluJo SINE Alu 0 312 1 332 329 70 35 chr13 1864730 1864958 -100008211 - L1M4 LINE L1 -3568 2578 2343 939 288 22 38 chr13 1865011 1865327 -100007842 - LTR16A LTR ERVL -32 418 108 22 0 0 0 chr13 1865487 1865509 -100007660 + AT_rich Low_complexity Low_complexity 1 22 0 2153 115 3 0 chr13 1865641 1865929 -100007240 - AluSg SINE Alu -21 289 1 2310 115 0 0 chr13 1866226 1866538 -100006631 - AluSx SINE Alu 0 312 1 2001 137 3 10 chr13 1866602 1866908 -100006261 - AluSx SINE Alu -8 304 1 946 164 55 6 chr13 1866911 1867034 -100006135 - L1M3 LINE L1 -560 5611 5475 207 0 0 0 chr13 1867034 1867057 -100006112 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 946 164 55 6 chr13 1867057 1867116 -100006053 - L1M3 LINE L1 -696 5475 5420 725 179 17 0 chr13 1867116 1867233 -100005936 - AluSg/x SINE Alu -9 303 185 2200 99 7 0 chr13 1867911 1868219 -100004950 + AluSq SINE Alu 1 310 0 33 66 0 0 chr13 1868535 1868596 -100004573 + AT_rich Low_complexity Low_complexity 1 61 0 1797 98 70 35 chr13 1868624 1868909 -100004260 - AluSg SINE Alu -15 295 1 803 100 0 50 chr13 1868928 1869048 -100004121 - AluSg/x SINE Alu -11 301 188 35 0 0 0 chr13 1869077 1869112 -100004057 + AT_rich Low_complexity Low_complexity 1 35 0 4839 36 0 23 chr13 1869112 1869687 -100003482 - L1PA4 LINE L1 -3 6152 5591 2043 106 39 7 chr13 1869696 1869979 -100003190 + AluSx SINE Alu 1 292 -20 1527 142 138 87 chr13 1870040 1870492 -100002677 + LTR54B LTR ERV1 1 479 -19 2512 76 0 0 chr13 1870492 1870795 -100002374 - AluSx SINE Alu -9 303 1 1527 142 138 87 chr13 1870795 1870814 -100002355 + LTR54B LTR ERV1 479 496 -2 24 53 0 0 chr13 1870837 1870875 -100002294 + AT_rich Low_complexity Low_complexity 1 38 0 489 273 8 8 chr13 1871241 1871373 -100001796 - MIR SINE MIR -15 247 116 254 326 31 8 chr13 1871391 1871520 -100001649 + L1MC4a LINE L1 5793 5924 -1884 1857 160 20 0 chr13 1872499 1872805 -100000364 + AluSx SINE Alu 1 312 0 935 286 54 27 chr13 1872819 1873189 -99999980 - MER93a LTR ERV1 -4 398 19 1446 185 15 59 chr13 1873192 1873516 -99999653 - AluJo SINE Alu -2 310 1 918 213 81 52 chr13 1873527 1873935 -99999234 + Charlie2 DNA MER1_type 2235 2654 -208 1439 171 0 28 chr13 1873938 1874190 -99998979 + AluJo SINE Alu 47 291 -21 876 249 95 21 chr13 1874208 1874411 -99998758 - Charlie2 DNA MER1_type -639 2223 1984 1802 211 32 51 chr13 1874411 1874884 -99998285 - MLT1C LTR MaLR -3 464 1 876 249 95 21 chr13 1874884 1875017 -99998152 - Charlie2 DNA MER1_type -878 1984 1862 498 264 218 0 chr13 1875029 1875245 -99997924 - Charlie2 DNA MER1_type -2540 322 60 278 258 89 16 chr13 1875851 1875975 -99997194 + L1MC4a LINE L1 5765 5897 -1911 2160 115 0 3 chr13 1876147 1876442 -99996727 - AluSx SINE Alu -18 294 1 221 188 29 29 chr13 1876458 1876527 -99996642 + A-rich Low_complexity Low_complexity 4 72 0 1918 140 0 0 chr13 1876743 1877014 -99996155 - AluSx SINE Alu -32 280 10 21 0 0 0 chr13 1877181 1877202 -99995967 + AT_rich Low_complexity Low_complexity 1 21 0 1705 93 0 25 chr13 1877215 1877451 -99995718 + AluSp SINE Alu 84 313 0 528 293 77 34 chr13 1877541 1877838 -99995331 + L2 LINE L2 2551 2860 -454 474 350 79 18 chr13 1877931 1878208 -99994961 + L2 LINE L2 3019 3312 -1 2336 55 0 61 chr13 1878487 1878831 -99994338 - AluY SINE Alu 0 311 1 2132 107 6 31 chr13 1878923 1879135 -99994034 - AluSq SINE Alu -4 309 106 234 0 0 0 chr13 1879135 1879161 -99994008 + (CTAGG)n Simple_repeat Simple_repeat 4 29 0 2132 107 6 31 chr13 1879161 1879265 -99993904 - AluSq SINE Alu -207 106 1 3405 150 14 12 chr13 1879511 1880085 -99993084 + L1MC1 LINE L1 5428 6002 -331 1247 158 27 18 chr13 1880111 1880333 -99992836 + L1MC1 LINE L1 6104 6327 -6 216 0 0 0 chr13 1880432 1880456 -99992713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1501 155 22 43 chr13 1880484 1880599 -99992570 + AluJb SINE Alu 26 142 -170 2176 114 6 19 chr13 1880599 1880915 -99992254 + AluSx SINE Alu 1 312 0 1501 155 22 43 chr13 1880915 1881076 -99992093 + AluJb SINE Alu 142 296 -16 2189 116 7 0 chr13 1881078 1881380 -99991789 + AluSg SINE Alu 1 304 -6 340 118 29 15 chr13 1881399 1881467 -99991702 + GA-rich Low_complexity Low_complexity 4 72 0 1033 168 0 53 chr13 1881467 1881657 -99991512 + AluJo SINE Alu 6 185 -127 37 0 0 0 chr13 1881657 1881694 -99991475 + AT_rich Low_complexity Low_complexity 1 37 0 2302 181 18 2 chr13 1881817 1882214 -99990955 + MER57A LTR ERV1 1 403 0 204 295 16 0 chr13 1882279 1882340 -99990829 - MIR3 SINE MIR -3 205 144 1290 110 53 57 chr13 1882377 1882605 -99990564 - MER30 DNA MER1_type 0 230 4 4597 151 49 21 chr13 1882668 1882879 -99990290 + L1MA8 LINE L1 5107 5311 -980 1826 148 0 40 chr13 1882879 1883183 -99989986 + AluSx SINE Alu 1 292 -20 4597 151 49 21 chr13 1883183 1883194 -99989975 + L1MA8 LINE L1 5311 5320 -971 4597 137 32 30 chr13 1883194 1884002 -99989167 + L1MA8 LINE L1 5480 6289 -2 4597 151 49 21 chr13 1884002 1884023 -99989146 + L1MA8 LINE L1 5320 6289 -2 247 263 102 68 chr13 1884234 1884317 -99988852 - MIR3 SINE MIR -30 178 88 1443 201 110 48 chr13 1884317 1884690 -99988479 + MSTD LTR MaLR 1 396 0 247 263 102 68 chr13 1884690 1884724 -99988445 - MIR3 SINE MIR -120 88 57 2508 75 0 3 chr13 1884874 1885179 -99987990 + AluSc SINE Alu 1 304 -5 531 201 56 153 chr13 1885278 1885566 -99987603 - MER112 DNA MER1_type 0 260 1 2408 52 42 0 chr13 1885598 1885887 -99987282 - AluY SINE Alu -10 301 1 209 204 20 20 chr13 1885961 1886010 -99987159 + MIR SINE MIR 4 52 -210 2036 144 3 3 chr13 1886285 1886583 -99986586 - AluSx SINE Alu -14 298 1 270 0 0 0 chr13 1886610 1886640 -99986529 + (TTA)n Simple_repeat Simple_repeat 2 31 0 513 278 37 53 chr13 1886743 1886988 -99986181 - MIR SINE MIR 0 262 22 1217 84 0 0 chr13 1887102 1887257 -99985912 - AluSg/x SINE Alu -21 289 135 184 260 20 0 chr13 1887269 1887319 -99985850 - MIR SINE MIR -110 152 102 2393 170 46 11 chr13 1887456 1887915 -99985254 - L1MB7 LINE L1 -16 6168 5694 21 82 0 0 chr13 1889775 1889824 -99983345 + GC_rich Low_complexity Low_complexity 1 49 0 209 221 47 35 chr13 1889932 1890018 -99983151 + G-rich Low_complexity Low_complexity 4 90 0 24 67 0 0 chr13 1890142 1890187 -99982982 + GC_rich Low_complexity Low_complexity 1 45 0 213 185 83 28 chr13 1890661 1890769 -99982400 + (CGGGG)n Simple_repeat Simple_repeat 1 114 0 * 223 167 61 0 chr13 1890714 1890780 -99982389 + (CGG)n Simple_repeat Simple_repeat 1 70 0 24 32 0 0 chr13 1890812 1890843 -99982326 + GC_rich Low_complexity Low_complexity 1 31 0 313 229 46 37 chr13 1892683 1892792 -99980377 - L1MC5 LINE L1 -30 7931 7822 21 36 0 0 chr13 1893989 1894017 -99979152 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr13 1894059 1894079 -99979090 + (TA)n Simple_repeat Simple_repeat 2 21 0 2309 117 3 0 chr13 1894079 1894386 -99978783 - AluSq SINE Alu -5 308 1 2017 89 22 61 chr13 1894387 1894700 -99978469 - AluSx SINE Alu -11 301 1 2060 133 10 0 chr13 1895659 1895959 -99977210 + AluSx SINE Alu 1 303 -9 812 160 0 0 chr13 1896002 1896127 -99977042 - FLAM_C SINE Alu -18 125 1 783 107 99 0 chr13 1896541 1896662 -99976507 + L1PA6 LINE L1 6022 6154 0 2238 110 3 19 chr13 1897331 1897641 -99975528 - AluSx SINE Alu -7 305 1 2118 107 4 0 chr13 1897679 1897996 -99975173 - AluSp SINE Alu 0 318 1 1914 119 49 0 chr13 1898017 1898303 -99974866 - AluSp SINE Alu -13 300 1 439 241 35 28 chr13 1899032 1899177 -99973992 + L1ME1 LINE L1 6017 6162 -4 269 290 142 41 chr13 1899194 1899363 -99973806 + MIR SINE MIR 64 249 -13 2062 105 0 60 chr13 1899810 1900124 -99973045 - AluSq SINE Alu -18 295 1 256 304 54 18 chr13 1900918 1901030 -99972139 + MIR SINE MIR 42 157 -105 198 0 0 0 chr13 1902163 1902185 -99970984 + (A)n Simple_repeat Simple_repeat 1 22 0 314 333 106 80 chr13 1902223 1902637 -99970532 - L2 LINE L2 -4 3268 2844 210 191 0 0 chr13 1902783 1902825 -99970344 + (TA)n Simple_repeat Simple_repeat 1 42 0 2223 124 3 0 chr13 1902825 1903132 -99970037 - AluSp SINE Alu -5 308 1 382 321 194 19 chr13 1903185 1903562 -99969607 - L2 LINE L2 -697 2617 2175 761 294 127 20 chr13 1904004 1904406 -99968763 - L1MC4a LINE L1 -1896 5912 5468 258 81 0 0 chr13 1904460 1904497 -99968672 + (TA)n Simple_repeat Simple_repeat 1 37 0 2408 90 0 0 chr13 1904498 1904799 -99968370 - AluSq SINE Alu -12 301 1 2350 104 0 13 chr13 1904951 1905267 -99967902 + AluSx SINE Alu 1 312 0 1429 134 36 13 chr13 1905305 1905529 -99967640 - MER30 DNA MER1_type 0 230 2 338 228 49 41 chr13 1905543 1905666 -99967503 + L1M4 LINE L1 4487 4610 -1536 447 288 134 22 chr13 1905831 1906041 -99967128 - L1MC4a LINE L1 -1904 5904 5644 2229 96 14 0 chr13 1906041 1906332 -99966837 - AluSg SINE Alu -15 295 1 447 288 134 22 chr13 1906332 1906441 -99966728 - L1MC4a LINE L1 -2164 5644 5549 2996 185 63 9 chr13 1906752 1907400 -99965769 - L1MB4 LINE L1 -14 6166 5484 405 0 0 0 chr13 1907424 1907469 -99965700 + (TATG)n Simple_repeat Simple_repeat 3 47 0 743 173 0 39 chr13 1907469 1907587 -99965582 - FLAM_C SINE Alu -187 115 1 2226 115 13 0 chr13 1907614 1907918 -99965251 + AluSc SINE Alu 1 308 -1 1838 187 66 0 chr13 1907970 1908333 -99964836 - L1MB2 LINE L1 -2 6169 5783 * 2423 214 109 71 chr13 1908326 1908747 -99964422 - L1M4 LINE L1 -3493 3151 2747 815 169 0 29 chr13 1908747 1908883 -99964286 - FLAM_C SINE Alu -1 132 1 2423 214 109 71 chr13 1908883 1909041 -99964128 - L1M4 LINE L1 -3897 2747 2596 2334 77 10 13 chr13 1909041 1909352 -99963817 - AluY SINE Alu -1 310 1 2423 214 109 71 chr13 1909352 1909443 -99963726 - L1M4 LINE L1 -4048 2596 2510 2225 98 0 3 chr13 1909443 1909739 -99963430 - AluY SINE Alu -16 295 1 2423 214 109 71 chr13 1909739 1909977 -99963192 - L1M4 LINE L1 -4134 2510 2282 2273 87 7 10 chr13 1909977 1910277 -99962892 - AluSp SINE Alu -14 299 1 2423 214 109 71 chr13 1910277 1910898 -99962271 - L1M4 LINE L1 -4362 2282 1566 291 236 59 98 chr13 1910901 1911104 -99962065 - L1M4 LINE L1 -5520 1022 828 328 344 43 66 chr13 1911245 1911550 -99961619 - L1M4 LINE L1 -6084 562 265 41 14 5 0 chr13 1911611 1911694 -99961475 + AT_rich Low_complexity Low_complexity 1 48 0 326 269 138 30 chr13 1911776 1912032 -99961137 - L1M4 LINE L1 -1173 4973 4657 2311 113 0 3 chr13 1912032 1912342 -99960827 + AluSx SINE Alu 1 309 -3 326 269 138 30 chr13 1912342 1912483 -99960686 - L1M4 LINE L1 -1489 4657 4533 1721 197 3 0 chr13 1912552 1912888 -99960281 + AluJo SINE Alu 1 337 0 1050 134 24 93 chr13 1912896 1913142 -99960027 - L1MC5 LINE L1 -1023 6938 6710 796 283 112 40 chr13 1913145 1913788 -99959381 - HAL1 LINE L1 -1400 1107 419 2019 112 0 0 chr13 1913844 1914113 -99959056 - AluSx SINE Alu -6 306 38 392 42 0 0 chr13 1914162 1914210 -99958959 + MADE1 DNA Mariner 1 48 -32 627 269 10 35 chr13 1914345 1914546 -99958623 - HAL1 LINE L1 -2272 235 40 377 392 25 32 chr13 1914563 1914710 -99958459 - L1M4 LINE L1 -1821 4325 4179 2233 111 0 3 chr13 1914710 1915008 -99958161 - AluSx SINE Alu -15 297 1 377 392 25 32 chr13 1915008 1915138 -99958031 - L1M4 LINE L1 -1967 4179 4050 1912 159 3 0 chr13 1915181 1915490 -99957679 - AluJb SINE Alu -2 310 1 1737 192 0 0 chr13 1916689 1916986 -99956183 - AluJb SINE Alu -15 297 1 1291 135 19 126 chr13 1917122 1917463 -99955706 + AluJo SINE Alu 1 307 0 1294 194 3 45 chr13 1917465 1917754 -99955415 + AluJo SINE Alu 1 277 -35 251 27 0 27 chr13 1917756 1917793 -99955376 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 458 171 128 8 chr13 1917825 1917942 -99955227 + FLAM_A SINE Alu 12 142 0 24 32 0 0 chr13 1918123 1918154 -99955015 + AT_rich Low_complexity Low_complexity 1 31 0 264 321 169 27 chr13 1918263 1918383 -99954786 - MIR SINE MIR 0 262 160 2372 84 0 28 chr13 1918383 1918703 -99954466 + AluSx SINE Alu 1 311 -1 264 321 169 27 chr13 1918703 1918766 -99954403 - MIR SINE MIR -102 160 53 2090 103 3 3 chr13 1918831 1919122 -99954047 - AluSg SINE Alu -17 293 3 382 116 0 23 chr13 1919134 1919220 -99953949 + (TG)n Simple_repeat Simple_repeat 2 85 0 1214 181 23 5 chr13 1919257 1919473 -99953696 - AluJb SINE Alu -92 220 1 213 264 14 56 chr13 1919973 1920045 -99953124 - L2 LINE L2 -6 3266 3198 2043 92 16 33 chr13 1920059 1920363 -99952806 + AluSc SINE Alu 1 299 -10 1735 86 117 52 chr13 1920815 1920861 -99952308 - L1MA2 LINE L1 -6 6298 6256 1804 141 0 0 chr13 1920861 1921123 -99952046 - AluSx SINE Alu -8 304 43 1735 86 117 52 chr13 1921123 1921400 -99951769 - L1MA2 LINE L1 -48 6256 5954 668 292 107 0 chr13 1921465 1921698 -99951471 + L2 LINE L2 2523 2780 -534 325 250 29 59 chr13 1921701 1921837 -99951332 + L2 LINE L2 3182 3313 0 476 333 52 26 chr13 1921861 1922092 -99951077 + L2 LINE L2 2823 3059 -254 422 120 13 0 chr13 1922610 1922685 -99950484 + (TG)n Simple_repeat Simple_repeat 1 76 0 1884 159 3 20 chr13 1922685 1922981 -99950188 - AluJo SINE Alu -21 291 1 250 241 38 38 chr13 1922987 1923066 -99950103 + L2 LINE L2 3186 3264 -8 204 272 49 25 chr13 1923091 1923172 -99949997 + MIR SINE MIR 47 129 -133 1756 144 4 14 chr13 1923176 1923453 -99949716 - AluJb SINE Alu 0 312 39 822 202 31 40 chr13 1923455 1923678 -99949491 - MLT1D LTR MaLR -283 222 2 1420 154 75 26 chr13 1923832 1923959 -99949210 + AluJb SINE Alu 1 120 -192 189 0 0 0 chr13 1923959 1923980 -99949189 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1420 154 75 26 chr13 1923980 1924119 -99949050 + AluJb SINE Alu 120 280 -32 885 104 0 22 chr13 1925760 1925894 -99947275 + FLAM_C SINE Alu 1 131 -2 2056 107 21 17 chr13 1926060 1926350 -99946819 - AluSx SINE Alu -21 291 1 25 23 0 23 chr13 1926381 1926406 -99946763 + AT_rich Low_complexity Low_complexity 1 26 -16 1570 190 0 40 chr13 1926406 1926706 -99946463 - AluJo SINE Alu -24 288 1 25 23 0 23 chr13 1926706 1926723 -99946446 + AT_rich Low_complexity Low_complexity 26 42 0 284 233 27 0 chr13 1926786 1926859 -99946310 - L1MA10 LINE L1 0 6334 6260 31 0 0 0 chr13 1926913 1926944 -99946225 + AT_rich Low_complexity Low_complexity 1 31 0 1523 153 120 7 chr13 1926966 1927240 -99945929 - AluSg1 SINE Alu -4 305 1 1078 178 28 37 chr13 1927352 1927566 -99945603 + AluJb SINE Alu 85 296 -16 1640 180 0 48 chr13 1927861 1928006 -99945163 + AluJo SINE Alu 2 126 -186 2014 116 34 0 chr13 1928006 1928298 -99944871 + AluSx SINE Alu 1 302 -10 1640 180 0 48 chr13 1928298 1928463 -99944706 + AluJo SINE Alu 126 297 -15 437 239 0 18 chr13 1928487 1928600 -99944569 + FAM SINE Alu 41 151 -34 407 197 0 0 chr13 1928857 1928933 -99944236 - L1ME LINE L1 -437 5684 5609 210 118 0 0 chr13 1929068 1929102 -99944067 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 256 47 12 chr13 1929104 1929190 -99943979 - L1ME LINE L1 -507 5614 5526 13410 126 85 16 chr13 1930754 1931372 -99941797 + Tigger1 DNA MER2_type 1 575 -1843 1628 174 24 17 chr13 1931372 1931659 -99941510 - AluJb SINE Alu -23 289 1 13410 126 85 16 chr13 1931659 1932671 -99940498 + Tigger1 DNA MER2_type 575 1834 -584 2019 152 7 0 chr13 1932671 1932974 -99940195 + AluSx SINE Alu 1 305 -7 13410 126 85 16 chr13 1932974 1933603 -99939566 + Tigger1 DNA MER2_type 1834 2418 0 358 254 182 22 chr13 1933856 1934037 -99939132 - MIR SINE MIR -2 260 51 648 155 105 33 chr13 1934058 1934239 -99938930 - L1MA8 LINE L1 -3 6288 6095 2054 128 0 49 chr13 1935183 1935510 -99937659 - AluSx SINE Alu -1 311 1 2274 68 0 4 chr13 1935809 1936115 -99937054 - AluY SINE Alu 0 306 2 1748 179 3 10 chr13 1937509 1937810 -99935359 + AluJo SINE Alu 1 299 -13 282 164 295 0 chr13 1938290 1938351 -99934818 - Tigger5 DNA MER2_type -2244 79 1 242 224 0 0 chr13 1938388 1938437 -99934732 - Tigger5 DNA MER2_type -17 2306 2258 * 405 188 52 31 chr13 1938418 1938514 -99934655 + Tigger5 DNA MER2_type 2226 2323 0 2310 86 0 3 chr13 1938704 1938995 -99934174 - AluSq SINE Alu -20 293 4 247 211 28 28 chr13 1939023 1939094 -99934075 - L1 LINE L1 -3324 2822 2752 382 266 62 76 chr13 1939134 1939182 -99933987 - L1 LINE L1 -2227 3919 3872 2128 127 3 0 chr13 1939182 1939482 -99933687 - AluSx SINE Alu -11 301 1 382 266 62 76 chr13 1939482 1939509 -99933660 - L1 LINE L1 -2274 3872 3846 914 204 90 75 chr13 1939509 1939693 -99933476 + MER44D DNA MER2_type 2 182 -2309 2002 145 0 3 chr13 1939693 1939989 -99933180 - AluSx SINE Alu -14 298 4 914 204 90 75 chr13 1939989 1940137 -99933032 + MER44D DNA MER2_type 182 609 0 382 266 62 76 chr13 1940137 1940350 -99932819 - L1 LINE L1 -2300 3846 3634 380 275 159 48 chr13 1940356 1940665 -99932504 + L1 LINE L1 2995 3337 -2809 244 290 50 0 chr13 1940841 1940941 -99932228 + L1 LINE L1 3515 3619 -2527 7987 217 67 46 chr13 1940964 1941745 -99931424 - L1MB4 LINE L1 -6 6410 5647 1770 151 6 25 chr13 1941745 1942063 -99931106 - AluSx SINE Alu 0 312 1 7987 217 67 46 chr13 1942063 1942166 -99931003 - L1MB4 LINE L1 -769 5647 5548 2172 118 0 0 chr13 1942166 1942500 -99930669 - AluSg SINE Alu 0 310 1 1391 159 23 0 chr13 1942503 1942767 -99930402 - L1MA5 LINE L1 0 6300 6031 7987 217 67 46 chr13 1942767 1942813 -99930356 - L1MB4 LINE L1 -869 5547 5503 1113 196 35 4 chr13 1942813 1943042 -99930127 - MER46A DNA MER2_type 0 236 1 7987 217 67 46 chr13 1943042 1943127 -99930042 - L1MB4 LINE L1 -913 5503 5421 2117 112 3 22 chr13 1943127 1943304 -99929865 - AluSx SINE Alu -3 309 139 2173 115 3 3 chr13 1943304 1943609 -99929560 - AluSx SINE Alu -5 307 3 2117 112 3 22 chr13 1943609 1943744 -99929425 - AluSx SINE Alu -173 139 3 1907 146 3 14 chr13 1943746 1944041 -99929128 - AluSx SINE Alu -20 292 1 7987 217 67 46 chr13 1944041 1945632 -99927537 - L1MB4 LINE L1 -995 5421 3864 2144 100 0 4 chr13 1945632 1945933 -99927236 - AluSc SINE Alu 0 300 1 7987 217 67 46 chr13 1945933 1946324 -99926845 - L1MB4 LINE L1 -2552 3864 3483 2090 128 17 0 chr13 1946324 1946620 -99926549 - AluSx SINE Alu -9 303 3 7987 217 67 46 chr13 1946620 1948607 -99924562 - L1MB4 LINE L1 -2933 3483 1169 617 270 144 46 chr13 1948623 1948908 -99924261 - L1MDa LINE L1 -5898 642 330 * 1225 226 82 45 chr13 1948904 1949750 -99923419 - L1MDa LINE L1 -4745 1795 749 307 206 211 10 chr13 1949771 1949970 -99923199 + Charlie7 DNA MER1_type 2373 2611 -1 2155 119 3 3 chr13 1950360 1950672 -99922497 + AluSq SINE Alu 2 313 0 191 257 0 0 chr13 1951439 1951474 -99921695 + L2 LINE L2 3259 3293 -20 448 208 52 78 chr13 1951621 1951775 -99921394 - L1MC4 LINE L1 -242 7800 7651 2156 82 41 3 chr13 1951793 1952085 -99921084 - AluSp SINE Alu -10 303 1 311 250 81 32 chr13 1952085 1952209 -99920960 - L1MEc LINE L1 -4956 1586 1457 207 143 0 41 chr13 1952210 1952259 -99920910 + (TATTG)n Simple_repeat Simple_repeat 5 51 0 1847 240 57 111 chr13 1952262 1952542 -99920627 - L1MEc LINE L1 -5202 1623 1329 2445 65 0 0 chr13 1952542 1952836 -99920333 - AluY SINE Alu -17 294 1 1847 240 57 111 chr13 1952836 1953753 -99919416 - L1MEc LINE L1 -5496 1329 491 1321 167 98 0 chr13 1953772 1954059 -99919110 - L1MC4 LINE L1 -422 7620 7306 1060 213 139 18 chr13 1954386 1954781 -99918388 - Charlie4a DNA MER1_type -4 504 62 2224 123 3 0 chr13 1955485 1955794 -99917375 - AluSg SINE Alu 0 310 1 434 139 0 13 chr13 1956963 1957042 -99916127 - FLAM_A SINE Alu -10 132 55 454 163 0 22 chr13 1957093 1957185 -99915984 - AluJ/FLAM SINE Alu -218 94 5 189 0 0 0 chr13 1957204 1957225 -99915944 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1497 129 133 0 chr13 1957233 1957481 -99915688 - MER7A DNA MER2_type -1 345 67 33 25 0 0 chr13 1957605 1957645 -99915524 + AT_rich Low_complexity Low_complexity 1 40 0 542 305 138 27 chr13 1959186 1959520 -99913649 + L3 LINE CR1 1163 1533 -44 1702 179 9 18 chr13 1960103 1960432 -99912737 + MER2 DNA MER2_type 1 326 -19 1480 207 36 25 chr13 1960633 1960991 -99912178 - MLT1A1 LTR MaLR -3 362 1 2035 138 10 0 chr13 1961363 1961654 -99911515 - AluSx SINE Alu -16 296 3 2262 108 0 16 chr13 1961782 1961960 -99911209 - AluSx SINE Alu -2 310 138 2548 57 0 0 chr13 1961960 1962259 -99910910 - AluY SINE Alu -12 299 1 2262 108 0 16 chr13 1962259 1962395 -99910774 - AluSx SINE Alu -174 138 1 28 71 0 0 chr13 1962674 1962730 -99910439 + AT_rich Low_complexity Low_complexity 1 56 0 2195 112 13 0 chr13 1963427 1963732 -99909437 - AluSx SINE Alu -3 309 1 2470 87 0 0 chr13 1964161 1964470 -99908699 - AluSx SINE Alu -3 309 1 21 36 0 0 chr13 1967427 1967455 -99905714 + AT_rich Low_complexity Low_complexity 1 28 0 2258 93 20 3 chr13 1968775 1969076 -99904093 - AluSx SINE Alu -6 306 1 365 97 81 0 chr13 1969309 1969371 -99903798 - L1PA13 LINE L1 -8 6806 6740 2715 108 35 0 chr13 1969418 1969824 -99903345 - L1PA13 LINE L1 -60 6754 6335 18824 188 39 17 chr13 1969824 1971035 -99902134 - L1PA13 LINE L1 -967 5830 4647 2241 96 0 10 chr13 1971035 1971337 -99901832 - AluY SINE Alu -12 299 1 18824 188 39 17 chr13 1971337 1974286 -99898883 - L1PA13 LINE L1 -2150 4647 1506 2025 157 0 0 chr13 1974286 1974585 -99898584 - AluSx SINE Alu -13 299 1 18824 188 39 17 chr13 1974585 1976125 -99897044 - L1PA13 LINE L1 -5291 1506 1 2417 88 0 0 chr13 1976329 1976634 -99896535 + AluSx SINE Alu 1 305 -7 25 51 0 0 chr13 1977372 1977411 -99895758 + AT_rich Low_complexity Low_complexity 1 39 0 1744 161 20 33 chr13 1977521 1977825 -99895344 + AluJo SINE Alu 1 300 -12 1612 203 0 23 chr13 1977828 1978129 -99895040 + AluJo SINE Alu 3 296 -16 243 0 0 0 chr13 1978145 1978172 -99894997 + (TG)n Simple_repeat Simple_repeat 2 28 0 333 250 71 0 chr13 1978172 1978256 -99894913 + L1MC4 LINE L1 6614 6703 -1339 320 298 21 0 chr13 1978188 1978282 -99894887 - L1MC4 LINE L1 -1339 6703 6608 * 31 58 0 0 chr13 1979851 1979903 -99893266 + AT_rich Low_complexity Low_complexity 1 52 0 210 304 43 0 chr13 1980236 1980305 -99892864 + L3 LINE CR1 1459 1530 -47 292 258 250 23 chr13 1981205 1981333 -99891836 + MIR SINE MIR 44 200 -62 24 32 0 0 chr13 1982464 1982495 -99890674 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr13 1983548 1983601 -99889568 + AT_rich Low_complexity Low_complexity 1 53 0 344 261 11 22 chr13 1984837 1984929 -99888240 - MER5B DNA MER1_type -1 177 87 2142 88 34 10 chr13 1984941 1985236 -99887933 + AluSq SINE Alu 1 302 -11 417 244 0 0 chr13 1985745 1985835 -99887334 + MIR SINE MIR 78 167 -95 552 321 74 4 chr13 1985884 1986127 -99887042 + MIR SINE MIR 2 261 -1 337 179 90 13 chr13 1986414 1986492 -99886677 - MIR SINE MIR -110 152 69 658 194 61 92 chr13 1986501 1986697 -99886472 - MER8 DNA MER2_type -1 238 49 2233 177 40 38 chr13 1986775 1987228 -99885941 - MER82 DNA MER2_type 0 653 200 294 314 65 54 chr13 1987806 1988083 -99885086 + Tigger2 DNA MER2_type 1411 1690 -1028 1827 155 34 0 chr13 1988658 1988832 -99884337 - AluSx SINE Alu -5 307 117 249 109 0 0 chr13 1988832 1988878 -99884291 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1827 155 34 0 chr13 1988878 1989000 -99884169 - AluSx SINE Alu -195 117 1 653 218 56 0 chr13 1989284 1989426 -99883743 - MER82 DNA MER2_type -492 161 12 342 113 25 125 chr13 1991190 1991270 -99881899 + Tigger2 DNA MER2_type 1 72 -2646 253 222 111 0 chr13 1991273 1991327 -99881842 - MER2 DNA MER2_type -4 341 282 * 473 172 192 86 chr13 1991306 1991336 -99881833 - MER8 DNA MER2_type -64 175 150 1823 160 7 0 chr13 1991336 1991617 -99881552 + AluJb SINE Alu 21 303 -9 473 172 192 86 chr13 1991617 1991737 -99881432 - MER8 DNA MER2_type -89 150 9 2289 100 3 0 chr13 1991959 1992259 -99880910 + AluSq SINE Alu 1 301 -12 183 42 0 0 chr13 1993144 1993168 -99880001 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1826 153 22 0 chr13 1993170 1993445 -99879724 - AluSx SINE Alu -31 281 1 368 191 112 79 chr13 1993713 1993865 -99879304 - MER112 DNA MER1_type -6 254 98 1894 109 0 0 chr13 1994741 1994989 -99878180 + AluJb SINE Alu 59 306 -6 2242 95 11 0 chr13 1995063 1995347 -99877822 + AluSq SINE Alu 3 289 -24 426 92 63 29 chr13 1995347 1995521 -99877648 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 71 0 0 chr13 1996219 1996261 -99876908 + AT_rich Low_complexity Low_complexity 1 42 0 207 281 16 16 chr13 1996261 1996382 -99876787 + (TTA)n Simple_repeat Simple_repeat 2 122 0 1136 191 12 16 chr13 1996821 1997077 -99876092 + L1M4 LINE L1 4947 5201 -945 1318 122 141 53 chr13 1997079 1997342 -99875827 + AluJo SINE Alu 1 286 -26 286 83 0 0 chr13 1997358 1997394 -99875775 + U1 snRNA snRNA 1 36 -129 * 316 166 0 11 chr13 1997375 1997447 -99875722 + Alu SINE Alu 248 300 -2 586 190 17 17 chr13 1997803 1997919 -99875250 - Tigger2 DNA MER2_type 0 2718 2603 * 1939 113 88 105 chr13 1997914 1998322 -99874847 - Tigger2 DNA MER2_type -39 2679 1 24 53 0 0 chr13 1998762 1998800 -99874369 + AT_rich Low_complexity Low_complexity 1 38 0 518 264 64 90 chr13 1999848 2000159 -99873010 + MER46C DNA MER2_type 34 336 -2 1232 228 60 116 chr13 2000658 2001346 -99871823 - L1MDa LINE L1 -1814 4401 3753 2198 89 10 3 chr13 2002079 2002372 -99870797 - AluSc SINE Alu -14 295 1 941 94 106 12 chr13 2002662 2002822 -99870347 - AluSg/x SINE Alu -21 291 117 3222 125 60 2 chr13 2002838 2003393 -99869776 - MER51C LTR ERV1 0 640 1 889 212 38 128 chr13 2003747 2003801 -99869368 - L1MDa LINE L1 -2467 3748 3691 2214 113 0 3 chr13 2003801 2004102 -99869067 + AluSq SINE Alu 1 300 -13 889 212 38 128 chr13 2004102 2004438 -99868731 - L1MDa LINE L1 -2524 3691 3393 2112 141 3 6 chr13 2004458 2004771 -99868398 - AluSx SINE Alu 0 312 1 517 178 10 10 chr13 2004798 2004899 -99868270 - MER58 DNA MER1_type 0 2420 2320 470 202 148 5 chr13 2005041 2005244 -99867925 - L1MDa LINE L1 -2982 3233 3002 21 36 0 0 chr13 2005285 2005313 -99867856 + AT_rich Low_complexity Low_complexity 1 28 0 2136 137 3 8 chr13 2005403 2005760 -99867409 - L1MB3 LINE L1 -3 6180 5826 378 0 0 0 chr13 2005760 2005802 -99867367 + (TG)n Simple_repeat Simple_repeat 1 42 0 1613 181 0 17 chr13 2005813 2006100 -99867069 - AluJb SINE Alu -30 282 1 2518 51 0 0 chr13 2006107 2006401 -99866768 - AluY SINE Alu -17 294 1 319 164 30 0 chr13 2006463 2006530 -99866639 + L1MB2 LINE L1 6096 6164 -7 1724 122 17 51 chr13 2007234 2007530 -99865639 - AluSx SINE Alu -5 307 22 2186 50 90 7 chr13 2007727 2008006 -99865163 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 2008139 2008161 -99865008 + AT_rich Low_complexity Low_complexity 1 22 0 536 210 206 0 chr13 2008555 2008788 -99864381 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 2008891 2008914 -99864255 + AT_rich Low_complexity Low_complexity 1 23 0 2462 79 3 0 chr13 2008926 2009231 -99863938 + AluSc SINE Alu 1 306 -3 365 203 26 123 chr13 2010239 2010378 -99862791 - L1MDa LINE L1 -3828 2387 2264 1913 143 7 7 chr13 2010378 2010672 -99862497 - AluJb SINE Alu -14 298 5 365 203 26 123 chr13 2010672 2010708 -99862461 - L1MDa LINE L1 -3951 2264 2226 303 253 55 22 chr13 2010769 2010860 -99862309 - MER58 DNA MER1_type -2151 269 176 232 250 19 0 chr13 2010857 2010909 -99862260 - MER58 DNA MER1_type -158 57 5 * 956 215 105 12 chr13 2010920 2011245 -99861924 - L1MDa LINE L1 -4139 2257 1903 21 36 0 0 chr13 2012622 2012650 -99860519 + AT_rich Low_complexity Low_complexity 1 28 0 2325 90 3 10 chr13 2012937 2013247 -99859922 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 2013903 2014195 -99858974 - AluJo SINE Alu -20 292 4 713 226 53 11 chr13 2014236 2014426 -99858743 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 2014789 2015156 -99858013 - MER46B DNA MER2_type 0 236 1 428 204 76 52 chr13 2015335 2015507 -99857662 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 2016114 2016135 -99857034 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 2016380 2016417 -99856752 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 2016608 2016690 -99856479 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 2020503 2020632 -99852537 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 2020706 2020785 -99852384 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 2021106 2021220 -99851949 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 2021584 2021662 -99851507 + L2 LINE L2 3231 3309 -4 190 333 38 38 chr13 2021920 2022025 -99851144 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 2022517 2022664 -99850505 - MIR SINE MIR -88 174 6 7383 199 104 56 chr13 2022989 2023306 -99849863 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 2023306 2023378 -99849791 + Alu SINE Alu 1 72 -237 7383 199 104 56 chr13 2023378 2025298 -99847871 - Cheshire DNA MER1_type -300 2120 2 2147 120 0 0 chr13 2025346 2025646 -99847523 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 2025657 2025717 -99847452 + L2 LINE L2 1411 1472 -1842 320 282 137 0 chr13 2025717 2025834 -99847335 + L2 LINE L2 1646 1778 -1536 285 307 123 9 chr13 2027266 2027380 -99845789 + L2 LINE L2 3145 3271 -1 379 345 103 5 chr13 2028419 2028613 -99844556 + MIR SINE MIR 34 246 -16 201 74 0 0 chr13 2028684 2028711 -99844458 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 1531 219 41 24 chr13 2028860 2029253 -99843916 - MSTD LTR MaLR -2 394 3 366 23 0 0 chr13 2029786 2029829 -99843340 + (CA)n Simple_repeat Simple_repeat 2 44 0 28 0 0 0 chr13 2030063 2030091 -99843078 + AT_rich Low_complexity Low_complexity 1 28 0 867 112 0 14 chr13 2030716 2030859 -99842310 - L1MB3 LINE L1 -217 5966 5826 414 0 0 0 chr13 2030859 2030905 -99842264 + (TG)n Simple_repeat Simple_repeat 1 46 0 1611 181 0 17 chr13 2030920 2031207 -99841962 - AluJb SINE Alu -30 282 1 2514 51 0 0 chr13 2031214 2031508 -99841661 - AluY SINE Alu -17 294 1 312 164 30 0 chr13 2031570 2031637 -99841532 + L1MB2 LINE L1 6096 6164 -7 1944 110 22 54 chr13 2032344 2032661 -99840508 - AluSx SINE Alu 0 312 6 1654 114 30 11 chr13 2033496 2033760 -99839409 - AluSx SINE Alu -1 311 43 372 255 235 0 chr13 2033900 2034053 -99839116 - MIR SINE MIR -2 260 72 2182 54 90 7 chr13 2034510 2034789 -99838380 - AluY SINE Alu -9 302 1 22 0 0 0 chr13 2034922 2034944 -99838225 + AT_rich Low_complexity Low_complexity 1 22 0 478 210 206 0 chr13 2035338 2035571 -99837598 + MER33 DNA MER1_type 44 324 0 23 0 0 0 chr13 2035674 2035697 -99837472 + AT_rich Low_complexity Low_complexity 1 23 0 2488 79 3 0 chr13 2035709 2036014 -99837155 + AluSc SINE Alu 1 306 -3 335 246 43 29 chr13 2037023 2037161 -99836008 - L1MEc LINE L1 -3828 2387 2248 1925 143 7 7 chr13 2037162 2037456 -99835713 - AluJb SINE Alu -14 298 5 276 253 63 0 chr13 2037565 2037644 -99835525 - MER58 DNA MER1_type -2161 259 176 875 215 105 12 chr13 2037704 2038029 -99835140 - L1MEc LINE L1 -4139 2257 1903 21 36 0 0 chr13 2039407 2039435 -99833734 + AT_rich Low_complexity Low_complexity 1 28 0 2344 90 3 10 chr13 2039722 2040032 -99833137 - AluSp SINE Alu -5 308 1 1853 154 0 10 chr13 2040688 2040980 -99832189 - AluJo SINE Alu -20 292 4 641 216 58 16 chr13 2041021 2041211 -99831958 - MER58A DNA MER1_type 0 224 27 1518 142 63 79 chr13 2041574 2041941 -99831228 - MER46B DNA MER2_type 0 236 1 423 204 76 52 chr13 2042120 2042292 -99830877 + MER104 DNA MER2_type 2 177 -3 21 0 0 0 chr13 2042899 2042920 -99830249 + AT_rich Low_complexity Low_complexity 1 21 0 203 27 0 81 chr13 2043165 2043202 -99829967 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 312 207 73 0 chr13 2043393 2043475 -99829694 + L1MC4 LINE L1 1982 6983 -1339 592 178 124 0 chr13 2047287 2047416 -99825753 - MER46C DNA MER2_type -5 333 189 302 165 38 25 chr13 2047490 2047569 -99825600 - MER46C DNA MER2_type -257 81 2 229 272 211 26 chr13 2047890 2048004 -99825165 - L2 LINE L2 0 3272 3138 392 205 13 0 chr13 2048364 2048442 -99824727 + L2 LINE L2 3231 3309 -4 202 324 38 38 chr13 2048700 2048805 -99824364 - MER5A DNA MER1_type -28 161 57 364 224 197 48 chr13 2049297 2049444 -99823725 - MIR SINE MIR -88 174 6 7366 199 104 56 chr13 2049769 2050086 -99823083 - Cheshire DNA MER1_type 0 2420 2120 520 69 0 0 chr13 2050086 2050158 -99823011 + Alu SINE Alu 1 72 -238 7366 199 104 56 chr13 2050158 2052078 -99821091 - Cheshire DNA MER1_type -300 2120 2 2134 120 0 0 chr13 2052126 2052426 -99820743 - AluSx SINE Alu -12 300 1 269 183 33 0 chr13 2052437 2052497 -99820672 + L2 LINE L2 1411 1472 -1842 1310 271 127 28 chr13 2052497 2052742 -99820427 + L2 LINE L2 1646 1865 -1449 1817 137 48 17 chr13 2052742 2053035 -99820134 - AluJb SINE Alu -10 302 1 1310 271 127 28 chr13 2053035 2053324 -99819845 + L2 LINE L2 1865 2233 -1081 215 176 98 0 chr13 2053384 2053435 -99819734 - MIR SINE MIR -44 218 163 257 217 17 0 chr13 2053436 2053496 -99819673 - MER58A DNA MER1_type 0 224 164 2853 103 55 118 chr13 2053502 2053824 -99819345 - LTR12 LTR ERV1 -132 582 316 189 0 0 0 chr13 2053824 2053845 -99819324 + (TGGGGG)n Simple_repeat Simple_repeat 4 24 0 2853 103 55 118 chr13 2053845 2054143 -99819026 - LTR12 LTR ERV1 -398 316 1 603 166 50 22 chr13 2054150 2054289 -99818880 - MER58C DNA MER1_type -72 143 1 576 216 65 7 chr13 2054312 2054451 -99818718 - MIR SINE MIR -108 154 8 2351 256 152 42 chr13 2054504 2055896 -99817273 + HAL1 LINE L1 249 1794 -713 719 189 18 6 chr13 2055940 2056104 -99817065 + LTR41 LTR ERVL 5 170 -603 479 204 53 29 chr13 2056265 2056472 -99816697 + LTR41 LTR ERVL 566 795 0 296 252 60 66 chr13 2056472 2056790 -99816379 + HAL1 LINE L1 2135 2450 -57 572 111 0 11 chr13 2056806 2056896 -99816273 - Tigger7 DNA MER2_type -7 2484 2396 * 806 222 5 25 chr13 2056894 2057097 -99816072 - Tigger7 DNA MER2_type -466 267 69 2651 139 19 24 chr13 2057185 2057413 -99815756 + L1MB3 LINE L1 5710 5937 -246 2040 137 0 0 chr13 2057413 2057713 -99815456 + AluSx SINE Alu 1 300 -12 2651 139 19 24 chr13 2057713 2057950 -99815219 + L1MB3 LINE L1 5937 6173 -10 25 0 0 0 chr13 2058095 2058120 -99815049 + AT_rich Low_complexity Low_complexity 1 25 0 216 254 175 35 chr13 2058266 2058380 -99814789 - L2 LINE L2 -5 3267 3138 943 176 77 31 chr13 2058883 2059105 -99814064 - MSTD LTR MaLR 0 396 165 1863 142 4 0 chr13 2059933 2060200 -99812969 - AluSx SINE Alu -44 268 1 21 36 0 0 chr13 2060433 2060461 -99812708 + AT_rich Low_complexity Low_complexity 1 28 0 1651 138 28 28 chr13 2060574 2060857 -99812312 - AluJo SINE Alu -29 283 1 233 224 0 0 chr13 2062690 2062739 -99810430 - L3 LINE CR1 -1 1576 1528 565 285 18 35 chr13 2062748 2062817 -99810352 + MER58A DNA MER1_type 1 70 -2350 2317 101 0 0 chr13 2062817 2063114 -99810055 + AluSx SINE Alu 1 297 -15 565 285 18 35 chr13 2063114 2063272 -99809897 + MER58A DNA MER1_type 70 224 0 991 239 128 32 chr13 2064012 2064467 -99808702 + L1ME4a LINE L1 5510 6007 -114 835 279 69 47 chr13 2064556 2064786 -99808383 - L1MEd LINE L1 -4869 1250 1026 381 22 0 0 chr13 2064786 2064832 -99808337 + (TG)n Simple_repeat Simple_repeat 2 47 0 2197 123 0 3 chr13 2064840 2065141 -99808028 - AluSx SINE Alu -12 300 1 835 279 69 47 chr13 2065141 2065410 -99807759 - L1MEd LINE L1 -5099 1020 731 301 375 125 0 chr13 2065545 2065729 -99807440 - L1MEd LINE L1 -5453 666 460 967 256 60 78 chr13 2065899 2066415 -99806754 + L2 LINE L2 2419 2925 -389 2247 107 0 16 chr13 2066490 2066798 -99806371 - AluSg1 SINE Alu -6 303 1 1885 159 7 13 chr13 2066801 2067102 -99806067 - AluJo SINE Alu -7 305 7 1200 251 176 12 chr13 2067178 2067356 -99805813 + L1ME1 LINE L1 5516 5663 -503 973 266 131 38 chr13 2067356 2067829 -99805340 + MLT2B1 LTR ERVL 1 517 -3 1200 251 176 12 chr13 2067829 2068149 -99805020 + L1ME1 LINE L1 5663 6096 -70 234 191 0 0 chr13 2068167 2068214 -99804955 + A-rich Low_complexity Low_complexity 1 47 0 899 172 35 7 chr13 2068219 2068448 -99804721 + AluJb SINE Alu 1 302 -10 1770 147 25 3 chr13 2068449 2068769 -99804400 + AluJb SINE Alu 1 312 0 201 39 0 0 chr13 2068850 2068876 -99804293 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 225 337 69 20 chr13 2069020 2069121 -99804048 - MIR SINE MIR -55 153 48 216 0 0 0 chr13 2069133 2069157 -99804012 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2277 113 0 0 chr13 2069159 2069452 -99803717 - AluSq SINE Alu -20 293 1 252 333 11 0 chr13 2069598 2069685 -99803484 - MIR SINE MIR -117 145 58 254 319 80 35 chr13 2069723 2069836 -99803333 - MIR SINE MIR -55 207 90 236 245 0 0 chr13 2069944 2069993 -99803176 + GA-rich Low_complexity Low_complexity 2 50 0 743 152 49 98 chr13 2070352 2070556 -99802613 + MLT1D LTR MaLR 1 194 -311 446 262 0 0 chr13 2070578 2070681 -99802488 + MLT1D LTR MaLR 387 489 -16 329 220 200 0 chr13 2070965 2071065 -99802104 - MER69 DNA AcHobo -2 2524 2405 350 241 86 0 chr13 2071162 2071278 -99801891 - MER69 DNA AcHobo -2383 143 18 2222 116 0 28 chr13 2071374 2071694 -99801475 + AluSx SINE Alu 1 311 -1 304 190 0 35 chr13 2071701 2071759 -99801410 - L1MC4 LINE L1 -1339 6703 6648 2343 116 0 0 chr13 2072056 2072366 -99800803 - AluSx SINE Alu -2 310 1 1336 173 110 18 chr13 2072485 2072757 -99800412 + AluSg SINE Alu 12 308 -2 917 204 0 17 chr13 2073198 2073374 -99799795 - FRAM SINE Alu -11 165 1 24 53 0 0 chr13 2073487 2073525 -99799644 + AT_rich Low_complexity Low_complexity 1 38 0 1449 158 39 56 chr13 2073963 2074075 -99799094 + AluJb SINE Alu 15 127 -185 197 0 71 0 chr13 2074075 2074103 -99799066 + (TAAAA)n Simple_repeat Simple_repeat 5 34 0 1449 158 39 56 chr13 2074103 2074274 -99798895 + AluJb SINE Alu 127 293 -19 2130 89 0 71 chr13 2074477 2074802 -99798367 - AluSx SINE Alu -10 302 1 222 297 22 66 chr13 2075531 2075713 -99797456 + C-rich Low_complexity Low_complexity 1 174 0 773 165 41 47 chr13 2076093 2076242 -99796927 + AluJb SINE Alu 137 286 -26 387 0 0 0 chr13 2076242 2076285 -99796884 + (CA)n Simple_repeat Simple_repeat 2 44 0 773 165 41 47 chr13 2076285 2076305 -99796864 + AluJb SINE Alu 286 305 -7 434 264 110 28 chr13 2076472 2076654 -99796515 + L2 LINE L2 3117 3313 0 313 233 56 33 chr13 2076665 2076755 -99796414 + MIR SINE MIR 58 149 -113 1071 153 98 31 chr13 2076756 2077011 -99796158 + LTR54B LTR ERV1 1 272 -226 3323 82 68 78 chr13 2077012 2077522 -99795647 - MER51A LTR ERV1 -8 626 122 2420 88 0 0 chr13 2077522 2077829 -99795340 - AluSq SINE Alu -6 307 1 3323 82 68 78 chr13 2077829 2077950 -99795219 - MER51A LTR ERV1 -512 122 1 605 248 59 5 chr13 2077952 2078154 -99795015 + LTR54B LTR ERV1 281 493 -5 525 238 63 7 chr13 2078325 2078468 -99794701 - MER21B LTR ERV1 -615 248 98 507 221 9 38 chr13 2078443 2078602 -99794567 - MER21B LTR ERV1 -410 195 12 * 820 161 19 6 chr13 2078607 2078769 -99794400 - L1M3 LINE L1 -714 5466 5303 1115 70 0 0 chr13 2078775 2078904 -99794265 + AluSq/x SINE Alu 7 135 -178 2190 123 0 7 chr13 2078904 2079214 -99793955 + AluSc SINE Alu 1 308 -1 1466 206 79 21 chr13 2079246 2079556 -99793613 - L1 LINE L1 -833 5313 4987 2009 107 68 0 chr13 2079556 2079836 -99793333 - AluSx SINE Alu -13 299 1 1466 206 79 21 chr13 2079836 2079963 -99793206 - L1 LINE L1 -1159 4987 4869 258 217 67 0 chr13 2079963 2080023 -99793146 + L2 LINE L2 3238 3301 -12 196 337 63 21 chr13 2080053 2080148 -99793021 + MIR3 SINE MIR 110 208 0 2066 98 19 63 chr13 2080483 2080799 -99792370 - AluSx SINE Alu -10 302 1 539 278 60 56 chr13 2081112 2081346 -99791823 - L2 LINE L2 0 3313 3079 2323 112 3 3 chr13 2081369 2081681 -99791488 + AluSx SINE Alu 1 312 0 186 133 0 0 chr13 2081743 2081773 -99791396 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 249 220 0 0 chr13 2081773 2081823 -99791346 - L2 LINE L2 0 3313 3264 540 265 177 32 chr13 2082158 2082407 -99790762 + L3 LINE CR1 621 905 -672 183 217 43 0 chr13 2082478 2082524 -99790645 + L3 LINE CR1 902 949 -628 680 225 174 34 chr13 2082569 2082862 -99790307 + L1MC4a LINE L1 7062 7395 -413 2057 105 0 44 chr13 2082980 2083298 -99789871 - AluSx SINE Alu 0 305 1 293 222 16 0 chr13 2083298 2083361 -99789808 + MER5A DNA MER1_type 123 186 -3 1586 145 47 34 chr13 2083939 2084235 -99788934 - AluJo SINE Alu 0 312 13 21 57 0 0 chr13 2084837 2084872 -99788297 + GC_rich Low_complexity Low_complexity 1 35 0 510 264 25 12 chr13 2085219 2085382 -99787787 + MLT1D LTR MaLR 32 196 -309 312 337 10 10 chr13 2085800 2085898 -99787271 - L1ME1 LINE L1 -5 6161 6064 2435 49 0 3 chr13 2086026 2086340 -99786829 + AluSg SINE Alu 1 313 0 291 177 0 0 chr13 2086465 2086527 -99786642 + (CA)n Simple_repeat Simple_repeat 2 63 0 455 251 8 0 chr13 2086539 2086811 -99786358 + (CA)n Simple_repeat Simple_repeat 1 274 0 219 212 0 0 chr13 2086844 2086929 -99786240 + (CA)n Simple_repeat Simple_repeat 2 86 0 530 199 0 11 chr13 2086958 2086976 -99786193 + (CA)n Simple_repeat Simple_repeat 2 19 -161 2132 121 47 44 chr13 2086976 2087339 -99785830 - THE1B LTR MaLR 0 364 1 530 199 0 11 chr13 2087339 2087501 -99785668 + (CA)n Simple_repeat Simple_repeat 19 180 0 501 228 0 0 chr13 2087528 2087695 -99785474 + (CA)n Simple_repeat Simple_repeat 2 168 0 198 0 0 0 chr13 2088499 2088521 -99784648 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 195 260 65 26 chr13 2088522 2088599 -99784570 - L2 LINE L2 -14 3299 3220 1316 127 23 0 chr13 2088753 2088973 -99784196 - MER50 LTR ERV1 -503 231 7 28 48 0 0 chr13 2089380 2089422 -99783747 + AT_rich Low_complexity Low_complexity 1 42 0 2180 150 92 20 chr13 2089422 2089881 -99783288 - L1MB3 LINE L1 -2 6181 5690 390 207 117 18 chr13 2090089 2090200 -99782969 - MIR SINE MIR -111 151 30 2187 103 3 3 chr13 2090705 2091024 -99782145 - AluSc SINE Alu 0 309 1 2098 122 3 14 chr13 2091024 2091320 -99781849 - AluJb SINE Alu -19 293 1 21 0 0 0 chr13 2091323 2091344 -99781825 + AT_rich Low_complexity Low_complexity 1 21 0 2289 159 18 0 chr13 2091835 2092225 -99780944 - L1MB3 LINE L1 -3 6180 5784 1431 139 58 95 chr13 2092227 2092382 -99780787 - AluJo SINE Alu -17 295 136 2436 95 0 13 chr13 2092382 2092699 -99780470 - AluSq SINE Alu 0 313 1 2436 75 3 0 chr13 2092704 2092997 -99780172 - AluSq SINE Alu -19 294 1 1431 139 58 95 chr13 2092997 2093023 -99780146 - AluJo SINE Alu -180 132 107 189 0 0 0 chr13 2093023 2093044 -99780125 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1431 139 58 95 chr13 2093044 2093149 -99780020 - AluJo SINE Alu -205 107 13 257 285 179 66 chr13 2093257 2093408 -99779761 - MIR SINE MIR -12 250 83 1180 130 4 100 chr13 2093852 2094091 -99779078 - AluJo SINE Alu -17 295 80 442 147 54 116 chr13 2096701 2096830 -99776339 + MER105 DNA DNA 29 149 -55 225 260 0 0 chr13 2099603 2099653 -99773516 + CT-rich Low_complexity Low_complexity 4 53 0 449 207 82 67 chr13 2100353 2100561 -99772608 + MER113 DNA MER1_type? 7 217 -304 559 245 130 10 chr13 2100670 2100870 -99772299 + MER113 DNA MER1_type? 257 480 -41 2080 131 0 3 chr13 2101568 2101858 -99771311 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr13 2101858 2101883 -99771286 + AT_rich Low_complexity Low_complexity 1 25 0 253 203 31 16 chr13 2103399 2103463 -99769706 + L1ME4a LINE L1 5615 5679 -442 287 302 114 48 chr13 2103656 2104033 -99769136 + MLT1J LTR MaLR 110 511 0 411 235 176 20 chr13 2104075 2104330 -99768839 + L1ME4a LINE L1 5773 6067 -54 2026 153 3 7 chr13 2104920 2105228 -99767941 - AluJo SINE Alu -5 307 1 1665 188 31 0 chr13 2105886 2106174 -99766995 + AluJo SINE Alu 6 302 -10 211 256 0 0 chr13 2106495 2106538 -99766631 + L2 LINE L2 3271 3313 0 261 0 0 0 chr13 2107042 2107071 -99766098 + (TG)n Simple_repeat Simple_repeat 1 29 0 250 265 364 20 chr13 2108289 2108787 -99764382 - L2 LINE L2 -337 2977 2309 1974 143 17 0 chr13 2109062 2109349 -99763820 - AluSx SINE Alu -20 292 1 4091 54 0 0 chr13 2109966 2110464 -99762705 + L1PA5 LINE L1 5656 6153 -1 317 321 55 36 chr13 2110700 2110865 -99762304 - L1M4 LINE L1 -1410 4736 4569 470 267 158 39 chr13 2110980 2111340 -99761829 - L1M4 LINE L1 -1717 4429 4027 1853 166 0 27 chr13 2111528 2111823 -99761346 - AluJo SINE Alu -20 292 6 307 280 155 7 chr13 2112052 2112323 -99760846 - L1M4 LINE L1 -2639 3507 3197 243 0 0 0 chr13 2112970 2112997 -99760172 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 1636 148 32 46 chr13 2112997 2113281 -99759888 - AluSx SINE Alu -32 280 1 432 308 70 29 chr13 2114090 2114262 -99758907 - MIR3 SINE MIR 0 208 30 1424 162 4 29 chr13 2114568 2114809 -99758360 - AluJo SINE Alu -77 235 1 2088 89 26 26 chr13 2115299 2115612 -99757557 + AluSq SINE Alu 1 313 0 263 318 103 32 chr13 2115834 2115960 -99757209 - L2 LINE L2 -15 3257 3123 277 111 0 0 chr13 2116022 2116058 -99757111 + AluY SINE Alu 140 175 -126 794 31 0 0 chr13 2116058 2116156 -99757013 + AluSg/x SINE Alu 212 309 0 237 235 20 29 chr13 2117471 2117573 -99755596 + (CCCCG)n Simple_repeat Simple_repeat 5 105 0 47 33 0 0 chr13 2119270 2119331 -99753838 + AT_rich Low_complexity Low_complexity 1 61 0 2768 143 40 6 chr13 2119334 2119829 -99753340 + L1MB3 LINE L1 5671 6182 -1 183 222 0 0 chr13 2120312 2120348 -99752821 + L2 LINE L2 3271 3306 -7 2165 105 0 10 chr13 2120508 2120822 -99752347 + AluSx SINE Alu 1 311 -1 2316 88 0 19 chr13 2120936 2121254 -99751915 + AluSq SINE Alu 1 312 -1 1513 131 20 81 chr13 2121452 2121790 -99751379 + AluJb SINE Alu 4 323 0 1748 134 76 0 chr13 2122702 2122992 -99750177 + AluJb SINE Alu 1 312 0 283 314 6 45 chr13 2123265 2123421 -99749748 - MIR SINE MIR -44 218 69 1672 171 3 13 chr13 2123915 2124225 -99748944 + AluJo SINE Alu 5 311 -1 198 342 70 44 chr13 2124904 2125062 -99748107 + L2 LINE L2 319 480 -2834 276 283 58 96 chr13 2125278 2125518 -99747651 + L3 LINE CR1 1008 1238 -339 794 208 134 19 chr13 2125525 2125741 -99747428 - MIR SINE MIR -12 250 10 202 321 0 0 chr13 2125741 2125797 -99747372 + (TG)n Simple_repeat Simple_repeat 1 56 0 212 342 49 71 chr13 2125797 2126063 -99747106 + L3 LINE CR1 1274 1533 -44 1531 148 32 0 chr13 2126431 2126681 -99746488 - AluJb SINE Alu -54 258 1 1936 156 47 0 chr13 2126800 2127120 -99746049 + MER7A DNA MER2_type 14 346 0 440 251 106 58 chr13 2127365 2127572 -99745597 + MIR SINE MIR 46 262 0 377 279 62 37 chr13 2128702 2128863 -99744306 - MER104 DNA Tc2 -3 177 13 3101 208 18 15 chr13 2129216 2130163 -99743006 + L1M3 LINE L1 4629 5583 -600 310 239 33 43 chr13 2132425 2132543 -99740626 + MIR SINE MIR 70 187 -68 1654 162 13 33 chr13 2135028 2135330 -99737839 - AluJo SINE Alu -16 296 1 942 167 0 6 chr13 2137287 2137455 -99735714 - AluJb SINE Alu -17 295 129 2952 132 29 2 chr13 2137914 2138391 -99734778 - L1MB3 LINE L1 -19 6164 5675 945 302 143 8 chr13 2139593 2139957 -99733212 + L3 LINE CR1 436 848 -729 287 106 0 0 chr13 2139975 2140022 -99733147 + Alu SINE Alu 253 299 -1 2023 136 0 7 chr13 2140183 2140491 -99732678 - AluSx SINE Alu -6 306 1 356 276 138 45 chr13 2140504 2140772 -99732397 + L1ME4a LINE L1 5826 6118 -3 260 291 90 8 chr13 2141074 2141208 -99731961 + L3 LINE CR1 1177 1321 -256 229 250 171 0 chr13 2141560 2141636 -99731533 + L2 LINE L2 3184 3272 0 241 247 55 103 chr13 2141804 2141950 -99731219 + MIR SINE MIR 76 214 -48 227 241 175 36 chr13 2142278 2142415 -99730754 - MIR SINE MIR -15 247 92 1660 183 7 13 chr13 2142869 2143175 -99729994 - AluJb SINE Alu -8 304 1 1368 169 0 0 chr13 2143534 2143765 -99729404 + AluJb SINE Alu 1 231 -81 22 0 0 0 chr13 2149305 2149327 -99723842 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 2149467 2149490 -99723679 + GC_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr13 2149685 2149718 -99723451 + GC_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr13 2150423 2150444 -99722725 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr13 2152885 2152906 -99720263 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr13 2154134 2154161 -99719008 + (A)n Simple_repeat Simple_repeat 1 27 0 479 214 28 84 chr13 2154339 2154517 -99718652 - MER112 DNA MER1_type -92 168 1 1313 150 127 29 chr13 2155219 2155526 -99717643 - MER44D DNA MER2_type -2 607 1 612 247 66 29 chr13 2155902 2156145 -99717024 - L1MC4a LINE L1 -1850 5958 5707 232 229 52 0 chr13 2156153 2156249 -99716920 + L1MCc LINE L1 19 119 -6304 242 273 27 64 chr13 2156904 2157014 -99716155 + L1MCc LINE L1 1291 1396 -5027 * 3217 237 63 31 chr13 2157002 2157193 -99715976 + L1MCc LINE L1 3044 3227 -3714 1720 140 45 3 chr13 2157193 2157485 -99715684 + AluSx SINE Alu 1 304 -8 3217 237 63 31 chr13 2157485 2158244 -99714925 + L1MCc LINE L1 3227 4048 -2893 1884 193 11 26 chr13 2158244 2158622 -99714547 - MLT1A2 LTR MaLR -2 372 1 3217 237 63 31 chr13 2158622 2158963 -99714206 + L1MCc LINE L1 4048 4377 -2564 764 264 50 4 chr13 2158982 2159208 -99713961 - L1MC4a LINE L1 -2119 5689 5459 2043 87 45 7 chr13 2159702 2159990 -99713179 - AluSx SINE Alu -13 299 1 326 253 71 82 chr13 2160068 2160238 -99712931 + L1MEd LINE L1 3 170 -5949 21 0 0 0 chr13 2161276 2161297 -99711872 + AT_rich Low_complexity Low_complexity 1 21 0 1831 134 26 10 chr13 2161859 2162166 -99711003 + AluSx SINE Alu 1 312 0 216 0 0 0 chr13 2162270 2162294 -99710875 + (CA)n Simple_repeat Simple_repeat 2 25 0 386 295 77 0 chr13 2162721 2162877 -99710292 - L1MC/D LINE L1 -2053 5755 5588 219 266 94 0 chr13 2163169 2163233 -99709936 + MIR SINE MIR 76 145 -63 2993 37 0 3 chr13 2163773 2164127 -99709042 + L1PA3 LINE L1 5803 6155 0 480 275 38 25 chr13 2164570 2164730 -99708439 + MER5A DNA MER1_type 27 188 -1 2174 105 0 3 chr13 2164782 2165068 -99708101 + AluSq SINE Alu 1 285 -28 311 68 17 17 chr13 2165068 2165127 -99708042 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 296 170 0 19 chr13 2165145 2165167 -99708002 + AluSg/x SINE Alu 113 133 -167 2551 71 0 0 chr13 2165167 2165475 -99707694 + AluY SINE Alu 1 308 -3 1728 157 111 12 chr13 2165587 2165919 -99707250 + MLT1A1 LTR MaLR 1 365 0 192 231 125 38 chr13 2167146 2167306 -99705863 - L2 LINE L2 -209 3063 2890 6643 187 149 30 chr13 2167465 2167545 -99705624 + L1MDa LINE L1 276 345 -6195 2305 79 3 3 chr13 2167545 2167837 -99705332 + AluSc SINE Alu 1 292 -17 6643 187 149 30 chr13 2167837 2168446 -99704723 + L1MDa LINE L1 345 880 -5660 2136 125 0 13 chr13 2168446 2168757 -99704412 - AluSq SINE Alu -6 307 1 6643 187 149 30 chr13 2168757 2169440 -99703729 + L1MDa LINE L1 880 1480 -5060 1480 152 4 61 chr13 2169440 2169703 -99703466 + AluSx SINE Alu 1 248 -64 6643 187 149 30 chr13 2169703 2170020 -99703149 + L1MDa LINE L1 1480 2168 -4372 3214 179 23 77 chr13 2170255 2170469 -99702700 - MLT-int LTR MaLR -1001 734 510 2389 66 0 3 chr13 2170469 2170757 -99702412 - AluY SINE Alu -15 296 10 3214 179 23 77 chr13 2170757 2171313 -99701856 - MLT-int LTR MaLR -1225 510 5 1550 204 163 12 chr13 2171329 2171805 -99701364 - L1MC3 LINE L1 -373 7412 6856 189 0 0 0 chr13 2171805 2171826 -99701343 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 204 163 12 chr13 2171826 2171920 -99701249 - L1MC3 LINE L1 -929 6856 6778 284 290 14 69 chr13 2171953 2172098 -99701071 + L2 LINE L2 3136 3272 0 1415 182 62 3 chr13 2173721 2174045 -99699124 - MLT2D LTR ERVL -52 362 20 207 0 0 0 chr13 2174678 2174701 -99698468 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1885 231 2 23 chr13 2176620 2177091 -99696078 + L1M4 LINE L1 4867 5327 -819 22602 54 13 3 chr13 2177093 2179884 -99693285 + L1P LINE L1 4 2823 -3323 1898 148 7 10 chr13 2183145 2183455 -99689714 - AluJb SINE Alu -3 309 1 341 246 26 18 chr13 2183789 2183903 -99689266 - L1MEc LINE L1 -3108 3107 2993 57 28 0 0 chr13 2183908 2183979 -99689190 + AT_rich Low_complexity Low_complexity 1 71 0 2696 247 31 67 chr13 2183984 2184387 -99688782 - L1MEc LINE L1 -3216 2999 2583 1834 146 34 10 chr13 2184387 2184681 -99688488 - AluSx SINE Alu -3 309 9 2696 247 31 67 chr13 2184681 2185273 -99687896 - L1MEc LINE L1 -3632 2583 1971 785 122 257 0 chr13 2185273 2185393 -99687776 - MER5A DNA MER1_type -1 188 100 234 0 0 0 chr13 2185393 2185419 -99687750 + (CTG)n Simple_repeat Simple_repeat 1 26 0 785 122 257 0 chr13 2185419 2185446 -99687723 - MER5A DNA MER1_type -89 100 3 2696 247 31 67 chr13 2185446 2185475 -99687694 - L1MEc LINE L1 -4244 1971 1942 2204 121 0 9 chr13 2185475 2185790 -99687379 - AluSx SINE Alu 0 312 1 2696 247 31 67 chr13 2185790 2186156 -99687013 - L1MEc LINE L1 -4273 1942 1726 2302 97 0 0 chr13 2186156 2186444 -99686725 - AluSx SINE Alu -24 288 1 2696 247 31 67 chr13 2186444 2186591 -99686578 - L1MEc LINE L1 -4489 1726 1575 2360 161 50 10 chr13 2186983 2187387 -99685782 - MSTB LTR MaLR -4 422 3 289 317 49 0 chr13 2189012 2189135 -99684034 - MIR SINE MIR -74 188 60 1627 157 0 8 chr13 2189277 2189532 -99683637 + AluSx SINE Alu 1 253 -59 1290 138 0 0 chr13 2190072 2190261 -99682908 - AluSg/x SINE Alu -4 306 118 2131 125 0 0 chr13 2190271 2190559 -99682610 - AluSx SINE Alu -22 290 3 527 221 137 16 chr13 2191892 2192082 -99681087 - MLT1H1 LTR MaLR 0 555 343 233 267 67 44 chr13 2192417 2192507 -99680662 - MIR SINE MIR -90 118 27 374 293 0 45 chr13 2192531 2192664 -99680505 - MARNA DNA Mariner -227 359 233 1424 158 120 19 chr13 2193277 2193288 -99679881 - AluJo SINE Alu -9 293 285 194 0 39 0 chr13 2193288 2193314 -99679855 + (GA)n Simple_repeat Simple_repeat 1 27 0 1424 158 120 19 chr13 2193314 2193568 -99679601 - AluJo SINE Alu -17 285 1 182 36 0 36 chr13 2193624 2193652 -99679517 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 5681 147 30 13 chr13 2193878 2194669 -99678500 - L1MA4 LINE L1 -1 6299 5487 2498 60 3 0 chr13 2194669 2194968 -99678201 - AluY SINE Alu -11 300 1 5681 147 30 13 chr13 2194968 2195153 -99678016 - L1MA4 LINE L1 -813 5487 5307 330 320 10 0 chr13 2195297 2195394 -99677775 - L2 LINE L2 0 3272 3175 2389 97 3 0 chr13 2196140 2196451 -99676718 - AluSq SINE Alu -1 312 1 226 203 54 27 chr13 2196643 2196717 -99676452 - MIR SINE MIR -103 159 84 29 0 0 0 chr13 2196720 2196749 -99676420 + AT_rich Low_complexity Low_complexity 1 29 0 1032 104 8 0 chr13 2196749 2196883 -99676286 - AluJo SINE Alu -177 135 1 2377 99 3 0 chr13 2197249 2197561 -99675608 + AluSp SINE Alu 1 313 0 1047 262 52 56 chr13 2197630 2198134 -99675035 - HAL1 LINE L1 -4 2503 2002 414 276 99 17 chr13 2198300 2198481 -99674688 - HAL1 LINE L1 -702 1805 1610 261 321 114 15 chr13 2198479 2198610 -99674559 - HAL1 LINE L1 -2336 171 28 * 209 220 0 0 chr13 2198743 2198793 -99674376 - MIR SINE MIR -74 134 85 1164 169 14 119 chr13 2198925 2199203 -99673966 + MSTD LTR MaLR 148 396 0 2121 95 3 7 chr13 2199937 2200263 -99672906 + AluSx SINE Alu 6 312 0 2639 204 73 8 chr13 2201311 2202286 -99670883 + L1MD1 LINE L1 2078 3126 -3414 2158 201 31 53 chr13 2202308 2202854 -99670315 - MER74A LTR ERVL -24 534 1 1836 215 47 32 chr13 2202854 2206193 -99666976 + L1MD1 LINE L1 3126 6636 0 491 219 83 49 chr13 2206231 2206436 -99666733 + L1MC5 LINE L1 7655 7866 -95 317 266 65 32 chr13 2206479 2206603 -99666566 + MIR SINE MIR 2 129 -133 566 61 24 0 chr13 2206606 2206688 -99666481 + (TTTC)n Simple_repeat Simple_repeat 4 87 0 2390 94 3 0 chr13 2206699 2207007 -99666162 - AluSx SINE Alu -3 309 1 302 213 150 0 chr13 2207009 2207089 -99666080 + MIR SINE MIR 101 192 -70 1254 222 20 33 chr13 2207257 2207563 -99665606 - AluJo SINE Alu -10 302 1 1631 173 19 25 chr13 2207859 2208177 -99664992 - L1MA10 LINE L1 -593 5741 5426 2848 178 21 22 chr13 2208177 2208756 -99664413 + L1MA10 LINE L1 5755 6333 -1 2261 128 0 0 chr13 2208935 2209247 -99663922 + AluSx SINE Alu 1 312 0 2334 77 0 13 chr13 2211733 2212031 -99661138 + AluY SINE Alu 1 294 -17 2278 174 31 2 chr13 2213215 2213635 -99659534 - L1MB2 LINE L1 -150 6021 5590 2514 68 0 3 chr13 2216523 2216833 -99656336 - AluY SINE Alu -2 309 1 243 0 0 0 chr13 2217173 2217200 -99655969 + (A)n Simple_repeat Simple_repeat 1 27 0 1715 141 40 59 chr13 2217200 2217504 -99655665 - AluSx SINE Alu -14 298 1 21 0 0 0 chr13 2217844 2217865 -99655304 + GC_rich Low_complexity Low_complexity 1 21 0 1174 233 4 0 chr13 2219916 2220174 -99652995 + MER82 DNA MER2_type 54 312 -341 375 272 123 73 chr13 2220179 2220253 -99652916 + L1M4 LINE L1 4584 4653 -1493 1654 153 62 7 chr13 2220253 2220413 -99652756 + L1MA9 LINE L1 5987 6137 -175 387 0 0 0 chr13 2220413 2220456 -99652713 + (CA)n Simple_repeat Simple_repeat 2 44 0 1654 153 62 7 chr13 2220456 2220603 -99652566 + L1MA9 LINE L1 6137 6311 -1 375 272 123 73 chr13 2220603 2221082 -99652087 + L1M4 LINE L1 4653 5176 -970 2536 65 0 7 chr13 2221082 2221390 -99651779 + AluY SINE Alu 1 306 -5 375 272 123 73 chr13 2221390 2221475 -99651694 + L1M4 LINE L1 5176 5255 -891 1085 151 17 6 chr13 2221480 2221652 -99651517 + AluSg/x SINE Alu 137 310 -2 800 180 9 104 chr13 2221727 2221938 -99651231 - MLT1B LTR MaLR -197 193 3 1493 161 31 93 chr13 2221957 2222188 -99650981 - MLT1B-int LTR MaLR -17 1718 1511 2730 185 4 0 chr13 2222188 2222669 -99650500 + L1PB4 LINE L1 5669 6151 -5 1493 161 31 93 chr13 2222669 2222761 -99650408 - MLT1B-int LTR MaLR -224 1511 1415 2017 141 7 7 chr13 2222927 2223231 -99649938 + AluSx SINE Alu 1 304 -8 301 342 7 7 chr13 2223341 2223493 -99649676 + L1MC/D LINE L1 4925 5076 -1070 3847 156 62 40 chr13 2223511 2223789 -99649380 + L1PA16 LINE L1 4683 4953 -1213 3847 129 52 53 chr13 2223789 2224523 -99648646 + L1PA16 LINE L1 5431 6166 0 3847 156 62 40 chr13 2224523 2224858 -99648311 + L1PA16 LINE L1 4953 6166 0 1804 160 3 0 chr13 2225040 2225354 -99647815 - AluSx SINE Alu 0 315 1 23 0 0 0 chr13 2226645 2226668 -99646501 + AT_rich Low_complexity Low_complexity 1 23 0 2185 104 7 0 chr13 2226753 2227032 -99646137 + AluSq SINE Alu 1 281 -32 395 191 0 64 chr13 2227044 2227138 -99646031 - L1MC4 LINE L1 -1339 6703 6616 276 229 0 0 chr13 2227145 2227228 -99645941 + (TA)n Simple_repeat Simple_repeat 1 83 0 249 292 42 21 chr13 2227287 2227383 -99645786 + MER5B DNA MER1_type 1 98 -80 280 213 113 43 chr13 2227632 2227773 -99645396 + L1MC/D LINE L1 5317 5467 -2341 2689 118 14 21 chr13 2227798 2228232 -99644937 - L1PA13 LINE L1 0 6163 5733 356 131 16 0 chr13 2228232 2228293 -99644876 + MER52C LTR ERV1 1 62 -1216 6016 122 101 28 chr13 2228293 2229332 -99643837 + MER52C LTR ERV1 164 1278 0 4028 98 17 41 chr13 2229333 2229916 -99643253 + MER52C-int LTR ERV1 3 571 -6520 4154 166 28 4 chr13 2230016 2231278 -99641891 + MER52C-int LTR ERV1 1775 3204 -3887 3972 170 24 15 chr13 2231297 2231978 -99641191 + MER52C-int LTR ERV1 807 1493 -5598 697 139 70 0 chr13 2231998 2232113 -99641056 + MER52C-int LTR ERV1 1006 1128 -4818 2506 167 54 32 chr13 2232117 2232784 -99640385 + MER52C-int LTR ERV1 1416 1990 -3596 3182 148 75 8 chr13 2232829 2233331 -99639838 + MER52C-int LTR ERV1 692 1259 -6557 360 0 0 0 chr13 2233331 2233371 -99639798 + (TG)n Simple_repeat Simple_repeat 2 41 0 3182 148 75 8 chr13 2233371 2233491 -99639678 + MER52C-int LTR ERV1 1259 1369 -6447 260 128 0 0 chr13 2233469 2233516 -99639653 + MER52C-int LTR ERV1 1064 1110 -7010 * 2655 203 157 68 chr13 2233515 2234680 -99638489 + MER52C-int LTR ERV1 4480 5748 -1670 299 83 62 0 chr13 2234678 2234726 -99638443 + MER52C-int LTR ERV1 5976 6026 -1179 * 1408 91 10 20 chr13 2234728 2234926 -99638243 + MER52C-int LTR ERV1 6892 7087 -4 1398 146 64 6 chr13 2234926 2235195 -99637974 + MER52C LTR ERV1 23 390 -888 3740 110 9 13 chr13 2235198 2236181 -99636988 - L1P4 LINE L1 -427 5736 4761 584 298 58 4 chr13 2236226 2236468 -99636701 + L1ME4a LINE L1 5574 5828 -293 352 264 98 12 chr13 2236623 2236786 -99636383 - MIR SINE MIR 0 262 86 27 0 0 0 chr13 2236963 2236990 -99636179 + AT_rich Low_complexity Low_complexity 1 27 0 205 273 0 0 chr13 2237059 2237103 -99636066 + (TG)n Simple_repeat Simple_repeat 2 45 0 214 227 0 0 chr13 2237330 2237374 -99635795 + MIR3 SINE MIR 158 201 -7 3412 163 20 34 chr13 2237511 2238166 -99635003 - L1MB2 LINE L1 -3 6168 5523 2100 166 19 27 chr13 2238230 2238711 -99634458 + pTR5 LTR ERV1 738 1214 -1224 456 306 56 49 chr13 2239462 2239746 -99633423 - L1ME1 LINE L1 -2 6164 5879 263 178 0 40 chr13 2240085 2240186 -99632983 + (TA)n Simple_repeat Simple_repeat 1 97 0 1604 171 43 20 chr13 2241061 2241366 -99631803 - AluJo SINE Alu 0 312 1 539 219 31 20 chr13 2241797 2242015 -99631154 - L1MCc LINE L1 -4890 1533 1434 803 239 0 0 chr13 2242015 2242174 -99630995 - FRAM SINE Alu -3 163 5 539 219 31 20 chr13 2242174 2242203 -99630966 - L1MCc LINE L1 -4989 1434 1407 2020 261 104 59 chr13 2242213 2243326 -99629843 - L1MCc LINE L1 -5238 1185 23 259 235 289 51 chr13 2243333 2243648 -99629521 - HAL1 LINE L1 -1004 1503 1114 263 269 60 101 chr13 2243660 2243809 -99629360 - L1M4 LINE L1 -5692 850 708 304 302 55 33 chr13 2243908 2244090 -99629079 - L1M4 LINE L1 -6319 223 38 525 274 106 43 chr13 2244129 2244479 -99628690 - HAL1 LINE L1 -1398 1109 738 379 265 53 15 chr13 2244537 2244669 -99628500 - HAL1 LINE L1 -1966 541 405 373 256 48 24 chr13 2244886 2245011 -99628158 - HAL1 LINE L1 -2364 143 16 182 356 79 10 chr13 2246622 2246723 -99626446 + L2 LINE L2 3137 3244 -28 203 289 66 42 chr13 2247023 2247149 -99626020 - MIR SINE MIR -68 140 35 515 263 96 17 chr13 2247359 2247580 -99625589 - MIR SINE MIR -18 244 3 432 293 45 0 chr13 2248492 2248625 -99624544 - L2 LINE L2 0 3272 3134 2294 116 3 0 chr13 2248643 2248954 -99624215 + AluSx SINE Alu 1 312 0 1604 265 64 49 chr13 2249425 2250366 -99622803 + L1MC5 LINE L1 6096 7072 -889 2762 159 39 33 chr13 2250393 2250883 -99622286 - LTR42 LTR ERVL 0 495 3 898 229 112 46 chr13 2250898 2251334 -99621835 + L1MC5 LINE L1 7269 7733 -228 255 309 73 15 chr13 2251818 2252022 -99621147 + L1MEc LINE L1 898 1113 -6025 418 288 69 2 chr13 2252397 2252615 -99620554 + L1MEc LINE L1 1379 1680 -5323 307 361 0 0 chr13 2252665 2252798 -99620371 + LTR16B LTR ERVL 1 133 -331 3127 262 75 25 chr13 2252805 2254087 -99619082 + L1MEc LINE L1 2295 3511 -3446 1993 157 3 10 chr13 2254087 2254400 -99618769 - AluSx SINE Alu -1 311 1 3127 262 75 25 chr13 2254400 2255053 -99618116 + L1MEc LINE L1 3511 4422 -2535 2049 116 34 7 chr13 2255053 2255346 -99617823 + AluSx SINE Alu 1 301 -11 3127 262 75 25 chr13 2255346 2255522 -99617647 + L1MEc LINE L1 4422 4588 -2369 263 233 8 42 chr13 2255590 2255710 -99617459 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 25 0 0 0 chr13 2256061 2256086 -99617083 + AT_rich Low_complexity Low_complexity 1 25 0 434 286 7 7 chr13 2256773 2256920 -99616249 + LTR16B LTR ERVL 1 147 -317 417 266 89 13 chr13 2256950 2257108 -99616061 + LTR16B LTR ERVL 293 462 -2 230 272 93 107 chr13 2257461 2257902 -99615267 - L2 LINE L2 -666 2648 2214 891 128 8 8 chr13 2260469 2260594 -99612575 + AluSq/x SINE Alu 1 125 -188 201 147 0 0 chr13 2261453 2261487 -99611682 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 2023 129 7 0 chr13 2261492 2261770 -99611399 - AluSx SINE Alu -32 280 1 6324 156 36 13 chr13 2262054 2263109 -99610060 + ERVL-D LTR ERVL 3806 4884 -880 2968 154 31 19 chr13 2263109 2263649 -99609520 + ERVL-D LTR ERVL 5211 5757 -7 1403 204 143 30 chr13 2263649 2264021 -99609148 + MLT2D LTR ERVL 1 414 0 2434 82 0 3 chr13 2264115 2264420 -99608749 - AluY SINE Alu -7 304 1 484 234 113 63 chr13 2265677 2265916 -99607253 - MER112 DNA MER1_type -7 253 3 3040 171 49 4 chr13 2266241 2266772 -99606397 - MER41D LTR ERV1 -2 555 1 414 193 61 35 chr13 2267030 2267144 -99606025 + MER21B LTR ERV1 690 806 -57 1813 194 21 5 chr13 2267171 2267548 -99605621 + L1MB4 LINE L1 5792 6174 -6 344 200 0 0 chr13 2267603 2267668 -99605501 + L1MB8 LINE L1 6113 6177 -1 584 81 11 0 chr13 2268341 2268428 -99604741 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 1592 177 27 3 chr13 2268428 2268728 -99604441 - AluSx SINE Alu -5 307 1 2782 127 27 22 chr13 2268840 2269085 -99604084 + HUERS-P2 LTR ERV1 2187 2429 -659 1942 125 7 14 chr13 2269085 2269382 -99603787 + AluSq SINE Alu 1 295 -18 2782 127 27 22 chr13 2269382 2269955 -99603214 + HUERS-P2 LTR ERV1 2429 3061 -27 718 101 18 18 chr13 2269966 2270075 -99603094 - MER41D LTR ERV1 -448 109 1 3687 149 77 73 chr13 2270174 2270954 -99602215 + LTR1 LTR ERV1 3 785 0 227 355 47 0 chr13 2271937 2272044 -99601125 - L2 LINE L2 0 3272 3161 18320 93 2 3 chr13 2272377 2275841 -99597328 + L1PA8 LINE L1 2670 6165 -7 21 0 0 0 chr13 2276194 2276215 -99596954 + AT_rich Low_complexity Low_complexity 1 21 0 184 288 45 15 chr13 2277124 2277190 -99595979 - MIR SINE MIR -181 81 14 386 276 83 26 chr13 2277267 2277423 -99595746 - L3 LINE CR1 -289 1288 1124 289 372 17 23 chr13 2277521 2277691 -99595478 - L3 LINE CR1 -712 865 697 332 295 32 11 chr13 2277691 2277786 -99595383 + MIR SINE MIR 2 98 -164 1342 163 23 9 chr13 2278139 2278528 -99594641 - LTR32 LTR ERVL 0 471 15 278 342 136 50 chr13 2279162 2279545 -99593624 - L3 LINE CR1 -1134 443 28 280 177 62 73 chr13 2279593 2279689 -99593480 - L1ME4a LINE L1 -63 6058 5964 936 249 94 57 chr13 2279719 2279913 -99593256 - HAL1b LINE L1 0 1348 1163 2133 57 17 37 chr13 2279913 2280213 -99592956 + AluSg SINE Alu 1 294 -16 936 249 94 57 chr13 2280213 2280581 -99592588 - HAL1b LINE L1 -185 1163 765 651 217 82 124 chr13 2280736 2280879 -99592290 - HAL1b LINE L1 -883 465 318 1933 155 0 0 chr13 2280879 2281189 -99591980 - AluSx SINE Alu -2 310 1 651 217 82 124 chr13 2281189 2281400 -99591769 - HAL1b LINE L1 -1030 318 126 1657 142 31 52 chr13 2282508 2282832 -99590337 + L1MB3 LINE L1 5655 5971 -212 964 161 30 13 chr13 2282876 2283085 -99590084 + L1MB3 LINE L1 5928 6142 -41 2233 98 0 9 chr13 2283085 2283400 -99589769 + AluSx SINE Alu 1 312 0 234 111 333 22 chr13 2283500 2283590 -99589579 - MER5A DNA MER1_type -68 121 4 488 302 47 6 chr13 2284478 2284650 -99588519 - MER112 DNA MER1_type -7 253 75 213 263 158 0 chr13 2285252 2285347 -99587822 + MIR SINE MIR 71 180 -82 210 355 57 40 chr13 2285451 2285575 -99587594 - MIR SINE MIR -65 143 18 2637 13 0 13 chr13 2285730 2286037 -99587132 - AluYa5 SINE Alu -8 303 1 26 0 0 0 chr13 2286215 2286241 -99586928 + AT_rich Low_complexity Low_complexity 1 26 0 324 224 31 99 chr13 2286243 2286435 -99586734 - L1MC5 LINE L1 -209 7752 7574 280 241 19 0 chr13 2286519 2286573 -99586596 + L2 LINE L2 3218 3272 0 1019 185 0 24 chr13 2286615 2286820 -99586349 - AluJo SINE Alu -17 295 96 259 336 82 33 chr13 2286837 2286959 -99586210 + MIR3 SINE MIR 33 160 -48 219 336 49 57 chr13 2287370 2287535 -99585634 - MIR SINE MIR -43 165 12 745 203 0 0 chr13 2287960 2288093 -99585076 + AluJo/FLAM SINE Alu 1 133 -169 273 227 16 16 chr13 2288093 2288135 -99585034 + AluSc SINE Alu 132 148 -151 255 231 0 0 chr13 2288135 2288187 -99584982 + LTR30 LTR ERV1 1 52 -670 2144 132 31 146 chr13 2288187 2288727 -99584442 + LTR12 LTR ERV1 55 480 -234 781 114 16 16 chr13 2288728 2288851 -99584318 + AluSg/x SINE Alu 172 294 -18 196 315 146 23 chr13 2288966 2289096 -99584073 + MIR SINE MIR 111 256 -6 195 297 232 0 chr13 2289713 2289851 -99583318 + MIR3 SINE MIR 1 170 -38 427 86 0 0 chr13 2290115 2290173 -99582996 - MADE1 DNA Mariner -5 75 18 186 322 22 44 chr13 2291343 2291433 -99581736 + L2 LINE L2 3137 3224 -48 849 199 0 23 chr13 2292068 2292239 -99580930 + FRAM SINE Alu 8 174 -2 2187 106 0 3 chr13 2292493 2292796 -99580373 - AluSx SINE Alu -10 302 1 2302 63 0 13 chr13 2293205 2293506 -99579663 + AluY SINE Alu 1 297 -14 448 322 132 0 chr13 2293594 2293821 -99579348 - MIR SINE MIR 0 262 6 657 237 43 53 chr13 2294254 2294461 -99578708 - MER3 DNA MER1_type -2 207 3 2379 81 0 3 chr13 2294517 2294824 -99578345 + AluSg SINE Alu 1 306 -4 180 0 0 0 chr13 2295191 2295211 -99577958 + (TC)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr13 2295880 2295908 -99577261 + AT_rich Low_complexity Low_complexity 1 28 0 988 223 119 86 chr13 2296809 2297262 -99575907 + MLT1J LTR MaLR 25 492 -19 272 107 125 0 chr13 2297458 2297514 -99575655 - Alu SINE Alu 0 300 238 409 282 80 0 chr13 2298342 2298524 -99574645 + L1MEc LINE L1 1379 1535 -5324 316 361 0 0 chr13 2298574 2298707 -99574462 + LTR16B LTR ERVL 1 133 -331 1773 276 53 19 chr13 2298714 2299994 -99573175 + L1MEc LINE L1 2295 3638 -3319 1875 157 3 10 chr13 2299999 2300312 -99572857 - AluSx SINE Alu -1 311 1 23 0 0 0 chr13 2300396 2300419 -99572750 + AT_rich Low_complexity Low_complexity 1 23 0 356 335 6 6 chr13 2301121 2301294 -99571875 + (CA)n Simple_repeat Simple_repeat 1 173 0 2039 224 18 2 chr13 2302933 2303385 -99569784 + L1MB7 LINE L1 5726 6184 0 614 261 67 56 chr13 2304331 2304615 -99568554 + L2 LINE L2 1913 2199 -1115 841 274 77 24 chr13 2304893 2305339 -99567830 + L1MEc LINE L1 895 1389 -4921 2137 108 7 0 chr13 2305339 2305645 -99567524 + AluSq SINE Alu 1 308 -5 841 274 77 24 chr13 2305645 2305819 -99567350 + L1MEc LINE L1 1389 1552 -4758 991 269 65 63 chr13 2305822 2306250 -99566919 + L2 LINE L2 2282 2710 -604 799 279 217 9 chr13 2306351 2306834 -99566335 + L2 LINE L2 2687 3309 -4 197 224 15 104 chr13 2307361 2307428 -99565741 - L2 LINE L2 -9 3304 3244 286 358 83 8 chr13 2307434 2307554 -99565615 - MER5A DNA MER1_type 0 189 61 419 52 17 0 chr13 2307870 2307928 -99565241 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 1264 214 43 23 chr13 2307933 2308232 -99564937 - L1MC2 LINE L1 -56 6288 5984 1534 161 43 39 chr13 2308603 2308908 -99564261 + AluJo SINE Alu 1 306 -6 2528 199 42 7 chr13 2310528 2310878 -99562291 - L1MB7 LINE L1 0 6184 5807 2000 120 14 7 chr13 2310878 2311170 -99561999 - AluSx SINE Alu -14 298 5 2528 199 42 7 chr13 2311170 2311366 -99561803 - L1MB7 LINE L1 -377 5807 5619 2713 152 24 35 chr13 2311748 2312241 -99560928 + LTR45B LTR ERV1 2 489 0 274 221 191 0 chr13 2312446 2312514 -99560655 - L2 LINE L2 -26 3287 3207 350 250 68 57 chr13 2313464 2313567 -99559602 - MER5B DNA MER1_type 0 178 71 1945 138 6 6 chr13 2313567 2313878 -99559291 - AluY SINE Alu 0 311 1 350 250 68 57 chr13 2313878 2313950 -99559219 - MER5B DNA MER1_type -107 71 1 208 287 0 0 chr13 2314602 2314710 -99558459 + (GGGTG)n Simple_repeat Simple_repeat 4 111 0 387 0 0 0 chr13 2317001 2317044 -99556125 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 0 0 0 chr13 2317044 2317073 -99556096 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1467 150 0 5 chr13 2317099 2317312 -99555857 + AluSq SINE Alu 1 212 -101 442 50 0 17 chr13 2317312 2317372 -99555797 + AluSq/x SINE Alu 78 136 -177 2266 114 0 3 chr13 2317373 2317670 -99555499 + AluSx SINE Alu 3 298 -14 2303 116 10 0 chr13 2318406 2318716 -99554453 + AluSp SINE Alu 1 313 0 2167 111 19 32 chr13 2318766 2319082 -99554087 + AluSx SINE Alu 1 312 0 27 29 0 0 chr13 2319125 2319159 -99554010 + AT_rich Low_complexity Low_complexity 1 34 0 1861 171 42 46 chr13 2319179 2319611 -99553558 - MSTB1 LTR MaLR -2 430 1 207 0 0 0 chr13 2320136 2320159 -99553010 + (T)n Simple_repeat Simple_repeat 1 23 0 431 197 68 8 chr13 2320742 2320874 -99552295 + L1ME2 LINE L1 5182 5321 -825 483 183 0 0 chr13 2320884 2320966 -99552203 + FLAM_A SINE Alu 42 123 -19 688 210 81 5 chr13 2320999 2321185 -99551984 + L1ME2 LINE L1 5328 5527 -635 1190 195 4 22 chr13 2321185 2321411 -99551758 - AluJo SINE Alu -18 294 73 1451 225 58 41 chr13 2321416 2321883 -99551286 + L1ME2 LINE L1 5535 6009 -155 439 152 38 60 chr13 2322015 2322199 -99550970 + (CA)n Simple_repeat Simple_repeat 1 180 0 326 140 45 40 chr13 2322241 2322661 -99550508 + (CA)n Simple_repeat Simple_repeat 1 422 0 404 184 226 16 chr13 2322830 2323020 -99550149 + MLT1B LTR MaLR 28 257 -133 228 221 95 21 chr13 2323456 2323551 -99549618 - MIR SINE MIR -132 130 29 266 233 0 0 chr13 2324106 2324166 -99549003 + L2 LINE L2 2471 2530 -784 1035 216 39 49 chr13 2324278 2324584 -99548585 + MER58B DNA MER1_type 39 341 0 332 258 215 27 chr13 2324585 2324841 -99548328 + L2 LINE L2 2673 2976 -338 671 194 0 4 chr13 2325042 2325310 -99547859 + (TGG)n Simple_repeat Simple_repeat 1 266 0 301 282 155 7 chr13 2325657 2325799 -99547370 - L1ME4a LINE L1 -13 6108 5946 2311 72 17 10 chr13 2325916 2326206 -99546963 + AluY SINE Alu 1 292 -19 2261 113 23 10 chr13 2327157 2327466 -99545703 - AluSq SINE Alu 0 313 1 224 306 0 0 chr13 2327466 2327528 -99545641 - L2 LINE L2 -10 3303 3242 947 287 74 51 chr13 2328062 2328952 -99544217 + L2 LINE L2 2383 3309 -4 1146 251 43 15 chr13 2329405 2329731 -99543438 + L1MD3 LINE L1 7467 7801 -194 1203 168 13 35 chr13 2330439 2330671 -99542498 + AluJo SINE Alu 86 312 0 306 286 108 14 chr13 2331427 2331640 -99541529 + L1ME2 LINE L1 5576 5808 -313 189 238 24 0 chr13 2331642 2331684 -99541485 + L2 LINE L2 2348 2390 -924 474 272 209 10 chr13 2331694 2331900 -99541269 + MIR SINE MIR 2 248 -14 1674 177 112 58 chr13 2331900 2332329 -99540840 - LTR47A LTR ERVL 0 452 1 624 258 8 0 chr13 2332343 2332475 -99540694 - MER5B DNA MER1_type -11 167 35 327 319 89 41 chr13 2332478 2332914 -99540255 + L1ME LINE L1 141 597 -5608 1367 271 88 79 chr13 2333109 2333418 -99539751 + L1ME LINE L1 663 968 -5428 2337 88 0 0 chr13 2333418 2333702 -99539467 + AluSx SINE Alu 1 284 -28 1367 271 88 79 chr13 2333702 2334859 -99538310 + L1ME LINE L1 968 2147 -4249 2229 129 49 56 chr13 2334859 2335307 -99537862 + MER65A LTR ERV1 1 445 0 1367 271 88 79 chr13 2335307 2335438 -99537731 + L1ME LINE L1 2147 2275 -4121 470 317 76 15 chr13 2335436 2335764 -99537405 + L1ME LINE L1 37 384 -6012 * 1984 174 0 0 chr13 2335997 2336307 -99536862 + AluJb SINE Alu 1 310 -2 1944 264 26 22 chr13 2336314 2337035 -99536134 + L1ME LINE L1 3134 3857 -2358 942 193 5 0 chr13 2337044 2337231 -99535938 + L1ME LINE L1 3973 4160 -2055 540 214 13 120 chr13 2337213 2337530 -99535639 + L1ME2 LINE L1 5881 6163 -1 * 399 305 117 65 chr13 2337661 2338461 -99534708 + L2 LINE L2 2437 3271 -1 21 0 0 0 chr13 2339081 2339102 -99534067 + AT_rich Low_complexity Low_complexity 1 21 0 276 236 39 94 chr13 2339129 2339332 -99533837 + L1ME4a LINE L1 5929 6120 -1 265 319 90 21 chr13 2339804 2339948 -99533221 + MIR SINE MIR 92 245 -17 367 311 57 36 chr13 2340011 2340204 -99532965 - MIR SINE MIR -1 261 65 1287 228 70 48 chr13 2340211 2340668 -99532501 + MLT1C LTR MaLR 1 467 0 180 252 185 50 chr13 2341799 2341918 -99531251 + MIR SINE MIR 128 262 0 2373 107 0 0 chr13 2342095 2342395 -99530774 + AluSq SINE Alu 1 300 -13 201 175 0 0 chr13 2342867 2342907 -99530262 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 236 185 31 15 chr13 2343551 2343616 -99529553 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 693 167 9 0 chr13 2343778 2343886 -99529283 + FLAM_A SINE Alu 1 109 -33 22 0 0 0 chr13 2343888 2343910 -99529259 + AT_rich Low_complexity Low_complexity 1 22 0 2367 106 0 0 chr13 2346116 2346417 -99526752 + AluSg SINE Alu 1 301 -9 4405 168 35 9 chr13 2346501 2347371 -99525798 + L1 LINE L1 3734 4625 -1521 2180 130 0 3 chr13 2347808 2348108 -99525061 - AluSx SINE Alu -13 299 1 258 32 0 0 chr13 2348371 2348402 -99524767 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2245 92 7 0 chr13 2349152 2349434 -99523735 + AluY SINE Alu 1 284 -27 441 0 0 0 chr13 2349434 2349483 -99523686 + (CA)n Simple_repeat Simple_repeat 2 50 0 864 109 109 0 chr13 2350472 2350591 -99522578 + AluSp SINE Alu 1 132 -181 2206 107 7 0 chr13 2350595 2350896 -99522273 + AluSp SINE Alu 3 305 0 204 208 21 21 chr13 2352574 2352622 -99520547 + L2 LINE L2 3225 3272 0 2302 104 0 3 chr13 2354535 2354833 -99518336 + AluSx SINE Alu 1 297 -15 609 26 0 0 chr13 2358156 2358233 -99514936 - L1PA3 LINE L1 -1819 4327 4251 8840 26 1 1 chr13 2358233 2360106 -99513063 + L1PA3 LINE L1 4327 6167 0 760 272 86 0 chr13 2360239 2360471 -99512698 - MIR SINE MIR -3 259 8 280 272 114 88 chr13 2361549 2361821 -99511348 - L3 LINE CR1 -2 1575 1297 309 309 12 12 chr13 2361839 2361923 -99511246 - L3 LINE CR1 -427 1150 1067 239 252 71 31 chr13 2361962 2362089 -99511080 - L1ME4a LINE L1 -21 6100 5969 1525 158 104 6 chr13 2363051 2363379 -99509790 - MER46B DNA MER2_type 0 236 2 2173 102 3 3 chr13 2363440 2363755 -99509414 + AluSx SINE Alu 1 315 0 207 0 0 0 chr13 2363754 2363777 -99509392 + (CA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr13 2363803 2363825 -99509344 + (TG)n Simple_repeat Simple_repeat 1 22 0 303 307 260 0 chr13 2365358 2365550 -99507619 - L1ME4a LINE L1 -227 5943 5702 319 263 21 0 chr13 2365635 2365730 -99507439 - L1ME4a LINE L1 -630 5534 5438 1392 187 75 69 chr13 2367431 2367806 -99505363 - MLT2C1 LTR ERVL 0 397 21 1835 238 23 34 chr13 2368140 2368630 -99504539 + L1M4 LINE L1 3160 3643 -2503 1345 147 54 0 chr13 2368630 2368854 -99504315 + MER46A DNA MER2_type 1 236 0 1835 238 23 34 chr13 2368854 2368980 -99504189 + L1M4 LINE L1 3643 3769 -2377 276 211 18 0 chr13 2368982 2369039 -99504130 + L1M4 LINE L1 3796 3853 -2293 257 128 21 0 chr13 2372495 2372542 -99500627 + GA-rich Low_complexity Low_complexity 3 50 0 1259 166 0 0 chr13 2373190 2373389 -99499780 + AluJo SINE Alu 1 199 -113 226 241 46 35 chr13 2373548 2373635 -99499534 + LTR30 LTR ERV1 556 643 -79 380 108 140 32 chr13 2373636 2373729 -99499440 + LTR12 LTR ERV1 481 583 -131 923 191 43 22 chr13 2373913 2374143 -99499026 + L1MB3 LINE L1 5943 6177 -6 687 216 66 12 chr13 2375917 2376084 -99497085 + FRAM SINE Alu 1 176 0 2165 50 0 0 chr13 2376212 2376473 -99496696 - AluY SINE Alu -14 297 37 196 331 55 24 chr13 2377456 2377583 -99495586 + L2 LINE L2 2869 2999 -273 248 193 70 0 chr13 2377969 2378026 -99495143 + MER5A DNA MER1_type 88 148 -41 426 189 53 0 chr13 2378280 2378375 -99494794 + L1MB8 LINE L1 6078 6177 -1 240 35 0 0 chr13 2378417 2378446 -99494723 + (A)n Simple_repeat Simple_repeat 1 29 0 1472 232 53 48 chr13 2378759 2379282 -99493887 + MER39 LTR ERV1 1 707 0 672 242 21 16 chr13 2380091 2380277 -99492892 + MER5A DNA MER1_type 2 188 -1 277 235 37 25 chr13 2381581 2381662 -99491507 + L1MC5 LINE L1 7844 7925 -36 2459 44 0 7 chr13 2381869 2382166 -99491003 - AluY SINE Alu -16 295 1 583 275 109 22 chr13 2382196 2382472 -99490697 - L1M4 LINE L1 -920 5226 4927 954 179 0 36 chr13 2382656 2382852 -99490317 - AluJb SINE Alu -5 307 119 1802 286 110 30 chr13 2382921 2384105 -99489064 - L1M4 LINE L1 -1559 4587 3309 859 207 35 83 chr13 2384144 2384482 -99488687 - L1MC5 LINE L1 -726 7235 6914 1363 123 107 35 chr13 2384502 2384564 -99488605 - L1PA16 LINE L1 -9 6157 6101 2407 113 19 19 chr13 2384564 2384928 -99488241 + THE1B LTR MaLR 1 364 0 1363 123 107 35 chr13 2384928 2385126 -99488043 - L1PA16 LINE L1 -65 6101 5878 281 314 119 8 chr13 2385375 2385493 -99487676 - L2 LINE L2 -5 3267 3137 223 233 33 17 chr13 2386554 2386614 -99486555 + CT-rich Low_complexity Low_complexity 1 61 0 724 100 40 0 chr13 2386706 2386806 -99486363 - LTR12 LTR ERV1 0 714 611 295 177 70 32 chr13 2386811 2386892 -99486277 - LTR30 LTR ERV1 -75 624 479 1401 106 0 121 chr13 2386892 2387118 -99486051 - LTR12 LTR ERV1 -429 285 94 2268 68 10 0 chr13 2387118 2387411 -99485758 - AluY SINE Alu -15 296 1 1401 106 0 121 chr13 2387411 2387449 -99485720 - LTR12 LTR ERV1 -620 94 53 226 269 0 0 chr13 2387449 2387501 -99485668 - LTR30 LTR ERV1 -670 52 1 448 204 11 0 chr13 2387738 2387826 -99485343 + MER3 DNA MER1_type 1 89 -120 323 295 151 43 chr13 2387856 2388337 -99484832 - L2 LINE L2 -65 3248 2640 235 309 0 0 chr13 2389015 2389083 -99484086 + G-rich Low_complexity Low_complexity 2 69 0 1928 244 81 40 chr13 2389198 2390528 -99482641 - L1MCc LINE L1 -4740 2201 817 2002 122 0 0 chr13 2391547 2391826 -99481343 + AluSx SINE Alu 1 279 -33 200 59 29 0 chr13 2391830 2391864 -99481305 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 433 251 62 72 chr13 2392142 2392336 -99480833 - L1MEd LINE L1 -5191 928 734 2024 101 0 4 chr13 2392954 2393230 -99479939 + AluSx SINE Alu 14 288 -24 22 0 0 0 chr13 2393664 2393686 -99479483 + AT_rich Low_complexity Low_complexity 1 22 0 2143 124 3 0 chr13 2394266 2394572 -99478597 + AluSx SINE Alu 1 307 -5 512 135 0 0 chr13 2495683 2495757 -99377412 - AluS SINE Alu -238 74 1 683 291 51 22 chr13 2495848 2496425 -99376744 - L1MEc LINE L1 -3687 3254 2701 322 189 0 78 chr13 2496436 2496526 -99376643 - L1MEc LINE L1 -5194 1737 1655 251 279 64 17 chr13 2496528 2496700 -99376469 - L1MEc LINE L1 -4963 1460 1281 735 240 56 0 chr13 2496718 2496914 -99376255 - MER3 DNA MER1_type 0 209 3 350 292 125 14 chr13 2497524 2497691 -99375478 - MIR SINE MIR -63 145 11 928 187 155 5 chr13 2498817 2499004 -99374165 - MER58A DNA MER1_type -9 215 1 23 33 0 0 chr13 2499283 2499313 -99373856 + AT_rich Low_complexity Low_complexity 1 30 0 351 143 0 16 chr13 2499971 2500034 -99373135 - HsTC2 DNA Tc2 -13 1885 1824 278 216 40 27 chr13 2500034 2500108 -99373061 + L1ME2 LINE L1 6031 6105 -59 28 71 0 0 chr13 2500108 2500164 -99373005 + AT_rich Low_complexity Low_complexity 1 56 0 1992 156 0 0 chr13 2500676 2500964 -99372205 - AluSx SINE Alu -19 293 6 531 289 228 0 chr13 2501454 2501651 -99371518 - MIR SINE MIR 0 262 21 21 89 0 0 chr13 2501696 2501752 -99371417 + AT_rich Low_complexity Low_complexity 1 56 0 759 255 109 73 chr13 2501901 2501967 -99371202 - MLT1L LTR MaLR 0 615 553 2071 126 3 16 chr13 2501967 2502276 -99370893 + AluJo SINE Alu 1 305 -7 759 255 109 73 chr13 2502276 2502660 -99370509 - MLT1L LTR MaLR -62 553 149 1016 175 7 0 chr13 2503361 2503515 -99369654 + FAM SINE Alu 1 155 -30 2135 114 3 28 chr13 2503516 2503833 -99369336 - AluSx SINE Alu -3 309 1 1551 166 0 51 chr13 2504001 2504332 -99368837 + AluJo SINE Alu 1 316 0 793 141 0 59 chr13 2505566 2505701 -99367468 + AluJo/FLAM SINE Alu 1 127 -185 2399 61 0 7 chr13 2505704 2505997 -99367172 + AluY SINE Alu 1 291 -20 24 0 0 0 chr13 2505997 2506021 -99367148 + AT_rich Low_complexity Low_complexity 1 24 0 2904 194 51 27 chr13 2508945 2509443 -99363726 + L1MB8 LINE L1 5450 5972 -206 2199 114 0 0 chr13 2509443 2509740 -99363429 + AluSx SINE Alu 1 297 -15 2904 194 51 27 chr13 2509740 2509953 -99363216 + L1MB8 LINE L1 5972 6178 0 209 321 71 24 chr13 2510318 2510402 -99362767 + MIR3 SINE MIR 99 186 -22 1917 133 14 0 chr13 2510566 2510851 -99362318 - AluSx SINE Alu -10 302 14 2130 130 0 0 chr13 2510962 2511254 -99361915 + AluSg SINE Alu 1 292 -18 1265 90 12 0 chr13 2511597 2511763 -99361406 + AluSq SINE Alu 133 300 -13 579 199 209 71 chr13 2511777 2511973 -99361196 + MIR SINE MIR 5 227 -35 2024 137 0 10 chr13 2511973 2512272 -99360897 + AluJb SINE Alu 1 296 -16 480 224 19 19 chr13 2512272 2512379 -99360790 + AluJb SINE Alu 135 241 -71 1028 181 8 63 chr13 2512387 2512625 -99360544 + AluJo SINE Alu 85 309 -3 23 68 0 0 chr13 2512659 2512703 -99360466 + AT_rich Low_complexity Low_complexity 1 44 0 1742 184 0 3 chr13 2513031 2513333 -99359836 + AluJb SINE Alu 1 301 0 36 87 0 0 chr13 2513489 2513581 -99359588 + AT_rich Low_complexity Low_complexity 1 92 0 1929 226 34 36 chr13 2513997 2514467 -99358702 - MER21B LTR ERV1 -202 661 193 1134 222 89 81 chr13 2514470 2514953 -99358216 + L1MDa LINE L1 492 1074 -5466 2126 138 0 6 chr13 2514957 2515268 -99357901 + AluSx SINE Alu 2 310 -2 246 259 27 62 chr13 2515273 2515385 -99357784 + L1M4 LINE L1 3455 3562 -2584 1887 145 44 7 chr13 2517832 2518129 -99355040 + AluSg SINE Alu 1 308 -2 366 339 6 28 chr13 2518319 2518541 -99354628 + G-rich Low_complexity Low_complexity 1 216 0 1966 128 40 10 chr13 2519075 2519372 -99353797 - AluSx SINE Alu -6 306 1 1085 76 0 0 chr13 2519375 2519507 -99353662 - AluY SINE Alu -179 132 1 255 287 14 77 chr13 2519541 2519684 -99353485 - MER5A DNA MER1_type -21 168 35 507 225 47 16 chr13 2519714 2519843 -99353326 + MER5B DNA MER1_type 17 149 -29 197 324 14 14 chr13 2519925 2519996 -99353173 - MER5B DNA MER1_type -87 91 21 2155 93 0 4 chr13 2520137 2520415 -99352754 - AluY SINE Alu -6 305 29 1553 251 68 38 chr13 2520715 2521732 -99351437 - L1ME3A LINE L1 -213 5957 4724 1071 193 51 77 chr13 2521733 2521850 -99351319 + MLT1A1 LTR MaLR 1 120 -245 1581 88 5 5 chr13 2521850 2522065 -99351104 - AluSc SINE Alu -8 301 87 1071 193 51 77 chr13 2522065 2522344 -99350825 + MLT1A1 LTR MaLR 120 405 40 221 0 35 0 chr13 2522344 2522373 -99350796 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1846 153 0 4 chr13 2522373 2522654 -99350515 - AluSx SINE Alu -32 280 1 1071 193 51 77 chr13 2522654 2522693 -99350476 + MLT1A1 LTR MaLR 322 360 -5 384 243 56 0 chr13 2522696 2522803 -99350366 - L1ME3A LINE L1 -1417 4729 4617 279 0 0 0 chr13 2522814 2522845 -99350324 + (A)n Simple_repeat Simple_repeat 1 31 0 2147 186 34 5 chr13 2522873 2523319 -99349850 - L1MC1 LINE L1 -9 6258 5800 892 151 73 28 chr13 2523322 2523501 -99349668 - MER46A DNA MER2_type -4 232 46 4018 204 25 16 chr13 2523512 2524761 -99348408 - L1MC1 LINE L1 -562 5705 4440 2233 75 4 7 chr13 2524761 2525062 -99348107 - AluY SINE Alu 0 300 1 4018 204 25 16 chr13 2525062 2525293 -99347876 - L1MC1 LINE L1 -1827 4440 4213 403 254 167 4 chr13 2525281 2525509 -99347660 - L1MC1 LINE L1 -3275 2805 2541 * 935 154 77 16 chr13 2525515 2525697 -99347472 - MER21B LTR ERV1 -364 499 307 715 118 133 0 chr13 2525771 2525906 -99347263 - MER21A LTR ERV1 -778 153 1 569 159 45 89 chr13 2525906 2526063 -99347106 - MER21A-int LTR ERV1 0 4191 4042 1348 148 70 0 chr13 2526080 2526350 -99346819 - L1MA8 LINE L1 -22 6269 5981 405 288 93 0 chr13 2526492 2526610 -99346559 + MIR SINE MIR 110 238 -24 32 75 0 0 chr13 2527248 2527315 -99345854 + AT_rich Low_complexity Low_complexity 1 67 0 2507 84 0 0 chr13 2527336 2527647 -99345522 - AluY SINE Alu 0 311 1 2425 98 0 3 chr13 2528735 2529041 -99344128 + AluSx SINE Alu 1 305 -7 276 318 31 0 chr13 2531590 2531719 -99341450 - L1MC1 LINE L1 -5936 134 2 735 148 39 23 chr13 2531858 2531986 -99341183 - FLAM_C SINE Alu -3 130 1 316 189 132 0 chr13 2532009 2532133 -99341036 - L1MEd LINE L1 -4739 1321 895 247 325 97 0 chr13 2532630 2532744 -99340425 - MIR3 SINE MIR -2 206 82 1777 159 31 3 chr13 2533157 2533446 -99339723 + AluJb SINE Alu 6 302 -10 995 112 22 39 chr13 2534441 2534620 -99338549 - THE1C LTR MaLR 0 375 200 258 267 36 67 chr13 2534618 2534783 -99338386 - LTR16A LTR ERVL -228 222 63 * 378 224 95 20 chr13 2535128 2535275 -99337894 - MLT1H LTR MaLR 0 549 392 2084 108 0 69 chr13 2535710 2536043 -99337126 + AluSx SINE Alu 1 310 -2 3471 75 37 0 chr13 2536090 2536571 -99336598 - L1PA4 LINE L1 0 6155 5657 2097 61 0 41 chr13 2536906 2537201 -99335968 + L1PA8 LINE L1 5887 6169 -3 232 237 52 41 chr13 2537994 2538091 -99335078 - MLT1-int LTR MaLR -1269 102 5 2550 159 61 10 chr13 2538104 2538593 -99334576 + L1MB7 LINE L1 5671 6184 0 269 235 103 7 chr13 2538593 2538723 -99334446 - MLT2E LTR ERVL -14 614 472 802 243 35 31 chr13 2538851 2539106 -99334063 - MLT2E LTR ERVL -353 275 20 305 349 105 0 chr13 2539966 2540138 -99333031 - L1MC/D LINE L1 -2174 5634 5445 636 242 144 43 chr13 2540420 2540788 -99332381 - HAL1 LINE L1 -1514 993 589 307 270 138 20 chr13 2540790 2540942 -99332227 - L2 LINE L2 -231 3082 2913 2156 121 0 3 chr13 2541068 2541366 -99331803 - AluSx SINE Alu -4 308 12 318 265 114 58 chr13 2541443 2541577 -99331592 - L1MC/D LINE L1 -1065 5081 4956 2349 57 7 4 chr13 2541577 2541899 -99331270 + AluY SINE Alu 1 323 0 318 265 114 58 chr13 2541899 2542106 -99331063 - L1MC/D LINE L1 -1190 4956 4721 1937 152 0 7 chr13 2542150 2542446 -99330723 + AluJb SINE Alu 1 294 -18 2160 108 10 0 chr13 2543607 2543895 -99329274 + AluSx SINE Alu 1 291 -21 1797 130 41 0 chr13 2544853 2545143 -99328026 - AluSx SINE Alu 0 301 1 773 189 0 0 chr13 2545185 2545312 -99327857 + FLAM_C SINE Alu 1 127 -16 1729 167 7 7 chr13 2545328 2545638 -99327531 + AluSx SINE Alu 11 312 0 2378 81 3 3 chr13 2546183 2546490 -99326679 - AluSq SINE Alu -6 307 1 204 163 0 23 chr13 2546497 2546540 -99326629 + T-rich Low_complexity Low_complexity 4 45 0 26 30 0 0 chr13 2546730 2546763 -99326406 + AT_rich Low_complexity Low_complexity 1 33 0 240 335 45 53 chr13 2547267 2547397 -99325772 + L2 LINE L2 707 836 -2478 2198 90 0 68 chr13 2547397 2547718 -99325451 - AluSx SINE Alu -13 299 1 240 335 45 53 chr13 2547718 2547984 -99325185 + L2 LINE L2 836 1100 -2214 1764 191 33 15 chr13 2548799 2549160 -99324009 + L1M4c LINE L1 1227 1597 -4787 186 43 0 0 chr13 2549160 2549183 -99323986 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1764 191 33 15 chr13 2549183 2549214 -99323955 + L1M4c LINE L1 1597 1626 -4758 2149 125 3 0 chr13 2549215 2549519 -99323650 + AluSx SINE Alu 1 305 -7 6832 235 39 17 chr13 2549519 2552002 -99321167 + L1M4c LINE L1 2125 4666 -1716 1653 203 29 7 chr13 2552051 2552469 -99320700 - L1M4 LINE L1 -1272 4874 4448 2096 156 60 24 chr13 2552638 2552712 -99320457 + L1MB4 LINE L1 5705 5775 -405 1519 158 131 0 chr13 2552712 2553010 -99320159 + MER44D DNA MER2_type 1 607 -2 2096 156 60 24 chr13 2553010 2553389 -99319780 + L1MB4 LINE L1 5775 6174 -6 345 171 11 34 chr13 2553400 2553488 -99319681 + L1MB8 LINE L1 6093 6178 0 1402 199 81 0 chr13 2553500 2553772 -99319397 + AluJb SINE Alu 2 295 -17 300 190 70 60 chr13 2553774 2553874 -99319295 + L1ME3A LINE L1 5901 6001 -169 220 206 270 16 chr13 2554291 2554354 -99318815 - MIR SINE MIR -151 111 33 1024 105 0 0 chr13 2556404 2556537 -99316632 - AluSq/x SINE Alu -179 133 1 978 207 0 6 chr13 2556706 2556880 -99316289 + FAM SINE Alu 2 174 -1 1564 122 5 0 chr13 2557612 2557825 -99315344 - AluSg/x SINE Alu -22 288 75 821 138 0 0 chr13 2558355 2558471 -99314698 + AluSq/x SINE Alu 1 116 -196 324 0 0 0 chr13 2558472 2558508 -99314661 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1543 174 60 3 chr13 2558808 2559090 -99314079 - AluSq SINE Alu -15 298 1 896 234 9 14 chr13 2559311 2559525 -99313644 - MER20 DNA MER1_type -1 218 6 1557 205 21 0 chr13 2559921 2560209 -99312960 + AluJo SINE Alu 1 294 -18 2314 96 0 0 chr13 2560358 2560651 -99312518 - AluSg SINE Alu -17 293 1 1142 288 81 36 chr13 2560701 2561577 -99311592 - L2 LINE L2 -26 3287 2287 275 327 98 72 chr13 2561759 2562105 -99311064 - L2 LINE L2 -55 3217 2863 2132 112 3 7 chr13 2562163 2562459 -99310710 + AluSg SINE Alu 1 295 -15 257 322 39 17 chr13 2562544 2562724 -99310445 + HAL1 LINE L1 223 406 -2101 1441 96 0 0 chr13 2562811 2563019 -99310150 + L1P3 LINE L1 1084 1291 -5170 1683 66 0 0 chr13 2563023 2563251 -99309918 + L1P LINE L1 3500 3727 -2419 27 62 0 0 chr13 2563353 2563401 -99309768 + AT_rich Low_complexity Low_complexity 1 48 0 285 228 0 0 chr13 2564681 2564738 -99308431 + MER5A DNA MER1_type 132 188 -1 2465 80 0 0 chr13 2565507 2565809 -99307360 + AluY SINE Alu 1 302 -9 251 353 26 0 chr13 2566853 2566941 -99306228 + MIR SINE MIR 59 146 -62 204 100 320 0 chr13 2566957 2567007 -99306162 - MER5C DNA MER1_type -5 319 254 206 320 120 0 chr13 2567070 2567170 -99305999 - MER5C DNA MER1_type -208 116 5 314 218 78 97 chr13 2567494 2567751 -99305418 - L1ME4a LINE L1 -34 6087 5836 201 186 17 68 chr13 2568259 2568318 -99304851 + T-rich Low_complexity Low_complexity 6 61 0 1071 76 0 0 chr13 2568320 2568451 -99304718 - AluSg SINE Alu -179 131 1 401 219 0 0 chr13 2568455 2568537 -99304632 + MER69 DNA AcHobo 2443 2524 -2 246 386 53 12 chr13 2568580 2568751 -99304418 + L2 LINE L2 1789 1966 -1348 2342 90 0 7 chr13 2570134 2570433 -99302736 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 2571233 2571256 -99301913 + (T)n Simple_repeat Simple_repeat 1 23 0 432 299 47 0 chr13 2572631 2572758 -99300411 - L2 LINE L2 -1 3312 3180 980 212 161 20 chr13 2573307 2573599 -99299570 - MER46C DNA MER2_type -1 337 5 207 0 0 0 chr13 2575412 2575435 -99297734 + (TA)n Simple_repeat Simple_repeat 2 24 0 2297 66 49 0 chr13 2575435 2575722 -99297447 - AluY SINE Alu -10 301 1 1476 230 33 9 chr13 2576287 2576618 -99296551 - MER58B DNA MER1_type -2 339 1 524 241 43 0 chr13 2576971 2577112 -99296057 + MIR SINE MIR 92 238 -24 486 342 5 5 chr13 2577342 2577529 -99295640 + MARNA DNA Mariner 43 229 -357 234 207 0 17 chr13 2577535 2577593 -99295576 - L1MCa LINE L1 -4363 2063 2007 326 325 31 19 chr13 2578743 2578903 -99294266 - L2 LINE L2 -1370 1944 1783 2016 194 54 71 chr13 2578956 2579476 -99293693 - MER9 LTR ERVK 0 511 1 25497 171 19 15 chr13 2579476 2584708 -99288461 - HERVK9 LTR ERVK 0 7321 1626 3235 164 38 53 chr13 2584694 2585617 -99287552 - HERVK9 LTR ERVK -5046 899 1 * 2152 186 58 44 chr13 2585617 2586121 -99287048 - MER9 LTR ERVK 0 511 1 328 240 132 83 chr13 2586125 2586298 -99286871 + L1MC/D LINE L1 5448 5642 -2166 2137 118 0 30 chr13 2586298 2586603 -99286566 + AluSx SINE Alu 1 296 -16 328 240 132 83 chr13 2586603 2586717 -99286452 + L1MC/D LINE L1 5642 5749 -2059 518 181 0 0 chr13 2587630 2587713 -99285456 - FRAM/FAM SINE Alu -94 82 1 243 0 0 0 chr13 2587732 2587759 -99285410 + (A)n Simple_repeat Simple_repeat 1 27 0 347 283 44 44 chr13 2588167 2588280 -99284889 + MIR SINE MIR 29 141 -67 310 294 35 12 chr13 2588386 2588471 -99284698 + L1MA4A LINE L1 834 920 -5929 13694 181 82 12 chr13 2588471 2588506 -99284663 + L1MA4A LINE L1 2081 2112 -4893 1481 130 123 53 chr13 2588506 2588790 -99284379 - AluSg SINE Alu -6 304 1 13694 181 82 12 chr13 2588790 2593336 -99279833 + L1MA4A LINE L1 2112 6982 -23 2471 245 128 50 chr13 2593331 2593697 -99279472 + HAL1 LINE L1 1171 1507 -1000 * 774 197 31 0 chr13 2593697 2593824 -99279345 - FLAM_A SINE Alu -2 131 1 2471 245 128 50 chr13 2593824 2594390 -99278779 + HAL1 LINE L1 1507 2220 -287 2131 133 3 3 chr13 2594390 2594698 -99278471 + AluSx SINE Alu 1 308 -4 2471 245 128 50 chr13 2594698 2594966 -99278203 + HAL1 LINE L1 2220 2466 -41 2380 58 7 3 chr13 2594966 2595261 -99277908 - AluY SINE Alu -15 296 1 401 219 0 0 chr13 2595265 2595347 -99277822 + MER69 DNA AcHobo 2443 2524 -2 246 386 53 12 chr13 2595390 2595561 -99277608 + L2 LINE L2 1789 1966 -1348 2271 97 0 10 chr13 2596944 2597244 -99275925 - AluSx SINE Alu -15 297 1 207 0 0 0 chr13 2598044 2598067 -99275102 + (T)n Simple_repeat Simple_repeat 1 23 0 432 299 47 0 chr13 2599442 2599569 -99273600 - L2 LINE L2 -1 3312 3180 407 200 13 0 chr13 2600118 2600193 -99272976 - MER46C DNA MER2_type -1 337 262 1257 156 66 5 chr13 2600299 2600511 -99272658 - AluJb SINE Alu -3 309 85 602 230 15 50 chr13 2600513 2600713 -99272456 - L1M4 LINE L1 -2091 4055 3863 681 140 5 10 chr13 2600719 2600984 -99272185 - AluJb SINE Alu 0 312 1 484 263 79 44 chr13 2600987 2601215 -99271954 - L1M4 LINE L1 -2286 3860 3625 422 219 0 0 chr13 2602024 2602106 -99271063 - FRAM/FAM SINE Alu -95 81 1 234 0 0 0 chr13 2602126 2602152 -99271017 + (A)n Simple_repeat Simple_repeat 1 26 0 513 260 47 39 chr13 2602560 2602687 -99270482 + MIR3 SINE MIR 29 156 -52 745 321 87 44 chr13 2602864 2603156 -99270013 + L1MEd LINE L1 78 356 -5763 2211 82 0 36 chr13 2603156 2603459 -99269710 + AluSq SINE Alu 1 292 -21 745 321 87 44 chr13 2603459 2603708 -99269461 + L1MEd LINE L1 356 642 -5477 890 233 17 0 chr13 2603835 2604011 -99269158 - AluJo SINE Alu -17 295 117 23 0 0 0 chr13 2604018 2604041 -99269128 + AT_rich Low_complexity Low_complexity 1 23 0 2184 109 3 0 chr13 2604041 2604334 -99268835 - AluSg SINE Alu -16 294 1 199 365 17 26 chr13 2605397 2605512 -99267657 - L3 LINE CR1 -81 1496 1383 276 228 158 10 chr13 2606564 2606665 -99266504 + MER112 DNA MER1_type 101 216 -44 1517 290 119 58 chr13 2607203 2607328 -99265841 - L2 LINE L2 -11 3302 3186 2103 115 10 10 chr13 2607328 2607632 -99265537 - AluSg SINE Alu -6 304 1 1517 290 119 58 chr13 2607632 2608650 -99264519 - L2 LINE L2 -127 3186 2047 749 47 0 0 chr13 2608812 2608898 -99264271 - AluSg/x SINE Alu -8 304 219 2073 69 0 36 chr13 2608898 2609173 -99263996 - AluSg1 SINE Alu -44 265 1 1984 144 20 0 chr13 2609561 2609853 -99263316 + AluSx SINE Alu 1 298 -14 1777 144 30 4 chr13 2610044 2610315 -99262854 + AluJo SINE Alu 1 278 -34 1190 257 121 66 chr13 2610315 2610467 -99262702 + L1MCc LINE L1 1177 1319 -5803 2369 75 0 3 chr13 2610467 2610762 -99262407 + AluY SINE Alu 1 294 -17 1190 257 121 66 chr13 2610762 2611547 -99261622 + L1MCc LINE L1 1319 2423 -4699 2172 87 31 3 chr13 2611547 2611835 -99261334 + AluSx SINE Alu 1 296 -16 1190 257 121 66 chr13 2611835 2612105 -99261064 + L1MCc LINE L1 2423 2677 -4445 1839 171 0 0 chr13 2612231 2612523 -99260646 + AluJo SINE Alu 1 292 -20 1885 212 74 4 chr13 2612529 2613001 -99260168 + L1MC4 LINE L1 7122 7626 -416 1816 162 7 10 chr13 2613003 2613300 -99259869 + AluSx SINE Alu 1 296 -16 644 183 7 0 chr13 2613300 2613437 -99259732 + GA-rich Low_complexity Low_complexity 1 138 0 201 111 0 0 chr13 2613437 2613464 -99259705 + (GGGGA)n Simple_repeat Simple_repeat 3 29 0 476 237 17 0 chr13 2613464 2613582 -99259587 + L1MC4 LINE L1 7613 7732 -310 457 202 36 0 chr13 2613588 2613672 -99259497 - Tigger5 DNA MER2_type 0 2323 2237 374 167 28 14 chr13 2613726 2613798 -99259371 - Tigger5 DNA MER2_type 0 2323 2251 257 226 19 0 chr13 2613768 2613821 -99259348 - Tigger5 DNA MER2_type -2268 55 2 * 1015 215 98 7 chr13 2613823 2614110 -99259059 + L1MC4 LINE L1 7741 8041 -1 1007 190 0 0 chr13 2614117 2614291 -99258878 + FRAM SINE Alu 1 172 -4 442 237 20 33 chr13 2614294 2614446 -99258723 + L1MCc LINE L1 2837 2986 -4136 602 209 44 21 chr13 2614486 2614616 -99258553 + L1M1 LINE L1 3537 3671 -3894 1769 159 72 30 chr13 2614616 2614950 -99258219 + MER7A DNA MER2_type 1 346 0 602 209 44 21 chr13 2614950 2614991 -99258178 + L1M1 LINE L1 3671 3710 -3855 2051 134 3 13 chr13 2615004 2615310 -99257859 + AluSx SINE Alu 1 303 -9 683 329 175 14 chr13 2615363 2616127 -99257042 - L2 LINE L2 -1796 1518 573 2351 80 10 13 chr13 2616157 2616459 -99256710 - AluSg SINE Alu 0 310 1 202 306 116 16 chr13 2618040 2618161 -99255008 - L3 LINE CR1 -139 1438 1306 23 54 0 0 chr13 2618802 2618839 -99254330 + GC_rich Low_complexity Low_complexity 1 37 0 201 183 32 65 chr13 2618841 2618934 -99254235 + G-rich Low_complexity Low_complexity 3 92 0 31 82 0 0 chr13 2618983 2619056 -99254113 + GC_rich Low_complexity Low_complexity 1 73 0 38 61 0 0 chr13 2619144 2619210 -99253959 + GC_rich Low_complexity Low_complexity 1 66 0 305 223 33 12 chr13 2619414 2619665 -99253504 + (CGGGG)n Simple_repeat Simple_repeat 1 256 0 1742 168 10 7 chr13 2620533 2620825 -99252344 + AluJo SINE Alu 16 308 -4 210 321 179 28 chr13 2621595 2621807 -99251362 - L2 LINE L2 -849 2465 2222 1502 170 93 14 chr13 2622284 2622573 -99250596 + AluJb SINE Alu 1 312 0 1636 187 7 14 chr13 2622633 2622927 -99250242 - AluJb SINE Alu -20 292 1 2203 138 0 0 chr13 2623013 2623311 -99249858 - AluSx SINE Alu -10 302 5 306 332 108 13 chr13 2623504 2623820 -99249349 + L1MC4a LINE L1 4965 5310 -836 1653 92 176 44 chr13 2623820 2624093 -99249076 + AluSg1 SINE Alu 1 309 0 691 281 204 18 chr13 2624280 2624672 -99248497 + L1MC4a LINE L1 5495 5959 -1849 2421 80 0 46 chr13 2625434 2625759 -99247410 + AluSp SINE Alu 1 310 -3 681 186 106 53 chr13 2626017 2626085 -99247084 - MSTD LTR MaLR 0 396 333 2372 104 3 0 chr13 2626085 2626383 -99246786 + AluSp SINE Alu 1 299 -14 681 186 106 53 chr13 2626383 2626502 -99246667 - MSTD LTR MaLR -63 333 199 501 159 53 18 chr13 2626531 2626644 -99246525 - MSTD LTR MaLR -279 117 1 235 290 29 0 chr13 2626924 2626993 -99246176 + L1MC/D LINE L1 5713 5783 -2025 2308 86 3 7 chr13 2627408 2627700 -99245469 + AluSx SINE Alu 1 291 -21 526 194 31 0 chr13 2627979 2628108 -99245061 + CT-rich Low_complexity Low_complexity 4 136 0 219 271 4 4 chr13 2629546 2629620 -99243549 + MIR SINE MIR 79 153 -55 493 209 15 45 chr13 2630269 2630403 -99242766 + MER5B DNA MER1_type 8 137 -41 217 274 208 19 chr13 2630681 2630787 -99242382 - MER5A DNA MER1_type 0 189 64 1893 116 65 34 chr13 2630843 2631137 -99242032 - AluJb SINE Alu -9 303 1 247 319 0 14 chr13 2631137 2631209 -99241960 - MER5A DNA MER1_type -114 75 5 547 248 35 25 chr13 2631318 2631516 -99241653 - L1M4 LINE L1 -1379 4767 4568 247 289 158 9 chr13 2631630 2631744 -99241425 - MIR3 SINE MIR -46 162 32 349 363 0 11 chr13 2633444 2633623 -99239546 + (CACG)n Simple_repeat Simple_repeat 1 177 0 * 489 309 3 0 chr13 2633492 2634134 -99239035 + (CA)n Simple_repeat Simple_repeat 1 643 0 427 333 3 3 chr13 2634155 2634476 -99238693 + (CA)n Simple_repeat Simple_repeat 1 321 0 301 274 76 6 chr13 2634433 2634590 -99238579 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 440 297 108 19 chr13 2634668 2634880 -99238289 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 2635749 2635827 -99237342 + L2 LINE L2 2420 2498 -816 2653 33 0 3 chr13 2638751 2639053 -99234116 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 2639501 2639611 -99233558 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 2639816 2640119 -99233050 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 2640119 2640436 -99232733 + AluSg SINE Alu 1 298 -12 2349 108 0 0 chr13 2642026 2642322 -99230847 - AluSq SINE Alu -12 301 6 1962 138 3 39 chr13 2642611 2642923 -99230246 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 2643008 2643465 -99229704 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 2643879 2643984 -99229185 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 2644592 2644636 -99228533 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 2645246 2645269 -99227900 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 2645616 2645719 -99227450 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 2645722 2645774 -99227395 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 2645778 2646235 -99226934 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 2646236 2646371 -99226798 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 2646424 2646518 -99226651 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 2646581 2646660 -99226509 + MIR3 SINE MIR 82 160 -48 522 291 101 11 chr13 2646688 2646877 -99226292 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 2647438 2647739 -99225430 - AluSx SINE Alu -12 300 1 2430 96 0 0 chr13 2648201 2648502 -99224667 - AluSg SINE Alu -9 301 1 534 189 117 0 chr13 2648510 2648621 -99224548 - AluJb SINE Alu -188 124 1 315 262 139 25 chr13 2648621 2648743 -99224426 + L1MC4a LINE L1 5778 5913 -1895 380 260 38 46 chr13 2649182 2649399 -99223770 + L1MEc LINE L1 1854 2040 -4500 578 315 46 0 chr13 2649454 2649673 -99223496 + MIR SINE MIR 34 262 0 893 71 0 0 chr13 2649677 2649824 -99223345 - Alu SINE Alu 0 315 169 2038 276 131 21 chr13 2650017 2651817 -99221352 + HAL1 LINE L1 1 2023 -484 597 82 0 0 chr13 2651835 2651920 -99221249 - AluY SINE Alu -8 303 219 303 328 12 12 chr13 2652040 2652211 -99220958 + (CCCA)n Simple_repeat Simple_repeat 3 173 0 * 427 315 6 0 chr13 2652123 2652301 -99220868 + (CA)n Simple_repeat Simple_repeat 1 179 0 301 274 76 6 chr13 2652258 2652415 -99220754 + (CCCA)n Simple_repeat Simple_repeat 3 170 0 * 440 297 108 19 chr13 2652493 2652705 -99220464 - L1MC4a LINE L1 -2 7806 7576 183 282 51 39 chr13 2653573 2653651 -99219518 + L2 LINE L2 2420 2498 -816 2688 33 0 0 chr13 2656575 2656876 -99216293 - AluY SINE Alu -10 301 1 291 254 191 9 chr13 2657324 2657434 -99215735 + MIR SINE MIR 103 232 -30 2407 92 0 7 chr13 2657639 2657942 -99215227 + AluSq SINE Alu 1 301 -12 2171 88 3 63 chr13 2657942 2658259 -99214910 + AluSg SINE Alu 1 298 -12 2184 114 7 0 chr13 2659849 2660138 -99213031 - AluSq SINE Alu -12 301 11 1962 138 3 39 chr13 2660434 2660746 -99212423 - AluJb SINE Alu -11 301 1 1245 248 69 7 chr13 2660831 2661288 -99211881 - L1MD2 LINE L1 -12 6347 5835 293 295 67 9 chr13 2661701 2661806 -99211363 + MIR3 SINE MIR 90 200 -8 200 159 0 23 chr13 2662414 2662458 -99210711 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr13 2663068 2663091 -99210078 + AT_rich Low_complexity Low_complexity 1 23 0 554 165 29 0 chr13 2663438 2663541 -99209628 - AluJ SINE Alu -17 295 190 258 231 0 0 chr13 2663544 2663596 -99209573 + LTR30 LTR ERV1 1 52 -670 2802 127 18 9 chr13 2663600 2664057 -99209112 + LTR12 LTR ERV1 123 583 -131 646 215 37 0 chr13 2664058 2664193 -99208976 - AluJ SINE Alu -125 187 48 430 213 11 11 chr13 2664246 2664340 -99208829 + FRAM SINE Alu 1 93 -83 235 354 0 0 chr13 2664403 2664482 -99208687 + MIR3 SINE MIR 82 160 -48 532 289 95 11 chr13 2664510 2664700 -99208469 - MIR SINE MIR 0 262 57 2292 93 7 10 chr13 2665263 2665564 -99207605 - AluSx SINE Alu -12 300 1 2389 92 0 3 chr13 2666026 2666330 -99206839 - AluSx SINE Alu -9 303 1 4040 200 78 33 chr13 2666331 2666589 -99206580 + L1MB7 LINE L1 4095 4340 -1844 1077 141 77 0 chr13 2666589 2666759 -99206410 + U2 snRNA snRNA 5 187 -1 4040 200 78 33 chr13 2666759 2668200 -99204969 + L1MB7 LINE L1 4340 5901 -283 417 81 242 0 chr13 2668200 2668262 -99204907 - MADE1 DNA Mariner 0 80 4 4040 200 78 33 chr13 2668262 2668560 -99204609 + L1MB7 LINE L1 5901 6184 0 575 221 58 0 chr13 2668557 2668711 -99204458 + L1M4 LINE L1 3758 3920 -2226 * 307 221 96 10 chr13 2668701 2668805 -99204364 - L1M4 LINE L1 -2154 3992 3880 * 1652 198 121 5 chr13 2668783 2669188 -99203981 + L1MD1 LINE L1 5783 6234 -8 2457 82 0 0 chr13 2669232 2669538 -99203631 - AluY SINE Alu -5 306 1 233 190 0 35 chr13 2669748 2669806 -99203363 - L1MC4 LINE L1 -1339 6703 6648 26 50 0 0 chr13 2670339 2670379 -99202790 + AT_rich Low_complexity Low_complexity 1 40 0 3088 175 30 25 chr13 2670513 2671103 -99202066 + MER7C DNA MER2_type 10 602 0 1398 141 77 12 chr13 2671103 2671350 -99201819 - Tigger3(Golem) DNA MER2_type -2744 285 23 1347 94 0 0 chr13 2671360 2671541 -99201628 - AluY SINE Alu -4 307 127 879 195 39 66 chr13 2672540 2672796 -99200373 + L1MC5 LINE L1 7176 7424 -537 1783 194 38 3 chr13 2673114 2673455 -99199714 + L1MB7 LINE L1 5730 6082 -102 4771 112 12 155 chr13 2673455 2675029 -99198140 - pTR5 LTR ERV1 0 2606 1524 520 53 11 117 chr13 2675037 2675066 -99198103 + L1MB7 LINE L1 6089 6119 -65 2134 107 3 3 chr13 2675066 2675357 -99197812 + AluSg SINE Alu 2 292 -18 520 53 11 117 chr13 2675357 2675421 -99197748 + L1MB7 LINE L1 6119 6172 -12 2391 91 3 0 chr13 2675999 2676295 -99196874 - AluSc SINE Alu -12 297 1 575 253 35 29 chr13 2676542 2676716 -99196453 - L1MC4 LINE L1 -2085 5723 5549 266 264 86 0 chr13 2676730 2676893 -99196276 - L1MC4 LINE L1 -723 5439 5263 1121 256 20 8 chr13 2676924 2677401 -99195768 + MER90 LTR ERV1 74 614 0 324 248 95 22 chr13 2677401 2677538 -99195631 - L1MC4 LINE L1 -881 5265 5119 2104 139 0 16 chr13 2677592 2677908 -99195261 - AluSx SINE Alu -1 311 1 187 278 0 37 chr13 2678010 2678064 -99195105 + L2 LINE L2 3008 3059 -213 7647 95 8 6 chr13 2678208 2680037 -99193132 - L1PA8 LINE L1 0 6172 4340 2356 110 0 0 chr13 2680109 2680418 -99192751 + AluSg1 SINE Alu 1 309 0 2193 113 0 3 chr13 2680699 2680991 -99192178 - AluSg SINE Alu -19 291 1 2397 81 3 0 chr13 2682000 2682296 -99190873 - AluSx SINE Alu -7 305 9 2382 38 11 3 chr13 2682694 2682981 -99190188 + AluY SINE Alu 1 289 -22 1314 193 60 60 chr13 2734018 2734172 -99138997 + MER58B DNA MER1_type 11 164 -2256 2273 110 0 0 chr13 2734172 2734472 -99138697 - AluSp SINE Alu -13 300 1 1314 193 60 60 chr13 2734472 2734648 -99138521 + MER58B DNA MER1_type 163 341 0 21 36 0 0 chr13 2734998 2735026 -99138143 + AT_rich Low_complexity Low_complexity 1 28 0 362 289 134 25 chr13 2735252 2735491 -99137678 - L2 LINE L2 -824 2490 2226 1907 223 60 10 chr13 2736796 2737293 -99135876 + Charlie1b DNA MER1_type 2 523 0 2026 111 19 26 chr13 2738391 2738698 -99134471 + AluSx SINE Alu 1 305 -7 276 185 420 17 chr13 2739344 2739463 -99133706 + L1MC5 LINE L1 7747 7913 -48 797 159 0 15 chr13 2739561 2739693 -99133476 - FLAM_C SINE Alu -3 130 1 21 0 0 0 chr13 2739847 2739868 -99133301 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 2741705 2741728 -99131441 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 2742239 2742264 -99130905 + (T)n Simple_repeat Simple_repeat 1 25 0 31 0 0 0 chr13 2743626 2743657 -99129512 + AT_rich Low_complexity Low_complexity 1 31 0 214 337 117 42 chr13 2743657 2743756 -99129413 - L2 LINE L2 -36 3236 3146 1119 188 119 50 chr13 2743756 2744076 -99129093 + MER2 DNA MER2_type 3 344 0 214 337 117 42 chr13 2744076 2744285 -99128884 - L2 LINE L2 -126 3146 2905 478 187 134 0 chr13 2744683 2744817 -99128352 + L1M4 LINE L1 4263 4414 -1732 1034 194 45 5 chr13 2744818 2745019 -99128150 + AluJb SINE Alu 84 292 -20 1752 174 7 7 chr13 2745114 2745396 -99127773 + AluJb SINE Alu 1 282 -30 23 0 0 0 chr13 2745396 2745419 -99127750 + AT_rich Low_complexity Low_complexity 1 23 0 717 220 13 13 chr13 2745437 2745596 -99127573 - FRAM SINE Alu -11 165 7 21 36 0 0 chr13 2745762 2745790 -99127379 + AT_rich Low_complexity Low_complexity 1 28 0 395 100 0 0 chr13 2746127 2746177 -99126992 - MER8 DNA MER2_type 0 239 190 * 2398 148 39 11 chr13 2746172 2746610 -99126559 + Tigger2 DNA MER2_type 2269 2718 0 2374 164 25 39 chr13 2747088 2747601 -99125568 - L1MB8 LINE L1 -1 6177 5672 889 186 45 45 chr13 2747603 2747802 -99125367 - MER20 DNA MER1_type -20 199 1 1651 167 25 41 chr13 2747822 2748026 -99125143 - AluSx SINE Alu 0 312 113 1952 125 24 53 chr13 2748026 2748401 -99124768 - THE1B LTR MaLR 0 364 1 1651 167 25 41 chr13 2748401 2748513 -99124656 - AluSx SINE Alu -199 113 1 1488 203 119 21 chr13 2748908 2749489 -99123680 - Charlie2 DNA MER1_type -322 2540 1903 240 250 111 9 chr13 2749527 2749635 -99123534 - Charlie2 DNA MER1_type -2544 318 200 2118 115 60 3 chr13 2750020 2750351 -99122818 + MER41C LTR ERV1 1 350 -204 456 151 24 24 chr13 2750351 2750477 -99122692 + (TA)n Simple_repeat Simple_repeat 1 126 0 1052 138 76 57 chr13 2750486 2750696 -99122473 + MER41C LTR ERV1 341 554 0 1326 269 116 14 chr13 2751057 2751163 -99122006 + L2 LINE L2 2552 2646 -667 1952 126 13 23 chr13 2751163 2751472 -99121697 - AluSx SINE Alu -6 306 1 1326 269 116 14 chr13 2751472 2752046 -99121123 + L2 LINE L2 2646 3307 -6 2421 89 0 0 chr13 2752768 2753072 -99120097 - AluSc SINE Alu -5 304 1 573 291 0 7 chr13 2754241 2754389 -99118780 + MIR SINE MIR 6 152 -110 611 274 185 71 chr13 2757287 2757506 -99115663 - L2 LINE L2 -372 2942 2749 2191 128 0 0 chr13 2757506 2757812 -99115357 - AluSx SINE Alu -6 306 1 611 274 185 71 chr13 2757812 2758253 -99114916 - L2 LINE L2 -565 2749 2207 1665 120 0 0 chr13 2758315 2758532 -99114637 + AluSq SINE Alu 3 219 -94 275 200 71 24 chr13 2758571 2758656 -99114513 + L1 LINE L1 4882 4970 -1176 1369 174 4 4 chr13 2758827 2759069 -99114100 + L1MD3 LINE L1 7732 7973 -22 512 287 125 23 chr13 2759108 2759144 -99114025 + L1MC1 LINE L1 5188 5219 -1178 1530 125 225 36 chr13 2759144 2759504 -99113665 - MSTA LTR MaLR 0 428 1 512 287 125 23 chr13 2759504 2759885 -99113284 + L1MC1 LINE L1 5219 5649 -748 2142 144 0 0 chr13 2759900 2760199 -99112970 + AluSx SINE Alu 1 299 -13 2047 135 75 28 chr13 2761300 2761700 -99111469 + L1MC1 LINE L1 5906 6324 -9 1711 148 47 7 chr13 2764028 2764305 -99108864 - AluSx SINE Alu -23 289 2 38 51 0 0 chr13 2764823 2764882 -99108287 + AT_rich Low_complexity Low_complexity 1 59 0 2130 110 0 7 chr13 2765044 2765343 -99107826 - AluSq SINE Alu -16 297 1 2322 89 0 0 chr13 2765600 2765891 -99107278 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr13 2766266 2766295 -99106874 + AT_rich Low_complexity Low_complexity 1 29 0 390 224 0 0 chr13 2767468 2767535 -99105634 - MER58A DNA MER1_type -39 68 2 2045 167 129 21 chr13 2767906 2767989 -99105180 + MLT1C LTR MaLR 1 74 -393 2143 111 24 0 chr13 2767989 2768278 -99104891 + AluSx SINE Alu 1 296 -16 2045 167 129 21 chr13 2768278 2768614 -99104555 + MLT1C LTR MaLR 74 465 -2 2052 143 0 13 chr13 2768856 2769170 -99103999 + AluSx SINE Alu 1 310 -2 183 156 0 0 chr13 2769501 2769533 -99103636 + (CATA)n Simple_repeat Simple_repeat 3 34 0 508 288 93 42 chr13 2769595 2769810 -99103359 + MIR SINE MIR 23 248 -14 1588 213 7 7 chr13 2772181 2772477 -99100692 - AluJb SINE Alu -16 296 1 283 260 40 0 chr13 2772681 2772781 -99100388 - Charlie2 DNA MER1_type -158 2704 2601 2400 88 0 3 chr13 2773040 2773346 -99099823 - AluSg SINE Alu 0 310 6 2454 77 0 3 chr13 2773397 2773707 -99099462 + AluY SINE Alu 1 309 -2 654 153 0 0 chr13 2773716 2773814 -99099355 - FRAM SINE Alu -37 139 42 2565 142 42 35 chr13 2773814 2774055 -99099114 + L1MB8 LINE L1 5649 5887 -291 1950 129 3 3 chr13 2774055 2774341 -99098828 + AluSx SINE Alu 5 290 -22 2565 142 42 35 chr13 2774341 2774620 -99098549 + L1MB8 LINE L1 5887 6173 -5 828 167 0 35 chr13 2774626 2774770 -99098399 + AluJo SINE Alu 3 141 -171 2058 145 3 3 chr13 2774770 2775080 -99098089 + AluSx SINE Alu 1 310 -2 1787 154 11 4 chr13 2775267 2775576 -99097593 - AluJb SINE Alu 0 312 2 468 192 10 39 chr13 2776323 2776427 -99096742 + MER31A LTR ERV1 353 453 -32 438 223 194 23 chr13 2777094 2777262 -99095907 - MIR SINE MIR -16 246 41 2026 120 7 7 chr13 2779955 2780247 -99092922 + AluSx SINE Alu 1 292 -20 240 259 116 0 chr13 2781746 2781858 -99091311 - L1ME4a LINE L1 -65 6056 5932 26 64 0 0 chr13 2783273 2783320 -99089849 + AT_rich Low_complexity Low_complexity 1 47 0 259 276 95 48 chr13 2783373 2783478 -99089691 + MIR SINE MIR 38 147 -61 2193 117 0 0 chr13 2784889 2785179 -99087990 + AluSx SINE Alu 1 290 -22 443 250 132 7 chr13 2785359 2785495 -99087674 - MIR SINE MIR -108 154 2 1436 198 59 7 chr13 2785563 2785851 -99087318 + AluJo SINE Alu 1 303 -9 1611 186 26 10 chr13 2786498 2786804 -99086365 + AluJb SINE Alu 1 311 -1 207 193 23 45 chr13 2787635 2787723 -99085446 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chr13 2787913 2787942 -99085227 + AT_rich Low_complexity Low_complexity 1 29 0 1821 139 16 32 chr13 2788115 2788425 -99084744 + AluJb SINE Alu 1 305 -7 532 187 41 57 chr13 2788436 2788559 -99084610 + FRAM SINE Alu 2 122 -54 930 176 29 29 chr13 2788787 2788992 -99084177 - MER3 DNA MER1_type -3 206 2 352 300 25 0 chr13 2789058 2789178 -99083991 + L1ME1 LINE L1 6039 6161 -5 25 75 0 0 chr13 2790111 2790164 -99083005 + AT_rich Low_complexity Low_complexity 1 53 0 2262 102 3 3 chr13 2790246 2790550 -99082619 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr13 2790655 2790684 -99082485 + AT_rich Low_complexity Low_complexity 1 29 0 645 271 134 4 chr13 2790945 2791172 -99081997 + MIR SINE MIR 6 256 -6 376 269 32 0 chr13 2791671 2791764 -99081405 - MER94 DNA DNA -15 119 24 198 274 0 95 chr13 2792020 2792104 -99081065 + L2 LINE L2 3197 3272 0 398 234 183 77 chr13 2792388 2792519 -99080650 - MIR SINE MIR 0 262 146 2450 64 0 0 chr13 2792519 2792817 -99080352 + AluY SINE Alu 1 298 -13 398 234 183 77 chr13 2792817 2792920 -99080249 - MIR SINE MIR -116 146 3 284 228 354 6 chr13 2793081 2793239 -99079930 + L1MC4 LINE L1 7466 7678 -364 386 261 54 8 chr13 2793425 2793555 -99079614 + L1MC4 LINE L1 7817 7952 -90 284 211 0 0 chr13 2793585 2793637 -99079532 + FAM SINE Alu 116 167 -12 2204 118 0 3 chr13 2793663 2793968 -99079201 + AluSg SINE Alu 1 304 -6 345 100 0 0 chr13 2793973 2794023 -99079146 + (TA)n Simple_repeat Simple_repeat 2 51 0 732 165 0 31 chr13 2794123 2794250 -99078919 + FLAM_C SINE Alu 1 123 -10 2210 93 6 19 chr13 2794260 2794392 -99078777 + AluSc SINE Alu 1 133 -176 2341 97 0 0 chr13 2794392 2794701 -99078468 + AluY SINE Alu 1 309 -2 2210 93 6 19 chr13 2794701 2794879 -99078290 + AluSc SINE Alu 133 307 -2 354 255 121 13 chr13 2795147 2795296 -99077873 - MIR SINE MIR -21 241 77 21 57 0 0 chr13 2795397 2795432 -99077737 + AT_rich Low_complexity Low_complexity 1 35 0 2167 144 0 0 chr13 2796363 2796669 -99076500 - AluSx SINE Alu -6 306 1 2226 115 0 10 chr13 2796844 2797156 -99076013 - AluSc SINE Alu 0 309 1 785 154 22 7 chr13 2797555 2797691 -99075478 - FLAM_C SINE Alu -1 142 5 29 0 0 0 chr13 2798210 2798239 -99074930 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr13 2799210 2799239 -99073930 + AT_rich Low_complexity Low_complexity 1 29 0 239 374 40 0 chr13 2799542 2799641 -99073528 - MIR3 SINE MIR -34 174 72 2309 101 7 0 chr13 2800209 2800506 -99072663 - AluSp SINE Alu -14 299 1 202 219 27 27 chr13 2801324 2801397 -99071772 + A-rich Low_complexity Low_complexity 5 77 0 240 196 61 20 chr13 2802549 2802645 -99070524 - MIR SINE MIR -72 136 81 21 0 0 0 chr13 2803632 2803653 -99069516 + AT_rich Low_complexity Low_complexity 1 21 0 1786 125 59 7 chr13 2805171 2805459 -99067710 + AluSx SINE Alu 1 303 -9 1957 127 0 20 chr13 2805498 2805797 -99067372 + AluSx SINE Alu 5 297 -15 1845 127 76 0 chr13 2805817 2806092 -99067077 + AluSx SINE Alu 1 296 -16 1841 166 17 0 chr13 2806155 2806456 -99066713 - AluJb SINE Alu -6 306 1 626 201 174 0 chr13 2806517 2806666 -99066503 - AluSg/x SINE Alu 0 310 136 1093 177 5 0 chr13 2806668 2806854 -99066315 - AluJo SINE Alu -12 300 114 240 162 0 0 chr13 2806858 2806895 -99066274 + Alu SINE Alu 6 42 -91 218 288 72 78 chr13 2807382 2807535 -99065634 - MER5A DNA MER1_type 0 189 38 218 245 41 0 chr13 2807847 2807896 -99065273 - MIR SINE MIR 0 262 212 879 200 35 0 chr13 2807960 2808130 -99065039 - MIR SINE MIR -70 192 17 370 292 102 0 chr13 2808728 2808865 -99064304 - L2 LINE L2 -8 3305 3155 1149 130 12 0 chr13 2808988 2809150 -99064019 - AluSg/x SINE Alu -19 293 130 645 283 88 4 chr13 2809221 2809447 -99063722 - MIR SINE MIR -2 260 16 1570 189 67 54 chr13 2809736 2810060 -99063109 + MSTD LTR MaLR 1 332 -64 2264 86 3 3 chr13 2810060 2810352 -99062817 + AluSx SINE Alu 1 292 -20 1570 189 67 54 chr13 2810352 2810418 -99062751 + MSTD LTR MaLR 332 396 0 199 308 0 31 chr13 2811062 2811127 -99062042 + MIR SINE MIR 30 92 -116 284 291 179 35 chr13 2811188 2811316 -99061853 + L1ME3 LINE L1 4561 4669 -1477 2064 119 6 44 chr13 2811316 2811636 -99061533 + AluSq SINE Alu 1 308 -5 284 291 179 35 chr13 2811636 2811992 -99061177 + L1ME3 LINE L1 4669 5115 -1031 2126 106 228 6 chr13 2812093 2812453 -99060716 - LTR12 LTR ERV1 -234 480 41 239 143 0 0 chr13 2812453 2812495 -99060674 - LTR30 LTR ERV1 -680 42 1 429 257 99 82 chr13 2812537 2812582 -99060587 + L1ME3 LINE L1 5258 5301 -863 757 289 65 59 chr13 2812582 2813088 -99060081 + MLT1J LTR MaLR 1 509 -2 429 257 99 82 chr13 2813088 2813276 -99059893 + L1ME3 LINE L1 5301 5484 -680 1400 177 130 0 chr13 2813276 2813530 -99059639 + AluSx SINE Alu 5 291 -21 429 257 99 82 chr13 2813530 2813962 -99059207 + L1ME3 LINE L1 5484 5939 -225 395 303 113 50 chr13 2814259 2814622 -99058547 + L1MEd LINE L1 88 473 -5732 255 227 163 23 chr13 2814871 2815043 -99058126 + L1MEd LINE L1 727 922 -5283 3327 165 88 63 chr13 2815064 2815503 -99057666 + L1MB3 LINE L1 5143 5569 -614 2443 73 0 3 chr13 2815503 2815806 -99057363 + AluSg SINE Alu 4 305 -5 3327 165 88 63 chr13 2815806 2816027 -99057142 + L1MB3 LINE L1 5569 5783 -400 1903 156 0 3 chr13 2816027 2816322 -99056847 + AluJb SINE Alu 5 298 -14 3327 165 88 63 chr13 2816322 2816595 -99056574 + L1MB3 LINE L1 5783 6099 -84 2359 88 0 7 chr13 2816623 2816918 -99056251 - AluY SINE Alu -18 293 1 334 229 73 37 chr13 2817001 2817110 -99056059 + L1ME3 LINE L1 6047 6159 -3 2245 131 0 6 chr13 2817174 2817488 -99055681 + AluSx SINE Alu 1 312 0 1953 157 130 3 chr13 2817559 2817935 -99055234 - MSTB LTR MaLR -2 424 1 2133 119 7 0 chr13 2817954 2818249 -99054920 + AluSq SINE Alu 1 297 -16 239 276 0 26 chr13 2818276 2818352 -99054817 + LTR33 LTR ERVL 41 114 -407 367 195 87 60 chr13 2818445 2818594 -99054575 + LTR33 LTR ERVL 369 521 0 580 286 83 25 chr13 2818662 2819061 -99054108 + L1MEd LINE L1 1317 1738 -4658 2324 91 7 0 chr13 2819116 2819414 -99053755 - AluSp SINE Alu -13 300 1 1385 179 31 45 chr13 2819441 2819732 -99053437 + AluJb SINE Alu 1 287 -25 360 119 0 0 chr13 2819734 2819793 -99053376 + (CAATC)n Simple_repeat Simple_repeat 2 60 0 1570 175 4 15 chr13 2819793 2820061 -99053108 - AluJb SINE Alu -47 265 1 693 215 0 15 chr13 2820085 2820220 -99052949 + FRAM SINE Alu 34 166 -10 2104 82 50 7 chr13 2820290 2820598 -99052571 - AluSp SINE Alu 0 313 1 351 283 66 11 chr13 2820670 2821005 -99052164 + L1MEd LINE L1 2033 2360 -3855 684 200 0 0 chr13 2821013 2821128 -99052041 + FLAM_C SINE Alu 9 123 -20 305 322 54 20 chr13 2821461 2821610 -99051559 + L1MEd LINE L1 2746 2899 -3316 305 186 186 85 chr13 2821634 2821680 -99051489 + L1MEd LINE L1 3201 3241 -2974 1919 139 10 10 chr13 2821680 2821981 -99051188 + AluSx SINE Alu 1 301 -11 305 186 186 85 chr13 2821981 2822133 -99051036 + L1MEd LINE L1 3241 3419 -2796 2382 86 13 0 chr13 2822141 2822443 -99050726 + AluSp SINE Alu 1 306 -7 332 272 28 67 chr13 2822481 2822661 -99050508 + L1MEd LINE L1 3646 3818 -2397 642 110 42 68 chr13 2822671 2822789 -99050380 + L1MA7 LINE L1 6174 6288 -3 2043 140 6 19 chr13 2822922 2823236 -99049933 + AluSx SINE Alu 1 310 -2 2187 121 0 13 chr13 2823238 2823543 -99049626 + AluSq SINE Alu 1 301 -12 1240 177 55 52 chr13 2823543 2823702 -99049467 + Looper DNA T2_type 341 503 -1055 1615 184 3 33 chr13 2823702 2824006 -99049163 - AluJb SINE Alu -17 295 1 1240 177 55 52 chr13 2824006 2824156 -99049013 + Looper DNA T2_type 503 651 -907 2255 82 7 33 chr13 2824157 2824461 -99048708 - AluSq SINE Alu -16 297 2 645 247 129 0 chr13 2824477 2824647 -99048522 - MER3 DNA MER1_type -1 208 17 2339 203 78 19 chr13 2824663 2824744 -99048425 + Looper DNA T2_type 662 737 -821 1086 200 43 0 chr13 2824744 2824954 -99048215 + MER20 DNA MER1_type 1 219 0 2339 203 78 19 chr13 2824954 2825438 -99047731 + Looper DNA T2_type 737 1260 -298 375 115 77 115 chr13 2825432 2825516 -99047653 + Looper DNA T2_type 1166 1247 -311 * 1957 163 0 3 chr13 2825516 2825822 -99047347 + AluJo SINE Alu 1 305 -7 375 115 77 115 chr13 2825822 2825841 -99047328 + Looper DNA T2_type 1247 1265 -293 1929 155 3 3 chr13 2825866 2826169 -99047000 + AluJb SINE Alu 1 303 -9 2193 105 3 40 chr13 2826175 2826500 -99046669 + AluSp SINE Alu 1 313 0 226 178 44 0 chr13 2826516 2826561 -99046608 + MER3 DNA MER1_type 41 87 -122 * 530 250 16 0 chr13 2826553 2826677 -99046492 - MER3 DNA MER1_type -82 127 2 417 235 8 53 chr13 2826777 2826909 -99046260 - MIR SINE MIR 0 262 137 2186 111 3 3 chr13 2826930 2827228 -99045941 + AluSx SINE Alu 1 298 -14 414 221 93 0 chr13 2827228 2827314 -99045855 - FLAM_A SINE Alu -20 113 20 404 111 79 0 chr13 2827365 2827458 -99045711 - AluSp/q SINE Alu 0 317 220 1980 104 0 4 chr13 2827487 2827738 -99045431 - AluSx SINE Alu -62 250 1 247 323 81 0 chr13 2827857 2827981 -99045188 - L2 LINE L2 -5 3267 3134 1183 157 63 22 chr13 2828030 2828253 -99044916 + AluJo SINE Alu 79 310 -2 287 296 139 12 chr13 2828300 2828472 -99044697 - L2 LINE L2 -213 3059 2866 713 150 8 24 chr13 2828541 2828668 -99044501 + MER45R DNA AcHobo 1457 1581 0 1971 93 12 99 chr13 2828808 2829140 -99044029 + AluSg SINE Alu 1 303 -7 2340 89 10 0 chr13 2829190 2829492 -99043677 - AluSp SINE Alu -8 305 1 2352 88 0 10 chr13 2829909 2830214 -99042955 + AluSq SINE Alu 1 302 -11 2144 136 0 0 chr13 2830246 2830547 -99042622 + AluSx SINE Alu 1 301 -11 2208 128 0 0 chr13 2830700 2830997 -99042172 + AluSx SINE Alu 1 297 -15 390 258 132 33 chr13 2831178 2831391 -99041778 - L1ME LINE L1 -297 5824 5591 340 320 98 40 chr13 2831640 2832112 -99041057 - L1ME LINE L1 -1539 4607 4109 342 230 30 22 chr13 2832185 2832320 -99040849 - L1ME LINE L1 -2146 4000 3865 237 323 0 50 chr13 2832745 2832844 -99040325 + L2 LINE L2 2981 3074 -198 209 284 0 118 chr13 2833037 2833092 -99040077 + MIR SINE MIR 76 110 -152 1947 121 25 18 chr13 2833092 2833402 -99039767 - AluSx SINE Alu 0 312 1 209 284 0 118 chr13 2833402 2833472 -99039697 + MIR SINE MIR 110 187 -75 2095 126 17 3 chr13 2833631 2833932 -99039237 + AluSq SINE Alu 1 305 -8 295 262 0 0 chr13 2834181 2834242 -99038927 - MER2 DNA MER2_type -212 133 73 478 140 68 33 chr13 2834245 2834453 -99038716 + AluJo SINE Alu 3 290 -22 323 221 0 93 chr13 2834467 2834553 -99038616 - MER2 DNA MER2_type -267 78 1 410 212 17 51 chr13 2834730 2834848 -99038321 + MIR SINE MIR 35 148 -60 589 233 69 80 chr13 2835308 2835455 -99037714 + MIR SINE MIR 2 146 -116 2309 83 10 0 chr13 2835455 2835744 -99037425 + AluSg SINE Alu 2 293 -17 589 233 69 80 chr13 2835744 2835858 -99037311 + MIR SINE MIR 146 260 -2 2110 130 3 0 chr13 2835962 2836261 -99036908 - AluSx SINE Alu -12 300 1 246 277 18 62 chr13 2836355 2836473 -99036696 + MIR SINE MIR 2 110 -104 27 62 0 0 chr13 2838278 2838326 -99034843 + GC_rich Low_complexity Low_complexity 1 48 0 2491 77 0 0 chr13 2838695 2839006 -99034163 - AluSx SINE Alu -1 311 1 1622 156 33 10 chr13 2839230 2839531 -99033638 + AluJb SINE Alu 1 308 -4 193 313 24 24 chr13 2839559 2839642 -99033527 - L3 LINE CR1 -22 1555 1473 180 247 56 79 chr13 2839707 2839796 -99033373 - L3 LINE CR1 -211 1366 1280 462 18 0 0 chr13 2839894 2839949 -99033220 + (TG)n Simple_repeat Simple_repeat 2 56 0 2110 115 4 0 chr13 2839950 2840228 -99032941 - AluSx SINE Alu -33 279 1 271 224 0 0 chr13 2840413 2840462 -99032707 + L2 LINE L2 3210 3258 -14 2216 94 3 39 chr13 2840680 2840988 -99032181 + AluSp SINE Alu 1 297 -16 2133 122 26 0 chr13 2840988 2841291 -99031878 + AluSx SINE Alu 1 311 -1 1888 150 0 23 chr13 2841296 2841602 -99031567 + AluJo SINE Alu 5 303 -9 2205 122 7 0 chr13 2841604 2841900 -99031269 + AluSx SINE Alu 1 298 -14 2236 96 36 0 chr13 2841900 2842201 -99030968 + AluSx SINE Alu 1 312 0 180 303 30 45 chr13 2842344 2842410 -99030759 - L3 LINE CR1 -5 1572 1508 1713 162 9 62 chr13 2842499 2842671 -99030498 - AluSx SINE Alu -8 304 124 186 43 0 0 chr13 2842671 2842694 -99030475 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2091 92 3 11 chr13 2842694 2842978 -99030191 - AluSc SINE Alu -27 282 1 2372 85 0 0 chr13 2842987 2843300 -99029869 - AluSq SINE Alu 0 313 1 1713 162 9 62 chr13 2843300 2843436 -99029733 - AluSx SINE Alu -195 117 1 217 224 64 66 chr13 2843928 2844034 -99029135 - MIR SINE MIR -5 203 85 193 336 44 44 chr13 2844058 2844195 -99028974 + MIR SINE MIR 14 150 -112 998 270 145 58 chr13 2844468 2845135 -99028034 + MER21B LTR ERV1 6 730 -133 442 223 9 9 chr13 2845281 2845393 -99027776 - MIR SINE MIR -56 206 95 2448 79 3 0 chr13 2845415 2845719 -99027450 - AluY SINE Alu -4 307 3 396 226 28 0 chr13 2845731 2845837 -99027332 + L1 LINE L1 2768 2876 -3270 264 172 0 0 chr13 2845842 2845900 -99027269 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 2845915 2846222 -99026947 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 2846264 2846407 -99026762 + L1 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 2846414 2846842 -99026327 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 2846856 2847101 -99026068 + L1 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 2847111 2847398 -99025771 + AluSg SINE Alu 5 306 -4 2019 164 0 0 chr13 2847409 2847720 -99025449 + AluJb SINE Alu 2 312 0 2361 81 0 3 chr13 2847720 2848017 -99025152 + AluY SINE Alu 1 296 -15 29 0 0 0 chr13 2848017 2848046 -99025123 + AT_rich Low_complexity Low_complexity 1 29 0 460 102 0 153 chr13 2848046 2848144 -99025025 + AluSq SINE Alu 121 203 -110 993 74 0 0 chr13 2848179 2848301 -99024868 + AluSg/x SINE Alu 181 302 -8 583 214 15 30 chr13 2848336 2848467 -99024702 + FLAM_A SINE Alu 1 129 -4 609 154 164 34 chr13 2848469 2848513 -99024656 + Charlie1 DNA MER1_type 2478 2515 -246 2260 103 0 13 chr13 2848513 2848823 -99024346 - AluSq SINE Alu -7 306 1 609 154 164 34 chr13 2848823 2848986 -99024183 + Charlie1 DNA MER1_type 2515 2712 -49 2466 86 0 0 chr13 2849097 2849398 -99023771 - AluSx SINE Alu -11 301 1 2020 130 13 0 chr13 2849554 2849854 -99023315 + AluSq SINE Alu 1 304 -9 803 111 19 0 chr13 2850147 2850255 -99022914 + AluSq/x SINE Alu 1 110 -203 2208 110 0 0 chr13 2850280 2850605 -99022564 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 2850763 2850790 -99022379 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1078 139 48 0 chr13 2851882 2852047 -99021122 - AluSx SINE Alu -11 299 127 1016 108 0 0 chr13 2852112 2852242 -99020927 - AluSx SINE Alu -183 130 1 254 176 39 0 chr13 2852633 2852684 -99020485 + Charlie1 DNA MER1_type 2709 2761 0 2041 146 0 0 chr13 2853064 2853358 -99019811 + AluJb SINE Alu 9 302 -10 2486 78 7 0 chr13 2853519 2853828 -99019341 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 2854031 2854059 -99019110 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 401 100 0 17 chr13 2854776 2854836 -99018333 - AluSc SINE Alu -178 131 73 264 172 0 0 chr13 2855021 2855079 -99018090 + T-rich Low_complexity Low_complexity 1 58 0 2397 91 0 10 chr13 2855093 2855400 -99017769 + AluSx SINE Alu 1 304 -8 739 154 7 0 chr13 2855442 2855585 -99017584 + L1MB2 LINE L1 2865 3008 -3138 2734 124 12 23 chr13 2855592 2856020 -99017149 + LTR3 LTR ERVK 1 423 -9 763 208 65 4 chr13 2856034 2856279 -99016890 + L1MB2 LINE L1 3009 3268 -2878 1804 136 63 11 chr13 2856289 2856576 -99016593 + AluSg SINE Alu 5 306 -4 1909 172 0 0 chr13 2856587 2856884 -99016285 + AluJb SINE Alu 2 298 -14 2274 105 0 3 chr13 2856884 2857188 -99015981 + AluY SINE Alu 1 303 -8 2369 106 0 0 chr13 2857193 2857505 -99015664 + AluSx SINE Alu 1 312 0 7099 185 54 44 chr13 2857532 2858149 -99015020 + L1MB2 LINE L1 3562 4172 -2010 2388 99 0 0 chr13 2858149 2858443 -99014726 - AluSq SINE Alu -19 294 1 7099 185 54 44 chr13 2858443 2858648 -99014521 + L1MB2 LINE L1 4172 4374 -1808 2492 33 40 10 chr13 2858648 2858949 -99014220 + AluY SINE Alu 1 310 -1 7099 185 54 44 chr13 2858949 2859362 -99013807 + L1MB2 LINE L1 4374 4782 -1400 2424 47 7 13 chr13 2859362 2859663 -99013506 - AluY SINE Alu -11 300 2 7099 185 54 44 chr13 2859663 2860137 -99013032 + L1MB2 LINE L1 4782 5250 -932 2026 126 0 46 chr13 2860137 2860439 -99012730 + AluJb SINE Alu 1 288 -24 1441 153 117 36 chr13 2860449 2860723 -99012446 + AluSg SINE Alu 1 296 -14 7099 185 54 44 chr13 2860723 2860837 -99012332 + L1MB2 LINE L1 5258 5437 -745 279 241 0 0 chr13 2860838 2860896 -99012273 + AluYa5 SINE Alu 135 192 -109 27 0 0 0 chr13 2860911 2860938 -99012231 + AT_rich Low_complexity Low_complexity 1 27 0 3226 168 66 45 chr13 2860939 2861011 -99012158 + L1MB2 LINE L1 5429 5498 -673 2141 118 0 32 chr13 2861011 2861325 -99011844 + AluSx SINE Alu 1 304 -8 3226 168 66 45 chr13 2861325 2861836 -99011333 + L1MB2 LINE L1 5498 6031 -140 2284 96 0 19 chr13 2861836 2862149 -99011020 - AluSg SINE Alu -3 307 1 3226 168 66 45 chr13 2862149 2862249 -99010920 + L1MB2 LINE L1 6031 6127 -44 2796 167 44 175 chr13 2862401 2862471 -99010698 + L1MB2 LINE L1 5258 5336 -835 2013 126 0 46 chr13 2862471 2862773 -99010396 + AluJb SINE Alu 1 288 -24 1458 150 117 36 chr13 2862783 2863057 -99010112 + AluSg SINE Alu 1 296 -14 2796 167 44 175 chr13 2863057 2863172 -99009997 + L1MB2 LINE L1 5346 5474 -697 279 241 0 0 chr13 2863172 2863230 -99009939 + AluYa5 SINE Alu 135 192 -109 2796 167 44 175 chr13 2863230 2863345 -99009824 + L1MB2 LINE L1 5474 5602 -569 2141 118 0 32 chr13 2863345 2863659 -99009510 + AluSx SINE Alu 1 304 -8 2796 167 44 175 chr13 2863659 2864170 -99008999 + L1MB2 LINE L1 5602 6037 -134 2155 115 6 19 chr13 2864170 2864483 -99008686 - AluSx SINE Alu -3 309 1 1232 190 28 120 chr13 2865279 2865625 -99007544 - Charlie1 DNA MER1_type 0 2761 2466 2165 115 0 7 chr13 2865625 2865929 -99007240 - AluSx SINE Alu -10 302 1 1232 190 28 120 chr13 2865929 2866039 -99007130 - Charlie1 DNA MER1_type -295 2466 2347 244 167 0 0 chr13 2866051 2866087 -99007082 - Charlie1 DNA MER1_type -2725 36 1 1893 111 0 25 chr13 2866452 2866732 -99006437 + AluSx SINE Alu 40 311 -1 2067 99 0 3 chr13 2866804 2867097 -99006072 + AluSg1 SINE Alu 1 292 -17 194 331 137 32 chr13 2867345 2867469 -99005700 + MIR3 SINE MIR 33 169 -39 252 73 18 109 chr13 2867550 2867605 -99005564 - LTR67 LTR ERVL -4 553 504 463 287 68 94 chr13 2867764 2868029 -99005140 + L2 LINE L2 3010 3267 -5 205 245 0 0 chr13 2868056 2868105 -99005064 + L2 LINE L2 3256 3304 -9 2185 77 0 7 chr13 2868168 2868466 -99004703 + AluY SINE Alu 1 296 -15 2223 183 25 27 chr13 2869063 2869407 -99003762 - L1MB3 LINE L1 -2 6181 5838 1894 121 37 0 chr13 2869407 2869705 -99003464 - AluSx SINE Alu -2 310 2 2034 118 0 29 chr13 2869712 2870027 -99003142 - AluSg SINE Alu -4 306 1 2223 183 25 27 chr13 2870027 2870161 -99003008 - L1MB3 LINE L1 -351 5832 5696 222 326 31 0 chr13 2870217 2870315 -99002854 + MIR SINE MIR 106 206 -56 306 366 6 0 chr13 2871087 2871251 -99001918 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2193 109 0 10 chr13 2871548 2871861 -99001308 - AluY SINE Alu 0 311 2 1878 105 7 56 chr13 2872255 2872560 -99000609 - AluSq SINE Alu -23 290 1 275 0 0 28 chr13 2872622 2872658 -99000511 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2305 49 3 3 chr13 2872669 2872953 -99000216 - AluY SINE Alu -27 284 1 1074 68 0 0 chr13 2872954 2873087 -99000082 - AluYb8 SINE Alu -185 133 1 2477 115 37 91 chr13 2873087 2873573 -98999596 - L1MB2 LINE L1 -41 6130 5671 322 257 57 57 chr13 2873581 2873721 -98999448 - MIR3 SINE MIR 0 208 69 2198 81 0 14 chr13 2873744 2874039 -98999130 - AluSg SINE Alu -19 291 1 511 295 13 13 chr13 2874039 2874195 -98998974 - MIR SINE MIR -4 258 103 382 79 32 0 chr13 2874197 2874260 -98998909 + (TA)n Simple_repeat Simple_repeat 1 65 0 1918 129 4 0 chr13 2874262 2874541 -98998628 - AluSg SINE Alu -30 280 1 353 318 85 0 chr13 2874617 2874746 -98998423 - L2 LINE L2 0 3272 3133 252 273 117 23 chr13 2875083 2875140 -98998029 - MIR SINE MIR -44 218 168 357 24 0 0 chr13 2875140 2875182 -98997987 + (TC)n Simple_repeat Simple_repeat 1 42 0 1241 158 17 70 chr13 2875183 2875481 -98997688 - AluJo SINE Alu -30 282 1 252 273 117 23 chr13 2875481 2875549 -98997620 - MIR SINE MIR -93 169 79 2118 102 0 20 chr13 2876595 2876898 -98996271 - AluSx SINE Alu -15 297 1 643 236 85 43 chr13 2877142 2877280 -98995889 + L1M4 LINE L1 4995 5126 -1020 2257 85 7 3 chr13 2877280 2877587 -98995582 + AluSc SINE Alu 1 308 -1 643 236 85 43 chr13 2877587 2877706 -98995463 + L1M4 LINE L1 5126 5263 -883 396 254 0 87 chr13 2877711 2877797 -98995372 - HAL1 LINE L1 -180 2327 2264 1452 166 0 67 chr13 2877797 2878110 -98995059 - AluJb SINE Alu -20 292 1 396 254 0 87 chr13 2878110 2878208 -98994961 - HAL1 LINE L1 -243 2264 2159 266 229 110 37 chr13 2878283 2878392 -98994777 - HAL1 LINE L1 -662 1845 1729 1935 102 4 0 chr13 2878413 2878678 -98994491 - AluSp SINE Alu -1 312 47 598 111 56 0 chr13 2878681 2878771 -98994398 + AluSg/x SINE Alu 201 295 -14 984 106 8 0 chr13 2879020 2879152 -98994017 + FLAM_C SINE Alu 1 133 0 751 217 166 5 chr13 2879226 2879443 -98993726 - HAL1 LINE L1 -770 1737 1486 770 104 0 9 chr13 2879443 2879558 -98993611 + AluSg/x SINE Alu 197 310 0 1311 142 13 13 chr13 2879560 2879872 -98993297 + L1MB8 LINE L1 5190 5499 -675 1099 101 0 0 chr13 2879875 2880012 -98993157 + AluSq/x SINE Alu 1 140 -172 2119 126 0 3 chr13 2880012 2880322 -98992847 + AluSx SINE Alu 1 309 -3 1099 101 0 0 chr13 2880322 2880333 -98992836 + AluSq/x SINE Alu 139 149 -163 2424 128 63 101 chr13 2880333 2880762 -98992407 + L1MB8 LINE L1 5505 5912 -266 2060 120 0 0 chr13 2880762 2881062 -98992107 + AluSx SINE Alu 1 300 -12 2424 128 63 101 chr13 2881062 2881156 -98992013 + L1MB8 LINE L1 5912 6008 -170 960 110 0 0 chr13 2881173 2881309 -98991860 - AluSg/x SINE Alu -13 297 162 417 107 0 0 chr13 2881413 2881469 -98991700 - AluSq/x SINE Alu -179 133 78 1262 155 5 9 chr13 2881469 2881682 -98991487 - AluSx SINE Alu -100 212 1 1302 151 14 18 chr13 2881685 2881957 -98991212 - L1M4 LINE L1 -675 5499 5235 2015 105 16 7 chr13 2881984 2882290 -98990879 + AluY SINE Alu 1 309 -2 573 170 64 7 chr13 2882319 2882460 -98990709 + L1MB8 LINE L1 6025 6173 -5 1091 126 6 6 chr13 2882463 2882474 -98990695 + AluSg/x SINE Alu 121 131 -179 2218 93 3 3 chr13 2882474 2882776 -98990393 + AluSq SINE Alu 1 302 -11 1091 126 6 6 chr13 2882776 2882939 -98990230 + AluSg/x SINE Alu 130 295 -15 1374 253 107 65 chr13 2882941 2883230 -98989939 + HAL1 LINE L1 828 1103 -1404 2397 61 3 6 chr13 2883230 2883542 -98989627 + AluY SINE Alu 1 311 0 1374 253 107 65 chr13 2883542 2884057 -98989112 + HAL1 LINE L1 1103 1666 -841 329 278 11 0 chr13 2884114 2884204 -98988965 + HAL1 LINE L1 1802 1892 -615 260 33 0 0 chr13 2884384 2884414 -98988755 - LTR6A LTR ERV1 -462 102 73 292 243 149 68 chr13 2885342 2885373 -98987796 + HAL1 LINE L1 2012 2039 -468 1968 110 3 17 chr13 2885373 2885674 -98987495 + AluSp SINE Alu 1 297 -16 292 243 149 68 chr13 2885674 2885875 -98987294 + HAL1 LINE L1 2039 2222 -285 2496 55 0 3 chr13 2885875 2886185 -98986984 + AluY SINE Alu 1 309 -2 292 243 149 68 chr13 2886185 2886346 -98986823 + HAL1 LINE L1 2222 2438 -69 32 26 0 0 chr13 2886373 2886412 -98986757 + AT_rich Low_complexity Low_complexity 1 39 0 188 270 162 40 chr13 2886626 2886645 -98986524 - MIR SINE MIR -107 101 86 1269 139 16 84 chr13 2886645 2886858 -98986311 + MER46A DNA MER2_type 3 198 -2533 1834 133 19 16 chr13 2886858 2887167 -98986002 - AluSx SINE Alu -2 310 1 1269 139 16 84 chr13 2887167 2887204 -98985965 + MER46A DNA MER2_type 198 236 0 188 270 162 40 chr13 2887204 2887258 -98985911 - MIR SINE MIR -122 86 19 488 252 44 7 chr13 2887463 2887598 -98985571 + MER117 DNA MER1_type 1 140 -57 1290 196 113 48 chr13 2887674 2888010 -98985159 + MLT1A1 LTR MaLR 8 365 0 576 153 23 92 chr13 2888310 2888414 -98984755 + MER3 DNA MER1_type 40 150 -12 180 0 0 0 chr13 2888414 2888434 -98984735 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2014 104 0 10 chr13 2888434 2888722 -98984447 - AluSg SINE Alu -25 285 1 1900 134 30 0 chr13 2888722 2889020 -98984149 - AluSx SINE Alu -5 307 1 576 153 23 92 chr13 2889020 2889044 -98984125 + MER3 DNA MER1_type 147 161 -48 2781 239 158 42 chr13 2889074 2890191 -98982978 + L1MDa LINE L1 19 1320 -5220 780 102 0 70 chr13 2890192 2890320 -98982849 - FRAM SINE Alu -4 172 54 1361 191 32 27 chr13 2890392 2890700 -98982469 + LTR38 LTR ERV1 127 451 -159 335 262 39 0 chr13 2890715 2890818 -98982351 + MER87 LTR ERV1 395 501 -40 1871 142 23 3 chr13 2890818 2891120 -98982049 - AluSx SINE Alu -4 308 1 1464 146 18 18 chr13 2891263 2891537 -98981632 + AluSp SINE Alu 22 295 -18 3187 178 52 50 chr13 2891537 2892408 -98980761 + L1MDa LINE L1 1302 2177 -4363 393 227 52 0 chr13 2892477 2892574 -98980595 + U13 snRNA snRNA 1 102 -2 1283 151 19 31 chr13 2892772 2892857 -98980312 + AluJo SINE Alu 57 141 -171 288 0 0 0 chr13 2892857 2892889 -98980280 + (TA)n Simple_repeat Simple_repeat 2 33 0 1283 151 19 31 chr13 2892889 2893061 -98980108 + AluJo SINE Alu 141 311 -1 2082 100 0 13 chr13 2893120 2893419 -98979750 - AluSq SINE Alu -18 295 1 296 163 213 31 chr13 2893422 2893582 -98979587 + Charlie1 DNA MER1_type 2524 2712 -49 2335 86 0 0 chr13 2893693 2893994 -98979175 - AluSx SINE Alu -11 301 1 1905 130 13 0 chr13 2894150 2894450 -98978719 + AluSq SINE Alu 1 304 -9 779 129 0 17 chr13 2894740 2894856 -98978313 + AluSq/x SINE Alu 2 115 -198 2083 110 0 0 chr13 2894876 2895201 -98977968 + AluSg SINE Alu 1 325 0 243 0 0 0 chr13 2895359 2895386 -98977783 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1017 139 48 0 chr13 2896478 2896643 -98976526 - AluSx SINE Alu -11 299 127 958 113 0 0 chr13 2896705 2896838 -98976331 - AluSx SINE Alu -180 133 1 253 176 39 0 chr13 2897229 2897280 -98975889 + Charlie1 DNA MER1_type 2709 2761 0 1927 146 0 0 chr13 2897660 2897954 -98975215 + AluJb SINE Alu 9 302 -10 2353 78 7 0 chr13 2898115 2898424 -98974745 + AluY SINE Alu 1 311 0 198 71 0 0 chr13 2898627 2898655 -98974514 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 265 100 0 0 chr13 2899372 2899412 -98973757 - AluSq/x SINE Alu -169 133 94 277 209 11 128 chr13 2899518 2899588 -98973581 - LTR9 LTR ERV1 -174 438 388 2198 87 0 0 chr13 2899588 2899875 -98973294 + AluSg SINE Alu 1 287 -23 277 209 11 128 chr13 2899875 2899913 -98973256 - LTR9 LTR ERV1 -224 388 347 1727 155 11 90 chr13 2899950 2900317 -98972852 - LTR9 LTR ERV1 -274 338 1 1374 185 62 14 chr13 2900440 2900716 -98972453 + AluJo SINE Alu 1 289 -23 2061 80 42 11 chr13 2900725 2901012 -98972157 + AluSp SINE Alu 1 296 -17 1536 139 25 86 chr13 2901034 2901220 -98971949 - AluJb SINE Alu -8 304 145 1889 141 0 7 chr13 2901220 2901518 -98971651 - AluSc SINE Alu -13 296 1 1536 139 25 86 chr13 2901518 2901655 -98971514 - AluJb SINE Alu -167 145 1 259 125 152 18 chr13 2901982 2902094 -98971075 + (TTTAA)n Simple_repeat Simple_repeat 1 127 0 1865 146 0 14 chr13 2902266 2902553 -98970616 - AluJo SINE Alu -29 283 1 2098 102 0 0 chr13 2902606 2902919 -98970250 - AluSx SINE Alu 0 313 1 2012 131 0 0 chr13 2902923 2903213 -98969956 - AluSx SINE Alu -18 294 5 307 221 0 29 chr13 2903381 2903449 -98969720 + L1M LINE L1 5353 5418 -703 4861 74 19 50 chr13 2903489 2903897 -98969272 - L1PA11 LINE L1 -2 6172 5794 2191 101 3 19 chr13 2903897 2904215 -98968954 - AluSp SINE Alu 0 313 1 4861 74 19 50 chr13 2904215 2904508 -98968661 - L1PA11 LINE L1 -380 5794 5493 2025 137 0 13 chr13 2904508 2904823 -98968346 - AluSx SINE Alu -1 311 1 2159 123 0 0 chr13 2904824 2905133 -98968036 - AluSq SINE Alu -4 309 1 2002 104 14 0 chr13 2905136 2905435 -98967734 - AluSx SINE Alu 0 303 1 990 169 0 0 chr13 2905453 2905619 -98967550 + FRAM SINE Alu 1 158 -18 2024 145 0 0 chr13 2905647 2905958 -98967211 + AluSx SINE Alu 1 311 -1 627 262 79 30 chr13 2905998 2906200 -98966969 + MIR SINE MIR 49 260 -2 2169 73 0 0 chr13 2906264 2906607 -98966562 - AluY SINE Alu 0 352 10 1931 103 0 0 chr13 2906627 2906899 -98966270 - AluSq SINE Alu -3 310 39 1911 121 0 4 chr13 2906899 2907178 -98965991 - AluSx SINE Alu -33 279 1 21 0 0 0 chr13 2907178 2907199 -98965970 + AT_rich Low_complexity Low_complexity 1 21 0 1964 186 91 59 chr13 2907411 2907573 -98965596 - MER119 DNA MER1_type -3 580 425 2328 71 0 10 chr13 2907573 2907882 -98965287 - AluSg SINE Alu -4 306 1 1964 186 91 59 chr13 2907882 2907926 -98965243 - MER119 DNA MER1_type -158 425 384 2210 95 0 3 chr13 2907926 2908220 -98964949 - AluSc SINE Alu -16 293 1 1964 186 91 59 chr13 2908220 2908231 -98964938 - MER119 DNA MER1_type -199 384 375 2045 105 20 13 chr13 2908231 2908535 -98964634 - AluSx SINE Alu -4 308 3 1964 186 91 59 chr13 2908535 2908873 -98964296 - MER119 DNA MER1_type -208 375 5 708 274 10 5 chr13 2909219 2909416 -98963753 + L1PB4 LINE L1 5956 6153 -3 1467 188 0 7 chr13 2909508 2909780 -98963389 + AluJo SINE Alu 4 273 -39 2293 84 0 3 chr13 2909783 2910091 -98963078 + AluY SINE Alu 1 307 -4 912 200 0 0 chr13 2910091 2910266 -98962903 + AluJo/FRAM SINE Alu 135 309 -3 2046 104 0 27 chr13 2910266 2910563 -98962606 + AluSx SINE Alu 1 289 -23 239 189 57 0 chr13 2910597 2910650 -98962519 - MER69 DNA AcHobo -1170 56 1 338 244 28 82 chr13 2911252 2911571 -98961598 + L1ME4a LINE L1 5565 5866 -255 2205 65 41 3 chr13 2911606 2911896 -98961273 - AluY SINE Alu -8 303 3 30 0 0 0 chr13 2911898 2911928 -98961241 + AT_rich Low_complexity Low_complexity 1 30 0 1928 136 0 16 chr13 2911928 2912237 -98960932 - AluJb SINE Alu -3 309 6 350 252 59 25 chr13 2912271 2912390 -98960779 + MIR SINE MIR 51 173 -89 308 200 25 12 chr13 2912383 2912463 -98960706 + MIR SINE MIR 48 128 -134 * 2007 99 20 17 chr13 2912756 2913049 -98960120 + AluSx SINE Alu 1 294 -18 234 203 85 17 chr13 2914383 2914442 -98958727 - MIR3 SINE MIR -8 200 138 309 90 0 9 chr13 2914531 2914741 -98958428 + AluSc SINE Alu 1 293 -6 433 284 66 51 chr13 2914743 2915137 -98958032 - L1ME4a LINE L1 -73 6048 5649 2086 105 0 3 chr13 2915158 2915480 -98957689 + AluSx SINE Alu 1 321 0 2024 117 0 3 chr13 2915566 2915857 -98957312 - AluSg1 SINE Alu -19 290 1 1217 193 28 120 chr13 2916653 2916999 -98956170 - Charlie1 DNA MER1_type 0 2761 2466 2043 115 0 7 chr13 2916999 2917303 -98955866 - AluSx SINE Alu -10 302 1 1217 193 28 120 chr13 2917303 2917413 -98955756 - Charlie1 DNA MER1_type -295 2466 2347 244 167 0 0 chr13 2917425 2917461 -98955708 - Charlie1 DNA MER1_type -2725 36 1 1775 128 0 0 chr13 2917826 2918099 -98955070 + AluSx SINE Alu 40 312 0 2067 99 0 3 chr13 2918176 2918469 -98954700 + AluSg1 SINE Alu 1 292 -17 194 331 137 32 chr13 2918717 2918841 -98954328 + MIR3 SINE MIR 33 169 -39 252 73 18 109 chr13 2918922 2918977 -98954192 - LTR67 LTR ERVL -4 553 504 463 287 68 94 chr13 2919136 2919401 -98953768 + L2 LINE L2 3010 3267 -5 205 245 0 0 chr13 2919428 2919477 -98953692 + L2 LINE L2 3256 3304 -9 2185 77 0 7 chr13 2919540 2919838 -98953331 + AluY SINE Alu 1 296 -15 2223 183 25 27 chr13 2920435 2920779 -98952390 - L1MB3 LINE L1 -2 6181 5838 1894 121 37 0 chr13 2920779 2921077 -98952092 - AluSx SINE Alu -2 310 2 2034 118 0 29 chr13 2921084 2921399 -98951770 - AluSg SINE Alu -4 306 1 2223 183 25 27 chr13 2921399 2921533 -98951636 - L1MB3 LINE L1 -351 5832 5696 222 326 31 0 chr13 2921589 2921687 -98951482 + MIR SINE MIR 106 206 -56 306 366 6 0 chr13 2922459 2922623 -98950546 + (CCA)n Simple_repeat Simple_repeat 1 165 0 2193 109 0 10 chr13 2922920 2923233 -98949936 - AluY SINE Alu 0 311 2 1878 105 7 56 chr13 2923627 2923932 -98949237 - AluSq SINE Alu -23 290 1 275 0 0 28 chr13 2923994 2924030 -98949139 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2305 49 3 3 chr13 2924041 2924325 -98948844 - AluY SINE Alu -27 284 1 1074 68 0 0 chr13 2924326 2924459 -98948710 - AluYb8 SINE Alu -185 133 1 2477 115 37 91 chr13 2924459 2924945 -98948224 - L1MB2 LINE L1 -41 6130 5671 322 257 57 57 chr13 2924953 2925093 -98948076 - MIR3 SINE MIR 0 208 69 2198 81 0 14 chr13 2925116 2925411 -98947758 - AluSg SINE Alu -19 291 1 511 295 13 13 chr13 2925411 2925567 -98947602 - MIR SINE MIR -4 258 103 331 73 36 0 chr13 2925571 2925626 -98947543 + (TA)n Simple_repeat Simple_repeat 2 58 0 1931 125 4 0 chr13 2925628 2925907 -98947262 - AluSg SINE Alu -30 280 1 353 318 85 0 chr13 2925983 2926112 -98947057 - L2 LINE L2 0 3272 3133 238 281 117 23 chr13 2926449 2926506 -98946663 - MIR SINE MIR -44 218 168 357 24 0 0 chr13 2926506 2926548 -98946621 + (TC)n Simple_repeat Simple_repeat 1 42 0 1249 158 17 67 chr13 2926549 2926846 -98946323 - AluJo SINE Alu -30 282 1 238 281 117 23 chr13 2926846 2926914 -98946255 - MIR SINE MIR -93 169 79 2150 108 0 19 chr13 2927959 2928274 -98944895 - AluSx SINE Alu -3 309 1 643 236 85 43 chr13 2928518 2928656 -98944513 + L1M4 LINE L1 4995 5126 -1020 2257 85 7 3 chr13 2928656 2928963 -98944206 + AluSc SINE Alu 1 308 -1 643 236 85 43 chr13 2928963 2929082 -98944087 + L1M4 LINE L1 5126 5263 -883 396 254 0 87 chr13 2929087 2929173 -98943996 - HAL1 LINE L1 -180 2327 2264 1440 165 0 73 chr13 2929173 2929488 -98943681 - AluJb SINE Alu -20 292 1 396 254 0 87 chr13 2929488 2929586 -98943583 - HAL1 LINE L1 -243 2264 2159 266 229 110 37 chr13 2929661 2929770 -98943399 - HAL1 LINE L1 -662 1845 1729 1935 102 4 0 chr13 2929791 2930056 -98943113 - AluSp SINE Alu -1 312 47 598 111 56 0 chr13 2930059 2930149 -98943020 + AluSg/x SINE Alu 204 298 -14 984 106 8 0 chr13 2930398 2930530 -98942639 + FLAM_C SINE Alu 1 133 0 751 217 166 5 chr13 2930604 2930821 -98942348 - HAL1 LINE L1 -770 1737 1486 770 104 0 9 chr13 2930821 2930936 -98942233 + AluSg/x SINE Alu 199 312 0 501 146 12 12 chr13 2930961 2931075 -98942094 + L1MC4a LINE L1 5211 5324 -830 2112 113 3 0 chr13 2931260 2931553 -98941616 - AluSx SINE Alu -18 294 1 838 154 0 0 chr13 2931553 2931689 -98941480 - AluJb SINE Alu -176 136 1 1651 188 122 26 chr13 2931691 2931733 -98941436 - LTR40c LTR ERVL -19 446 409 2317 114 21 15 chr13 2931733 2932067 -98941102 - MER1B DNA MER1_type -1 336 1 1651 188 122 26 chr13 2932067 2932401 -98940768 - LTR40c LTR ERVL -56 409 34 994 272 101 8 chr13 2932432 2932807 -98940362 + L1MC4a LINE L1 5569 5978 -1830 2169 113 7 0 chr13 2932930 2933232 -98939937 - AluSx SINE Alu -8 304 1 1831 122 14 10 chr13 2933336 2933624 -98939545 - AluSq SINE Alu -24 289 1 1958 114 0 30 chr13 2933626 2933924 -98939245 - AluSx SINE Alu -23 289 1 189 0 0 0 chr13 2934787 2934808 -98938361 + (TG)n Simple_repeat Simple_repeat 2 22 0 1911 84 0 0 chr13 2936950 2937201 -98935968 - AluSx SINE Alu -6 306 56 1523 184 67 31 chr13 2937598 2938386 -98934783 + L1MB4 LINE L1 5017 5896 -284 1840 134 38 0 chr13 2938386 2938676 -98934493 + AluSq SINE Alu 1 301 -12 1523 184 67 31 chr13 2938676 2938938 -98934231 + L1MB4 LINE L1 5896 6147 -33 288 75 19 0 chr13 2939011 2939064 -98934105 + L1MB4 LINE L1 6127 6180 0 2126 106 0 3 chr13 2939187 2939488 -98933681 - AluSg SINE Alu -10 300 1 1908 156 45 66 chr13 2939847 2940025 -98933144 + Tigger2a DNA MER2_type 1 181 -2527 1965 139 3 3 chr13 2940025 2940335 -98932834 - AluSx SINE Alu -2 310 1 1908 156 45 66 chr13 2940335 2940598 -98932571 + Tigger2a DNA MER2_type 181 433 -1 29 60 0 0 chr13 2940787 2940837 -98932332 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr13 2941277 2941334 -98931835 + AT_rich Low_complexity Low_complexity 1 57 0 281 284 37 12 chr13 2941989 2942070 -98931099 - MIR SINE MIR -149 113 31 397 327 80 34 chr13 2943303 2943566 -98929603 + L3b LINE CR1 1111 1385 -198 2194 99 3 0 chr13 2943580 2943884 -98929285 - AluSp SINE Alu -8 305 1 2351 72 3 3 chr13 2943983 2944289 -98928880 + AluSp SINE Alu 1 306 -7 2008 99 0 11 chr13 2945228 2945510 -98927659 - AluSx SINE Alu -33 279 1 372 174 14 0 chr13 2945771 2945840 -98927329 - L1 LINE L1 -1165 4981 4912 4242 144 61 29 chr13 2945846 2946733 -98926436 + L1MA4A LINE L1 4377 5235 -1068 2099 125 3 0 chr13 2946733 2947037 -98926132 + AluSx SINE Alu 1 305 -7 2216 95 3 0 chr13 2947040 2947336 -98925833 + AluSp SINE Alu 1 297 -16 4242 144 61 29 chr13 2947336 2948187 -98924982 + L1MA4A LINE L1 5236 6302 -1 2043 117 0 13 chr13 2948188 2948504 -98924665 + AluSx SINE Alu 1 312 0 1163 123 0 0 chr13 2948879 2949049 -98924120 - AluSc SINE Alu 0 309 140 7491 63 150 4 chr13 2949050 2950116 -98923053 + MER11B LTR ERVK 1 1222 -14 1158 76 0 0 chr13 2950157 2950301 -98922868 - AluSc SINE Alu -165 144 1 1072 157 46 28 chr13 2950679 2950895 -98922274 - AluJb SINE Alu -26 286 67 1329 118 0 0 chr13 2950895 2951081 -98922088 + AluY SINE Alu 1 186 -125 408 208 13 0 chr13 2951110 2951187 -98921982 - AluJb SINE Alu -233 79 2 23 0 0 0 chr13 2951311 2951334 -98921835 + AT_rich Low_complexity Low_complexity 1 23 0 2754 153 50 21 chr13 2951749 2952284 -98920885 + L1MB4 LINE L1 5629 6179 -1 1487 160 14 34 chr13 2952809 2953103 -98920066 + AluJb SINE Alu 1 288 -24 1787 146 10 3 chr13 2953187 2953489 -98919680 - AluSx SINE Alu -8 304 1 1458 206 0 13 chr13 2953489 2953795 -98919374 - AluJo SINE Alu -8 304 3 1545 76 0 19 chr13 2953830 2954041 -98919128 + AluY SINE Alu 11 217 -94 769 185 14 0 chr13 2954144 2954290 -98918879 + AluSg/x SINE Alu 139 286 -26 585 186 16 16 chr13 2954287 2954411 -98918758 + AluSg/x SINE Alu 183 306 -4 * 1313 151 19 55 chr13 2954415 2954686 -98918483 - AluSx SINE Alu -21 291 31 1992 138 57 131 chr13 2954689 2955204 -98917965 - LTR12 LTR ERV1 -237 2201 55 232 176 39 20 chr13 2955204 2955255 -98917914 - LTR30 LTR ERV1 -670 52 1 * 245 176 147 0 chr13 2955255 2955288 -98917881 - AluS SINE Alu -260 43 1 259 140 20 20 chr13 2955255 2955305 -98917864 - AluSp SINE Alu -134 169 120 555 281 215 36 chr13 2955371 2955954 -98917215 + L2 LINE L2 2624 3313 0 306 114 0 0 chr13 2956210 2956254 -98916915 - AluSx SINE Alu -260 48 5 1676 190 0 3 chr13 2956309 2956604 -98916565 + AluJb SINE Alu 1 294 -18 2026 190 81 46 chr13 2956605 2956755 -98916414 + L1M4 LINE L1 3700 3843 -2303 2063 83 0 113 chr13 2956755 2957092 -98916077 + AluSg SINE Alu 2 300 0 2026 190 81 46 chr13 2957092 2957417 -98915752 + L1M4 LINE L1 3843 4197 -1949 816 120 0 113 chr13 2957417 2957567 -98915602 + FLAM_C SINE Alu 1 133 0 2026 190 81 46 chr13 2957567 2957607 -98915562 + L1M4 LINE L1 4197 4234 -1912 1356 125 15 4 chr13 2957609 2957801 -98915368 + L1M3 LINE L1 5471 5662 -509 1773 178 0 3 chr13 2957801 2958099 -98915070 + AluJo SINE Alu 16 312 0 1356 125 15 4 chr13 2958099 2958121 -98915048 + L1M3 LINE L1 5662 5682 -489 2293 88 0 10 chr13 2958242 2958550 -98914619 + AluSx SINE Alu 1 305 -7 198 322 169 0 chr13 2958553 2958671 -98914498 - L2 LINE L2 -424 2890 2753 310 287 113 0 chr13 2958675 2958790 -98914379 - LTR67 LTR ERVL -2 555 428 701 96 0 0 chr13 2958884 2958978 -98914191 - AluJb SINE Alu -209 103 10 289 310 116 8 chr13 2959394 2959523 -98913646 + MER5B DNA MER1_type 1 143 -35 1941 54 0 8 chr13 2959694 2959935 -98913234 + AluY SINE Alu 62 300 -11 1543 113 16 23 chr13 2959994 2960250 -98912919 + AluSx SINE Alu 47 300 -12 561 107 0 0 chr13 2960809 2960884 -98912285 + FRAM/FAM SINE Alu 1 74 -102 1878 233 139 20 chr13 2960996 2961521 -98911648 + MLT1E2 LTR MaLR 1 598 -28 2009 114 32 38 chr13 2961521 2961703 -98911466 + MER44D DNA MER2_type 1 183 -2308 2338 96 0 3 chr13 2961703 2962016 -98911153 - AluSx SINE Alu 0 312 1 2009 114 32 38 chr13 2962016 2962174 -98910995 + MER44D DNA MER2_type 183 609 0 1878 233 139 20 chr13 2962174 2962207 -98910962 + MLT1E2 LTR MaLR 598 626 0 206 287 66 66 chr13 2962363 2962485 -98910684 + L2 LINE L2 3180 3301 -12 2303 88 0 0 chr13 2962773 2963069 -98910100 + AluSx SINE Alu 1 296 -16 1955 129 7 0 chr13 2963076 2963371 -98909798 + AluSx SINE Alu 1 297 -15 1292 133 68 117 chr13 2963377 2963686 -98909483 + AluJb SINE Alu 1 294 -8 363 287 131 8 chr13 2964613 2964735 -98908434 - L2 LINE L2 0 3272 3136 1125 183 5 0 chr13 2965174 2965387 -98907782 - AluJo SINE Alu -85 227 14 860 175 37 5 chr13 2965427 2965616 -98907553 - AluSp SINE Alu -25 288 94 2218 85 13 10 chr13 2965981 2966288 -98906881 + AluSp SINE Alu 3 310 -3 1638 172 10 3 chr13 2966304 2966601 -98906568 + AluJo SINE Alu 14 312 0 593 236 45 6 chr13 2966767 2966924 -98906245 - MLT1C LTR MaLR -49 418 256 216 204 0 23 chr13 2966950 2966994 -98906175 + CT-rich Low_complexity Low_complexity 4 46 0 872 154 7 0 chr13 2967003 2967146 -98906023 - AluJb SINE Alu -32 280 137 466 144 10 10 chr13 2967717 2967814 -98905355 + GA-rich Low_complexity Low_complexity 3 99 0 312 257 109 0 chr13 2967820 2967921 -98905248 + L2 LINE L2 3144 3255 -17 188 138 0 0 chr13 2968116 2968145 -98905024 + L2 LINE L2 3025 3053 -219 368 311 125 0 chr13 2968187 2968383 -98904786 + MIR SINE MIR 24 249 -13 1205 94 0 6 chr13 2970912 2971072 -98902097 + AluY SINE Alu 1 159 -152 369 389 12 0 chr13 2971261 2971428 -98901741 + G-rich Low_complexity Low_complexity 4 172 0 226 176 0 0 chr13 2971443 2971494 -98901675 + AluSp/q SINE Alu 253 303 0 1926 137 0 11 chr13 2971537 2971867 -98901302 - AluSx SINE Alu 0 327 1 694 146 182 16 chr13 2971875 2972067 -98901102 - L1MC5 LINE L1 -51 7910 7687 * 2367 176 63 37 chr13 2972046 2972263 -98900906 + L1M4 LINE L1 4143 4353 -1793 2293 173 73 7 chr13 2972263 2972690 -98900479 - MSTB2 LTR MaLR -2 455 1 2367 176 63 37 chr13 2972690 2973118 -98900051 + L1M4 LINE L1 4353 4805 -1341 2201 96 0 7 chr13 2973118 2973410 -98899759 + AluSg SINE Alu 1 290 -20 2416 179 39 42 chr13 2973527 2973594 -98899575 + L1M4 LINE L1 4783 4849 -1297 2215 90 10 7 chr13 2973594 2973884 -98899285 - AluSc SINE Alu -16 293 3 2416 179 39 42 chr13 2973884 2974071 -98899098 + L1M4 LINE L1 4849 5035 -1111 3467 79 23 0 chr13 2974071 2974514 -98898655 - MLT2A2 LTR ERVL 0 453 1 2416 179 39 42 chr13 2974514 2974856 -98898313 + L1M4 LINE L1 5035 5378 -768 1702 164 34 7 chr13 2974856 2975218 -98897951 + AluSx SINE Alu 1 370 0 11163 176 45 30 chr13 2975218 2975428 -98897741 + L1MB1 LINE L1 2761 2966 -3202 2307 107 0 10 chr13 2975428 2975736 -98897433 + AluSg SINE Alu 1 305 -5 11163 176 45 30 chr13 2975736 2977046 -98896123 + L1MB1 LINE L1 2966 4346 -1822 2121 119 10 3 chr13 2977046 2977339 -98895830 - AluSx SINE Alu -17 295 1 11163 176 45 30 chr13 2977339 2978484 -98894685 + L1MB1 LINE L1 4346 5472 -696 360 0 0 0 chr13 2978487 2978527 -98894642 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 548 132 0 0 chr13 2978532 2978608 -98894561 - AluJ SINE Alu -25 287 212 * 721 185 7 7 chr13 2978605 2978740 -98894429 - AluJ SINE Alu -164 148 14 3668 149 12 82 chr13 2978743 2979028 -98894141 + L1MB1 LINE L1 5452 5755 -413 709 177 8 0 chr13 2979028 2979158 -98894011 + FLAM_A SINE Alu 1 131 -2 3668 149 12 82 chr13 2979158 2979430 -98893739 + L1MB1 LINE L1 5755 5943 -225 2371 86 0 0 chr13 2979430 2979721 -98893448 + AluSx SINE Alu 5 295 -17 3668 149 12 82 chr13 2979721 2979931 -98893238 + L1MB1 LINE L1 5943 6166 -2 1926 110 26 55 chr13 2980002 2980338 -98892831 - AluSg SINE Alu 0 327 1 2467 82 3 0 chr13 2980339 2980644 -98892525 - AluSx SINE Alu -6 306 1 664 158 0 65 chr13 2980775 2980914 -98892255 - FLAM_C SINE Alu -12 131 2 1719 191 40 47 chr13 2981372 2981519 -98891650 - Charlie4a DNA MER1_type -1453 508 361 2446 98 30 8 chr13 2981519 2981885 -98891284 - THE1C LTR MaLR 0 375 2 1719 191 40 47 chr13 2981885 2982160 -98891009 - Charlie4a DNA MER1_type -1600 361 89 1989 115 33 0 chr13 2982449 2982719 -98890450 + AluSx SINE Alu 1 279 -33 201 39 0 0 chr13 2982721 2982747 -98890422 + (CAA)n Simple_repeat Simple_repeat 1 26 0 624 165 78 0 chr13 2983573 2983688 -98889481 - MER5A DNA MER1_type -5 184 61 1661 167 4 7 chr13 2983731 2984012 -98889157 - AluSx SINE Alu -31 281 2 328 225 28 0 chr13 2984563 2984634 -98888535 - MER5A DNA MER1_type -114 75 3 200 194 0 0 chr13 2984673 2984709 -98888460 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 2394 72 10 0 chr13 2984713 2985004 -98888165 - AluSg SINE Alu -16 294 1 1300 193 127 36 chr13 2985060 2985391 -98887778 + MER93b LTR ERV1 13 373 0 468 225 83 0 chr13 2985406 2985529 -98887640 - L1ME1 LINE L1 0 6334 6041 1884 172 0 0 chr13 2985541 2985832 -98887337 + AluJb SINE Alu 13 303 -9 1224 175 13 4 chr13 2985988 2986216 -98886953 - L1ME1 LINE L1 -134 6032 5803 24 53 0 0 chr13 2986297 2986335 -98886834 + AT_rich Low_complexity Low_complexity 1 38 0 892 179 24 126 chr13 2986356 2986602 -98886567 - AluJo SINE Alu -89 223 3 1460 193 56 11 chr13 2986632 2986901 -98886268 + AluJo SINE Alu 1 281 -31 324 0 0 0 chr13 2986901 2986937 -98886232 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 2560 70 0 0 chr13 2987291 2987593 -98885576 - AluSx SINE Alu -10 302 1 1172 59 0 0 chr13 2987594 2987729 -98885440 - AluSq/x SINE Alu -177 135 1 913 171 96 64 chr13 2987734 2987985 -98885184 - MER33 DNA MER1_type -58 266 8 184 276 26 26 chr13 2988153 2988229 -98884940 - MIR3 SINE MIR -43 165 90 346 313 6 39 chr13 2988408 2988590 -98884579 - MER5A DNA MER1_type -13 176 1 1669 124 83 4 chr13 2988789 2989091 -98884078 + AluSx SINE Alu 5 327 0 23 33 0 0 chr13 2989130 2989160 -98884009 + AT_rich Low_complexity Low_complexity 1 30 0 1955 101 4 43 chr13 2989195 2989498 -98883671 + AluSq SINE Alu 17 308 0 22 0 0 0 chr13 2989566 2989588 -98883581 + AT_rich Low_complexity Low_complexity 1 22 0 1557 173 20 14 chr13 2989595 2989890 -98883279 + AluJo SINE Alu 1 297 -15 1631 175 158 25 chr13 2990487 2990645 -98882524 + MLT1C LTR MaLR 1 137 -330 2008 88 62 39 chr13 2990645 2990950 -98882219 + AluSx SINE Alu 1 312 0 1631 175 158 25 chr13 2990950 2991197 -98881972 + MLT1C LTR MaLR 137 460 -7 889 166 31 34 chr13 2991280 2991483 -98881686 - MLT1A1 LTR MaLR 0 374 144 1935 82 7 44 chr13 2993070 2993340 -98879829 + AluSq SINE Alu 34 293 -20 28 0 0 0 chr13 2993549 2993577 -98879592 + AT_rich Low_complexity Low_complexity 1 28 0 412 61 30 30 chr13 2993932 2993998 -98879171 - Alu SINE Alu -251 67 2 940 157 0 24 chr13 2994427 2994593 -98878576 - MLT1A1 LTR MaLR -203 162 1 272 271 47 9 chr13 2994857 2994964 -98878205 - L1ME LINE L1 -509 5612 5502 2465 53 10 3 chr13 2995046 2995348 -98877821 + AluY SINE Alu 1 304 -7 2317 91 0 7 chr13 2995358 2995672 -98877497 + AluSx SINE Alu 1 312 0 27 0 0 0 chr13 2995870 2995897 -98877272 + AT_rich Low_complexity Low_complexity 1 27 0 1849 227 75 98 chr13 2995953 2997099 -98876070 + L1MC5 LINE L1 6788 7907 -54 1047 110 0 0 chr13 2997159 2997295 -98875874 + AluSq/x SINE Alu 1 136 -177 2048 118 10 7 chr13 2997295 2997583 -98875586 + AluSx SINE Alu 1 289 -23 205 217 0 29 chr13 2998352 2998421 -98874748 + T-rich Low_complexity Low_complexity 5 71 0 764 169 0 0 chr13 2998424 2998542 -98874627 - FLAM_C SINE Alu -15 118 1 286 263 74 0 chr13 2998862 2998957 -98874212 - MLT1J LTR MaLR -98 413 312 775 62 71 18 chr13 3000810 3000922 -98872247 + MER30 DNA MER1_type 2 119 -111 2227 97 7 7 chr13 3000925 3001224 -98871945 + AluSx SINE Alu 1 299 -13 358 264 124 3 chr13 3001321 3001518 -98871651 + L1ME1 LINE L1 1325 1667 -5293 1522 287 85 36 chr13 3001534 3001627 -98871542 + L1ME1 LINE L1 1495 1582 -5556 1638 157 20 34 chr13 3001627 3001921 -98871248 - AluJb SINE Alu -22 290 1 1522 287 85 36 chr13 3001921 3002863 -98870306 + L1ME1 LINE L1 1582 2728 -4410 2541 60 0 10 chr13 3002869 3003183 -98869986 - AluY SINE Alu 0 311 1 708 90 0 63 chr13 3003234 3003345 -98869824 + MSTA LTR MaLR 1 104 -324 1910 122 3 83 chr13 3003345 3003672 -98869497 - AluSx SINE Alu -7 305 5 2299 105 0 0 chr13 3003684 3003979 -98869190 - AluSg SINE Alu -14 296 2 4898 207 60 100 chr13 3003982 3004623 -98868546 + L1ME1 LINE L1 4514 5179 -1798 2191 95 4 0 chr13 3004623 3004896 -98868273 + AluSc SINE Alu 1 274 -35 4898 207 60 100 chr13 3004896 3005040 -98868129 + L1ME1 LINE L1 5179 5327 -1650 4519 25 2 2 chr13 3005040 3005561 -98867608 + L1PA3 LINE L1 5634 6154 -1 4898 207 60 100 chr13 3005561 3006701 -98866468 + L1ME1 LINE L1 5327 6389 -588 669 202 0 0 chr13 3006701 3006815 -98866354 - FLAM_C SINE Alu -27 116 3 4898 207 60 100 chr13 3006815 3007314 -98865855 + L1ME1 LINE L1 6389 6907 -70 1899 84 4 48 chr13 3008075 3008348 -98864821 - AluSq SINE Alu -8 305 45 1082 217 63 3 chr13 3008577 3008863 -98864306 + MER33 DNA MER1_type 20 322 -2 27 29 0 0 chr13 3009018 3009052 -98864117 + AT_rich Low_complexity Low_complexity 1 34 0 1999 118 4 11 chr13 3009056 3009336 -98863833 - AluSx SINE Alu -34 278 1 273 57 0 0 chr13 3009359 3009394 -98863775 + (T)n Simple_repeat Simple_repeat 1 35 0 2268 103 3 0 chr13 3009495 3009796 -98863373 - AluSp SINE Alu -11 302 1 324 0 0 0 chr13 3009805 3009841 -98863328 + (T)n Simple_repeat Simple_repeat 1 36 0 273 200 0 14 chr13 3010115 3010185 -98862984 + AluY SINE Alu 129 197 -104 245 119 48 0 chr13 3010182 3010224 -98862945 + Alu SINE Alu 90 133 0 * 201 323 113 0 chr13 3010918 3011042 -98862127 + L3 LINE CR1 1276 1413 -164 306 304 0 0 chr13 3011174 3011332 -98861837 + (CA)n Simple_repeat Simple_repeat 1 158 0 324 210 0 0 chr13 3011338 3011400 -98861769 - MER5B DNA MER1_type -78 100 39 2267 131 0 6 chr13 3011984 3012298 -98860871 - AluSx SINE Alu 0 312 1 468 257 40 23 chr13 3012306 3012481 -98860688 - L1MC5 LINE L1 -37 7924 7747 399 58 0 0 chr13 3013105 3013157 -98860012 + MADE1 DNA Mariner 1 52 -28 522 128 0 0 chr13 3013497 3013575 -98859594 - AluSp/q SINE Alu -14 299 222 380 263 15 7 chr13 3013778 3013915 -98859254 + L1M4 LINE L1 4995 5132 -1014 2292 67 0 53 chr13 3013916 3014263 -98858906 + AluSq SINE Alu 1 331 0 378 291 268 0 chr13 3014339 3014518 -98858651 - MIR SINE MIR -1 261 35 1911 135 28 0 chr13 3014615 3014897 -98858272 + AluSx SINE Alu 3 292 -20 2287 120 3 0 chr13 3015633 3015941 -98857228 + AluSx SINE Alu 1 309 -3 962 133 0 14 chr13 3016086 3016229 -98856940 + FLAM_C SINE Alu 3 143 0 2161 124 17 0 chr13 3016979 3017270 -98855899 + AluSx SINE Alu 1 296 -16 2186 112 11 0 chr13 3017272 3017558 -98855611 + AluSx SINE Alu 1 289 -23 2266 116 3 0 chr13 3017560 3017863 -98855306 + AluSx SINE Alu 1 304 -8 343 291 68 0 chr13 3018505 3018622 -98854547 - L2 LINE L2 -25 3247 3123 219 139 0 0 chr13 3019461 3019497 -98853672 + (TTCC)n Simple_repeat Simple_repeat 2 37 0 242 116 23 0 chr13 3019515 3019558 -98853611 + CT-rich Low_complexity Low_complexity 2 45 0 1799 180 0 19 chr13 3019558 3019875 -98853294 - AluJo SINE Alu -1 311 1 323 229 14 14 chr13 3020435 3020505 -98852664 + L2 LINE L2 3205 3274 -39 197 327 39 19 chr13 3020655 3020759 -98852410 + MIR SINE MIR 65 170 -92 1284 194 34 60 chr13 3021023 3021373 -98851796 + MER7C DNA MER2_type 1 341 -261 520 141 66 25 chr13 3021481 3021594 -98851575 + MER7C DNA MER2_type 315 432 -170 648 176 42 0 chr13 3021594 3021713 -98851456 + MER6 DNA MER2_type 1 124 -741 489 133 0 22 chr13 3021709 3021799 -98851370 + MER6 DNA MER2_type 778 865 0 * 1083 134 6 0 chr13 3021799 3021962 -98851207 + MER7C DNA MER2_type 449 612 0 2345 160 47 13 chr13 3022630 3023079 -98850090 - MER101 LTR ERV1 0 474 11 381 253 104 0 chr13 3023150 3023304 -98849865 - HAL1 LINE L1 -1599 908 739 219 36 0 0 chr13 3023468 3023496 -98849673 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2031 125 0 0 chr13 3023496 3023775 -98849394 - AluSx SINE Alu -33 279 1 208 182 18 55 chr13 3024525 3024580 -98848589 - L2 LINE L2 -1 3271 3219 600 330 51 3 chr13 3024749 3025103 -98848066 - L1ME LINE L1 -412 5758 5388 263 196 54 76 chr13 3025542 3025634 -98847535 + L2 LINE L2 2626 2715 -599 2208 118 3 3 chr13 3025634 3025931 -98847238 + AluSx SINE Alu 1 297 -15 1111 40 0 40 chr13 3025931 3026160 -98847009 + (TA)n Simple_repeat Simple_repeat 1 219 0 2166 89 3 74 chr13 3027526 3027862 -98845307 - AluSp SINE Alu -1 312 1 926 146 0 20 chr13 3027866 3028017 -98845152 - FRAM SINE Alu -8 168 21 2203 114 7 3 chr13 3029244 3029542 -98843627 - AluSq SINE Alu -14 299 1 1535 151 22 80 chr13 3029821 3029953 -98843216 + AluJb SINE Alu 1 139 -173 2211 135 0 3 chr13 3029953 3030264 -98842905 + AluSx SINE Alu 1 310 -2 1535 151 22 80 chr13 3030264 3030455 -98842714 + AluJb SINE Alu 139 305 -7 1737 164 12 49 chr13 3030692 3031016 -98842153 + AluJo SINE Alu 1 312 0 2026 135 0 13 chr13 3031017 3031320 -98841849 + AluJb SINE Alu 1 299 -13 2492 82 0 0 chr13 3031482 3031788 -98841381 + AluY SINE Alu 1 306 -5 2285 102 7 0 chr13 3031788 3032083 -98841086 + AluSp SINE Alu 1 297 -16 4198 126 38 7 chr13 3032083 3032934 -98840235 + L1MA4A LINE L1 5322 6302 -1 2199 113 0 25 chr13 3032935 3033255 -98839914 + AluSx SINE Alu 1 312 0 255 79 0 0 chr13 3034368 3034406 -98838763 + (CGGGGG)n Simple_repeat Simple_repeat 3 40 0 560 103 32 174 chr13 3036504 3036611 -98836558 - FLAM_C SINE Alu -169 133 53 222 37 0 0 chr13 3036611 3036638 -98836531 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 560 103 32 174 chr13 3036638 3036685 -98836484 - FLAM_C SINE Alu -249 53 1 192 250 36 18 chr13 3037801 3037857 -98835312 + MIR SINE MIR 34 90 -118 2501 85 0 3 chr13 3038786 3039093 -98834076 + AluSc SINE Alu 1 306 -3 208 342 26 13 chr13 3039305 3039381 -98833788 + L2 LINE L2 3171 3247 -25 1391 166 158 4 chr13 3040643 3040902 -98832267 + AluJo SINE Alu 2 300 -2 350 256 19 30 chr13 3041115 3041219 -98831950 + MIR SINE MIR 65 162 -46 198 292 0 0 chr13 3041592 3041640 -98831529 + L2 LINE L2 3223 3270 -2 261 262 56 19 chr13 3042350 3042457 -98830712 + L2 LINE L2 2420 2530 -784 2045 144 3 10 chr13 3042473 3042771 -98830398 - AluSx SINE Alu -14 298 3 226 238 16 32 chr13 3043592 3043655 -98829514 + LTR16A LTR ERVL 245 306 -144 1589 143 47 14 chr13 3044185 3044464 -98828705 + AluJb SINE Alu 12 299 -13 378 68 85 0 chr13 3045500 3045559 -98827610 - U6 snRNA snRNA -43 64 1 1446 179 65 21 chr13 3045559 3045849 -98827320 - AluJo SINE Alu -9 303 1 1060 129 101 60 chr13 3045906 3046123 -98827046 + AluSg/x SINE Alu 80 305 -7 23 0 0 0 chr13 3046165 3046188 -98826981 + AT_rich Low_complexity Low_complexity 1 23 0 2175 111 0 0 chr13 3046192 3046471 -98826698 + AluY SINE Alu 1 279 -32 198 0 0 0 chr13 3046474 3046496 -98826673 + (TAA)n Simple_repeat Simple_repeat 3 24 0 22 56 0 0 chr13 3046556 3046592 -98826577 + AT_rich Low_complexity Low_complexity 1 36 0 231 367 14 50 chr13 3047122 3047261 -98825908 + MIR3 SINE MIR 68 201 -7 544 233 48 0 chr13 3047476 3047622 -98825547 + MLT1H LTR MaLR 75 227 -322 330 266 86 22 chr13 3047684 3047823 -98825346 + MLT1H LTR MaLR 341 488 -67 1003 135 0 0 chr13 3047836 3047977 -98825192 + AluSg/x SINE Alu 148 288 -24 642 265 24 6 chr13 3048104 3048274 -98824895 - L1ME3A LINE L1 -295 5875 5703 251 242 11 105 chr13 3048774 3048869 -98824300 - MER91B DNA MER1_type -104 86 1 180 294 94 24 chr13 3048869 3048947 -98824222 - L2 LINE L2 -52 3220 3137 1534 204 7 0 chr13 3049286 3049570 -98823599 + AluJo SINE Alu 1 286 -26 285 276 72 23 chr13 3049594 3049772 -98823397 + MIR3 SINE MIR 6 186 -76 2018 152 7 3 chr13 3049958 3050261 -98822908 - AluSx SINE Alu -8 304 1 2451 83 0 0 chr13 3050564 3050866 -98822303 + AluSc SINE Alu 1 302 -7 1558 179 74 14 chr13 3051326 3051689 -98821480 + L1MB4 LINE L1 5790 6174 -6 1358 123 202 40 chr13 3051778 3052031 -98821138 + AluSg SINE Alu 1 294 -6 305 103 0 118 chr13 3053745 3053813 -98819356 - Alu SINE Alu -9 293 234 850 129 0 0 chr13 3053832 3053948 -98819221 - AluJb SINE Alu -196 116 1 2149 75 78 24 chr13 3055144 3055438 -98817731 + AluY SINE Alu 1 310 -1 2228 87 7 0 chr13 3057051 3057358 -98815811 + AluY SINE Alu 1 311 0 2073 87 11 7 chr13 3057423 3057710 -98815459 + AluSx SINE Alu 5 292 -20 21 0 0 0 chr13 3058345 3058366 -98814803 + GC_rich Low_complexity Low_complexity 1 21 0 992 151 0 7 chr13 3058570 3058722 -98814447 + AluSg/x SINE Alu 149 299 -13 26 0 0 0 chr13 3058879 3058905 -98814264 + AT_rich Low_complexity Low_complexity 1 26 0 2333 134 27 2 chr13 3059035 3059439 -98813730 - L1MC1 LINE L1 -361 5972 5559 560 154 106 49 chr13 3059440 3059563 -98813606 + FLAM_C SINE Alu 1 130 -3 2349 92 3 3 chr13 3059611 3059916 -98813253 - AluSq SINE Alu -8 305 1 270 328 65 44 chr13 3060015 3060490 -98812679 + L2 LINE L2 2736 3260 -12 619 105 61 18 chr13 3060803 3060917 -98812252 + L1MC/D LINE L1 5453 5571 -762 1804 136 19 49 chr13 3060919 3061088 -98812081 - AluJo SINE Alu -13 299 127 2478 68 0 6 chr13 3061088 3061399 -98811770 - AluY SINE Alu -2 309 1 2360 100 13 0 chr13 3061399 3061699 -98811470 - AluSx SINE Alu -8 304 1 1804 136 19 49 chr13 3061699 3061836 -98811333 - AluJo SINE Alu -183 129 1 790 201 37 123 chr13 3061894 3062218 -98810951 + MLT1A1 LTR MaLR 1 296 -69 439 133 0 67 chr13 3062260 3062287 -98810882 + MLT1A1 LTR MaLR 282 309 -56 2251 114 7 0 chr13 3062287 3062593 -98810576 - AluSx SINE Alu -4 308 1 439 133 0 67 chr13 3062593 3062655 -98810514 + MLT1A1 LTR MaLR 309 365 0 278 321 58 21 chr13 3062711 3062901 -98810268 - L2 LINE L2 -552 2762 2566 2452 84 0 0 chr13 3063002 3063298 -98809871 + AluSq SINE Alu 1 296 -17 958 170 44 0 chr13 3063325 3063484 -98809685 + FAM SINE Alu 5 170 -5 2272 106 3 0 chr13 3063495 3063787 -98809382 + AluSx SINE Alu 4 296 -16 663 71 20 0 chr13 3063790 3063889 -98809280 - MER47A DNA MER2_type -85 281 181 1021 141 22 22 chr13 3063989 3064174 -98808995 - MER47A DNA MER2_type -158 208 24 1779 106 0 0 chr13 3064770 3064996 -98808173 - AluSg SINE Alu -84 226 1 815 138 0 32 chr13 3065007 3065130 -98808039 - FLAM_C SINE Alu -18 125 7 2331 87 3 0 chr13 3065649 3065937 -98807232 - AluSp SINE Alu -5 308 20 1364 197 23 83 chr13 3066280 3066666 -98806503 + MLT1A1 LTR MaLR 1 363 -2 261 0 0 0 chr13 3066672 3066701 -98806468 + (TG)n Simple_repeat Simple_repeat 1 29 0 975 157 41 15 chr13 3066754 3066951 -98806218 + L1MB2 LINE L1 5968 6169 -2 248 312 26 79 chr13 3067645 3067692 -98805477 - MER91B DNA MER1_type -10 180 132 1989 147 3 10 chr13 3067692 3067991 -98805178 + AluSx SINE Alu 6 302 -10 248 312 26 79 chr13 3067991 3068132 -98805037 - MER91B DNA MER1_type -58 132 2 662 241 27 68 chr13 3068371 3068512 -98804657 - MIR SINE MIR -21 241 111 1148 181 114 55 chr13 3068512 3068855 -98804314 - MLT1A1 LTR MaLR 0 365 3 662 241 27 68 chr13 3068855 3068933 -98804236 - MIR SINE MIR -151 111 31 254 65 87 0 chr13 3068986 3069032 -98804137 - FLAM_A SINE Alu -1 132 83 210 125 0 83 chr13 3069042 3069090 -98804079 + (TTTTTA)n Simple_repeat Simple_repeat 5 48 0 199 255 128 39 chr13 3069880 3069982 -98803187 - L2 LINE L2 0 3272 3162 661 153 68 2 chr13 3070120 3070363 -98802806 + AluJ SINE Alu 2 303 -9 2256 121 0 0 chr13 3070652 3070949 -98802220 + AluSx SINE Alu 1 297 -15 100 68 0 0 chr13 3070950 3071141 -98802028 + AT_rich Low_complexity Low_complexity 1 191 0 1282 277 134 34 chr13 3071183 3071883 -98801286 - L1MC4a LINE L1 -1779 6029 5260 928 131 0 22 chr13 3071884 3072021 -98801148 + AluJb SINE Alu 1 134 -178 21 0 0 0 chr13 3072023 3072044 -98801125 + AT_rich Low_complexity Low_complexity 1 21 0 827 148 28 7 chr13 3072122 3072264 -98800905 - FRAM SINE Alu -31 145 1 1555 174 26 0 chr13 3072322 3072586 -98800583 - AluJo SINE Alu -41 271 1 377 274 13 111 chr13 3072639 3072688 -98800481 + L2 LINE L2 3103 3155 -158 2105 144 3 3 chr13 3072688 3073000 -98800169 - AluSx SINE Alu 0 312 1 377 274 13 111 chr13 3073000 3073184 -98799985 + L2 LINE L2 3155 3313 0 2095 120 7 7 chr13 3073257 3073548 -98799621 + AluSx SINE Alu 1 291 -21 406 100 11 0 chr13 3073684 3073756 -98799413 + Alu SINE Alu 1 53 -255 297 188 0 0 chr13 3074207 3074255 -98798914 + MLT1A1 LTR MaLR 96 143 -222 1910 100 0 4 chr13 3074263 3074503 -98798666 - AluSc SINE Alu -53 256 18 * 2112 91 4 0 chr13 3074501 3074765 -98798404 - AluSp SINE Alu -48 265 1 958 124 14 0 chr13 3074773 3074918 -98798251 - AluSg/x SINE Alu -38 272 126 1084 155 52 0 chr13 3074920 3075114 -98798055 + MLT1A1 LTR MaLR 162 365 0 2279 29 39 72 chr13 3075735 3076041 -98797128 + AluY SINE Alu 1 296 -15 2357 97 0 0 chr13 3076759 3077057 -98796112 + AluSq SINE Alu 1 298 -15 180 0 0 0 chr13 3077081 3077101 -98796068 + (CAA)n Simple_repeat Simple_repeat 2 21 0 461 65 0 0 chr13 3077160 3077222 -98795947 - Alu SINE Alu -10 300 239 2269 82 0 0 chr13 3077389 3077700 -98795469 + AluSg SINE Alu 9 310 0 278 276 125 48 chr13 3077771 3078011 -98795158 + L1ME3A LINE L1 5539 5810 -311 1974 133 7 0 chr13 3078011 3078296 -98794873 + AluSx SINE Alu 1 287 -25 278 276 125 48 chr13 3078296 3078366 -98794803 + L1ME3A LINE L1 5810 5873 -248 837 157 85 20 chr13 3078861 3079014 -98794155 + AluJb SINE Alu 137 299 -13 666 172 15 60 chr13 3079253 3079387 -98793782 - FLAM_C SINE Alu -1 132 5 1017 127 14 0 chr13 3079414 3079556 -98793613 - U4 snRNA snRNA -1 144 1 1858 99 4 11 chr13 3079624 3079886 -98793283 + AluSx SINE Alu 42 301 -11 2238 123 3 3 chr13 3080679 3080988 -98792181 + AluSq SINE Alu 1 309 -4 1939 142 33 0 chr13 3080993 3081295 -98791874 + AluJb SINE Alu 1 312 0 650 165 9 9 chr13 3081747 3081862 -98791307 + LTR56 LTR ERV1 4 118 -327 2497 65 0 0 chr13 3081866 3082160 -98791009 - AluY SINE Alu -17 294 1 21 36 0 0 chr13 3083166 3083194 -98789975 + AT_rich Low_complexity Low_complexity 1 28 0 349 260 30 0 chr13 3083202 3083302 -98789867 + L1ME3A LINE L1 6065 6167 -3 1403 212 42 3 chr13 3083302 3083585 -98789584 + AluJb SINE Alu 1 294 -18 2329 89 13 0 chr13 3083595 3083897 -98789272 + AluY SINE Alu 1 306 -5 2056 120 3 13 chr13 3083940 3084239 -98788930 + AluSx SINE Alu 1 296 -16 450 0 0 0 chr13 3085578 3085628 -98787541 + (TG)n Simple_repeat Simple_repeat 2 51 0 1729 124 29 18 chr13 3085636 3085911 -98787258 - AluJo SINE Alu -30 282 5 22 0 0 0 chr13 3086961 3086983 -98786186 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr13 3087419 3087440 -98785729 + AT_rich Low_complexity Low_complexity 1 21 0 195 261 15 46 chr13 3088608 3088673 -98784496 - MIR SINE MIR -4 258 196 2389 85 0 19 chr13 3089437 3089756 -98783413 + AluSq SINE Alu 1 313 0 233 242 0 30 chr13 3089926 3089992 -98783177 - L2 LINE L2 -325 2988 2925 30 59 0 0 chr13 3090596 3090647 -98782522 + GC_rich Low_complexity Low_complexity 1 51 0 27 29 0 0 chr13 3090758 3090792 -98782377 + GC_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr13 3090835 3090856 -98782313 + GC_rich Low_complexity Low_complexity 1 21 0 2341 86 3 3 chr13 3091652 3091953 -98781216 + AluSp SINE Alu 2 302 -11 998 154 0 57 chr13 3092718 3092893 -98780276 - FRAM SINE Alu -11 165 1 290 244 48 48 chr13 3093095 3093343 -98779826 + L1ME4a LINE L1 5676 5915 -206 390 272 202 6 chr13 3093986 3094159 -98779010 - MIR SINE MIR -25 237 31 2299 113 0 0 chr13 3094212 3094512 -98778657 + AluSg SINE Alu 1 300 -10 2085 124 0 0 chr13 3094772 3095074 -98778095 + AluSx SINE Alu 1 302 0 1628 125 136 15 chr13 3095318 3095582 -98777587 + AluJb SINE Alu 1 296 -16 233 138 0 17 chr13 3095608 3095666 -98777503 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 440 177 38 20 chr13 3095680 3095818 -98777351 - AluJb SINE Alu -151 161 2 262 242 0 45 chr13 3095844 3095910 -98777259 + MER21B LTR ERV1 6 68 -795 2616 211 154 32 chr13 3095943 3096380 -98776789 + MER21B LTR ERV1 19 401 -462 2045 91 48 42 chr13 3096380 3096689 -98776480 - AluSx SINE Alu -1 311 1 2616 211 154 32 chr13 3096689 3096991 -98776178 + MER21B LTR ERV1 401 848 -15 1957 130 27 0 chr13 3097336 3097628 -98775541 - AluJb SINE Alu -8 304 5 2075 134 0 3 chr13 3097651 3097941 -98775228 - AluSx SINE Alu -23 289 1 338 37 0 37 chr13 3098012 3098066 -98775103 - L1MB3 LINE L1 -2 6181 6130 2125 70 11 15 chr13 3099079 3099349 -98773820 - AluY SINE Alu -11 300 32 1811 115 14 22 chr13 3099722 3100000 -98773169 - AluSx SINE Alu -12 300 25 931 162 61 71 chr13 3100850 3101048 -98772121 + AluJb SINE Alu 89 284 -28 2215 89 7 23 chr13 3101092 3101395 -98771774 + AluSg SINE Alu 1 298 -12 258 269 12 88 chr13 3101410 3101570 -98771599 - L1ME3 LINE L1 -81 6081 5934 1219 231 152 71 chr13 3101610 3102033 -98771136 - L1ME3 LINE L1 -219 5951 5564 1921 129 10 26 chr13 3102033 3102336 -98770833 - AluSq SINE Alu -15 298 1 1873 102 0 117 chr13 3102339 3102682 -98770487 - AluSx SINE Alu -9 303 1 1219 231 152 71 chr13 3102682 3102951 -98770218 - L1ME3 LINE L1 -607 5563 5197 2224 108 3 0 chr13 3104764 3105050 -98768119 - AluSx SINE Alu -25 287 1 1048 99 0 0 chr13 3105089 3105220 -98767949 + AluSq/x SINE Alu 1 131 -182 271 315 35 21 chr13 3106094 3106237 -98766932 + MIR3 SINE MIR 50 194 -14 727 208 126 26 chr13 3106250 3106481 -98766688 + MIR SINE MIR 7 260 -2 2001 101 45 3 chr13 3106531 3106818 -98766351 - AluY SINE Alu -12 299 1 1492 170 69 22 chr13 3106901 3107177 -98765992 + AluJo SINE Alu 4 292 -20 228 35 0 0 chr13 3107177 3107206 -98765963 + (CATA)n Simple_repeat Simple_repeat 2 30 0 382 292 90 7 chr13 3107254 3107398 -98765771 + MIR SINE MIR 29 184 -78 2328 113 0 0 chr13 3107632 3107932 -98765237 + AluSx SINE Alu 1 300 -12 1506 133 0 5 chr13 3108174 3108384 -98764785 + AluJb SINE Alu 1 209 -103 2216 121 82 3 chr13 3108384 3108611 -98764558 - MER83B LTR ERV1 0 378 114 1553 128 139 4 chr13 3108611 3108877 -98764292 + AluJb SINE Alu 1 302 0 2216 121 82 3 chr13 3108877 3108989 -98764180 - MER83B LTR ERV1 -264 114 12 286 108 0 0 chr13 3108988 3109025 -98764144 + AluJ/FRAM SINE Alu 230 266 -36 * 180 111 0 0 chr13 3109069 3109096 -98764073 + (A)n Simple_repeat Simple_repeat 1 27 0 1803 152 10 14 chr13 3109284 3109573 -98763596 + AluJb SINE Alu 1 288 -24 405 55 0 0 chr13 3110256 3110311 -98762858 - L1PB1 LINE L1 -3 6148 6094 2404 86 0 9 chr13 3110312 3110627 -98762542 - AluSx SINE Alu 0 312 1 2239 157 86 80 chr13 3110628 3110746 -98762423 - L1MB4 LINE L1 -43 6137 6021 439 152 248 38 chr13 3110746 3110851 -98762318 - FLAM_A SINE Alu -5 128 2 2239 157 86 80 chr13 3110851 3111323 -98761846 - L1MB4 LINE L1 -159 6021 5543 837 194 15 77 chr13 3112066 3112126 -98761043 - MLT2C1 LTR ERVL -4 393 331 2541 65 0 3 chr13 3112126 3112432 -98760737 + AluSg SINE Alu 2 306 -4 837 194 15 77 chr13 3112432 3112704 -98760465 - MLT2C1 LTR ERVL -66 331 18 419 202 121 0 chr13 3112962 3113061 -98760108 + Tigger4(Zombi) DNA MER2_type 2 112 -2619 1302 71 0 0 chr13 3113066 3113220 -98759949 - AluSg/x SINE Alu -11 299 146 1100 168 58 0 chr13 3113220 3113428 -98759741 + Tigger4(Zombi) DNA MER2_type 2511 2730 -1 2101 101 3 42 chr13 3113512 3113818 -98759351 - AluSx SINE Alu -17 295 2 387 242 73 84 chr13 3113988 3114061 -98759108 - MER104 DNA Tc2 -1720 178 106 2264 88 7 14 chr13 3114061 3114355 -98758814 + AluSx SINE Alu 1 292 -20 387 242 73 84 chr13 3114355 3114459 -98758710 - MER104 DNA Tc2 -1792 106 3 252 246 304 7 chr13 3116209 3116347 -98756822 + MIR SINE MIR 81 259 -3 370 238 0 12 chr13 3117494 3117574 -98755595 + Tigger5 DNA MER2_type 1 79 -2244 280 307 0 0 chr13 3117577 3117652 -98755517 - Tigger5 DNA MER2_type -7 2316 2242 * 356 197 56 0 chr13 3117646 3117717 -98755452 + Tigger5 DNA MER2_type 2246 2320 -3 2172 118 23 0 chr13 3118635 3118939 -98754230 + AluSx SINE Alu 1 311 -1 2162 102 0 0 chr13 3118978 3119252 -98753917 + AluSg SINE Alu 1 274 -36 231 36 0 0 chr13 3119254 3119282 -98753887 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 191 326 119 47 chr13 3119333 3119569 -98753600 - L2 LINE L2 -25 3247 2995 330 213 185 0 chr13 3119822 3119930 -98753239 + MIR SINE MIR 117 244 -18 353 274 85 81 chr13 3119973 3120221 -98752948 - L2 LINE L2 -52 3261 3013 344 206 103 59 chr13 3120222 3120358 -98752811 - MLT1K LTR MaLR -2 586 445 327 267 204 0 chr13 3120638 3120829 -98752340 - L2 LINE L2 -338 2976 2747 2812 83 8 0 chr13 3121020 3121380 -98751789 + THE1B LTR MaLR 2 364 0 887 269 201 5 chr13 3121380 3121819 -98751350 + L2 LINE L2 1689 2213 -1101 27 29 0 0 chr13 3121919 3121953 -98751216 + AT_rich Low_complexity Low_complexity 1 34 0 1832 74 0 0 chr13 3123409 3123625 -98749544 - AluSc SINE Alu -13 296 81 1864 158 3 0 chr13 3124343 3124628 -98748541 - AluJb SINE Alu -26 286 1 270 73 0 0 chr13 3124815 3124856 -98748313 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1313 160 0 50 chr13 3124859 3125097 -98748072 - AluJo SINE Alu -30 282 57 707 212 8 0 chr13 3125399 3125531 -98747638 + FLAM_A SINE Alu 1 133 0 246 282 58 0 chr13 3125862 3125965 -98747204 + L1ME LINE L1 5675 5783 -338 2349 86 0 10 chr13 3126213 3126514 -98746655 + AluSq SINE Alu 1 298 -15 468 289 0 0 chr13 3126514 3126694 -98746475 + (TA)n Simple_repeat Simple_repeat 1 180 0 225 239 0 0 chr13 3126747 3126793 -98746376 - L1MC4 LINE L1 -1339 6703 6658 247 309 0 0 chr13 3126819 3126916 -98746253 - L1MC4 LINE L1 -1327 6668 6612 201 268 0 0 chr13 3126919 3126960 -98746209 + (CATA)n Simple_repeat Simple_repeat 4 44 0 241 267 35 12 chr13 3126961 3127047 -98746122 + L1MC4 LINE L1 6614 6701 -1341 201 195 0 0 chr13 3127050 3127091 -98746078 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2886 16 0 0 chr13 3127604 3127915 -98745254 + AluYb8 SINE Alu 1 311 -7 1978 136 71 0 chr13 3128067 3128391 -98744778 - MER7A DNA MER2_type 0 346 2 2204 101 3 13 chr13 3129170 3129476 -98743693 + AluSg SINE Alu 6 308 -2 1114 135 29 48 chr13 3129845 3130052 -98743117 - MER3 DNA MER1_type 0 209 7 367 260 185 33 chr13 3130168 3130595 -98742574 - L1ME4a LINE L1 -68 6053 5562 299 170 20 0 chr13 3131014 3131114 -98742055 - L1ME4a LINE L1 -723 5439 5365 2093 106 14 7 chr13 3131121 3131413 -98741756 - AluSx SINE Alu -18 294 1 2533 41 3 0 chr13 3131418 3131710 -98741459 - AluY SINE Alu -17 294 2 1691 138 36 56 chr13 3133823 3134127 -98739042 + AluSx SINE Alu 1 298 -14 367 175 299 0 chr13 3134185 3134282 -98738887 + FLAM_A SINE Alu 1 126 -7 1974 112 4 4 chr13 3134290 3134557 -98738612 + AluSx SINE Alu 1 267 -45 988 102 0 0 chr13 3134681 3134809 -98738360 + AluSq/x SINE Alu 8 135 -178 1851 126 3 50 chr13 3134809 3135111 -98738058 + AluSx SINE Alu 1 288 -24 34 42 0 0 chr13 3135114 3135162 -98738007 + AT_rich Low_complexity Low_complexity 1 48 0 582 89 0 170 chr13 3135419 3135467 -98737702 + L1MA3 LINE L1 6093 6148 -157 2191 110 0 13 chr13 3135467 3135767 -98737402 + AluSc SINE Alu 1 296 -13 582 89 0 170 chr13 3135767 3135779 -98737390 + L1MA3 LINE L1 6148 6160 -145 1424 175 110 0 chr13 3135779 3136042 -98737127 + AluJb SINE Alu 1 292 -20 582 89 0 170 chr13 3136042 3136115 -98737054 + L1MA3 LINE L1 6160 6204 -101 491 150 62 0 chr13 3136262 3136342 -98736827 + FRAM SINE Alu 64 148 -28 739 193 7 0 chr13 3136353 3136488 -98736681 + FLAM_C SINE Alu 2 137 -6 572 125 0 0 chr13 3136682 3136770 -98736399 - AluJo SINE Alu -11 301 214 975 152 0 7 chr13 3136770 3136921 -98736248 - AluJo SINE Alu -162 150 1 477 127 0 13 chr13 3136972 3137051 -98736118 - AluJ/FRAM SINE Alu -9 303 226 1953 132 21 0 chr13 3137086 3137373 -98735796 + AluSx SINE Alu 2 294 -18 2014 149 0 0 chr13 3137550 3137839 -98735330 + AluSx SINE Alu 4 292 -20 201 279 128 0 chr13 3138143 3138229 -98734940 - MIR SINE MIR -74 188 92 2569 77 0 0 chr13 3138358 3138668 -98734501 - AluY SINE Alu -1 310 1 182 302 38 0 chr13 3138906 3138959 -98734210 - L2 LINE L2 -200 3072 3018 21 71 0 0 chr13 3139160 3139202 -98733967 + AT_rich Low_complexity Low_complexity 1 42 0 876 206 11 17 chr13 3139265 3139440 -98733729 + FRAM SINE Alu 1 173 -3 7193 56 8 0 chr13 3139445 3139673 -98733496 + L1PA7 LINE L1 4771 4996 -1158 2333 64 0 48 chr13 3139673 3139984 -98733185 + AluY SINE Alu 1 296 -15 7193 56 8 0 chr13 3139984 3141136 -98732033 + L1PA7 LINE L1 4996 6154 0 2393 83 0 13 chr13 3141141 3141442 -98731727 + AluSp SINE Alu 1 297 -16 216 273 57 23 chr13 3141737 3141825 -98731344 + L2 LINE L2 1177 1267 -2047 25 0 0 0 chr13 3141825 3141850 -98731319 + AT_rich Low_complexity Low_complexity 1 25 0 7667 25 1 225 chr13 3141850 3143224 -98729945 - SVA Other Other 0 1386 321 513 158 0 0 chr13 3143364 3143446 -98729723 + AluSg/x SINE Alu 218 299 -11 5630 146 44 29 chr13 3143577 3144828 -98728341 - L1MA9 LINE L1 0 6312 5043 306 143 0 0 chr13 3144826 3144875 -98728294 + L1MA9 LINE L1 4989 5037 -1109 * 638 311 65 26 chr13 3144878 3145296 -98727873 + L2 LINE L2 1033 1466 -1848 5072 84 1 3 chr13 3145439 3146108 -98727061 - THE1A-int LTR MaLR -912 668 1 2729 86 11 0 chr13 3146108 3146459 -98726710 - THE1A LTR MaLR 0 355 1 331 244 118 16 chr13 3146480 3146607 -98726562 - L2 LINE L2 -940 2374 2235 2190 168 7 30 chr13 3146734 3147138 -98726031 + MSTD LTR MaLR 2 396 0 831 216 52 43 chr13 3147365 3147595 -98725574 - MLT1A1 LTR MaLR 0 365 134 296 95 24 0 chr13 3147595 3147637 -98725532 - MLT1A1 LTR MaLR 0 457 415 1449 83 0 0 chr13 3147637 3147830 -98725339 + L1MA2 LINE L1 6112 6304 0 1165 180 50 116 chr13 3147850 3148212 -98724957 - MLT1A1 LTR MaLR -25 340 3 2846 192 33 6 chr13 3148228 3148748 -98724421 - MLT1A1-int LTR MaLR -6 1729 1196 1025 218 92 23 chr13 3148750 3149012 -98724157 - MLT2B3 LTR ERVL -237 317 38 419 171 12 37 chr13 3149043 3149125 -98724044 - MLT2B3 LTR ERVL -472 82 3 * 912 121 7 7 chr13 3149125 3149265 -98723904 - MLT1A1 LTR MaLR -225 140 1 2207 109 3 13 chr13 3149410 3149714 -98723455 - AluSx SINE Alu -11 301 1 918 198 0 0 chr13 3149774 3149936 -98723233 - FAM SINE Alu -13 162 1 21 36 0 0 chr13 3150059 3150087 -98723082 + AT_rich Low_complexity Low_complexity 1 28 0 327 311 0 0 chr13 3150455 3150545 -98722624 - L1MC4 LINE L1 -1339 6703 6614 204 217 0 0 chr13 3150557 3150603 -98722566 + (TA)n Simple_repeat Simple_repeat 2 47 0 236 233 0 17 chr13 3150606 3150666 -98722503 - L1MCa LINE L1 -4362 2064 2006 260 167 93 0 chr13 3150711 3150765 -98722404 - L1MCa LINE L1 -4362 2064 2006 567 212 24 12 chr13 3150776 3150941 -98722228 + (CATATA)n Simple_repeat Simple_repeat 2 168 0 232 200 0 0 chr13 3150948 3151003 -98722166 - L1MC4 LINE L1 -1339 6703 6649 326 292 0 0 chr13 3151030 3151119 -98722050 - L1MC4 LINE L1 -1339 6703 6615 250 296 23 0 chr13 3151144 3151232 -98721937 - L1MC4 LINE L1 -1339 6703 6614 238 309 0 0 chr13 3151285 3151374 -98721795 + L1MD3 LINE L1 6612 6668 -1327 254 311 0 15 chr13 3151375 3151507 -98721662 + (TATG)n Simple_repeat Simple_repeat 1 130 0 236 217 0 0 chr13 3151512 3151558 -98721611 + L1MC4 LINE L1 6658 6703 -1339 386 229 0 8 chr13 3151565 3151677 -98721492 + (TA)n Simple_repeat Simple_repeat 1 112 0 2361 80 0 13 chr13 3151677 3151979 -98721190 - AluSq SINE Alu -15 298 1 427 303 89 10 chr13 3152019 3152260 -98720909 - L1ME LINE L1 -301 5869 5613 2620 45 0 13 chr13 3153369 3153680 -98719489 - AluY SINE Alu -4 307 1 540 277 31 67 chr13 3155297 3155521 -98717648 + L1ME3A LINE L1 5691 5906 -264 820 210 112 33 chr13 3155568 3155615 -98717554 + MSTA LTR MaLR 1 43 -385 2240 130 16 24 chr13 3155615 3155992 -98717177 + THE1C LTR MaLR 1 374 -1 820 210 112 33 chr13 3155992 3156158 -98717011 + MSTA LTR MaLR 43 231 -197 * 1176 140 34 0 chr13 3156143 3156321 -98716848 + MSTA LTR MaLR 245 428 0 9752 167 16 4 chr13 3156321 3157950 -98715219 + MSTA-int LTR MaLR 1 1649 -2 1992 148 154 0 chr13 3157958 3158329 -98714840 + MSTA LTR MaLR 1 428 0 248 203 27 0 chr13 3159442 3159516 -98713653 + CT-rich Low_complexity Low_complexity 3 78 0 450 0 0 0 chr13 3159736 3159786 -98713383 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 3473 156 84 90 chr13 3160147 3160594 -98712575 + L1MDa LINE L1 944 1392 -5148 2134 127 0 13 chr13 3160594 3160902 -98712267 + AluSx SINE Alu 1 304 -8 3473 156 84 90 chr13 3160902 3160923 -98712246 + L1MDa LINE L1 1392 1412 -5128 2268 107 0 0 chr13 3160923 3161223 -98711946 + AluSc SINE Alu 1 300 -9 3473 156 84 90 chr13 3161223 3161399 -98711770 + L1MDa LINE L1 1412 1588 -4952 1877 101 0 0 chr13 3161399 3161669 -98711500 + AluSg SINE Alu 36 305 0 3473 156 84 90 chr13 3161669 3161951 -98711218 + L1MDa LINE L1 1588 1869 -4671 2478 87 0 0 chr13 3161951 3162250 -98710919 + AluSg SINE Alu 1 299 -11 3473 156 84 90 chr13 3162250 3162345 -98710824 + L1MDa LINE L1 1869 1963 -4577 1752 174 0 0 chr13 3162345 3162673 -98710496 + AluJb SINE Alu 1 328 0 287 238 158 26 chr13 3162833 3162947 -98710222 - MLT1K LTR MaLR -358 230 87 609 239 15 27 chr13 3163038 3163207 -98709962 + L1M4 LINE L1 3455 3623 -2523 2021 127 27 0 chr13 3163207 3163499 -98709670 + AluSx SINE Alu 1 300 -12 609 239 15 27 chr13 3163499 3163551 -98709618 + L1M4 LINE L1 3623 3674 -2472 429 207 35 26 chr13 3163558 3163674 -98709495 - L1ME LINE L1 -374 5792 5676 2313 93 0 3 chr13 3163683 3163985 -98709184 - AluSg SINE Alu -9 301 1 1078 83 0 0 chr13 3163985 3164118 -98709051 - AluSc SINE Alu -176 133 1 1449 202 84 41 chr13 3164118 3164634 -98708535 - L1ME LINE L1 -676 5490 4998 2181 104 0 17 chr13 3164634 3164953 -98708216 + AluSq SINE Alu 1 314 0 1449 202 84 41 chr13 3164953 3164984 -98708185 - L1ME LINE L1 -1168 4998 4970 2521 57 0 0 chr13 3164984 3165281 -98707888 + AluY SINE Alu 1 297 -14 1449 202 84 41 chr13 3165281 3165292 -98707877 - L1ME LINE L1 -1196 4970 4961 2607 51 0 13 chr13 3165292 3165606 -98707563 + AluY SINE Alu 2 311 0 963 114 0 0 chr13 3166024 3166155 -98707014 + AluSg/x SINE Alu 162 292 -18 1253 211 29 76 chr13 3166158 3166302 -98706867 - L1ME LINE L1 -1214 4932 4783 1793 145 9 52 chr13 3166302 3166626 -98706543 - AluJb SINE Alu -2 310 1 1253 211 29 76 chr13 3166626 3166861 -98706308 - L1ME LINE L1 -1363 4783 4571 1717 143 48 0 chr13 3166861 3167133 -98706036 + AluJb SINE Alu 1 285 -27 2470 238 79 9 chr13 3167152 3167366 -98705803 - L1ME LINE L1 -2047 4099 3901 243 0 0 0 chr13 3167366 3167393 -98705776 + (TG)n Simple_repeat Simple_repeat 1 27 0 2470 238 79 9 chr13 3167393 3168090 -98705079 - L1ME LINE L1 -2245 3901 3124 2197 93 3 42 chr13 3168139 3168504 -98704665 + AluSp SINE Alu 1 313 0 2302 85 3 0 chr13 3168532 3168862 -98704307 + AluSp SINE Alu 1 331 0 445 271 119 96 chr13 3169956 3170138 -98703031 + MIR SINE MIR 5 197 -65 2203 99 0 3 chr13 3170138 3170446 -98702723 - AluSp SINE Alu 0 307 1 445 271 119 96 chr13 3170446 3170513 -98702656 + MIR SINE MIR 197 261 -1 1734 196 30 45 chr13 3170639 3171104 -98702065 - L1ME3A LINE L1 -83 6087 5630 1675 147 11 21 chr13 3171473 3171759 -98701410 + AluJb SINE Alu 1 283 -29 486 255 53 55 chr13 3171784 3172062 -98701107 + MIR SINE MIR 25 262 0 380 333 53 62 chr13 3172168 3172393 -98700776 + L2 LINE L2 3050 3272 0 2294 115 3 0 chr13 3172711 3173023 -98700146 + AluSq SINE Alu 1 313 0 290 298 95 18 chr13 3173143 3173311 -98699858 - L2 LINE L2 -122 3191 3011 * 343 252 134 39 chr13 3173310 3173437 -98699732 + L2 LINE L2 3175 3313 0 251 382 52 75 chr13 3173662 3174010 -98699159 + L2 LINE L2 2918 3257 -15 2335 92 3 13 chr13 3174223 3174529 -98698640 - AluSg SINE Alu -7 303 1 401 289 77 58 chr13 3174750 3174958 -98698211 + L3 LINE CR1 1366 1577 0 229 341 70 31 chr13 3175153 3175282 -98697887 + MIR SINE MIR 1 135 -73 2459 51 0 35 chr13 3175779 3176091 -98697078 + AluY SINE Alu 1 301 -10 22 35 0 0 chr13 3176968 3176997 -98696172 + AT_rich Low_complexity Low_complexity 1 29 0 265 339 36 9 chr13 3177188 3177300 -98695869 - MIR SINE MIR -141 121 7 2303 112 3 0 chr13 3177458 3177763 -98695406 - AluSx SINE Alu -6 306 1 332 238 62 0 chr13 3178581 3178661 -98694508 + L2 LINE L2 3224 3308 -5 428 301 75 40 chr13 3178857 3179056 -98694113 + MIR3 SINE MIR 2 207 -1 181 280 40 40 chr13 3179034 3179109 -98694060 + L2 LINE L2 3219 3293 -20 * 11979 91 21 1 chr13 3179132 3180898 -98692271 + L1PA7 LINE L1 8 1769 -4682 15126 88 39 0 chr13 3180898 3183158 -98690011 + L1PA7 LINE L1 3521 5861 -608 2039 92 0 26 chr13 3183158 3183429 -98689740 + AluSg SINE Alu 3 266 -44 15126 88 39 0 chr13 3183429 3184058 -98689111 + L1PA7 LINE L1 5861 6464 -5 11979 91 21 1 chr13 3184058 3184076 -98689093 + L1PA7 LINE L1 1769 1785 -4666 24 0 0 0 chr13 3185297 3185321 -98687848 + AT_rich Low_complexity Low_complexity 1 24 0 2415 66 0 20 chr13 3185681 3185983 -98687186 - AluY SINE Alu -15 296 1 779 150 72 26 chr13 3186034 3186227 -98686942 - LTR54 LTR ERV1 0 510 309 290 267 203 52 chr13 3186380 3186463 -98686706 + L2 LINE L2 2881 2950 -322 2362 94 0 0 chr13 3186463 3186771 -98686398 + AluSx SINE Alu 2 309 -3 290 267 203 52 chr13 3186771 3187021 -98686148 + L2 LINE L2 2950 3267 -5 336 286 68 42 chr13 3187228 3187420 -98685749 + MIR3 SINE MIR 3 199 -9 722 165 8 30 chr13 3188368 3188501 -98684668 - FLAM_C SINE Alu -3 130 1 1825 171 10 3 chr13 3189150 3189454 -98683715 - AluJo SINE Alu -6 306 1 29 47 0 0 chr13 3189455 3189498 -98683671 + AT_rich Low_complexity Low_complexity 1 43 0 1213 298 59 17 chr13 3189854 3190449 -98682720 + L1MEc LINE L1 31 650 -5746 2424 166 104 139 chr13 3190471 3190820 -98682349 + L1MC3 LINE L1 6757 7117 -668 259 209 15 15 chr13 3190820 3190887 -98682282 + MLT1F1 LTR MaLR 42 108 -459 2424 166 104 139 chr13 3190887 3191529 -98681640 + L1MC3 LINE L1 7117 7777 -8 238 301 21 11 chr13 3192091 3192184 -98680985 - MIR SINE MIR -149 113 20 23 0 0 0 chr13 3193469 3193492 -98679677 + AT_rich Low_complexity Low_complexity 1 23 0 2206 127 0 0 chr13 3194255 3194555 -98678614 + AluSx SINE Alu 1 300 -12 502 309 85 5 chr13 3194582 3194770 -98678399 - MIR SINE MIR -31 231 29 3309 174 28 38 chr13 3194849 3195611 -98677558 - L1MB8 LINE L1 -51 6127 5374 3430 158 64 97 chr13 3195963 3196887 -98676282 - MER21A LTR ERV1 -26 905 13 202 182 0 0 chr13 3196888 3196921 -98676248 + (TG)n Simple_repeat Simple_repeat 2 34 0 772 191 19 43 chr13 3196955 3197165 -98676004 - L1MC5 LINE L1 -498 7463 7259 21 0 0 0 chr13 3197222 3197243 -98675926 + AT_rich Low_complexity Low_complexity 1 21 0 230 143 24 0 chr13 3197274 3197316 -98675853 - L1MC5 LINE L1 -737 7224 7182 2245 120 3 0 chr13 3197431 3197731 -98675438 - AluSx SINE Alu -11 301 1 239 341 71 32 chr13 3197792 3197918 -98675251 + L2 LINE L2 3142 3272 0 1908 166 3 16 chr13 3198629 3198942 -98674227 + AluJb SINE Alu 1 309 -3 784 105 26 20 chr13 3198945 3199098 -98674071 + GA-rich Low_complexity Low_complexity 3 156 0 212 204 91 0 chr13 3200088 3200132 -98673037 - L2 LINE L2 -3 3310 3263 2152 145 75 91 chr13 3200208 3200339 -98672830 - Charlie1 DNA MER1_type -19 2742 2610 1564 184 3 51 chr13 3200339 3200468 -98672701 + AluJo SINE Alu 1 135 -177 2202 90 3 17 chr13 3200468 3200767 -98672402 - AluY SINE Alu -16 295 1 1564 184 3 51 chr13 3200767 3200952 -98672217 + AluJo SINE Alu 135 300 -12 2152 145 75 91 chr13 3200952 3201435 -98671734 - Charlie1 DNA MER1_type -151 2610 2138 425 244 9 26 chr13 3202024 3202139 -98671030 + MIR SINE MIR 148 260 -2 22 0 0 0 chr13 3202414 3202436 -98670733 + AT_rich Low_complexity Low_complexity 1 22 0 231 105 105 0 chr13 3202722 3202760 -98670409 + L2 LINE L2 2608 2649 -665 464 254 98 40 chr13 3202964 3203137 -98670032 - MIR SINE MIR -70 192 10 2162 129 10 3 chr13 3203398 3203701 -98669468 + AluSx SINE Alu 1 305 -7 26 50 0 0 chr13 3203701 3203741 -98669428 + AT_rich Low_complexity Low_complexity 1 40 0 188 316 18 0 chr13 3204088 3204145 -98669024 + MIR SINE MIR 203 260 -2 2382 74 0 7 chr13 3204432 3204729 -98668440 + AluY SINE Alu 1 295 -16 225 328 25 59 chr13 3206476 3206595 -98666574 + L2 LINE L2 2729 2843 -471 2393 96 0 6 chr13 3206598 3206912 -98666257 - AluSx SINE Alu 0 312 1 193 373 0 15 chr13 3207174 3207241 -98665928 + L2 LINE L2 3121 3186 -86 528 221 81 15 chr13 3207250 3207386 -98665783 - MIR SINE MIR -86 176 32 2278 115 0 3 chr13 3207556 3207861 -98665308 + AluSx SINE Alu 1 304 -8 187 161 0 0 chr13 3207882 3207913 -98665256 + L2 LINE L2 3028 3058 -255 2312 110 0 3 chr13 3208216 3208525 -98664644 - AluSg SINE Alu -2 308 1 757 231 53 36 chr13 3208729 3209032 -98664137 + L1MC4a LINE L1 5701 6017 -104 247 245 187 32 chr13 3209135 3209290 -98663879 + HAL1 LINE L1 2325 2503 -4 23 0 0 0 chr13 3209294 3209317 -98663852 + AT_rich Low_complexity Low_complexity 1 23 0 2123 130 0 13 chr13 3209317 3209632 -98663537 - AluSx SINE Alu -1 311 1 407 211 39 109 chr13 3210152 3210206 -98662963 + L2 LINE L2 3191 3247 -66 2543 53 0 0 chr13 3210206 3210510 -98662659 - AluY SINE Alu -7 304 1 407 211 39 109 chr13 3210510 3210583 -98662586 + L2 LINE L2 3247 3309 -4 247 254 97 53 chr13 3210592 3210706 -98662463 + MIR SINE MIR 96 214 -48 233 238 56 3 chr13 3210886 3211005 -98662164 - L1M LINE L1 -919 5384 5255 2067 138 3 0 chr13 3211008 3211313 -98661856 - AluJb SINE Alu -6 306 1 734 146 0 0 chr13 3211349 3211459 -98661710 - AluSq SINE Alu -13 300 191 929 99 0 0 chr13 3211459 3211580 -98661589 - AluSq SINE Alu -191 121 1 547 254 53 5 chr13 3211588 3211777 -98661392 + L1M4 LINE L1 5086 5283 -863 2214 149 0 0 chr13 3211834 3212142 -98661027 - AluSx SINE Alu -4 308 1 1480 198 37 13 chr13 3212403 3212896 -98660273 - MER74A LTR ERVL 0 558 7 2428 64 3 26 chr13 3212897 3213209 -98659960 + AluSc SINE Alu 5 309 0 236 299 83 49 chr13 3213231 3213327 -98659842 - MIR SINE MIR -103 159 55 2422 89 0 0 chr13 3213327 3213630 -98659539 + AluY SINE Alu 1 303 -8 236 299 83 49 chr13 3213630 3213677 -98659492 - MIR SINE MIR -207 55 11 24 32 0 0 chr13 3213701 3213732 -98659437 + AT_rich Low_complexity Low_complexity 1 31 0 239 353 15 0 chr13 3213878 3213946 -98659223 - MER91A DNA MER1_type -115 81 13 803 264 204 10 chr13 3214116 3214762 -98658407 - L2 LINE L2 -1 3312 2522 574 100 11 11 chr13 3214841 3214931 -98658238 + AluJ/FLAM SINE Alu 1 90 -222 2024 77 19 0 chr13 3214963 3215222 -98657947 - AluSx SINE Alu 0 312 49 1944 100 12 0 chr13 3215222 3215472 -98657697 - AluSx SINE Alu -58 254 1 216 97 0 0 chr13 3215488 3215519 -98657650 + (A)n Simple_repeat Simple_repeat 1 31 0 767 182 8 8 chr13 3216464 3216596 -98656573 - FLAM_A SINE Alu -1 132 1 557 172 49 8 chr13 3217090 3217212 -98655957 + FLAM_A SINE Alu 10 136 -6 22 0 0 0 chr13 3217353 3217375 -98655794 + AT_rich Low_complexity Low_complexity 1 22 0 496 129 0 9 chr13 3217426 3217644 -98655525 + AluJb SINE Alu 1 295 -17 1726 188 7 0 chr13 3217771 3218075 -98655094 - AluJo SINE Alu -6 306 1 768 270 95 18 chr13 3218086 3218412 -98654757 - Tigger8 DNA MER2_type -207 459 109 418 248 83 110 chr13 3218843 3219061 -98654108 + MER102a DNA MER1_type 106 317 -13 525 253 55 93 chr13 3219105 3219362 -98653807 + MER112 DNA MER1_type 8 254 -6 523 368 98 34 chr13 3219701 3220495 -98652674 + L2 LINE L2 951 1795 -1519 272 291 64 27 chr13 3220636 3220746 -98652423 + L2 LINE L2 3191 3304 -9 25 0 0 0 chr13 3220930 3220955 -98652214 + AT_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr13 3221313 3221363 -98651806 + AT_rich Low_complexity Low_complexity 1 50 0 635 286 134 6 chr13 3221767 3221844 -98651325 - L1MEc LINE L1 -4700 1714 1648 2001 134 0 0 chr13 3221844 3222143 -98651026 + AluSx SINE Alu 1 299 -13 635 286 134 6 chr13 3222143 3222564 -98650605 - L1MEc LINE L1 -4766 1648 1128 1195 267 71 72 chr13 3222659 3223248 -98649921 - L1MEc LINE L1 -4766 1630 1041 1947 141 0 0 chr13 3223248 3223546 -98649623 - AluSx SINE Alu -14 298 1 1195 267 71 72 chr13 3223546 3223814 -98649355 - L1MEc LINE L1 -5355 1041 774 259 224 20 0 chr13 3223824 3223873 -98649296 - AluJ/monomer SINE Alu -253 50 1 365 323 132 44 chr13 3223874 3224212 -98648957 - L1MEc LINE L1 -5711 685 283 2083 99 0 53 chr13 3224212 3224535 -98648634 - AluSx SINE Alu -6 306 1 365 323 132 44 chr13 3224535 3224719 -98648450 - L1MEc LINE L1 -6113 283 117 509 252 0 41 chr13 3224844 3224967 -98648202 + L2 LINE L2 3192 3309 -4 2426 112 25 6 chr13 3225173 3225529 -98647640 - THE1B LTR MaLR -1 363 1 3409 176 13 25 chr13 3225721 3226037 -98647132 + L1MB3 LINE L1 5511 5829 -354 2258 68 3 3 chr13 3226037 3226352 -98646817 + AluY SINE Alu 1 311 0 3409 176 13 25 chr13 3226352 3226706 -98646463 + L1MB3 LINE L1 5829 6173 -10 2122 100 0 3 chr13 3228328 3228618 -98644551 - AluSq SINE Alu -24 289 1 1128 154 9 23 chr13 3228845 3229065 -98644104 + MER47A DNA MER2_type 1 217 -149 1458 251 129 11 chr13 3229350 3229884 -98643285 + L1PA6 LINE L1 5323 5919 -235 * 4153 121 76 8 chr13 3229489 3230223 -98642946 + L1MA8 LINE L1 5505 6288 -3 198 274 74 42 chr13 3230324 3230419 -98642750 - MIR SINE MIR -52 210 113 409 297 113 5 chr13 3232293 3232488 -98640681 - MIR SINE MIR -23 239 24 323 229 12 169 chr13 3233396 3233562 -98639607 + MIR SINE MIR 117 256 -6 254 202 226 12 chr13 3233571 3233655 -98639514 + MIR SINE MIR 65 166 -96 347 48 0 0 chr13 3233658 3233700 -98639469 - 5S rRNA rRNA -79 42 1 512 314 34 64 chr13 3233805 3234009 -98639160 + MIR SINE MIR 62 259 -3 471 279 53 16 chr13 3234046 3234175 -98638994 - MIR SINE MIR -46 216 74 1653 141 50 7 chr13 3234175 3234474 -98638695 + AluSx SINE Alu 1 312 0 471 279 53 16 chr13 3234474 3234536 -98638633 - MIR SINE MIR -188 74 16 1026 173 10 19 chr13 3235321 3235529 -98637640 + AluJo SINE Alu 1 206 -106 1546 250 65 34 chr13 3235844 3236409 -98636760 - MLT1L LTR MaLR 0 615 33 293 266 237 7 chr13 3236812 3236949 -98636220 + MIR SINE MIR 14 176 -63 354 234 139 63 chr13 3236982 3237140 -98636029 - MLT1J2 LTR MaLR -18 432 263 250 188 187 0 chr13 3237237 3237310 -98635859 - MLT1J1 LTR MaLR -365 85 1 393 270 111 16 chr13 3237825 3238014 -98635155 + LTR16C LTR ERVL 285 491 0 1114 259 89 13 chr13 3238750 3239066 -98634103 + LTR16A LTR ERVL 111 450 0 441 271 170 37 chr13 3239359 3239577 -98633592 + L2 LINE L2 2458 2704 -610 371 357 51 5 chr13 3240136 3240332 -98632837 + L2 LINE L2 3106 3310 -3 363 319 28 14 chr13 3240894 3241038 -98632131 - MIR3 SINE MIR -30 178 33 1112 262 95 11 chr13 3242981 3243328 -98629841 + MLT1J LTR MaLR 1 376 -135 180 49 98 0 chr13 3243369 3243410 -98629759 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1698 111 111 0 chr13 3243439 3243701 -98629468 - MLT2D LTR ERVL -48 366 76 233 276 64 83 chr13 3243563 3243719 -98629450 - MLT1J2 LTR MaLR -399 225 73 * 327 321 170 51 chr13 3243719 3244171 -98628998 - L2 LINE L2 -573 2741 2236 268 261 43 22 chr13 3244565 3244657 -98628512 - L2 LINE L2 -955 2359 2266 391 292 28 14 chr13 3245290 3245434 -98627735 + MIR SINE MIR 109 254 -8 218 171 0 0 chr13 3246211 3246246 -98626923 + (ATG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr13 3246329 3246351 -98626818 + (TC)n Simple_repeat Simple_repeat 2 23 0 521 299 51 42 chr13 3246351 3246568 -98626601 - MIR SINE MIR -28 234 16 1590 123 7 45 chr13 3247529 3247821 -98625348 - L1MB3 LINE L1 -9 6174 5894 3210 157 16 53 chr13 3250496 3251141 -98622028 - L1MB3 LINE L1 -279 5904 5284 210 292 62 0 chr13 3251183 3251248 -98621921 - MIR SINE MIR -117 145 77 861 27 0 18 chr13 3251305 3251415 -98621754 - L1PA4 LINE L1 -3 6152 6045 6235 166 53 11 chr13 3251670 3252279 -98620890 + L1MA9 LINE L1 4022 4604 -1708 1963 141 7 0 chr13 3252279 3252584 -98620585 + AluSx SINE Alu 1 307 -5 6235 166 53 11 chr13 3252584 3254110 -98619059 + L1MA9 LINE L1 4604 6312 0 2184 162 23 88 chr13 3254138 3254443 -98618726 - MLT1C LTR MaLR 0 467 206 2068 129 0 7 chr13 3254443 3254753 -98618416 - AluSg SINE Alu -2 308 1 2184 162 23 88 chr13 3254753 3254947 -98618222 - MLT1C LTR MaLR -261 206 1 324 0 0 0 chr13 3255002 3255038 -98618131 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr13 3255206 3255228 -98617941 + AT_rich Low_complexity Low_complexity 1 22 0 2209 325 78 39 chr13 3255234 3257798 -98615371 - HERVL LTR ERVL -1465 4189 1469 628 279 32 36 chr13 3259114 3259365 -98613804 + MLT1J2 LTR MaLR 1 250 -200 1710 168 14 0 chr13 3259373 3259665 -98613504 - AluJb SINE Alu -16 296 1 200 327 37 28 chr13 3260807 3260914 -98612255 + MIR SINE MIR 7 114 -148 456 195 163 8 chr13 3260976 3261099 -98612070 - MER5A DNA MER1_type 0 189 48 290 118 97 65 chr13 3262838 3262931 -98610238 - MIR SINE MIR -55 207 112 1452 150 46 107 chr13 3264628 3264994 -98608175 + MER2 DNA MER2_type 1 344 0 986 204 88 19 chr13 3265357 3265617 -98607552 + L1ME1 LINE L1 5864 6141 -25 203 378 16 0 chr13 3265744 3265871 -98607298 + MIR SINE MIR 20 148 -114 517 198 90 9 chr13 3265969 3266080 -98607089 + L2 LINE L2 3191 3310 -3 3955 85 60 21 chr13 3266214 3266383 -98606786 + L1MA2 LINE L1 5660 5821 -483 1897 128 16 16 chr13 3266383 3266687 -98606482 + AluSc SINE Alu 1 304 -5 502 137 53 11 chr13 3266598 3267153 -98606016 + AluSp/q SINE Alu 215 313 0 3955 85 60 21 chr13 3266687 3267138 -98606031 + L1MA2 LINE L1 5821 6304 0 817 136 8 15 chr13 3267350 3267482 -98605687 + FLAM_C SINE Alu 12 142 -1 2469 63 0 7 chr13 3268288 3268587 -98604582 - AluSx SINE Alu -15 297 1 21 36 0 0 chr13 3268587 3268615 -98604554 + AT_rich Low_complexity Low_complexity 1 28 0 224 333 92 0 chr13 3268678 3268765 -98604404 + MIR SINE MIR 168 262 0 392 305 85 17 chr13 3268766 3268943 -98604226 + MIR SINE MIR 74 262 0 412 344 78 9 chr13 3269169 3269387 -98603782 - MIR SINE MIR -10 252 20 24 32 0 0 chr13 3269687 3269718 -98603451 + AT_rich Low_complexity Low_complexity 1 31 0 300 264 55 55 chr13 3270354 3270464 -98602705 - L2 LINE L2 -1 3271 3162 1410 179 71 24 chr13 3271769 3272109 -98601060 + MLT1C-int LTR MaLR 1015 1370 -1 1130 214 178 8 chr13 3272110 3272503 -98600666 + MLT1C LTR MaLR 1 460 -7 260 301 48 0 chr13 3273459 3273562 -98599607 + Charlie8 DNA MER1_type 35 142 -2275 27 29 0 0 chr13 3273914 3273948 -98599221 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr13 3273991 3274022 -98599147 + AT_rich Low_complexity Low_complexity 1 31 0 1994 168 7 3 chr13 3274749 3275058 -98598111 + AluSx SINE Alu 1 310 -2 1516 185 4 0 chr13 3275508 3275784 -98597385 + L1PB4 LINE L1 5868 6144 -12 363 298 79 0 chr13 3276872 3276986 -98596183 + L2 LINE L2 3190 3312 -1 1490 74 32 9 chr13 3277949 3278165 -98595004 + HUERS-P1 LTR ERV1 6043 6263 0 2095 56 70 0 chr13 3278165 3278452 -98594717 + LTR8 LTR ERV1 1 307 -384 658 115 0 0 chr13 3280116 3280220 -98592949 - MLT2B3 LTR ERVL -450 104 1 1030 168 25 20 chr13 3280269 3280466 -98592703 + AluJo SINE Alu 90 287 -25 1608 235 18 0 chr13 3280469 3280916 -98592253 + L1M4 LINE L1 4395 4849 -1297 1744 171 3 3 chr13 3280916 3281208 -98591961 - AluJo SINE Alu -20 292 1 1853 177 3 16 chr13 3281229 3281545 -98591624 - AluJb SINE Alu 0 312 1 389 271 25 0 chr13 3281545 3281667 -98591502 - L1M4 LINE L1 -1763 4383 4259 21 36 0 0 chr13 3283056 3283084 -98590085 + AT_rich Low_complexity Low_complexity 1 28 0 1170 187 5 0 chr13 3283084 3283298 -98589871 + Tigger2 DNA MER2_type 349 563 -2155 3503 120 31 55 chr13 3283309 3283984 -98589185 - L1MA3 LINE L1 -6 6299 5641 5545 151 19 34 chr13 3284165 3285674 -98587495 - L1MA3 LINE L1 -669 5636 4126 763 204 91 0 chr13 3285676 3285862 -98587307 + Tigger2 DNA MER2_type 555 757 -1961 1275 130 84 0 chr13 3285916 3286154 -98587015 + Tigger2 DNA MER2_type 2451 2708 -10 3098 256 66 49 chr13 3286163 3286741 -98586428 + L1MC4 LINE L1 6547 7114 -928 1722 179 0 10 chr13 3286741 3287032 -98586137 + AluJb SINE Alu 1 288 -24 3098 256 66 49 chr13 3287032 3287909 -98585260 + L1MC4 LINE L1 7114 8027 -15 1669 245 68 10 chr13 3287952 3288642 -98584527 + L1MC4 LINE L1 7012 7893 -149 318 67 0 0 chr13 3288709 3288754 -98584415 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 10688 42 10 1 chr13 3289163 3291254 -98581915 + L1PA4 LINE L1 4055 6150 -5 21 36 0 0 chr13 3291479 3291507 -98581662 + AT_rich Low_complexity Low_complexity 1 28 0 1592 188 65 0 chr13 3291905 3292197 -98580972 + AluJo SINE Alu 1 311 -1 356 167 0 13 chr13 3292213 3292291 -98580878 + HAL1 LINE L1 2129 2205 -302 321 222 161 61 chr13 3292316 3292496 -98580673 + HAL1 LINE L1 2309 2506 -1 710 281 134 15 chr13 3292519 3293104 -98580065 + L1MC4a LINE L1 5209 5492 -670 189 94 0 0 chr13 3293104 3293136 -98580033 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 710 281 134 15 chr13 3293136 3293173 -98579996 + L1MC4a LINE L1 5492 5523 -639 26 30 0 0 chr13 3293339 3293372 -98579797 + AT_rich Low_complexity Low_complexity 1 33 0 5705 128 18 0 chr13 3294043 3294231 -98578938 + L1PA15 LINE L1 4928 5111 -1054 1978 121 10 13 chr13 3294231 3294529 -98578640 + AluSq SINE Alu 1 297 -16 5705 128 18 0 chr13 3294529 3295574 -98577595 + L1PA15 LINE L1 5111 6165 0 377 129 194 0 chr13 3295669 3295762 -98577407 - L1M LINE L1 -916 5428 5318 2225 105 3 16 chr13 3295772 3296076 -98577093 - AluSx SINE Alu -2 310 11 1970 155 7 0 chr13 3296087 3296384 -98576785 - AluSx SINE Alu -13 299 1 564 209 24 67 chr13 3296388 3296438 -98576731 - L1M4 LINE L1 -816 5330 5279 2314 103 0 0 chr13 3296438 3296756 -98576413 - AluSq SINE Alu 0 313 1 564 209 24 67 chr13 3296756 3296844 -98576325 - L1M4 LINE L1 -867 5279 5189 2243 86 14 0 chr13 3296844 3297185 -98575984 - AluSp SINE Alu 0 346 2 564 209 24 67 chr13 3297185 3297297 -98575872 - L1M4 LINE L1 -957 5189 5089 335 259 0 86 chr13 3298439 3298555 -98574614 - MIR SINE MIR -70 192 87 1042 133 24 30 chr13 3298626 3298825 -98574344 - AluSg/x SINE Alu 0 312 133 353 259 12 0 chr13 3298943 3299028 -98574141 - MIR SINE MIR -121 141 56 2158 122 14 0 chr13 3299175 3299471 -98573698 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr13 3299546 3299568 -98573601 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr13 3300734 3300757 -98572412 + AT_rich Low_complexity Low_complexity 1 23 0 280 250 125 11 chr13 3301015 3301103 -98572066 - MIR SINE MIR -16 246 149 2230 224 48 21 chr13 3301203 3301656 -98571513 + L1ME2 LINE L1 5536 6173 -161 297 0 0 0 chr13 3301656 3301689 -98571480 + (TG)n Simple_repeat Simple_repeat 2 34 0 2230 224 48 21 chr13 3301689 3301856 -98571313 + L1ME2 LINE L1 6173 6334 0 2474 81 0 0 chr13 3301985 3302295 -98570874 + AluY SINE Alu 1 310 -1 22 0 0 0 chr13 3302295 3302317 -98570852 + AT_rich Low_complexity Low_complexity 1 22 0 386 280 74 16 chr13 3302355 3302544 -98570625 - L1ME LINE L1 -307 5814 5615 318 277 152 0 chr13 3302970 3303082 -98570087 - MIR SINE MIR -10 252 124 219 326 0 35 chr13 3303261 3303347 -98569822 - L2 LINE L2 0 3272 3190 2206 100 7 0 chr13 3303685 3304029 -98569140 - AluSq SINE Alu 0 346 1 1306 219 4 0 chr13 3304460 3304706 -98568463 - AluJo SINE Alu -27 285 39 197 321 19 0 chr13 3304996 3305049 -98568120 + L2 LINE L2 3138 3191 -81 2013 182 68 0 chr13 3305224 3305609 -98567560 + LTR57 LTR ERVL 1 411 0 25 0 0 0 chr13 3309334 3309359 -98563810 + GC_rich Low_complexity Low_complexity 1 25 0 693 229 156 29 chr13 3310436 3310641 -98562528 + MIR SINE MIR 11 241 -21 1904 106 0 109 chr13 3310841 3311180 -98561989 - AluSc SINE Alu -5 304 3 22 35 0 0 chr13 3311457 3311486 -98561683 + AT_rich Low_complexity Low_complexity 1 29 0 2488 87 0 0 chr13 3311615 3311925 -98561244 + AluSg SINE Alu 1 310 0 187 93 186 0 chr13 3312149 3312192 -98560977 + MIR SINE MIR 116 166 -96 225 229 0 0 chr13 3312714 3312762 -98560407 - L2 LINE L2 -2 3270 3223 468 299 34 0 chr13 3313387 3313534 -98559635 - MIR SINE MIR -42 220 69 718 221 126 26 chr13 3314548 3314738 -98558431 - MIR SINE MIR -18 244 36 255 31 0 0 chr13 3315037 3315069 -98558100 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 333 0 0 0 chr13 3315068 3315105 -98558064 + (CA)n Simple_repeat Simple_repeat 1 37 0 221 281 0 18 chr13 3315469 3315526 -98557643 + CT-rich Low_complexity Low_complexity 1 56 0 2772 131 25 18 chr13 3316148 3316660 -98556509 - L1MA9 LINE L1 -22 6290 5775 231 198 31 42 chr13 3316664 3316760 -98556409 + (CATATA)n Simple_repeat Simple_repeat 3 97 0 1258 167 27 0 chr13 3316760 3316982 -98556187 - L1MA9 LINE L1 -524 5788 5561 * 3562 156 53 3 chr13 3316977 3317618 -98555551 - L1MA9 LINE L1 -1777 4369 3697 8010 33 0 1 chr13 3317620 3319145 -98554024 + L1PA4 LINE L1 4629 6152 -3 226 289 48 0 chr13 3319237 3319320 -98553849 + L1ME LINE L1 5807 5893 -228 * 708 226 6 24 chr13 3319312 3319480 -98553689 - L1MA9 LINE L1 -2433 3713 3549 383 285 7 35 chr13 3319767 3319911 -98553258 + MIR SINE MIR 67 206 -56 422 209 146 0 chr13 3320262 3320372 -98552797 - MER103 DNA DNA -38 128 3 494 250 196 0 chr13 3320436 3320584 -98552585 + MIR SINE MIR 25 201 -61 362 245 229 42 chr13 3321829 3322021 -98551148 + MIR SINE MIR 14 241 -21 611 278 52 32 chr13 3322551 3322803 -98550366 + MIR SINE MIR 5 261 -1 183 279 16 16 chr13 3322962 3323023 -98550146 - MER5B DNA MER1_type -36 142 82 2383 86 3 0 chr13 3323696 3323998 -98549171 + AluY SINE Alu 1 303 -8 21 36 0 0 chr13 3324789 3324817 -98548352 + AT_rich Low_complexity Low_complexity 1 28 0 218 116 93 0 chr13 3324897 3324940 -98548229 + L2 LINE L2 3267 3313 0 2024 157 3 3 chr13 3325062 3325374 -98547795 + AluJb SINE Alu 1 312 0 305 242 45 0 chr13 3326825 3326891 -98546278 - MLT1G1 LTR MaLR -12 578 510 854 241 82 53 chr13 3326929 3327269 -98545900 - MLT1G1 LTR MaLR -232 363 14 25 0 0 0 chr13 3327681 3327706 -98545463 + AT_rich Low_complexity Low_complexity 1 25 0 1498 175 7 52 chr13 3327881 3328190 -98544979 + AluJo SINE Alu 1 295 -17 631 263 65 11 chr13 3328742 3328928 -98544241 - MIR SINE MIR -6 256 61 459 312 201 26 chr13 3329206 3329594 -98543575 + L1ME4a LINE L1 5355 5813 -357 265 247 84 48 chr13 3329895 3330061 -98543108 + L1ME4a LINE L1 5939 6110 -11 2474 133 80 15 chr13 3331395 3331795 -98541374 - MSTA LTR MaLR -2 426 1 352 258 98 8 chr13 3332018 3332150 -98541019 - MLT1I LTR MaLR 0 409 266 448 191 32 0 chr13 3332666 3332760 -98540409 + MER5A DNA MER1_type 9 105 -84 1455 145 13 4 chr13 3332788 3333016 -98540153 - AluSg/x SINE Alu 0 312 83 427 238 196 7 chr13 3333060 3333203 -98539966 - MER5B DNA MER1_type -3 175 6 2280 91 30 0 chr13 3333728 3334026 -98539143 - AluSg SINE Alu -3 307 1 298 291 119 102 chr13 3338164 3338459 -98534710 - L2 LINE L2 -79 3193 2894 1499 183 4 11 chr13 3339015 3339277 -98533892 - AluJo SINE Alu -24 288 29 239 209 30 15 chr13 3339697 3339764 -98533405 + GA-rich Low_complexity Low_complexity 3 70 0 254 306 105 0 chr13 3339846 3339970 -98533199 + MIR SINE MIR 72 208 -54 217 206 95 111 chr13 3340214 3340340 -98532829 + MIR SINE MIR 39 162 -100 252 248 0 25 chr13 3340423 3340544 -98532625 + (TTA)n Simple_repeat Simple_repeat 1 118 0 212 250 18 0 chr13 3341102 3341158 -98532011 + GA-rich Low_complexity Low_complexity 1 57 0 298 353 45 6 chr13 3341973 3342129 -98531040 - L1ME LINE L1 -487 5634 5473 1926 107 11 4 chr13 3342262 3342534 -98530635 + AluSg SINE Alu 37 310 0 262 248 57 133 chr13 3342804 3343014 -98530155 + MLT1L LTR MaLR 200 393 -222 3585 211 91 49 chr13 3343023 3344625 -98528544 - L1MDa LINE L1 -4642 1898 2 1667 214 112 28 chr13 3344618 3344764 -98528405 - L1ME LINE L1 -350 5816 5684 * 2359 113 17 14 chr13 3344764 3345118 -98528051 - THE1A LTR MaLR 0 355 1 1667 214 112 28 chr13 3345118 3345753 -98527416 - L1ME LINE L1 -482 5684 4981 1919 142 3 23 chr13 3345813 3345979 -98527190 - AluSx SINE Alu -12 300 141 2237 94 0 10 chr13 3345979 3346277 -98526892 - AluY SINE Alu -14 297 3 1919 142 3 23 chr13 3346277 3346412 -98526757 - AluSx SINE Alu -171 141 5 1304 231 40 20 chr13 3346417 3346768 -98526401 - L1ME LINE L1 -1142 5004 4647 725 189 0 0 chr13 3346777 3346888 -98526281 - FLAM_A SINE Alu -12 130 20 2351 75 0 0 chr13 3346983 3347263 -98525906 + AluY SINE Alu 1 280 -31 945 216 165 27 chr13 3347357 3347732 -98525437 - L1ME LINE L1 -1540 4606 4180 282 73 0 0 chr13 3347735 3347776 -98525393 + (TG)n Simple_repeat Simple_repeat 1 41 0 353 287 25 16 chr13 3347796 3347918 -98525251 - L1MC4a LINE L1 -1210 6598 6476 1271 282 59 27 chr13 3348386 3348908 -98524261 - L1MC4a LINE L1 -342 5822 5301 1705 206 71 22 chr13 3349007 3349459 -98523710 + L1MC4 LINE L1 6821 7294 -748 440 300 123 0 chr13 3349466 3349636 -98523533 - LTR16A LTR ERVL -5 445 255 1821 180 137 98 chr13 3349813 3349957 -98523212 + L1MC4 LINE L1 7299 7436 -606 14821 119 24 74 chr13 3349957 3351343 -98521826 + Tigger1 DNA MER2_type 2 1206 -1212 2443 71 0 0 chr13 3351343 3351637 -98521532 - AluY SINE Alu -16 295 2 14821 119 24 74 chr13 3351637 3352793 -98520376 + Tigger1 DNA MER2_type 1206 2418 0 1821 180 137 98 chr13 3352793 3352865 -98520304 + L1MC4 LINE L1 7436 7504 -538 1688 163 0 0 chr13 3352865 3353123 -98520046 + AluJo SINE Alu 1 258 -54 1821 180 137 98 chr13 3353123 3353167 -98520002 + L1MC4 LINE L1 7504 7545 -497 219 69 0 0 chr13 3353167 3353196 -98519973 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 1821 180 137 98 chr13 3353196 3353434 -98519735 + L1MC4 LINE L1 7545 7772 -270 2229 123 0 0 chr13 3353434 3353744 -98519425 + AluSx SINE Alu 3 312 0 1821 180 137 98 chr13 3353744 3353958 -98519211 + L1MC4 LINE L1 7772 8042 0 2187 110 3 7 chr13 3353978 3354277 -98518892 + AluSx SINE Alu 4 301 -11 180 0 0 0 chr13 3354277 3354297 -98518872 + (TG)n Simple_repeat Simple_repeat 2 21 0 504 283 86 74 chr13 3354465 3354554 -98518615 - L1MC4a LINE L1 -1313 4833 4746 563 133 36 0 chr13 3354554 3354637 -98518532 - L1MC1 LINE L1 -9 6324 6239 504 283 86 74 chr13 3354637 3355025 -98518144 - L1MC4a LINE L1 -1400 4746 4364 2317 68 3 56 chr13 3355025 3355349 -98517820 - AluY SINE Alu -4 307 1 504 283 86 74 chr13 3355349 3355841 -98517328 - L1MC4a LINE L1 -1782 4364 3852 2350 107 0 0 chr13 3356120 3356420 -98516749 + AluSx SINE Alu 1 300 -12 183 311 98 30 chr13 3357265 3357397 -98515772 + MIR SINE MIR 120 260 -2 2005 121 25 0 chr13 3357528 3357810 -98515359 + AluSx SINE Alu 1 289 -23 211 247 26 26 chr13 3358406 3358421 -98514748 + (TA)n Simple_repeat Simple_repeat 1 15 -62 1820 167 0 3 chr13 3358421 3358708 -98514461 + AluJo SINE Alu 1 286 -26 211 247 26 26 chr13 3358708 3358769 -98514400 + (TA)n Simple_repeat Simple_repeat 14 77 0 24 0 0 0 chr13 3358859 3358883 -98514286 + AT_rich Low_complexity Low_complexity 1 24 0 247 367 83 35 chr13 3358891 3359120 -98514049 + MIR SINE MIR 9 248 -14 1101 235 202 19 chr13 3359331 3359928 -98513241 - L2 LINE L2 0 3313 2620 254 175 35 0 chr13 3359942 3359999 -98513170 - L1ME4a LINE L1 -81 6040 5982 26 0 0 0 chr13 3360217 3360243 -98512926 + AT_rich Low_complexity Low_complexity 1 26 0 524 314 53 19 chr13 3360525 3360789 -98512380 - L2 LINE L2 -453 2861 2589 216 0 0 0 chr13 3360924 3360948 -98512221 + (TCTCCC)n Simple_repeat Simple_repeat 2 25 0 6221 66 37 51 chr13 3361094 3362870 -98510299 + SVA Other Other 207 1385 -1 968 243 148 29 chr13 3362885 3363264 -98509905 - MLT1H LTR MaLR -53 496 73 2093 106 46 0 chr13 3363282 3363564 -98509605 - AluSx SINE Alu -15 297 3 535 260 264 21 chr13 3363597 3363885 -98509284 - L2 LINE L2 -691 2623 2266 1921 149 17 14 chr13 3364392 3364688 -98508481 - AluJo SINE Alu -15 297 1 443 122 28 84 chr13 3365260 3365342 -98507827 + L1MB7 LINE L1 5824 5900 -284 2169 121 0 13 chr13 3365342 3365648 -98507521 + AluSq SINE Alu 1 302 -11 443 122 28 84 chr13 3365648 3365672 -98507497 + L1MB7 LINE L1 5900 5924 -260 337 82 41 0 chr13 3365704 3365753 -98507416 - U6 snRNA snRNA -50 57 7 899 250 49 0 chr13 3365754 3366018 -98507151 + L1MB7 LINE L1 5908 6184 0 * 2683 185 92 112 chr13 3366006 3367371 -98505798 + L1MEc LINE L1 1619 3010 -3205 621 189 18 9 chr13 3367371 3367482 -98505687 + AluSg/x SINE Alu 187 298 -11 1266 203 117 4 chr13 3367485 3367681 -98505488 - AluJo SINE Alu -6 296 61 2108 139 0 0 chr13 3367681 3367990 -98505179 + AluSx SINE Alu 4 312 0 1266 203 117 4 chr13 3367990 3368059 -98505110 - AluJo SINE Alu -241 61 1 2683 185 92 112 chr13 3368059 3368333 -98504836 + L1MEc LINE L1 3012 3296 -2919 2357 64 3 0 chr13 3368536 3368853 -98504316 - AluY SINE Alu 0 318 1 239 313 62 12 chr13 3368860 3368940 -98504229 + MIR3 SINE MIR 110 193 -15 360 0 0 0 chr13 3369268 3369308 -98503861 + (TG)n Simple_repeat Simple_repeat 2 41 0 527 257 0 0 chr13 3369542 3369647 -98503522 + MIR SINE MIR 6 110 -152 2227 96 0 14 chr13 3369758 3370051 -98503118 + AluSq SINE Alu 1 289 -24 22 0 0 0 chr13 3372644 3372666 -98500503 + GC_rich Low_complexity Low_complexity 1 22 0 250 217 22 33 chr13 3372964 3373056 -98500113 + C-rich Low_complexity Low_complexity 6 96 0 1523 148 13 45 chr13 3373825 3374135 -98499034 - AluJb SINE Alu -12 300 1 553 198 54 9 chr13 3374578 3374689 -98498480 - MLT1C LTR MaLR -3 464 349 1703 115 23 4 chr13 3374695 3374955 -98498214 + MSTB LTR MaLR 2 266 -160 1018 142 32 0 chr13 3375179 3375334 -98497835 + MSTB LTR MaLR 267 426 0 622 226 13 27 chr13 3375339 3375588 -98497581 - MLT1C LTR MaLR -122 345 68 1912 149 3 3 chr13 3375588 3375889 -98497280 - AluSx SINE Alu -11 301 1 1391 99 0 5 chr13 3376102 3376293 -98496876 - AluSc SINE Alu -1 308 119 720 292 10 5 chr13 3376590 3376792 -98496377 - L2 LINE L2 -559 2755 2553 1916 119 7 46 chr13 3376804 3377106 -98496063 + AluSg SINE Alu 1 290 -20 2379 97 0 0 chr13 3377809 3378119 -98495050 + AluSg SINE Alu 1 310 0 2069 107 42 3 chr13 3378361 3378650 -98494519 + AluSx SINE Alu 1 300 -12 298 230 239 0 chr13 3378679 3378792 -98494377 + MER34 LTR ERV1 1 140 -402 * 1040 222 198 16 chr13 3378760 3379129 -98494040 + MER39 LTR ERV1 272 707 0 3409 144 26 42 chr13 3379898 3380523 -98492646 + MER49 LTR ERV1 9 623 -300 253 146 24 0 chr13 3380524 3380565 -98492604 + 5S rRNA rRNA 1 42 -79 * 1184 254 17 17 chr13 3380564 3380863 -98492306 + MER49 LTR ERV1 611 909 -14 1173 105 23 0 chr13 3380873 3381044 -98492125 - L1MA3 LINE L1 -1 6304 6130 1199 111 17 22 chr13 3381044 3381213 -98491956 - AluSg/x SINE Alu -22 288 119 574 148 0 0 chr13 3381213 3381294 -98491875 - AluJ/FRAM SINE Alu -11 301 221 6158 199 41 32 chr13 3381294 3381691 -98491478 - L1 LINE L1 -1761 5804 5412 1870 174 0 7 chr13 3381691 3381995 -98491174 - AluJb SINE Alu -10 302 1 6158 199 41 32 chr13 3381995 3382207 -98490962 - L1 LINE L1 -2153 5412 5204 2095 114 14 0 chr13 3382207 3382497 -98490672 - AluSq SINE Alu -19 294 1 6158 199 41 32 chr13 3382497 3383397 -98489772 - L1 LINE L1 -2361 5204 4314 2255 91 11 0 chr13 3383397 3383682 -98489487 - AluSp SINE Alu -24 289 2 6158 199 41 32 chr13 3383682 3383906 -98489263 - L1 LINE L1 -3251 4314 4094 2123 134 3 3 chr13 3383906 3384212 -98488957 - AluJb SINE Alu -6 306 1 6158 199 41 32 chr13 3384212 3384779 -98488390 - L1 LINE L1 -3471 4094 3438 857 140 13 7 chr13 3384796 3384946 -98488223 + L1M1 LINE L1 3009 3159 -4406 1133 84 0 39 chr13 3384950 3385105 -98488064 - AluY SINE Alu -162 149 1 16271 122 32 5 chr13 3385105 3387486 -98485683 - L1 LINE L1 -4611 2954 510 1057 139 47 142 chr13 3387509 3387783 -98485386 - L1MD3 LINE L1 -346 7649 7402 445 136 18 146 chr13 3387789 3387857 -98485312 - MLT1F1 LTR MaLR -449 118 68 2103 131 3 0 chr13 3387857 3388154 -98485015 + AluSx SINE Alu 1 298 -14 445 136 18 146 chr13 3388154 3388195 -98484974 - MLT1F1 LTR MaLR -499 68 23 586 195 8 25 chr13 3388196 3388314 -98484855 - L1MD3 LINE L1 -707 7288 7173 2406 67 3 0 chr13 3388490 3388787 -98484382 - AluY SINE Alu -13 298 1 335 307 79 8 chr13 3389259 3389386 -98483783 + L2 LINE L2 3178 3313 0 617 267 45 11 chr13 3389623 3389799 -98483370 + MIR SINE MIR 5 186 -76 243 0 0 0 chr13 3389814 3389841 -98483328 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1766 121 25 32 chr13 3389845 3390125 -98483044 - AluSx SINE Alu -33 279 2 303 282 23 8 chr13 3390134 3390265 -98482904 + (TA)n Simple_repeat Simple_repeat 1 133 0 23 0 0 0 chr13 3390365 3390388 -98482781 + AT_rich Low_complexity Low_complexity 1 23 0 207 151 38 0 chr13 3390654 3390707 -98482462 + A-rich Low_complexity Low_complexity 3 57 0 698 211 121 16 chr13 3390714 3390970 -98482199 - LTR50 LTR ERVL -506 289 7 370 238 76 9 chr13 3390974 3391129 -98482040 - L1MC/D LINE L1 -344 5818 5668 219 260 20 0 chr13 3391304 3391354 -98481815 + L2 LINE L2 3208 3258 -14 2435 70 0 10 chr13 3391646 3391948 -98481221 + AluSg SINE Alu 1 299 -11 1617 141 72 10 chr13 3391959 3392249 -98480920 + AluJo SINE Alu 1 308 -4 2243 112 3 0 chr13 3392249 3392553 -98480616 + AluSx SINE Alu 1 305 -7 487 131 30 0 chr13 3392565 3392664 -98480505 + GA-rich Low_complexity Low_complexity 2 103 0 1839 135 33 30 chr13 3393676 3393979 -98479190 + AluSx SINE Alu 1 304 -8 2447 58 3 10 chr13 3394180 3394489 -98478680 + AluY SINE Alu 1 307 -4 393 241 97 14 chr13 3394788 3394933 -98478236 - L1MC4 LINE L1 -1065 6977 6821 1271 286 102 42 chr13 3395032 3395554 -98477615 + L1MC4a LINE L1 5301 5822 -342 353 287 25 16 chr13 3396022 3396144 -98477025 + L1MC4a LINE L1 6476 6598 -1210 282 73 0 0 chr13 3396164 3396205 -98476964 + (CA)n Simple_repeat Simple_repeat 1 41 0 945 216 165 27 chr13 3396208 3396583 -98476586 + L1M4 LINE L1 4180 4606 -1540 2351 75 0 0 chr13 3396677 3396957 -98476212 - AluY SINE Alu -31 280 1 725 189 0 0 chr13 3397052 3397163 -98476006 + FLAM_A SINE Alu 20 130 -12 1279 234 40 20 chr13 3397172 3397523 -98475646 + L1M4 LINE L1 4647 5004 -1142 959 124 0 0 chr13 3397528 3397657 -98475512 + AluSq/x SINE Alu 5 133 -179 2240 93 3 7 chr13 3397663 3397965 -98475204 + AluY SINE Alu 3 303 -8 344 140 35 0 chr13 3398101 3398158 -98475011 + Alu SINE Alu 244 302 0 2184 98 7 3 chr13 3398186 3398481 -98474688 + AluSg SINE Alu 1 296 -14 217 330 96 52 chr13 3399190 3399535 -98473634 - L2 LINE L2 -1604 1710 1351 1777 142 38 10 chr13 3399772 3400060 -98473109 + AluJb SINE Alu 1 296 -16 244 288 166 31 chr13 3400136 3400299 -98472870 - MIR SINE MIR -22 240 56 272 200 40 0 chr13 3400837 3400887 -98472282 + L2 LINE L2 3183 3234 -38 289 347 21 11 chr13 3400994 3401089 -98472080 - L2 LINE L2 -35 3237 3142 471 209 209 12 chr13 3401253 3401425 -98471744 + MLT1G1 LTR MaLR 1 206 -389 1263 262 18 12 chr13 3401434 3401770 -98471399 + L1M4 LINE L1 4009 4346 -1800 5973 125 55 55 chr13 3402530 3402884 -98470285 - L1MA5A LINE L1 -2 6295 5943 2097 87 35 7 chr13 3402884 3403170 -98469999 - AluSq SINE Alu -19 294 1 5973 125 55 55 chr13 3403170 3403618 -98469551 - L1MA5A LINE L1 -354 5943 5497 1791 176 7 0 chr13 3403618 3403907 -98469262 + AluJo SINE Alu 1 291 -21 5973 125 55 55 chr13 3403907 3404483 -98468686 - L1MA5A LINE L1 -800 5497 4903 1283 81 17 17 chr13 3406611 3406783 -98466386 + AluY SINE Alu 1 172 -139 404 306 100 31 chr13 3407093 3407384 -98465785 - L2 LINE L2 -1120 2194 1884 1383 160 122 34 chr13 3407386 3407628 -98465541 + MER2 DNA MER2_type 1 275 -70 1638 174 31 7 chr13 3407628 3407921 -98465248 - AluJo SINE Alu -12 300 1 1383 160 122 34 chr13 3407921 3407972 -98465197 + MER2 DNA MER2_type 275 320 -25 2329 85 0 31 chr13 3408434 3408752 -98464417 + AluSq SINE Alu 6 313 0 197 402 10 0 chr13 3409214 3409316 -98463853 - L2 LINE L2 -2440 874 772 1597 163 41 37 chr13 3409576 3409870 -98463299 + AluJo SINE Alu 1 295 -17 445 308 123 22 chr13 3410197 3410424 -98462745 + MIR SINE MIR 3 252 -10 281 212 214 3 chr13 3410422 3410504 -98462665 + MIR SINE MIR 18 115 -93 * 1701 187 10 13 chr13 3411702 3412012 -98461157 + AluJo SINE Alu 1 309 -3 795 98 71 0 chr13 3412115 3412227 -98460942 - AluSg/x SINE Alu -16 296 177 2466 61 0 0 chr13 3412588 3412884 -98460285 + AluY SINE Alu 3 298 -13 465 296 192 34 chr13 3413055 3413613 -98459556 + L2 LINE L2 1443 2088 -1226 180 0 0 0 chr13 3415531 3415551 -98457618 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 219 204 102 0 chr13 3416451 3416500 -98456669 + MIR SINE MIR 127 180 -82 469 323 112 50 chr13 3416582 3417084 -98456085 + L2 LINE L2 2036 2568 -746 392 329 44 93 chr13 3417194 3417604 -98455565 + L2 LINE L2 2882 3271 -1 311 191 0 0 chr13 3418317 3418380 -98454789 + U13 snRNA snRNA 14 76 -28 859 214 40 40 chr13 3419675 3419951 -98453218 + L1MC5 LINE L1 7250 7525 -436 1597 164 0 64 chr13 3419955 3420253 -98452916 + AluJb SINE Alu 1 279 -33 342 0 0 0 chr13 3420257 3420295 -98452874 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3673 166 75 39 chr13 3420295 3420718 -98452451 + L1MB3 LINE L1 5143 5549 -634 2675 45 3 0 chr13 3420718 3421027 -98452142 + AluY SINE Alu 1 310 -1 3673 166 75 39 chr13 3421027 3421603 -98451566 + L1MB3 LINE L1 5549 6181 -2 717 213 80 82 chr13 3421608 3422022 -98451147 + L1MC5 LINE L1 7513 7925 -36 309 226 45 60 chr13 3422414 3422547 -98450622 - MLT1K LTR MaLR -317 271 141 1751 156 195 55 chr13 3422889 3423345 -98449824 - MLT2B1 LTR ERVL 0 520 1 262 265 0 15 chr13 3423715 3423783 -98449386 + MIR3 SINE MIR 118 184 -24 1687 185 26 0 chr13 3423880 3424160 -98449009 + L1MD3 LINE L1 7619 7911 -84 1578 138 116 8 chr13 3424160 3424428 -98448741 + AluJb SINE Alu 1 297 -15 1687 185 26 0 chr13 3424428 3424498 -98448671 + L1MD3 LINE L1 7911 7978 -17 871 199 137 26 chr13 3425772 3426361 -98446808 + L1ME1 LINE L1 5507 6148 -18 289 330 99 42 chr13 3426434 3426816 -98446353 - L2 LINE L2 -930 2384 1981 1916 105 72 4 chr13 3426855 3427132 -98446037 + AluSp SINE Alu 5 300 -13 212 341 59 29 chr13 3427177 3427347 -98445822 - L2 LINE L2 -1367 1947 1773 285 146 0 0 chr13 3428394 3428442 -98444727 + (TG)n Simple_repeat Simple_repeat 2 49 0 2011 94 0 14 chr13 3428443 3428719 -98444450 - AluSx SINE Alu -40 272 1 1488 208 83 48 chr13 3429456 3430028 -98443141 + L1ME2 LINE L1 5407 6027 -137 334 277 39 52 chr13 3430090 3430245 -98442924 + L1MC5 LINE L1 7774 7926 -35 2490 54 0 3 chr13 3430831 3431127 -98442042 + AluY SINE Alu 1 295 -16 2256 68 7 31 chr13 3431382 3431676 -98441493 + AluY SINE Alu 9 295 -16 676 153 59 9 chr13 3431978 3432149 -98441020 + Tigger3(Golem) DNA MER2_type 1 2995 -34 358 294 30 96 chr13 3432238 3432435 -98440734 - L1MC4a LINE L1 -1757 6051 5868 2346 87 7 13 chr13 3432449 3432758 -98440411 - AluSx SINE Alu -5 307 1 1250 228 27 54 chr13 3432817 3433225 -98439944 + L1MD1 LINE L1 3995 4391 -1755 2308 193 90 32 chr13 3433241 3433499 -98439670 + L1MD1 LINE L1 4897 5139 -1103 2141 65 0 14 chr13 3433499 3433775 -98439394 + AluY SINE Alu 35 306 -5 2308 193 90 32 chr13 3433775 3434732 -98438437 + L1MD1 LINE L1 5139 6231 -11 30 59 0 0 chr13 3436060 3436111 -98437058 + AT_rich Low_complexity Low_complexity 1 51 0 565 206 201 32 chr13 3436513 3436732 -98436437 - MLT1H LTR MaLR -20 529 274 663 200 145 0 chr13 3436732 3436877 -98436292 - MER58B DNA MER1_type 0 341 176 264 250 60 0 chr13 3436898 3436982 -98436187 + MIR SINE MIR 100 188 -74 258 351 36 40 chr13 3437360 3437582 -98435587 - L2 LINE L2 -208 3064 2844 2360 89 3 0 chr13 3437790 3438092 -98435077 + AluY SINE Alu 1 303 -8 308 179 0 0 chr13 3438229 3438285 -98434884 + Alu SINE Alu 243 298 -2 2159 102 7 3 chr13 3438312 3438607 -98434562 + AluSg SINE Alu 1 296 -14 239 335 96 47 chr13 3439316 3439659 -98433510 - L2 LINE L2 -1604 1710 1351 1780 142 38 10 chr13 3439896 3440184 -98432985 + AluJb SINE Alu 1 296 -16 254 288 166 31 chr13 3440260 3440423 -98432746 - MIR SINE MIR -22 240 56 239 234 0 39 chr13 3440895 3440972 -98432197 + T-rich Low_complexity Low_complexity 2 75 0 589 168 117 51 chr13 3441283 3441480 -98431689 + MER63A DNA MER1_type 1 210 0 290 340 30 11 chr13 3443498 3443763 -98429406 + L1MC/D LINE L1 4080 4349 -1797 297 263 19 58 chr13 3443785 3443941 -98429228 + HAL1b LINE L1 1187 1336 -12 318 304 89 14 chr13 3443980 3444194 -98428975 + L1MC/D LINE L1 4358 4587 -1559 243 287 56 84 chr13 3444201 3444595 -98428574 - MLT1I LTR MaLR -8 401 19 2275 83 0 0 chr13 3444666 3444943 -98428226 + AluY SINE Alu 17 293 -18 412 317 75 40 chr13 3444971 3445288 -98427881 + L1MC/D LINE L1 4733 5079 -1067 1896 127 53 13 chr13 3445493 3445793 -98427376 + AluSx SINE Alu 1 312 0 1377 237 40 21 chr13 3445874 3446250 -98426919 - LTR40a LTR ERVL 0 519 137 1023 98 147 18 chr13 3446267 3446430 -98426739 - AluSg SINE Alu -110 200 17 340 160 40 110 chr13 3446431 3446502 -98426667 - LTR40a LTR ERVL -423 96 32 2293 98 0 3 chr13 3446502 3446799 -98426370 + AluY SINE Alu 1 296 -15 340 160 40 110 chr13 3446799 3446827 -98426342 - LTR40a LTR ERVL -487 32 4 398 222 41 107 chr13 3446838 3446962 -98426207 + L1MC/D LINE L1 5302 5404 -2404 1963 119 4 0 chr13 3446962 3447240 -98425929 + AluSx SINE Alu 1 279 -33 398 222 41 107 chr13 3447240 3447358 -98425811 + L1MC/D LINE L1 5404 5528 -2280 2428 94 7 0 chr13 3447533 3447841 -98425328 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr13 3447997 3448019 -98425150 + AT_rich Low_complexity Low_complexity 1 22 0 1713 168 24 20 chr13 3448156 3448453 -98424716 + AluJo SINE Alu 1 298 -14 1764 172 10 3 chr13 3448480 3448783 -98424386 - AluJo SINE Alu -7 305 1 1823 159 34 0 chr13 3448822 3449117 -98424052 - AluSx SINE Alu -7 305 1 2244 86 0 22 chr13 3449119 3449433 -98423736 - AluY SINE Alu -1 310 4 305 284 80 11 chr13 3449451 3449539 -98423630 + MIR SINE MIR 19 112 -150 286 250 148 56 chr13 3449553 3449661 -98423508 - MIR SINE MIR -139 123 6 823 198 25 1 chr13 3449703 3449898 -98423271 - MLT1A2 LTR MaLR 0 390 190 2189 96 7 0 chr13 3450376 3450657 -98422512 + AluSg SINE Alu 1 283 -27 417 138 0 69 chr13 3451271 3451358 -98421811 + AluJ/FRAM SINE Alu 225 305 -7 772 180 0 14 chr13 3451380 3451519 -98421650 + FLAM_C SINE Alu 1 137 -6 1092 210 98 0 chr13 3453822 3454098 -98419071 + L1MC4 LINE L1 6821 7123 -919 206 300 7 79 chr13 3454545 3454669 -98418500 + L2 LINE L2 2869 2983 -289 2503 65 0 7 chr13 3454669 3454977 -98418192 - AluY SINE Alu -5 306 1 206 300 7 79 chr13 3454977 3454992 -98418177 + L2 LINE L2 2983 2998 -274 260 316 61 10 chr13 3455054 3455152 -98418017 + L2 LINE L2 3169 3271 -1 180 111 0 0 chr13 3455155 3455182 -98417987 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 254 301 96 0 chr13 3455230 3455303 -98417866 - L2 LINE L2 -38 3234 3155 21 82 0 0 chr13 3455333 3455382 -98417787 + AT_rich Low_complexity Low_complexity 1 49 0 372 278 137 50 chr13 3455864 3456227 -98416942 + L2 LINE L2 2260 2654 -660 509 282 57 62 chr13 3456227 3456436 -98416733 + MIR SINE MIR 4 211 -51 333 337 153 12 chr13 3456504 3456753 -98416416 + L2 LINE L2 2687 2970 -344 202 298 76 15 chr13 3456908 3457039 -98416130 + L2 LINE L2 3171 3309 -4 2148 126 0 16 chr13 3457078 3457388 -98415781 + AluSx SINE Alu 1 305 -7 1959 125 36 0 chr13 3457666 3457947 -98415222 + AluSq SINE Alu 1 291 -22 4136 225 121 44 chr13 3457951 3459307 -98413862 + L1M4c LINE L1 11 1525 -4859 2359 83 3 0 chr13 3459307 3459608 -98413561 + AluY SINE Alu 1 302 -9 4136 225 121 44 chr13 3459608 3459945 -98413224 + L1M4c LINE L1 1525 1835 -4549 594 180 109 52 chr13 3459955 3460097 -98413072 + L1M4c LINE L1 3085 3218 -3164 2186 95 14 14 chr13 3460097 3460391 -98412778 - AluSq SINE Alu -19 294 1 594 180 109 52 chr13 3460391 3460515 -98412654 + L1M4c LINE L1 3218 3366 -3016 357 192 0 14 chr13 3460514 3460587 -98412582 + L1MCa LINE L1 262 333 -6093 * 2259 112 3 13 chr13 3460587 3460901 -98412268 + AluSp SINE Alu 1 311 -2 2214 128 0 6 chr13 3460913 3461225 -98411944 + AluSx SINE Alu 3 312 0 441 192 23 0 chr13 3461225 3461355 -98411814 + GA-rich Low_complexity Low_complexity 2 134 0 303 140 18 0 chr13 3461366 3461423 -98411746 + L1MCa LINE L1 2128 2185 -4241 1048 151 22 45 chr13 3461424 3461603 -98411566 + AluJo SINE Alu 108 282 -30 300 180 0 0 chr13 3461643 3461704 -98411465 + L1MCa LINE L1 2171 2231 -4195 383 300 95 5 chr13 3461745 3462011 -98411158 + L2 LINE L2 2768 3049 -264 213 157 0 86 chr13 3462666 3462736 -98410433 + (TA)n Simple_repeat Simple_repeat 1 64 0 282 193 138 28 chr13 3462772 3462917 -98410252 - L1ME LINE L1 -280 5841 5681 2195 232 97 32 chr13 3463865 3464437 -98408732 - L1ME3A LINE L1 -76 6094 5458 2392 84 0 0 chr13 3464437 3464733 -98408436 - AluY SINE Alu -15 296 1 2195 232 97 32 chr13 3464733 3464931 -98408238 - L1ME3A LINE L1 -712 5458 5274 405 298 89 76 chr13 3465811 3466036 -98407133 - L2 LINE L2 -1 3271 3044 585 286 84 0 chr13 3466934 3467112 -98406057 + MIR SINE MIR 64 256 -6 2415 63 0 0 chr13 3467855 3468141 -98405028 + AluY SINE Alu 2 287 -24 185 0 40 0 chr13 3468148 3468173 -98404996 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 2278 92 3 3 chr13 3468353 3468648 -98404521 - AluSc SINE Alu -14 295 1 2281 104 0 0 chr13 3468746 3469045 -98404124 + AluSg SINE Alu 1 299 -11 2344 79 7 3 chr13 3469045 3469350 -98403819 + AluY SINE Alu 1 306 -5 1812 176 20 20 chr13 3469578 3469884 -98403285 + AluJb SINE Alu 1 306 -6 255 200 40 0 chr13 3470084 3470134 -98403035 + AluJb SINE Alu 76 127 -175 1685 155 3 59 chr13 3470800 3471122 -98402047 + AluJb SINE Alu 1 304 -8 228 240 147 0 chr13 3471246 3471321 -98401848 - MLT1E LTR MaLR -14 579 494 2026 141 0 0 chr13 3474010 3474308 -98398861 - AluSx SINE Alu -14 298 1 2010 115 3 34 chr13 3474626 3474921 -98398248 + AluSx SINE Alu 2 287 -25 2371 90 0 3 chr13 3477071 3477370 -98395799 + AluSx SINE Alu 1 298 -14 551 260 98 86 chr13 3477592 3478176 -98394993 - MER109 Unknown Unknown -643 1789 29 294 145 81 48 chr13 3478260 3478322 -98394847 - MER2 DNA MER2_type -271 74 11 * 1220 146 66 134 chr13 3478278 3478365 -98394804 + MER2 DNA MER2_type 11 102 -243 1786 153 7 0 chr13 3478365 3478639 -98394530 + AluJb SINE Alu 4 279 -33 1220 146 66 134 chr13 3478639 3478794 -98394375 + MER2 DNA MER2_type 102 224 -121 1938 89 16 104 chr13 3478794 3479110 -98394059 - AluSp SINE Alu -25 288 1 1220 146 66 134 chr13 3479110 3479216 -98393953 + MER2 DNA MER2_type 224 336 -9 598 161 0 0 chr13 3479262 3479349 -98393820 + 5S rRNA rRNA 3 89 -32 1935 155 24 0 chr13 3479583 3479880 -98393289 - AluSq SINE Alu -9 304 1 23 0 0 0 chr13 3479904 3479927 -98393242 + AT_rich Low_complexity Low_complexity 1 23 0 1024 111 0 21 chr13 3479960 3480104 -98393065 - AluJb SINE Alu -171 141 1 642 153 18 9 chr13 3480111 3480222 -98392947 - L1PA16 LINE L1 -22 6144 6033 280 114 0 0 chr13 3480223 3480267 -98392902 - L1PA16 LINE L1 -183 5983 5940 1694 167 31 3 chr13 3480276 3480569 -98392600 - AluJo SINE Alu -11 301 1 366 277 121 14 chr13 3480639 3480780 -98392389 - MER109 Unknown Unknown -1627 805 650 2492 61 0 26 chr13 3481026 3481337 -98391832 - AluY SINE Alu -8 303 1 356 235 70 35 chr13 3481413 3481645 -98391524 - MER109 Unknown Unknown -1139 1293 2 2079 119 36 3 chr13 3481718 3482020 -98391149 - AluSx SINE Alu 0 312 1 1917 149 0 3 chr13 3482096 3482385 -98390784 - AluJb SINE Alu -24 288 1 347 263 50 0 chr13 3482389 3482469 -98390700 + L2 LINE L2 3185 3268 -4 274 274 63 11 chr13 3482498 3482593 -98390576 + HAL1b LINE L1 1193 1292 -56 723 162 6 22 chr13 3482712 3482878 -98390291 - MSTC LTR MaLR -215 150 4 887 254 44 20 chr13 3482880 3483128 -98390041 + L1MDa LINE L1 664 917 -5623 438 259 9 0 chr13 3483689 3483801 -98389368 + MLT2B1 LTR ERVL 1 113 -407 1109 209 45 29 chr13 3483926 3484366 -98388803 + MER74A LTR ERVL 1 545 -13 13878 118 47 8 chr13 3484706 3486505 -98386664 - Tigger1 DNA MER2_type -219 2199 303 204 40 0 0 chr13 3486505 3486530 -98386639 + (GA)n Simple_repeat Simple_repeat 2 26 0 13878 118 47 8 chr13 3486530 3486846 -98386323 - Tigger1 DNA MER2_type -2115 303 1 4426 142 25 0 chr13 3490876 3491566 -98381603 - L1MC1 LINE L1 -5 6328 5622 425 263 53 41 chr13 3491594 3491765 -98381404 + MER5B DNA MER1_type 4 176 -2 28 48 0 0 chr13 3491876 3491918 -98381251 + AT_rich Low_complexity Low_complexity 1 42 0 189 171 0 0 chr13 3491918 3491953 -98381216 + (TG)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr13 3491953 3491976 -98381193 + (GA)n Simple_repeat Simple_repeat 2 24 0 1635 149 0 59 chr13 3491976 3492120 -98381049 - AluJo SINE Alu -40 272 152 1995 102 0 39 chr13 3492120 3492403 -98380766 - AluSg SINE Alu -19 291 20 1635 149 0 59 chr13 3492403 3492547 -98380622 - AluJo SINE Alu -160 152 1 2276 81 0 3 chr13 3492960 3493284 -98379885 - AluSg SINE Alu 0 323 1 224 149 21 0 chr13 3493662 3493709 -98379460 + C-rich Low_complexity Low_complexity 1 48 0 639 221 63 31 chr13 3494517 3494739 -98378430 - L1ME LINE L1 -357 5764 5536 711 176 65 41 chr13 3495146 3495316 -98377853 + MLT1B LTR MaLR 4 177 -213 203 307 31 47 chr13 3495428 3495555 -98377614 - MIR3 SINE MIR -69 139 15 377 269 0 62 chr13 3495910 3496055 -98377114 + L2 LINE L2 3084 3219 -94 809 128 0 0 chr13 3496055 3496164 -98377005 - FLAM_A SINE Alu -12 130 22 285 322 58 0 chr13 3496164 3496251 -98376918 + L2 LINE L2 3214 3305 -8 2394 63 0 31 chr13 3497039 3497358 -98375811 - AluY SINE Alu -2 309 1 1865 136 27 30 chr13 3497548 3497849 -98375320 - AluSx SINE Alu -12 300 1 1591 117 4 17 chr13 3498563 3498794 -98374375 - AluSx SINE Alu -84 228 1 365 171 37 0 chr13 3498794 3498876 -98374293 - L1MB7 LINE L1 -276 5908 5824 23263 108 14 46 chr13 3498973 3502666 -98370503 - L1PA8A LINE L1 -441 5690 2156 1994 97 76 7 chr13 3502666 3502955 -98370214 - AluSc SINE Alu 0 309 1 23263 108 14 46 chr13 3502955 3503501 -98369668 - L1PA8A LINE L1 -3975 2156 1594 1869 182 118 58 chr13 3503514 3504031 -98369138 - LTR10A LTR ERV1 -61 548 1 878 157 57 0 chr13 3504219 3504378 -98368791 + FRAM SINE Alu 1 163 -13 2625 175 127 33 chr13 3504378 3504723 -98368446 + L1ME3 LINE L1 1079 1390 -5036 2520 68 0 0 chr13 3504723 3505018 -98368151 - AluY SINE Alu -16 295 1 2625 175 127 33 chr13 3505018 3505823 -98367346 + L1ME3 LINE L1 1390 2433 -3993 5607 41 2 2 chr13 3505843 3506481 -98366688 + L1PA3 LINE L1 5518 6155 0 2209 243 55 29 chr13 3506502 3507199 -98365970 + L1ME3 LINE L1 2514 3228 -3198 198 0 0 0 chr13 3507547 3507569 -98365600 + (TG)n Simple_repeat Simple_repeat 2 23 0 809 280 101 28 chr13 3507572 3508346 -98364823 + L1ME3 LINE L1 4908 5854 -588 2207 129 0 0 chr13 3508346 3508655 -98364514 + AluSx SINE Alu 1 309 -3 809 280 101 28 chr13 3508655 3508931 -98364238 + L1ME3 LINE L1 5854 6108 -334 2731 278 104 21 chr13 3508950 3509847 -98363322 + L1M4b LINE L1 20 990 -5869 1866 186 24 34 chr13 3509889 3510298 -98362871 + L1M4b LINE L1 1144 1548 -5311 2640 250 152 12 chr13 3511647 3512567 -98360602 - L2 LINE L2 -1064 2250 1202 17639 35 8 1 chr13 3512567 3514692 -98358477 - L1P2 LINE L1 -2074 4072 1932 11017 30 9 4 chr13 3514671 3516235 -98356934 + L1P2 LINE L1 4086 5654 -501 * 4969 168 43 12 chr13 3516339 3517321 -98355848 - L1 LINE L1 -1140 5006 3995 185 218 73 18 chr13 3518873 3518928 -98354241 + MIR SINE MIR 99 156 -106 2177 108 7 0 chr13 3519203 3519333 -98353836 + AluSx SINE Alu 1 129 -183 2198 104 0 7 chr13 3519333 3519641 -98353528 + AluSg SINE Alu 1 306 -4 2177 108 7 0 chr13 3519641 3519806 -98353363 + AluSx SINE Alu 129 298 -14 24 0 0 0 chr13 3520717 3520741 -98352428 + AT_rich Low_complexity Low_complexity 1 24 0 998 263 173 28 chr13 3521019 3521448 -98351721 - L2 LINE L2 -2 3311 2821 327 282 29 33 chr13 3521674 3521855 -98351314 - MIR SINE MIR -14 248 3 22 0 0 0 chr13 3523613 3523635 -98349534 + AT_rich Low_complexity Low_complexity 1 22 0 417 367 69 12 chr13 3523644 3523889 -98349280 - MIR SINE MIR -1 261 3 288 104 21 21 chr13 3524656 3524704 -98348465 - MIR3 SINE MIR -12 196 149 205 156 0 0 chr13 3524946 3524978 -98348191 + CT-rich Low_complexity Low_complexity 1 32 0 340 186 0 0 chr13 3525287 3525346 -98347823 + AluJo SINE Alu 78 136 -166 2296 89 0 3 chr13 3525370 3525672 -98347497 + AluY SINE Alu 1 301 -10 237 338 0 25 chr13 3525681 3525761 -98347408 - L2 LINE L2 -236 3036 2959 1678 134 100 1 chr13 3526142 3526730 -98346439 - LTR34 LTR ERV1 0 699 1 2400 70 3 0 chr13 3527227 3527526 -98345643 - AluY SINE Alu -11 300 1 21 0 0 0 chr13 3527683 3527704 -98345465 + AT_rich Low_complexity Low_complexity 1 21 0 2062 133 0 22 chr13 3529394 3529710 -98343459 + AluJb SINE Alu 1 309 -3 234 307 130 102 chr13 3531280 3531326 -98341843 + L2 LINE L2 2972 3015 -257 1513 164 18 94 chr13 3531326 3531479 -98341690 + AluJo SINE Alu 1 104 -208 2290 93 10 7 chr13 3531479 3531780 -98341389 + AluSg SINE Alu 1 302 -8 1513 164 18 94 chr13 3531780 3531975 -98341194 + AluJo SINE Alu 104 312 0 234 307 130 102 chr13 3531975 3532221 -98340948 + L2 LINE L2 3015 3272 0 1628 183 7 39 chr13 3532258 3532564 -98340605 + AluJb SINE Alu 1 296 -16 2304 101 0 3 chr13 3533298 3533596 -98339573 - AluSq SINE Alu -16 297 1 22 0 0 0 chr13 3533730 3533752 -98339417 + AT_rich Low_complexity Low_complexity 1 22 0 1721 103 0 0 chr13 3535147 3535361 -98337808 - AluSx SINE Alu -87 225 12 1608 160 106 47 chr13 3536528 3536935 -98336234 + LTR10A LTR ERV1 118 548 -61 718 204 91 17 chr13 3537054 3537230 -98335939 + AluJo SINE Alu 123 311 -1 2373 78 0 0 chr13 3538061 3538357 -98334812 + AluY SINE Alu 1 296 -15 301 295 0 0 chr13 3540282 3540360 -98332809 + L2 LINE L2 1480 1557 -1757 1518 224 3 13 chr13 3540360 3540663 -98332506 - AluJb SINE Alu -11 301 2 439 201 187 0 chr13 3541097 3541236 -98331933 + L1MC4 LINE L1 6945 7109 -933 774 218 73 28 chr13 3541247 3541495 -98331674 + L1MC4 LINE L1 7276 7534 -508 219 358 49 0 chr13 3541667 3541748 -98331421 - L2 LINE L2 0 3272 3188 7250 123 12 6 chr13 3541975 3543439 -98329730 + Harlequin LTR ERV1 3209 6623 -26 1679 191 104 52 chr13 3543467 3543986 -98329183 + LTR10A LTR ERV1 1 546 -63 260 169 46 0 chr13 3544000 3544065 -98329104 + L1P LINE L1 1594 1661 -4485 2346 104 0 0 chr13 3544680 3544979 -98328190 + AluSx SINE Alu 2 300 -12 1818 135 96 16 chr13 3545124 3545436 -98327733 + MER1B DNA MER1_type 1 337 0 252 218 0 36 chr13 3545915 3545970 -98327199 + L2 LINE L2 2588 2640 -674 947 175 67 127 chr13 3546016 3546387 -98326782 - Charlie4a DNA MER1_type -159 349 1 429 318 168 51 chr13 3546524 3546839 -98326330 + L2 LINE L2 2920 3271 -1 25 0 0 0 chr13 3546967 3546992 -98326177 + AT_rich Low_complexity Low_complexity 1 25 0 2353 56 0 0 chr13 3547056 3547341 -98325828 - AluY SINE Alu -26 285 1 2059 101 14 17 chr13 3548069 3548365 -98324804 + AluSg SINE Alu 1 295 -15 2505 49 3 0 chr13 3548486 3548793 -98324376 + AluY SINE Alu 1 308 -3 1821 60 80 90 chr13 3549215 3549516 -98323653 - AluSq SINE Alu -14 299 2 309 253 178 41 chr13 3550182 3550328 -98322841 + L1M2 LINE L1 1068 1233 -5616 431 250 64 57 chr13 3551481 3551621 -98321548 + MIR SINE MIR 25 167 -41 394 282 114 13 chr13 3551629 3551778 -98321391 + MIR SINE MIR 93 256 -6 346 289 132 0 chr13 3552222 3552343 -98320826 + L2 LINE L2 3136 3272 0 189 330 44 11 chr13 3554347 3554438 -98318731 - L2 LINE L2 -6 3307 3214 608 244 73 29 chr13 3554580 3554895 -98318274 - Charlie7 DNA MER1_type -158 2454 2126 285 203 61 95 chr13 3554963 3555086 -98318083 - L1MC5 LINE L1 -114 7847 7728 2039 150 0 0 chr13 3555086 3555108 -98318061 - AluSx SINE Alu -5 307 286 201 74 0 0 chr13 3555108 3555135 -98318034 + (TG)n Simple_repeat Simple_repeat 2 28 0 2039 150 0 0 chr13 3555135 3555419 -98317750 - AluSx SINE Alu -25 287 1 285 203 61 95 chr13 3555419 3555443 -98317726 - L1MC5 LINE L1 -233 7728 7705 388 268 92 83 chr13 3557027 3557225 -98315944 - L1M2 LINE L1 -5579 1270 1066 3062 114 234 5 chr13 3557225 3557785 -98315384 + LTR12 LTR ERV1 1 688 0 388 268 92 83 chr13 3557785 3557922 -98315247 - L1M2 LINE L1 -5783 1066 932 875 177 0 111 chr13 3558117 3558360 -98314809 - MER20 DNA MER1_type -3 216 1 462 290 0 8 chr13 3558362 3558486 -98314683 + L2 LINE L2 3191 3313 0 1081 245 148 41 chr13 3558589 3558964 -98314205 - Charlie7 DNA MER1_type -1789 823 363 2303 102 3 3 chr13 3558964 3559267 -98313902 + AluSq SINE Alu 1 303 -10 1081 245 148 41 chr13 3559267 3559471 -98313698 - Charlie7 DNA MER1_type -2249 363 182 2233 119 13 0 chr13 3559501 3559804 -98313365 - AluSq SINE Alu -6 307 1 219 25 75 0 chr13 3559817 3559857 -98313312 + (TA)n Simple_repeat Simple_repeat 2 44 0 554 235 20 32 chr13 3560017 3560215 -98312954 + MLT1J2 LTR MaLR 1 194 -215 324 105 0 79 chr13 3560337 3560413 -98312756 + MLT1J2 LTR MaLR 381 450 0 2160 119 0 7 chr13 3560911 3561221 -98311948 - AluSq SINE Alu -5 308 1 23 33 0 0 chr13 3564010 3564040 -98309129 + AT_rich Low_complexity Low_complexity 1 30 0 887 105 0 16 chr13 3564065 3564189 -98308980 + FLAM_C SINE Alu 11 132 -11 2481 62 0 10 chr13 3564324 3564631 -98308538 + AluY SINE Alu 1 304 -7 542 196 113 0 chr13 3564797 3564930 -98308239 - MSTB2 LTR MaLR -47 410 263 2224 88 0 17 chr13 3565085 3565379 -98307790 + AluSc SINE Alu 1 289 -20 421 336 29 14 chr13 3565579 3565719 -98307450 - L3 LINE CR1 -41 1536 1395 2380 52 0 14 chr13 3566135 3566466 -98306703 - AluY SINE Alu 0 327 1 267 273 189 23 chr13 3566476 3566608 -98306561 + L2 LINE L2 3159 3312 -1 391 220 88 0 chr13 3566806 3566897 -98306272 + L2 LINE L2 3215 3313 0 25 31 0 0 chr13 3566994 3567026 -98306143 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr13 3567148 3567169 -98306000 + AT_rich Low_complexity Low_complexity 1 21 0 2217 121 0 0 chr13 3567388 3567685 -98305484 + AluSx SINE Alu 1 297 -15 382 242 55 24 chr13 3568095 3568260 -98304909 - LTR41 LTR ERVL -5 768 599 546 245 77 0 chr13 3568793 3568936 -98304233 - LTR41 LTR ERVL -619 154 1 6721 74 5 1 chr13 3569121 3570198 -98302971 - L1PA8A LINE L1 -27 6104 5025 4953 56 27 21 chr13 3570548 3571178 -98301991 - L1PA5 LINE L1 -3 6151 5518 2679 174 139 36 chr13 3571198 3572004 -98301165 - L1MCa LINE L1 -3993 2964 1959 2530 68 0 0 chr13 3572004 3572300 -98300869 + AluY SINE Alu 1 296 -15 2679 174 139 36 chr13 3572300 3572387 -98300782 - L1MCa LINE L1 -4998 1959 1882 2301 131 8 6 chr13 3573209 3573561 -98299608 - L1MA5A LINE L1 -2 6295 5943 2197 63 39 7 chr13 3573563 3573848 -98299321 - AluSq SINE Alu -19 294 1 989 108 0 0 chr13 3573848 3573978 -98299191 - AluSq/x SINE Alu -182 130 1 3285 215 94 46 chr13 3574159 3575221 -98297948 + L1MCb LINE L1 82 1194 -4851 1054 151 44 0 chr13 3575251 3575410 -98297759 + FRAM SINE Alu 1 160 -16 1191 221 108 18 chr13 3575410 3575745 -98297424 + L1MCb LINE L1 1217 1581 -4983 386 254 135 24 chr13 3575955 3576081 -98297088 - L1MCa LINE L1 -6700 159 20 798 274 124 41 chr13 3576100 3576376 -98296793 - L1ME3A LINE L1 -342 5828 5576 2277 117 0 0 chr13 3576376 3576684 -98296485 - AluSx SINE Alu -4 308 1 798 274 124 41 chr13 3576684 3577158 -98296011 - L1ME3A LINE L1 -594 5576 5023 714 285 58 10 chr13 3577189 3577480 -98295689 - L1ME3A LINE L1 -1214 4932 4628 198 0 0 0 chr13 3577483 3577505 -98295664 + (CA)n Simple_repeat Simple_repeat 2 23 0 2222 242 54 29 chr13 3577854 3578552 -98294617 - L1ME3A LINE L1 -3197 2949 2234 4057 40 8 8 chr13 3578571 3579049 -98294120 - L1PA4 LINE L1 -1 6154 5677 348 259 152 25 chr13 3579436 3579633 -98293536 + MIR SINE MIR 20 241 -21 387 393 22 11 chr13 3579851 3580123 -98293046 + L3 LINE CR1 937 1211 -366 183 42 0 0 chr13 3580317 3580341 -98292828 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2260 101 3 3 chr13 3580420 3580718 -98292451 - AluSq SINE Alu -10 303 6 255 328 88 73 chr13 3580886 3581202 -98291967 + L2 LINE L2 2422 2747 -567 2620 149 23 44 chr13 3581202 3581684 -98291485 + L1MB3 LINE L1 5712 6183 0 255 328 88 73 chr13 3581684 3581763 -98291406 + L2 LINE L2 2747 2823 -491 770 268 104 9 chr13 3581866 3582097 -98291072 + MIR SINE MIR 1 253 -9 2438 54 7 0 chr13 3582129 3582425 -98290744 - AluY SINE Alu -13 298 1 303 349 34 20 chr13 3582584 3582733 -98290436 + L2 LINE L2 3122 3272 0 222 184 41 20 chr13 3582735 3582784 -98290385 + L3 LINE CR1 1488 1537 -40 408 20 0 0 chr13 3583717 3583766 -98289403 + (GA)n Simple_repeat Simple_repeat 2 50 0 298 303 40 0 chr13 3583878 3583977 -98289192 - MER5A DNA MER1_type -77 112 10 295 239 64 46 chr13 3586458 3586567 -98286602 - MIR3 SINE MIR -8 200 90 2309 88 0 20 chr13 3587234 3587540 -98285629 + AluSq SINE Alu 1 300 -13 2051 141 0 3 chr13 3588045 3588342 -98284827 - AluJo SINE Alu -16 296 1 21 36 0 0 chr13 3588410 3588438 -98284731 + AT_rich Low_complexity Low_complexity 1 28 0 6747 164 52 15 chr13 3588464 3588546 -98284623 - L1MA9 LINE L1 -70 6242 6164 306 0 0 0 chr13 3588546 3588580 -98284589 + (TG)n Simple_repeat Simple_repeat 1 34 0 6747 164 52 15 chr13 3588580 3590718 -98282451 - L1MA9 LINE L1 -148 6164 3943 2581 171 28 19 chr13 3590713 3591244 -98281925 + L1MA9 LINE L1 3394 3929 -2217 * 245 88 147 118 chr13 3592516 3592542 -98280627 - MER46A DNA MER2_type -2565 166 142 1390 211 0 31 chr13 3592542 3592831 -98280338 - L1MB7 LINE L1 -1 6183 5904 690 134 225 0 chr13 3592832 3592974 -98280195 + MER46B DNA MER2_type 1 49 -187 6012 115 12 35 chr13 3592977 3594052 -98279117 + L1PB3 LINE L1 5097 6152 -2 1203 142 5 0 chr13 3594259 3594449 -98278720 + MER46B DNA MER2_type 46 236 0 1276 197 4 12 chr13 3594457 3594706 -98278463 - L1MB7 LINE L1 -289 5895 5649 210 290 30 40 chr13 3594777 3594877 -98278292 + L2 LINE L2 2781 2879 -435 340 257 18 44 chr13 3595416 3595529 -98277640 + L2 LINE L2 3204 3313 0 272 299 30 0 chr13 3596158 3596222 -98276947 + MER58A DNA MER1_type 1 66 -41 822 243 131 25 chr13 3596222 3596579 -98276590 - MER57A LTR ERV1 -2 401 1 450 227 0 0 chr13 3596579 3596667 -98276502 + MER58A DNA MER1_type 61 148 0 227 233 0 0 chr13 3596667 3596710 -98276459 + MER58A DNA MER1_type 177 219 -5 2230 94 44 0 chr13 3598103 3598400 -98274769 - AluSg SINE Alu 0 310 1 1922 108 32 4 chr13 3598460 3598738 -98274431 + AluSc SINE Alu 1 286 -23 234 91 0 0 chr13 3599136 3599169 -98274000 + (A)n Simple_repeat Simple_repeat 1 33 0 230 285 258 43 chr13 3599419 3599675 -98273494 + L3b LINE CR1 1257 1567 -16 23 33 0 0 chr13 3599821 3599851 -98273318 + AT_rich Low_complexity Low_complexity 1 30 0 362 254 76 42 chr13 3600160 3600278 -98272891 - MER5A DNA MER1_type -51 138 17 1200 186 5 9 chr13 3600888 3601098 -98272071 - MER3 DNA MER1_type 0 209 1 1524 134 169 12 chr13 3601366 3601620 -98271549 + AluJb SINE Alu 1 294 -8 257 170 0 38 chr13 3602017 3602070 -98271099 - L2 LINE L2 0 3313 3263 940 208 73 38 chr13 3602318 3602635 -98270534 - MLT1C LTR MaLR 0 467 140 1330 149 38 4 chr13 3602635 3602921 -98270248 + L1PA16 LINE L1 5858 6162 -1 625 180 25 87 chr13 3602947 3603108 -98270061 - MLT1C LTR MaLR -316 151 1 319 259 99 71 chr13 3603881 3604093 -98269076 - L2 LINE L2 -2 3311 3094 221 290 167 41 chr13 3604400 3604645 -98268524 - L2 LINE L2 -674 2640 2365 2016 124 0 7 chr13 3604713 3605003 -98268166 - AluSx SINE Alu -24 288 1 2346 70 0 3 chr13 3605190 3605517 -98267652 + AluY SINE Alu 1 326 0 435 329 29 14 chr13 3605933 3606073 -98267096 + L3 LINE CR1 1395 1536 -41 2218 92 0 17 chr13 3606273 3606567 -98266602 - AluSc SINE Alu -20 289 1 601 196 113 0 chr13 3606722 3606855 -98266314 + MSTB2 LTR MaLR 263 410 -47 2499 62 0 10 chr13 3607021 3607328 -98265841 - AluY SINE Alu -7 304 1 886 105 0 16 chr13 3607463 3607587 -98265582 - FLAM_C SINE Alu -11 132 11 23 33 0 0 chr13 3607612 3607642 -98265527 + AT_rich Low_complexity Low_complexity 1 30 0 2281 107 0 7 chr13 3608473 3608783 -98264386 - AluSx SINE Alu 0 312 5 2531 63 0 0 chr13 3609213 3609516 -98263653 - AluY SINE Alu -8 303 1 2384 45 21 7 chr13 3609720 3610009 -98263160 - AluY SINE Alu -18 293 1 228 285 168 0 chr13 3610502 3610639 -98262530 - HAL1 LINE L1 -2319 188 29 1016 197 16 0 chr13 3611369 3611552 -98261617 + MER5A DNA MER1_type 3 188 -1 434 266 129 60 chr13 3611581 3612246 -98260923 - L1MEd LINE L1 -2964 3165 2455 333 345 114 8 chr13 3612256 3612502 -98260667 - L1MEd LINE L1 -3969 2341 2070 1707 184 74 18 chr13 3612638 3612964 -98260205 + MER2 DNA MER2_type 1 344 0 786 255 82 85 chr13 3613191 3614241 -98258928 - L1MEd LINE L1 -4480 1649 609 288 339 114 40 chr13 3614452 3614830 -98258339 - MLT1J2 LTR MaLR -44 406 1 263 253 27 13 chr13 3614865 3614940 -98258229 - L1MEd LINE L1 -6031 88 13 192 250 0 0 chr13 3614947 3614987 -98258182 - MER5B DNA MER1_type -135 43 4 2353 70 3 35 chr13 3615212 3615525 -98257644 + AluY SINE Alu 1 303 -8 32 43 0 0 chr13 3616178 3616224 -98256945 + AT_rich Low_complexity Low_complexity 1 46 0 2412 84 0 0 chr13 3616348 3616644 -98256525 - AluSq SINE Alu -17 296 1 2044 93 0 15 chr13 3617139 3617407 -98255762 - AluSx SINE Alu -43 269 6 295 273 201 26 chr13 3617564 3617718 -98255451 - MIR3 SINE MIR -7 201 21 259 330 21 11 chr13 3618641 3618735 -98254434 - MIR SINE MIR -119 143 49 443 233 92 0 chr13 3618795 3618915 -98254254 + LTR33A LTR ERVL 61 191 -332 319 196 345 0 chr13 3618973 3619121 -98254048 + LTR33A LTR ERVL 318 516 -7 239 308 68 30 chr13 3619419 3619552 -98253617 - MER5B DNA MER1_type -40 138 1 723 199 58 0 chr13 3619560 3619731 -98253438 + MER5A DNA MER1_type 1 181 -8 246 321 60 22 chr13 3619952 3620086 -98253083 - L2 LINE L2 0 3313 3175 295 268 70 108 chr13 3622839 3622996 -98250173 + MER96 DNA MER1_type? 25 175 0 225 0 0 0 chr13 3623161 3623186 -98249983 + (TG)n Simple_repeat Simple_repeat 2 26 0 2089 147 0 6 chr13 3623197 3623511 -98249658 - AluSx SINE Alu 0 312 1 209 325 13 0 chr13 3625687 3625764 -98247405 - L2 LINE L2 -11 3302 3225 291 325 124 20 chr13 3625807 3626056 -98247113 + L3b LINE CR1 1123 1397 -186 1871 214 116 9 chr13 3626158 3626617 -98246552 - MLT2B2 LTR ERVL -7 508 1 2250 115 0 3 chr13 3626622 3626918 -98246251 - AluSx SINE Alu -17 295 1 268 330 41 0 chr13 3627489 3627586 -98245583 + L2 LINE L2 3159 3259 -13 289 326 46 17 chr13 3627795 3627970 -98245199 + L1MC/D LINE L1 5694 5873 -1935 203 254 34 0 chr13 3628190 3628249 -98244920 + (TA)n Simple_repeat Simple_repeat 2 62 0 203 239 0 34 chr13 3628303 3628391 -98244778 + (TAAA)n Simple_repeat Simple_repeat 2 86 0 285 275 225 14 chr13 3628786 3628928 -98244241 + MER5B DNA MER1_type 6 177 -1 224 293 11 98 chr13 3629015 3629189 -98243980 + MER5A DNA MER1_type 1 159 -30 2522 63 48 40 chr13 3629593 3629972 -98243197 - L1PA5 LINE L1 -3 6151 5770 187 405 32 16 chr13 3630884 3631010 -98242159 + L3 LINE CR1 3 130 -1447 557 154 8 85 chr13 3631173 3631303 -98241866 + MLT2B1 LTR ERVL 399 518 -2 2550 61 0 0 chr13 3631596 3631893 -98241276 + AluY SINE Alu 1 297 -14 833 96 0 4 chr13 3632156 3632367 -98240802 - AluY SINE Alu -8 303 2 279 59 0 0 chr13 3632482 3632516 -98240653 - MLT2C2 LTR ERVL -335 129 96 762 211 96 46 chr13 3632540 3632758 -98240411 + MLT2C1 LTR ERVL 121 349 -48 189 213 0 0 chr13 3632780 3632827 -98240342 + C-rich Low_complexity Low_complexity 1 47 0 357 117 0 0 chr13 3633109 3633169 -98240000 + (TA)n Simple_repeat Simple_repeat 1 60 0 204 232 21 11 chr13 3633262 3633357 -98239812 + (TA)n Simple_repeat Simple_repeat 2 97 0 248 296 88 25 chr13 3633398 3633557 -98239612 - L1ME4a LINE L1 -71 6050 5882 2028 97 0 0 chr13 3633666 3633933 -98239236 + AluSq SINE Alu 44 310 -3 312 320 16 0 chr13 3633942 3634067 -98239102 - MIR SINE MIR -15 247 121 2576 55 0 3 chr13 3634176 3634484 -98238685 - AluY SINE Alu -4 307 1 2452 45 3 7 chr13 3635961 3636253 -98236916 + AluY SINE Alu 1 291 -20 1152 276 100 51 chr13 3637288 3638345 -98234824 + L1MCc LINE L1 1168 2484 -4638 2510 127 11 3 chr13 3638727 3639088 -98234081 - THE1B LTR MaLR 0 364 1 372 349 60 5 chr13 3639607 3639822 -98233347 + L2 LINE L2 2745 2971 -343 521 172 0 11 chr13 3639832 3639925 -98233244 - Tigger7 DNA MER2_type -6 2581 2490 * 1538 183 4 8 chr13 3639922 3640185 -98232984 - Tigger7 DNA MER2_type -2224 263 2 418 271 205 5 chr13 3640203 3640413 -98232756 + L2 LINE L2 2989 3240 -73 336 330 154 0 chr13 3640470 3640796 -98232373 - L2 LINE L2 -150 3163 2794 838 294 144 17 chr13 3640867 3641513 -98231656 - L2 LINE L2 -671 2643 1916 478 288 94 21 chr13 3641748 3641981 -98231188 + MIR SINE MIR 13 262 0 1487 289 29 25 chr13 3642733 3643346 -98229823 - L1MC4a LINE L1 -1883 5925 5310 761 118 17 0 chr13 3643317 3643436 -98229733 - L1MCa LINE L1 -4801 1625 1505 * 1383 174 190 45 chr13 3643436 3643810 -98229359 - MSTB2 LTR MaLR -7 450 23 5841 240 133 13 chr13 3643823 3645371 -98227798 - MSTD-int LTR MaLR 0 1735 2 1295 234 46 38 chr13 3645373 3645766 -98227403 - MSTD LTR MaLR 0 396 1 4615 201 34 100 chr13 3645801 3647367 -98225802 - L1MCa LINE L1 -4938 1488 26 180 125 0 0 chr13 3647442 3647474 -98225695 + (CA)n Simple_repeat Simple_repeat 1 32 0 1771 143 4 8 chr13 3647484 3647743 -98225426 - AluJo SINE Alu -49 263 6 2161 79 61 0 chr13 3647750 3648028 -98225141 - AluY SINE Alu -16 295 1 399 309 82 30 chr13 3648163 3648785 -98224384 - L1MC4a LINE L1 -1006 5420 4767 2225 100 3 7 chr13 3648823 3649141 -98224028 + AluSx SINE Alu 1 312 0 937 121 0 0 chr13 3649164 3649296 -98223873 + FLAM_C SINE Alu 1 132 -1 206 111 56 0 chr13 3649363 3649399 -98223770 + CT-rich Low_complexity Low_complexity 3 40 0 617 268 42 0 chr13 3649623 3649813 -98223356 + MIR SINE MIR 60 257 -5 378 0 0 0 chr13 3652107 3652149 -98221020 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr13 3652150 3652179 -98220990 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr13 3652241 3652279 -98220890 + GC_rich Low_complexity Low_complexity 1 38 0 231 36 0 0 chr13 3652782 3652810 -98220359 + (TG)n Simple_repeat Simple_repeat 1 28 0 189 132 0 0 chr13 3654537 3654575 -98218594 + (TC)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr13 3656091 3656114 -98217055 + GC_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr13 3656748 3656800 -98216369 + GC_rich Low_complexity Low_complexity 1 52 0 206 220 17 0 chr13 3659531 3659590 -98213579 + CT-rich Low_complexity Low_complexity 1 60 0 309 317 7 113 chr13 3660117 3660401 -98212768 + L2 LINE L2 3014 3267 -5 365 237 31 0 chr13 3660618 3660715 -98212454 + MIR SINE MIR 93 192 -70 2322 69 0 60 chr13 3661897 3662216 -98210953 + AluY SINE Alu 4 303 -8 345 137 0 0 chr13 3662712 3662763 -98210406 - MLT1A1 LTR MaLR -58 307 257 203 171 158 53 chr13 3663953 3664029 -98209140 - L2 LINE L2 -12 3301 3218 256 257 9 106 chr13 3664045 3664158 -98209011 + L2 LINE L2 3171 3272 0 1649 148 18 25 chr13 3664238 3664515 -98208654 - AluJo SINE Alu -2 310 36 210 171 0 0 chr13 3664707 3664742 -98208427 + (TA)n Simple_repeat Simple_repeat 2 36 0 323 158 53 53 chr13 3665064 3665140 -98208029 - Charlie7 DNA MER1_type 0 2612 2537 23 0 0 0 chr13 3665175 3665198 -98207971 + AT_rich Low_complexity Low_complexity 1 23 0 182 255 59 0 chr13 3666032 3666083 -98207086 - L3b LINE CR1 -50 1533 1480 186 314 14 0 chr13 3666918 3666988 -98206181 + MIR3 SINE MIR 116 186 -22 1652 135 108 0 chr13 3668306 3668566 -98204603 - AluSx SINE Alu -24 288 1 288 262 58 29 chr13 3669115 3669218 -98203951 - MIR SINE MIR -80 128 23 208 333 71 0 chr13 3670726 3670825 -98202344 - MIR SINE MIR -112 150 45 334 294 64 18 chr13 3671550 3671659 -98201510 + L2 LINE L2 3159 3272 0 260 356 7 0 chr13 3672405 3672554 -98200615 + (CA)n Simple_repeat Simple_repeat 1 150 0 * 339 301 28 17 chr13 3672528 3672704 -98200465 + (CTCA)n Simple_repeat Simple_repeat 3 180 0 193 215 31 92 chr13 3672742 3672807 -98200362 - L2 LINE L2 -10 3303 3243 2689 215 107 5 chr13 3672807 3673398 -98199771 - MER82 DNA MER2_type -2 651 1 182 211 35 0 chr13 3674477 3674534 -98198635 + CT-rich Low_complexity Low_complexity 2 60 0 224 316 118 21 chr13 3674703 3674890 -98198279 + MIR SINE MIR 23 227 -35 403 268 28 16 chr13 3676293 3676418 -98196751 - MIR3 SINE MIR -8 200 71 444 37 0 0 chr13 3677300 3677354 -98195815 + (TG)n Simple_repeat Simple_repeat 1 54 0 1735 164 40 3 chr13 3679385 3679684 -98193485 - AluJb SINE Alu -2 310 1 2575 30 0 7 chr13 3680046 3680345 -98192824 - AluY SINE Alu -14 297 1 215 351 26 18 chr13 3680489 3680603 -98192566 + MIR3 SINE MIR 88 202 -6 287 333 48 24 chr13 3680662 3680830 -98192339 - MIR SINE MIR -70 192 21 306 0 0 0 chr13 3682253 3682287 -98190882 + (TG)n Simple_repeat Simple_repeat 2 35 0 442 261 72 67 chr13 3682579 3682759 -98190410 + MER5A DNA MER1_type 8 188 -1 1302 64 0 0 chr13 3683256 3683412 -98189757 - L1PA10 LINE L1 -4 6164 6009 390 42 0 0 chr13 3683938 3683986 -98189183 + (TG)n Simple_repeat Simple_repeat 2 49 0 202 0 59 29 chr13 3684223 3684257 -98188912 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 35 41 0 0 chr13 3684292 3684341 -98188828 + AT_rich Low_complexity Low_complexity 1 49 0 35 0 0 0 chr13 3687745 3687780 -98185389 + AT_rich Low_complexity Low_complexity 1 35 0 2373 80 0 13 chr13 3687781 3688083 -98185086 + AluY SINE Alu 1 298 -13 207 0 0 0 chr13 3689255 3689278 -98183891 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1662 195 0 3 chr13 3689278 3689560 -98183609 - AluSx SINE Alu -27 285 5 276 236 90 11 chr13 3689699 3689788 -98183381 - L2 LINE L2 -1 3312 3217 207 0 0 0 chr13 3691435 3691458 -98181711 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4038 244 74 68 chr13 3692245 3692692 -98180477 + L1ME1 LINE L1 422 865 -5531 2691 118 66 20 chr13 3692692 3693099 -98180070 - MSTB LTR MaLR 0 426 1 4038 244 74 68 chr13 3693099 3693760 -98179409 + L1ME1 LINE L1 865 1520 -4876 1772 68 0 5 chr13 3693760 3693981 -98179188 - AluY SINE Alu -6 305 86 4038 244 74 68 chr13 3693981 3694150 -98179019 + L1ME1 LINE L1 1520 1686 -4710 2429 75 0 0 chr13 3694150 3694442 -98178727 + AluY SINE Alu 1 292 -19 4038 244 74 68 chr13 3694442 3694828 -98178341 + L1ME1 LINE L1 1686 2098 -4298 2466 230 31 8 chr13 3694831 3695467 -98177702 + L1ME1 LINE L1 2179 2829 -3386 1919 50 0 0 chr13 3695453 3695692 -98177477 - L1P LINE L1 -848 5298 5060 * 2758 75 0 0 chr13 3695692 3696025 -98177144 + L1PA5 LINE L1 5820 6154 0 642 247 110 0 chr13 3696025 3696252 -98176917 + L1ME1 LINE L1 2806 3057 -3158 229 211 19 0 chr13 3696246 3696298 -98176871 + L1ME1 LINE L1 3762 3814 -2401 * 2190 123 3 0 chr13 3696328 3696630 -98176539 + AluSx SINE Alu 5 307 -5 2550 231 58 33 chr13 3696630 3697409 -98175760 + L1ME1 LINE L1 4053 4850 -1365 * 3066 208 86 28 chr13 3697400 3698300 -98174869 + L1ME1 LINE L1 5293 6399 -4 33 0 0 0 chr13 3699333 3699366 -98173803 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr13 3699525 3699554 -98173615 + AT_rich Low_complexity Low_complexity 1 29 0 660 287 121 18 chr13 3699677 3699900 -98173269 + MIR SINE MIR 13 258 -4 1529 119 80 88 chr13 3700775 3701055 -98172114 + L1MA8 LINE L1 5943 6221 -70 2282 113 0 0 chr13 3701055 3701357 -98171812 - AluSx SINE Alu -10 302 1 1529 119 80 88 chr13 3701357 3701428 -98171741 + L1MA8 LINE L1 6221 6291 0 472 320 75 23 chr13 3702510 3702816 -98170353 + L2 LINE L2 2253 2574 -740 892 225 67 0 chr13 3702926 3703135 -98170034 - MER46C DNA MER2_type -24 314 92 3351 149 9 11 chr13 3704625 3705194 -98167975 - L1MA9 LINE L1 0 6312 5745 338 385 8 0 chr13 3705473 3705595 -98167574 - L2 LINE L2 -9 3263 3141 2369 95 0 7 chr13 3705677 3705982 -98167187 + AluSq SINE Alu 1 303 -10 183 42 0 0 chr13 3706061 3706085 -98167084 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 387 393 22 11 chr13 3706279 3706551 -98166618 - L3 LINE CR1 -366 1211 937 348 259 152 25 chr13 3706769 3706966 -98166203 - MIR SINE MIR -21 241 20 1199 119 0 6 chr13 3708092 3708416 -98164753 + (CCA)n Simple_repeat Simple_repeat 1 503 0 579 269 12 29 chr13 3708417 3708588 -98164581 - MIR SINE MIR -9 253 86 30 0 0 0 chr13 3710174 3710204 -98162965 + AT_rich Low_complexity Low_complexity 1 30 0 507 209 29 64 chr13 3710509 3710681 -98162488 - MER104 DNA Tc2 0 180 15 206 224 20 0 chr13 3710747 3710796 -98162373 + (CCCTAA)n Simple_repeat Simple_repeat 4 53 0 229 405 41 15 chr13 3710796 3711063 -98162106 + L2 LINE L2 2463 2736 -578 1484 162 62 4 chr13 3711191 3711450 -98161719 - AluJo SINE Alu -38 274 1 1326 166 28 5 chr13 3711825 3712042 -98161127 + MER58A DNA MER1_type 1 222 -2 192 158 0 0 chr13 3713503 3713541 -98159628 + GA-rich Low_complexity Low_complexity 6 43 0 858 286 81 25 chr13 3713774 3713954 -98159215 - MLT1J LTR MaLR 0 511 343 2483 199 88 27 chr13 3713954 3714476 -98158693 + MLT2B3 LTR ERVL 1 554 0 858 286 81 25 chr13 3714476 3714750 -98158419 - MLT1J LTR MaLR -168 343 6 478 166 101 157 chr13 3715373 3715590 -98157579 + MER102a DNA MER1_type 126 330 0 354 348 90 32 chr13 3715593 3715993 -98157176 - L2 LINE L2 -1039 2275 1853 367 287 22 37 chr13 3716214 3716350 -98156819 - MIR SINE MIR -70 192 59 189 210 113 0 chr13 3716798 3716860 -98156309 + L2 LINE L2 3245 3313 0 711 299 0 15 chr13 3716974 3717178 -98155991 - MIR SINE MIR 0 262 62 2321 91 0 3 chr13 3717479 3717777 -98155392 - AluSx SINE Alu -15 297 1 328 271 133 13 chr13 3719287 3719438 -98153731 + MER5A DNA MER1_type 21 189 0 229 275 116 0 chr13 3719647 3719716 -98153453 - MIR SINE MIR -75 187 111 2225 111 10 0 chr13 3719838 3720136 -98153033 - AluSq SINE Alu -12 301 1 345 242 0 0 chr13 3720434 3720500 -98152669 + MER63 DNA MER1_type 681 746 -314 594 237 200 0 chr13 3722960 3723150 -98150019 - MIR SINE MIR -3 259 32 1867 211 40 11 chr13 3723632 3724078 -98149091 + MLT1C LTR MaLR 1 459 -8 260 262 262 0 chr13 3724087 3724190 -98148979 - MER5A DNA MER1_type -39 150 21 346 339 127 27 chr13 3724754 3725046 -98148123 + L2 LINE L2 2944 3264 -8 1222 49 0 27 chr13 3725594 3725778 -98147391 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1092 289 50 56 chr13 3725778 3726455 -98146714 + L2 LINE L2 2655 3313 0 219 296 57 0 chr13 3726613 3726701 -98146468 - L2 LINE L2 0 3272 3180 375 347 95 46 chr13 3727116 3727914 -98145255 + L2 LINE L2 2220 3058 -214 2121 249 64 40 chr13 3728038 3729021 -98144148 - L1MEc LINE L1 -4494 1784 817 243 0 0 0 chr13 3729023 3729050 -98144119 + (TA)n Simple_repeat Simple_repeat 1 27 0 2612 147 12 7 chr13 3729050 3729473 -98143696 - L1MB2 LINE L1 -62 6109 5685 2070 260 92 54 chr13 3729474 3730236 -98142933 - L1MEc LINE L1 -5571 825 35 1770 155 17 28 chr13 3730964 3731255 -98141914 - AluJo SINE Alu -24 288 1 373 317 81 8 chr13 3731402 3731525 -98141644 + MIR3 SINE MIR 3 134 -74 570 274 88 34 chr13 3731551 3731755 -98141414 - MIR SINE MIR 0 262 48 669 230 131 80 chr13 3731942 3732429 -98140740 - L1MEd LINE L1 -4927 1192 681 1244 145 114 86 chr13 3732789 3733079 -98140090 - AluJb SINE Alu -14 298 1 498 283 66 0 chr13 3733087 3733253 -98139916 - L1MEd LINE L1 -5939 180 4 326 314 97 0 chr13 3733254 3733378 -98139791 - MIR SINE MIR -61 201 66 27 39 0 19 chr13 3734227 3734244 -98138925 + AT_rich Low_complexity Low_complexity 1 17 -34 1542 110 103 8 chr13 3734244 3734507 -98138662 + L1MA3 LINE L1 6018 6305 0 27 39 0 19 chr13 3734507 3734541 -98138628 + AT_rich Low_complexity Low_complexity 17 51 0 23 33 0 0 chr13 3735110 3735140 -98138029 + AT_rich Low_complexity Low_complexity 1 30 0 758 266 31 5 chr13 3735140 3735332 -98137837 - MIR SINE MIR -51 211 15 283 250 145 57 chr13 3736920 3737044 -98136125 + MIR3 SINE MIR 21 155 -53 5518 148 21 8 chr13 3737434 3738325 -98134844 + MER4D LTR ERV1 1 903 0 2504 183 63 51 chr13 3738804 3739329 -98133840 + LTR26B LTR ERV1 1 531 0 183 42 0 0 chr13 3739561 3739585 -98133584 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 219 227 0 0 chr13 3740081 3740125 -98133044 + GA-rich Low_complexity Low_complexity 2 45 0 1845 161 63 9 chr13 3741151 3741561 -98131608 - MER31A LTR ERV1 -19 447 14 337 310 155 41 chr13 3743169 3743901 -98129268 + L2 LINE L2 2234 3052 -220 258 268 45 18 chr13 3743956 3744068 -98129101 + MER65A LTR ERV1 1 115 -330 500 210 10 0 chr13 3744519 3744619 -98128550 + L2 LINE L2 3172 3272 0 192 200 0 78 chr13 3745566 3745629 -98127540 + L2 LINE L2 3207 3303 -10 2115 55 82 34 chr13 3745858 3746033 -98127136 - AluYa5 SINE Alu -4 307 111 2562 50 7 0 chr13 3746033 3746336 -98126833 - AluY SINE Alu -6 305 1 2115 55 82 34 chr13 3746336 3746453 -98126716 - AluYa5 SINE Alu -200 111 1 22 0 0 0 chr13 3747436 3747458 -98125711 + AT_rich Low_complexity Low_complexity 1 22 0 3489 211 91 82 chr13 3747504 3748759 -98124410 + L1MC4 LINE L1 6759 8028 -14 1839 207 39 0 chr13 3748759 3749093 -98124076 - MER7A DNA MER2_type -1 345 1 3489 211 91 82 chr13 3749093 3749109 -98124060 + L1MC4 LINE L1 8028 8042 0 526 236 32 74 chr13 3751045 3751261 -98121908 - HAL1 LINE L1 -1 2506 2300 897 211 17 28 chr13 3751456 3751636 -98121533 - MER45A DNA AcHobo 0 178 1 1421 286 136 32 chr13 3751789 3752666 -98120503 - HAL1 LINE L1 -343 2164 1197 307 155 32 0 chr13 3752672 3752747 -98120422 - Alu SINE Alu -3 299 239 329 305 168 31 chr13 3752779 3752973 -98120196 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 3752973 3753004 -98120165 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 329 305 168 31 chr13 3753004 3753232 -98119937 - HAL1 LINE L1 -1530 977 663 193 234 0 0 chr13 3754663 3754710 -98118459 - MIR SINE MIR -111 151 105 2568 50 0 0 chr13 3754872 3755174 -98117995 + AluY SINE Alu 1 302 -9 322 401 28 19 chr13 3755281 3755493 -98117676 + L2 LINE L2 3032 3245 -27 2141 129 16 0 chr13 3755562 3755865 -98117304 - AluSx SINE Alu -4 308 1 2124 143 9 109 chr13 3757206 3757391 -98115778 + MLT2C1 LTR ERVL 1 118 -279 1501 172 16 67 chr13 3757391 3757705 -98115464 - AluJo SINE Alu -14 298 1 2124 143 9 109 chr13 3757705 3757960 -98115209 + MLT2C1 LTR ERVL 118 397 0 2359 69 3 0 chr13 3758571 3758859 -98114310 - AluSc SINE Alu -20 289 1 370 282 48 0 chr13 3759624 3759727 -98113442 + MIR SINE MIR 46 153 -109 2268 117 0 3 chr13 3760562 3760870 -98112299 + AluSx SINE Alu 5 311 -1 499 159 24 127 chr13 3760952 3761078 -98112091 + Tigger1 DNA MER2_type 6 118 -2300 255 31 0 0 chr13 3761078 3761110 -98112059 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1615 64 0 15 chr13 3761110 3761313 -98111856 - AluY SINE Alu -111 200 1 1097 71 0 0 chr13 3761324 3761465 -98111704 - AluY SINE Alu -1 310 170 15227 122 19 9 chr13 3761465 3763761 -98109408 + Tigger1 DNA MER2_type 101 2418 0 350 94 0 0 chr13 3764168 3764221 -98108948 - L1MA9 LINE L1 -255 6057 6005 235 316 103 32 chr13 3765494 3765649 -98107520 - MIR SINE MIR -16 246 81 209 214 24 48 chr13 3766024 3766108 -98107061 + A-rich Low_complexity Low_complexity 4 85 0 711 51 24 55 chr13 3768313 3768570 -98104599 + (TCTA)n Simple_repeat Simple_repeat 1 248 0 568 305 79 49 chr13 3769215 3769812 -98103357 - L1ME2 LINE L1 -293 5871 5257 184 353 0 0 chr13 3769926 3769994 -98103175 + MIR SINE MIR 48 115 -147 338 31 51 51 chr13 3770218 3770316 -98102853 + (TCTA)n Simple_repeat Simple_repeat 3 100 0 2252 101 7 0 chr13 3770755 3771051 -98102118 - AluSc SINE Alu -11 298 1 2506 98 3 35 chr13 3771405 3771466 -98101703 - THE1A LTR MaLR 0 355 294 2430 54 3 7 chr13 3771466 3771764 -98101405 - AluY SINE Alu -14 297 1 2506 98 3 35 chr13 3771764 3772069 -98101100 - THE1A LTR MaLR -61 294 1 834 181 0 0 chr13 3772633 3772771 -98100398 + FLAM_C SINE Alu 1 138 -5 1565 174 15 58 chr13 3772775 3773103 -98100066 + 7SLRNA srpRNA srpRNA 2 315 -5 2715 48 0 0 chr13 3773434 3773744 -98099425 + AluY SINE Alu 1 310 -1 2526 54 3 16 chr13 3774412 3774727 -98098442 - AluY SINE Alu 0 311 1 186 314 54 50 chr13 3775054 3775293 -98097876 + L2 LINE L2 2602 2841 -473 213 39 0 0 chr13 3775654 3775680 -98097489 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 331 78 78 0 chr13 3775915 3775966 -98097203 - MLT2A1 LTR ERVL 0 453 399 361 144 61 0 chr13 3775974 3776106 -98097063 + (TA)n Simple_repeat Simple_repeat 2 141 0 3145 51 23 5 chr13 3776108 3776501 -98096668 - MLT2A1 LTR ERVL -44 400 1 396 224 197 67 chr13 3776501 3776622 -98096547 + MARNA DNA Mariner 188 291 -295 2103 142 0 0 chr13 3776622 3776925 -98096244 - AluJb SINE Alu -9 303 1 396 224 197 67 chr13 3776925 3777049 -98096120 + MARNA DNA Mariner 291 466 -120 580 300 12 33 chr13 3777961 3778204 -98094965 + MIR SINE MIR 18 255 -7 393 298 39 44 chr13 3780020 3780201 -98092968 - MIR SINE MIR -70 192 13 746 171 0 8 chr13 3780320 3780449 -98092720 + FLAM_C SINE Alu 1 128 -5 1187 197 79 48 chr13 3780464 3780754 -98092415 + AluJo SINE Alu 2 300 -2 21 57 0 0 chr13 3780972 3781007 -98092162 + AT_rich Low_complexity Low_complexity 1 35 0 377 51 25 38 chr13 3781111 3781190 -98091979 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 209 214 24 48 chr13 3783394 3783478 -98089691 + T-rich Low_complexity Low_complexity 4 85 0 194 316 103 32 chr13 3783853 3784008 -98089161 + MIR SINE MIR 81 246 -16 2043 66 0 0 chr13 3784765 3785006 -98088163 - AluY SINE Alu -70 241 1 530 166 0 151 chr13 3785299 3785438 -98087731 - MLT2D LTR ERVL -2 412 295 187 405 32 16 chr13 3785594 3785720 -98087449 - L3 LINE CR1 -1447 130 3 2540 61 48 40 chr13 3786632 3787011 -98086158 + L1PA5 LINE L1 5770 6151 -3 224 293 11 98 chr13 3787415 3787589 -98085580 - MER5A DNA MER1_type -30 159 1 285 275 225 14 chr13 3787676 3787818 -98085351 - MER5B DNA MER1_type -1 177 6 203 239 0 34 chr13 3788213 3788301 -98084868 + (TTTA)n Simple_repeat Simple_repeat 2 86 0 203 254 34 0 chr13 3788355 3788414 -98084755 + (TA)n Simple_repeat Simple_repeat 1 61 0 289 326 46 17 chr13 3788634 3788809 -98084360 - L1MC/D LINE L1 -1935 5873 5694 268 330 41 0 chr13 3789018 3789115 -98084054 - L2 LINE L2 -13 3259 3159 1765 40 0 5 chr13 3789386 3789588 -98083581 - AluY SINE Alu -108 203 3 691 0 45 0 chr13 3790217 3790306 -98082863 + (TTTC)n Simple_repeat Simple_repeat 2 94 0 1891 153 0 0 chr13 3790316 3790590 -98082579 - AluSx SINE Alu -38 274 1 219 139 0 0 chr13 3791062 3791098 -98082071 + (TC)n Simple_repeat Simple_repeat 2 37 0 201 133 0 67 chr13 3791344 3791389 -98081780 + (TCTCTG)n Simple_repeat Simple_repeat 4 45 0 357 281 59 51 chr13 3792409 3792628 -98080541 - MIR SINE MIR -33 229 11 1087 33 0 8 chr13 3794955 3795077 -98078092 + AluY SINE Alu 15 135 -176 1922 53 137 0 chr13 3795077 3795340 -98077829 + AluY SINE Alu 2 300 -1 23 0 0 0 chr13 3795340 3795363 -98077806 + AT_rich Low_complexity Low_complexity 1 23 0 601 304 29 21 chr13 3795687 3795930 -98077239 - MIR SINE MIR -1 261 17 21 71 0 0 chr13 3796241 3796283 -98076886 + AT_rich Low_complexity Low_complexity 1 42 0 2241 95 0 26 chr13 3796283 3796587 -98076582 - AluSq SINE Alu -17 296 1 3722 89 8 6 chr13 3796950 3797476 -98075693 - L1PB1 LINE L1 -7 6144 5618 1050 187 72 59 chr13 3797627 3797839 -98075330 + L1MA9 LINE L1 5946 6179 -121 324 0 0 0 chr13 3797839 3797875 -98075294 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 187 72 59 chr13 3797875 3797999 -98075170 + L1MA9 LINE L1 6179 6300 0 2071 141 0 3 chr13 3798079 3798376 -98074793 + AluJo SINE Alu 1 296 -16 2293 91 0 23 chr13 3798881 3799188 -98073981 - AluSq SINE Alu -13 300 1 261 239 64 46 chr13 3799855 3799964 -98073205 + MIR3 SINE MIR 90 200 -8 191 296 70 43 chr13 3800171 3800286 -98072883 - L2 LINE L2 -896 2418 2301 273 316 20 0 chr13 3802445 3802543 -98070626 + MER5A DNA MER1_type 10 109 -80 408 20 0 0 chr13 3802656 3802705 -98070464 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 184 41 20 chr13 3803638 3803687 -98069482 - L3 LINE CR1 -40 1537 1488 259 349 34 20 chr13 3803689 3803838 -98069331 - L2 LINE L2 0 3272 3122 2464 54 7 0 chr13 3803997 3804293 -98068876 + AluY SINE Alu 1 298 -13 702 275 96 9 chr13 3804327 3804556 -98068613 - MIR SINE MIR -13 249 1 2497 149 23 44 chr13 3804738 3805220 -98067949 - L1MB3 LINE L1 0 6183 5712 202 369 45 5 chr13 3805314 3805536 -98067633 - L2 LINE L2 -662 2652 2422 1996 127 0 10 chr13 3805704 3805995 -98067174 + AluSq SINE Alu 6 293 -20 2135 88 37 7 chr13 3806009 3806305 -98066864 + AluY SINE Alu 1 305 -6 2717 181 81 41 chr13 3806737 3807834 -98065335 + pTR5 LTR ERV1 11 581 -133 234 273 0 15 chr13 3808502 3808568 -98064601 - L1MC5 LINE L1 -48 7913 7849 1328 194 113 40 chr13 3808852 3809198 -98063971 - MLT1A2 LTR MaLR 0 374 4 496 284 68 4 chr13 3809203 3809477 -98063692 - L1MC4 LINE L1 -387 7655 7260 370 239 138 0 chr13 3809582 3809720 -98063449 - L1ME4a LINE L1 0 6121 5965 324 247 0 12 chr13 3810171 3810256 -98062913 + MER5A DNA MER1_type 26 109 -80 464 311 45 0 chr13 3810510 3810687 -98062482 + MIR SINE MIR 78 262 0 4738 158 35 22 chr13 3812872 3813762 -98059407 - L1MB3 LINE L1 0 6183 5283 549 313 77 56 chr13 3816140 3816530 -98056639 + L2 LINE L2 2910 3307 -6 4059 125 88 45 chr13 3816879 3817632 -98055537 + LTR1 LTR ERV1 1 785 0 463 340 184 26 chr13 3817909 3818666 -98054503 - L3 LINE CR1 -665 912 37 4042 112 65 6 chr13 3819376 3820010 -98053159 - L1PA16 LINE L1 -1 6165 5495 22 35 0 0 chr13 3820353 3820382 -98052787 + AT_rich Low_complexity Low_complexity 1 29 0 1649 108 48 4 chr13 3820685 3820953 -98052216 + L1PB4 LINE L1 5333 5612 -544 3423 118 13 104 chr13 3820953 3821035 -98052134 - LTR12 LTR ERV1 -134 580 492 2013 110 18 0 chr13 3821035 3821316 -98051853 - AluY SINE Alu -10 301 16 3423 118 13 104 chr13 3821316 3821870 -98051299 - LTR12 LTR ERV1 -222 492 2 3042 152 42 0 chr13 3821870 3822398 -98050771 + L1PB4 LINE L1 5607 6156 0 281 281 0 0 chr13 3823457 3823521 -98049648 + MER97b DNA MER1_type? 981 1044 -9 2448 80 3 0 chr13 3824855 3825155 -98048014 - AluY SINE Alu -10 301 1 226 250 238 0 chr13 3825155 3825239 -98047930 + MIR3 SINE MIR 102 205 -3 242 268 18 0 chr13 3825322 3825378 -98047791 + L2 LINE L2 3123 3179 -93 1109 158 5 0 chr13 3825436 3825626 -98047543 - L1MA5 LINE L1 0 6300 6110 192 240 60 0 chr13 3827603 3827653 -98045516 + MIR SINE MIR 83 135 -73 201 238 0 0 chr13 3827860 3827902 -98045267 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr13 3828414 3828435 -98044734 + AT_rich Low_complexity Low_complexity 1 21 0 2193 162 11 25 chr13 3831083 3831514 -98041655 + L1MA5 LINE L1 5621 6050 -250 998 117 8 144 chr13 3831493 3831750 -98041419 + L1MB8 LINE L1 5904 6125 -53 * 34 0 0 0 chr13 3831750 3831784 -98041385 + AT_rich Low_complexity Low_complexity 1 34 0 2395 50 3 23 chr13 3832024 3832326 -98040843 + AluY SINE Alu 1 296 -15 2356 74 3 16 chr13 3832754 3833066 -98040103 - AluY SINE Alu -3 308 1 2507 77 0 0 chr13 3833460 3833770 -98039399 - AluY SINE Alu -1 310 1 1581 177 27 17 chr13 3834058 3834357 -98038812 - AluJo SINE Alu -10 302 1 2498 57 0 16 chr13 3834357 3834672 -98038497 - AluY SINE Alu -1 310 1 616 120 23 45 chr13 3834678 3834811 -98038358 - L1MB8 LINE L1 0 6178 6049 2968 144 5 49 chr13 3834986 3835556 -98037613 - L1MA10 LINE L1 0 6334 5790 2571 217 113 31 chr13 3835575 3836325 -98036844 + MER21B LTR ERV1 12 823 -40 284 269 13 0 chr13 3836396 3836474 -98036695 - L1MA10 LINE L1 -385 5783 5705 2438 66 0 3 chr13 3836562 3836866 -98036303 - AluY SINE Alu -6 305 3 509 236 32 74 chr13 3839038 3839254 -98033915 - HAL1 LINE L1 -1 2506 2300 825 211 17 28 chr13 3839449 3839629 -98033540 - MER45A DNA AcHobo 0 178 1 1359 284 136 32 chr13 3839782 3840659 -98032510 - HAL1 LINE L1 -343 2164 1197 306 155 32 0 chr13 3840665 3840740 -98032429 - Alu SINE Alu -3 299 239 297 305 168 31 chr13 3840772 3840966 -98032203 - HAL1 LINE L1 -1364 1143 977 216 97 0 0 chr13 3840966 3840997 -98032172 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 297 305 168 31 chr13 3840997 3841225 -98031944 - HAL1 LINE L1 -1530 977 663 2265 94 0 7 chr13 3842865 3843162 -98030007 + AluY SINE Alu 1 295 -16 220 305 150 55 chr13 3843326 3843526 -98029643 - L2 LINE L2 -833 2481 2263 419 35 18 0 chr13 3843671 3843728 -98029441 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 191 358 90 8 chr13 3843943 3844077 -98029092 - MIR SINE MIR -70 192 48 27 49 0 0 chr13 3845299 3845340 -98027829 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr13 3845539 3845561 -98027608 + AT_rich Low_complexity Low_complexity 1 22 0 1746 177 27 7 chr13 3845563 3845862 -98027307 - AluJb SINE Alu -7 305 1 275 356 9 0 chr13 3846714 3846829 -98026340 - MIR SINE MIR -112 150 35 270 181 57 48 chr13 3846918 3847023 -98026146 - MER113 DNA MER1_type? -301 220 115 186 342 49 53 chr13 3847600 3847904 -98025265 - L2 LINE L2 -6 3307 3005 2255 112 3 3 chr13 3848216 3848528 -98024641 - AluSx SINE Alu 0 312 1 23 0 0 0 chr13 3849529 3849552 -98023617 + GC_rich Low_complexity Low_complexity 1 23 0 181 250 42 0 chr13 3850752 3850800 -98022369 - MIR3 SINE MIR -6 202 153 266 360 18 0 chr13 3850909 3851023 -98022146 - MIR SINE MIR -124 138 23 419 35 18 0 chr13 3852092 3852149 -98021020 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 220 305 150 55 chr13 3852294 3852494 -98020675 + L2 LINE L2 2263 2481 -833 1910 145 3 0 chr13 3852658 3852948 -98020221 - AluSx SINE Alu -16 296 6 222 292 100 17 chr13 3853106 3853226 -98019943 + MIR SINE MIR 67 196 -66 2162 123 0 0 chr13 3853339 3853631 -98019538 - AluSx SINE Alu -20 292 1 2294 134 3 0 chr13 3854427 3854770 -98018399 - L1PA16 LINE L1 -9 6157 5814 786 144 0 0 chr13 3854913 3855038 -98018131 - L1PA16 LINE L1 -558 5608 5484 219 304 14 108 chr13 3855095 3855156 -98018013 - L2 LINE L2 0 3272 3207 2167 81 33 0 chr13 3855156 3855428 -98017741 + AluSq SINE Alu 1 281 -32 240 35 0 0 chr13 3855430 3855459 -98017710 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 219 304 14 108 chr13 3855459 3855542 -98017627 - L2 LINE L2 -66 3206 3139 466 228 53 53 chr13 3855893 3856082 -98017087 - L2 LINE L2 0 3313 3125 1148 249 150 3 chr13 3857034 3857465 -98015704 + MER110A LTR ERV1 3 477 0 2016 153 35 3 chr13 3857573 3857990 -98015179 + L1MC2 LINE L1 5185 5614 -719 462 170 203 17 chr13 3857990 3858115 -98015054 + MLT1A1 LTR MaLR 1 161 -213 6715 94 8 9 chr13 3858121 3858398 -98014771 + L1PA10 LINE L1 4686 4962 -1206 2268 86 0 30 chr13 3858398 3858702 -98014467 + AluY SINE Alu 1 295 -16 6715 94 8 9 chr13 3858702 3859880 -98013289 + L1PA10 LINE L1 4962 6136 -32 714 141 70 8 chr13 3860088 3860216 -98012953 + MLT1A1 LTR MaLR 226 361 -4 3577 169 37 23 chr13 3860221 3860921 -98012248 + L1MC2 LINE L1 5626 6335 -9 276 30 0 0 chr13 3863029 3863062 -98010107 + (TG)n Simple_repeat Simple_repeat 2 34 0 2002 148 3 3 chr13 3863177 3863475 -98009694 + AluJb SINE Alu 1 298 -14 312 252 72 65 chr13 3863683 3863868 -98009301 + LTR48B LTR ERV1 337 634 -10 308 231 141 16 chr13 3865296 3865417 -98007752 - MIR SINE MIR -16 246 111 621 260 39 0 chr13 3865657 3865838 -98007331 + MER20 DNA MER1_type 31 218 -1 2107 104 10 7 chr13 3866156 3866445 -98006724 + AluSg1 SINE Alu 1 290 -19 237 291 88 34 chr13 3866604 3866752 -98006417 + L2 LINE L2 2895 3050 -263 220 288 0 0 chr13 3866777 3866836 -98006333 + L2 LINE L2 3183 3241 -72 404 126 42 36 chr13 3866887 3867054 -98006115 + (TG)n Simple_repeat Simple_repeat 2 169 0 300 120 53 27 chr13 3867159 3867309 -98005860 + (TG)n Simple_repeat Simple_repeat 1 154 0 245 167 52 31 chr13 3867330 3867426 -98005743 + (TG)n Simple_repeat Simple_repeat 1 98 0 4151 128 79 19 chr13 3868777 3869518 -98003651 + LTR1 LTR ERV1 16 785 0 190 256 0 0 chr13 3871040 3871079 -98002090 - L3 LINE CR1 -6 1571 1533 1020 204 50 11 chr13 3871336 3871596 -98001573 + MER33 DNA MER1_type 17 286 -38 189 121 0 0 chr13 3872520 3872553 -98000616 + (CAAAG)n Simple_repeat Simple_repeat 2 34 0 2250 122 0 0 chr13 3873462 3873765 -97999404 + AluSx SINE Alu 1 303 -9 327 49 0 0 chr13 3875757 3875798 -97997371 + (TG)n Simple_repeat Simple_repeat 1 41 0 362 57 19 0 chr13 3875914 3875967 -97997202 + (TG)n Simple_repeat Simple_repeat 1 54 0 2055 177 64 3 chr13 3876450 3876847 -97996322 + MSTB LTR MaLR 1 356 -8 28 0 0 0 chr13 3877278 3877306 -97995863 + AT_rich Low_complexity Low_complexity 1 28 0 1174 225 62 34 chr13 3878252 3878608 -97994561 - MLT1A2 LTR MaLR -8 366 1 955 164 0 7 chr13 3878876 3879028 -97994141 - AluJb SINE Alu -20 292 142 230 222 16 16 chr13 3879199 3879262 -97993907 + (CATA)n Simple_repeat Simple_repeat 4 66 0 473 226 6 17 chr13 3879264 3879445 -97993724 + (CA)n Simple_repeat Simple_repeat 2 180 0 239 284 0 6 chr13 3879472 3879634 -97993535 + (CA)n Simple_repeat Simple_repeat 2 162 0 252 284 11 21 chr13 3879640 3879735 -97993434 + (CATA)n Simple_repeat Simple_repeat 3 96 0 271 261 15 0 chr13 3879743 3879877 -97993292 + (CA)n Simple_repeat Simple_repeat 1 136 0 2314 72 0 39 chr13 3881627 3881934 -97991235 + AluY SINE Alu 1 295 -16 1334 110 94 0 chr13 3882427 3882618 -97990551 - AluSx SINE Alu -99 213 5 23 54 0 0 chr13 3884934 3884971 -97988198 + AT_rich Low_complexity Low_complexity 1 37 0 302 333 69 10 chr13 3885406 3885508 -97987661 - HAL1 LINE L1 -1040 1467 1360 291 238 38 12 chr13 3885515 3885595 -97987574 + MER5A DNA MER1_type 102 183 -6 435 228 203 19 chr13 3885685 3885843 -97987326 + MER5A DNA MER1_type 1 187 -2 519 269 167 6 chr13 3885857 3886013 -97987156 - MER5A DNA MER1_type -5 184 4 181 289 0 0 chr13 3886225 3886270 -97986899 + L2 LINE L2 3269 3313 0 7294 33 0 5 chr13 3889646 3890504 -97982665 + L1PA4 LINE L1 5301 6154 -1 337 356 46 8 chr13 3891942 3892006 -97981163 + L2 LINE L2 2815 2875 -397 2510 138 74 2 chr13 3892006 3892426 -97980743 - LTR47A LTR ERVL 0 452 3 337 356 46 8 chr13 3892426 3892600 -97980569 + L2 LINE L2 2875 3062 -210 272 280 63 74 chr13 3893084 3893259 -97979910 - MLT1I LTR MaLR -2 407 235 4114 155 93 22 chr13 3893605 3894101 -97979068 - MER6 DNA MER2_type 0 865 289 192 77 0 0 chr13 3894101 3894127 -97979042 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 4114 155 93 22 chr13 3894127 3894436 -97978733 - MER6 DNA MER2_type -576 289 3 265 310 100 0 chr13 3895040 3895140 -97978029 - L2 LINE L2 -40 3273 3164 204 273 156 13 chr13 3895339 3895416 -97977753 + L2 LINE L2 3185 3272 0 644 100 8 0 chr13 3895605 3895725 -97977444 + (TG)n Simple_repeat Simple_repeat 2 122 0 1824 166 0 16 chr13 3897310 3897617 -97975552 + AluJb SINE Alu 1 302 -10 381 381 40 6 chr13 3898186 3898359 -97974810 - MER5A DNA MER1_type -10 179 1 2287 112 3 3 chr13 3899997 3900309 -97972860 + AluSx SINE Alu 1 312 0 283 338 49 56 chr13 3900621 3900926 -97972243 + L2 LINE L2 3005 3307 -6 320 356 9 0 chr13 3901697 3901812 -97971357 + MIR SINE MIR 35 150 -112 1787 181 26 7 chr13 3902664 3902968 -97970201 + AluJb SINE Alu 1 310 -2 27 49 0 0 chr13 3903186 3903227 -97969942 + AT_rich Low_complexity Low_complexity 1 41 0 265 314 83 58 chr13 3903760 3904076 -97969093 - L2 LINE L2 -218 3054 2716 248 335 149 16 chr13 3904446 3904634 -97968535 + MIR SINE MIR 44 256 -6 419 35 18 0 chr13 3904798 3904855 -97968314 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 272 305 150 55 chr13 3905000 3905200 -97967969 + L2 LINE L2 2263 2481 -833 2402 85 0 0 chr13 3905363 3905658 -97967511 - AluY SINE Alu -16 295 1 1033 263 83 97 chr13 3906223 3906924 -97966245 + MER21B LTR ERV1 24 714 -149 216 327 0 0 chr13 3907401 3907453 -97965716 - L3 LINE CR1 -7 1570 1519 192 216 0 0 chr13 3907464 3907501 -97965668 + L2 LINE L2 3276 3312 -1 180 246 40 103 chr13 3907499 3907625 -97965544 - MIR SINE MIR -73 135 18 * 194 348 29 0 chr13 3908714 3908783 -97964386 + MIR SINE MIR 79 149 -113 5645 123 229 81 chr13 3908820 3910297 -97962872 - pTR5 LTR ERV1 0 2438 743 499 268 0 0 chr13 3911527 3911639 -97961530 - MIR SINE MIR -88 174 63 259 284 16 94 chr13 3911863 3911990 -97961179 - MLT1L LTR MaLR -248 367 251 679 152 0 9 chr13 3912503 3912608 -97960561 - AluSg/x SINE Alu -13 299 196 287 342 36 9 chr13 3912610 3912738 -97960431 - MIR SINE MIR -62 146 18 220 194 0 0 chr13 3913829 3913865 -97959304 + polypurine Low_complexity Low_complexity 4 39 0 339 292 93 6 chr13 3914149 3914310 -97958859 + MER91A DNA MER1_type 19 193 -3 225 335 300 0 chr13 3914547 3914717 -97958452 + MIR SINE MIR 9 229 -33 2157 161 106 3 chr13 3915905 3916291 -97956878 - MSTB LTR MaLR 0 426 1 1446 190 52 78 chr13 3916458 3916858 -97956311 + MLT1B LTR MaLR 1 390 0 1666 106 136 4 chr13 3917505 3917770 -97955399 + AluY SINE Alu 1 300 -1 703 291 36 47 chr13 3918116 3918381 -97954788 - MIR SINE MIR -1 261 5 21 71 0 0 chr13 3918670 3918712 -97954457 + AT_rich Low_complexity Low_complexity 1 42 0 2242 96 0 26 chr13 3918697 3919016 -97954153 - AluSq SINE Alu -2 311 5 2617 105 3 6 chr13 3919379 3919742 -97953427 - L1PB1 LINE L1 -7 6860 6499 498 126 0 27 chr13 3919743 3919854 -97953315 + (TA)n Simple_repeat Simple_repeat 1 108 0 317 100 117 0 chr13 3919854 3919914 -97953255 - L1PB1 LINE L1 -360 6507 6441 44853 39 2 6 chr13 3919917 3926096 -97947073 - L1PA3 LINE L1 0 6155 1 15686 167 35 11 chr13 3926096 3931312 -97941857 - L1PB1 LINE L1 -412 6455 1102 1545 141 114 15 chr13 3931340 3931603 -97941566 - AluJo SINE Alu -23 289 1 237 234 135 50 chr13 3931610 3931751 -97941418 - L1ME LINE L1 -392 5761 5609 2255 99 0 3 chr13 3931772 3932066 -97941103 - AluY SINE Alu -16 295 3 351 273 146 19 chr13 3932372 3932687 -97940482 - L1ME LINE L1 -805 5324 4970 428 256 45 23 chr13 3932938 3933114 -97940055 - L1ME LINE L1 -4980 1139 960 207 162 48 9 chr13 3933119 3933224 -97939945 + (TA)n Simple_repeat Simple_repeat 1 109 0 818 178 0 0 chr13 3933240 3933375 -97939794 - FRAM SINE Alu -5 171 37 819 298 111 46 chr13 3933872 3934583 -97938586 - L1ME LINE L1 -5328 791 35 2226 108 3 6 chr13 3935144 3935458 -97937711 + AluSp SINE Alu 1 313 0 214 344 0 0 chr13 3935575 3935636 -97937533 - L2 LINE L2 -26 3287 3227 201 171 0 0 chr13 3936395 3936430 -97936739 + A-rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr13 3938163 3938185 -97934984 + AT_rich Low_complexity Low_complexity 1 22 0 580 196 0 105 chr13 3938891 3939044 -97934125 - Charlie1 DNA MER1_type -2 2759 2623 * 757 236 107 9 chr13 3939031 3939247 -97933922 - Charlie1 DNA MER1_type -2522 239 3 275 366 53 0 chr13 3939329 3939460 -97933709 + MIR SINE MIR 8 145 -117 1652 159 0 0 chr13 3940696 3940947 -97932222 - AluSx SINE Alu -31 281 31 1571 191 31 72 chr13 3940948 3941353 -97931816 - LTR12 LTR ERV1 -234 1800 100 266 198 59 79 chr13 3941354 3941455 -97931714 - AluS SINE Alu -227 75 1 1450 133 7 81 chr13 3941463 3941734 -97931435 - AluJo SINE Alu -24 288 38 273 281 70 35 chr13 3941759 3941873 -97931296 + MIR SINE MIR 30 147 -115 222 363 22 0 chr13 3942096 3942187 -97930982 - MIR SINE MIR -93 115 23 * 950 245 4 13 chr13 3942184 3942417 -97930752 + MIR SINE MIR 32 262 0 363 269 11 0 chr13 3945907 3946000 -97927169 + MIR SINE MIR 120 213 -49 459 0 0 0 chr13 3946407 3946458 -97926711 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 183 42 0 0 chr13 3946458 3946482 -97926687 + (TC)n Simple_repeat Simple_repeat 1 24 0 2296 82 14 0 chr13 3946482 3946775 -97926394 - AluY SINE Alu -14 297 1 246 119 24 0 chr13 3947116 3947158 -97926011 - L2 LINE L2 0 3313 3271 284 0 28 0 chr13 3948522 3948558 -97924611 + (TG)n Simple_repeat Simple_repeat 2 38 0 294 291 150 9 chr13 3949726 3949870 -97923299 + MIR SINE MIR 13 162 -67 706 285 214 17 chr13 3950177 3951035 -97922134 - L2 LINE L2 -5 3308 2271 369 0 0 0 chr13 3952402 3952443 -97920726 + (CA)n Simple_repeat Simple_repeat 1 41 0 420 55 0 0 chr13 3952628 3952683 -97920486 + (TG)n Simple_repeat Simple_repeat 2 56 0 185 356 52 9 chr13 3954970 3955085 -97918084 + L2 LINE L2 3153 3272 0 282 224 48 79 chr13 3956774 3956863 -97916306 + L1ME4a LINE L1 5959 6042 -79 2443 83 0 3 chr13 3956863 3957175 -97915994 - AluY SINE Alu 0 311 1 282 224 48 79 chr13 3957175 3957250 -97915919 + L1ME4a LINE L1 6042 6118 -3 226 221 156 13 chr13 3957517 3957594 -97915575 - HsTC2 DNA Tc2 -1809 89 2 698 313 24 12 chr13 3957635 3957884 -97915285 + L1M4 LINE L1 3614 3865 -2281 1044 246 98 20 chr13 3958402 3958842 -97914327 + L1M4 LINE L1 3997 4470 -1676 10185 160 42 15 chr13 3958842 3960651 -97912518 + Tigger4(Zombi) DNA MER2_type 1 1858 -873 328 181 193 0 chr13 3961719 3961802 -97911367 - MER5A DNA MER1_type -77 112 14 325 98 0 0 chr13 3962993 3963044 -97910125 + L1MA3 LINE L1 6124 6174 -131 272 313 0 0 chr13 3963867 3963934 -97909235 + polypyrimidine Low_complexity Low_complexity 3 69 0 2291 257 69 35 chr13 3964085 3964953 -97908216 - L1ME1 LINE L1 -15 6220 5323 520 240 76 20 chr13 3964964 3965214 -97907955 - L1ME1 LINE L1 -1229 4986 4723 547 272 86 50 chr13 3966408 3966827 -97906342 - L1ME1 LINE L1 -1907 4308 3875 717 300 69 23 chr13 3966848 3967371 -97905798 - L1ME1 LINE L1 -3248 2967 2421 2367 96 0 0 chr13 3967495 3967797 -97905372 - AluSg SINE Alu -8 302 1 289 213 124 41 chr13 3967797 3967966 -97905203 - L1ME1 LINE L1 -4099 2297 2115 367 137 27 0 chr13 3968130 3968203 -97904966 + GA-rich Low_complexity Low_complexity 2 76 0 376 282 143 32 chr13 3968239 3968428 -97904741 - L1ME1 LINE L1 -4595 1801 1584 2156 97 6 59 chr13 3968428 3968749 -97904420 - AluSq SINE Alu -9 304 1 376 282 143 32 chr13 3968749 3968775 -97904394 - L1ME1 LINE L1 -4812 1584 1562 1295 174 98 98 chr13 3968818 3969279 -97903890 + LTR1 LTR ERV1 1 461 -324 980 119 26 7 chr13 3969282 3969433 -97903736 + LTR1 LTR ERV1 632 785 0 272 273 120 24 chr13 3969501 3969710 -97903459 - L1ME1 LINE L1 -4897 1499 1271 616 271 42 47 chr13 3970267 3970459 -97902710 + MER58D DNA MER1_type 2 192 -194 331 281 0 22 chr13 3970459 3970548 -97902621 + MLT1D LTR MaLR 1 87 -539 987 236 65 11 chr13 3970596 3970859 -97902310 + MLT1C LTR MaLR 1 277 -190 676 160 9 0 chr13 3971014 3971120 -97902049 - MLT1D LTR MaLR -398 107 1 693 169 30 60 chr13 3971121 3971303 -97901866 + MLT1C LTR MaLR 304 463 -4 1180 227 15 91 chr13 3971329 3971734 -97901435 + MLT1D LTR MaLR 132 505 0 846 180 52 21 chr13 3971734 3971927 -97901242 + MER58D DNA MER1_type 188 386 0 2106 186 10 18 chr13 3975313 3975712 -97897457 + MSTD LTR MaLR 1 396 0 443 277 0 27 chr13 3976083 3976267 -97896902 + (TG)n Simple_repeat Simple_repeat 2 180 0 386 309 0 0 chr13 3976299 3976467 -97896702 + (TG)n Simple_repeat Simple_repeat 2 169 0 357 286 17 11 chr13 3976543 3976721 -97896448 + (TG)n Simple_repeat Simple_repeat 1 179 0 239 0 32 0 chr13 3978407 3978438 -97894731 + (CA)n Simple_repeat Simple_repeat 1 32 0 190 318 112 0 chr13 3979852 3979959 -97893210 - L2 LINE L2 0 3272 3154 243 284 99 0 chr13 3980775 3980856 -97892313 - L2 LINE L2 -15 3298 3210 210 118 0 0 chr13 3981192 3981226 -97891943 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 141 106 62 chr13 3981345 3981635 -97891534 - LTR47A LTR ERVL 0 452 135 2126 113 10 7 chr13 3981635 3981944 -97891225 - AluSq SINE Alu -3 310 1 1804 141 106 62 chr13 3981944 3982086 -97891083 - LTR47A LTR ERVL -317 135 1 1949 149 52 19 chr13 3983343 3983706 -97889463 - THE1C LTR MaLR 0 375 1 435 98 0 49 chr13 3983706 3983788 -97889381 - THE1C-int LTR MaLR 0 1580 1503 9063 122 68 9 chr13 3983934 3985320 -97887849 - THE1C-int LTR MaLR -112 1468 1 1863 122 70 57 chr13 3985320 3985690 -97887479 - THE1C LTR MaLR 0 375 1 2300 66 11 0 chr13 3988835 3989159 -97884010 - AluYb8 SINE Alu 0 327 1 2194 123 0 13 chr13 3989806 3990116 -97883053 - AluSx SINE Alu -6 306 1 1701 113 52 8 chr13 3990757 3991031 -97882138 - AluSx SINE Alu 0 312 38 229 368 26 0 chr13 3991783 3991897 -97881272 + MIR SINE MIR 32 148 -114 269 140 18 0 chr13 3992061 3992118 -97881051 + CT-rich Low_complexity Low_complexity 1 58 0 1907 129 14 10 chr13 3992118 3992413 -97880756 - AluSx SINE Alu -4 308 13 183 42 0 0 chr13 3992413 3992437 -97880732 + (GCCTG)n Simple_repeat Simple_repeat 1 24 0 2382 98 0 0 chr13 3992442 3992739 -97880430 - AluSx SINE Alu -11 301 5 186 118 0 0 chr13 3994241 3994275 -97878894 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 68 0 0 chr13 3995303 3995347 -97877822 - AluSp/q SINE Alu -36 267 224 1668 128 15 11 chr13 3996867 3997132 -97876037 - Tigger2 DNA MER2_type -10 2708 2443 4549 142 16 19 chr13 3997199 3997947 -97875222 - Tigger2 DNA MER2_type -1972 746 1 213 139 0 0 chr13 3998725 3998768 -97874401 + (TC)n Simple_repeat Simple_repeat 2 44 0 318 111 0 0 chr13 3999619 3999664 -97873505 - L1MA5 LINE L1 -412 5888 5844 2950 260 143 40 chr13 3999664 4001330 -97871839 - L1M4 LINE L1 -768 5378 3540 847 250 14 111 chr13 4001338 4001682 -97871487 + MLT1D-int LTR MaLR 1055 1365 -6 730 176 38 109 chr13 4001691 4001929 -97871240 + MLT1D LTR MaLR 1 221 -284 287 326 45 7 chr13 4001952 4002218 -97870951 + L2 LINE L2 2933 3272 0 202 274 32 0 chr13 4002951 4003013 -97870156 - L2 LINE L2 0 3272 3209 2469 65 13 3 chr13 4003338 4003645 -97869524 - AluY SINE Alu -1 310 1 2191 91 0 60 chr13 4003948 4004267 -97868902 - AluSx SINE Alu -12 300 1 25 0 0 0 chr13 4004267 4004292 -97868877 + AT_rich Low_complexity Low_complexity 1 25 0 3077 127 52 2 chr13 4004292 4004787 -97868382 - L1MA3 LINE L1 0 6305 5786 713 93 0 9 chr13 4004887 4004995 -97868174 + L1PA8 LINE L1 6066 6172 0 1985 118 75 31 chr13 4006030 4006379 -97866790 - THE1B LTR MaLR 0 364 1 11518 105 6 1 chr13 4006379 4007952 -97865217 - THE1B-int LTR MaLR 0 1580 1 1586 147 28 28 chr13 4007952 4008237 -97864932 - THE1B LTR MaLR 0 364 80 449 119 81 0 chr13 4008368 4008528 -97864641 + (TA)n Simple_repeat Simple_repeat 1 173 0 474 180 19 1 chr13 4008528 4008632 -97864537 + Tigger4(Zombi) DNA MER2_type 228 2731 0 501 244 12 47 chr13 4008633 4008805 -97864364 + L1ME2 LINE L1 4470 4635 -1511 25 83 0 0 chr13 4008818 4008878 -97864291 + AT_rich Low_complexity Low_complexity 1 60 0 1333 262 33 5 chr13 4008904 4009331 -97863838 + L1ME2 LINE L1 4615 5053 -1093 1258 196 4 43 chr13 4009331 4009612 -97863557 + AluSg SINE Alu 39 308 -2 3182 249 51 8 chr13 4009613 4010682 -97862487 + L1ME2 LINE L1 5031 6153 -11 336 312 109 10 chr13 4010877 4011079 -97862090 + MIR SINE MIR 35 256 -6 199 296 45 61 chr13 4011117 4011249 -97861920 + L2 LINE L2 2932 3061 -211 1511 101 0 10 chr13 4011297 4011506 -97861663 - AluY SINE Alu -10 301 95 342 339 8 0 chr13 4061665 4061792 -97811377 - L2 LINE L2 -708 2606 2479 4061 154 112 96 chr13 4062338 4062632 -97810537 - L1MC3 LINE L1 -7 7778 7490 2070 87 0 4 chr13 4062632 4062909 -97810260 - AluY SINE Alu -15 296 21 4061 154 112 96 chr13 4062909 4063193 -97809976 - L1MC3 LINE L1 -295 7490 7212 347 256 0 0 chr13 4063193 4063275 -97809894 - MLT1F1 LTR MaLR -450 117 36 4061 154 112 96 chr13 4063275 4063672 -97809497 - L1MC3 LINE L1 -573 7212 6704 198 319 104 39 chr13 4063825 4064085 -97809084 + L2 LINE L2 2322 2598 -716 966 300 61 34 chr13 4064545 4064685 -97808484 - L2 LINE L2 -4 3309 3174 1042 181 229 3 chr13 4064685 4064977 -97808192 + MER46B DNA MER2_type 4 236 0 966 300 61 34 chr13 4064977 4065246 -97807923 - L2 LINE L2 -139 3174 2889 688 295 182 12 chr13 4065249 4065568 -97807601 - L2 LINE L2 -973 2341 1969 751 313 40 4 chr13 4065595 4065822 -97807347 - MIR SINE MIR -22 240 6 585 316 73 25 chr13 4065817 4066216 -97806953 - L2 LINE L2 -1332 1982 1565 * 192 307 40 0 chr13 4068395 4068470 -97804699 - MIR3 SINE MIR -24 184 107 591 270 93 31 chr13 4068868 4069096 -97804073 - MIR SINE MIR -10 252 14 258 287 0 0 chr13 4070083 4070226 -97802943 + (TA)n Simple_repeat Simple_repeat 1 143 0 2839 154 19 4 chr13 4072395 4072870 -97800299 - L1PB4 LINE L1 0 6156 5675 1176 171 0 33 chr13 4072871 4073082 -97800087 - AluJo SINE Alu -8 304 101 1838 160 6 25 chr13 4073235 4073553 -97799616 + AluJb SINE Alu 1 312 0 2198 120 13 0 chr13 4074900 4075200 -97797969 + AluSc SINE Alu 1 304 -5 2606 193 38 13 chr13 4078839 4079369 -97793800 - MER44D DNA MER2_type 0 605 8 201 311 194 0 chr13 4079399 4079502 -97793667 - MIR SINE MIR -74 188 66 240 282 0 14 chr13 4080267 4080338 -97792831 - MIR SINE MIR -66 142 73 244 241 0 0 chr13 4080371 4080429 -97792740 + T-rich Low_complexity Low_complexity 1 58 0 208 342 49 60 chr13 4081941 4082371 -97790798 - L2 LINE L2 -6 3266 2842 207 273 75 62 chr13 4083753 4083914 -97789255 + MIR SINE MIR 50 212 -50 437 302 47 31 chr13 4084109 4084367 -97788802 + L3 LINE CR1 1315 1576 -1 269 331 50 14 chr13 4084525 4084664 -97788505 - L3 LINE CR1 -2 1575 1432 186 254 36 0 chr13 4086559 4086614 -97786555 - L2 LINE L2 -2 3311 3255 240 175 63 63 chr13 4088594 4088657 -97784512 - MLT1I LTR MaLR -33 376 314 2539 72 0 0 chr13 4089208 4089515 -97783654 - AluY SINE Alu -4 307 1 212 329 127 0 chr13 4090826 4090905 -97782264 + L2 LINE L2 3147 3235 -37 309 165 16 50 chr13 4090952 4091073 -97782096 + GA-rich Low_complexity Low_complexity 4 120 0 187 281 130 75 chr13 4093106 4093491 -97779678 + L2 LINE L2 2572 2977 -337 472 293 213 10 chr13 4093907 4094207 -97778962 + MLT1J LTR MaLR 1 361 -150 356 274 10 0 chr13 4095142 4095244 -97777925 - MIR SINE MIR -112 150 48 1650 188 38 0 chr13 4095834 4096122 -97777047 + AluJb SINE Alu 5 303 -9 1746 118 57 18 chr13 4099172 4099451 -97773718 - AluSx SINE Alu -10 302 13 231 86 0 29 chr13 4100750 4100785 -97772384 - HAL1 LINE L1 -2188 319 286 2706 127 26 5 chr13 4101650 4102069 -97771100 - MSTA LTR MaLR 0 428 1 259 273 0 45 chr13 4103223 4103311 -97769858 + MER112 DNA MER1_type 144 227 -33 1431 219 95 24 chr13 4105605 4105975 -97767194 + MSTD LTR MaLR 1 396 0 6860 239 35 35 chr13 4105979 4107706 -97765463 + MSTD-int LTR MaLR 4 1730 -5 1310 204 139 14 chr13 4107711 4108063 -97765106 + MSTD LTR MaLR 1 396 0 335 169 14 0 chr13 4108237 4108308 -97764861 + CT-rich Low_complexity Low_complexity 1 72 0 189 0 0 0 chr13 4108308 4108329 -97764840 + (TTTCC)n Simple_repeat Simple_repeat 4 24 0 22 35 0 0 chr13 4108350 4108379 -97764790 + AT_rich Low_complexity Low_complexity 1 29 0 411 163 25 0 chr13 4109768 4109848 -97763321 - AluS SINE Alu -1 308 227 282 29 0 0 chr13 4109866 4109901 -97763268 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 2074 110 0 24 chr13 4109901 4110188 -97762981 - AluSx SINE Alu -32 280 1 264 200 20 60 chr13 4110255 4110355 -97762814 - L1MC5 LINE L1 -48 7913 7818 646 75 0 0 chr13 4110575 4110669 -97762500 - AluY SINE Alu -1 310 217 229 343 75 8 chr13 4111565 4111699 -97761470 + MIR SINE MIR 39 181 -81 3345 187 31 26 chr13 4111962 4112678 -97760491 + LTR62 LTR ERVK 1 719 0 214 282 19 58 chr13 4112945 4113048 -97760121 - MIR SINE MIR -94 114 16 211 343 12 4 chr13 4113956 4114073 -97759096 + MIR SINE MIR 37 154 -67 900 259 34 7 chr13 4115441 4115734 -97757435 + L1M4 LINE L1 2950 3250 -2896 1270 189 95 5 chr13 4116753 4117181 -97755988 - LTR54 LTR ERV1 -1 497 1 25 83 0 0 chr13 4118095 4118155 -97755014 + AT_rich Low_complexity Low_complexity 1 60 0 227 79 26 0 chr13 4119673 4119711 -97753458 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1635 163 13 67 chr13 4119869 4120182 -97752987 + AluJo SINE Alu 13 308 -4 234 323 113 8 chr13 4121439 4121563 -97751606 + MIR SINE MIR 92 228 -34 2104 118 3 3 chr13 4121615 4121911 -97751258 - AluSx SINE Alu -16 296 1 276 255 10 82 chr13 4124066 4124164 -97749005 - MIR SINE MIR -18 244 154 351 113 0 0 chr13 4127601 4127654 -97745515 + (TG)n Simple_repeat Simple_repeat 2 54 0 1560 185 18 14 chr13 4127659 4127940 -97745229 - AluJo SINE Alu -30 282 1 3887 60 2 36 chr13 4128751 4129284 -97743885 - L1PA6 LINE L1 -5 6149 5635 564 249 11 28 chr13 4129675 4129852 -97743317 - MLT1A1 LTR MaLR -15 359 186 1016 173 0 12 chr13 4129867 4130040 -97743129 - FRAM SINE Alu -5 171 1 866 160 0 0 chr13 4130048 4130192 -97742977 - MLT1A1 LTR MaLR -220 145 2 206 328 31 0 chr13 4130831 4130895 -97742274 - L2 LINE L2 -70 3202 3137 344 157 41 27 chr13 4132041 4132188 -97740981 + (CA)n Simple_repeat Simple_repeat 1 149 0 346 211 45 30 chr13 4132199 4132332 -97740837 + (CA)n Simple_repeat Simple_repeat 1 135 0 238 172 35 23 chr13 4132345 4132432 -97740737 + (CA)n Simple_repeat Simple_repeat 1 88 0 875 287 137 45 chr13 4134055 4134588 -97738581 - MLT1G1 LTR MaLR 0 595 14 325 342 9 60 chr13 4134777 4134993 -97738176 - MIR3 SINE MIR -55 207 5 240 300 82 17 chr13 4136286 4136519 -97736650 + L1MEd LINE L1 901 1148 -4971 318 302 20 40 chr13 4136659 4136907 -97736262 + HAL1 LINE L1 1427 1669 -838 180 0 0 0 chr13 4137603 4137623 -97735546 + (TC)n Simple_repeat Simple_repeat 2 21 0 234 0 0 0 chr13 4137632 4137658 -97735511 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2363 73 3 0 chr13 4137661 4137949 -97735220 - AluY SINE Alu -22 289 1 324 351 57 16 chr13 4137961 4138206 -97734963 - L1ME LINE L1 -346 5816 5562 295 301 95 73 chr13 4141230 4141642 -97731527 - L2 LINE L2 -8 3264 2844 26 0 0 0 chr13 4142106 4142132 -97731037 + AT_rich Low_complexity Low_complexity 1 26 0 742 185 64 0 chr13 4142133 4142306 -97730863 - L1MA9 LINE L1 -46 6266 6083 1469 236 87 8 chr13 4142491 4143177 -97729992 + L1ME1 LINE L1 5002 5740 -426 509 244 88 42 chr13 4143272 4143510 -97729659 + L1ME1 LINE L1 5913 6161 -5 332 293 143 7 chr13 4143804 4143951 -97729218 - MIR SINE MIR -3 259 93 1496 274 16 16 chr13 4144222 4144737 -97728432 - L1ME1 LINE L1 -20 6146 5632 524 233 131 64 chr13 4144748 4145311 -97727858 - L1ME LINE L1 -5049 1034 459 234 111 19 56 chr13 4145452 4145506 -97727663 - L1ME LINE L1 -5685 385 334 202 205 26 0 chr13 4145628 4145667 -97727502 + GA-rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr13 4146468 4146490 -97726679 + AT_rich Low_complexity Low_complexity 1 22 0 678 329 49 23 chr13 4147341 4147645 -97725524 - L2 LINE L2 -4 3309 2998 253 212 96 111 chr13 4148159 4148357 -97724812 - MLT1J LTR MaLR -193 318 124 1327 227 79 67 chr13 4148398 4148932 -97724237 + MLT1F1 LTR MaLR 3 567 0 441 256 140 43 chr13 4149830 4149954 -97723215 - MIR SINE MIR -16 246 135 2166 121 7 7 chr13 4149954 4150261 -97722908 + AluSq SINE Alu 1 307 -6 441 256 140 43 chr13 4150261 4150343 -97722826 - MIR SINE MIR -127 135 20 553 309 45 22 chr13 4151457 4151680 -97721489 + MIR SINE MIR 35 262 0 323 381 23 23 chr13 4151693 4151866 -97721303 - MIR SINE MIR -71 191 19 23 0 0 0 chr13 4151924 4151947 -97721222 + AT_rich Low_complexity Low_complexity 1 23 0 613 348 163 12 chr13 4152643 4153227 -97719942 - L3 LINE CR1 -5 1572 901 358 117 0 39 chr13 4153269 4153346 -97719823 + (TCCCC)n Simple_repeat Simple_repeat 5 78 0 192 305 136 24 chr13 4153347 4153560 -97719609 - L3 LINE CR1 -701 876 640 609 291 110 89 chr13 4154115 4154805 -97718364 + HAL1 LINE L1 897 1608 -899 2293 93 0 7 chr13 4154805 4155105 -97718064 - AluSx SINE Alu -14 298 1 609 291 110 89 chr13 4155105 4155221 -97717948 + HAL1 LINE L1 1608 1720 -787 265 279 158 36 chr13 4155893 4156223 -97716946 + L1M4 LINE L1 2650 3019 -3127 541 352 109 28 chr13 4156256 4156759 -97716410 - L3 LINE CR1 -881 696 153 180 0 0 0 chr13 4156876 4156896 -97716273 + (T)n Simple_repeat Simple_repeat 1 20 0 231 302 73 10 chr13 4157167 4157263 -97715906 - L2 LINE L2 -34 3279 3178 2273 105 26 0 chr13 4160234 4160538 -97712631 + AluSx SINE Alu 1 312 0 335 298 19 10 chr13 4161280 4161384 -97711785 - MER5B DNA MER1_type -73 105 1 2253 186 21 5 chr13 4162128 4162547 -97710622 - MSTB LTR MaLR 0 426 1 514 311 45 70 chr13 4163643 4164091 -97709078 + L1M4 LINE L1 2853 3289 -2857 205 75 50 0 chr13 4165424 4165464 -97707705 + GA-rich Low_complexity Low_complexity 2 43 0 450 0 0 0 chr13 4165468 4165518 -97707651 + (TG)n Simple_repeat Simple_repeat 2 51 0 414 0 0 0 chr13 4166080 4166126 -97707043 + (CA)n Simple_repeat Simple_repeat 2 47 0 247 111 0 0 chr13 4166144 4166180 -97706989 + MLT2C2 LTR ERVL 429 464 0 2134 207 32 22 chr13 4166180 4166717 -97706452 - L1MB7 LINE L1 -256 6164 5623 * 5249 242 88 42 chr13 4166715 4167067 -97706102 - L1MB7 LINE L1 -2002 4380 4046 1543 203 3 20 chr13 4167067 4167362 -97705807 + AluJo SINE Alu 1 290 -22 5249 242 88 42 chr13 4167362 4171011 -97702158 - L1MB7 LINE L1 -2336 4046 68 405 0 0 0 chr13 4171011 4171056 -97702113 + (TG)n Simple_repeat Simple_repeat 2 46 0 5249 242 88 42 chr13 4171056 4171126 -97702043 - L1MB7 LINE L1 -6314 68 3 202 259 17 0 chr13 4172703 4172761 -97700408 + (TA)n Simple_repeat Simple_repeat 1 59 0 210 347 0 16 chr13 4173818 4173939 -97699230 + CT-rich Low_complexity Low_complexity 4 122 0 1085 207 95 0 chr13 4174319 4174573 -97698596 - MER110 LTR ERV1 -172 319 1 1257 246 163 20 chr13 4175371 4175777 -97697392 + L3 LINE CR1 1111 1574 -3 4390 187 48 14 chr13 4176128 4177026 -97696143 - L1MA7 LINE L1 -32 6259 5332 241 296 65 19 chr13 4177104 4177212 -97695957 + L2 LINE L2 3099 3211 -61 897 214 67 0 chr13 4178736 4178937 -97694232 + AluJo SINE Alu 96 308 0 219 184 0 41 chr13 4179530 4179579 -97693590 + CT-rich Low_complexity Low_complexity 4 50 0 21 0 0 0 chr13 4179928 4179949 -97693220 + AT_rich Low_complexity Low_complexity 1 21 0 422 296 122 13 chr13 4181168 4181398 -97691771 + MIR SINE MIR 7 261 -1 186 353 50 34 chr13 4181422 4181541 -97691628 - L2 LINE L2 -193 3079 2959 1196 305 117 54 chr13 4181620 4182770 -97690399 - L2 LINE L2 -444 2870 1611 345 47 0 0 chr13 4182770 4182813 -97690356 + (TG)n Simple_repeat Simple_repeat 2 44 0 1196 305 117 54 chr13 4182813 4183087 -97690082 - L2 LINE L2 -1703 1611 1356 590 262 43 0 chr13 4183120 4183284 -97689885 - MIR SINE MIR -3 259 89 2830 236 85 29 chr13 4183657 4183864 -97689305 - L1ME1 LINE L1 -5 6161 5967 1922 198 3 40 chr13 4183864 4184243 -97688926 - MLT1A1 LTR MaLR 0 365 1 2830 236 85 29 chr13 4184243 4185761 -97687408 - L1ME1 LINE L1 -199 5967 4358 * 3031 186 43 9 chr13 4185745 4186389 -97686780 - L1MC3 LINE L1 0 7785 7120 284 213 11 43 chr13 4186436 4186530 -97686639 + (CATA)n Simple_repeat Simple_repeat 2 92 0 2987 85 28 5 chr13 4186533 4186933 -97686236 - MLT2A2 LTR ERVL -44 409 1 8573 186 44 35 chr13 4186933 4187933 -97685236 - L1MC3 LINE L1 -660 7125 6099 3244 133 54 4 chr13 4187933 4188437 -97684732 - L1PB1 LINE L1 -3 6148 5620 8573 186 44 35 chr13 4188437 4189291 -97683878 - L1MC3 LINE L1 -1686 6099 5254 9333 35 10 3 chr13 4189338 4191189 -97681980 - L1PA3 LINE L1 -2 6153 4293 331 322 119 30 chr13 4192647 4192849 -97680320 - MIR SINE MIR -33 229 10 205 371 36 29 chr13 4192876 4193016 -97680153 + MER91A DNA MER1_type 1 141 -55 24 0 0 0 chr13 4195048 4195072 -97678097 + AT_rich Low_complexity Low_complexity 1 24 0 235 242 150 105 chr13 4197378 4197485 -97675684 - MER5B DNA MER1_type -17 161 43 2504 54 0 0 chr13 4197485 4197781 -97675388 + AluY SINE Alu 1 296 -15 235 242 150 105 chr13 4197781 4197826 -97675343 - MER5B DNA MER1_type -135 43 2 504 232 87 53 chr13 4198774 4198981 -97674188 - MLT1K LTR MaLR -9 579 366 374 169 0 0 chr13 4200780 4200845 -97672324 + Alu SINE Alu 235 299 -3 503 248 24 8 chr13 4201504 4201629 -97671540 - Charlie4 DNA MER1_type -12 1949 1823 385 273 76 35 chr13 4201704 4201902 -97671267 - LTR33 LTR ERVL -1 520 315 23 33 0 0 chr13 4202604 4202634 -97670535 + AT_rich Low_complexity Low_complexity 1 30 0 883 207 35 101 chr13 4204717 4205084 -97668085 - LTR37A LTR ERV1 0 426 84 239 305 17 44 chr13 4205222 4205393 -97667776 - MIR SINE MIR -21 241 3 23 0 0 0 chr13 4205712 4205735 -97667434 + AT_rich Low_complexity Low_complexity 1 23 0 627 211 57 51 chr13 4206722 4206897 -97666272 - MER63A DNA MER1_type -33 177 2 229 257 0 43 chr13 4206904 4206974 -97666195 + L2 LINE L2 3247 3313 0 232 253 172 20 chr13 4207159 4207258 -97665911 - MIR SINE MIR -112 150 37 180 258 45 30 chr13 4209139 4209205 -97663964 - L2 LINE L2 -1046 2268 2202 2096 152 35 11 chr13 4209946 4210321 -97662848 - MLT1B LTR MaLR 0 390 7 663 315 104 41 chr13 4211029 4211492 -97661677 - MLT1J LTR MaLR 0 511 20 2399 176 94 4 chr13 4212461 4212973 -97660196 + MER74A LTR ERVL 1 558 0 233 264 110 22 chr13 4212973 4213064 -97660105 + L2 LINE L2 3212 3310 -3 2211 100 10 0 chr13 4213465 4213577 -97659592 + AluSg SINE Alu 13 122 -188 243 0 0 0 chr13 4213577 4213604 -97659565 + (CA)n Simple_repeat Simple_repeat 2 28 0 2211 100 10 0 chr13 4213604 4213781 -97659388 + AluSg SINE Alu 122 305 -5 350 286 43 31 chr13 4216088 4216249 -97656920 - L3 LINE CR1 -35 1542 1380 494 317 81 52 chr13 4216353 4216738 -97656431 - L3 LINE CR1 -262 1315 920 2092 125 10 0 chr13 4217008 4217303 -97655866 + AluSx SINE Alu 1 298 -14 2488 69 0 19 chr13 4219436 4219753 -97653416 + AluY SINE Alu 1 311 0 209 238 16 16 chr13 4219768 4219831 -97653338 + (TGAA)n Simple_repeat Simple_repeat 1 63 0 219 125 0 0 chr13 4220195 4220235 -97652934 + (TTAGGG)n Simple_repeat Simple_repeat 1 40 0 884 206 111 16 chr13 4220293 4220546 -97652623 - MER58B DNA MER1_type -9 332 56 2267 103 0 16 chr13 4220752 4221062 -97652107 - AluSg SINE Alu -5 305 1 2180 104 24 7 chr13 4221072 4221369 -97651800 - AluSg SINE Alu -8 302 1 311 350 51 10 chr13 4276366 4276563 -97596606 + L3 LINE CR1 685 889 -688 2144 116 0 3 chr13 4276585 4276894 -97596275 + AluSx SINE Alu 1 308 0 379 179 0 48 chr13 4277108 4277192 -97595977 - MIR SINE MIR -115 147 68 423 238 12 133 chr13 4277342 4277380 -97595789 + MIR SINE MIR 19 60 -202 2662 162 0 0 chr13 4277380 4277781 -97595388 + MER57A LTR ERV1 3 403 0 423 238 12 133 chr13 4277781 4277982 -97595187 + MIR SINE MIR 60 229 -33 432 284 112 0 chr13 4278471 4278587 -97594582 - L2 LINE L2 0 3272 3144 184 288 68 17 chr13 4279110 4279169 -97594000 + MER5B DNA MER1_type 80 141 -37 198 344 0 0 chr13 4281909 4281973 -97591196 + L2 LINE L2 3250 3313 0 338 264 181 28 chr13 4282428 4282572 -97590597 - MER5A DNA MER1_type 0 189 24 1677 171 33 26 chr13 4282636 4282941 -97590228 - AluJo SINE Alu -1 311 5 852 194 0 0 chr13 4285183 4285411 -97587758 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 1804 143 0 21 chr13 4286560 4286840 -97586329 + AluJb SINE Alu 9 282 -30 368 276 72 72 chr13 4287876 4288057 -97585112 - MIR SINE MIR -56 206 26 258 32 0 0 chr13 4289589 4289620 -97583549 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 396 59 0 0 chr13 4290359 4290410 -97582759 + (TG)n Simple_repeat Simple_repeat 1 51 0 203 309 229 29 chr13 4291417 4291592 -97581577 - MIR SINE MIR -7 255 46 224 293 0 0 chr13 4292234 4292292 -97580877 - L2 LINE L2 -97 3216 3159 390 234 0 0 chr13 4292351 4292505 -97580664 + (TG)n Simple_repeat Simple_repeat 1 154 0 819 196 68 0 chr13 4292644 4292807 -97580362 + MIR SINE MIR 67 240 -22 249 36 0 0 chr13 4293524 4293552 -97579617 - LTR1 LTR ERV1 0 785 758 490 248 16 31 chr13 4293599 4293728 -97579441 - HUERS-P2 LTR ERV1 -2961 127 1 3781 121 65 67 chr13 4293728 4294503 -97578666 - LTR1 LTR ERV1 0 785 13 601 205 6 99 chr13 4295252 4295423 -97577746 + MER63 DNA MER1_type 1 781 -281 666 103 45 13 chr13 4295596 4295752 -97577417 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 201 270 124 0 chr13 4295753 4295842 -97577327 + MIR3 SINE MIR 103 202 -6 501 275 84 0 chr13 4295922 4296100 -97577069 + L2 LINE L2 3112 3304 -9 389 349 23 0 chr13 4296116 4296245 -97576924 - MIR3 SINE MIR -62 146 15 223 317 108 36 chr13 4296617 4296784 -97576385 - L2 LINE L2 -24 3289 3111 549 192 144 0 chr13 4298551 4298676 -97574493 + LTR54B LTR ERV1 1 143 -355 1230 149 18 18 chr13 4298703 4298925 -97574244 + LTR54 LTR ERV1 289 510 0 464 129 26 17 chr13 4299635 4299751 -97573418 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 457 176 0 0 chr13 4299753 4299838 -97573331 + (TATG)n Simple_repeat Simple_repeat 2 86 0 267 271 14 0 chr13 4300277 4300347 -97572822 + L2 LINE L2 3240 3310 -3 736 261 14 21 chr13 4300446 4300778 -97572391 - MLT1A2 LTR MaLR 0 374 1 306 339 43 0 chr13 4301552 4301667 -97571502 - MER91C DNA MER1_type 0 140 21 708 316 95 17 chr13 4301887 4302359 -97570810 + LTR33 LTR ERVL 13 521 0 195 263 0 0 chr13 4302651 4302689 -97570480 + L2 LINE L2 3184 3221 -92 1346 146 175 5 chr13 4303238 4303646 -97569523 + MER44D DNA MER2_type 1 536 -69 1986 204 123 82 chr13 4303648 4304363 -97568806 + LTR1B LTR ERV1 2 745 -81 536 100 0 50 chr13 4304448 4304528 -97568641 + MER44D DNA MER2_type 530 605 0 623 268 127 53 chr13 4304675 4305220 -97567949 - L1MC4 LINE L1 -1 8041 7457 2368 85 7 0 chr13 4306003 4306310 -97566859 - AluY SINE Alu -2 309 1 403 234 82 68 chr13 4306365 4306794 -97566375 + MER52A LTR ERV1 1 572 -706 1771 135 4 29 chr13 4306958 4307239 -97565930 - AluSx SINE Alu -38 274 1 189 0 0 0 chr13 4308517 4308538 -97564631 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 94 17 chr13 4309115 4309295 -97563874 + MIR SINE MIR 4 197 -65 306 73 0 0 chr13 4309333 4309374 -97563795 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2010 94 72 0 chr13 4309377 4309642 -97563527 - AluSx SINE Alu -28 284 1 22 0 0 0 chr13 4309642 4309664 -97563505 + AT_rich Low_complexity Low_complexity 1 22 0 295 117 11 43 chr13 4309874 4309968 -97563201 + (TA)n Simple_repeat Simple_repeat 2 92 0 606 281 21 0 chr13 4311038 4311276 -97561893 - L1MDa LINE L1 -2967 3573 3331 * 10445 214 57 21 chr13 4311256 4314064 -97559105 - L1MDa LINE L1 -3616 2924 17 341 278 46 0 chr13 4314269 4314377 -97558792 - MIR SINE MIR -71 191 79 1252 264 71 23 chr13 4314602 4315041 -97558128 + LTR40c LTR ERVL 1 460 -5 291 28 0 0 chr13 4315393 4315429 -97557740 + (T)n Simple_repeat Simple_repeat 1 36 0 200 122 0 24 chr13 4316217 4316258 -97556911 + (TG)n Simple_repeat Simple_repeat 1 40 0 2331 90 0 13 chr13 4317326 4317636 -97555533 + AluY SINE Alu 1 306 -5 23 0 0 0 chr13 4318301 4318324 -97554845 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr13 4318704 4318727 -97554442 + (TA)n Simple_repeat Simple_repeat 1 23 0 191 245 0 41 chr13 4319333 4319382 -97553787 - L2 LINE L2 -16 3256 3210 292 250 0 0 chr13 4320547 4320607 -97552562 - L2 LINE L2 0 3313 3254 30 0 0 0 chr13 4320706 4320736 -97552433 + AT_rich Low_complexity Low_complexity 1 30 0 22 80 0 0 chr13 4320855 4320905 -97552264 + AT_rich Low_complexity Low_complexity 1 50 0 728 209 0 7 chr13 4321014 4321167 -97552002 - MLT1A1 LTR MaLR -213 152 1 584 296 21 34 chr13 4321326 4321559 -97551610 + MLT1J1 LTR MaLR 206 435 -11 1235 255 77 17 chr13 4321821 4322076 -97551093 - MLT1C LTR MaLR 0 467 178 378 0 0 0 chr13 4322076 4322118 -97551051 + (TG)n Simple_repeat Simple_repeat 2 43 0 1235 255 77 17 chr13 4322118 4322266 -97550903 - MLT1C LTR MaLR -289 178 40 238 203 0 17 chr13 4322878 4322937 -97550232 + MLT1J2 LTR MaLR 369 426 -24 289 285 115 33 chr13 4322969 4323081 -97550088 - L1ME LINE L1 -336 5785 5684 1786 104 4 4 chr13 4323081 4323321 -97549848 - AluSg/x SINE Alu 0 312 73 * 2346 74 0 17 chr13 4323319 4323618 -97549551 - AluY SINE Alu -17 294 1 289 285 115 33 chr13 4323618 4323776 -97549393 - L1ME LINE L1 -734 5387 5494 642 335 97 36 chr13 4323837 4324446 -97548723 + L2 LINE L2 1784 2429 -885 1134 260 142 21 chr13 4324511 4324977 -97548192 + MLT1E LTR MaLR 72 593 0 2139 118 3 22 chr13 4326472 4326786 -97546383 - AluSx SINE Alu -4 308 1 647 233 39 24 chr13 4326929 4327135 -97546034 + MER3 DNA MER1_type 1 209 0 181 229 0 0 chr13 4327242 4327277 -97545892 - L2 LINE L2 -20 3293 3259 390 74 0 0 chr13 4328831 4328885 -97544284 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 646 209 43 6 chr13 4330355 4330518 -97542651 + MER5A DNA MER1_type 3 171 -18 321 343 70 29 chr13 4330514 4330686 -97542483 + MIR SINE MIR 63 241 -21 * 297 258 258 0 chr13 4331266 4331355 -97541814 + MER5A DNA MER1_type 49 160 -29 207 291 70 57 chr13 4332225 4332383 -97540786 + MIR SINE MIR 93 252 -10 798 215 97 45 chr13 4334237 4334525 -97538644 + L1MDb LINE L1 43 345 -6064 304 327 60 33 chr13 4334788 4335207 -97537962 + L1M4 LINE L1 3786 4215 -1931 272 248 88 9 chr13 4335401 4335414 -97537755 - L1M4 LINE L1 -1302 4844 4833 2398 84 3 0 chr13 4335414 4335712 -97537457 - AluY SINE Alu -12 299 1 272 248 88 9 chr13 4335712 4335811 -97537358 - L1M4 LINE L1 -1313 4833 4723 23 33 0 0 chr13 4336181 4336211 -97536958 + AT_rich Low_complexity Low_complexity 1 30 0 535 183 148 0 chr13 4336696 4336811 -97536358 - FLAM_A SINE Alu -1 132 1 2314 202 127 33 chr13 4336960 4337803 -97535366 - MER69 DNA AcHobo -49 2477 1556 462 307 76 71 chr13 4337804 4338119 -97535050 + L2 LINE L2 2687 3010 -303 1372 191 25 86 chr13 4338119 4338443 -97534726 - AluJo SINE Alu -8 304 1 462 307 76 71 chr13 4338443 4338707 -97534462 + L2 LINE L2 3010 3271 -42 278 293 35 9 chr13 4338802 4338918 -97534251 - MER103 DNA DNA -45 121 3 549 350 120 19 chr13 4339098 4339524 -97533645 - L2 LINE L2 0 3272 2804 23 33 0 0 chr13 4340653 4340683 -97532486 + AT_rich Low_complexity Low_complexity 1 30 0 476 150 20 30 chr13 4340692 4340792 -97532377 - L1MA5 LINE L1 -2 6298 6200 231 356 58 19 chr13 4341641 4341668 -97531501 + L2 LINE L2 3154 3178 -94 2390 126 22 0 chr13 4341668 4342024 -97531145 - THE1B LTR MaLR 0 364 1 231 356 58 19 chr13 4342024 4342100 -97531069 + L2 LINE L2 3178 3261 -11 942 280 59 42 chr13 4342119 4342590 -97530579 - LTR16C LTR ERVL -9 482 4 3567 243 29 28 chr13 4342696 4343818 -97529351 - L1M4 LINE L1 -1209 4937 3814 3453 189 18 49 chr13 4343818 4344509 -97528660 + L1MB5 LINE L1 5160 5821 -353 2404 78 0 13 chr13 4344509 4344818 -97528351 + AluY SINE Alu 1 305 -6 3453 189 18 49 chr13 4344818 4345114 -97528055 + L1MB5 LINE L1 5821 6125 -49 309 260 75 12 chr13 4346537 4346710 -97526459 - L1ME4a LINE L1 -98 6023 5840 21 0 0 0 chr13 4346753 4346774 -97526395 + AT_rich Low_complexity Low_complexity 1 21 0 237 240 13 0 chr13 4346954 4347029 -97526140 - L1M4 LINE L1 -3959 2187 2112 1240 153 0 0 chr13 4347164 4347367 -97525802 - L1PA13 LINE L1 -3 6160 5958 2358 169 46 26 chr13 4347636 4348134 -97525035 - L1MC1 LINE L1 -6 6327 5820 1811 152 34 9 chr13 4348142 4348465 -97524704 - L1MC1 LINE L1 -562 5771 5441 948 202 23 43 chr13 4348467 4348724 -97524445 + MSTD LTR MaLR 145 396 0 290 289 13 13 chr13 4349525 4349601 -97523568 - MIR SINE MIR -159 103 28 2440 69 0 28 chr13 4351562 4351879 -97521290 - AluY SINE Alu -3 308 1 298 243 56 56 chr13 4353442 4353549 -97519620 - L2 LINE L2 0 3313 3207 843 202 10 30 chr13 4353687 4353890 -97519279 - MER3 DNA MER1_type -9 200 2 638 280 69 13 chr13 4354228 4354460 -97518709 - L2 LINE L2 -1 3312 3068 1412 259 120 30 chr13 4354460 4355008 -97518161 - L1MEc LINE L1 -3706 2509 2012 1801 103 118 8 chr13 4355008 4355270 -97517899 - AluSg1 SINE Alu -18 291 1 1412 259 120 30 chr13 4355270 4355822 -97517347 - L1MEc LINE L1 -4203 2012 1511 2583 123 5 0 chr13 4355822 4356195 -97516974 - THE1C LTR MaLR 0 375 1 10221 115 45 3 chr13 4356195 4357711 -97515458 - THE1C-int LTR MaLR 0 1580 1 2631 106 3 13 chr13 4357712 4358090 -97515079 - THE1C LTR MaLR -1 374 1 1412 259 120 30 chr13 4358090 4358153 -97515016 - L1MEc LINE L1 -4703 1512 1283 1552 188 14 17 chr13 4358153 4358445 -97514724 + AluJb SINE Alu 1 291 -21 574 304 80 30 chr13 4358588 4358953 -97514216 - L2 LINE L2 -824 2490 2108 2093 249 37 22 chr13 4359118 4359195 -97513974 - L1M4 LINE L1 -1816 4828 4754 192 77 0 0 chr13 4359195 4359221 -97513948 + (TG)n Simple_repeat Simple_repeat 2 27 0 2093 249 37 22 chr13 4359221 4359897 -97513272 - L1M4 LINE L1 -1890 4754 4064 1144 204 84 62 chr13 4359897 4360300 -97512869 - MLT1C LTR MaLR 0 467 56 519 273 32 16 chr13 4360343 4360592 -97512577 - L1M4 LINE L1 -2575 4069 3817 * 6242 70 6 30 chr13 4360562 4361474 -97511695 - L1PA7 LINE L1 -3 6649 5760 648 239 44 0 chr13 4361468 4361648 -97511521 - L1M4 LINE L1 -6353 189 2 * 283 370 0 16 chr13 4362215 4362342 -97510827 - MIR3 SINE MIR -6 202 78 290 230 103 23 chr13 4362665 4362752 -97510417 - L2 LINE L2 -10 3262 3169 188 214 71 0 chr13 4363240 4363282 -97509887 - L2 LINE L2 -2 3311 3267 1255 202 77 36 chr13 4364730 4365121 -97508048 + MLT1C LTR MaLR 60 466 -1 477 260 3 39 chr13 4366067 4366397 -97506772 + CT-rich Low_complexity Low_complexity 1 318 0 7027 54 22 0 chr13 4366513 4367443 -97505726 - L1PA7 LINE L1 -4 6150 5215 11575 127 7 36 chr13 4367443 4370516 -97502653 - L1P3 LINE L1 -3393 3068 12 21 36 0 0 chr13 4370517 4370545 -97502624 + AT_rich Low_complexity Low_complexity 1 28 0 515 100 11 11 chr13 4372391 4372481 -97500688 - L1MB8 LINE L1 0 6178 6089 3356 175 45 7 chr13 4372496 4373205 -97499964 - L1MB4 LINE L1 -6 6174 5439 217 237 129 21 chr13 4373421 4373514 -97499655 + MIR SINE MIR 150 252 -10 2368 72 7 3 chr13 4375399 4375691 -97497478 + AluSq SINE Alu 1 293 -20 1216 126 37 0 chr13 4375744 4375934 -97497235 + MER30 DNA MER1_type 1 197 -33 914 231 114 70 chr13 4378031 4378460 -97494709 + LTR37B LTR ERV1 21 468 0 38 39 0 0 chr13 4378761 4378813 -97494356 + AT_rich Low_complexity Low_complexity 1 52 0 238 329 14 0 chr13 4378960 4379033 -97494136 - L2 LINE L2 -206 3066 2993 320 161 81 0 chr13 4380221 4380235 -97492934 - MER46A DNA MER2_type -73 163 145 13965 142 19 107 chr13 4380235 4382570 -97490599 + Tigger4(Zombi) DNA MER2_type 1 2016 -715 2538 20 20 0 chr13 4382570 4382871 -97490298 + L1PA2 LINE L1 5846 6155 0 13965 142 19 107 chr13 4382871 4383529 -97489640 + Tigger4(Zombi) DNA MER2_type 2016 2730 -1 755 163 7 7 chr13 4383687 4383822 -97489347 + Tigger4(Zombi) DNA MER2_type 1803 1937 -794 333 321 52 33 chr13 4383858 4384070 -97489099 + L1MEc LINE L1 1304 1519 -4877 335 219 30 116 chr13 4384367 4384531 -97488638 + L1MEc LINE L1 2217 2366 -3849 405 204 176 19 chr13 4384569 4384677 -97488492 - L2 LINE L2 -2 3311 3187 403 319 95 51 chr13 4384850 4385239 -97487930 - LTR33 LTR ERVL -11 510 105 316 285 68 82 chr13 4385311 4385592 -97487577 + L1MEc LINE L1 3062 3338 -2877 692 347 34 9 chr13 4385862 4386185 -97486984 + MLT1J LTR MaLR 71 401 -110 1867 121 0 4 chr13 4386699 4386955 -97486214 + AluSx SINE Alu 35 289 -23 499 313 72 24 chr13 4387107 4387442 -97485727 + L1MEc LINE L1 118 468 -5928 * 1725 268 44 40 chr13 4387427 4388425 -97484744 + L1MEc LINE L1 2545 3546 -2669 862 237 68 22 chr13 4388430 4388708 -97484461 - L1MB8 LINE L1 0 6178 5888 2653 201 22 30 chr13 4388711 4389627 -97483542 - L1MB8 LINE L1 -428 5756 4854 2018 107 0 58 chr13 4389627 4389937 -97483232 + AluSx SINE Alu 1 292 -20 2653 201 22 30 chr13 4389937 4390130 -97483039 - L1MB8 LINE L1 -1330 4854 4661 4353 195 70 6 chr13 4390130 4390972 -97482197 - MER54A LTR ERVL -5 896 1 336 152 45 125 chr13 4390978 4391090 -97482079 - L1MB8 LINE L1 -1482 4664 4562 2053 149 97 20 chr13 4391092 4391482 -97481687 + MSTA LTR MaLR 9 428 0 8225 159 33 57 chr13 4391487 4391951 -97481218 + MSTA-int LTR MaLR 6 480 -1100 2789 22 0 0 chr13 4391951 4392262 -97480907 + AluYa5 SINE Alu 1 311 0 8225 159 33 57 chr13 4392262 4393411 -97479758 + MSTA-int LTR MaLR 480 1580 0 2169 134 84 22 chr13 4393411 4393814 -97479355 + MSTA LTR MaLR 1 428 0 1815 237 18 27 chr13 4393814 4394363 -97478806 - L1MB8 LINE L1 -1582 4564 4021 213 39 0 0 chr13 4394368 4394394 -97478775 + (TG)n Simple_repeat Simple_repeat 2 27 0 10300 159 9 3 chr13 4394429 4396426 -97476743 + L1P4 LINE L1 3511 5515 -653 883 214 0 6 chr13 4396437 4396610 -97476559 - AluJb SINE Alu -25 287 116 1497 196 58 58 chr13 4396610 4397038 -97476131 + L1ME1 LINE L1 5510 6079 -255 2799 19 0 0 chr13 4397038 4397348 -97475821 + AluYa5 SINE Alu 1 310 -1 1497 196 58 58 chr13 4397348 4397595 -97475574 + L1ME1 LINE L1 6079 6325 -9 1356 229 38 24 chr13 4397599 4397939 -97475230 + MLT1A1 LTR MaLR 3 347 -18 522 271 21 0 chr13 4398013 4398201 -97474968 + L1ME1 LINE L1 2189 2380 -3766 1037 184 68 138 chr13 4398201 4398598 -97474571 - LOR1a LTR ERV1 -13 484 116 2035 284 65 12 chr13 4398629 4399684 -97473485 + L1ME1 LINE L1 2375 3485 -2661 43168 48 5 0 chr13 4399699 4405824 -97467345 + L1PA4 LINE L1 4 6155 0 3279 260 115 24 chr13 4405839 4406097 -97467072 + L1ME1 LINE L1 3497 3730 -2436 2200 79 4 0 chr13 4406097 4406375 -97466794 + AluY SINE Alu 19 297 -14 3279 260 115 24 chr13 4406375 4408548 -97464621 + L1ME1 LINE L1 3730 6131 -35 2154 75 11 4 chr13 4409017 4409327 -97463842 + AluY SINE Alu 1 312 0 23 0 0 0 chr13 4410187 4410210 -97462959 + AT_rich Low_complexity Low_complexity 1 23 0 1441 149 52 45 chr13 4410338 4410647 -97462522 - L1MA9 LINE L1 -5 6307 5997 28 0 0 0 chr13 4411151 4411179 -97461990 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr13 4411836 4411864 -97461305 + AT_rich Low_complexity Low_complexity 1 28 0 2411 65 3 0 chr13 4411864 4412156 -97461013 + AluSp SINE Alu 1 293 -20 8184 169 24 51 chr13 4412159 4414699 -97458470 - L1MA4 LINE L1 -8 6292 3827 5936 23 0 0 chr13 4414699 4415386 -97457783 - L1PA2 LINE L1 -2 6153 5467 8184 169 24 51 chr13 4415386 4415659 -97457510 - L1MA4 LINE L1 -2473 3827 3548 10241 181 16 2 chr13 4415669 4418388 -97454781 + L1PA13 LINE L1 3428 6163 0 5365 166 45 16 chr13 4418388 4418897 -97454272 + L1MA5 LINE L1 4325 4818 -1482 1119 169 29 14 chr13 4418897 4419104 -97454065 - MER6B DNA MER2_type 0 210 1 5365 166 45 16 chr13 4419104 4420513 -97452656 + L1MA5 LINE L1 4818 6299 -1 25 31 0 0 chr13 4420668 4420700 -97452469 + AT_rich Low_complexity Low_complexity 1 32 0 228 35 0 0 chr13 4421507 4421536 -97451633 + (TG)n Simple_repeat Simple_repeat 2 30 0 231 88 0 0 chr13 4422401 4422435 -97450734 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 4146 129 9 5 chr13 4422624 4423274 -97449895 - MER39B LTR ERV1 0 653 1 1015 211 106 116 chr13 4423348 4423944 -97449225 + LTR49 LTR ERV1 5 594 -1 2044 161 36 28 chr13 4424825 4425185 -97447984 - THE1B LTR MaLR -1 363 1 11175 107 14 0 chr13 4425185 4426744 -97446425 - THE1B-int LTR MaLR 0 1580 1 2177 138 33 25 chr13 4426744 4427105 -97446064 - THE1B LTR MaLR 0 364 1 32 0 0 0 chr13 4427170 4427202 -97445967 + AT_rich Low_complexity Low_complexity 1 32 0 733 204 41 0 chr13 4427675 4427822 -97445347 + MLT1J2 LTR MaLR 16 168 -282 492 251 32 70 chr13 4427861 4428048 -97445121 + MLT1J2 LTR MaLR 245 424 -26 24 53 0 0 chr13 4429414 4429452 -97443717 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr13 4430094 4430115 -97443054 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr13 4430479 4430525 -97442644 + (TG)n Simple_repeat Simple_repeat 2 47 0 309 290 74 79 chr13 4431582 4431961 -97441208 + L1MDa LINE L1 1039 1415 -5125 1608 299 176 18 chr13 4431973 4432745 -97440424 + L1M4b LINE L1 374 1267 -5592 1544 190 83 21 chr13 4432753 4433126 -97440043 + MSTD LTR MaLR 1 396 0 312 27 0 0 chr13 4433362 4433399 -97439770 + (TTA)n Simple_repeat Simple_repeat 3 39 0 14588 32 1 1 chr13 4433399 4435896 -97437273 - L1PA4 LINE L1 -18 6137 3636 2274 77 7 0 chr13 4437935 4438222 -97434947 + AluSp SINE Alu 14 302 -11 2650 42 0 0 chr13 4438540 4438846 -97434323 - AluY SINE Alu -5 306 1 232 259 19 0 chr13 4438889 4438997 -97434172 + (TA)n Simple_repeat Simple_repeat 1 110 0 262 336 118 50 chr13 4439229 4439586 -97433583 - L2 LINE L2 -12 3301 2921 582 254 57 89 chr13 4440327 4440820 -97432349 + MLT1H LTR MaLR 39 595 0 425 131 12 0 chr13 4441485 4441569 -97431600 + CT-rich Low_complexity Low_complexity 2 86 0 584 347 98 23 chr13 4441609 4442047 -97431122 + L3 LINE CR1 916 1386 -191 21 0 0 0 chr13 4442685 4442706 -97430463 + AT_rich Low_complexity Low_complexity 1 21 0 585 287 35 17 chr13 4444705 4444879 -97428290 + MIR SINE MIR 36 212 -50 491 266 167 27 chr13 4445452 4445674 -97427495 + MIR SINE MIR 10 262 0 258 268 0 0 chr13 4445883 4445995 -97427174 + (TA)n Simple_repeat Simple_repeat 2 113 0 241 318 0 0 chr13 4446805 4446868 -97426301 - L3b LINE CR1 -139 1444 1382 2351 92 6 13 chr13 4447293 4447608 -97425561 + AluSp SINE Alu 1 313 0 709 279 107 38 chr13 4447704 4448356 -97424813 + L1ME4a LINE L1 5278 5974 -147 280 290 6 0 chr13 4449044 4449129 -97424040 - MIR3 SINE MIR -22 186 100 189 255 0 39 chr13 4449214 4449265 -97423904 - L3 LINE CR1 -603 974 926 601 347 73 29 chr13 4450258 4450736 -97422433 + L2 LINE L2 2808 3306 -7 1337 189 184 19 chr13 4451531 4451954 -97421215 + LTR54B LTR ERV1 2 494 -4 23 54 0 0 chr13 4452074 4452111 -97421058 + AT_rich Low_complexity Low_complexity 1 37 0 306 330 78 35 chr13 4452587 4452869 -97420300 - L1ME LINE L1 -502 6117 5824 244 258 48 0 chr13 4453067 4453129 -97420040 - MIR SINE MIR -67 141 77 222 200 0 0 chr13 4454353 4454393 -97418776 + CT-rich Low_complexity Low_complexity 2 41 0 587 226 43 24 chr13 4454548 4454712 -97418457 - MER96B DNA MER1_type? -238 179 13 2622 36 0 0 chr13 4455752 4456053 -97417116 - AluY SINE Alu -10 301 1 240 216 284 11 chr13 4457968 4458056 -97415113 + L2 LINE L2 3199 3310 -3 23 0 0 0 chr13 4458075 4458098 -97415071 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 78 35 chr13 4460405 4460521 -97412648 - MIR SINE MIR -70 138 18 290 136 0 0 chr13 4462319 4462363 -97410806 + L1PBa LINE L1 2443 2486 -4377 705 146 88 0 chr13 4462363 4462500 -97410669 + L1PBa LINE L1 2444 2592 -4271 1221 213 28 19 chr13 4462566 4462927 -97410242 + L1PB3 LINE L1 5040 5403 -743 3471 142 30 5 chr13 4462936 4463526 -97409643 + L1PB3 LINE L1 5543 6147 -7 37 102 0 0 chr13 4463822 4463950 -97409219 + AT_rich Low_complexity Low_complexity 1 128 0 764 365 90 9 chr13 4464141 4464687 -97408482 + L2 LINE L2 1763 2352 -962 437 240 48 32 chr13 4464894 4465019 -97408150 - L2 LINE L2 0 3313 3187 504 238 0 10 chr13 4465091 4465192 -97407977 - AluJb SINE Alu -17 295 196 635 240 0 7 chr13 4465211 4465361 -97407808 - L1ME LINE L1 -1160 5484 5336 3689 236 86 42 chr13 4465370 4467088 -97406081 - L1ME LINE L1 -3850 2794 1001 815 263 48 12 chr13 4467304 4467555 -97405614 - L1ME LINE L1 -6281 261 2 1664 219 51 22 chr13 4467564 4468071 -97405098 - L1M4 LINE L1 -1314 4832 4311 403 325 70 37 chr13 4468078 4468349 -97404820 + L2 LINE L2 2698 2977 -337 2624 226 42 8 chr13 4468362 4468954 -97404215 + L1MC1 LINE L1 4 615 -5811 290 275 14 0 chr13 4468957 4469026 -97404143 + L1MC1 LINE L1 573 642 -5784 6519 238 49 7 chr13 4469027 4471134 -97402035 + L1MC1 LINE L1 3147 5342 -1084 6179 133 39 18 chr13 4471146 4472219 -97400950 + L1MC1 LINE L1 5518 6612 -1 30 45 0 0 chr13 4472434 4472478 -97400691 + AT_rich Low_complexity Low_complexity 1 44 0 331 138 0 94 chr13 4472479 4472660 -97400509 + (TAA)n Simple_repeat Simple_repeat 3 166 0 323 278 11 0 chr13 4472660 4472750 -97400419 - L1MC4 LINE L1 -1338 6704 6614 271 271 0 0 chr13 4472751 4472836 -97400333 + (TA)n Simple_repeat Simple_repeat 1 85 0 260 347 68 16 chr13 4472984 4473174 -97399995 - MIR SINE MIR -61 201 2 391 370 74 31 chr13 4473285 4473799 -97399370 - L2 LINE L2 -2606 708 173 2105 118 7 0 chr13 4474039 4474326 -97398843 + AluSx SINE Alu 1 289 -23 245 377 85 41 chr13 4476621 4477176 -97395993 + L2 LINE L2 212 790 -2524 798 276 5 5 chr13 4477816 4478001 -97395168 - MIR SINE MIR -20 242 58 865 249 13 27 chr13 4478365 4478590 -97394579 + MIR SINE MIR 41 262 0 206 279 0 0 chr13 4478617 4478660 -97394509 + L3 LINE CR1 731 773 -804 209 343 168 22 chr13 4481151 4481288 -97391881 - L2 LINE L2 -605 2709 2553 6171 87 14 2 chr13 4482888 4483732 -97389437 - L1PA10 LINE L1 -11 6157 5304 186 259 190 9 chr13 4483927 4484043 -97389126 - L2 LINE L2 -100 3213 3077 21 36 0 0 chr13 4484939 4484967 -97388202 + AT_rich Low_complexity Low_complexity 1 28 0 215 245 0 0 chr13 4485504 4485557 -97387612 + T-rich Low_complexity Low_complexity 1 53 0 927 150 40 111 chr13 4485601 4485827 -97387342 - MLT1B LTR MaLR 0 390 181 392 182 0 26 chr13 4485831 4485908 -97387261 - MLT1B LTR MaLR -315 75 1 1199 204 65 46 chr13 4486313 4486709 -97386460 + MER57A LTR ERV1 19 403 0 26 0 0 0 chr13 4486722 4486748 -97386421 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr13 4486783 4486832 -97386337 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr13 4487658 4487680 -97385489 + AT_rich Low_complexity Low_complexity 1 22 0 248 188 31 47 chr13 4488595 4488659 -97384510 + L1MEc LINE L1 1924 1986 -4410 301 278 87 87 chr13 4488768 4489020 -97384149 + L1MEc LINE L1 2120 2371 -4025 709 271 92 0 chr13 4489263 4489492 -97383677 + MER46C DNA MER2_type 10 259 -79 618 78 29 0 chr13 4489610 4489712 -97383457 + (GA)n Simple_repeat Simple_repeat 2 106 0 230 285 89 16 chr13 4489846 4489969 -97383200 + L1MEc LINE L1 2713 2844 -3371 829 20 20 0 chr13 4489974 4490075 -97383094 + L1PA4 LINE L1 6052 6154 -1 2341 52 3 14 chr13 4490501 4490790 -97382379 - AluY SINE Alu -11 300 15 212 119 0 24 chr13 4491582 4491624 -97381545 + (GA)n Simple_repeat Simple_repeat 2 42 0 302 237 185 52 chr13 4492029 4492164 -97381005 + MIR SINE MIR 36 188 -74 2394 82 0 3 chr13 4492214 4492518 -97380651 - AluSp SINE Alu -10 303 1 22 0 0 0 chr13 4492619 4492641 -97380528 + AT_rich Low_complexity Low_complexity 1 22 0 773 144 44 62 chr13 4492641 4492801 -97380368 - MER4D LTR ERV1 -25 878 722 * 1332 87 61 6 chr13 4492776 4493018 -97380151 - MER4D LTR ERV1 -311 592 296 274 303 13 0 chr13 4493194 4493270 -97379899 - MLT1I LTR MaLR -248 161 85 219 269 155 87 chr13 4493645 4493682 -97379487 + MIR SINE MIR 29 62 -200 1732 146 62 4 chr13 4493682 4493957 -97379212 - AluJb SINE Alu -20 292 2 219 269 155 87 chr13 4493957 4494138 -97379031 + MIR SINE MIR 62 262 0 271 241 51 0 chr13 4494358 4494437 -97378732 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 1446 263 78 36 chr13 4495186 4495818 -97377351 - L1ME3A LINE L1 -55 6509 5852 * 2916 273 108 51 chr13 4495810 4496975 -97376194 - L1MDa LINE L1 -1423 5117 4020 2377 132 26 33 chr13 4496975 4497039 -97376130 - L1MA9 LINE L1 0 6312 6249 2444 60 0 25 chr13 4497039 4497358 -97375811 - AluY SINE Alu 0 311 1 2377 132 26 33 chr13 4497358 4497748 -97375421 - L1MA9 LINE L1 -63 6249 5861 2916 273 108 51 chr13 4497748 4498122 -97375047 - L1MDa LINE L1 -2520 4020 3669 2293 97 0 0 chr13 4498122 4498420 -97374749 - AluSx SINE Alu -14 298 1 2916 273 108 51 chr13 4498420 4500477 -97372692 - L1MDa LINE L1 -2871 3669 1297 547 122 0 0 chr13 4501092 4501174 -97371995 + L1MC1 LINE L1 6247 6328 -5 1377 53 72 91 chr13 4502014 4502223 -97370946 + AluSg SINE Alu 1 205 -105 1856 80 0 28 chr13 4502224 4502494 -97370675 + AluY SINE Alu 42 304 0 3137 183 51 37 chr13 4502572 4503321 -97369848 + L1MC3 LINE L1 6935 7693 -92 236 203 17 0 chr13 4503462 4503521 -97369648 - L1MC3 LINE L1 -151 7634 7575 292 181 24 48 chr13 4503522 4503605 -97369564 + L1MC3 LINE L1 7705 7785 0 21 0 0 0 chr13 4503764 4503785 -97369384 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr13 4504122 4504150 -97369019 + AT_rich Low_complexity Low_complexity 1 28 0 212 343 0 14 chr13 4506268 4506341 -97366828 - L2 LINE L2 0 3313 3242 4730 206 27 39 chr13 4506758 4507916 -97365253 + L1MC3 LINE L1 6641 7784 -1 342 0 0 0 chr13 4509626 4509664 -97363505 + (TG)n Simple_repeat Simple_repeat 2 39 0 3429 188 160 12 chr13 4510591 4511368 -97361801 - THE1C-int LTR MaLR -757 894 3 1678 140 50 20 chr13 4511370 4511670 -97361499 - THE1C LTR MaLR 0 375 67 687 172 9 0 chr13 4512198 4512314 -97360855 + MLT1A1 LTR MaLR 249 365 0 224 320 8 57 chr13 4514189 4514311 -97358858 + L2 LINE L2 3155 3270 -43 23 0 0 0 chr13 4514319 4514342 -97358827 + AT_rich Low_complexity Low_complexity 1 23 0 738 171 0 0 chr13 4514345 4514474 -97358695 - L1MA5 LINE L1 -3 6297 6169 248 333 0 0 chr13 4514635 4514707 -97358462 + (TCCA)n Simple_repeat Simple_repeat 2 73 0 276 100 0 0 chr13 4515641 4515681 -97357488 + (TG)n Simple_repeat Simple_repeat 1 40 0 430 274 51 57 chr13 4515699 4515874 -97357295 + L3 LINE CR1 923 1096 -481 284 384 18 0 chr13 4515880 4515992 -97357177 + L3 LINE CR1 1461 1574 -3 296 334 26 0 chr13 4516029 4516143 -97357026 - MIR SINE MIR -64 144 19 187 346 141 5 chr13 4516143 4516328 -97356841 + L3 LINE CR1 1098 1307 -270 236 275 119 0 chr13 4516475 4516584 -97356585 + MLT1J LTR MaLR 32 153 -358 346 277 42 50 chr13 4516902 4517162 -97356007 + HAL1 LINE L1 2246 2503 -4 1908 94 12 101 chr13 4518571 4518899 -97354270 - AluSq SINE Alu -14 299 1 25 0 0 0 chr13 4518901 4518926 -97354243 + AT_rich Low_complexity Low_complexity 1 25 0 231 292 45 0 chr13 4720187 4720276 -97152893 + MER112 DNA MER1_type 19 111 -149 291 140 0 0 chr13 4720285 4720335 -97152834 + (T)n Simple_repeat Simple_repeat 1 50 0 1652 94 8 0 chr13 4720999 4721233 -97151936 - L1PA11 LINE L1 0 6174 5939 530 213 7 7 chr13 4721370 4721506 -97151663 + MER3 DNA MER1_type 34 122 -87 1216 206 90 27 chr13 4721514 4721764 -97151405 + MER3 DNA MER1_type 2234 2516 -108 2265 120 0 18 chr13 4721764 4722105 -97151064 - MER1B DNA MER1_type 0 337 3 1216 206 90 27 chr13 4722105 4722222 -97150947 + MER3 DNA MER1_type 2516 2624 0 394 281 61 0 chr13 4722358 4722501 -97150668 - MIR SINE MIR -67 141 8 296 269 21 21 chr13 4722779 4722872 -97150297 - MIR SINE MIR 0 262 170 202 214 60 60 chr13 4722963 4723047 -97150122 - MIR SINE MIR -102 106 23 544 232 8 24 chr13 4723924 4724049 -97149120 + MIR SINE MIR 32 154 -108 181 352 45 50 chr13 4724295 4724474 -97148695 + L2 LINE L2 2576 2753 -561 4468 236 34 38 chr13 4724591 4725370 -97147799 + L1MC1 LINE L1 3193 3965 -2181 1222 222 12 102 chr13 4725370 4725771 -97147398 + MLT1A1 LTR MaLR 1 365 0 4468 236 34 38 chr13 4725771 4726403 -97146766 + L1MC1 LINE L1 3965 4598 -1548 1514 78 4 91 chr13 4726503 4726745 -97146424 - MLT2A2 LTR ERVL -232 221 1 2111 207 56 14 chr13 4726750 4727195 -97145974 - MER88 LTR ERVL 0 464 1 5341 181 43 38 chr13 4727195 4728389 -97144780 + L1MC1 LINE L1 4651 5840 -493 2009 95 57 3 chr13 4728389 4728672 -97144497 + AluSq SINE Alu 1 298 -15 5341 181 43 38 chr13 4728672 4729168 -97144001 + L1MC1 LINE L1 5840 6332 -1 366 309 98 66 chr13 4729200 4729669 -97143500 + L1ME4a LINE L1 2506 2989 -3157 25 0 0 0 chr13 4729682 4729707 -97143462 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr13 4730069 4730098 -97143071 + AT_rich Low_complexity Low_complexity 1 29 0 327 303 20 7 chr13 4730323 4730509 -97142660 + L1ME4a LINE L1 5282 5468 -723 302 308 121 57 chr13 4730526 4730965 -97142204 + L1ME4a LINE L1 5491 5957 -164 23 0 0 0 chr13 4730988 4731011 -97142158 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr13 4731115 4731142 -97142027 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr13 4731284 4731314 -97141855 + AT_rich Low_complexity Low_complexity 1 30 0 591 280 0 36 chr13 4731353 4731521 -97141648 - MIR SINE MIR 0 262 101 2324 61 3 26 chr13 4731618 4731931 -97141238 + AluY SINE Alu 1 306 -5 2020 40 24 12 chr13 4731931 4732180 -97140989 + AluY SINE Alu 50 302 -9 2559 51 3 3 chr13 4732190 4732501 -97140668 + AluY SINE Alu 1 311 0 2487 213 114 20 chr13 4733065 4733826 -97139343 - L1ME2 LINE L1 -15 6149 5317 739 234 43 59 chr13 4733808 4734180 -97138989 - L1ME2 LINE L1 -1698 4448 4083 * 288 238 60 12 chr13 4734213 4734297 -97138872 - MLT1C LTR MaLR -379 88 1 633 173 30 23 chr13 4734297 4734430 -97138739 - MLT1C-int LTR MaLR 0 1371 1238 245 172 35 52 chr13 4734438 4734496 -97138673 - MLT1C-int LTR MaLR -110 1625 1569 3320 255 67 36 chr13 4734654 4735798 -97137371 - MLT1C-int LTR MaLR -152 1219 40 435 202 0 0 chr13 4736328 4736422 -97136747 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 2118 43 0 0 chr13 4738784 4739038 -97134131 - L1PA3 LINE L1 -3 6152 5899 5590 159 22 5 chr13 4739450 4740518 -97132651 - L1 LINE L1 -1277 4869 3783 3773 169 29 69 chr13 4740507 4741159 -97132010 + L1MA7 LINE L1 5455 6132 -159 * 1510 74 5 0 chr13 4741159 4741349 -97131820 - AluY SINE Alu -9 302 112 283 71 0 24 chr13 4741349 4741385 -97131784 - AluY SINE Alu -268 35 1 3773 169 29 69 chr13 4741385 4741568 -97131601 + L1MA7 LINE L1 6130 6291 0 1899 134 28 3 chr13 4742977 4743261 -97129908 - AluSx SINE Alu -21 291 1 332 385 65 7 chr13 4743346 4743621 -97129548 - Tigger8 DNA MER2_type -22 644 354 297 231 56 37 chr13 4743983 4744091 -97129078 - MIR3 SINE MIR 0 208 99 233 204 0 0 chr13 4744220 4744269 -97128900 - L1MB4 LINE L1 -6 6174 6126 2202 58 10 48 chr13 4745146 4745457 -97127712 + AluY SINE Alu 1 299 -12 969 243 18 74 chr13 4746000 4746311 -97126858 - L1M4 LINE L1 -1232 5332 5005 2488 56 0 3 chr13 4746311 4746613 -97126556 - AluY SINE Alu -10 301 1 969 243 18 74 chr13 4746613 4746921 -97126248 - L1M4 LINE L1 -1559 5005 4644 2734 239 51 40 chr13 4746937 4747077 -97126092 - L1MCb LINE L1 -2998 3566 3429 574 128 77 0 chr13 4747077 4747194 -97125975 - L1MA9 LINE L1 -10 6302 6177 2734 239 51 40 chr13 4747194 4748154 -97125015 - L1MCb LINE L1 -3135 3429 2456 2200 116 0 3 chr13 4748154 4748457 -97124712 - AluSq SINE Alu -11 302 1 2734 239 51 40 chr13 4748457 4748712 -97124457 - L1MCb LINE L1 -4108 2456 2205 3669 243 67 24 chr13 4748745 4750589 -97122580 - L1MCb LINE L1 -4440 2124 3 850 210 19 39 chr13 4750960 4751217 -97121952 - MER96B DNA MER1_type? -2 415 164 216 274 0 0 chr13 4751525 4751576 -97121593 + (CATA)n Simple_repeat Simple_repeat 1 51 0 471 63 0 0 chr13 4751772 4751835 -97121334 + (TA)n Simple_repeat Simple_repeat 2 64 0 376 218 40 10 chr13 4751835 4751927 -97121242 - L1MA9 LINE L1 -90 6222 6125 24 53 0 0 chr13 4752066 4752104 -97121065 + AT_rich Low_complexity Low_complexity 1 38 0 327 149 0 0 chr13 4752526 4752600 -97120569 + (TA)n Simple_repeat Simple_repeat 2 75 0 812 273 23 23 chr13 4754065 4754373 -97118796 + HAL1 LINE L1 2063 2370 -137 2275 95 33 10 chr13 4754418 4754723 -97118446 - AluSx SINE Alu 0 312 1 492 268 258 5 chr13 4755063 4755272 -97117897 + MIR SINE MIR 1 262 0 318 341 34 52 chr13 4755401 4755668 -97117501 + L2 LINE L2 3033 3294 -19 1348 202 125 38 chr13 4755821 4756264 -97116905 + MER66A LTR ERV1 100 478 0 208 338 25 0 chr13 4756889 4756969 -97116200 - MIR SINE MIR -100 162 81 27482 94 9 12 chr13 4757413 4762388 -97110781 - L1PA7 LINE L1 -2 6152 1196 27 0 0 0 chr13 4763290 4763317 -97109852 + AT_rich Low_complexity Low_complexity 1 27 0 276 124 52 10 chr13 4763329 4763426 -97109743 + (TA)n Simple_repeat Simple_repeat 2 102 0 280 299 17 8 chr13 4763449 4763566 -97109603 + (TA)n Simple_repeat Simple_repeat 2 119 0 291 267 92 17 chr13 4764808 4764928 -97108241 + MIR SINE MIR 48 176 -86 361 305 0 30 chr13 4765412 4765543 -97107626 + MIR SINE MIR 57 183 -79 328 290 28 9 chr13 4765627 4765734 -97107435 - MIR SINE MIR -46 216 108 22 21 0 62 chr13 4767187 4767208 -97105961 + AT_rich Low_complexity Low_complexity 1 22 -23 1636 162 49 18 chr13 4767208 4767492 -97105677 - AluJb SINE Alu -19 293 1 22 21 0 62 chr13 4767492 4767518 -97105651 + AT_rich Low_complexity Low_complexity 22 45 0 2264 67 16 19 chr13 4767498 4767810 -97105359 - AluY SINE Alu 0 311 1 2596 52 0 0 chr13 4768160 4768468 -97104701 + AluY SINE Alu 1 308 -3 459 281 77 73 chr13 4769564 4769838 -97103331 + MLT1J LTR MaLR 52 326 -185 247 214 38 0 chr13 4769948 4770079 -97103090 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr13 4770271 4770507 -97102662 + MIR SINE MIR 19 262 0 234 0 0 0 chr13 4770536 4770562 -97102607 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1309 226 64 22 chr13 4771362 4771770 -97101399 + MLT1C LTR MaLR 42 466 -1 3356 256 59 34 chr13 4771771 4772960 -97100209 + MLT1C-int LTR MaLR 1 1219 -152 593 173 30 23 chr13 4773184 4773317 -97099852 + MLT1C-int LTR MaLR 1238 1371 0 262 238 60 12 chr13 4773317 4773401 -97099768 + MLT1C LTR MaLR 1 88 -379 654 234 43 59 chr13 4773434 4773806 -97099363 + L1ME2 LINE L1 4083 4448 -1698 * 2260 213 114 20 chr13 4773788 4774549 -97098620 + L1ME2 LINE L1 5317 6149 -15 2525 55 3 3 chr13 4775113 4775423 -97097746 - AluY SINE Alu -1 310 1 2200 45 59 10 chr13 4775433 4775721 -97097448 - AluY SINE Alu -9 302 1 272 200 27 13 chr13 4775817 4775892 -97097277 + L1M LINE L1 5322 5397 -903 2422 140 30 21 chr13 4777170 4777598 -97095571 + Tigger2a DNA MER2_type 1 432 -2 819 163 75 27 chr13 4777646 4777793 -97095376 + FRAM SINE Alu 4 157 -9 30 0 0 0 chr13 4779924 4779954 -97093215 + AT_rich Low_complexity Low_complexity 1 30 0 2514 50 0 0 chr13 4780211 4780514 -97092655 - AluY SINE Alu -8 303 1 21 57 0 0 chr13 4780711 4780746 -97092423 + AT_rich Low_complexity Low_complexity 1 35 0 312 91 0 0 chr13 4780820 4780864 -97092305 + (CA)n Simple_repeat Simple_repeat 2 45 0 216 0 0 0 chr13 4781883 4781907 -97091262 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 1050 33 8 0 chr13 4781926 4782048 -97091121 - AluY SINE Alu -188 123 1 718 68 4 2 chr13 4782269 4782519 -97090650 + AluY SINE Alu 1 307 -4 1714 229 106 8 chr13 4782690 4783210 -97089959 - MER90 LTR ERV1 -4 571 1 1976 129 0 10 chr13 4784121 4784415 -97088754 - AluSg SINE Alu -19 291 1 643 89 68 0 chr13 4784810 4785144 -97088025 + (TA)n Simple_repeat Simple_repeat 1 356 0 25 0 0 0 chr13 4785152 4785177 -97087992 + AT_rich Low_complexity Low_complexity 1 25 0 321 207 0 0 chr13 4785314 4785401 -97087768 + (CCA)n Simple_repeat Simple_repeat 3 89 0 564 241 0 0 chr13 4785422 4785596 -97087573 + (CCA)n Simple_repeat Simple_repeat 3 176 0 639 178 18 12 chr13 4785632 4785801 -97087368 + (CACCAT)n Simple_repeat Simple_repeat 1 170 0 853 300 104 34 chr13 4786351 4786952 -97086217 - MER115 DNA AcHobo -9 684 11 2495 108 17 120 chr13 4786957 4787405 -97085764 + LTR12 LTR ERV1 1 387 -327 1958 144 0 3 chr13 4787405 4787703 -97085466 + AluY SINE Alu 1 297 -14 2495 108 17 120 chr13 4787703 4787789 -97085380 + LTR12 LTR ERV1 387 480 -234 26 30 0 0 chr13 4787906 4787939 -97085230 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr13 4787988 4788019 -97085150 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr13 4788333 4788373 -97084796 + AT_rich Low_complexity Low_complexity 1 40 0 2402 57 7 13 chr13 4789400 4789699 -97083470 + AluY SINE Alu 1 297 -14 6757 53 21 0 chr13 4789901 4790114 -97083055 - L1PA7 LINE L1 -3 6151 5944 2035 68 0 19 chr13 4790114 4790378 -97082791 - AluY SINE Alu -15 296 38 6757 53 21 0 chr13 4790378 4791224 -97081945 - L1PA7 LINE L1 -210 5944 5107 653 39 39 10 chr13 4791224 4791326 -97081843 + L1P LINE L1 4617 4721 -1425 * 2047 240 77 47 chr13 4791321 4792828 -97080341 + L1ME2 LINE L1 4214 5784 -380 686 144 38 8 chr13 4792854 4793000 -97080169 - L1MD3 LINE L1 0 7995 7632 828 219 259 77 chr13 4793003 4793533 -97079636 + MER51A LTR ERV1 1 626 -8 2188 188 68 10 chr13 4793558 4794058 -97079111 - L1MC3 LINE L1 -157 7628 7100 986 212 92 15 chr13 4794111 4794436 -97078733 + L1ME2 LINE L1 5807 6156 -8 184 340 170 0 chr13 4795708 4795808 -97077361 - L2 LINE L2 -2 3270 3154 309 135 0 0 chr13 4796782 4796834 -97076335 + (CA)n Simple_repeat Simple_repeat 2 53 0 2409 69 0 0 chr13 4797444 4797750 -97075419 + AluY SINE Alu 1 306 -5 1415 271 19 60 chr13 4797750 4798506 -97074663 - L1ME3A LINE L1 -192 6238 5514 373 335 101 8 chr13 4798519 4798767 -97074402 - L1ME3A LINE L1 -905 5501 5231 307 284 142 24 chr13 4798970 4799139 -97074030 - L1ME3A LINE L1 -1313 5093 4905 651 195 84 39 chr13 4799147 4799301 -97073868 + FRAM SINE Alu 1 158 -18 341 264 49 68 chr13 4799304 4799467 -97073702 - L1ME3A LINE L1 -1511 4895 4736 23 54 0 0 chr13 4799502 4799539 -97073630 + AT_rich Low_complexity Low_complexity 1 37 0 338 194 94 70 chr13 4799727 4799964 -97073205 - L1MEc LINE L1 -3882 2524 2322 2506 151 26 16 chr13 4799978 4800482 -97072687 - L1MA8 LINE L1 0 6291 5783 21 36 0 0 chr13 4800636 4800664 -97072505 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr13 4800790 4800833 -97072336 + AT_rich Low_complexity Low_complexity 1 43 0 478 300 66 33 chr13 4800918 4801161 -97072008 - L1MEc LINE L1 -4989 1420 1170 205 135 39 0 chr13 4802517 4802569 -97070600 + (CGG)n Simple_repeat Simple_repeat 2 55 0 448 385 42 4 chr13 4803693 4803953 -97069216 + L3 LINE CR1 930 1199 -378 210 296 102 71 chr13 4804159 4804257 -97068912 + L3 LINE CR1 1472 1572 -5 1406 226 64 0 chr13 4804503 4804862 -97068307 - MLT1C-int LTR MaLR -989 382 1 1672 191 89 19 chr13 4804866 4805291 -97067878 - MLT1C LTR MaLR -7 460 6 573 248 47 0 chr13 4805743 4805892 -97067277 + MIR SINE MIR 81 236 -26 303 93 0 0 chr13 4806463 4806506 -97066663 + (TG)n Simple_repeat Simple_repeat 2 44 0 2844 25 0 0 chr13 4807368 4807708 -97065461 - AluYb8 SINE Alu 0 340 1 2252 130 24 3 chr13 4808138 4808516 -97064653 + L1PB3 LINE L1 5588 5973 -181 285 71 14 86 chr13 4808555 4808625 -97064544 + L1PB3 LINE L1 5956 6020 -134 2452 84 0 0 chr13 4812241 4812552 -97060617 + AluY SINE Alu 1 311 0 381 337 90 31 chr13 4812810 4813301 -97059868 - L2 LINE L2 -671 2643 2072 207 0 0 0 chr13 4814373 4814396 -97058773 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2221 88 7 0 chr13 4815949 4816243 -97056926 + AluY SINE Alu 1 296 -15 2549 51 0 3 chr13 4819222 4819534 -97053635 - AluY SINE Alu 0 311 1 1654 196 3 3 chr13 4820420 4820726 -97052443 + AluJo SINE Alu 1 306 -6 2994 209 22 57 chr13 4820727 4821232 -97051937 - L1MD1 LINE L1 -59 6183 5716 1785 170 0 21 chr13 4821232 4821540 -97051629 + AluJo SINE Alu 1 302 0 2994 209 22 57 chr13 4821540 4821883 -97051286 - L1MD1 LINE L1 -526 5716 5363 372 104 26 26 chr13 4821896 4821973 -97051196 + CT-rich Low_complexity Low_complexity 3 79 0 867 212 12 0 chr13 4821981 4822151 -97051018 - FRAM SINE Alu -4 172 1 1680 239 128 7 chr13 4822156 4822755 -97050414 - L1MD1 LINE L1 -821 5325 4654 886 177 0 6 chr13 4822753 4822928 -97050241 + L1MC/D LINE L1 5446 5619 -623 * 934 353 85 36 chr13 4823474 4824828 -97048341 + L2 LINE L2 748 2167 -1147 324 250 0 38 chr13 4824911 4824991 -97048178 + MER45A DNA AcHobo 1 77 -101 1502 135 23 0 chr13 4825044 4825304 -97047865 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr13 4825305 4825373 -97047796 + MER45A DNA AcHobo 100 168 -10 197 400 27 0 chr13 4825409 4825519 -97047650 + L2 LINE L2 2565 2677 -637 242 233 17 0 chr13 4825728 4825798 -97047371 - L1M1 LINE L1 -551 5752 5682 201 147 0 0 chr13 4825800 4825834 -97047335 + (TAGA)n Simple_repeat Simple_repeat 1 34 0 285 283 67 2 chr13 4825867 4826110 -97047059 - L1ME LINE L1 -484 5637 5375 608 283 124 75 chr13 4826239 4827113 -97046056 - L1ME LINE L1 -873 5273 4358 308 289 59 17 chr13 4827311 4827600 -97045569 - L1ME LINE L1 -2166 3980 3682 266 195 79 0 chr13 4828079 4828243 -97044926 + (TA)n Simple_repeat Simple_repeat 2 178 0 479 154 10 58 chr13 4828313 4828417 -97044752 - AluJb SINE Alu -13 299 201 * 513 176 0 0 chr13 4828410 4828495 -97044674 - FRAM SINE Alu -73 103 19 1903 240 118 16 chr13 4829246 4830001 -97043168 + L1MC4a LINE L1 6977 7808 0 22 0 0 0 chr13 4831197 4831219 -97041950 + AT_rich Low_complexity Low_complexity 1 22 0 186 309 0 0 chr13 4831661 4831703 -97041466 - L2 LINE L2 -89 3183 3142 198 0 0 0 chr13 4831849 4831871 -97041298 + (A)n Simple_repeat Simple_repeat 1 22 0 481 249 53 24 chr13 4831871 4832040 -97041129 - MER45C DNA AcHobo -61 892 719 467 295 211 21 chr13 4832090 4832565 -97040604 - MER45C DNA AcHobo -351 602 38 232 315 92 23 chr13 4832598 4832728 -97040441 - MIR SINE MIR -110 152 14 656 47 0 0 chr13 4833802 4833888 -97039281 - AluY SINE Alu -10 301 216 477 202 16 47 chr13 4833907 4834036 -97039133 - HUERS-P2 LTR ERV1 -2963 125 1 3239 129 79 66 chr13 4834036 4834804 -97038365 - LTR1 LTR ERV1 0 785 8 2141 144 5 52 chr13 4835505 4835909 -97037260 - MLT1B LTR MaLR -5 385 1 789 224 17 29 chr13 4837712 4837953 -97035216 - L1MA9 LINE L1 -186 6126 5889 207 0 0 0 chr13 4838781 4838804 -97034365 + (CA)n Simple_repeat Simple_repeat 2 24 0 391 280 251 6 chr13 4839038 4839213 -97033956 - MIR SINE MIR -11 251 34 607 210 11 11 chr13 4840048 4840224 -97032945 + (ATGGTG)n Simple_repeat Simple_repeat 4 179 0 280 339 51 26 chr13 4840662 4840857 -97032312 - L2 LINE L2 -1 3312 3113 318 106 0 0 chr13 4840934 4840981 -97032188 + (TA)n Simple_repeat Simple_repeat 1 47 0 297 75 0 0 chr13 4840974 4841014 -97032155 + (CA)n Simple_repeat Simple_repeat 2 41 0 * 3092 63 0 0 chr13 4841014 4841412 -97031757 - MLT2A1 LTR ERVL -46 398 1 2132 108 3 7 chr13 4842420 4842717 -97030452 - AluSg SINE Alu -14 296 1 234 0 0 0 chr13 4844196 4844222 -97028947 + (CA)n Simple_repeat Simple_repeat 2 27 0 2352 87 3 10 chr13 4844250 4844562 -97028607 - AluY SINE Alu -1 310 1 332 238 109 30 chr13 4844883 4844984 -97028185 + MER110-int LTR ERV1 2748 2856 -1791 324 157 54 0 chr13 4845195 4845361 -97027808 + (TA)n Simple_repeat Simple_repeat 1 175 0 2230 106 0 3 chr13 4845606 4845899 -97027270 - AluY SINE Alu -19 292 1 2303 93 0 3 chr13 4846017 4846318 -97026851 - AluY SINE Alu -11 300 1 23 0 0 0 chr13 4846410 4846433 -97026736 + AT_rich Low_complexity Low_complexity 1 23 0 559 272 146 7 chr13 4846434 4846668 -97026501 - MIR SINE MIR -21 241 3 778 161 13 7 chr13 4846701 4846850 -97026319 + MER58B DNA MER1_type 177 326 -15 2314 50 7 27 chr13 4847186 4847486 -97025683 + AluY SINE Alu 1 294 -17 199 41 102 0 chr13 4847690 4847739 -97025430 + (CCTG)n Simple_repeat Simple_repeat 1 54 0 2467 66 0 0 chr13 4847911 4848213 -97024956 + AluY SINE Alu 1 302 -9 315 0 0 0 chr13 4849387 4849422 -97023747 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 26 0 26 chr13 4849528 4849540 -97023629 + AT_rich Low_complexity Low_complexity 1 12 -26 4811 90 20 23 chr13 4849540 4849896 -97023273 + L1PB1 LINE L1 5417 5772 -379 387 0 0 0 chr13 4849896 4849939 -97023230 + (CA)n Simple_repeat Simple_repeat 2 44 0 4811 90 20 23 chr13 4849939 4849957 -97023212 + L1PB1 LINE L1 5772 5789 -362 1635 100 4 4 chr13 4849957 4850186 -97022983 + AluY SINE Alu 67 295 -16 4811 90 20 23 chr13 4850186 4850361 -97022808 + L1PB1 LINE L1 5789 5963 -188 3666 107 99 31 chr13 4850361 4850954 -97022215 - LTR12 LTR ERV1 0 688 46 2395 76 3 0 chr13 4850954 4851256 -97021913 + AluY SINE Alu 1 303 -8 3666 107 99 31 chr13 4851256 4851306 -97021863 - LTR12 LTR ERV1 -642 46 1 4811 90 20 23 chr13 4851306 4851489 -97021680 + L1PB1 LINE L1 5963 6149 -2 21 26 0 26 chr13 4851489 4851515 -97021654 + AT_rich Low_complexity Low_complexity 12 38 0 23 54 0 0 chr13 4851799 4851836 -97021333 + AT_rich Low_complexity Low_complexity 1 37 0 1786 139 7 53 chr13 4853271 4853573 -97019596 + AluSx SINE Alu 1 288 -24 287 299 58 73 chr13 4854126 4854263 -97018906 + L2 LINE L2 3138 3272 0 1005 149 56 5 chr13 4855314 4855528 -97017641 + L1MC3 LINE L1 7470 7694 -91 * 1723 164 138 61 chr13 4855523 4855721 -97017448 + L1MA6 LINE L1 5754 5935 -365 1800 155 14 0 chr13 4855721 4856031 -97017138 + AluSx SINE Alu 1 314 0 1723 164 138 61 chr13 4856031 4856335 -97016834 + L1MA6 LINE L1 5935 6298 -2 554 138 21 0 chr13 4856332 4856426 -97016743 + L1MC3 LINE L1 7677 7772 -13 * 23 0 0 0 chr13 4857960 4857983 -97015186 + AT_rich Low_complexity Low_complexity 1 23 0 269 334 141 10 chr13 4859223 4859432 -97013737 + MIR SINE MIR 18 248 -14 1673 167 37 14 chr13 4859653 4860007 -97013162 + L1MA4 LINE L1 5939 6300 0 924 269 48 85 chr13 4860190 4860674 -97012495 - MLT1K LTR MaLR 0 588 123 220 342 89 0 chr13 4861445 4861524 -97011645 + MIR SINE MIR 26 111 -97 4569 167 26 2 chr13 4862041 4863151 -97010018 + L1MA4A LINE L1 4431 5564 -736 3186 141 94 0 chr13 4863152 4863757 -97009412 + L1MA4A LINE L1 5639 6300 -3 200 211 18 18 chr13 4863864 4863921 -97009248 + (TG)n Simple_repeat Simple_repeat 2 58 0 3924 137 31 3 chr13 4863965 4864664 -97008505 + L1MA6 LINE L1 5582 6300 0 607 271 49 31 chr13 4864738 4864963 -97008206 + MIR SINE MIR 34 262 0 2133 166 64 5 chr13 4865060 4865464 -97007705 + MSTA LTR MaLR 1 428 0 279 183 28 14 chr13 4865552 4865623 -97007546 - Tigger5 DNA MER2_type -1 2322 2251 2458 55 13 0 chr13 4865847 4866154 -97007015 + AluY SINE Alu 1 311 0 21 36 0 0 chr13 4866154 4866182 -97006987 + AT_rich Low_complexity Low_complexity 1 28 0 244 61 0 41 chr13 4866553 4866602 -97006567 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 3043 121 116 82 chr13 4866717 4867476 -97005693 - LTR1 LTR ERV1 0 785 1 23 0 0 0 chr13 4867741 4867764 -97005405 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr13 4868160 4868181 -97004988 + (TA)n Simple_repeat Simple_repeat 2 22 0 2326 96 3 16 chr13 4868184 4868498 -97004671 - AluY SINE Alu -1 310 1 1996 111 11 0 chr13 4868790 4869061 -97004108 - AluSp SINE Alu -16 297 24 2532 118 8 0 chr13 4870749 4871121 -97002048 + THE1C LTR MaLR 1 375 0 236 204 0 0 chr13 4871613 4871662 -97001507 + A-rich Low_complexity Low_complexity 1 49 0 2500 62 7 0 chr13 4873173 4873482 -96999687 - AluY SINE Alu 0 311 1 314 61 20 0 chr13 4873484 4873533 -96999636 + (TTTG)n Simple_repeat Simple_repeat 2 51 0 585 253 22 11 chr13 4873607 4873785 -96999384 - HAL1 LINE L1 -705 1802 1623 204 347 14 20 chr13 4874310 4874457 -96998712 + CT-rich Low_complexity Low_complexity 3 148 0 320 267 108 23 chr13 4874657 4874833 -96998336 - HAL1 LINE L1 -886 1621 1431 2192 84 3 10 chr13 4874868 4875164 -96998005 - AluY SINE Alu -17 294 1 258 274 0 0 chr13 4875175 4875226 -96997943 + MIR SINE MIR 73 123 -85 1974 115 36 20 chr13 4875255 4875559 -96997610 - AluSq SINE Alu -4 309 1 190 302 19 0 chr13 4875610 4875663 -96997506 + L2 LINE L2 2983 3036 -236 2167 140 62 12 chr13 4875682 4876088 -96997081 + MSTB LTR MaLR 1 426 0 2329 105 0 0 chr13 4876107 4876411 -96996758 - AluSg1 SINE Alu -5 304 1 483 307 34 11 chr13 4876830 4877006 -96996163 + MIR SINE MIR 14 193 -69 424 141 45 34 chr13 4878052 4878229 -96994940 + (TA)n Simple_repeat Simple_repeat 1 179 0 6143 149 59 19 chr13 4878284 4879468 -96993701 + Tigger3b DNA MER2_type 1 1231 0 22 0 0 0 chr13 4880350 4880372 -96992797 + AT_rich Low_complexity Low_complexity 1 22 0 643 260 41 6 chr13 4881300 4881469 -96991700 - MIR SINE MIR -14 248 74 2253 90 17 0 chr13 4881479 4881778 -96991391 + AluY SINE Alu 1 304 -7 780 202 85 4 chr13 4881778 4882050 -96991119 + L1MB3 LINE L1 3041 3334 -2812 1996 92 46 4 chr13 4882061 4882342 -96990827 + AluSc SINE Alu 1 293 -16 4324 200 42 14 chr13 4882343 4884148 -96989021 + L1MB3 LINE L1 4327 6181 -2 306 343 126 0 chr13 4884489 4884664 -96988505 - MIR SINE MIR -17 245 49 2442 59 3 3 chr13 4884697 4885003 -96988166 - AluY SINE Alu -5 306 1 435 38 0 0 chr13 4885479 4885532 -96987637 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chr13 4885924 4885953 -96987216 + AT_rich Low_complexity Low_complexity 1 29 0 1996 141 0 10 chr13 4887127 4887440 -96985729 - AluSx SINE Alu -2 310 1 197 116 0 23 chr13 4888150 4888193 -96984976 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 24 53 0 0 chr13 4888325 4888363 -96984806 + AT_rich Low_complexity Low_complexity 1 38 0 470 314 100 32 chr13 4888651 4888722 -96984447 - L1ME4a LINE L1 -209 5912 5847 2179 109 7 0 chr13 4888722 4889016 -96984153 - AluSp SINE Alu -7 306 11 470 314 100 32 chr13 4889016 4889285 -96983884 - L1ME4a LINE L1 -274 5847 5549 227 255 0 0 chr13 4889829 4889876 -96983293 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 85 0 0 chr13 4890821 4890880 -96982289 + AT_rich Low_complexity Low_complexity 1 59 0 355 326 68 7 chr13 4890891 4891038 -96982131 + MIR SINE MIR 21 176 -86 374 293 95 48 chr13 4891587 4892007 -96981162 - L1M4 LINE L1 -2955 3191 2752 479 194 40 49 chr13 4892404 4892443 -96980726 - L1ME1 LINE L1 -5 6161 6123 2507 41 0 3 chr13 4892443 4892737 -96980432 + AluY SINE Alu 1 293 -18 479 194 40 49 chr13 4892737 4892892 -96980277 - L1ME1 LINE L1 -43 6123 5965 336 232 37 0 chr13 4893049 4893131 -96980038 + L1MC1 LINE L1 5997 6081 -252 330 258 6 50 chr13 4893134 4893293 -96979876 - MER52A LTR ERV1 -3 1752 1601 623 206 21 185 chr13 4893293 4893886 -96979283 - MER52A LTR ERV1 -141 495 283 1704 169 11 0 chr13 4894111 4894389 -96978780 - AluJo SINE Alu -31 281 1 235 299 93 31 chr13 4894636 4894733 -96978436 + L2 LINE L2 3162 3264 -8 363 302 76 6 chr13 4894850 4895022 -96978147 + MIR SINE MIR 21 204 -58 989 283 187 38 chr13 4897420 4898445 -96974724 - L2 LINE L2 -52 3261 1968 2151 130 3 13 chr13 4899850 4900165 -96973004 - AluSq SINE Alu -1 312 1 207 139 0 0 chr13 4900577 4900613 -96972556 + (TG)n Simple_repeat Simple_repeat 2 37 0 348 255 89 25 chr13 4900847 4901004 -96972165 - MLT1D LTR MaLR -262 243 77 4246 217 28 28 chr13 4901039 4902024 -96971145 + L1MC2 LINE L1 4378 5361 -983 2629 90 19 3 chr13 4902024 4902391 -96970778 + THE1C LTR MaLR 1 373 -2 4246 217 28 28 chr13 4902391 4903247 -96969922 + L1MC2 LINE L1 5361 6226 -118 321 26 0 0 chr13 4903247 4903285 -96969884 + (TG)n Simple_repeat Simple_repeat 1 38 0 4246 217 28 28 chr13 4903285 4903405 -96969764 + L1MC2 LINE L1 6226 6344 0 3054 171 35 62 chr13 4903381 4903784 -96969385 + L1MB7 LINE L1 5297 5709 -475 * 2018 91 3 24 chr13 4903784 4904098 -96969071 + AluY SINE Alu 1 308 0 3054 171 35 62 chr13 4904098 4904550 -96968619 + L1MB7 LINE L1 5709 6130 -54 2271 72 21 0 chr13 4904651 4904942 -96968227 - AluY SINE Alu -14 297 1 2317 98 0 25 chr13 4905486 4905801 -96967368 - AluY SINE Alu -4 307 1 3649 171 17 65 chr13 4905845 4906828 -96966341 + L1MA8 LINE L1 4857 5760 -531 2322 107 0 0 chr13 4906828 4907137 -96966032 + AluSg SINE Alu 1 309 -1 3649 171 17 65 chr13 4907137 4907450 -96965719 + L1MA8 LINE L1 5760 6086 -205 210 375 55 34 chr13 4907604 4907841 -96965328 - L2 LINE L2 -661 2653 2412 2175 111 7 0 chr13 4907964 4908261 -96964908 + AluSg SINE Alu 1 299 -11 1603 174 7 43 chr13 4908580 4908884 -96964285 - AluJb SINE Alu -15 297 5 2511 73 0 0 chr13 4908907 4909208 -96963961 - AluY SINE Alu -4 307 7 678 84 0 0 chr13 4909549 4909644 -96963525 - AluY SINE Alu 0 311 217 23 33 0 0 chr13 4909929 4909959 -96963210 + AT_rich Low_complexity Low_complexity 1 30 0 1550 195 25 42 chr13 4913123 4913554 -96959615 - L1MB7 LINE L1 -9 6175 5752 1169 248 26 0 chr13 4913558 4913869 -96959300 + L1MB7 LINE L1 5404 5722 -456 238 302 10 21 chr13 4914789 4914885 -96958284 + L2 LINE L2 3177 3271 -1 266 328 136 39 chr13 4914943 4915501 -96957668 - L2 LINE L2 -573 2741 2130 1290 218 120 19 chr13 4915592 4916009 -96957160 + MLT1C LTR MaLR 3 461 -6 46 45 0 0 chr13 4917720 4917787 -96955382 + AT_rich Low_complexity Low_complexity 1 67 0 2160 157 0 10 chr13 4918409 4918722 -96954447 - AluSx SINE Alu -2 310 1 180 0 0 0 chr13 4918800 4918820 -96954349 + (CA)n Simple_repeat Simple_repeat 1 20 0 26 23 0 23 chr13 4919143 4919166 -96954003 + AT_rich Low_complexity Low_complexity 1 24 -19 2165 94 0 3 chr13 4919166 4919452 -96953717 + AluSg SINE Alu 1 285 -25 26 23 0 23 chr13 4919452 4919472 -96953697 + AT_rich Low_complexity Low_complexity 24 43 0 279 285 69 32 chr13 4920048 4920294 -96952875 - L1M4 LINE L1 -1995 4151 3897 228 35 0 0 chr13 4920367 4920396 -96952773 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 298 298 114 32 chr13 4920663 4920821 -96952348 + L2 LINE L2 3102 3272 0 610 287 36 24 chr13 4921120 4921454 -96951715 + L1MEd LINE L1 920 1257 -4862 352 316 94 33 chr13 4921545 4921757 -96951412 + L1MEd LINE L1 1437 1661 -4649 1538 95 0 25 chr13 4921888 4922131 -96951038 + L1MC/D LINE L1 5321 5557 -787 325 298 12 0 chr13 4922231 4922315 -96950854 - Tigger7 DNA MER2_type -318 232 148 4468 141 47 44 chr13 4922356 4922449 -96950720 - L1MA7 LINE L1 -60 6231 6140 3352 136 7 31 chr13 4922449 4923037 -96950132 + L1PA16 LINE L1 5584 6157 -9 4468 141 47 44 chr13 4923037 4923899 -96949270 - L1MA7 LINE L1 -151 6140 5273 2173 100 0 0 chr13 4926604 4926884 -96946285 + AluSc SINE Alu 1 280 -29 2409 82 0 6 chr13 4926920 4927235 -96945934 + AluSq SINE Alu 1 313 0 199 324 28 0 chr13 4927255 4927326 -96945843 + MIR SINE MIR 57 129 -133 302 358 7 7 chr13 4927771 4927922 -96945247 + LTR33 LTR ERVL 1 151 -370 197 197 16 0 chr13 4928155 4928216 -96944953 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 929 118 0 0 chr13 4928675 4928802 -96944367 - AluJb SINE Alu -16 296 170 733 107 0 9 chr13 4928918 4929030 -96944139 + LTR1 LTR ERV1 382 492 -293 1660 94 0 18 chr13 4929030 4929254 -96943915 - AluY SINE Alu -91 220 1 362 208 28 0 chr13 4929256 4929362 -96943807 + L1ME2 LINE L1 4611 4719 -1427 * 5057 144 42 22 chr13 4929338 4930564 -96942605 + L1MA8 LINE L1 5042 6290 -1 1780 244 47 43 chr13 4930596 4931672 -96941497 + L1ME2 LINE L1 4694 5781 -381 2315 100 0 25 chr13 4931672 4931851 -96941318 - AluSq SINE Alu -2 311 142 2219 98 3 49 chr13 4931851 4932179 -96940990 - AluSp SINE Alu 0 313 1 2315 100 0 25 chr13 4932179 4932318 -96940851 - AluSq SINE Alu -171 142 1 1780 244 47 43 chr13 4932318 4932391 -96940778 + L1ME2 LINE L1 5781 5852 -310 290 311 40 13 chr13 4932412 4932563 -96940606 + L1ME2 LINE L1 5910 6064 -100 * 5386 211 92 52 chr13 4932558 4934213 -96938956 + L1PA13 LINE L1 5293 5438 -725 418 162 0 0 chr13 4934213 4934281 -96938888 + MLT1A1 LTR MaLR 248 315 -50 5386 211 92 52 chr13 4934281 4935036 -96938133 + L1PA13 LINE L1 5438 6162 -1 253 270 40 0 chr13 4935042 4935168 -96938001 + (TA)n Simple_repeat Simple_repeat 1 131 0 189 0 0 0 chr13 4936034 4936055 -96937114 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 277 384 38 27 chr13 4936126 4936311 -96936858 - MIR SINE MIR -74 188 2 6800 114 7 9 chr13 4936494 4937465 -96935704 - LTR5 LTR ERVK 0 969 1 493 291 53 68 chr13 4937782 4937878 -96935291 - MIR SINE MIR 0 262 166 2225 109 0 26 chr13 4937878 4938189 -96934980 - AluSc SINE Alu -6 303 1 493 291 53 68 chr13 4938189 4938357 -96934812 - MIR SINE MIR -96 166 2 2060 120 21 3 chr13 4938810 4939101 -96934068 - AluSq SINE Alu -17 296 1 2064 156 0 0 chr13 4939516 4939818 -96933351 + AluSx SINE Alu 1 302 -10 2449 83 0 0 chr13 4940383 4940683 -96932486 - AluY SINE Alu -11 300 1 2135 106 0 0 chr13 4941235 4941552 -96931617 - AluY SINE Alu 0 317 1 4634 170 14 21 chr13 4941563 4942282 -96930887 - L1MA6 LINE L1 -5 6295 5583 1673 94 0 45 chr13 4942282 4942526 -96930643 - AluSc SINE Alu -5 304 72 4634 170 14 21 chr13 4942526 4942737 -96930432 - L1MA6 LINE L1 -717 5583 5372 247 224 0 0 chr13 4942739 4942797 -96930372 + L1 LINE L1 5091 5148 -998 1495 221 97 68 chr13 4942933 4943040 -96930129 - MLT1E1 LTR MaLR -59 595 493 1948 138 3 42 chr13 4943040 4943352 -96929817 - AluSx SINE Alu -12 300 1 1495 221 97 68 chr13 4943352 4943413 -96929756 - MLT1E1 LTR MaLR -161 493 435 228 35 0 0 chr13 4943413 4943442 -96929727 + (TG)n Simple_repeat Simple_repeat 1 29 0 1495 221 97 68 chr13 4943442 4943850 -96929319 - MLT1E1 LTR MaLR -219 435 1 2447 64 18 12 chr13 4944061 4944391 -96928778 - L1PA8 LINE L1 0 6172 5841 2211 95 0 14 chr13 4944402 4944696 -96928473 - AluSx SINE Alu -18 294 5 403 338 35 25 chr13 4945023 4945337 -96927832 + L1MB5 LINE L1 39 355 -6029 3119 238 32 44 chr13 4945458 4946756 -96926413 + L1MB5 LINE L1 554 1842 -4542 827 137 8 23 chr13 4946805 4946936 -96926233 + AluSg/x SINE Alu 161 289 -20 4356 237 55 68 chr13 4946936 4948881 -96924288 + L1MB5 LINE L1 3279 5247 -1163 2238 101 0 7 chr13 4948881 4949179 -96923990 + AluY SINE Alu 1 296 -15 4356 237 55 68 chr13 4949179 4949592 -96923577 + L1MB5 LINE L1 5247 5664 -746 2029 147 0 10 chr13 4949592 4949904 -96923265 - AluSq SINE Alu -4 309 1 4356 237 55 68 chr13 4949904 4949994 -96923175 + L1MB5 LINE L1 5664 5754 -656 1454 162 3 81 chr13 4949994 4950278 -96922891 + AluJo SINE Alu 15 276 -36 4356 237 55 68 chr13 4950278 4950989 -96922180 + L1MB5 LINE L1 5754 6402 -8 341 306 91 30 chr13 4951061 4951260 -96921909 + MIR SINE MIR 46 256 -6 1681 181 18 15 chr13 4951787 4952129 -96921040 + MER2 DNA MER2_type 1 343 -1 1317 113 16 0 chr13 4952230 4952416 -96920753 - AluSp SINE Alu -124 189 1 2183 82 0 0 chr13 4952537 4952818 -96920351 - AluSq SINE Alu -32 281 1 629 302 57 41 chr13 4953020 4953480 -96919689 + MER21-int LTR ERV1 3630 4096 -95 247 362 32 0 chr13 4954646 4954740 -96918429 + L2 LINE L2 3212 3308 -5 24 53 0 0 chr13 4955498 4955536 -96917633 + AT_rich Low_complexity Low_complexity 1 38 0 33 66 0 0 chr13 4955557 4955618 -96917551 + AT_rich Low_complexity Low_complexity 1 61 0 2324 72 3 0 chr13 4956516 4956807 -96916362 - AluY SINE Alu -19 292 1 957 157 0 0 chr13 4960614 4960767 -96912402 + MSTC LTR MaLR 1 153 -275 1640 164 4 4 chr13 4960797 4961059 -96912110 + AluJo SINE Alu 29 290 -22 1521 147 27 31 chr13 4961063 4961356 -96911813 + MSTC LTR MaLR 137 428 0 2368 67 0 7 chr13 4961968 4962266 -96910903 + AluY SINE Alu 1 296 -15 2117 109 3 0 chr13 4962275 4962558 -96910611 + AluSg SINE Alu 7 290 -20 22 0 0 0 chr13 4963400 4963422 -96909747 + AT_rich Low_complexity Low_complexity 1 22 0 369 192 92 23 chr13 4963451 4963581 -96909588 - L1MC5 LINE L1 -39 7922 7784 22 35 0 0 chr13 4963924 4963953 -96909216 + AT_rich Low_complexity Low_complexity 1 29 0 2178 71 0 3 chr13 4963953 4964272 -96908897 + AluY SINE Alu 1 318 0 2237 89 0 32 chr13 4964690 4965004 -96908165 + AluY SINE Alu 1 304 -7 2606 48 0 7 chr13 4965459 4965769 -96907400 - AluY SINE Alu -1 310 3 1064 250 113 46 chr13 4967170 4967605 -96905564 - L1ME3A LINE L1 -9 6161 5664 2534 68 0 6 chr13 4967605 4967916 -96905253 - AluY SINE Alu -2 309 1 1064 250 113 46 chr13 4967916 4968155 -96905014 - L1ME3A LINE L1 -506 5664 5442 338 251 145 51 chr13 4968331 4968563 -96904606 + MLT1G3 LTR MaLR 156 447 -108 870 251 163 44 chr13 4968723 4969195 -96903974 - MLT1G LTR MaLR 0 590 30 1077 155 0 0 chr13 4969448 4969609 -96903560 - AluSg/x SINE Alu -15 295 135 581 265 105 43 chr13 4969620 4969993 -96903176 - L1ME3A LINE L1 -1036 5110 4715 255 61 0 0 chr13 4970004 4970037 -96903132 + (CA)n Simple_repeat Simple_repeat 2 34 0 863 245 88 58 chr13 4970037 4970592 -96902577 - L1ME3A LINE L1 -1531 4615 4044 7308 53 7 47 chr13 4970770 4971759 -96901410 - SVA Other Other -3 1383 434 261 0 0 0 chr13 4971876 4971905 -96901264 + (GGGAGA)n Simple_repeat Simple_repeat 2 30 0 364 304 0 40 chr13 4972073 4972181 -96900988 + L2 LINE L2 3194 3298 -15 2247 100 0 3 chr13 4972181 4972482 -96900687 + AluY SINE Alu 1 300 -11 364 304 0 40 chr13 4972482 4972498 -96900671 + L2 LINE L2 3298 3313 0 692 11 11 0 chr13 4973723 4973810 -96899359 - L1PA3 LINE L1 0 6155 6068 1906 182 11 3 chr13 4974102 4974471 -96898698 - L1MB1 LINE L1 -103 6065 5694 272 172 10 91 chr13 4974477 4974576 -96898593 + L1MB1 LINE L1 5587 5677 -494 308 305 76 8 chr13 4974585 4974703 -96898466 - MIR SINE MIR -122 140 15 23 0 0 0 chr13 4974944 4974967 -96898202 + AT_rich Low_complexity Low_complexity 1 23 0 2456 70 0 0 chr13 4975386 4975687 -96897482 + AluY SINE Alu 1 301 -10 2964 200 16 8 chr13 4976552 4977260 -96895909 - L1MD2 LINE L1 -471 5888 5177 345 314 86 69 chr13 4977269 4977514 -96895655 + L1ME3 LINE L1 5618 5866 -296 359 31 31 155 chr13 4977530 4977691 -96895478 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 336 48 0 0 chr13 4978130 4978172 -96894997 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 2462 80 3 16 chr13 4978466 4978780 -96894389 - AluY SINE Alu -1 310 1 2435 122 11 6 chr13 4979292 4979654 -96893515 + THE1B LTR MaLR 1 364 0 11102 95 33 2 chr13 4979654 4981186 -96891983 + THE1B-int LTR MaLR 1 1580 0 2542 112 3 8 chr13 4981186 4981552 -96891617 + THE1B LTR MaLR 1 364 0 649 158 73 43 chr13 4981850 4982014 -96891155 - MLT1E LTR MaLR -63 530 362 * 1507 199 13 10 chr13 4982006 4982317 -96890852 + MLT1A2 LTR MaLR 63 374 0 291 182 23 11 chr13 4982523 4982611 -96890558 + CT-rich Low_complexity Low_complexity 3 91 0 2478 68 3 0 chr13 4983185 4983493 -96889676 + AluY SINE Alu 2 310 -1 950 182 152 20 chr13 4983887 4984183 -96888986 + LTR54B LTR ERV1 3 337 -161 802 223 107 93 chr13 4984372 4984812 -96888357 - MER4C LTR ERV1 0 465 20 297 0 0 0 chr13 4984815 4984848 -96888321 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2009 108 7 0 chr13 4984848 4985126 -96888043 - AluSx SINE Alu -32 280 1 5873 145 45 91 chr13 4985127 4985528 -96887641 - LTR49-int LTR ERV1 -987 5344 4926 2424 69 0 7 chr13 4985528 4985834 -96887335 + AluY SINE Alu 1 304 -7 5873 145 45 91 chr13 4985834 4985877 -96887292 - LTR49-int LTR ERV1 -1405 4926 4883 2400 93 7 3 chr13 4985877 4986187 -96886982 + AluY SINE Alu 1 311 0 5873 145 45 91 chr13 4986187 4986284 -96886885 - LTR49-int LTR ERV1 -1448 4883 4783 2665 122 38 2 chr13 4986284 4986701 -96886468 - L1PA16 LINE L1 -9 6157 5726 5873 145 45 91 chr13 4986701 4987172 -96885997 - LTR49-int LTR ERV1 -1548 4783 4292 360 150 17 0 chr13 4987172 4987232 -96885937 + AluS SINE Alu 233 293 -7 5873 145 45 91 chr13 4987232 4987723 -96885446 - LTR49-int LTR ERV1 -2039 4292 3853 2216 112 13 0 chr13 4987723 4988026 -96885143 + AluSq SINE Alu 1 307 -6 5873 145 45 91 chr13 4988026 4988071 -96885098 - LTR49-int LTR ERV1 -2478 3853 3807 1201 99 17 28 chr13 4988071 4988252 -96884917 - 7SLRNA srpRNA srpRNA -9 311 133 2526 196 69 94 chr13 4988252 4989249 -96883920 - LTR49-int LTR ERV1 -1606 3274 2303 3883 30 17 0 chr13 4989252 4989725 -96883444 + LTR2B LTR ERV1 10 490 0 1136 227 42 73 chr13 4989725 4990285 -96882884 - LTR49-int LTR ERV1 -4263 3274 1580 462 222 26 98 chr13 4990254 4990407 -96882762 - LTR49-int LTR ERV1 -4146 2185 2044 * 1270 151 36 0 chr13 4990413 4990638 -96882531 + MER50 LTR ERV1 1 233 -501 2409 72 0 3 chr13 4990829 4991135 -96882034 - AluY SINE Alu -6 305 1 2192 222 62 22 chr13 4991135 4991780 -96881389 - Tigger6a DNA MER2_type -64 1019 349 2012 92 14 24 chr13 4991802 4992094 -96881075 - AluSx SINE Alu -23 289 1 180 0 0 0 chr13 4992275 4992295 -96880874 + (T)n Simple_repeat Simple_repeat 1 20 0 1183 107 0 0 chr13 4992318 4992477 -96880692 - AluSq SINE Alu -33 280 122 183 152 0 0 chr13 4992477 4992523 -96880646 + (TA)n Simple_repeat Simple_repeat 2 47 0 885 88 72 0 chr13 4992526 4992651 -96880518 - AluSg SINE Alu -176 134 1 240 226 0 0 chr13 4993544 4993606 -96879563 + T-rich Low_complexity Low_complexity 1 62 0 318 286 188 45 chr13 4993609 4993763 -96879406 - MIR3 SINE MIR -13 195 20 26 30 0 0 chr13 4995252 4995285 -96877884 + AT_rich Low_complexity Low_complexity 1 33 0 2126 78 34 3 chr13 4995727 4996020 -96877149 - AluY SINE Alu -9 302 1 1122 138 16 0 chr13 4996202 4996391 -96876778 + MER4B LTR ERV1 400 591 -19 786 85 53 116 chr13 4996391 4996580 -96876589 + PABL_A-int LTR ERV1 629 805 -4210 * 3619 73 93 41 chr13 4996577 4996776 -96876393 + PABL_A-int LTR ERV1 1803 1990 -4608 1985 124 22 38 chr13 4996776 4997091 -96876078 - AluSp SINE Alu -3 310 1 3619 73 93 41 chr13 4997091 4997550 -96875619 + PABL_A-int LTR ERV1 1990 2495 -4103 1064 145 90 10 chr13 4997550 4997750 -96875419 - LTR8 LTR ERV1 -434 257 42 910 83 8 0 chr13 4997750 4997871 -96875298 - AluSp SINE Alu -16 297 176 3703 60 43 0 chr13 4997871 4998341 -96874828 + LTR2B LTR ERV1 1 490 0 5360 92 58 19 chr13 4998341 4999200 -96873969 + Harlequin LTR ERV1 1 893 -6003 * 6257 68 46 0 chr13 4999195 5000153 -96873016 + Harlequin LTR ERV1 1572 2573 -4323 23074 112 11 8 chr13 5000154 5003686 -96869483 + Harlequin LTR ERV1 3353 6892 -4 3707 55 45 0 chr13 5003689 5004158 -96869011 + LTR2B LTR ERV1 1 490 0 352 105 35 0 chr13 5004158 5004215 -96868954 - AluSp SINE Alu -124 179 121 862 132 0 22 chr13 5004215 5004351 -96868818 - AluJo/FLAM SINE Alu -169 133 1 2043 83 0 90 chr13 5004351 5004397 -96868772 + MER4A-int LTR ERV1 2684 2733 -3865 2538 77 0 3 chr13 5004397 5004709 -96868460 - AluY SINE Alu 0 311 1 2043 83 0 90 chr13 5004709 5005094 -96868075 + MER4A-int LTR ERV1 2733 3076 -3522 8458 104 60 37 chr13 5005274 5005367 -96867802 + MER4A-int LTR ERV1 4953 5042 -1556 2058 94 7 7 chr13 5005367 5005653 -96867516 + AluY SINE Alu 1 286 -25 8458 104 60 37 chr13 5005653 5007169 -96866000 + MER4A-int LTR ERV1 5042 6598 0 250 111 22 22 chr13 5007198 5007243 -96865926 + MER4A LTR ERV1 54 98 -566 1719 120 8 46 chr13 5007243 5007601 -96865568 + MER4A LTR ERV1 262 664 0 * 2741 170 8 40 chr13 5007601 5008113 -96865056 + MER50 LTR ERV1 228 722 -12 231 203 0 0 chr13 5008184 5008243 -96864926 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 * 432 244 43 43 chr13 5008239 5008385 -96864784 - MER41-int LTR ERV1 -3703 2243 2121 2584 113 86 60 chr13 5008482 5008935 -96864234 + MER4C LTR ERV1 1 465 0 317 185 62 0 chr13 5008960 5009025 -96864144 + LTR9 LTR ERV1 544 612 0 6689 157 114 75 chr13 5009025 5009790 -96863379 + LTR9-int LTR ERV1 283 1017 -5581 321 26 0 0 chr13 5009790 5009828 -96863341 + (TG)n Simple_repeat Simple_repeat 2 39 0 6689 157 114 75 chr13 5009828 5010621 -96862548 + LTR9-int LTR ERV1 1017 1995 -4603 2072 142 0 0 chr13 5010621 5010916 -96862253 + AluSx SINE Alu 1 295 -17 6689 157 114 75 chr13 5010916 5011427 -96861742 + LTR9-int LTR ERV1 1995 2485 -4113 416 45 80 0 chr13 5011590 5011678 -96861491 + GA-rich Low_complexity Low_complexity 2 96 0 4085 147 82 57 chr13 5012599 5012632 -96860537 + LTR9-int LTR ERV1 2924 2955 -3643 2231 99 3 0 chr13 5012632 5012925 -96860244 + AluY SINE Alu 1 294 -17 4085 147 82 57 chr13 5012925 5013925 -96859244 + LTR9-int LTR ERV1 2955 3983 -2615 4735 119 122 46 chr13 5013927 5015367 -96857802 - pTR5 LTR ERV1 0 2438 743 6853 139 56 50 chr13 5015367 5016754 -96856415 + LTR9-int LTR ERV1 3979 5357 -1241 408 20 0 0 chr13 5016754 5016803 -96856366 + (TA)n Simple_repeat Simple_repeat 2 50 0 1936 151 0 0 chr13 5016808 5017092 -96856077 - AluSx SINE Alu -28 284 1 6853 139 56 50 chr13 5017092 5017129 -96856040 + LTR9-int LTR ERV1 5360 5417 -1181 829 179 155 29 chr13 5017137 5017344 -96855825 + MER4C LTR ERV1 1 233 -232 3589 112 47 4 chr13 5017359 5017849 -96855320 + MER9 LTR ERVK 1 511 0 1051 62 0 0 chr13 5017849 5017979 -96855190 + HERVK9 LTR ERVK 1 130 -5786 700 255 60 39 chr13 5017991 5018367 -96854802 + MER4C LTR ERV1 141 465 0 643 167 35 21 chr13 5018452 5018596 -96854573 + MER4C-int LTR ERV1 109 254 -6344 227 213 21 0 chr13 5018781 5018828 -96854341 + LTR49 LTR ERV1 261 308 -287 554 174 84 58 chr13 5018850 5019005 -96854164 + MER4C-int LTR ERV1 995 1153 -5178 2808 223 30 15 chr13 5019276 5021137 -96852032 + L1MB8 LINE L1 2865 6169 -9 186 43 0 0 chr13 5021145 5021168 -96852001 + (CA)n Simple_repeat Simple_repeat 1 23 0 3260 271 32 36 chr13 5021176 5022267 -96850902 - MER110-int LTR ERV1 -1547 3100 2014 2221 189 62 77 chr13 5022283 5022385 -96850784 - MLT1A1-int LTR MaLR -1180 555 453 2422 100 3 0 chr13 5022385 5022695 -96850474 + AluSx SINE Alu 1 311 -1 2221 189 62 77 chr13 5022695 5023154 -96850015 - MLT1A1-int LTR MaLR -1282 453 2 1091 188 139 102 chr13 5023155 5023507 -96849662 - MLT1A1 LTR MaLR 0 365 1 2453 94 0 0 chr13 5024100 5024409 -96848760 - AluSq SINE Alu -4 309 1 456 333 76 54 chr13 5024473 5024653 -96848516 - MER110-int LTR ERV1 -4121 526 351 1628 118 165 4 chr13 5024653 5024908 -96848261 + AluSx SINE Alu 1 296 -16 456 333 76 54 chr13 5024908 5025018 -96848151 - MER110-int LTR ERV1 -4296 351 245 2305 94 0 3 chr13 5025018 5025315 -96847854 - AluSc SINE Alu -13 296 1 456 333 76 54 chr13 5025315 5025431 -96847738 - MER110-int LTR ERV1 -4402 245 110 252 0 0 0 chr13 5026043 5026071 -96847098 + (A)n Simple_repeat Simple_repeat 1 28 0 721 161 8 16 chr13 5026086 5026210 -96846959 - THE1C LTR MaLR -252 123 1 7564 223 77 17 chr13 5026211 5029178 -96843991 + L1ME1 LINE L1 2894 6059 -107 2399 94 0 0 chr13 5029178 5029486 -96843683 - AluSg SINE Alu -2 308 1 7564 223 77 17 chr13 5029486 5029595 -96843574 + L1ME1 LINE L1 6059 6160 -6 246 301 96 19 chr13 5029612 5029768 -96843401 + L1M2 LINE L1 2290 2457 -4392 22 0 0 0 chr13 5029836 5029858 -96843311 + AT_rich Low_complexity Low_complexity 1 22 0 209 286 0 0 chr13 5031075 5031124 -96842045 + (TG)n Simple_repeat Simple_repeat 1 49 0 5589 147 43 11 chr13 5033653 5034130 -96839039 - L1MA5A LINE L1 -1 6296 5836 402 57 0 0 chr13 5034130 5034183 -96838986 + (TG)n Simple_repeat Simple_repeat 2 54 0 5589 147 43 11 chr13 5034183 5034759 -96838410 - L1MA5A LINE L1 -461 5836 5209 1386 172 4 4 chr13 5034744 5035005 -96838164 + L1MA5A LINE L1 4963 5223 -923 * 889 282 179 34 chr13 5035295 5036732 -96836437 + L1ME2 LINE L1 3953 5593 -743 202 255 43 0 chr13 5036758 5036805 -96836364 - L2 LINE L2 -16 3297 3249 310 277 39 31 chr13 5036955 5037085 -96836084 + L1ME2 LINE L1 5758 5888 -276 5704 54 4 16 chr13 5037423 5037780 -96835389 + L1PA7 LINE L1 5472 5819 -335 2414 91 0 0 chr13 5037780 5038087 -96835082 + AluY SINE Alu 1 307 -4 5704 54 4 16 chr13 5038087 5038415 -96834754 + L1PA7 LINE L1 5819 6149 -5 21 0 0 0 chr13 5038415 5038436 -96834733 + AT_rich Low_complexity Low_complexity 1 21 0 509 281 104 58 chr13 5038529 5038656 -96834513 + L1MC4a LINE L1 4027 4147 -1999 1590 189 3 22 chr13 5038656 5038969 -96834200 + AluJo SINE Alu 1 307 -5 509 281 104 58 chr13 5038969 5039446 -96833723 + L1MC4a LINE L1 4147 4659 -1487 247 360 61 19 chr13 5039719 5039933 -96833236 + L1MC4a LINE L1 5376 5598 -523 267 289 30 30 chr13 5040141 5040276 -96832893 + L1MC4a LINE L1 5800 5934 -1874 393 275 119 82 chr13 5040936 5041289 -96831880 - L1M2 LINE L1 -5907 942 577 3698 157 36 22 chr13 5041757 5042445 -96830724 - ERVL-B2 LTR ERVL -1634 4130 3433 6533 155 35 21 chr13 5042452 5043010 -96830159 - ERVL-B2 LTR ERVL -2909 2855 2307 1635 141 131 20 chr13 5043010 5043315 -96829854 + MER44D DNA MER2_type 1 609 0 6533 155 35 21 chr13 5043315 5043862 -96829307 - ERVL-B2 LTR ERVL -3457 2307 1734 856 213 0 0 chr13 5043862 5044012 -96829157 - FRAM SINE Alu -25 151 2 7943 201 68 10 chr13 5044012 5045667 -96827502 - ERVL-B2 LTR ERVL -4013 1751 2 2290 181 138 7 chr13 5045672 5045710 -96827459 - MLT2B2 LTR ERVL -8 507 475 210 91 0 0 chr13 5045710 5045743 -96827426 + (TA)n Simple_repeat Simple_repeat 1 33 0 2290 181 138 7 chr13 5045743 5046152 -96827017 - MLT2B2 LTR ERVL -40 475 1 5484 52 33 13 chr13 5050250 5050319 -96822850 - MER11D LTR ERVK -195 702 636 2897 19 0 0 chr13 5050319 5050636 -96822533 - AluYb8 SINE Alu -1 317 1 5484 52 33 13 chr13 5050636 5051254 -96821915 - MER11D LTR ERVK -261 636 1 1602 195 118 8 chr13 5051263 5051627 -96821542 - MLT2B3 LTR ERVL -147 407 4 248 291 52 87 chr13 5051858 5051973 -96821196 + MIR SINE MIR 74 183 -79 1742 153 7 23 chr13 5051973 5052274 -96820895 - AluSx SINE Alu -16 296 1 248 291 52 87 chr13 5052274 5052330 -96820839 + MIR SINE MIR 183 239 -23 196 204 91 0 chr13 5052296 5052340 -96820829 + L2 LINE L2 3251 3298 -15 * 193 296 143 0 chr13 5052473 5052571 -96820598 + L2 LINE L2 3183 3294 -19 2275 95 7 0 chr13 5053163 5053469 -96819700 - AluY SINE Alu -3 308 1 1329 244 103 44 chr13 5053476 5053930 -96819239 + LTR26E LTR ERV1 123 608 0 232 244 37 73 chr13 5053930 5053973 -96819196 - MER57B LTR ERV1 -83 351 312 1069 134 120 49 chr13 5054089 5054373 -96818796 + L1MA8 LINE L1 5983 6286 -5 265 262 60 0 chr13 5055268 5055352 -96817817 + MIR SINE MIR 81 169 -93 1220 149 45 0 chr13 5056065 5056266 -96816903 + MER2 DNA MER2_type 1 210 -135 297 188 38 75 chr13 5056292 5056372 -96816797 + MER2 DNA MER2_type 268 344 -1 2404 152 52 2 chr13 5056593 5057001 -96816168 + MSTA LTR MaLR 1 428 0 181 0 69 0 chr13 5058063 5058092 -96815077 + (TTTG)n Simple_repeat Simple_repeat 4 34 0 273 231 15 0 chr13 5058139 5058204 -96814965 + MER34 LTR ERV1 25 90 -452 268 280 59 8 chr13 5058230 5058348 -96814821 + LTR48B LTR ERV1 141 264 -380 324 70 0 0 chr13 5058467 5058510 -96814659 + (TA)n Simple_repeat Simple_repeat 1 43 0 2381 55 41 0 chr13 5058948 5059240 -96813929 - AluY SINE Alu -7 304 1 314 291 17 84 chr13 5060042 5060221 -96812948 - L1ME4a LINE L1 -9 6112 5946 238 263 49 29 chr13 5060365 5060570 -96812599 - L1ME4a LINE L1 -304 5817 5609 227 184 0 0 chr13 5060572 5060610 -96812559 - tRNA-Arg-AGA tRNA tRNA -38 38 1 2236 92 3 0 chr13 5061415 5061748 -96811421 + AluSp SINE Alu 1 334 0 2451 56 0 31 chr13 5061758 5062078 -96811091 + AluY SINE Alu 1 310 -1 195 129 0 0 chr13 5062122 5062153 -96811016 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 362 279 10 10 chr13 5062153 5062257 -96810912 + L1M4 LINE L1 548 651 -5891 2257 74 3 10 chr13 5062359 5062658 -96810511 - AluY SINE Alu -14 297 1 2559 219 18 58 chr13 5062660 5063495 -96809674 + L1M4 LINE L1 673 1471 -5071 2055 134 23 0 chr13 5063495 5063794 -96809375 + AluSx SINE Alu 1 306 -6 2559 219 18 58 chr13 5063794 5063855 -96809314 + L1M4 LINE L1 1471 1533 -5009 930 303 32 23 chr13 5063869 5064722 -96808447 + L1M4 LINE L1 1747 2718 -3926 2579 68 0 0 chr13 5064722 5065033 -96808136 + AluY SINE Alu 1 311 0 381 203 16 23 chr13 5065061 5065189 -96807980 + GA-rich Low_complexity Low_complexity 5 131 0 217 267 0 0 chr13 5065356 5065401 -96807768 + MIR SINE MIR 197 241 -21 27 0 0 0 chr13 5065666 5065693 -96807476 + AT_rich Low_complexity Low_complexity 1 27 0 2155 103 0 34 chr13 5065706 5066027 -96807142 - AluSg SINE Alu 0 310 1 1166 177 39 120 chr13 5066675 5067059 -96806110 - MLT1A1 LTR MaLR -12 353 1 200 254 17 17 chr13 5067162 5067221 -96805948 - MIR SINE MIR -6 256 198 2239 113 7 3 chr13 5067411 5067721 -96805448 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr13 5067914 5067944 -96805225 + AT_rich Low_complexity Low_complexity 1 30 0 1314 216 113 30 chr13 5068453 5068879 -96804290 + MLT1C LTR MaLR 7 467 0 262 253 70 70 chr13 5069876 5069942 -96803227 + MIR SINE MIR 6 71 -191 2206 157 49 53 chr13 5069942 5070394 -96802775 - LTR47A LTR ERVL -2 450 1 262 253 70 70 chr13 5070394 5070485 -96802684 + MIR SINE MIR 70 163 -99 326 220 144 3 chr13 5070545 5070660 -96802509 - MER97a DNA MER1_type? -725 169 44 1210 268 65 31 chr13 5071750 5071934 -96801235 - L1M4 LINE L1 -2391 3755 3579 2132 112 20 0 chr13 5071934 5072228 -96800941 + AluSx SINE Alu 1 300 -12 1210 268 65 31 chr13 5072228 5072786 -96800383 - L1M4 LINE L1 -2567 3579 2988 501 317 76 62 chr13 5072845 5072990 -96800179 - L1M4 LINE L1 -3275 2871 2730 1958 138 0 10 chr13 5072990 5073287 -96799882 + AluSx SINE Alu 1 294 -18 501 317 76 62 chr13 5073287 5073642 -96799527 - L1M4 LINE L1 -3416 2730 2364 25 95 0 0 chr13 5073678 5073752 -96799417 + AT_rich Low_complexity Low_complexity 1 74 0 318 204 21 43 chr13 5073897 5073990 -96799179 - L1ME4a LINE L1 -159 5962 5872 477 0 0 0 chr13 5075113 5075166 -96798003 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 399 324 87 18 chr13 5075456 5075675 -96797494 - MIR SINE MIR -16 246 13 1004 205 142 15 chr13 5075720 5076057 -96797112 - LTR25 LTR ERV1 0 794 415 485 131 12 0 chr13 5076284 5076368 -96796801 - MER61E LTR ERV1 -484 85 1 3208 214 33 42 chr13 5077141 5078049 -96795120 - L1M3 LINE L1 -591 5592 4692 2341 107 0 0 chr13 5078049 5078349 -96794820 + AluSg SINE Alu 1 300 -10 3208 214 33 42 chr13 5078349 5078712 -96794457 - L1M3 LINE L1 -1491 4692 4327 2005 140 3 22 chr13 5078903 5079218 -96793951 + AluSc SINE Alu 1 309 0 322 315 48 5 chr13 5079402 5079635 -96793534 - L1ME4a LINE L1 -521 5641 5383 2367 122 49 35 chr13 5079985 5080411 -96792758 - MSTB1 LTR MaLR 0 432 1 22 56 0 0 chr13 5081194 5081230 -96791939 + AT_rich Low_complexity Low_complexity 1 36 0 2370 95 0 7 chr13 5081313 5081619 -96791550 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr13 5082332 5082353 -96790816 + AT_rich Low_complexity Low_complexity 1 21 0 2120 137 116 18 chr13 5082640 5083028 -96790141 - MSTA LTR MaLR -2 426 1 273 196 21 10 chr13 5084307 5084404 -96788765 + (TA)n Simple_repeat Simple_repeat 1 98 0 419 305 62 22 chr13 5084419 5084695 -96788474 + L1MEd LINE L1 1040 1371 -4885 2397 197 112 6 chr13 5084759 5085418 -96787751 - L1MB7 LINE L1 -9 6175 5447 28 0 0 0 chr13 5085471 5085499 -96787670 + AT_rich Low_complexity Low_complexity 1 28 0 2111 134 0 0 chr13 5085660 5085959 -96787210 + AluSx SINE Alu 2 300 -12 184 375 10 10 chr13 5086136 5086232 -96786937 - L2 LINE L2 -1240 2074 1979 715 135 28 17 chr13 5086331 5086509 -96786660 + (TG)n Simple_repeat Simple_repeat 1 180 0 2334 75 3 3 chr13 5087605 5087912 -96785257 - AluY SINE Alu -4 307 1 1024 141 33 38 chr13 5088599 5088812 -96784357 + MSTC LTR MaLR 1 212 -216 182 275 0 0 chr13 5088986 5089026 -96784143 - L2 LINE L2 -20 3252 3213 22 56 0 0 chr13 5089522 5089558 -96783611 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr13 5089744 5089773 -96783396 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr13 5090088 5090134 -96783035 + AT_rich Low_complexity Low_complexity 1 46 0 451 301 117 8 chr13 5090403 5090652 -96782517 + L1MEc LINE L1 47 322 -6074 315 277 19 25 chr13 5090672 5090831 -96782338 + L1MEc LINE L1 362 519 -5877 3157 61 16 0 chr13 5091217 5091641 -96781528 - MER11B LTR ERVK -805 431 1 8809 191 30 8 chr13 5091643 5093649 -96779520 + L1PA15 LINE L1 3054 5149 -1016 2216 114 140 8 chr13 5093649 5094027 -96779142 + MSTA LTR MaLR 1 428 0 8809 191 30 8 chr13 5094027 5095063 -96778106 + L1PA15 LINE L1 5149 6161 -4 1997 182 26 5 chr13 5095059 5095487 -96777682 + L1MC3 LINE L1 5461 5897 -1888 * 915 349 49 55 chr13 5095511 5096929 -96776240 + ERVL LTR ERVL 3915 5323 -441 2306 71 7 14 chr13 5097240 5097534 -96775635 - AluY SINE Alu -15 296 5 657 318 87 7 chr13 5097646 5097932 -96775237 + LTR16A1 LTR ERVL 148 456 -1 3748 93 2 8 chr13 5098245 5098759 -96774410 - MER9 LTR ERVK 0 511 1 2262 53 0 0 chr13 5098759 5099041 -96774128 - HERVK9 LTR ERVK 0 5916 5635 7319 96 4 6 chr13 5099137 5100193 -96772976 - HERVK9 LTR ERVK -282 5634 4581 1712 64 0 9 chr13 5100191 5100424 -96772745 - HERVK9 LTR ERVK -1975 3941 3711 * 10697 60 0 1 chr13 5100424 5101795 -96771374 - HERVK9 LTR ERVK -3130 2786 1417 1912 90 0 14 chr13 5101898 5102187 -96770982 - HERVK9 LTR ERVK -4519 1397 1113 2797 63 7 85 chr13 5102188 5102648 -96770521 - HERVK9 LTR ERVK -5348 568 145 232 356 132 15 chr13 5102906 5103111 -96770058 - L3 LINE CR1 -708 869 641 187 229 0 42 chr13 5103294 5103342 -96769827 + L2 LINE L2 3267 3312 -1 2028 156 56 67 chr13 5103726 5103926 -96769243 + MSTB LTR MaLR 1 202 -224 2358 96 0 3 chr13 5103926 5104227 -96768942 + AluSg SINE Alu 1 300 -10 2028 156 56 67 chr13 5104227 5104457 -96768712 + MSTB LTR MaLR 202 426 0 1141 184 49 0 chr13 5104828 5105072 -96768097 + L1MA9 LINE L1 6019 6274 -38 1834 142 43 13 chr13 5106784 5107086 -96766083 + AluSx SINE Alu 1 311 -1 586 285 109 0 chr13 5107243 5107408 -96765761 + MER5A DNA MER1_type 7 189 0 269 313 50 50 chr13 5107482 5107661 -96765508 + MIR SINE MIR 71 249 -13 205 284 74 0 chr13 5110360 5110441 -96762728 + MIR SINE MIR 116 202 -60 1265 160 9 5 chr13 5110855 5111067 -96762102 - pTR5 LTR ERV1 -2045 393 181 258 314 48 0 chr13 5111069 5111174 -96761995 - LTR30 LTR ERV1 -69 653 544 3994 177 79 38 chr13 5111178 5112145 -96761024 - pTR5 LTR ERV1 -417 2021 740 186 145 0 53 chr13 5115435 5115511 -96757658 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 204 245 0 0 chr13 5116990 5117039 -96756130 + T-rich Low_complexity Low_complexity 1 49 0 217 200 40 0 chr13 5117635 5117685 -96755484 + L2 LINE L2 3221 3272 0 245 301 126 10 chr13 5117868 5117971 -96755198 - L1MC4 LINE L1 -1 8041 7927 372 378 92 22 chr13 5118421 5118789 -96754380 - L1ME LINE L1 -466 5698 5305 631 349 90 30 chr13 5118953 5119179 -96753990 - L1ME LINE L1 -838 5308 5097 2166 120 40 0 chr13 5119179 5119479 -96753690 + AluSx SINE Alu 1 312 0 631 349 90 30 chr13 5119479 5120500 -96752669 - L1ME LINE L1 -1049 5097 3987 1584 191 65 3 chr13 5121112 5121162 -96752007 - L1MC3 LINE L1 -740 7045 7000 1470 100 4 123 chr13 5121162 5121422 -96751747 - AluSc SINE Alu -8 301 73 1584 191 65 3 chr13 5121422 5121712 -96751457 - L1MC3 LINE L1 -785 7000 6684 1386 258 33 0 chr13 5121716 5122135 -96751034 + L1MB8 LINE L1 1046 1478 -4906 690 185 7 34 chr13 5122136 5122282 -96750887 - MER4D LTR ERV1 0 903 762 * 1958 141 141 5 chr13 5122277 5122653 -96750516 + MER9 LTR ERVK 85 511 0 2213 171 29 113 chr13 5122653 5123337 -96749832 - MER4E LTR ERV1 -135 644 18 980 276 39 3 chr13 5123347 5123684 -96749485 + L1MB8 LINE L1 1500 1848 -4536 7230 214 44 31 chr13 5123840 5124716 -96748453 + L1MB8 LINE L1 3325 4188 -2226 2090 144 0 10 chr13 5124716 5125021 -96748148 + AluSg SINE Alu 1 302 -8 7230 214 44 31 chr13 5125021 5127183 -96745986 + L1MB8 LINE L1 4188 6408 -6 452 256 98 47 chr13 5127346 5127643 -96745526 + L1MC/D LINE L1 3682 3993 -2153 558 310 107 47 chr13 5127669 5128117 -96745052 + REP3 LTR ERV 1 475 -87 317 354 149 24 chr13 5128293 5128581 -96744588 + L1MC/D LINE L1 4098 4421 -1725 318 267 13 0 chr13 5128671 5128746 -96744423 + LTR33 LTR ERVL 103 178 -343 413 256 0 0 chr13 5128955 5129045 -96744124 + LTR33A LTR ERVL 434 523 0 313 343 28 14 chr13 5129051 5129194 -96743975 + L1MC/D LINE L1 4474 4618 -1528 326 240 39 45 chr13 5129381 5129560 -96743609 + L1P LINE L1 4886 5063 -1083 2098 117 6 46 chr13 5129715 5130041 -96743128 + AluSq SINE Alu 1 313 0 325 326 60 18 chr13 5130084 5130450 -96742719 + L1MC/D LINE L1 5258 5637 -484 800 248 40 56 chr13 5130450 5130640 -96742529 - MLT1B LTR MaLR 0 390 205 267 31 0 0 chr13 5130640 5130672 -96742497 + (TG)n Simple_repeat Simple_repeat 1 32 0 800 248 40 56 chr13 5130672 5130784 -96742385 - MLT1B LTR MaLR -185 205 93 332 174 0 14 chr13 5131697 5131766 -96741403 - MLT1E1 LTR MaLR -402 252 185 226 219 125 0 chr13 5131782 5131846 -96741323 - MLT1E1 LTR MaLR -573 81 10 1078 264 34 3 chr13 5132721 5133070 -96740099 + MLT1A1 LTR MaLR 4 363 -2 408 254 39 8 chr13 5133085 5133215 -96739954 + MIR SINE MIR 50 183 -79 798 199 28 0 chr13 5134126 5134307 -96738862 + L1MB7 LINE L1 5282 5467 -707 718 209 4 8 chr13 5134310 5134546 -96738623 + GA-rich Low_complexity Low_complexity 1 235 0 1131 98 0 0 chr13 5134561 5134724 -96738445 + (GGAA)n Simple_repeat Simple_repeat 3 165 0 403 179 21 32 chr13 5134892 5134987 -96738182 + L1MB7 LINE L1 5485 5578 -602 801 251 45 31 chr13 5135027 5135314 -96737855 + L1MB7 LINE L1 5819 6109 -75 268 225 0 70 chr13 5135417 5135488 -96737681 + L1MB7 LINE L1 6058 6123 -61 196 229 0 0 chr13 5135518 5135566 -96737603 - MIR SINE MIR -115 147 100 1714 116 88 52 chr13 5139764 5140126 -96733043 - THE1C LTR MaLR 0 375 1 203 254 14 28 chr13 5141553 5141624 -96731545 - L2 LINE L2 -77 3195 3126 252 245 59 10 chr13 5142724 5142826 -96730343 - MLT1D LTR MaLR -135 370 264 1128 178 50 0 chr13 5143476 5143678 -96729491 - MSTB LTR MaLR 0 426 215 1303 182 88 61 chr13 5143692 5143825 -96729344 + MER66B LTR ERV1 115 243 -243 2014 129 0 62 chr13 5143825 5144134 -96729035 + AluSx SINE Alu 5 294 -18 1303 182 88 61 chr13 5144134 5144362 -96728807 + MER66B LTR ERV1 243 486 0 734 223 0 0 chr13 5144446 5144585 -96728584 + AluJb SINE Alu 137 275 -37 255 313 22 37 chr13 5144605 5144739 -96728430 + L1MC4 LINE L1 7693 7824 -218 361 242 50 42 chr13 5144746 5144866 -96728303 + L1MC4 LINE L1 7922 8042 0 231 321 107 5 chr13 5145157 5145344 -96727825 + HAL1b LINE L1 883 1088 -260 6147 219 46 13 chr13 5146012 5146589 -96726580 - L1MC3 LINE L1 0 7785 7229 2268 150 34 29 chr13 5146589 5147035 -96726134 + MER83 LTR ERV1 1 448 0 6147 219 46 13 chr13 5147035 5147970 -96725199 - L1MC3 LINE L1 -556 7229 6223 180 0 0 0 chr13 5148120 5148140 -96725029 + (CACAA)n Simple_repeat Simple_repeat 3 22 0 391 99 10 59 chr13 5149017 5149118 -96724051 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 872 117 5 126 chr13 5149224 5149401 -96723768 - MER53 DNA DNA 0 189 41 2122 126 0 0 chr13 5149401 5149687 -96723482 - AluSq SINE Alu -27 286 1 872 117 5 126 chr13 5149687 5149723 -96723446 - MER53 DNA DNA -148 41 2 1373 171 52 42 chr13 5149890 5150040 -96723129 + MLT1A2 LTR MaLR 6 153 -221 225 0 0 0 chr13 5150040 5150065 -96723104 + (TC)n Simple_repeat Simple_repeat 1 25 0 1373 171 52 42 chr13 5150065 5150224 -96722945 + MLT1A2 LTR MaLR 153 318 -56 196 269 90 0 chr13 5150394 5150461 -96722708 + MIR SINE MIR 65 137 -71 270 0 0 0 chr13 5150639 5150669 -96722500 + (CA)n Simple_repeat Simple_repeat 2 31 0 262 277 9 18 chr13 5351871 5351983 -96521186 + GA-rich Low_complexity Low_complexity 2 112 0 499 137 0 0 chr13 5352252 5352325 -96520844 - AluSx SINE Alu -16 296 224 1435 144 14 0 chr13 5352405 5352620 -96520549 - AluSx SINE Alu -94 218 1 28 48 0 0 chr13 5352627 5352669 -96520500 + AT_rich Low_complexity Low_complexity 1 42 0 229 361 14 0 chr13 5352924 5352996 -96520173 + MIR SINE MIR 39 111 -97 2144 117 0 32 chr13 5354137 5354453 -96518716 - AluSx SINE Alu -6 306 1 362 333 74 0 chr13 5354644 5354779 -96518390 + MIR SINE MIR 21 165 -97 187 259 103 0 chr13 5354873 5354931 -96518238 + MIR SINE MIR 187 250 -12 2729 36 0 0 chr13 5355414 5355723 -96517446 + AluY SINE Alu 1 309 -2 518 316 111 21 chr13 5356293 5356854 -96516315 - L2 LINE L2 -54 3259 2636 304 314 98 20 chr13 5356941 5357043 -96516126 - L2 LINE L2 -20 3252 3143 192 40 0 0 chr13 5358079 5358104 -96515065 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 59 0 0 chr13 5358127 5358161 -96515008 + (TG)n Simple_repeat Simple_repeat 2 35 0 339 314 63 22 chr13 5358251 5358566 -96514603 + L1M4 LINE L1 2785 3112 -3034 746 276 71 4 chr13 5358585 5358810 -96514359 + MIR SINE MIR 20 259 -3 192 77 0 0 chr13 5358849 5358875 -96514294 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 2087 65 4 11 chr13 5358877 5359140 -96514029 - AluY SINE Alu -17 294 34 1906 114 4 0 chr13 5359278 5359541 -96513628 - AluY SINE Alu -47 264 1 664 271 77 28 chr13 5359587 5359912 -96513257 + L1M4 LINE L1 4634 4974 -1172 644 298 53 26 chr13 5359912 5360140 -96513029 - L2 LINE L2 -1385 1929 1696 306 277 53 0 chr13 5360183 5360277 -96512892 - L2 LINE L2 -1605 1709 1611 963 286 121 54 chr13 5360277 5360682 -96512487 - L2 LINE L2 -2636 678 247 212 294 0 0 chr13 5360692 5360743 -96512426 - L2 LINE L2 -3186 128 78 689 307 79 36 chr13 5361223 5361640 -96511529 - MLT1J2 LTR MaLR -15 435 1 2268 68 57 0 chr13 5361820 5362100 -96511069 + AluY SINE Alu 1 296 -15 3709 145 29 19 chr13 5362297 5362912 -96510257 - L1PA15 LINE L1 -1 6164 5544 21 71 0 0 chr13 5363055 5363097 -96510072 + AT_rich Low_complexity Low_complexity 1 42 0 1294 260 94 2 chr13 5363151 5363651 -96509518 + MER114 LTR ERV 20 565 -83 223 221 143 13 chr13 5363679 5363756 -96509413 - MIR SINE MIR -98 164 78 422 101 101 0 chr13 5363828 5363897 -96509272 - LTR12 LTR ERV1 -288 426 351 267 155 14 99 chr13 5363899 5363970 -96509199 - LTR30 LTR ERV1 -108 614 550 1150 116 233 5 chr13 5363970 5364185 -96508984 - LTR12 LTR ERV1 -450 264 1 227 319 44 44 chr13 5364709 5364822 -96508347 - MIR SINE MIR -66 142 30 2225 148 43 6 chr13 5365274 5365626 -96507543 - MLT1A1 LTR MaLR 0 365 1 1463 114 18 35 chr13 5365985 5366212 -96506957 - AluSg/x SINE Alu -11 299 77 2217 241 90 29 chr13 5367207 5367382 -96505787 - L1ME2 LINE L1 -16 6148 5985 2178 113 13 0 chr13 5367382 5367683 -96505486 - AluSq SINE Alu -8 305 1 2217 241 90 29 chr13 5367683 5368338 -96504831 - L1ME2 LINE L1 -179 5985 5254 694 138 69 15 chr13 5368351 5368481 -96504688 - MLT1D LTR MaLR 0 505 369 2245 114 3 0 chr13 5368492 5368798 -96504371 - AluSx SINE Alu -5 307 1 339 189 53 11 chr13 5368807 5368902 -96504267 - L1ME2 LINE L1 -981 5165 5067 * 1738 261 82 8 chr13 5368877 5369592 -96503577 - L1ME2 LINE L1 -3128 3018 2251 2240 75 0 3 chr13 5369877 5370212 -96502957 - AluY SINE Alu 0 334 1 2275 57 54 3 chr13 5370725 5371021 -96502148 + AluY SINE Alu 1 311 0 2478 90 0 0 chr13 5371289 5371590 -96501579 + AluSq SINE Alu 1 301 -12 225 302 0 23 chr13 5373180 5373266 -96499903 - L1MC/D LINE L1 -1876 5932 5849 2156 133 0 0 chr13 5373291 5373592 -96499577 - AluSx SINE Alu -11 301 1 922 190 42 28 chr13 5373629 5373845 -96499324 - MER20 DNA MER1_type 0 219 1 1217 247 105 32 chr13 5373953 5374580 -96498589 - Charlie2a DNA MER1_type -1174 1688 1016 236 376 38 55 chr13 5374620 5374808 -96498361 - L2 LINE L2 -445 2869 2686 2627 33 0 3 chr13 5374808 5375107 -96498062 + AluY SINE Alu 1 298 -13 236 376 38 55 chr13 5375107 5375208 -96497961 - L2 LINE L2 -628 2686 2585 288 308 107 37 chr13 5375212 5375511 -96497658 - L2 LINE L2 -1001 2313 1994 4055 122 30 38 chr13 5375525 5375819 -96497350 + MER39B LTR ERV1 1 296 -357 2301 73 0 23 chr13 5375819 5376120 -96497049 + AluY SINE Alu 1 294 -17 4055 122 30 38 chr13 5376120 5376483 -96496686 + MER39B LTR ERV1 296 653 0 2399 80 0 10 chr13 5376628 5376942 -96496227 - AluY SINE Alu 0 311 1 317 211 144 39 chr13 5377712 5377816 -96495353 - MIR3 SINE MIR -31 177 63 535 199 199 50 chr13 5378389 5378610 -96494559 - MIR SINE MIR -5 257 4 224 310 129 9 chr13 5379099 5379215 -96493954 - L2 LINE L2 -1364 1950 1821 2175 126 0 3 chr13 5379773 5380066 -96493103 - AluSx SINE Alu -20 292 1 2211 101 0 10 chr13 5380862 5381160 -96492009 - AluSx SINE Alu -17 295 1 2267 103 0 3 chr13 5381533 5381833 -96491336 - AluSx SINE Alu -13 299 1 267 208 28 14 chr13 5381874 5381946 -96491223 - MIR SINE MIR -109 153 81 297 313 46 23 chr13 5382033 5382164 -96491005 + L2 LINE L2 1459 1592 -1722 335 328 62 6 chr13 5382172 5382349 -96490820 + L2 LINE L2 1791 1977 -1337 2231 129 35 30 chr13 5382404 5382776 -96490393 + THE1C LTR MaLR 2 375 0 240 111 0 0 chr13 5383011 5383047 -96490122 + (A)n Simple_repeat Simple_repeat 1 36 0 2640 42 3 3 chr13 5384025 5384336 -96488833 - AluY SINE Alu 0 311 1 2275 60 3 3 chr13 5384966 5385271 -96487898 + AluY SINE Alu 1 305 0 1091 220 26 111 chr13 5385763 5386149 -96487020 + MLT1A1 LTR MaLR 13 365 0 1259 271 46 51 chr13 5386193 5386642 -96486527 - L2 LINE L2 -81 3232 2789 1696 154 3 74 chr13 5386642 5386966 -96486203 + AluJo SINE Alu 3 303 -9 1259 271 46 51 chr13 5386966 5387328 -96485841 - L2 LINE L2 -524 2789 2427 337 299 76 7 chr13 5389313 5389457 -96483712 + L2 LINE L2 3099 3252 -61 2114 88 53 3 chr13 5389902 5390185 -96482984 + AluY SINE Alu 1 297 -14 2087 138 16 0 chr13 5390305 5390610 -96482559 + AluSg SINE Alu 1 310 0 2248 97 7 10 chr13 5393554 5393863 -96479306 - AluSc SINE Alu 0 309 2 2325 101 0 0 chr13 5393864 5394161 -96479008 - AluSq SINE Alu -16 297 1 2166 130 3 0 chr13 5394169 5394469 -96478700 - AluSx SINE Alu -11 301 1 2105 130 10 0 chr13 5394477 5394777 -96478392 - AluSx SINE Alu -9 303 1 204 67 0 0 chr13 5394942 5394972 -96478197 + (CA)n Simple_repeat Simple_repeat 2 31 0 326 329 123 58 chr13 5395253 5395578 -96477591 - L2 LINE L2 -6 3266 2921 182 189 108 68 chr13 5395785 5395859 -96477310 - L2 LINE L2 -562 2752 2676 28 0 0 0 chr13 5396453 5396481 -96476688 + AT_rich Low_complexity Low_complexity 1 28 0 306 209 20 37 chr13 5396971 5397056 -96476113 - MIR SINE MIR -87 121 34 1648 142 53 114 chr13 5398318 5398749 -96474420 + LTR12 LTR ERV1 1 405 -309 424 211 100 11 chr13 5398751 5398841 -96474328 + LTR12 LTR ERV1 615 712 -2 191 358 117 8 chr13 5399264 5399384 -96473785 + MIR SINE MIR 16 148 -60 2574 99 14 0 chr13 5400707 5401051 -96472118 - L1PB1 LINE L1 -2 6149 5801 23 33 0 0 chr13 5401139 5401169 -96472000 + AT_rich Low_complexity Low_complexity 1 30 0 2448 57 0 7 chr13 5401710 5402007 -96471162 + AluY SINE Alu 1 295 -16 255 219 154 73 chr13 5402140 5402263 -96470906 - L2 LINE L2 -3 3269 3137 2464 226 86 42 chr13 5402289 5402984 -96470185 + MER21B LTR ERV1 1 726 -137 2449 88 0 3 chr13 5402988 5403294 -96469875 + AluSp SINE Alu 1 305 -8 228 182 23 0 chr13 5403658 5403702 -96469467 + L2 LINE L2 3268 3312 -1 22 35 0 0 chr13 5403894 5403923 -96469246 + AT_rich Low_complexity Low_complexity 1 29 0 2457 81 0 3 chr13 5403938 5404245 -96468924 + AluSc SINE Alu 1 306 -3 213 211 14 28 chr13 5405092 5405163 -96468006 + (TA)n Simple_repeat Simple_repeat 1 70 0 331 289 252 7 chr13 5405799 5405978 -96467191 - MIR SINE MIR -6 256 37 1818 285 160 28 chr13 5406132 5407063 -96466106 + L2 LINE L2 1671 2724 -590 1391 209 37 42 chr13 5407087 5407464 -96465705 - MLT1B LTR MaLR -11 379 5 558 286 161 43 chr13 5407474 5407937 -96465232 + L2 LINE L2 2743 3264 -49 181 242 0 0 chr13 5408295 5408328 -96464841 - L2 LINE L2 -16 3297 3265 258 264 14 114 chr13 5408789 5408929 -96464240 + MIR SINE MIR 119 244 -18 532 283 139 24 chr13 5408962 5409372 -96463797 - L1ME LINE L1 -368 5794 5338 307 255 100 32 chr13 5409372 5409538 -96463631 - MLT1H1 LTR MaLR -371 178 1 27 73 0 0 chr13 5409624 5409679 -96463490 + AT_rich Low_complexity Low_complexity 1 55 0 329 315 36 26 chr13 5409703 5410005 -96463164 - L1ME LINE L1 -946 5200 4896 828 217 79 21 chr13 5410302 5411587 -96461582 + L1ME2 LINE L1 4616 6109 -55 194 309 75 21 chr13 5411761 5411855 -96461314 + MIR SINE MIR 55 153 -109 235 293 54 34 chr13 5412192 5412397 -96460772 + HAL1 LINE L1 1550 1758 -749 2053 52 48 0 chr13 5412802 5413051 -96460118 - AluYa5 SINE Alu -49 262 2 311 0 0 25 chr13 5413056 5413096 -96460073 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 322 297 154 67 chr13 5413122 5413913 -96459256 + L1M4 LINE L1 2243 3102 -3044 207 0 0 0 chr13 5413991 5414014 -96459155 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2271 75 37 3 chr13 5414032 5414327 -96458842 - AluY SINE Alu -6 305 1 2170 79 58 0 chr13 5414550 5414841 -96458328 - AluY SINE Alu -3 308 1 1073 76 0 0 chr13 5414844 5414976 -96458193 - AluY SINE Alu -179 132 1 2052 180 49 14 chr13 5415594 5416039 -96457130 + LOR1b LTR ERV1 1 461 0 697 139 0 36 chr13 5416358 5416495 -96456674 - FLAM_C SINE Alu 0 143 12 2094 130 0 0 chr13 5416815 5417107 -96456062 + AluSg SINE Alu 1 292 -18 189 267 159 80 chr13 5417598 5417774 -96455395 - MIR3 SINE MIR -15 193 4 6984 133 91 93 chr13 5418053 5419754 -96453415 + pTR5 LTR ERV1 743 2438 0 227 73 49 0 chr13 5421871 5421912 -96451257 + (ATTAG)n Simple_repeat Simple_repeat 4 46 0 2243 86 0 17 chr13 5421963 5422265 -96450904 + AluY SINE Alu 1 297 -14 256 269 15 0 chr13 5422371 5422438 -96450731 - L2 LINE L2 -262 3010 2943 2240 104 7 3 chr13 5422515 5422814 -96450355 + AluSq SINE Alu 1 300 -13 819 206 47 51 chr13 5423484 5423737 -96449432 + MLT1A1 LTR MaLR 112 363 -2 610 264 139 88 chr13 5423810 5424307 -96448862 + L1ME3A LINE L1 5619 6140 -30 24 77 0 0 chr13 5424479 5424531 -96448638 + AT_rich Low_complexity Low_complexity 1 52 0 303 239 11 22 chr13 5425261 5425353 -96447816 + C-rich Low_complexity Low_complexity 6 96 0 212 189 0 0 chr13 5426538 5426575 -96446594 + A-rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr13 5426849 5426871 -96446298 + AT_rich Low_complexity Low_complexity 1 22 0 2187 101 11 0 chr13 5428260 5428547 -96444622 - AluSg SINE Alu -20 290 1 2279 80 3 0 chr13 5428994 5429282 -96443887 - AluY SINE Alu -4 307 19 368 266 85 53 chr13 5429292 5429611 -96443558 - L1ME4a LINE L1 -245 5876 5548 1460 77 15 5 chr13 5429625 5429820 -96443349 + AluY SINE Alu 1 197 -114 2686 150 65 7 chr13 5429921 5430567 -96442602 - L1MC/D LINE L1 -425 5817 5147 2349 90 3 3 chr13 5430665 5430977 -96442192 - AluSp SINE Alu -1 312 1 366 260 65 88 chr13 5431061 5431169 -96442000 - HAL1b LINE L1 -239 1109 1000 2277 84 3 13 chr13 5431169 5431478 -96441691 - AluY SINE Alu -5 306 1 366 260 65 88 chr13 5431478 5431753 -96441416 - HAL1b LINE L1 -348 1000 735 207 0 0 0 chr13 5432072 5432095 -96441074 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2186 74 0 18 chr13 5432095 5432380 -96440789 - AluSx SINE Alu -32 280 1 1724 130 3 34 chr13 5432823 5433115 -96440054 + AluSx SINE Alu 3 285 -27 492 62 0 0 chr13 5433115 5433179 -96439990 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 2525 53 3 0 chr13 5433632 5433936 -96439233 + AluY SINE Alu 1 305 -6 281 326 112 23 chr13 5433957 5434900 -96438269 - L1M4 LINE L1 -2155 3991 2965 493 111 89 0 chr13 5434917 5435007 -96438162 + MER4A LTR ERV1 1 98 -566 1706 113 11 82 chr13 5435007 5435379 -96437790 + MER4A LTR ERV1 261 664 0 806 301 98 48 chr13 5435383 5435898 -96437271 - L1M4 LINE L1 -3200 2946 2385 2205 110 3 0 chr13 5435898 5436188 -96436981 + AluSq SINE Alu 2 292 -21 806 301 98 48 chr13 5436188 5436379 -96436790 - L1M4 LINE L1 -3761 2385 2205 25 51 0 0 chr13 5437933 5437972 -96435197 + AT_rich Low_complexity Low_complexity 1 39 0 4740 73 46 0 chr13 5438270 5438901 -96434268 - PABL_A LTR ERV1 0 660 1 602 186 0 8 chr13 5438914 5439032 -96434137 - L1P4 LINE L1 -402 5764 5648 * 7769 222 43 21 chr13 5439021 5440522 -96432647 - L1 LINE L1 -836 5546 4079 2340 89 0 13 chr13 5440522 5440825 -96432344 + AluY SINE Alu 1 299 -12 7769 222 43 21 chr13 5440825 5440981 -96432188 - L1 LINE L1 -2303 4079 3928 2153 106 0 3 chr13 5440981 5441289 -96431880 + AluSq SINE Alu 1 307 0 7769 222 43 21 chr13 5441289 5441931 -96431238 - L1 LINE L1 -2454 3928 3191 2063 178 70 5 chr13 5441931 5442329 -96430840 - MSTB LTR MaLR -2 424 1 7769 222 43 21 chr13 5442329 5442370 -96430799 - L1 LINE L1 -3191 3191 3152 2311 87 3 7 chr13 5442380 5442689 -96430480 - AluY SINE Alu -3 308 1 284 393 33 7 chr13 5442691 5442841 -96430328 - MIR SINE MIR -49 213 60 1941 154 106 23 chr13 5443150 5443545 -96429624 + MSTA LTR MaLR 1 428 0 2038 147 76 45 chr13 5443853 5444274 -96428895 + Tigger2a DNA MER2_type 1 434 0 1505 223 0 3 chr13 5444925 5445207 -96427962 + AluJo SINE Alu 1 281 -31 225 0 0 0 chr13 5445212 5445237 -96427932 + (T)n Simple_repeat Simple_repeat 1 25 0 643 197 74 18 chr13 5445258 5445462 -96427707 - L1 LINE L1 -3855 2527 2312 573 211 0 49 chr13 5445469 5445611 -96427558 - FAM SINE Alu -2 47 1 7294 215 57 31 chr13 5445624 5445882 -96427287 + L1M3 LINE L1 3001 3251 -2932 2213 101 3 0 chr13 5445882 5446170 -96426999 + AluY SINE Alu 13 301 -10 7294 215 57 31 chr13 5446170 5447517 -96425652 + L1M3 LINE L1 3251 4709 -1474 2341 107 0 0 chr13 5447517 5447817 -96425352 - AluSg SINE Alu -10 300 1 7294 215 57 31 chr13 5447817 5448725 -96424444 + L1M3 LINE L1 4709 5592 -591 485 131 12 0 chr13 5449495 5449579 -96423590 + MER61E LTR ERV1 1 85 -484 1019 204 139 15 chr13 5449806 5450144 -96423025 + LTR25 LTR ERV1 415 794 0 399 324 87 18 chr13 5450189 5450408 -96422761 + MIR SINE MIR 13 246 -16 432 0 0 0 chr13 5450698 5450746 -96422423 + (TTTTA)n Simple_repeat Simple_repeat 3 50 0 318 204 21 43 chr13 5451869 5451962 -96421207 + L1ME4a LINE L1 5872 5962 -159 25 95 0 0 chr13 5452107 5452181 -96420988 + AT_rich Low_complexity Low_complexity 1 74 0 549 311 76 62 chr13 5452217 5452572 -96420597 + L1M4 LINE L1 2364 2730 -3416 1958 138 0 10 chr13 5452572 5452869 -96420300 - AluSx SINE Alu -18 294 1 549 311 76 62 chr13 5452869 5453014 -96420155 + L1M4 LINE L1 2730 2871 -3275 843 256 78 20 chr13 5453073 5453561 -96419608 + L1M4 LINE L1 2988 3503 -2643 347 133 0 0 chr13 5453809 5453869 -96419300 + Alu SINE Alu 243 302 0 2492 62 0 7 chr13 5453913 5454220 -96418949 - AluY SINE Alu -6 305 1 2536 77 3 0 chr13 5454447 5454757 -96418412 - AluSx SINE Alu -1 311 1 2373 86 0 0 chr13 5455725 5456026 -96417143 + AluY SINE Alu 1 301 -10 2110 111 17 0 chr13 5456038 5456335 -96416834 + AluSx SINE Alu 11 312 0 23 0 0 0 chr13 5456366 5456389 -96416780 + AT_rich Low_complexity Low_complexity 1 23 0 984 115 0 7 chr13 5456433 5456581 -96416588 - AluY SINE Alu -4 307 161 1827 201 63 53 chr13 5456581 5457164 -96416005 + pTR5 LTR ERV1 744 1332 -1106 4049 150 65 5 chr13 5457208 5457853 -96415316 + LTR12 LTR ERV1 5 688 0 1063 138 25 0 chr13 5457854 5458014 -96415155 - AluY SINE Alu -147 164 1 1537 116 30 67 chr13 5458210 5458478 -96414691 - AluY SINE Alu -13 298 41 2241 79 3 14 chr13 5460053 5460379 -96412790 - AluSq SINE Alu 0 323 1 346 274 56 111 chr13 5461121 5461355 -96411814 + MLT1I LTR MaLR 68 288 -121 3491 111 108 89 chr13 5462013 5462776 -96410393 - LTR1 LTR ERV1 -8 777 1 382 281 50 91 chr13 5463025 5463163 -96410006 - MIR SINE MIR -25 237 112 2082 94 28 3 chr13 5463163 5463451 -96409718 + AluSp SINE Alu 3 297 -16 382 281 50 91 chr13 5463451 5463554 -96409615 - MIR SINE MIR -150 112 6 582 184 21 35 chr13 5464304 5464445 -96408724 - L1MB8 LINE L1 -1 6879 6741 2691 214 84 8 chr13 5464448 5465623 -96407546 - L1MB8 LINE L1 -238 6648 5328 3920 159 16 15 chr13 5465641 5466325 -96406844 - L1MA6 LINE L1 -1 6299 5615 2927 86 11 11 chr13 5466327 5466700 -96406469 - THE1C LTR MaLR -2 373 1 329 150 0 0 chr13 5466703 5466763 -96406406 - L1P LINE L1 -728 5428 5369 461 219 42 8 chr13 5466767 5466886 -96406283 - L1MB8 LINE L1 -3552 3296 3174 2851 230 34 77 chr13 5466896 5467193 -96405976 - L1M4 LINE L1 -2093 4864 4556 734 101 10 0 chr13 5467193 5467292 -96405877 - HY3 scRNA scRNA -1 100 1 2851 230 34 77 chr13 5467292 5468194 -96404975 - L1M4 LINE L1 -2401 4556 3716 356 0 23 0 chr13 5468345 5468389 -96404780 + (TG)n Simple_repeat Simple_repeat 2 46 0 4930 240 59 43 chr13 5468477 5469925 -96403244 - L1M4 LINE L1 -5304 1555 84 5628 147 24 10 chr13 5469943 5470019 -96403150 + L1PB3 LINE L1 4755 4828 -1326 2055 87 42 3 chr13 5470019 5470307 -96402862 + AluY SINE Alu 1 299 -12 5628 147 24 10 chr13 5470307 5470787 -96402382 + L1PB3 LINE L1 4828 5300 -854 2471 53 0 3 chr13 5470787 5471087 -96402082 + AluY SINE Alu 1 299 -12 5628 147 24 10 chr13 5471087 5471878 -96401291 + L1PB3 LINE L1 5300 6115 -39 1074 40 0 0 chr13 5471903 5472029 -96401140 + AluY SINE Alu 177 302 -9 284 276 13 26 chr13 5472095 5472171 -96400998 - L1M4 LINE L1 -6770 89 15 836 150 0 0 chr13 5472174 5472307 -96400862 - AluSg/x SINE Alu -3 309 177 336 176 96 128 chr13 5472316 5472503 -96400666 + Charlie7 DNA MER1_type 2426 2606 -6 1585 173 114 82 chr13 5473369 5473832 -96399337 + LTR12 LTR ERV1 1 478 -236 415 280 147 63 chr13 5474792 5475235 -96397934 - L1MB8 LINE L1 -5899 950 471 2151 57 0 47 chr13 5476938 5477238 -96395931 + AluY SINE Alu 1 286 -25 1418 117 5 0 chr13 5477240 5477482 -96395687 + AluSg/x SINE Alu 85 327 0 191 168 42 0 chr13 5479026 5479080 -96394089 - MIR SINE MIR -62 146 88 1222 143 38 5 chr13 5479097 5479307 -96393862 - MSTB1 LTR MaLR -24 408 192 224 257 0 57 chr13 5479531 5479636 -96393533 + CT-rich Low_complexity Low_complexity 6 104 0 2213 104 0 7 chr13 5480133 5480432 -96392737 - AluSx SINE Alu -15 297 1 1538 239 43 5 chr13 5480434 5480831 -96392338 - L1M4 LINE L1 -1780 4366 3955 207 0 0 0 chr13 5480831 5480854 -96392315 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1903 82 0 0 chr13 5480866 5481099 -96392070 - AluSc SINE Alu -76 233 1 999 225 10 0 chr13 5481099 5481299 -96391870 - L1MCa LINE L1 -6206 220 19 7115 91 27 21 chr13 5481385 5482337 -96390832 - L1MA2 LINE L1 -8 6296 5332 2049 141 0 16 chr13 5482337 5482642 -96390527 - AluSx SINE Alu -12 300 1 7115 91 27 21 chr13 5482642 5482828 -96390341 - L1MA2 LINE L1 -972 5332 5148 365 309 73 61 chr13 5482831 5483077 -96390092 + L2 LINE L2 3037 3285 -28 546 179 83 36 chr13 5483434 5483602 -96389567 + MER104 DNA MER2_type 2 177 -3 36 0 0 0 chr13 5483642 5483678 -96389491 + AT_rich Low_complexity Low_complexity 1 36 0 2223 77 4 0 chr13 5484005 5484278 -96388891 + AluSc SINE Alu 1 274 -35 219 36 0 0 chr13 5484279 5484307 -96388862 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 408 40 0 0 chr13 5484306 5484356 -96388813 + (CA)n Simple_repeat Simple_repeat 1 50 0 462 269 101 71 chr13 5484392 5484795 -96388374 - MLT1K LTR MaLR 0 588 146 206 353 104 6 chr13 5485860 5486033 -96387136 - MIR SINE MIR -53 209 20 2286 159 3 9 chr13 5486179 5486518 -96386651 - MER1B DNA MER1_type 0 337 1 24 103 0 0 chr13 5486969 5487056 -96386113 + AT_rich Low_complexity Low_complexity 1 87 0 655 298 41 17 chr13 5488516 5488808 -96384361 + HAL1 LINE L1 1486 1784 -723 1700 193 18 2 chr13 5490995 5491465 -96381704 - L1 LINE L1 -3650 3198 2719 3783 146 26 38 chr13 5491465 5492128 -96381041 + L1MA6 LINE L1 5632 6286 -14 2289 103 0 23 chr13 5492174 5492484 -96380685 - AluSx SINE Alu -9 303 1 205 235 20 0 chr13 5493725 5493776 -96379393 + MIR3 SINE MIR 149 200 -8 1339 171 0 9 chr13 5494475 5494697 -96378472 - L1PA15 LINE L1 -2 6163 5944 22 0 0 0 chr13 5494804 5494826 -96378343 + AT_rich Low_complexity Low_complexity 1 22 0 182 79 0 53 chr13 5495357 5495395 -96377774 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr13 5495781 5495803 -96377366 + AT_rich Low_complexity Low_complexity 1 22 0 343 280 87 40 chr13 5497699 5497849 -96375320 + MIR SINE MIR 80 236 -26 2340 94 3 0 chr13 5498273 5498571 -96374598 - AluSg SINE Alu -11 299 1 21 0 0 0 chr13 5498891 5498912 -96374257 + AT_rich Low_complexity Low_complexity 1 21 0 549 247 52 0 chr13 5499321 5499475 -96373694 + LTR16A1 LTR ERVL 296 457 0 1248 137 197 9 chr13 5499476 5499790 -96373379 - MER65A LTR ERV1 0 445 1 1919 121 0 0 chr13 5499839 5500095 -96373074 - AluSc SINE Alu -53 256 1 293 293 30 86 chr13 5500607 5500805 -96372364 - ERVL LTR ERVL -364 5400 5214 1182 328 96 17 chr13 5501290 5502114 -96371055 - ERVL LTR ERVL -1112 4652 3764 960 275 95 34 chr13 5502309 5502918 -96370251 - ERVL LTR ERVL -2190 3464 2782 1852 134 39 20 chr13 5502918 5503224 -96369945 - AluSx SINE Alu 0 312 1 960 275 95 34 chr13 5503224 5503343 -96369826 - ERVL LTR ERVL -2872 2782 2672 534 276 138 16 chr13 5503424 5503670 -96369499 - ERVL LTR ERVL -3102 2552 2277 269 263 20 50 chr13 5503698 5503797 -96369372 - ERVL LTR ERVL -3526 2238 2143 1956 116 4 0 chr13 5503814 5504081 -96369088 - AluSx SINE Alu -44 268 1 23 33 0 0 chr13 5504643 5504673 -96368496 + AT_rich Low_complexity Low_complexity 1 30 0 2346 49 35 0 chr13 5506509 5506797 -96366372 + AluY SINE Alu 1 298 -13 341 43 21 0 chr13 5506960 5507007 -96366162 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 2214 85 0 7 chr13 5507020 5507301 -96365868 - AluSq SINE Alu -34 279 1 1095 298 155 40 chr13 5507451 5508718 -96364451 - L2 LINE L2 -5 3308 1892 539 349 94 14 chr13 5508936 5509351 -96363818 - MLT1K LTR MaLR 0 588 141 316 312 98 39 chr13 5510681 5511271 -96361898 - L1ME4a LINE L1 -239 5882 5258 225 233 0 0 chr13 5511803 5511846 -96361323 - L2 LINE L2 0 3272 3230 463 259 79 44 chr13 5512208 5512436 -96360733 + L1MEd LINE L1 973 1208 -4911 2289 104 0 3 chr13 5513171 5513470 -96359699 + AluSg SINE Alu 1 298 -12 2126 70 0 0 chr13 5513470 5513729 -96359440 + AluY SINE Alu 38 296 -15 2156 98 3 3 chr13 5514747 5515056 -96358113 + AluSx SINE Alu 1 309 0 855 305 88 19 chr13 5515088 5515761 -96357408 - L2 LINE L2 -5 3308 2590 979 195 92 21 chr13 5515897 5516324 -96356845 + MLT1D LTR MaLR 3 500 -5 878 318 151 14 chr13 5516585 5517159 -96356010 - L2 LINE L2 -223 3049 2386 2375 97 0 0 chr13 5517557 5517865 -96355304 - AluY SINE Alu -3 308 1 26 50 0 0 chr13 5518136 5518176 -96354993 + AT_rich Low_complexity Low_complexity 1 40 0 729 97 0 0 chr13 5519187 5519403 -96353766 - AluSg/x SINE Alu 0 423 208 21 89 0 0 chr13 5519680 5519736 -96353433 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr13 5520751 5520775 -96352394 + AT_rich Low_complexity Low_complexity 1 24 0 2578 157 34 16 chr13 5520776 5521278 -96351891 - L1MB1 LINE L1 -13 6155 5645 5192 170 20 3 chr13 5521278 5522580 -96350589 + L1MB1 LINE L1 4344 5667 -501 822 139 44 0 chr13 5524273 5524410 -96348759 + Tigger5 DNA MER2_type 2115 2257 -66 231 169 0 99 chr13 5524449 5524520 -96348649 + MLT1E1 LTR MaLR 591 654 0 2397 81 0 0 chr13 5525016 5525314 -96347855 + AluY SINE Alu 1 298 -13 296 309 68 60 chr13 5526330 5526465 -96346704 + L2 LINE L2 2878 3010 -303 2423 130 47 5 chr13 5526465 5526873 -96346296 + MSTA LTR MaLR 4 428 0 296 309 68 60 chr13 5526873 5527002 -96346167 + L2 LINE L2 3010 3144 -169 1895 142 3 26 chr13 5527803 5528105 -96345064 + AluSx SINE Alu 5 299 -13 2428 155 67 0 chr13 5528588 5529020 -96344149 + LOR1b LTR ERV1 1 461 0 186 171 0 0 chr13 5531587 5531628 -96341541 + (ATG)n Simple_repeat Simple_repeat 2 42 0 337 257 50 0 chr13 5532039 5532140 -96341029 - U6 snRNA snRNA 0 107 2 207 383 43 11 chr13 5532348 5532442 -96340727 - MIR SINE MIR -137 125 29 301 344 38 6 chr13 5532511 5532671 -96340498 + L1M4 LINE L1 3983 4147 -1999 23 54 0 0 chr13 5533144 5533181 -96339988 + AT_rich Low_complexity Low_complexity 1 37 0 1609 110 17 8 chr13 5533532 5533802 -96339367 + AluSp SINE Alu 46 317 0 191 191 119 0 chr13 5534761 5534803 -96338366 - L2 LINE L2 -9 3263 3217 246 296 14 0 chr13 5534834 5534905 -96338264 - L2 LINE L2 0 3272 3201 193 344 56 16 chr13 5535158 5535283 -96337886 - L2 LINE L2 -483 2831 2702 319 169 108 0 chr13 5535366 5535431 -96337738 + MER57A LTR ERV1 1 72 -331 572 270 150 10 chr13 5535480 5535837 -96337332 - L1M4 LINE L1 -841 5305 4886 2005 145 0 7 chr13 5535863 5536166 -96337003 + AluSx SINE Alu 1 301 -11 2435 76 3 0 chr13 5536316 5536618 -96336551 + AluY SINE Alu 1 303 -8 2329 82 0 14 chr13 5537001 5537294 -96335875 + AluSg SINE Alu 1 289 -21 188 204 204 0 chr13 5537745 5537799 -96335370 - L2 LINE L2 -8 3264 3200 186 43 0 0 chr13 5537978 5538001 -96335168 + (CA)n Simple_repeat Simple_repeat 1 23 0 743 257 18 0 chr13 5538092 5538263 -96334906 + MER5B DNA MER1_type 5 178 0 337 261 34 0 chr13 5538280 5538368 -96334801 + MER5A DNA MER1_type 14 104 -85 636 227 0 65 chr13 5538467 5538621 -96334548 + MLT1D LTR MaLR 3 146 -359 1378 232 171 5 chr13 5538624 5539097 -96334072 - L1MC4 LINE L1 -666 7376 6983 258 32 0 0 chr13 5539097 5539128 -96334041 + (CA)n Simple_repeat Simple_repeat 1 31 0 1378 232 171 5 chr13 5539128 5539245 -96333924 - L1MC4 LINE L1 -1059 6983 6540 957 218 198 43 chr13 5539348 5539796 -96333373 + L1ME1 LINE L1 5523 6041 -125 1440 183 63 0 chr13 5539796 5540064 -96333105 - AluJb SINE Alu -27 285 1 957 218 198 43 chr13 5540064 5540158 -96333011 + L1ME1 LINE L1 6041 6119 -47 21 0 0 0 chr13 5540333 5540354 -96332815 + AT_rich Low_complexity Low_complexity 1 21 0 9192 172 12 7 chr13 5540424 5540840 -96332329 - L1PA15 LINE L1 -9 6156 5744 2107 108 3 45 chr13 5540840 5541154 -96332015 - AluSx SINE Alu -11 301 1 9192 172 12 7 chr13 5541154 5543301 -96329868 - L1PA15 LINE L1 -421 5744 3606 2119 124 10 0 chr13 5543807 5544105 -96329064 + AluSx SINE Alu 1 301 -11 204 274 88 62 chr13 5544459 5544510 -96328659 - L2 LINE L2 -939 2375 2327 2077 80 0 0 chr13 5544510 5544760 -96328409 + AluY SINE Alu 40 289 -22 204 274 88 62 chr13 5544760 5544821 -96328348 - L2 LINE L2 -987 2327 2260 2681 171 24 4 chr13 5544857 5545355 -96327814 + L1MB3 LINE L1 5456 5963 -208 249 189 122 0 chr13 5545363 5545437 -96327732 + L1MA5 LINE L1 6209 6291 -9 1035 167 14 14 chr13 5545444 5545675 -96327494 + L1MB3 LINE L1 5945 6176 -7 462 315 64 8 chr13 5545748 5545999 -96327170 - L2 LINE L2 -1159 2155 1891 224 297 171 9 chr13 5546030 5546141 -96327028 + L2 LINE L2 3184 3312 -1 499 234 2 28 chr13 5546164 5546305 -96326864 + L1ME1 LINE L1 6029 6164 0 2295 86 33 0 chr13 5547056 5547359 -96325810 + AluSp SINE Alu 1 313 0 2395 56 0 3 chr13 5548365 5548677 -96324492 + AluY SINE Alu 1 311 0 2216 255 19 36 chr13 5549952 5550649 -96322520 + L1MEc LINE L1 58 742 -5654 3054 245 56 49 chr13 5550660 5552841 -96320328 + L1MEc LINE L1 953 3123 -3092 2464 72 13 0 chr13 5552841 5553147 -96320022 + AluY SINE Alu 1 310 -1 3054 245 56 49 chr13 5553147 5553216 -96319953 + L1MEc LINE L1 3123 3190 -3025 3103 184 56 6 chr13 5553324 5553971 -96319198 + L1MEc LINE L1 3344 4022 -2193 783 243 41 4 chr13 5553967 5554235 -96318934 + L1M4 LINE L1 3099 3376 -2770 * 569 172 26 9 chr13 5554775 5554891 -96318278 + L1MB4 LINE L1 6051 6168 -12 25 51 0 0 chr13 5554899 5554938 -96318231 + AT_rich Low_complexity Low_complexity 1 39 0 273 214 121 14 chr13 5555227 5555367 -96317802 - MLT1L LTR MaLR -32 583 429 266 230 0 87 chr13 5555444 5555571 -96317598 - MLT1J LTR MaLR -326 289 110 273 280 76 49 chr13 5555733 5555902 -96317267 + MIR SINE MIR 17 191 -71 214 147 0 0 chr13 5558175 5558209 -96314960 + (CAG)n Simple_repeat Simple_repeat 2 35 0 1800 167 3 32 chr13 5559765 5560076 -96313093 + AluJo SINE Alu 1 302 -10 917 122 0 0 chr13 5560094 5560217 -96312952 + FLAM_C SINE Alu 1 123 -10 25 51 0 0 chr13 5560290 5560329 -96312840 + AT_rich Low_complexity Low_complexity 1 39 0 1914 103 24 0 chr13 5560521 5560812 -96312357 + AluY SINE Alu 1 298 -13 2363 81 3 3 chr13 5560812 5561120 -96312049 + AluY SINE Alu 1 308 -3 377 246 70 21 chr13 5561148 5561290 -96311879 + MLT1J2 LTR MaLR 73 221 -229 1218 114 18 44 chr13 5561476 5561703 -96311466 - THE1C LTR MaLR 0 375 155 1190 165 64 23 chr13 5563546 5563764 -96309405 + AluJo SINE Alu 1 227 -85 205 122 73 24 chr13 5564312 5564353 -96308816 - L2 LINE L2 -2 3311 3269 2488 74 0 0 chr13 5564455 5564766 -96308403 + AluY SINE Alu 1 311 0 408 351 29 23 chr13 5564834 5565008 -96308161 - MIR3 SINE MIR -28 180 6 793 225 19 0 chr13 5565147 5565307 -96307862 + FRAM SINE Alu 1 163 -3 2384 169 29 2 chr13 5565702 5566117 -96307052 + MSTB LTR MaLR 1 426 0 6670 183 137 1 chr13 5566117 5567566 -96305603 + MSTB-int LTR MaLR 1 1645 -6 1099 180 0 0 chr13 5567571 5567760 -96305409 + MSTB LTR MaLR 1 189 -237 385 283 35 12 chr13 5567784 5567957 -96305212 + L1PB3 LINE L1 3 179 -6684 1670 149 11 13 chr13 5567972 5568431 -96304738 + L1PB3 LINE L1 1403 1860 -5003 * 27703 62 9 5 chr13 5568429 5569316 -96303853 - L1PA6 LINE L1 -5 6149 5267 1019 119 6 6 chr13 5569316 5569476 -96303693 - L1PA6 LINE L1 -10 6144 5985 27703 62 9 5 chr13 5569476 5573179 -96299990 - L1PA6 LINE L1 -887 5267 1552 15589 66 7 4 chr13 5573279 5575464 -96297705 - L1P LINE L1 -2530 3616 1425 11626 211 39 25 chr13 5575478 5579497 -96293672 + L1PB3 LINE L1 1888 6050 -820 2189 123 0 3 chr13 5579497 5579798 -96293371 + AluSc SINE Alu 1 300 -9 11626 211 39 25 chr13 5579798 5580256 -96292913 + L1PB3 LINE L1 6050 6500 -370 1855 74 18 0 chr13 5580256 5580485 -96292684 + AluSx SINE Alu 63 295 -17 2342 111 24 26 chr13 5580528 5580907 -96292262 + L1PB3 LINE L1 6493 6870 0 1235 164 36 5 chr13 5580937 5581157 -96292012 + MSTB LTR MaLR 200 426 0 2015 284 73 40 chr13 5583599 5584066 -96289103 - L1MC4a LINE L1 -748 5398 4948 2518 52 3 0 chr13 5584066 5584373 -96288796 - AluY SINE Alu -3 308 1 2015 284 73 40 chr13 5584373 5585140 -96288029 - L1MC4a LINE L1 -1198 4948 4208 2122 118 35 0 chr13 5585140 5585428 -96287741 + AluSx SINE Alu 1 298 -14 2015 284 73 40 chr13 5585428 5585516 -96287653 - L1MC4a LINE L1 -1938 4208 4124 1406 124 55 0 chr13 5585516 5585734 -96287435 + MER30 DNA MER1_type 1 230 0 2015 284 73 40 chr13 5585734 5587384 -96285785 - L1MC4a LINE L1 -2022 4124 3026 2140 139 0 3 chr13 5587384 5587685 -96285484 - AluSx SINE Alu -12 300 1 2015 284 73 40 chr13 5587685 5588048 -96285121 - L1MC4a LINE L1 -3120 3026 2676 385 332 55 6 chr13 5588148 5588418 -96284751 - L1MC4a LINE L1 -3581 2565 2278 2297 82 0 60 chr13 5588591 5588922 -96284247 - AluY SINE Alu 0 311 1 207 0 0 0 chr13 5589321 5589344 -96283825 + (TA)n Simple_repeat Simple_repeat 2 24 0 2114 112 42 0 chr13 5589433 5589719 -96283450 + AluSx SINE Alu 1 298 -14 213 39 0 0 chr13 5589858 5589884 -96283285 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2280 98 3 16 chr13 5590619 5590934 -96282235 - AluSx SINE Alu 0 312 2 226 322 0 0 chr13 5591156 5591215 -96281954 + L2 LINE L2 3250 3308 -5 22 0 0 0 chr13 5591675 5591697 -96281472 + AT_rich Low_complexity Low_complexity 1 22 0 2501 63 0 0 chr13 5591898 5592198 -96280971 - AluY SINE Alu -11 300 1 1273 105 0 0 chr13 5592313 5592484 -96280685 + AluSp SINE Alu 133 303 -10 2276 113 0 0 chr13 5593748 5594048 -96279121 - AluSx SINE Alu -12 300 1 354 332 124 0 chr13 5594623 5594825 -96278344 + MIR SINE MIR 2 228 -34 898 183 0 56 chr13 5595026 5595074 -96278095 - MER5A DNA MER1_type -19 170 121 1888 142 0 17 chr13 5595074 5595404 -96277765 + AluJb SINE Alu 1 325 0 898 183 0 56 chr13 5595404 5595533 -96277636 - MER5A DNA MER1_type -68 121 1 2045 170 18 0 chr13 5595600 5595930 -96277239 - MER1B DNA MER1_type -1 336 1 2810 100 47 7 chr13 5596346 5596776 -96276393 - L1PA13 LINE L1 0 6163 5717 471 170 0 80 chr13 5596776 5596876 -96276293 - MER20 DNA MER1_type -11 208 117 6730 101 16 0 chr13 5596891 5597917 -96275252 - L1P LINE L1 -3251 2895 1854 12541 106 12 12 chr13 5598018 5601069 -96272100 - L1P3 LINE L1 -3390 3071 1 273 353 59 0 chr13 5601093 5601178 -96271991 + MIR SINE MIR 34 123 -85 1845 136 14 32 chr13 5601504 5601850 -96271319 - Tigger7 DNA MER2_type 0 2587 2248 537 167 17 50 chr13 5601858 5601978 -96271191 - Tigger7 DNA MER2_type -589 116 1 1142 233 185 75 chr13 5602038 5602621 -96270548 + MLT1E2 LTR MaLR 4 622 -4 207 0 0 0 chr13 5602737 5602760 -96270409 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2135 112 3 0 chr13 5602762 5603049 -96270120 - AluSc SINE Alu -21 288 1 369 271 31 16 chr13 5604234 5604363 -96268806 - MLT1L LTR MaLR -17 598 468 951 302 211 34 chr13 5604741 5605665 -96267504 - L2 LINE L2 -480 2834 1747 1785 163 101 31 chr13 5606815 5607108 -96266061 + MER65C LTR ERV1 1 335 -126 2243 119 0 0 chr13 5607108 5607402 -96265767 - AluSx SINE Alu -14 298 5 1785 163 101 31 chr13 5607402 5607532 -96265637 + MER65C LTR ERV1 335 454 -7 2182 106 3 7 chr13 5608544 5608845 -96264324 + AluSx SINE Alu 1 300 -12 585 255 130 11 chr13 5609658 5609842 -96263327 + MIR SINE MIR 5 210 -52 1515 168 22 16 chr13 5611402 5611724 -96261445 - L1MB3 LINE L1 -1 6182 5859 25 31 0 0 chr13 5611991 5612023 -96261146 + AT_rich Low_complexity Low_complexity 1 32 0 278 336 54 0 chr13 5612043 5612192 -96260977 + MIR SINE MIR 56 212 -50 3585 107 2 4 chr13 5612263 5612775 -96260394 - MER9 LTR ERVK 0 511 1 2047 88 4 0 chr13 5612776 5613037 -96260132 - AluSc SINE Alu -47 262 1 36 0 0 0 chr13 5613364 5613400 -96259769 + AT_rich Low_complexity Low_complexity 1 36 0 469 179 83 36 chr13 5613440 5613608 -96259561 - MER104 DNA MER2_type -3 177 2 339 309 77 65 chr13 5613965 5614211 -96258958 - L2 LINE L2 -28 3285 3037 6565 91 27 21 chr13 5614214 5614400 -96258769 + L1MA2 LINE L1 5148 5332 -972 2071 141 0 16 chr13 5614400 5614705 -96258464 + AluSx SINE Alu 1 300 -12 6565 91 27 21 chr13 5614705 5615657 -96257512 + L1MA2 LINE L1 5332 6296 -8 913 225 10 0 chr13 5615743 5615943 -96257226 + L1MCa LINE L1 19 220 -6206 1894 82 0 0 chr13 5615943 5616176 -96256993 + AluSc SINE Alu 1 233 -76 207 0 0 0 chr13 5616188 5616211 -96256958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1357 249 38 0 chr13 5616211 5616608 -96256561 + L1M4 LINE L1 3955 4366 -1780 2218 103 0 7 chr13 5616610 5616910 -96256259 + AluSx SINE Alu 1 298 -14 226 257 0 57 chr13 5617407 5617512 -96255657 + GA-rich Low_complexity Low_complexity 6 104 0 1129 143 38 5 chr13 5617736 5617946 -96255223 + MSTB1 LTR MaLR 192 408 -24 196 222 74 0 chr13 5617963 5618017 -96255152 + MIR SINE MIR 88 145 -117 1415 117 5 0 chr13 5619561 5619803 -96253366 - AluSg/x SINE Alu 0 327 85 2116 57 0 47 chr13 5619805 5620105 -96253064 - AluY SINE Alu -25 286 1 1091 123 0 0 chr13 5620463 5620609 -96252560 + AluSg/x SINE Alu 134 279 -31 24 0 0 0 chr13 5620935 5620959 -96252210 + AT_rich Low_complexity Low_complexity 1 24 0 410 311 129 13 chr13 5621238 5621463 -96251706 - MIR SINE MIR -6 256 6 189 0 0 0 chr13 5621662 5621683 -96251486 + (TA)n Simple_repeat Simple_repeat 1 21 0 2450 73 3 0 chr13 5621683 5621986 -96251183 - AluY SINE Alu -7 304 1 203 356 17 0 chr13 5622141 5622200 -96250969 - L2 LINE L2 -86 3186 3127 450 0 0 0 chr13 5623060 5623110 -96250059 + (TA)n Simple_repeat Simple_repeat 2 51 0 2333 78 3 0 chr13 5623110 5623404 -96249765 - AluY SINE Alu -16 295 1 203 356 17 0 chr13 5623559 5623618 -96249551 - L2 LINE L2 -86 3186 3127 207 0 0 0 chr13 5624462 5624485 -96248684 + (A)n Simple_repeat Simple_repeat 1 23 0 2440 52 0 3 chr13 5624486 5624776 -96248393 + AluY SINE Alu 1 289 -22 309 279 62 50 chr13 5624858 5625037 -96248132 + L1MDa LINE L1 1170 1350 -5190 495 201 117 13 chr13 5625040 5625194 -96247975 + L1MD3 LINE L1 6731 6900 -1095 2348 96 0 16 chr13 5625257 5625569 -96247600 + AluSx SINE Alu 1 307 -5 1078 194 91 142 chr13 5625657 5626126 -96247043 - Charlie2 DNA MER1_type -155 2707 2304 1102 144 0 0 chr13 5626126 5626314 -96246855 + L1MA5 LINE L1 6111 6298 -2 1078 194 91 142 chr13 5626314 5626744 -96246425 - Charlie2 DNA MER1_type -558 2304 1854 446 247 55 7 chr13 5626748 5626894 -96246275 - Charlie2 DNA MER1_type -2541 321 169 529 287 72 21 chr13 5626938 5627273 -96245896 + L1MEc LINE L1 44 395 -6001 1026 227 74 60 chr13 5627356 5627831 -96245338 - L1MC/D LINE L1 -743 5797 5608 311 221 0 117 chr13 5627955 5628118 -96245051 - L1MC/D LINE L1 -1116 5424 5281 1769 124 4 0 chr13 5628276 5628432 -96244737 - AluSx SINE Alu -32 280 121 243 0 0 0 chr13 5628432 5628459 -96244710 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1769 124 4 0 chr13 5628459 5628559 -96244610 - AluSx SINE Alu -191 121 23 594 311 125 22 chr13 5628668 5629501 -96243668 - L1MC/D LINE L1 -1437 5103 4184 1081 197 112 16 chr13 5629545 5629676 -96243493 - AluJo SINE Alu -39 273 156 189 0 0 0 chr13 5629676 5629697 -96243472 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1081 197 112 16 chr13 5629697 5629814 -96243355 - AluJo SINE Alu -156 156 1 266 306 32 35 chr13 5629987 5630301 -96242868 - L1MC/D LINE L1 -2515 4025 3713 21 0 0 0 chr13 5630788 5630809 -96242360 + AT_rich Low_complexity Low_complexity 1 21 0 729 316 128 46 chr13 5632012 5632348 -96240821 - L1M4 LINE L1 -1120 5026 4719 1996 159 3 0 chr13 5632348 5632638 -96240531 - AluSx SINE Alu -19 293 3 729 316 128 46 chr13 5632638 5632934 -96240235 - L1M4 LINE L1 -1427 4719 4342 186 43 0 0 chr13 5633025 5633048 -96240121 + (GA)n Simple_repeat Simple_repeat 1 23 0 639 144 0 136 chr13 5633050 5633182 -96239987 - FLAM_A SINE Alu -19 114 1 282 280 81 57 chr13 5633254 5633465 -96239704 - L1M4 LINE L1 -1956 4190 3975 2580 61 0 0 chr13 5633848 5634159 -96239010 - AluY SINE Alu 0 311 1 325 276 24 16 chr13 5634348 5634471 -96238698 - L1MC/D LINE L1 -3965 2575 2452 432 287 108 25 chr13 5634810 5635196 -96237973 - L1MEc LINE L1 -809 1767 1270 742 271 70 11 chr13 5635236 5635509 -96237660 - LTR68 LTR ERV1 -451 289 1 1238 180 54 0 chr13 5636283 5636522 -96236647 + L1PB4 LINE L1 5893 6144 -12 2272 126 0 0 chr13 5636929 5637238 -96235931 - AluSx SINE Alu -3 309 1 2890 68 20 5 chr13 5637500 5637898 -96235271 + MLT2A1 LTR ERVL 1 404 -40 243 200 0 15 chr13 5637899 5637964 -96235205 + (TA)n Simple_repeat Simple_repeat 1 64 0 341 47 0 0 chr13 5638014 5638057 -96235112 - MLT2A2 LTR ERVL 0 453 411 234 0 0 0 chr13 5638156 5638182 -96234987 + (TA)n Simple_repeat Simple_repeat 1 26 0 355 69 0 52 chr13 5638234 5638292 -96234877 + MLT2A1 LTR ERVL 399 453 0 353 74 19 0 chr13 5638292 5638346 -96234823 + HERVL-A1 LTR ERVL 1 55 -5599 * 22504 57 11 7 chr13 5638338 5640697 -96232472 + HERVL-A1 LTR ERVL 2677 5052 -602 2115 93 39 0 chr13 5640697 5640977 -96232192 + AluY SINE Alu 1 291 -20 22504 57 11 7 chr13 5640977 5641583 -96231586 + HERVL-A1 LTR ERVL 5052 5654 0 2831 65 48 83 chr13 5641583 5642043 -96231126 + MLT2A1 LTR ERVL 1 444 0 220 222 49 0 chr13 5642201 5642282 -96230887 + (TA)n Simple_repeat Simple_repeat 2 86 0 2193 112 0 7 chr13 5642789 5643093 -96230076 + AluSg SINE Alu 1 302 -8 572 222 8 0 chr13 5643943 5644060 -96229109 + FAM SINE Alu 31 148 -37 180 0 0 0 chr13 5644369 5644389 -96228780 + (T)n Simple_repeat Simple_repeat 1 20 0 2366 195 28 28 chr13 5645045 5645589 -96227580 - MER44D DNA MER2_type 0 605 7 2019 164 82 9 chr13 5645985 5646412 -96226757 - LTR32 LTR ERVL -5 466 9 237 274 62 60 chr13 5646585 5646747 -96226422 + MIR3 SINE MIR 15 180 -82 276 219 167 0 chr13 5648939 5649035 -96224134 - MIR SINE MIR -70 192 81 279 277 71 36 chr13 5649111 5649223 -96223946 - MIR SINE MIR -63 145 68 2375 95 0 0 chr13 5650445 5650751 -96222418 + AluY SINE Alu 3 308 -3 726 283 40 4 chr13 5651671 5651947 -96221222 + MER46C DNA MER2_type 1 286 -52 21 0 0 0 chr13 5653258 5653279 -96219890 + AT_rich Low_complexity Low_complexity 1 21 0 2554 62 7 3 chr13 5665265 5665574 -96207595 - AluY SINE Alu -1 310 1 21 0 0 0 chr13 5665632 5665653 -96207516 + AT_rich Low_complexity Low_complexity 1 21 0 1520 148 26 4 chr13 5665923 5666153 -96207016 - MER46A DNA MER2_type -1 235 1 213 278 33 56 chr13 5666320 5666410 -96206759 + MIR3 SINE MIR 73 160 -48 2270 100 0 0 chr13 5666892 5667192 -96205977 + AluSg1 SINE Alu 1 300 -9 245 167 0 45 chr13 5668763 5668829 -96204340 + GA-rich Low_complexity Low_complexity 2 64 0 27 0 0 0 chr13 5669378 5669405 -96203764 + AT_rich Low_complexity Low_complexity 1 27 0 2183 116 0 3 chr13 5669621 5669931 -96203238 - AluSg1 SINE Alu 0 309 1 27 0 0 0 chr13 5670696 5670723 -96202446 + AT_rich Low_complexity Low_complexity 1 27 0 268 341 81 32 chr13 5671048 5671171 -96201998 - L2 LINE L2 -28 3244 3116 24 53 0 0 chr13 5671478 5671516 -96201653 + AT_rich Low_complexity Low_complexity 1 38 0 192 311 100 33 chr13 5671720 5671810 -96201359 + MIR SINE MIR 97 192 -70 406 267 153 28 chr13 5672115 5672291 -96200878 - L2 LINE L2 -157 3115 2918 228 247 169 26 chr13 5672312 5672389 -96200780 - L2 LINE L2 -22 3250 3163 237 262 36 12 chr13 5672851 5672935 -96200234 - L2 LINE L2 -926 2388 2303 431 258 113 25 chr13 5673217 5673376 -96199793 - MIR SINE MIR -87 175 3 245 339 184 30 chr13 5673429 5673933 -96199236 - L2 LINE L2 -1112 2202 1621 2243 119 40 57 chr13 5674801 5675171 -96197998 + THE1B LTR MaLR 1 364 0 383 264 50 36 chr13 5675580 5675720 -96197449 + MARNA DNA Mariner 248 389 -197 1122 232 50 53 chr13 5675727 5676106 -96197063 + L1ME3A LINE L1 5788 6165 -5 31 82 0 0 chr13 5680814 5680887 -96192282 + AT_rich Low_complexity Low_complexity 1 73 0 369 296 64 0 chr13 5680931 5681056 -96192113 - MER94 DNA DNA 0 134 2 21 36 0 0 chr13 5682328 5682356 -96190813 + AT_rich Low_complexity Low_complexity 1 28 0 2179 110 0 31 chr13 5682377 5682695 -96190474 + AluSx SINE Alu 1 308 -4 21 0 0 0 chr13 5682817 5682838 -96190331 + AT_rich Low_complexity Low_complexity 1 21 0 408 274 32 25 chr13 5683201 5683358 -96189811 - L1ME3 LINE L1 -7 6155 5998 2168 113 3 0 chr13 5684198 5684490 -96188679 - AluSq SINE Alu -12 301 9 2228 121 0 0 chr13 5684938 5685244 -96187925 + AluSq SINE Alu 1 306 -7 184 116 163 23 chr13 5685939 5685982 -96187187 + L2 LINE L2 3219 3267 -5 2419 105 0 0 chr13 5686025 5686329 -96186840 - AluSx SINE Alu -8 304 1 2257 100 3 0 chr13 5686332 5686652 -96186517 - AluSq SINE Alu 0 321 1 2259 90 7 0 chr13 5686679 5686969 -96186200 - AluSq SINE Alu -21 292 1 232 236 163 65 chr13 5687381 5687504 -96185665 - MIR3 SINE MIR -34 174 40 1960 97 0 0 chr13 5687776 5688024 -96185145 - AluSq SINE Alu -65 248 1 222 242 39 102 chr13 5689922 5690050 -96183119 + MIR3 SINE MIR 83 202 -6 2327 99 3 0 chr13 5690688 5691000 -96182169 - AluSq SINE Alu 0 313 1 369 109 0 0 chr13 5691158 5691213 -96181956 + (TTGG)n Simple_repeat Simple_repeat 1 55 0 2247 88 0 3 chr13 5691794 5692105 -96181064 - AluY SINE Alu 0 310 1 2243 104 0 3 chr13 5692652 5692951 -96180218 - AluY SINE Alu -13 298 1 2154 127 0 0 chr13 5692965 5693264 -96179905 - AluY SINE Alu -12 299 1 1430 208 20 60 chr13 5693372 5693772 -96179397 - L1MA10 LINE L1 -1 6333 5950 1902 129 0 85 chr13 5693787 5694128 -96179041 + AluSx SINE Alu 1 312 0 313 276 0 11 chr13 5694795 5694882 -96178287 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 111 22 89 chr13 5695066 5695111 -96178058 + Alu SINE Alu 85 126 -176 180 271 62 0 chr13 5695406 5695454 -96177715 + L2 LINE L2 3204 3254 -18 253 270 14 27 chr13 5695518 5695592 -96177577 + L2 LINE L2 2243 2315 -999 2173 73 12 76 chr13 5696602 5696931 -96176238 + AluSc SINE Alu 1 308 -1 324 303 119 88 chr13 5698087 5698800 -96174369 + L1M2 LINE L1 695 1429 -5420 184 257 57 43 chr13 5699289 5699359 -96173810 + L2 LINE L2 3116 3186 -86 1242 119 0 0 chr13 5699875 5700035 -96173134 + AluSx SINE Alu 1 160 -152 1814 154 48 3 chr13 5700076 5700408 -96172761 + L1MB7 LINE L1 5822 6168 -16 1743 113 132 4 chr13 5701582 5701847 -96171322 - AluSx SINE Alu -13 299 1 202 211 19 0 chr13 5702524 5702576 -96170593 + CT-rich Low_complexity Low_complexity 4 56 0 243 0 0 0 chr13 5703227 5703254 -96169915 + (TG)n Simple_repeat Simple_repeat 1 27 0 264 59 0 0 chr13 5703254 5703288 -96169881 + (GA)n Simple_repeat Simple_repeat 2 35 0 228 67 0 0 chr13 5703627 5703657 -96169512 + (TAA)n Simple_repeat Simple_repeat 1 30 0 480 272 63 32 chr13 5703669 5703827 -96169342 - MIR SINE MIR -18 244 82 276 264 136 16 chr13 5703889 5704014 -96169155 + L3 LINE CR1 1174 1313 -264 236 264 186 8 chr13 5704156 5704285 -96168884 - MIR SINE MIR -109 153 2 360 0 0 0 chr13 5704459 5704499 -96168670 + (CA)n Simple_repeat Simple_repeat 1 40 0 1304 114 5 0 chr13 5705245 5705429 -96167740 - AluSq SINE Alu 0 313 129 22 88 0 0 chr13 5705591 5705648 -96167521 + AT_rich Low_complexity Low_complexity 1 57 0 1278 134 4 78 chr13 5705887 5706119 -96167050 - AluJo SINE Alu -13 299 85 1021 150 17 11 chr13 5707903 5708083 -96165086 - Tigger1 DNA MER2_type 0 2418 2238 1068 70 0 0 chr13 5708083 5708212 -96164957 + AluY SINE Alu 1 129 -182 347 44 0 0 chr13 5708214 5708259 -96164910 + AluY SINE Alu 252 296 -6 * 11861 110 18 10 chr13 5708257 5708461 -96164708 - Tigger1 DNA MER2_type -631 1787 1586 2175 123 7 0 chr13 5708461 5708761 -96164408 - AluSq SINE Alu -11 302 1 11861 110 18 10 chr13 5708761 5710281 -96162888 - Tigger1 DNA MER2_type -832 1586 46 2515 55 0 10 chr13 5710281 5710590 -96162579 + AluY SINE Alu 1 306 -5 11861 110 18 10 chr13 5710590 5710609 -96162560 - Tigger1 DNA MER2_type -2372 46 29 647 76 0 0 chr13 5710963 5711055 -96162114 + L1P5 LINE L1 5405 5496 -658 22 56 0 0 chr13 5711333 5711369 -96161800 + AT_rich Low_complexity Low_complexity 1 36 0 312 145 0 0 chr13 5711716 5711786 -96161383 + Alu SINE Alu 248 299 -2 2421 70 6 13 chr13 5711847 5712160 -96161009 - AluY SINE Alu 0 311 1 1885 94 106 0 chr13 5712161 5712436 -96160733 - AluSp SINE Alu -9 304 1 2468 57 0 10 chr13 5714734 5715031 -96158138 + AluY SINE Alu 1 294 -17 2046 149 0 7 chr13 5715164 5715472 -96157697 - AluSx SINE Alu -6 306 1 2154 120 3 3 chr13 5715735 5716034 -96157135 - AluSp SINE Alu -14 299 1 2394 75 0 0 chr13 5716779 5717074 -96156095 + AluY SINE Alu 1 295 -16 2355 112 0 3 chr13 5717776 5718089 -96155080 - AluSx SINE Alu 0 312 1 827 227 92 14 chr13 5718384 5718666 -96154503 + MER113 DNA MER1_type? 28 331 -190 490 202 52 88 chr13 5718666 5718754 -96154415 + L1M4 LINE L1 3001 3091 -3055 2151 97 3 7 chr13 5718754 5719043 -96154126 + AluSx SINE Alu 1 288 -24 490 202 52 88 chr13 5719043 5719226 -96153943 + L1M4 LINE L1 3091 3262 -2884 2115 113 17 0 chr13 5719234 5719525 -96153644 + AluSq SINE Alu 3 298 -15 708 292 144 42 chr13 5719788 5720543 -96152626 + L1M4 LINE L1 4323 5186 -960 1905 150 27 0 chr13 5720543 5720836 -96152333 + AluJo SINE Alu 1 301 -11 708 292 144 42 chr13 5720836 5720980 -96152189 + L1M4 LINE L1 5186 5314 -832 1760 166 7 0 chr13 5721265 5721561 -96151608 - AluSx SINE Alu -14 298 1 280 280 50 38 chr13 5724956 5725210 -96147959 + ALR/Alpha Satellite centromeric 1 257 -1 234 314 13 32 chr13 5725225 5725381 -96147788 + ALR/Alpha Satellite centromeric 15 167 -5 2506 54 10 0 chr13 5725415 5725711 -96147458 - AluY SINE Alu -12 299 1 1615 227 55 23 chr13 5726270 5726706 -96146463 - MER31B LTR ERV1 -10 456 7 877 135 122 80 chr13 5726709 5726896 -96146273 - MER31B-int LTR ERV1 -17 4919 4718 2566 65 0 3 chr13 5726896 5727206 -96145963 + AluY SINE Alu 1 309 -2 877 135 122 80 chr13 5727206 5727255 -96145914 - MER31B-int LTR ERV1 -218 4718 4673 353 152 0 38 chr13 5727428 5727507 -96145662 - LTR37A LTR ERV1 -310 116 41 631 208 44 25 chr13 5727508 5727667 -96145502 - MER31B-int LTR ERV1 -657 4279 4118 10842 93 22 1 chr13 5727858 5730148 -96143021 - L1PA7 LINE L1 -5 6149 3815 6991 95 24 1 chr13 5730149 5731160 -96142009 + L1P LINE L1 2645 3678 -2468 794 195 95 0 chr13 5731165 5731204 -96141965 - MER31B-int LTR ERV1 -813 4123 4089 2263 98 3 10 chr13 5731204 5731500 -96141669 - AluSg SINE Alu -16 294 1 794 195 95 0 chr13 5731500 5731629 -96141540 - MER31B-int LTR ERV1 -847 4089 3939 230 203 63 51 chr13 5731629 5731708 -96141461 - MLT1A2 LTR MaLR -58 316 237 2369 144 103 135 chr13 5731708 5732201 -96140968 - MER31B-int LTR ERV1 -1078 3858 3396 2227 101 7 0 chr13 5732201 5732497 -96140672 - AluY SINE Alu -13 298 1 2369 144 103 135 chr13 5732497 5732766 -96140403 - MER31B-int LTR ERV1 -1540 3396 3120 1669 148 162 73 chr13 5732767 5733138 -96140031 - MER4A LTR ERV1 0 664 261 473 156 89 0 chr13 5733138 5733228 -96139941 - MER4A LTR ERV1 -566 98 1 1496 247 27 25 chr13 5733233 5733675 -96139494 - MER31B-int LTR ERV1 -1819 3117 2675 2562 61 0 0 chr13 5733676 5733987 -96139182 + AluY SINE Alu 1 311 0 1976 92 86 3 chr13 5734001 5734275 -96138894 + MER4E LTR ERV1 1 304 -462 180 0 0 0 chr13 5734275 5734295 -96138874 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 1976 92 86 3 chr13 5734295 5734312 -96138857 + MER4E LTR ERV1 304 317 -449 2634 147 40 4 chr13 5734312 5734618 -96138551 - LTR19A LTR ERV1 0 486 156 3562 111 24 29 chr13 5734618 5735168 -96138001 - LTR10B LTR ERV1 0 547 1 2634 147 40 4 chr13 5735168 5735330 -96137839 - LTR19A LTR ERV1 -330 156 1 2877 65 4 152 chr13 5735330 5735358 -96137811 + MER4E LTR ERV1 311 341 -425 1463 87 82 19 chr13 5735358 5735566 -96137603 - AluSc SINE Alu -12 297 77 2877 65 4 152 chr13 5735566 5735840 -96137329 + MER4E LTR ERV1 341 654 -112 2260 118 0 3 chr13 5735840 5736145 -96137024 - AluSq SINE Alu -9 304 1 2877 65 4 152 chr13 5736145 5736188 -96136981 + MER4E LTR ERV1 654 702 -64 2357 94 3 0 chr13 5736188 5736486 -96136683 - AluSp SINE Alu -14 299 1 2877 65 4 152 chr13 5736486 5736665 -96136504 + MER4E LTR ERV1 702 759 -7 5153 178 106 85 chr13 5736672 5738053 -96135116 - MER31B-int LTR ERV1 -2258 2678 1251 2239 123 0 0 chr13 5738053 5738354 -96134815 - AluSx SINE Alu -11 301 1 5153 178 106 85 chr13 5738354 5738731 -96134438 - MER31B-int LTR ERV1 -3685 1251 883 1613 221 75 107 chr13 5738738 5739459 -96133710 - MER31B-int LTR ERV1 -4197 739 42 2137 128 0 3 chr13 5739528 5739824 -96133345 - AluSx SINE Alu -17 295 1 1006 147 153 1 chr13 5739866 5740193 -96132976 - MER31B LTR ERV1 0 466 47 887 216 10 113 chr13 5740190 5740336 -96132833 - MER21B LTR ERV1 -601 262 159 * 2493 80 0 0 chr13 5740336 5740647 -96132522 + AluY SINE Alu 1 311 0 887 216 10 113 chr13 5740647 5740792 -96132377 - MER21B LTR ERV1 -704 159 1 376 262 24 0 chr13 5741686 5741770 -96131399 + MIR SINE MIR 20 105 -157 193 327 0 0 chr13 5741804 5741856 -96131313 + MIR SINE MIR 197 248 -14 226 253 93 47 chr13 5743185 5743335 -96129834 - L1MC5 LINE L1 -48 7913 7757 1511 173 63 70 chr13 5743717 5744018 -96129151 - AluJb SINE Alu -13 299 1 21 0 0 0 chr13 5744973 5744994 -96128175 + AT_rich Low_complexity Low_complexity 1 21 0 230 215 0 15 chr13 5745172 5745237 -96127932 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 22 35 0 0 chr13 5745318 5745347 -96127822 + AT_rich Low_complexity Low_complexity 1 29 0 2446 110 0 46 chr13 5745503 5745894 -96127275 - L1PB3 LINE L1 0 6154 5782 33 0 0 0 chr13 5745918 5745951 -96127218 + AT_rich Low_complexity Low_complexity 1 33 0 352 123 0 84 chr13 5745951 5746034 -96127135 - L1PB3 LINE L1 -360 5791 5727 1185 126 0 0 chr13 5746034 5746208 -96126961 - AluY SINE Alu -2 309 136 1248 88 57 0 chr13 5746208 5746400 -96126769 - L1PB3 LINE L1 -421 5733 5531 252 300 18 40 chr13 5746541 5746797 -96126372 + ALR/Alpha Satellite centromeric 1 250 -5 1064 41 0 0 chr13 5746831 5746953 -96126216 - AluY SINE Alu -12 299 178 340 260 41 37 chr13 5746960 5747590 -96125579 + ALR/Alpha Satellite centromeric 1 632 -23 234 265 48 42 chr13 5747699 5747865 -96125304 + ALR/Alpha Satellite centromeric 1 167 -5 414 256 20 20 chr13 5748139 5748349 -96124820 + ALR/Alpha Satellite centromeric 1 210 -40 2327 93 3 0 chr13 5748416 5748717 -96124452 + AluSp SINE Alu 1 302 -11 244 261 31 23 chr13 5748776 5748906 -96124263 + ALR/Alpha Satellite centromeric 1 131 -41 294 267 30 22 chr13 5748962 5749097 -96124072 + ALR/Alpha Satellite centromeric 15 150 -22 243 303 25 33 chr13 5750144 5750266 -96122903 - MIR SINE MIR -50 212 92 1550 157 6 52 chr13 5750345 5750531 -96122638 - MER4A LTR ERV1 -1 663 470 2345 103 3 0 chr13 5750531 5750833 -96122336 + AluSx SINE Alu 1 303 -9 1550 157 6 52 chr13 5750833 5751007 -96122162 - MER4A LTR ERV1 -194 470 261 510 124 90 0 chr13 5751007 5751096 -96122073 - MER4A LTR ERV1 -566 98 2 254 70 139 0 chr13 5753139 5753182 -96119987 + L1MB8 LINE L1 6127 6175 -3 2701 42 0 3 chr13 5753407 5753719 -96119450 - AluY SINE Alu 0 311 1 205 254 146 18 chr13 5753738 5753848 -96119321 - MIR SINE MIR -107 155 32 2065 121 0 0 chr13 5753995 5754276 -96118893 + AluSx SINE Alu 14 294 -18 360 127 27 136 chr13 5754431 5754541 -96118628 + MER53 DNA DNA 4 101 -88 183 247 137 14 chr13 5755128 5755201 -96117968 + MIR SINE MIR 124 205 -57 180 286 0 0 chr13 5755810 5755859 -96117310 + MIR SINE MIR 204 252 -10 278 339 65 11 chr13 5756023 5756209 -96116960 - MIR SINE MIR -28 234 39 180 0 0 0 chr13 5756803 5756823 -96116346 + (TTA)n Simple_repeat Simple_repeat 2 21 0 228 276 118 0 chr13 5758054 5758130 -96115039 + MIR SINE MIR 62 146 -62 203 176 137 0 chr13 5758714 5758765 -96114404 + MER91 DNA MER1_type 58 115 -75 191 320 27 0 chr13 5758971 5759046 -96114123 - L2 LINE L2 -5 3267 3191 221 125 21 21 chr13 5759118 5759166 -96114003 + (TA)n Simple_repeat Simple_repeat 1 48 0 1704 160 6 58 chr13 5759257 5759369 -96113800 + AluJo SINE Alu 1 117 -195 2165 138 3 0 chr13 5759369 5759667 -96113502 + AluSx SINE Alu 1 299 -13 1704 160 6 58 chr13 5759667 5759879 -96113290 + AluJo SINE Alu 117 308 -4 2917 185 9 30 chr13 5760249 5760807 -96112362 + MLT2B3 LTR ERVL 1 546 -8 2176 152 67 34 chr13 5761194 5761715 -96111454 + MLT2A2 LTR ERVL 1 552 -2 235 236 36 0 chr13 5761822 5761877 -96111292 + MIR SINE MIR 92 148 -114 2953 129 13 76 chr13 5761878 5762404 -96110765 + Tigger1 DNA MER2_type 2 494 -1924 4682 131 35 3 chr13 5762407 5763139 -96110030 + L1PA16 LINE L1 5387 6142 -24 3286 127 12 2 chr13 5763161 5763665 -96109504 + Tigger1 DNA MER2_type 480 988 -1430 1153 100 29 18 chr13 5763665 5763835 -96109334 + THE1C LTR MaLR 1 172 -203 672 248 7 26 chr13 5763857 5764010 -96109159 - MER45A DNA AcHobo -1 177 28 2434 96 3 0 chr13 5764241 5764553 -96108616 + AluSp SINE Alu 1 313 0 1072 129 17 11 chr13 5764553 5764731 -96108438 + AluSg/x SINE Alu 134 312 0 300 283 138 25 chr13 5765419 5765744 -96107425 - L1M4 LINE L1 -2931 3215 2854 266 247 39 0 chr13 5766031 5766108 -96107061 - L1M4 LINE L1 -3750 2396 2317 209 316 89 30 chr13 5766285 5766453 -96106716 - L2 LINE L2 -117 3196 3019 354 262 136 0 chr13 5766464 5766567 -96106602 - L2 LINE L2 -8 3305 3189 791 294 151 22 chr13 5766594 5767067 -96106102 - L2 LINE L2 -307 3006 2457 358 176 15 0 chr13 5767513 5767581 -96105588 + MLT2B3 LTR ERVL 3 71 -483 2009 160 134 46 chr13 5767680 5768112 -96105057 + MLT2B3 LTR ERVL 77 546 -8 385 281 69 44 chr13 5768203 5768292 -96104877 + ERVL LTR ERVL 5214 5310 -454 2466 126 28 11 chr13 5768292 5768650 -96104519 + THE1B LTR MaLR 1 364 0 385 281 69 44 chr13 5768650 5768720 -96104449 + ERVL LTR ERVL 5310 5377 -387 2352 214 105 2 chr13 5769009 5769523 -96103646 - MLT1F1 LTR MaLR 0 567 1 277 179 18 0 chr13 5769549 5769605 -96103564 + LTR67 LTR ERVL 6 62 -495 257 274 24 12 chr13 5769863 5769947 -96103222 + LTR67 LTR ERVL 433 517 -40 451 51 0 0 chr13 5770027 5770086 -96103083 - L1PA3 LINE L1 -1009 5137 5079 8262 18 1 0 chr13 5770086 5771089 -96102080 + L1PA3 LINE L1 5149 6152 -3 22 0 0 0 chr13 5771089 5771111 -96102058 + AT_rich Low_complexity Low_complexity 1 22 0 614 101 0 0 chr13 5771270 5771349 -96101820 + AluSg/x SINE Alu 218 296 -13 901 226 98 16 chr13 5771723 5772028 -96101141 - MLT2C1 LTR ERVL -6 391 62 2289 98 0 28 chr13 5772204 5772522 -96100647 - AluY SINE Alu -2 309 1 2343 104 13 0 chr13 5772709 5773017 -96100152 + AluSx SINE Alu 1 312 0 1060 167 118 29 chr13 5774295 5774540 -96098629 - AluJo SINE Alu -8 304 38 256 272 193 9 chr13 5774710 5774824 -96098345 + MIR SINE MIR 11 145 -117 367 203 163 65 chr13 5775964 5776087 -96097082 - MIR SINE MIR -82 180 46 406 216 26 37 chr13 5776382 5776514 -96096655 + L1MD3 LINE L1 5509 5627 -539 800 241 111 26 chr13 5776518 5776578 -96096591 + L1MD3 LINE L1 5943 5997 -1998 2213 119 0 0 chr13 5776578 5776872 -96096297 + AluSx SINE Alu 1 294 -18 800 241 111 26 chr13 5776872 5777179 -96095990 + L1MD3 LINE L1 5997 7995 0 4695 146 53 15 chr13 5778292 5779169 -96094000 + L1MC2 LINE L1 5198 6108 -236 2194 97 31 0 chr13 5779173 5779463 -96093706 + AluSx SINE Alu 1 299 -13 1190 250 3 20 chr13 5779606 5779783 -96093386 + L1ME LINE L1 5406 5578 -588 2500 76 0 0 chr13 5779783 5780087 -96093082 - AluY SINE Alu -7 304 1 1190 250 3 20 chr13 5780087 5780205 -96092964 + L1ME LINE L1 5578 5696 -470 1301 235 71 55 chr13 5780208 5780659 -96092510 - MER101 LTR ERV1 -4 470 13 272 150 0 0 chr13 5780662 5780702 -96092467 + L1ME LINE L1 5694 5733 -429 1841 168 42 81 chr13 5780954 5781360 -96091809 - MLT1B LTR MaLR 0 390 1 312 235 67 123 chr13 5781670 5781849 -96091320 - MIR SINE MIR -88 174 6 23 54 0 0 chr13 5782238 5782275 -96090894 + AT_rich Low_complexity Low_complexity 1 37 0 181 227 0 0 chr13 5782884 5782928 -96090241 - L2 LINE L2 0 3313 3270 384 234 76 145 chr13 5783623 5784161 -96089008 - L1M2 LINE L1 -5704 1145 645 23 0 0 0 chr13 5784284 5784307 -96088862 + GC_rich Low_complexity Low_complexity 1 23 0 679 296 98 22 chr13 5785179 5785793 -96087376 + L2 LINE L2 2524 3283 -30 721 263 52 73 chr13 5786018 5786097 -96087072 - L1ME3 LINE L1 -2 6658 6579 1533 171 90 31 chr13 5786097 5786419 -96086750 + MER2 DNA MER2_type 1 341 -3 721 263 52 73 chr13 5786419 5786666 -96086503 - L1ME3 LINE L1 -81 6579 6339 2380 60 0 0 chr13 5786677 5786962 -96086207 - AluY SINE Alu -3 308 24 582 231 172 14 chr13 5786962 5787252 -96085917 - L1ME3 LINE L1 -691 5971 5647 3892 238 53 34 chr13 5787352 5788599 -96084570 - L1ME3 LINE L1 -2679 3965 2743 2336 119 0 0 chr13 5788599 5788909 -96084260 - AluSg SINE Alu 0 310 1 3892 238 53 34 chr13 5788909 5789161 -96084008 - L1ME3 LINE L1 -3901 2743 2465 1997 135 3 10 chr13 5789161 5789458 -96083711 + AluSx SINE Alu 1 295 -17 3892 238 53 34 chr13 5789458 5789482 -96083687 - L1ME3 LINE L1 -4179 2465 2443 518 45 0 0 chr13 5789512 5789579 -96083590 - L1PB1 LINE L1 -1 6150 6084 2148 122 0 3 chr13 5789581 5789875 -96083294 - AluSx SINE Alu -10 302 10 416 170 160 10 chr13 5789882 5789982 -96083187 - LTR47A LTR ERVL -77 375 261 738 228 78 25 chr13 5790237 5790531 -96082638 - L1ME3 LINE L1 -5159 1666 1169 270 331 122 17 chr13 5790528 5790709 -96082460 - L1ME3 LINE L1 -6166 659 460 * 375 188 196 45 chr13 5790771 5790883 -96082286 + L2 LINE L2 3185 3313 0 2133 104 3 7 chr13 5791376 5791664 -96081505 - AluSq SINE Alu -13 300 14 435 294 64 64 chr13 5792429 5792924 -96080245 + L1M2 LINE L1 4915 5415 -780 2298 113 0 0 chr13 5792924 5793235 -96079934 + AluY SINE Alu 1 311 0 435 294 64 64 chr13 5793235 5793273 -96079896 + L1M2 LINE L1 5415 5452 -743 22 70 0 0 chr13 5794881 5794924 -96078245 + AT_rich Low_complexity Low_complexity 1 43 0 193 308 29 29 chr13 5795106 5795210 -96077959 - MIR SINE MIR -93 169 66 192 97 0 0 chr13 5797144 5797175 -96075994 + (CA)n Simple_repeat Simple_repeat 2 32 0 2027 130 33 0 chr13 5797917 5798216 -96074953 + AluSp SINE Alu 1 309 -4 2571 20 7 3 chr13 5798234 5798529 -96074640 + AluY SINE Alu 1 296 -15 2586 256 112 24 chr13 5798530 5799698 -96073471 + HAL1 LINE L1 1232 2502 -5 389 302 12 69 chr13 5801031 5801107 -96072062 - LTR33 LTR ERVL 0 521 442 2563 42 7 13 chr13 5801107 5801414 -96071755 - AluY SINE Alu -6 305 1 389 302 12 69 chr13 5801414 5801572 -96071597 - LTR33 LTR ERVL -79 442 295 2057 93 61 0 chr13 5802082 5802360 -96070809 - AluSc SINE Alu -14 295 1 2635 181 137 108 chr13 5802767 5803187 -96069982 + L1MC3 LINE L1 6662 7069 -716 368 247 11 0 chr13 5803187 5803276 -96069893 + MLT1F1 LTR MaLR 35 124 -443 2635 181 137 108 chr13 5803276 5803719 -96069450 + L1MC3 LINE L1 7069 7640 -145 1503 147 0 16 chr13 5804649 5804894 -96068275 + AluJo SINE Alu 60 300 -12 1984 99 53 11 chr13 5805339 5805623 -96067546 - AluSp SINE Alu -11 302 7 1066 98 0 0 chr13 5805631 5805763 -96067406 - AluSq/x SINE Alu -181 132 1 1743 241 67 30 chr13 5805881 5806541 -96066628 - L1MCc LINE L1 -5086 1337 654 262 176 20 0 chr13 5806645 5806696 -96066473 - MLT1A1 LTR MaLR -4 361 310 1704 187 10 0 chr13 5806698 5806992 -96066177 - AluJo SINE Alu -14 298 2 542 224 26 13 chr13 5806995 5807147 -96066022 - L1MCc LINE L1 -6246 177 24 1165 206 5 0 chr13 5809953 5810152 -96063017 + Tigger3(Golem) DNA MER2_type 1 200 -2829 224 250 0 0 chr13 5811933 5811989 -96061180 - MIR SINE MIR -172 90 35 983 185 16 11 chr13 5812998 5813182 -96059987 + AluJo SINE Alu 115 299 -13 326 281 248 0 chr13 5814130 5814283 -96058886 + MIR SINE MIR 28 218 -44 2109 107 0 14 chr13 5814453 5814742 -96058427 + AluSx SINE Alu 21 305 -7 181 280 65 19 chr13 5814887 5814994 -96058175 - L2 LINE L2 -913 2401 2290 185 304 74 45 chr13 5815290 5815533 -96057636 - L2 LINE L2 -1103 2211 1962 292 242 96 107 chr13 5815664 5815842 -96057327 - Charlie8 DNA MER1_type -2239 178 3 218 283 106 31 chr13 5816393 5816522 -96056647 + MIR SINE MIR 21 157 -66 2129 126 13 3 chr13 5817956 5818258 -96054911 - AluSq SINE Alu -8 305 1 2135 138 0 3 chr13 5818258 5818563 -96054606 - AluSx SINE Alu -6 306 3 2187 74 0 4 chr13 5818581 5818851 -96054318 - AluY SINE Alu -7 304 36 240 297 79 0 chr13 5818925 5819026 -96054143 - L2 LINE L2 -31 3241 3133 2635 215 16 23 chr13 5819956 5820514 -96052655 - MLT2B3 LTR ERVL 0 554 1 360 294 77 16 chr13 5820913 5821107 -96052062 + MIR SINE MIR 24 229 -33 195 263 0 18 chr13 5821618 5821675 -96051494 - L2 LINE L2 0 3313 3258 1921 133 25 3 chr13 5821790 5822076 -96051093 - AluSx SINE Alu -20 292 1 773 234 93 80 chr13 5822107 5822556 -96050613 - LTR26 LTR ERV1 -10 593 139 395 250 53 88 chr13 5822699 5822858 -96050311 - MER87 LTR ERV1 -393 148 1 536 224 255 19 chr13 5823797 5823958 -96049211 - MER63A DNA MER1_type 0 210 12 2348 101 0 3 chr13 5824259 5824555 -96048614 + AluSx SINE Alu 1 295 -17 542 277 36 54 chr13 5824810 5825034 -96048135 + Charlie8 DNA MER1_type 66 285 -2132 1130 134 76 54 chr13 5825562 5825786 -96047383 + MLT2B2 LTR ERVL 2 230 -285 542 167 9 0 chr13 5825786 5825894 -96047275 + CT-rich Low_complexity Low_complexity 1 109 0 1367 213 11 57 chr13 5825894 5826202 -96046967 + MLT2B3 LTR ERVL 217 509 -45 423 0 0 0 chr13 5826202 5826249 -96046920 + (CA)n Simple_repeat Simple_repeat 2 48 0 1367 213 11 57 chr13 5826249 5826293 -96046876 + MLT2B3 LTR ERVL 509 553 -1 452 244 34 0 chr13 5826302 5826421 -96046748 - MIR SINE MIR -70 192 70 452 352 86 12 chr13 5826471 5826798 -96046371 - L3 LINE CR1 -244 1333 983 446 258 39 16 chr13 5826836 5826964 -96046205 - MER94 DNA DNA -3 131 1 236 210 122 117 chr13 5827204 5827409 -96045760 + MLT1H LTR MaLR 130 335 -214 523 267 62 0 chr13 5827708 5827903 -96045266 - MIR SINE MIR 0 262 56 257 281 123 48 chr13 5828067 5828213 -96044956 + MIR SINE MIR 20 176 -86 312 319 211 0 chr13 5828736 5828940 -96044229 + MIR SINE MIR 2 248 -14 1559 268 136 23 chr13 5829218 5829532 -96043637 + L1MC4 LINE L1 6254 6531 -1511 2211 169 5 23 chr13 5829532 5829929 -96043240 + MLT1B LTR MaLR 1 390 0 1559 268 136 23 chr13 5829929 5830340 -96042829 + L1MC4 LINE L1 6531 8025 -17 2479 130 46 30 chr13 5830373 5830812 -96042357 + L1MB2 LINE L1 5521 5966 -217 1766 159 42 89 chr13 5830812 5830915 -96042254 + MER47A DNA MER2_type 1 107 -2216 2001 94 100 60 chr13 5830915 5831265 -96041904 + THE1B LTR MaLR 1 364 0 1766 159 42 89 chr13 5831265 5831544 -96041625 + MER47A DNA MER2_type 107 365 -1 910 167 25 20 chr13 5831544 5831742 -96041427 + L1MB2 LINE L1 5964 6162 -9 227 263 0 62 chr13 5831946 5832026 -96041143 + L2 LINE L2 3186 3260 -12 235 266 21 43 chr13 5833141 5833235 -96039934 - MIR3 SINE MIR -54 154 63 53 49 0 0 chr13 5834092 5834173 -96038996 + AT_rich Low_complexity Low_complexity 1 81 0 350 304 23 84 chr13 5837208 5837422 -96035747 - L2 LINE L2 -430 2884 2684 916 208 23 32 chr13 5839308 5839529 -96033640 + MER20 DNA MER1_type 1 219 0 2242 117 0 3 chr13 5840402 5840710 -96032459 + AluSx SINE Alu 1 307 -5 427 280 35 55 chr13 5840789 5840989 -96032180 + MIR SINE MIR 1 196 -66 479 250 26 0 chr13 5840991 5841107 -96032062 + MER5A DNA MER1_type 1 119 -70 260 226 32 0 chr13 5841126 5841188 -96031981 + MIR SINE MIR 189 252 -10 1850 83 0 0 chr13 5841193 5841421 -96031748 + AluY SINE Alu 83 310 -1 2289 105 3 0 chr13 5841790 5842095 -96031074 + AluSc SINE Alu 1 306 -3 603 146 48 37 chr13 5842446 5842926 -96030243 + L1MC2 LINE L1 6142 6615 -1170 1847 156 78 23 chr13 5842926 5843272 -96029897 - MLT1A1 LTR MaLR 0 365 1 603 146 48 37 chr13 5843272 5843405 -96029764 + L1MC2 LINE L1 6615 7763 -22 390 21 0 0 chr13 5843437 5843484 -96029685 + (GA)n Simple_repeat Simple_repeat 2 48 0 808 262 41 22 chr13 5843968 5844235 -96028934 + MLT1L LTR MaLR 5 276 -339 3985 110 169 44 chr13 5844373 5845103 -96028066 + LTR12 LTR ERV1 5 825 -1 37367 86 8 8 chr13 5845104 5850082 -96023087 + HERV17 LTR ERV1 17 4954 -1960 629 131 214 16 chr13 5850075 5850327 -96022842 + HERV17 LTR ERV1 703 1141 -5755 * 7028 100 72 59 chr13 5850323 5852701 -96020468 + HERV17 LTR ERV1 504 2438 0 369 289 83 0 chr13 5852841 5852962 -96020207 + MLT1L LTR MaLR 483 613 -2 1717 108 0 12 chr13 5853291 5853532 -96019637 + AluSc SINE Alu 1 238 -71 218 225 0 0 chr13 5853543 5853583 -96019586 + polypurine Low_complexity Low_complexity 4 43 0 479 244 41 16 chr13 5853738 5853861 -96019308 - L1ME2 LINE L1 -21 6143 6018 807 259 44 14 chr13 5853940 5854242 -96018927 - L1ME2 LINE L1 -180 6482 6236 487 353 77 0 chr13 5854242 5854514 -96018655 - LTR16A LTR ERVL 0 450 158 2916 228 33 41 chr13 5854624 5855340 -96017829 - L1ME2 LINE L1 -420 6242 5536 1688 180 28 0 chr13 5855340 5855629 -96017540 - AluJo SINE Alu -14 298 2 2916 228 33 41 chr13 5855629 5856318 -96016851 - L1ME2 LINE L1 -1126 5536 4843 242 222 0 32 chr13 5856322 5856385 -96016784 + CT-rich Low_complexity Low_complexity 3 63 0 1670 259 27 13 chr13 5856401 5856927 -96016242 - L1ME2 LINE L1 -2040 4604 4072 225 100 0 0 chr13 5857008 5857038 -96016131 + Alu SINE Alu 1 30 -269 1454 81 0 11 chr13 5857138 5857323 -96015846 - AluY SINE Alu -128 183 1 5528 219 50 65 chr13 5857699 5857757 -96015412 - L1MB7 LINE L1 -16 6562 6505 2164 119 7 0 chr13 5857757 5858052 -96015117 + AluSq SINE Alu 1 297 -16 5528 219 50 65 chr13 5858052 5859200 -96013969 - L1MB7 LINE L1 -73 6505 5341 786 197 0 14 chr13 5859200 5859342 -96013827 - FRAM SINE Alu -14 162 23 5528 219 50 65 chr13 5859342 5859494 -96013675 - L1MB7 LINE L1 -1237 5341 5188 1938 154 7 13 chr13 5859494 5859799 -96013370 + AluSq SINE Alu 1 303 -10 5528 219 50 65 chr13 5859799 5861507 -96011662 - L1MB7 LINE L1 -1390 5188 3456 2442 96 3 0 chr13 5861507 5861819 -96011350 - AluSp SINE Alu 0 313 1 2382 75 3 28 chr13 5861820 5862139 -96011030 - AluY SINE Alu 0 311 1 5528 219 50 65 chr13 5862139 5862972 -96010197 - L1MB7 LINE L1 -3121 3457 2606 23 0 0 0 chr13 5863032 5863055 -96010114 + AT_rich Low_complexity Low_complexity 1 23 0 5912 238 42 26 chr13 5863063 5864389 -96008780 - L1ME2 LINE L1 -4097 2728 1425 1896 145 38 30 chr13 5864389 5864761 -96008408 + THE1C LTR MaLR 1 375 0 5912 238 42 26 chr13 5864761 5865974 -96007195 - L1ME2 LINE L1 -5400 1425 10 518 87 0 0 chr13 5866542 5866611 -96006558 + AluSc SINE Alu 176 244 -65 5725 107 55 31 chr13 5866749 5866881 -96006288 - MER4-int LTR ERV1 -228 6370 6243 2883 9 0 3 chr13 5866881 5867200 -96005969 - AluYb8 SINE Alu 0 318 1 5725 107 55 31 chr13 5867200 5868120 -96005049 - MER4-int LTR ERV1 -355 6243 5290 2160 135 3 3 chr13 5868120 5868432 -96004737 + AluSx SINE Alu 1 312 0 2133 123 7 0 chr13 5868521 5868813 -96004356 - AluSx SINE Alu -18 294 1 21 36 0 0 chr13 5869016 5869044 -96004125 + AT_rich Low_complexity Low_complexity 1 28 0 525 268 81 78 chr13 5869109 5869650 -96003519 + HAL1 LINE L1 1198 1740 -767 2235 110 7 0 chr13 5870403 5870695 -96002474 + AluSx SINE Alu 1 294 -18 291 239 43 43 chr13 5870713 5870830 -96002339 + HAL1b LINE L1 795 911 -437 735 243 55 20 chr13 5870838 5871093 -96002076 + L1MB8 LINE L1 5915 6178 0 2456 71 0 0 chr13 5871108 5871402 -96001767 + AluY SINE Alu 1 294 -17 1978 105 35 0 chr13 5872327 5872510 -96000659 - AluSq SINE Alu 0 313 118 348 24 0 0 chr13 5872510 5872551 -96000618 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1978 105 35 0 chr13 5872551 5872673 -96000496 - AluSq SINE Alu -195 118 2 381 303 41 0 chr13 5873955 5874077 -95999092 - MIR SINE MIR -94 168 42 304 261 22 11 chr13 5874082 5874174 -95998995 + MIR SINE MIR 167 259 -3 2392 78 0 0 chr13 5874249 5874542 -95998627 + AluY SINE Alu 1 293 -18 405 271 42 14 chr13 5875165 5875309 -95997860 + MIR SINE MIR 113 260 -2 637 216 0 0 chr13 5875548 5875664 -95997505 + FLAM_C SINE Alu 1 116 -27 579 285 104 10 chr13 5876565 5876758 -95996411 + MIR SINE MIR 26 236 -26 1587 159 100 3 chr13 5876906 5877215 -95995954 - MER2 DNA MER2_type 0 345 7 2314 94 3 0 chr13 5877332 5877631 -95995538 + AluSx SINE Alu 1 300 -12 319 211 253 11 chr13 5878025 5878120 -95995049 + L2 LINE L2 3192 3309 -4 233 294 48 87 chr13 5878255 5878381 -95994788 - MIR SINE MIR -76 132 15 21 57 0 0 chr13 5879625 5879660 -95993509 + AT_rich Low_complexity Low_complexity 1 35 0 2513 66 0 0 chr13 5879683 5879984 -95993185 - AluY SINE Alu -10 301 1 309 232 0 89 chr13 5880637 5880749 -95992420 + MIR SINE MIR 79 180 -82 267 276 238 9 chr13 5880735 5880840 -95992329 - MIR3 SINE MIR -40 168 40 * 2357 77 3 3 chr13 5882051 5882350 -95990819 + AluY SINE Alu 1 299 -12 804 161 0 0 chr13 5882616 5882740 -95990429 - FRAM SINE Alu -16 160 37 939 183 31 101 chr13 5883228 5883953 -95989216 - MER4A LTR ERV1 0 695 1 272 356 44 0 chr13 5884053 5884143 -95989026 - L2 LINE L2 -31 3241 3148 2330 93 3 0 chr13 5884946 5885237 -95987932 + AluSp SINE Alu 1 292 -21 1590 185 49 0 chr13 5885867 5886154 -95987015 + AluJo SINE Alu 1 301 -11 211 260 0 84 chr13 5886453 5886562 -95986607 - L2 LINE L2 -1 3312 3185 191 173 19 0 chr13 5887153 5887205 -95985964 + A-rich Low_complexity Low_complexity 2 54 0 258 32 0 0 chr13 5887283 5887314 -95985855 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 143 0 0 chr13 5887404 5887446 -95985723 + AluS SINE Alu 23 64 -239 240 160 51 40 chr13 5887561 5887736 -95985433 + (CA)n Simple_repeat Simple_repeat 1 177 0 418 147 55 16 chr13 5887800 5888246 -95984923 + (CA)n Simple_repeat Simple_repeat 1 463 0 197 180 52 23 chr13 5888525 5888697 -95984472 + (CA)n Simple_repeat Simple_repeat 2 178 0 396 183 40 23 chr13 5888724 5889033 -95984136 + (CA)n Simple_repeat Simple_repeat 1 314 0 339 243 49 131 chr13 5889197 5889526 -95983643 - L1MC/D LINE L1 -2151 5657 5356 316 121 17 0 chr13 5889588 5889646 -95983523 - AluSp/q SINE Alu -4 299 241 2393 52 0 58 chr13 5890110 5890440 -95982729 - AluY SINE Alu 0 311 1 2358 35 0 67 chr13 5891093 5891406 -95981763 + AluY SINE Alu 1 292 -19 613 163 24 0 chr13 5891407 5891530 -95981639 + L1MA5 LINE L1 6169 6294 -6 1990 255 46 28 chr13 5891549 5892303 -95980866 - L1ME1 LINE L1 -6 6160 5393 3785 93 8 0 chr13 5893076 5893604 -95979565 - L1PB1 LINE L1 0 6151 5620 26 0 0 0 chr13 5893613 5893639 -95979530 + AT_rich Low_complexity Low_complexity 1 26 0 236 248 124 39 chr13 5894780 5894909 -95978260 - Charlie8 DNA MER1_type -2140 277 138 2340 61 41 0 chr13 5894982 5895275 -95977894 + AluY SINE Alu 1 305 -6 26 0 0 0 chr13 5896270 5896296 -95976873 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr13 5896309 5896333 -95976836 + AT_rich Low_complexity Low_complexity 1 24 0 201 231 31 108 chr13 5896568 5896633 -95976536 + L2 LINE L2 3213 3272 0 237 287 96 17 chr13 5896845 5896960 -95976209 + MIR SINE MIR 118 241 -21 700 179 40 104 chr13 5897159 5897360 -95975809 - MIR SINE MIR -8 254 67 294 256 78 0 chr13 5897401 5897491 -95975678 - MIR SINE MIR -36 226 130 863 171 91 6 chr13 5898662 5898838 -95974331 + MIR SINE MIR 44 234 -28 24 0 0 0 chr13 5899070 5899094 -95974075 + AT_rich Low_complexity Low_complexity 1 24 0 2300 103 3 0 chr13 5899427 5899729 -95973440 - AluSq SINE Alu -10 303 1 2090 147 0 22 chr13 5900265 5900584 -95972585 + AluSx SINE Alu 1 312 0 256 224 41 61 chr13 5900599 5900697 -95972472 + L3b LINE CR1 1352 1447 -136 2307 112 0 3 chr13 5900811 5901116 -95972053 - AluSc SINE Alu -2 307 4 21081 121 15 86 chr13 5902904 5907264 -95965905 + L1P LINE L1 12 4064 -2082 1601 69 0 0 chr13 5907271 5907474 -95965695 + L1PA7 LINE L1 5934 6136 -18 2482 102 65 105 chr13 5908407 5909037 -95964132 - MER4B LTR ERV1 0 779 3 3437 184 144 4 chr13 5909273 5909607 -95963562 + L1MC1 LINE L1 21 307 -6119 185 0 0 39 chr13 5909607 5909633 -95963536 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3437 184 144 4 chr13 5909633 5910123 -95963046 + L1MC1 LINE L1 307 961 -5465 9361 202 68 13 chr13 5910152 5915216 -95957953 + L1MC1 LINE L1 1281 6597 -16 26 0 0 0 chr13 5915437 5915463 -95957706 + AT_rich Low_complexity Low_complexity 1 26 0 1986 122 4 0 chr13 5916246 5916517 -95956652 + AluSx SINE Alu 1 272 -40 183 80 0 0 chr13 5916517 5916542 -95956627 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 468 258 88 25 chr13 5917456 5917615 -95955554 - MIR SINE MIR -35 227 59 441 169 36 26 chr13 5917683 5917853 -95955316 + MER3 DNA MER1_type 6 209 0 227 200 44 0 chr13 5917816 5917861 -95955308 - MER3 DNA MER1_type -123 86 40 * 294 95 0 0 chr13 5920204 5920246 -95952923 + (CA)n Simple_repeat Simple_repeat 2 43 0 1602 208 128 2 chr13 5920295 5920709 -95952460 - MER31B LTR ERV1 0 466 1 184 224 122 0 chr13 5920916 5920965 -95952204 - L2 LINE L2 -49 3223 3169 251 225 12 38 chr13 5920976 5921056 -95952113 + L1MC/D LINE L1 5824 5901 -1907 594 224 122 0 chr13 5922349 5922496 -95950673 - MIR SINE MIR -49 213 49 230 262 0 16 chr13 5922594 5922655 -95950514 + CT-rich Low_complexity Low_complexity 2 61 0 222 37 0 0 chr13 5923837 5923864 -95949305 + (TA)n Simple_repeat Simple_repeat 1 27 0 599 297 82 0 chr13 5923879 5924111 -95949058 + MIR SINE MIR 5 255 -7 323 283 99 13 chr13 5925380 5925532 -95947637 + L1M LINE L1 5264 5428 -734 626 290 63 90 chr13 5925536 5925655 -95947514 - L2 LINE L2 0 3313 3192 207 0 0 0 chr13 5925655 5925678 -95947491 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2207 99 17 3 chr13 5925680 5925973 -95947196 - AluSp SINE Alu -16 297 1 626 290 63 90 chr13 5925973 5926361 -95946808 - L2 LINE L2 -122 3191 2817 338 324 179 14 chr13 5926783 5926990 -95946179 - MIR SINE MIR -10 252 12 4607 152 29 51 chr13 5927191 5927856 -95945313 + L1MB8 LINE L1 5099 5726 -452 1413 152 105 99 chr13 5927856 5928218 -95944951 + MLT1A1 LTR MaLR 2 365 0 4607 152 29 51 chr13 5928218 5928662 -95944507 + L1MB8 LINE L1 5726 6178 0 558 292 22 15 chr13 5929569 5929774 -95943395 + MIR SINE MIR 56 262 0 399 316 7 15 chr13 5929972 5930108 -95943061 - MIR SINE MIR -72 190 56 1559 150 8 26 chr13 5930794 5931061 -95942108 + AluJb SINE Alu 39 300 -12 2043 110 3 23 chr13 5931217 5931517 -95941652 + AluSg SINE Alu 1 294 -16 32 0 0 0 chr13 5931518 5931550 -95941619 + AT_rich Low_complexity Low_complexity 1 32 0 5128 159 69 33 chr13 5932041 5933435 -95939734 - L1MB2 LINE L1 -1 6170 4693 614 286 71 96 chr13 5933741 5933848 -95939321 - L1ME4a LINE L1 -74 6047 5939 2368 87 0 3 chr13 5933848 5934146 -95939023 - AluSq SINE Alu -16 297 1 614 286 71 96 chr13 5934146 5934418 -95938751 - L1ME4a LINE L1 -182 5939 5662 2566 56 0 0 chr13 5934418 5934722 -95938447 - AluY SINE Alu -7 304 1 614 286 71 96 chr13 5934722 5935005 -95938164 - L1ME4a LINE L1 -459 5662 5380 25 0 0 0 chr13 5935006 5935031 -95938138 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr13 5935282 5935318 -95937851 + (TG)n Simple_repeat Simple_repeat 1 36 0 216 158 0 0 chr13 5937862 5937900 -95935269 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 290 304 39 10 chr13 5938689 5938791 -95934378 + MIR SINE MIR 38 142 -120 2021 153 3 13 chr13 5939117 5939430 -95933739 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr13 5940217 5940246 -95932923 + AT_rich Low_complexity Low_complexity 1 29 0 1502 163 98 14 chr13 5942207 5942483 -95930686 - AluJb SINE Alu -13 299 1 1689 224 26 5 chr13 5942713 5943142 -95930027 + L1 LINE L1 4899 5336 -810 219 253 23 23 chr13 5943959 5944046 -95929123 + CT-rich Low_complexity Low_complexity 5 91 0 355 245 67 92 chr13 5944831 5945414 -95927755 + HSREP522 Satellite telomeric 1 568 -87 233 219 256 0 chr13 5946812 5946894 -95926275 - MIR SINE MIR -88 174 72 823 256 81 42 chr13 5947100 5947459 -95925710 + L1ME LINE L1 5420 5792 -329 243 343 56 9 chr13 5948720 5948828 -95924341 - L2 LINE L2 -43 3229 3117 917 177 29 34 chr13 5948843 5949018 -95924151 + FAM SINE Alu 1 174 -11 1186 220 59 54 chr13 5949018 5949409 -95923760 - MLT2C2 LTR ERVL -71 393 1 363 191 143 38 chr13 5949501 5949606 -95923563 + L1MC1 LINE L1 6092 6207 -126 232 211 0 35 chr13 5950041 5950098 -95923071 - THE1C LTR MaLR 0 428 374 1949 78 67 11 chr13 5950098 5950387 -95922782 - AluY SINE Alu 0 304 1 1438 111 136 76 chr13 5950387 5950550 -95922619 - THE1C LTR MaLR -40 335 183 1943 157 0 3 chr13 5950550 5950844 -95922325 - AluSx SINE Alu -19 293 1 1438 111 136 76 chr13 5950844 5950996 -95922173 - THE1C LTR MaLR -192 183 1 869 194 62 44 chr13 5951162 5951389 -95921780 - L1MC1 LINE L1 -25 6308 6078 193 327 84 28 chr13 5951613 5951720 -95921449 + L2 LINE L2 3146 3258 -14 1982 183 127 44 chr13 5953521 5954001 -95919168 - MLT2B1 LTR ERVL 0 520 1 261 343 135 6 chr13 5954326 5954504 -95918665 - L2 LINE L2 -862 2452 2252 476 324 143 5 chr13 5955074 5955284 -95917885 + L3 LINE CR1 401 639 -938 531 152 9 38 chr13 5956897 5957002 -95916167 - L1MB3 LINE L1 -7 6176 6075 1736 83 5 0 chr13 5957489 5957707 -95915462 + AluSq SINE Alu 1 219 -94 740 125 0 0 chr13 5957708 5957831 -95915338 + AluSg/x SINE Alu 189 311 0 2090 141 0 0 chr13 5957891 5958181 -95914988 + AluSx SINE Alu 1 290 -22 278 255 255 13 chr13 5960433 5960586 -95912583 + MIR SINE MIR 59 248 -14 3367 208 72 45 chr13 5960921 5961467 -95911702 + L1ME2 LINE L1 4916 5446 -718 1925 140 3 38 chr13 5961467 5961781 -95911388 - AluJb SINE Alu -3 309 7 3367 208 72 45 chr13 5961781 5962425 -95910744 + L1ME2 LINE L1 5446 6155 -9 1128 124 75 0 chr13 5963708 5963894 -95909275 + LTR9B LTR ERV1 445 644 0 1038 47 16 0 chr13 5963936 5964063 -95909106 + HUERS-P3b LTR ERV1 2958 3086 -2131 457 102 0 0 chr13 5964061 5964120 -95909049 + HUERS-P3b LTR ERV1 6086 6144 -1274 * 1253 142 10 0 chr13 5964118 5964315 -95908854 + HUERS-P3b LTR ERV1 8720 8918 -1 3413 119 35 16 chr13 5964315 5964862 -95908307 + LTR9B LTR ERV1 1 557 -87 386 273 284 10 chr13 5966274 5966468 -95906701 - MIR SINE MIR -14 248 2 1491 111 79 14 chr13 5967702 5967918 -95905251 - MER30 DNA MER1_type 0 230 1 22 0 0 0 chr13 5967918 5967940 -95905229 + AT_rich Low_complexity Low_complexity 1 22 0 1717 175 7 13 chr13 5967945 5968248 -95904921 - AluJb SINE Alu -11 301 1 648 260 68 17 chr13 5968274 5968451 -95904718 + MER5A DNA MER1_type 1 186 -3 217 250 94 122 chr13 5969285 5969465 -95903704 - L2 LINE L2 -2 3270 3096 275 157 131 16 chr13 5969528 5969689 -95903480 + MER20 DNA MER1_type 1 219 0 242 232 29 0 chr13 5969931 5970000 -95903169 + LTR67 LTR ERVL 484 554 -3 5151 111 9 5 chr13 5970590 5971328 -95901841 + L1PA13 LINE L1 5423 6163 0 674 159 0 66 chr13 5972330 5972481 -95900688 + L1MB4 LINE L1 6039 6179 -1 246 289 46 30 chr13 5973966 5974128 -95899041 + MIR SINE MIR 36 252 -10 1914 134 0 7 chr13 5975137 5975441 -95897728 + AluSx SINE Alu 1 302 0 1063 224 8 4 chr13 5975507 5975752 -95897417 - AluSq SINE Alu -14 299 54 3116 230 109 52 chr13 5976415 5977567 -95895602 + L2 LINE L2 1175 2406 -908 1441 153 145 0 chr13 5977567 5977822 -95895347 - AluJo SINE Alu -20 292 1 3116 230 109 52 chr13 5977822 5977930 -95895239 + L2 LINE L2 2406 2506 -808 2000 246 135 20 chr13 5977972 5978704 -95894465 + L1ME3 LINE L1 5345 6160 -2 289 262 83 48 chr13 5978718 5978863 -95894306 - L2 LINE L2 -10 3303 3154 345 308 45 32 chr13 5979043 5979199 -95893970 - L2 LINE L2 -483 2831 2674 23 0 0 0 chr13 5979501 5979524 -95893645 + AT_rich Low_complexity Low_complexity 1 23 0 1256 206 4 24 chr13 5980909 5981157 -95892012 + AluJb SINE Alu 38 280 -32 197 178 22 0 chr13 5981214 5981259 -95891910 + (TA)n Simple_repeat Simple_repeat 2 47 0 2017 138 7 0 chr13 5981301 5981605 -95891564 + AluSx SINE Alu 1 306 -6 184 311 87 55 chr13 5982411 5982700 -95890469 + L2 LINE L2 2196 2493 -821 428 242 30 20 chr13 5983149 5983248 -95889921 + L2 LINE L2 3194 3293 -20 2617 155 29 9 chr13 5983694 5984113 -95889056 + MSTA LTR MaLR 2 428 0 2153 111 9 29 chr13 5984156 5984472 -95888697 - AluSx SINE Alu 0 312 3 2398 72 3 0 chr13 5984486 5984790 -95888379 - AluY SINE Alu -6 305 1 399 284 0 0 chr13 5985988 5986083 -95887086 - MER103 DNA DNA -52 114 20 1057 227 95 122 chr13 5986803 5987429 -95885740 - L1ME3A LINE L1 -205 5965 5334 1972 134 25 0 chr13 5987457 5987734 -95885435 + AluSx SINE Alu 1 284 -28 2421 145 6 6 chr13 5987836 5988201 -95884968 + MER47A DNA MER2_type 2 366 0 2303 110 0 7 chr13 5988246 5988556 -95884613 + AluSx SINE Alu 1 308 -4 2117 127 0 0 chr13 5989633 5989933 -95883236 - AluSg SINE Alu -10 300 1 1041 150 0 24 chr13 5989935 5990102 -95883067 - AluSg/x SINE Alu -16 294 132 631 209 32 73 chr13 5990164 5990384 -95882785 - L2 LINE L2 0 3313 3103 294 337 0 12 chr13 5991362 5991445 -95881724 + L3 LINE CR1 1387 1468 -109 304 271 22 66 chr13 5991666 5991847 -95881322 + L2 LINE L2 2704 2876 -438 4553 183 87 13 chr13 5991971 5992991 -95880178 - L1MC3 LINE L1 0 7785 6690 2145 112 14 0 chr13 5994837 5995132 -95878037 + AluSx SINE Alu 1 299 -13 200 306 14 56 chr13 5995191 5995263 -95877906 - MIR SINE MIR -145 117 49 356 300 121 14 chr13 5996806 5997029 -95876140 + MIR SINE MIR 1 247 -15 457 303 0 16 chr13 5997106 5997228 -95875941 + L2 LINE L2 3194 3313 0 187 176 0 0 chr13 5997234 5997268 -95875901 + L2 LINE L2 3280 3313 0 2272 109 3 6 chr13 5998035 5998347 -95874822 - AluSq SINE Alu -2 311 1 3083 109 78 52 chr13 5998804 5999319 -95873850 - MER1A DNA MER1_type -1 528 1 292 319 83 35 chr13 6000696 6000840 -95872329 + MIR3 SINE MIR 1 151 -57 1538 206 99 0 chr13 6002279 6002634 -95870535 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr13 6002795 6002817 -95870352 + AT_rich Low_complexity Low_complexity 1 22 0 2161 131 0 6 chr13 6003735 6004048 -95869121 + AluSx SINE Alu 1 311 -1 1397 202 24 14 chr13 6006461 6006748 -95866421 - AluJo SINE Alu -22 290 1 384 187 121 22 chr13 6006854 6006945 -95866224 + Tigger2 DNA MER2_type 1 100 -2618 829 212 0 50 chr13 6006947 6007126 -95866043 - MER8 DNA MER2_type -62 177 8 1500 175 93 10 chr13 6007168 6007459 -95865710 + MER44D DNA MER2_type 20 604 -5 195 69 0 0 chr13 6008461 6008490 -95864679 + (TC)n Simple_repeat Simple_repeat 1 29 0 1789 234 84 44 chr13 6008645 6009214 -95863955 + MLT1E LTR MaLR 1 592 -1 2442 78 0 7 chr13 6009347 6009643 -95863526 - AluSg SINE Alu -16 294 1 28 29 0 0 chr13 6009648 6009683 -95863486 + AT_rich Low_complexity Low_complexity 1 35 0 567 236 102 77 chr13 6009735 6010048 -95863121 + MLT1J LTR MaLR 3 323 -188 1575 158 12 71 chr13 6010325 6010647 -95862522 + AluJb SINE Alu 1 303 -9 1659 156 35 38 chr13 6011654 6012024 -95861145 + MSTC LTR MaLR 18 426 -2 494 271 98 33 chr13 6012091 6012305 -95860864 + L2 LINE L2 2827 3054 -259 351 0 0 0 chr13 6013422 6013461 -95859708 + (CA)n Simple_repeat Simple_repeat 2 40 0 494 138 0 0 chr13 6014772 6014859 -95858310 - L1MB7 LINE L1 -19 6165 6079 4539 185 67 21 chr13 6014869 6016675 -95856494 - L1MB7 LINE L1 -21 6163 4441 2255 121 0 13 chr13 6016675 6016989 -95856180 - AluSq SINE Alu -3 310 1 4539 185 67 21 chr13 6016989 6017000 -95856169 - L1MB7 LINE L1 -1743 4441 4432 423 0 0 0 chr13 6017000 6017047 -95856122 + (TG)n Simple_repeat Simple_repeat 2 48 0 4539 185 67 21 chr13 6017047 6017294 -95855875 - L1MB7 LINE L1 -1752 4432 3999 204 67 0 0 chr13 6017601 6017631 -95855538 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 446 233 36 131 chr13 6018644 6018919 -95854250 - MER112 DNA MER1_type -11 249 1 359 174 47 12 chr13 6019394 6019480 -95853689 + L1MD3 LINE L1 7829 7917 -78 22 0 0 0 chr13 6020214 6020236 -95852933 + AT_rich Low_complexity Low_complexity 1 22 0 324 267 158 17 chr13 6020619 6020739 -95852430 - MIR SINE MIR 0 262 126 380 341 82 27 chr13 6021021 6021352 -95851817 + L1 LINE L1 4081 4429 -1717 40546 55 4 6 chr13 6021363 6027531 -95845638 + L1PA5 LINE L1 1 6154 0 1671 177 0 30 chr13 6027839 6028138 -95845031 + AluJb SINE Alu 10 299 -13 887 180 34 26 chr13 6029077 6029299 -95843870 - MLT1A1 LTR MaLR -2 430 162 287 25 25 0 chr13 6029299 6029339 -95843830 + (GA)n Simple_repeat Simple_repeat 1 41 0 421 160 21 11 chr13 6029366 6029460 -95843709 - MLT1A1 LTR MaLR -213 152 58 306 269 97 21 chr13 6029939 6030084 -95843085 - L1ME4a LINE L1 0 6121 5966 726 300 83 24 chr13 6030193 6030566 -95842603 - MLT1I LTR MaLR -14 395 1 1360 142 15 0 chr13 6030804 6031001 -95842168 - AluJo SINE Alu -112 200 1 5412 247 113 38 chr13 6031790 6032273 -95840896 + L2 LINE L2 201 646 -2668 1630 206 100 30 chr13 6032273 6032744 -95840425 + MLT1D LTR MaLR 1 504 -1 5412 247 113 38 chr13 6032744 6034296 -95838873 + L2 LINE L2 646 2408 -906 1454 153 145 0 chr13 6034296 6034551 -95838618 - AluJo SINE Alu -20 292 1 5412 247 113 38 chr13 6034551 6034659 -95838510 + L2 LINE L2 2408 2506 -808 1683 246 135 20 chr13 6034701 6035433 -95837736 + L1ME3 LINE L1 5345 6160 -2 302 262 83 48 chr13 6035447 6035592 -95837577 - L2 LINE L2 -10 3303 3154 343 308 45 32 chr13 6035772 6035928 -95837241 - L2 LINE L2 -483 2831 2674 23 0 0 0 chr13 6036230 6036253 -95836916 + AT_rich Low_complexity Low_complexity 1 23 0 1287 206 4 24 chr13 6037638 6037886 -95835283 + AluJb SINE Alu 38 280 -32 197 178 22 0 chr13 6037943 6037988 -95835181 + (TA)n Simple_repeat Simple_repeat 2 47 0 2026 138 7 0 chr13 6038030 6038334 -95834835 + AluSx SINE Alu 1 306 -6 180 311 87 55 chr13 6039141 6039430 -95833739 + L2 LINE L2 2196 2493 -821 431 242 30 20 chr13 6039879 6039978 -95833191 + L2 LINE L2 3194 3293 -20 2421 155 29 9 chr13 6040424 6040843 -95832326 + MSTA LTR MaLR 2 428 0 2160 111 9 29 chr13 6040886 6041202 -95831967 - AluSx SINE Alu 0 312 3 2375 72 3 0 chr13 6041216 6041520 -95831649 - AluY SINE Alu -6 305 1 358 284 0 0 chr13 6042718 6042813 -95830356 - MER103 DNA DNA -52 114 20 846 229 86 99 chr13 6043549 6044152 -95829017 - L1ME4a LINE L1 -219 5951 5350 1977 134 25 0 chr13 6044187 6044464 -95828705 + AluSx SINE Alu 1 284 -28 2235 145 6 6 chr13 6044566 6044931 -95828238 + MER47A DNA MER2_type 2 366 0 2052 113 7 23 chr13 6044976 6045307 -95827862 + AluSx SINE Alu 1 312 0 356 278 106 39 chr13 6045307 6045638 -95827531 - L1ME4a LINE L1 -1088 5058 4706 768 318 10 26 chr13 6046776 6047078 -95826091 + MLT1K LTR MaLR 288 584 -4 281 308 101 40 chr13 6047184 6047382 -95825787 + MIR SINE MIR 41 250 -12 224 296 0 14 chr13 6047420 6047491 -95825678 + MIR SINE MIR 187 256 -6 2304 67 27 3 chr13 6048290 6048587 -95824582 + AluY SINE Alu 1 304 -7 441 0 0 0 chr13 6048611 6048660 -95824509 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 21 36 0 0 chr13 6049942 6049970 -95823199 + AT_rich Low_complexity Low_complexity 1 28 0 2502 56 0 3 chr13 6049990 6050293 -95822876 - AluY SINE Alu -9 302 1 251 252 26 126 chr13 6051176 6051245 -95821924 + MIR SINE MIR 82 130 -132 2334 96 3 0 chr13 6051245 6051537 -95821632 - AluSg SINE Alu -17 293 1 251 252 26 126 chr13 6051537 6051618 -95821551 + MIR SINE MIR 130 217 -45 21 36 0 0 chr13 6051940 6051968 -95821201 + AT_rich Low_complexity Low_complexity 1 28 0 1017 215 94 97 chr13 6053180 6053928 -95819241 + LTR8A LTR ERV1 1 727 0 299 285 138 79 chr13 6053930 6054299 -95818870 - L2 LINE L2 0 3272 2882 938 187 20 5 chr13 6054370 6054573 -95818596 + MER72 LTR ERV1 1 206 -516 543 189 0 19 chr13 6054599 6054705 -95818464 + L1MD2 LINE L1 6243 6346 -13 709 169 4 9 chr13 6055193 6055444 -95817725 + MER2 DNA MER2_type 1 284 -61 21 0 0 0 chr13 6055475 6055496 -95817673 + AT_rich Low_complexity Low_complexity 1 21 0 806 175 7 28 chr13 6055515 6055658 -95817511 - FRAM SINE Alu -36 140 1 453 169 0 0 chr13 6055658 6055729 -95817440 + MER2 DNA MER2_type 275 345 0 2436 61 0 17 chr13 6056158 6056455 -95816714 - AluY SINE Alu -19 292 1 484 241 71 71 chr13 6056771 6057000 -95816169 + MIR SINE MIR 25 262 0 1123 149 44 6 chr13 6057212 6057393 -95815776 - AluSg/x SINE Alu -14 296 109 956 149 51 17 chr13 6057493 6057668 -95815501 - AluSx SINE Alu -129 183 3 21 36 0 0 chr13 6057671 6057699 -95815470 + AT_rich Low_complexity Low_complexity 1 28 0 963 289 61 42 chr13 6058057 6058646 -95814523 - L1MCa LINE L1 -4865 2076 1477 734 275 143 13 chr13 6058818 6059203 -95813966 - L1MCa LINE L1 -5963 460 26 195 42 0 0 chr13 6059271 6059295 -95813874 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 641 203 165 21 chr13 6059420 6059657 -95813512 + MER31A LTR ERV1 215 485 0 22 0 0 0 chr13 6059956 6059978 -95813191 + AT_rich Low_complexity Low_complexity 1 22 0 2064 136 27 54 chr13 6060154 6060196 -95812973 - MER57A LTR ERV1 -1 402 360 1916 125 0 30 chr13 6060196 6060492 -95812677 + AluSx SINE Alu 1 287 -25 258 32 0 0 chr13 6060499 6060530 -95812639 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2064 136 27 54 chr13 6060530 6060885 -95812284 - MER57A LTR ERV1 -49 354 8 538 230 59 54 chr13 6060937 6061159 -95812010 + MER46C DNA MER2_type 3 225 -113 743 182 97 32 chr13 6061197 6061622 -95811547 + LTR54B LTR ERV1 2 490 -8 266 262 36 12 chr13 6061629 6061713 -95811456 + MER46C DNA MER2_type 252 337 -1 21 0 0 0 chr13 6061760 6061781 -95811388 + AT_rich Low_complexity Low_complexity 1 21 0 2281 117 0 3 chr13 6061788 6062095 -95811074 + AluSx SINE Alu 1 306 -6 269 220 110 9 chr13 6062372 6062481 -95810688 - MER103 DNA DNA -45 121 2 1083 173 15 10 chr13 6063703 6063905 -95809264 + MER2 DNA MER2_type 8 210 -135 660 83 0 0 chr13 6064951 6065035 -95808134 - AluSg/x SINE Alu -16 294 211 262 275 266 9 chr13 6065035 6065144 -95808025 + MER5A DNA MER1_type 49 185 -4 191 324 15 0 chr13 6065088 6065156 -95808013 - MER5A DNA MER1_type -114 75 7 * 243 288 45 0 chr13 6065342 6065408 -95807761 + MIR SINE MIR 124 192 -70 267 216 13 150 chr13 6065509 6065608 -95807561 - MER94 DNA DNA -2 132 60 1603 196 4 0 chr13 6065608 6065889 -95807280 + AluJo SINE Alu 1 282 -30 267 216 13 150 chr13 6065889 6065942 -95807227 - MER94 DNA DNA -74 60 1 208 191 48 0 chr13 6065943 6065985 -95807184 - MIR SINE MIR -2 260 217 337 280 115 37 chr13 6068103 6068670 -95804499 + L1ME2 LINE L1 2322 2932 -3214 1718 139 57 36 chr13 6068903 6069235 -95803934 - MER2 DNA MER2_type 0 345 7 1960 273 76 56 chr13 6069243 6069759 -95803410 + L1ME2 LINE L1 3221 3725 -2421 1753 130 4 0 chr13 6069759 6070012 -95803157 + AluSx SINE Alu 49 302 -10 1960 273 76 56 chr13 6070012 6071288 -95801881 + L1ME2 LINE L1 3725 5049 -1097 283 153 15 4 chr13 6071294 6071497 -95801672 + AluJo SINE Alu 1 295 -6 751 193 0 15 chr13 6071716 6071851 -95801318 + FLAM_A SINE Alu 1 133 0 645 244 141 53 chr13 6071919 6072410 -95800759 + L1ME2 LINE L1 5406 5938 -224 369 302 173 56 chr13 6072597 6072938 -95800231 - L3 LINE CR1 -118 1459 1079 1488 210 89 23 chr13 6073462 6073891 -95799278 - MSTB2 LTR MaLR 0 457 1 2422 123 40 38 chr13 6074057 6074480 -95798689 + MSTC LTR MaLR 1 424 -4 655 287 171 6 chr13 6074682 6075016 -95798153 - L3 LINE CR1 -523 1054 666 30 0 0 0 chr13 6075290 6075320 -95797849 + AT_rich Low_complexity Low_complexity 1 30 0 219 354 23 31 chr13 6076510 6076640 -95796529 + L2 LINE L2 3180 3308 -5 2138 116 14 0 chr13 6077077 6077371 -95795798 - AluSx SINE Alu -9 303 6 317 172 62 0 chr13 6077990 6078054 -95795115 + MIR SINE MIR 123 190 -72 21 0 0 0 chr13 6079988 6080009 -95793160 + AT_rich Low_complexity Low_complexity 1 21 0 215 222 0 79 chr13 6080127 6080190 -95792979 - MIR SINE MIR -7 255 198 1898 155 0 13 chr13 6080200 6080503 -95792666 - AluJb SINE Alu -13 299 1 548 282 74 28 chr13 6080576 6080792 -95792377 - MIR SINE MIR -25 237 12 195 339 89 40 chr13 6080819 6080943 -95792226 + MIR3 SINE MIR 14 143 -65 398 276 125 0 chr13 6081318 6081470 -95791699 + MIR SINE MIR 92 262 0 462 254 8 16 chr13 6082373 6082495 -95790674 - L2 LINE L2 0 3313 3193 320 125 18 0 chr13 6084320 6084376 -95788793 - LTR54 LTR ERV1 -38 472 416 25 0 0 0 chr13 6084389 6084414 -95788755 + AT_rich Low_complexity Low_complexity 1 25 0 180 236 83 42 chr13 6084698 6084770 -95788399 + L2 LINE L2 3198 3272 0 2400 73 7 7 chr13 6084873 6085175 -95787994 + AluSg SINE Alu 1 302 -8 268 302 95 28 chr13 6085709 6085961 -95787208 - L2 LINE L2 -624 2690 2422 1018 219 73 0 chr13 6086376 6086623 -95786546 + L1MCa LINE L1 19 283 -6143 509 247 84 6 chr13 6087415 6087581 -95785588 - MER97a DNA MER1_type? -715 179 1 422 252 53 27 chr13 6087669 6087852 -95785317 - L1ME LINE L1 -464 5657 5473 800 110 31 16 chr13 6087960 6088087 -95785082 - AluSg/x SINE Alu 0 312 184 191 255 0 20 chr13 6088375 6088426 -95784743 - L2 LINE L2 -580 2734 2685 1683 114 82 7 chr13 6088492 6088798 -95784371 - MER46B DNA MER2_type -1 235 32 243 0 0 0 chr13 6088879 6088906 -95784263 + (ATG)n Simple_repeat Simple_repeat 1 27 0 511 286 81 5 chr13 6088907 6089092 -95784077 - MIR SINE MIR -5 257 59 181 249 45 141 chr13 6089940 6090117 -95783052 - MIR SINE MIR -50 212 53 * 308 299 62 10 chr13 6090105 6090202 -95782967 + MIR SINE MIR 47 148 -114 234 325 0 0 chr13 6093520 6093600 -95779569 + L1MC4 LINE L1 7190 7269 -773 933 202 16 21 chr13 6093738 6093926 -95779243 - AluJo SINE Alu -7 305 119 381 255 35 80 chr13 6094004 6094467 -95778702 + L1MC5 LINE L1 7333 7774 -187 6858 133 44 15 chr13 6094469 6095613 -95777556 + Tigger3b DNA MER2_type 2 1184 -1844 2252 102 0 23 chr13 6095613 6095916 -95777253 - AluSg SINE Alu -14 296 1 6858 133 44 15 chr13 6095916 6095966 -95777203 + Tigger3b DNA MER2_type 1184 1231 0 253 323 0 0 chr13 6095980 6096045 -95777124 + polypurine Low_complexity Low_complexity 2 66 0 2254 125 0 0 chr13 6096278 6096589 -95776580 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr13 6097899 6097930 -95775239 + AT_rich Low_complexity Low_complexity 1 31 0 2275 101 0 0 chr13 6098102 6098390 -95774779 - AluSx SINE Alu -24 288 1 21 82 0 0 chr13 6098495 6098544 -95774625 + AT_rich Low_complexity Low_complexity 1 49 0 491 245 19 57 chr13 6098556 6098715 -95774454 - L1ME1 LINE L1 -1 6183 6031 183 343 49 10 chr13 6099289 6099391 -95773778 - L2 LINE L2 -221 3092 2987 189 226 38 0 chr13 6099474 6099527 -95773642 - L2 LINE L2 -620 2694 2640 27 29 0 0 chr13 6099634 6099668 -95773501 + AT_rich Low_complexity Low_complexity 1 34 0 2194 133 0 10 chr13 6101822 6102124 -95771045 + AluSx SINE Alu 1 299 -13 2034 132 10 10 chr13 6104046 6104342 -95768827 - AluSx SINE Alu -16 296 1 1219 208 148 0 chr13 6104491 6104809 -95768360 - MER47A DNA MER2_type 0 366 2 789 264 74 4 chr13 6105074 6105305 -95767864 - MIR SINE MIR -4 258 12 2747 89 14 5 chr13 6106949 6107319 -95765850 + THE1C LTR MaLR 3 375 0 1986 138 10 0 chr13 6107923 6108213 -95764956 - AluSx SINE Alu -19 293 1 1029 296 101 41 chr13 6108329 6108965 -95764204 + L2 LINE L2 2085 2758 -556 9424 205 25 18 chr13 6108973 6110124 -95763045 - L1MB4 LINE L1 0 6180 5038 1660 176 47 4 chr13 6110124 6110402 -95762767 - AluJo SINE Alu -22 290 1 9424 205 25 18 chr13 6110402 6112742 -95760427 - L1MB4 LINE L1 -1142 5038 2669 2308 157 38 8 chr13 6112995 6113472 -95759697 + L1MB5 LINE L1 5684 6174 0 189 0 0 0 chr13 6114552 6114573 -95758596 + (T)n Simple_repeat Simple_repeat 1 21 0 211 378 12 24 chr13 6114624 6114706 -95758463 + MIR SINE MIR 20 100 -162 297 278 156 0 chr13 6115548 6115638 -95757531 - L2 LINE L2 0 3313 3210 279 253 153 63 chr13 6115654 6116009 -95757160 - MLT1J2 LTR MaLR -3 488 125 448 251 60 51 chr13 6116097 6116512 -95756657 - L2 LINE L2 -125 3188 2230 218 350 87 0 chr13 6117428 6117531 -95755638 + MIR SINE MIR 35 146 -62 293 47 23 0 chr13 6118460 6118503 -95754666 + (TTTTTG)n Simple_repeat Simple_repeat 2 45 0 1333 179 22 65 chr13 6120159 6120407 -95752762 + MER33 DNA MER1_type 2 234 -2351 724 191 125 0 chr13 6120407 6120559 -95752610 - FAM SINE Alu 0 175 5 1333 179 22 65 chr13 6120559 6120634 -95752535 + MER33 DNA MER1_type 234 311 -13 226 260 213 7 chr13 6120966 6121116 -95752053 - MIR SINE MIR -80 182 2 2436 141 47 30 chr13 6122062 6122212 -95750957 - Tigger2a DNA MER2_type -2274 434 288 2298 99 3 0 chr13 6122212 6122515 -95750654 - AluSg SINE Alu -6 304 1 2436 141 47 30 chr13 6122515 6122791 -95750378 - Tigger2a DNA MER2_type -2420 288 1 21 71 0 0 chr13 6123559 6123601 -95749568 + AT_rich Low_complexity Low_complexity 1 42 0 13645 166 23 3 chr13 6123758 6127070 -95746099 - L1PA14 LINE L1 -4 6157 2790 1420 175 72 0 chr13 6127437 6127700 -95745469 - MER7A DNA MER2_type -65 281 2 4408 206 70 38 chr13 6128188 6129387 -95743782 - L1MC4 LINE L1 0 8042 6806 237 83 0 0 chr13 6129762 6129798 -95743371 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 69 0 0 chr13 6129832 6129861 -95743308 + (TA)n Simple_repeat Simple_repeat 2 30 0 1413 161 4 11 chr13 6130263 6130524 -95742645 - L1MB3 LINE L1 -8 6175 5917 23 33 0 0 chr13 6132149 6132179 -95740990 + AT_rich Low_complexity Low_complexity 1 30 0 693 143 0 24 chr13 6132896 6133022 -95740147 - FRAM SINE Alu -5 171 49 774 93 0 70 chr13 6134458 6134587 -95738582 + FRAM SINE Alu 43 162 -14 493 168 8 130 chr13 6138911 6139042 -95734127 + FLAM_A SINE Alu 8 122 -20 4450 117 92 47 chr13 6139705 6140492 -95732677 - LTR12 LTR ERV1 0 826 5 1964 199 95 28 chr13 6140507 6141074 -95732095 - pTR5 LTR ERV1 -1093 1345 741 29 0 0 0 chr13 6141182 6141211 -95731958 + AT_rich Low_complexity Low_complexity 1 29 0 1314 113 128 93 chr13 6141211 6141468 -95731701 - AluSx SINE Alu -23 289 24 1483 185 14 20 chr13 6142369 6142661 -95730508 + AluJo SINE Alu 1 290 -22 428 232 143 76 chr13 6144078 6144483 -95728686 + MER4C LTR ERV1 1 608 -91 4049 96 9 5 chr13 6144483 6145035 -95728134 + MER41A LTR ERV1 1 554 0 3954 141 61 21 chr13 6145035 6145733 -95727436 + MER41A-int LTR ERV1 1 633 -5313 * 10627 107 35 21 chr13 6145705 6148765 -95724404 + MER41A-int LTR ERV1 2606 5944 -2 4053 112 4 0 chr13 6148765 6149317 -95723852 + MER41A LTR ERV1 1 554 0 298 160 85 53 chr13 6149317 6149411 -95723758 + MER4C LTR ERV1 367 463 -2 6373 138 41 65 chr13 6149739 6150081 -95723088 + Tigger3b DNA MER2_type 1 350 -2678 2392 91 0 0 chr13 6150081 6150378 -95722791 + AluSx SINE Alu 2 298 -14 6373 138 41 65 chr13 6150378 6150783 -95722386 + Tigger3b DNA MER2_type 350 763 -2265 2390 92 0 0 chr13 6150783 6151077 -95722092 + AluY SINE Alu 1 294 -17 6373 138 41 65 chr13 6151077 6151584 -95721585 + Tigger3b DNA MER2_type 763 1226 -5 237 300 100 15 chr13 6151648 6151778 -95721391 - MIR SINE MIR -56 206 66 180 319 0 14 chr13 6151812 6151881 -95721288 - MIR3 SINE MIR -129 79 12 2201 159 54 7 chr13 6152148 6152556 -95720613 + L1MB3 LINE L1 5749 6175 -8 229 145 15 0 chr13 6152680 6152722 -95720447 - MIR3 SINE MIR -54 154 111 2142 121 0 0 chr13 6153096 6153376 -95719793 + AluSx SINE Alu 1 280 -32 287 147 15 147 chr13 6153836 6153904 -95719265 + AluS SINE Alu 2 60 -248 421 202 101 8 chr13 6154130 6154249 -95718920 + L1MA10 LINE L1 6205 6334 0 2495 61 0 0 chr13 6154405 6154700 -95718469 + AluY SINE Alu 1 295 -16 387 263 94 58 chr13 6154703 6155227 -95717942 + L1MEc LINE L1 2049 2560 -3655 3315 157 52 7 chr13 6155246 6155846 -95717323 + LTR24C LTR ERV1 1 627 -8 313 290 109 11 chr13 6155925 6156108 -95717061 + L1M4 LINE L1 4577 4777 -1369 3932 91 28 2 chr13 6156110 6156650 -95716519 - MER41A LTR ERV1 0 554 1 761 259 20 51 chr13 6156750 6157105 -95716064 + L1M4 LINE L1 4918 5261 -885 183 80 0 0 chr13 6157328 6157353 -95715816 + (TA)n Simple_repeat Simple_repeat 1 25 0 2650 18 0 0 chr13 6157352 6157660 -95715509 - AluY SINE Alu 0 308 1 354 231 88 27 chr13 6158721 6158868 -95714301 + MER45A DNA AcHobo 3 158 -20 1167 144 0 21 chr13 6159828 6160016 -95713153 + Tigger1 DNA MER2_type 22 205 -2213 1252 169 5 5 chr13 6160026 6160239 -95712930 - AluJo SINE Alu -15 297 85 260 250 0 0 chr13 6160239 6160287 -95712882 - AluJb SINE Alu -52 250 203 * 13460 116 54 30 chr13 6160260 6161159 -95712010 + Tigger1 DNA MER2_type 165 1041 -1377 2381 77 3 7 chr13 6161159 6161459 -95711710 - AluSc SINE Alu -10 299 1 13460 116 54 30 chr13 6161459 6162418 -95710751 + Tigger1 DNA MER2_type 1041 2087 -331 2342 92 0 7 chr13 6162418 6162713 -95710456 - AluSx SINE Alu -19 293 1 13460 116 54 30 chr13 6162713 6163054 -95710115 + Tigger1 DNA MER2_type 2087 2418 0 184 366 108 48 chr13 6163665 6163998 -95709171 - L3b LINE CR1 -85 1498 1146 240 262 48 48 chr13 6165321 6165405 -95707764 - L2 LINE L2 -1 3271 3188 306 247 37 0 chr13 6165669 6165750 -95707419 + MIR SINE MIR 69 152 -110 652 210 120 30 chr13 6165754 6165921 -95707248 + AluJo SINE Alu 2 183 -129 204 320 0 13 chr13 6165925 6166000 -95707169 + MIR SINE MIR 189 262 0 459 295 29 6 chr13 6166706 6166879 -95706290 - L1MB3 LINE L1 0 6183 6007 506 97 138 0 chr13 6166963 6167086 -95706083 - L1PA8 LINE L1 -1 6153 5991 1221 175 185 9 chr13 6167129 6167412 -95705757 - L1MA5A LINE L1 -10 6287 5943 364 289 75 23 chr13 6169240 6169413 -95703756 - MIR SINE MIR -79 183 2 977 221 35 0 chr13 6169598 6169797 -95703372 + MER63A DNA MER1_type 5 210 0 750 259 4 98 chr13 6169824 6169889 -95703280 + MIR SINE MIR 22 92 -170 1882 110 8 4 chr13 6169889 6170153 -95703016 - AluSx SINE Alu -27 285 21 750 259 4 98 chr13 6170153 6170342 -95702827 + MIR SINE MIR 92 252 -10 184 135 19 19 chr13 6170450 6170502 -95702667 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 799 276 103 49 chr13 6170613 6170799 -95702370 + L2 LINE L2 2921 3095 -218 1534 180 48 45 chr13 6170799 6171110 -95702059 + AluJo SINE Alu 1 312 0 799 276 103 49 chr13 6171110 6171292 -95701877 + L2 LINE L2 3095 3309 -4 2271 92 3 0 chr13 6171496 6171778 -95701391 - AluSp SINE Alu -25 288 6 2409 268 79 56 chr13 6171916 6172678 -95700491 - MLT-int LTR MaLR -376 1359 581 192 40 0 0 chr13 6172693 6172718 -95700451 + (CA)n Simple_repeat Simple_repeat 2 26 0 263 253 0 63 chr13 6172726 6172821 -95700348 + L1MC4 LINE L1 6615 6703 -1339 208 218 0 73 chr13 6172821 6172876 -95700293 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 242 140 0 105 chr13 6172880 6172937 -95700232 - L1MC4 LINE L1 -1340 6702 6652 244 276 46 11 chr13 6172959 6173046 -95700123 - L1MC4 LINE L1 -1339 6703 6614 516 225 0 0 chr13 6173047 6173176 -95699993 + (TA)n Simple_repeat Simple_repeat 2 130 0 1549 197 10 10 chr13 6174291 6174601 -95698568 + AluJo SINE Alu 1 310 -2 1647 137 27 57 chr13 6174604 6174904 -95698265 + AluSq SINE Alu 1 291 -22 4728 165 45 49 chr13 6174906 6175962 -95697207 + L1 LINE L1 3889 4940 -1206 198 191 0 0 chr13 6176065 6176107 -95697062 + GA-rich Low_complexity Low_complexity 4 45 0 1231 56 0 0 chr13 6176171 6176313 -95696856 + AluY SINE Alu 1 142 -169 180 0 0 0 chr13 6176316 6176336 -95696833 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr13 6176494 6176515 -95696654 + AT_rich Low_complexity Low_complexity 1 21 0 2292 125 0 0 chr13 6176737 6177049 -95696120 + AluSx SINE Alu 1 312 0 32 26 0 0 chr13 6177273 6177312 -95695857 + AT_rich Low_complexity Low_complexity 1 39 0 527 164 52 124 chr13 6178561 6178838 -95694331 - MER66A LTR ERV1 -174 354 163 44 84 0 0 chr13 6179047 6179154 -95694015 + AT_rich Low_complexity Low_complexity 1 107 0 1204 180 0 42 chr13 6179495 6179734 -95693435 + AluJo SINE Alu 84 312 0 463 70 14 0 chr13 6180555 6180626 -95692543 + AluSc SINE Alu 236 307 -2 250 240 0 0 chr13 6181657 6181707 -95691462 + MIR SINE MIR 13 62 -200 * 524 244 7 30 chr13 6181702 6181837 -95691332 + L2 LINE L2 3181 3312 -1 213 323 0 0 chr13 6181862 6181927 -95691242 + MIR SINE MIR 195 259 -3 231 350 65 24 chr13 6182305 6182428 -95690741 - L2 LINE L2 -185 3087 2960 230 347 45 40 chr13 6182617 6182793 -95690376 - L2 LINE L2 -456 2858 2682 185 0 40 0 chr13 6182794 6182819 -95690350 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 970 133 27 0 chr13 6183087 6183237 -95689932 - MER5A DNA MER1_type -35 154 1 2226 95 113 9 chr13 6185466 6185793 -95687376 + MER46B DNA MER2_type 1 236 0 2023 130 0 14 chr13 6186586 6186879 -95686290 + AluSx SINE Alu 11 299 -13 2235 111 0 3 chr13 6187799 6188097 -95685072 - AluSx SINE Alu -15 297 1 1659 268 180 23 chr13 6188585 6189825 -95683344 + L2 LINE L2 1891 3312 -1 211 281 67 11 chr13 6189948 6190037 -95683132 + MIR SINE MIR 118 211 -51 38 0 0 0 chr13 6190048 6190086 -95683083 + AT_rich Low_complexity Low_complexity 1 38 0 223 322 42 42 chr13 6190309 6190452 -95682717 - L2 LINE L2 -228 3044 2902 33 90 0 0 chr13 6192434 6192523 -95680646 + AT_rich Low_complexity Low_complexity 1 89 0 2335 105 0 0 chr13 6192650 6192955 -95680214 + AluSx SINE Alu 2 306 -6 822 167 43 0 chr13 6193020 6193158 -95680011 + FRAM SINE Alu 4 147 -29 619 83 12 12 chr13 6194307 6194391 -95678778 + AluS SINE Alu 2 85 -228 213 185 46 46 chr13 6195351 6195416 -95677753 + MIR SINE MIR 143 207 -55 321 212 156 56 chr13 6196176 6196302 -95676867 + MIR3 SINE MIR 69 207 -1 315 0 0 0 chr13 6196882 6196917 -95676252 + (CA)n Simple_repeat Simple_repeat 2 36 0 533 209 143 33 chr13 6197482 6197692 -95675477 - L1ME4a LINE L1 -82 6039 5807 304 316 53 0 chr13 6198009 6198123 -95675046 - MIR SINE MIR -34 228 109 304 224 0 126 chr13 6198230 6198404 -95674765 - L1 LINE L1 -773 5373 5222 23 33 0 0 chr13 6198545 6198575 -95674594 + AT_rich Low_complexity Low_complexity 1 30 0 293 285 71 52 chr13 6198588 6198956 -95674213 - L1 LINE L1 -1197 4949 4575 324 226 96 26 chr13 6199205 6199320 -95673849 + MER103 DNA DNA 43 165 -1 23 33 0 0 chr13 6199652 6199682 -95673487 + AT_rich Low_complexity Low_complexity 1 30 0 851 282 152 0 chr13 6200600 6200923 -95672246 - L2 LINE L2 -19 3294 2923 186 43 0 0 chr13 6201211 6201234 -95671935 + (TTCC)n Simple_repeat Simple_repeat 1 23 0 1121 167 0 36 chr13 6201235 6201427 -95671742 - AluJb SINE Alu -5 307 123 247 326 70 0 chr13 6201450 6201536 -95671633 + MIR SINE MIR 21 112 -150 264 223 107 27 chr13 6203115 6203227 -95669942 - MIR SINE MIR -55 207 87 1292 104 6 0 chr13 6203776 6203959 -95669210 - AluY SINE Alu -3 308 125 1719 181 52 6 chr13 6205131 6205457 -95667712 + MER2 DNA MER2_type 2 342 -2 693 174 91 0 chr13 6206611 6206732 -95666437 + AluJ SINE Alu 2 133 -169 209 159 23 0 chr13 6206759 6206803 -95666366 + GA-rich Low_complexity Low_complexity 1 45 0 2087 88 63 0 chr13 6206817 6207102 -95666067 + AluSq SINE Alu 1 303 -10 982 169 7 0 chr13 6207102 6207256 -95665913 + AluJ SINE Alu 134 288 -24 200 337 48 12 chr13 6207299 6207382 -95665787 - L2 LINE L2 -5 3308 3223 21 0 0 0 chr13 6207791 6207812 -95665357 + AT_rich Low_complexity Low_complexity 1 21 0 2900 164 71 9 chr13 6207812 6208360 -95664809 - L1MB3 LINE L1 -1 6182 5601 235 239 11 68 chr13 6209026 6209114 -95664055 + (CCCA)n Simple_repeat Simple_repeat 2 84 0 181 244 78 44 chr13 6209116 6209206 -95663963 - L2 LINE L2 -16 3256 3164 345 62 0 0 chr13 6209978 6210026 -95663143 + (TG)n Simple_repeat Simple_repeat 2 49 0 22 35 0 0 chr13 6210054 6210083 -95663086 + AT_rich Low_complexity Low_complexity 1 29 0 423 231 52 23 chr13 6210302 6210513 -95662656 + Charlie7 DNA MER1_type 2317 2612 0 218 269 0 30 chr13 6210557 6210624 -95662545 + G-rich Low_complexity Low_complexity 4 68 0 783 244 168 43 chr13 6211765 6211995 -95661174 - MER58B DNA MER1_type -2079 341 63 1854 169 10 7 chr13 6211995 6212303 -95660866 + AluJo SINE Alu 1 309 -3 783 244 168 43 chr13 6212303 6212375 -95660794 - MER58B DNA MER1_type -2357 63 1 337 346 82 0 chr13 6212522 6212704 -95660465 - MIR SINE MIR -52 210 14 1865 178 0 0 chr13 6213094 6213392 -95659777 - AluJb SINE Alu -14 298 1 795 180 0 0 chr13 6213428 6213556 -95659613 - FLAM_C SINE Alu -3 130 3 441 115 58 16 chr13 6214922 6215011 -95658158 - L1PA8 LINE L1 0 6154 6067 876 122 0 15 chr13 6215156 6215287 -95657882 + FLAM_C SINE Alu 12 140 -3 204 97 0 0 chr13 6216175 6216206 -95656963 + (TA)n Simple_repeat Simple_repeat 1 31 0 285 316 85 17 chr13 6216251 6216428 -95656741 + MIR SINE MIR 74 262 0 382 344 78 9 chr13 6216658 6216876 -95656293 - MIR SINE MIR -10 252 20 24 0 0 0 chr13 6218598 6218622 -95654547 + GC_rich Low_complexity Low_complexity 1 24 0 1474 203 51 34 chr13 6219187 6219542 -95653627 + MLT1C-int LTR MaLR 1010 1370 -1 743 239 188 35 chr13 6219543 6219941 -95653228 + MLT1C LTR MaLR 6 464 -3 23 54 0 0 chr13 6220349 6220386 -95652783 + AT_rich Low_complexity Low_complexity 1 37 0 712 225 66 44 chr13 6220840 6221067 -95652102 + MLT1J LTR MaLR 13 244 -267 440 169 45 11 chr13 6221204 6221293 -95651876 + MLT1J LTR MaLR 420 511 0 22 0 0 0 chr13 6224902 6224924 -95648245 + AT_rich Low_complexity Low_complexity 1 22 0 816 210 19 12 chr13 6224926 6225088 -95648081 - FAM SINE Alu -12 163 1 2900 181 27 9 chr13 6225434 6225986 -95647183 - MER68 LTR ERV1 0 562 1 1919 170 80 18 chr13 6226480 6226879 -95646290 - MSTB LTR MaLR -2 424 1 25 0 0 0 chr13 6226974 6226999 -95646170 + AT_rich Low_complexity Low_complexity 1 25 0 288 273 182 0 chr13 6227344 6227476 -95645693 - L2 LINE L2 -447 2867 2712 2226 94 0 19 chr13 6227927 6228235 -95644934 + AluSc SINE Alu 1 302 -7 23 0 0 0 chr13 6228839 6228862 -95644307 + AT_rich Low_complexity Low_complexity 1 23 0 923 216 0 0 chr13 6228935 6229111 -95644058 + AluJb SINE Alu 137 312 0 699 184 19 25 chr13 6229150 6229308 -95643861 - L1MB8 LINE L1 -1 6177 6021 1557 169 64 0 chr13 6229309 6229604 -95643565 - L1MB8 LINE L1 -212 5966 5653 21 0 0 0 chr13 6230634 6230655 -95642514 + AT_rich Low_complexity Low_complexity 1 21 0 330 246 36 169 chr13 6230684 6230932 -95642237 - MIR SINE MIR -11 251 37 337 211 10 10 chr13 6231173 6231277 -95641892 + GA-rich Low_complexity Low_complexity 2 105 0 233 278 0 0 chr13 6231317 6231389 -95641780 + GA-rich Low_complexity Low_complexity 3 74 0 889 217 21 5 chr13 6232414 6232603 -95640566 - MER58A DNA MER1_type -3 221 30 2003 147 46 11 chr13 6233190 6233537 -95639632 - MER46B DNA MER2_type 0 236 3 1459 204 71 12 chr13 6233544 6233882 -95639287 - MER47A DNA MER2_type 0 366 9 2456 67 0 0 chr13 6234094 6234394 -95638775 - AluY SINE Alu -11 300 1 368 147 37 110 chr13 6234401 6234510 -95638659 - L1M4 LINE L1 -399 5779 5679 13795 190 36 14 chr13 6235245 6235656 -95637513 + L1PA16 LINE L1 1349 1749 -5120 2285 111 0 10 chr13 6235656 6235962 -95637207 + AluSp SINE Alu 1 303 -10 13795 190 36 14 chr13 6235962 6240948 -95632221 + L1PA16 LINE L1 1749 6860 -9 1023 234 62 34 chr13 6240925 6241313 -95631856 - L1M4 LINE L1 -1561 4585 4187 * 465 223 0 0 chr13 6241852 6241955 -95631214 - L1MA9 LINE L1 -37 6275 6173 204 388 110 0 chr13 6242513 6242776 -95630393 - L2 LINE L2 -542 2772 2481 456 202 126 0 chr13 6242951 6243070 -95630099 - Charlie5 DNA MER1_type -55 2557 2424 405 0 0 0 chr13 6246719 6246764 -95626405 + (TG)n Simple_repeat Simple_repeat 2 46 0 284 118 39 20 chr13 6246764 6246815 -95626354 - MER66B LTR ERV1 -140 346 295 2102 165 69 17 chr13 6247374 6247674 -95625495 - L1MB3 LINE L1 -32 6151 5823 2091 138 0 10 chr13 6247674 6247985 -95625184 - AluSx SINE Alu -4 308 1 2102 165 69 17 chr13 6247985 6248090 -95625079 - L1MB3 LINE L1 -360 5823 5725 743 316 128 9 chr13 6248117 6248572 -95624597 - L1MC/D LINE L1 -2004 5804 5296 2242 102 0 7 chr13 6248880 6249174 -95623995 + AluSc SINE Alu 1 292 -17 2135 180 8 0 chr13 6249440 6249802 -95623367 + MLT1A1 LTR MaLR 1 365 0 236 351 105 39 chr13 6250027 6250539 -95622630 + L2 LINE L2 2728 3270 -2 192 300 40 10 chr13 6251658 6251758 -95621411 - MIR SINE MIR -48 214 112 194 214 200 0 chr13 6251864 6251934 -95621235 + MIR SINE MIR 41 124 -84 551 237 39 77 chr13 6251984 6252191 -95620978 - MLT1J1 LTR MaLR 0 446 248 409 237 69 58 chr13 6252225 6252398 -95620771 - MER69A DNA AcHobo 0 177 3 243 234 47 0 chr13 6252500 6252564 -95620605 + MIR SINE MIR 196 262 0 204 40 0 0 chr13 6253609 6253634 -95619535 + (T)n Simple_repeat Simple_repeat 1 25 0 1023 200 44 5 chr13 6254571 6254776 -95618393 + MER20 DNA MER1_type 7 219 0 666 188 171 0 chr13 6255733 6255903 -95617266 - MLT1D LTR MaLR -3 502 304 1779 181 22 44 chr13 6255997 6256405 -95616764 - MER57A LTR ERV1 -4 399 1 621 199 41 23 chr13 6256405 6256576 -95616593 - MLT1D LTR MaLR -198 307 134 848 226 134 24 chr13 6256843 6257171 -95615998 - L1ME1 LINE L1 -5 6230 5867 2392 161 33 0 chr13 6257171 6257569 -95615600 - MSTB LTR MaLR 0 426 16 2824 211 49 40 chr13 6257587 6258563 -95614606 - L1ME1 LINE L1 -399 5836 4848 2174 127 0 3 chr13 6258563 6258862 -95614307 - AluSx SINE Alu -14 298 1 2824 211 49 40 chr13 6258862 6259148 -95614021 - L1ME1 LINE L1 -1387 4848 4566 864 280 52 0 chr13 6259184 6259470 -95613699 - L1ME1 LINE L1 -6067 329 29 347 216 30 26 chr13 6259640 6259755 -95613414 + L1ME LINE L1 5369 5456 -708 210 299 84 32 chr13 6259857 6260011 -95613158 - L2 LINE L2 -193 3079 2918 180 332 132 0 chr13 6261526 6261791 -95611378 - L2 LINE L2 -2499 815 516 304 319 49 16 chr13 6267108 6267207 -95605962 + MIR SINE MIR 14 108 -154 1749 161 3 42 chr13 6267207 6267518 -95605651 - AluSx SINE Alu -13 299 1 304 319 49 16 chr13 6267518 6267603 -95605566 + MIR SINE MIR 108 204 -58 180 0 0 0 chr13 6268318 6268338 -95604831 + (GA)n Simple_repeat Simple_repeat 1 20 0 467 63 16 0 chr13 6269012 6269075 -95604094 - MER4B LTR ERV1 0 610 547 3557 100 8 60 chr13 6269076 6269718 -95603451 - MER4B LTR ERV1 0 779 1 1037 125 0 36 chr13 6269718 6269884 -95603285 - MER4B LTR ERV1 -89 521 362 1051 172 78 5 chr13 6270025 6270229 -95602940 + L1PA6 LINE L1 5911 6129 -25 23 0 0 0 chr13 6270291 6270314 -95602855 + AT_rich Low_complexity Low_complexity 1 23 0 1868 168 0 3 chr13 6270472 6270776 -95602393 - AluJb SINE Alu -9 303 1 1660 169 20 10 chr13 6271943 6272239 -95600930 - AluJb SINE Alu -12 300 2 919 186 25 0 chr13 6272255 6272416 -95600753 + FAM SINE Alu 2 166 -9 2211 109 17 0 chr13 6272983 6273276 -95599893 + AluSx SINE Alu 1 298 -14 34 84 0 0 chr13 6274269 6274352 -95598817 + AT_rich Low_complexity Low_complexity 1 83 0 230 246 35 0 chr13 6274422 6274479 -95598690 + L2 LINE L2 3211 3269 -3 2448 42 0 51 chr13 6275929 6276241 -95596928 - AluY SINE Alu -15 296 1 237 322 23 0 chr13 6277053 6277140 -95596029 + MIR3 SINE MIR 74 162 -46 319 198 32 19 chr13 6277203 6277360 -95595809 + (TA)n Simple_repeat Simple_repeat 2 160 0 2477 51 10 0 chr13 6277466 6277758 -95595411 - AluY SINE Alu -16 295 1 2283 98 3 0 chr13 6280243 6280539 -95592630 - AluSq SINE Alu -16 297 1 863 208 38 32 chr13 6280577 6280765 -95592404 - L1MC4 LINE L1 -380 7662 7477 524 113 62 0 chr13 6280765 6280845 -95592324 - L1PA16 LINE L1 -10 6156 6072 863 208 38 32 chr13 6280845 6281073 -95592096 - L1MC4 LINE L1 -565 7477 7016 3461 175 50 5 chr13 6281119 6281777 -95591392 - Tigger2 DNA MER2_type -2029 689 2 273 206 68 14 chr13 6281777 6281831 -95591338 - L1MC4 LINE L1 -1506 6536 6476 3331 203 67 85 chr13 6281831 6282711 -95590458 - MER6 DNA MER2_type -1 864 1 273 206 68 14 chr13 6282711 6282729 -95590440 - L1MC4 LINE L1 -1566 6476 6460 617 225 43 0 chr13 6283394 6283532 -95589637 + FRAM SINE Alu 28 171 -5 1447 157 19 83 chr13 6283533 6283845 -95589324 + AluSq SINE Alu 1 292 -21 6119 191 36 27 chr13 6283845 6285280 -95587889 + L1 LINE L1 3889 5336 -810 2608 94 25 0 chr13 6285833 6286195 -95586974 - L1PA6 LINE L1 0 6154 5784 1558 213 82 49 chr13 6286350 6286839 -95586330 + MLT1D LTR MaLR 1 505 0 477 50 0 0 chr13 6287225 6287285 -95585884 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 24 53 0 0 chr13 6287576 6287614 -95585555 + AT_rich Low_complexity Low_complexity 1 38 0 675 159 0 40 chr13 6287670 6287796 -95585373 + FLAM_A SINE Alu 1 121 -12 249 57 0 0 chr13 6287827 6287862 -95585307 + (TA)n Simple_repeat Simple_repeat 2 36 0 979 275 95 32 chr13 6288160 6288691 -95584478 - L1ME3A LINE L1 -312 5919 5326 1940 119 19 0 chr13 6288691 6288959 -95584210 - AluSg SINE Alu 0 310 38 979 275 95 32 chr13 6288959 6289210 -95583959 - L1ME3A LINE L1 -905 5326 5092 2329 72 0 75 chr13 6289462 6289795 -95583374 - AluY SINE Alu -3 308 1 370 231 69 43 chr13 6289974 6290013 -95583156 - L1ME3A LINE L1 -2845 3370 3333 2455 83 0 16 chr13 6290013 6290326 -95582843 - AluSg SINE Alu -2 308 1 370 231 69 43 chr13 6290326 6290563 -95582606 - L1ME3A LINE L1 -2882 3333 3087 451 281 56 6 chr13 6290574 6290734 -95582435 + MIR SINE MIR 74 241 -21 22 94 0 0 chr13 6290890 6290954 -95582215 + AT_rich Low_complexity Low_complexity 1 64 0 297 263 144 54 chr13 6291093 6291552 -95581617 - L1MDa LINE L1 -871 1705 1311 654 305 47 72 chr13 6291640 6291992 -95581177 - L1MDa LINE L1 -5104 1101 767 682 194 8 8 chr13 6291992 6292116 -95581053 - FLAM_A SINE Alu -9 124 1 654 305 47 72 chr13 6292116 6292333 -95580836 - L1MDa LINE L1 -5438 767 546 371 127 28 0 chr13 6292335 6292406 -95580763 - MER53 DNA DNA 0 189 117 1394 195 44 13 chr13 6292445 6292505 -95580664 - L1MC1 LINE L1 0 6344 6287 2674 66 3 21 chr13 6292505 6292882 -95580287 - L1PA13 LINE L1 -2 6161 5792 1394 195 44 13 chr13 6292882 6292941 -95580228 - L1MC1 LINE L1 -57 6287 6231 429 109 0 0 chr13 6292941 6293005 -95580164 + (CA)n Simple_repeat Simple_repeat 2 65 0 1394 195 44 13 chr13 6293005 6293226 -95579943 - L1MC1 LINE L1 -113 6231 6009 455 245 25 80 chr13 6293560 6293723 -95579446 - L1MDa LINE L1 -5960 245 92 336 280 76 0 chr13 6293728 6293846 -95579323 - MIR SINE MIR -55 207 81 2302 150 92 9 chr13 6295024 6295472 -95577697 + MER31A LTR ERV1 1 485 0 21 0 0 0 chr13 6296112 6296133 -95577036 + AT_rich Low_complexity Low_complexity 1 21 0 266 250 53 0 chr13 6297587 6297663 -95575506 - MLT1G LTR MaLR -13 577 498 484 270 101 30 chr13 6297778 6298045 -95575124 - MLT1G LTR MaLR -290 300 15 1842 159 14 3 chr13 6298217 6298513 -95574656 - AluSx SINE Alu -13 299 1 1546 223 58 62 chr13 6298730 6298792 -95574377 - Charlie1 DNA MER1_type 0 2761 2700 1918 161 3 3 chr13 6298792 6299102 -95574067 + AluSx SINE Alu 1 310 -2 1546 223 58 62 chr13 6299102 6299569 -95573600 - Charlie1 DNA MER1_type -61 2700 2234 261 254 0 60 chr13 6300032 6300166 -95573003 + (CCCCAA)n Simple_repeat Simple_repeat 1 126 0 834 120 8 0 chr13 6306180 6306297 -95566872 - LTR12 LTR ERV1 -238 476 359 323 290 0 0 chr13 6306297 6306397 -95566772 - LTR30 LTR ERV1 -98 624 525 1712 117 0 146 chr13 6306397 6306792 -95566377 - pTR5 LTR ERV1 -429 2009 1352 879 199 11 69 chr13 6306879 6307141 -95566028 - pTR5 LTR ERV1 -1410 1028 782 258 273 102 0 chr13 6307747 6307835 -95565334 - MIR SINE MIR -73 189 93 2106 127 3 3 chr13 6308557 6308856 -95564313 - AluSc SINE Alu -10 299 1 3310 170 71 43 chr13 6311419 6312755 -95560414 + LTR19-int LTR ERV1 478 2131 -3086 2010 130 48 0 chr13 6312760 6313053 -95560116 - AluSx SINE Alu -5 307 1 520 121 0 36 chr13 6313576 6313659 -95559510 - FRAM SINE Alu -27 149 70 556 189 0 0 chr13 6314433 6314528 -95558641 + AluJb SINE Alu 206 300 -12 543 245 100 52 chr13 6314528 6314767 -95558402 - L1M4 LINE L1 -2043 4103 3846 2044 142 3 7 chr13 6314767 6315077 -95558092 - AluSx SINE Alu -3 309 1 543 245 100 52 chr13 6315077 6315127 -95558042 - L1M4 LINE L1 -2300 3846 3800 915 234 69 31 chr13 6315834 6316224 -95556945 + MLT1A1 LTR MaLR 10 363 -2 1457 163 16 16 chr13 6316368 6316620 -95556549 + AluJo SINE Alu 37 288 -24 189 0 0 0 chr13 6316637 6316658 -95556511 + (TG)n Simple_repeat Simple_repeat 2 22 0 285 62 0 42 chr13 6316709 6316757 -95556412 - Alu SINE Alu 0 302 257 5057 157 32 60 chr13 6317304 6318403 -95554766 - MER11C LTR ERVK -1 1070 3 551 269 145 44 chr13 6319776 6320013 -95553156 + MIR SINE MIR 4 261 -1 1540 193 0 7 chr13 6320017 6320313 -95552856 - AluJo SINE Alu -18 294 1 434 257 13 40 chr13 6320412 6320564 -95552605 + MER104 DNA Tc2 33 180 0 197 277 0 0 chr13 6321026 6321073 -95552096 + L2 LINE L2 3225 3271 -1 1912 134 0 0 chr13 6322238 6322522 -95550647 + AluSx SINE Alu 1 284 -28 231 326 62 39 chr13 6324099 6324228 -95548941 + MIR SINE MIR 81 212 -50 391 305 49 43 chr13 6325343 6325507 -95547662 + L2 LINE L2 3104 3268 -4 1994 116 10 0 chr13 6325991 6326293 -95546876 + AluSx SINE Alu 1 305 -7 610 67 56 0 chr13 6326675 6326764 -95546405 - AluY SINE Alu -7 304 211 201 39 0 0 chr13 6327574 6327600 -95545569 + (CA)n Simple_repeat Simple_repeat 2 27 0 395 111 0 0 chr13 6327630 6327684 -95545485 - MSTD LTR MaLR -342 54 1 361 223 138 0 chr13 6327757 6327887 -95545282 + L1ME LINE L1 1173 1319 -5087 1202 167 99 35 chr13 6327889 6328171 -95544998 + AluJo SINE Alu 6 305 -7 254 167 133 0 chr13 6328188 6328248 -95544921 + FAM SINE Alu 105 172 -3 707 222 46 42 chr13 6328248 6328509 -95544660 + L1ME LINE L1 2411 2672 -3734 * 5501 231 68 56 chr13 6328506 6328666 -95544503 + L1ME LINE L1 3359 3516 -2890 1914 140 3 10 chr13 6328666 6328980 -95544189 + AluSx SINE Alu 1 312 0 5501 231 68 56 chr13 6328980 6329205 -95543964 + L1ME LINE L1 3516 3737 -2669 1445 188 11 31 chr13 6329205 6329492 -95543677 - AluJo SINE Alu -29 283 3 5501 231 68 56 chr13 6329492 6330387 -95542782 + L1ME LINE L1 3737 4620 -1786 1717 118 0 4 chr13 6330387 6330641 -95542528 + L1PB1 LINE L1 5896 6148 -3 5501 231 68 56 chr13 6330641 6330891 -95542278 + L1ME LINE L1 4620 4866 -1540 2126 109 7 3 chr13 6330891 6331193 -95541976 + AluSq SINE Alu 1 303 -10 5501 231 68 56 chr13 6331193 6331816 -95541353 + L1ME LINE L1 4866 5545 -861 2240 71 7 0 chr13 6331816 6332110 -95541059 + AluY SINE Alu 1 296 -15 5501 231 68 56 chr13 6332110 6332206 -95540963 + L1ME LINE L1 5545 5638 -768 562 123 26 70 chr13 6332207 6332321 -95540848 - FLAM_C SINE Alu -6 137 29 268 262 37 47 chr13 6332322 6332429 -95540740 + L1ME LINE L1 5770 5875 -547 1965 125 17 0 chr13 6332429 6332724 -95540445 - AluSx SINE Alu -12 300 1 1748 165 0 16 chr13 6332772 6333081 -95540088 + AluJb SINE Alu 1 304 -8 888 300 93 39 chr13 6333143 6333636 -95539533 + LTR33 LTR ERVL 2 521 0 7374 49 6 10 chr13 6333772 6334950 -95538219 + SVA Other Other 326 1382 -4 391 320 66 22 chr13 6334954 6335135 -95538034 + L1MC/D LINE L1 4519 4707 -1439 1566 177 78 27 chr13 6335260 6335594 -95537575 - MSTD LTR MaLR -45 351 1 971 178 194 62 chr13 6335617 6335689 -95537480 + MER2 DNA MER2_type 1 62 -282 252 0 0 0 chr13 6335689 6335717 -95537452 + (TA)n Simple_repeat Simple_repeat 2 29 0 1985 77 7 39 chr13 6335719 6336005 -95537164 - AluY SINE Alu -34 277 1 971 178 194 62 chr13 6336005 6336233 -95536936 + MER2 DNA MER2_type 62 344 0 1567 185 0 17 chr13 6336270 6336567 -95536602 + AluJb SINE Alu 1 292 -20 921 307 45 12 chr13 6336633 6337034 -95536135 + L1MC/D LINE L1 5278 5691 -2117 1000 71 21 0 chr13 6337247 6337388 -95535781 - HSMAR1 DNA Mariner 0 1287 1144 2058 106 13 3 chr13 6337391 6337692 -95535477 - AluSp SINE Alu -1 312 9 188 319 116 48 chr13 6340567 6340774 -95532395 - MIR SINE MIR -40 222 2 672 210 76 93 chr13 6340837 6341127 -95532042 - MLT1B LTR MaLR 0 390 106 1497 108 42 12 chr13 6341201 6341441 -95531728 - Tigger2 DNA MER2_type -54 2664 2418 2290 87 0 6 chr13 6341695 6342007 -95531162 - AluY SINE Alu -1 310 1 226 259 141 0 chr13 6343993 6344078 -95529091 - MIR SINE MIR 0 262 166 188 200 20 0 chr13 6344315 6344365 -95528804 + (TA)n Simple_repeat Simple_repeat 2 52 0 2614 14 0 0 chr13 6345883 6346203 -95526966 - AluYa5 SINE Alu 0 320 1 22 0 0 0 chr13 6346498 6346520 -95526649 + AT_rich Low_complexity Low_complexity 1 22 0 1865 138 0 0 chr13 6347577 6347866 -95525303 + AluSg1 SINE Alu 1 289 -20 197 132 26 0 chr13 6348766 6348804 -95524365 + GA-rich Low_complexity Low_complexity 1 39 0 1320 162 46 12 chr13 6349326 6349567 -95523602 + MLT1A1 LTR MaLR 116 364 -1 775 245 125 14 chr13 6349806 6350014 -95523155 - MIR SINE MIR -14 248 18 423 281 136 25 chr13 6350184 6350383 -95522786 - MIR SINE MIR -14 248 28 352 263 73 47 chr13 6350424 6350615 -95522554 + MIR SINE MIR 16 207 -55 1818 189 20 85 chr13 6350654 6351150 -95522019 + MLT2C2 LTR ERVL 1 464 0 378 296 118 10 chr13 6352217 6352420 -95520749 + MER112 DNA MER1_type 3 227 -33 2946 147 68 9 chr13 6353480 6354024 -95519145 + L1MB3 LINE L1 5599 6174 -9 206 240 20 0 chr13 6357180 6357230 -95515939 + L2 LINE L2 3210 3260 -12 223 325 34 17 chr13 6357399 6357516 -95515653 + MIR SINE MIR 42 160 -102 312 247 169 0 chr13 6357687 6357776 -95515393 - MIR SINE MIR -82 180 77 246 244 252 9 chr13 6358392 6358507 -95514662 + LTR16C LTR ERVL 71 213 -278 529 200 25 0 chr13 6358529 6358649 -95514520 + LTR16C LTR ERVL 363 485 -6 375 163 11 22 chr13 6358887 6358979 -95514190 + GA-rich Low_complexity Low_complexity 3 93 0 1500 225 38 40 chr13 6359074 6359496 -95513673 + L1MC4a LINE L1 7346 7766 -42 685 140 0 0 chr13 6360326 6360426 -95512743 - FLAM_C SINE Alu -33 110 11 1990 126 7 0 chr13 6360439 6360741 -95512428 - AluSx SINE Alu -8 304 1 2294 66 0 7 chr13 6361548 6361849 -95511320 - AluY SINE Alu -12 299 1 1326 219 111 28 chr13 6362246 6362670 -95510499 + MLT1C LTR MaLR 1 459 -8 322 322 71 95 chr13 6362715 6362743 -95510426 + L1MC/D LINE L1 5322 5349 -2459 1685 171 0 25 chr13 6362743 6363058 -95510111 + AluJo SINE Alu 1 307 -5 322 322 71 95 chr13 6363058 6363312 -95509857 + L1MC/D LINE L1 5349 5597 -2211 2003 106 7 23 chr13 6363313 6363616 -95509553 - AluSx SINE Alu -14 298 1 1576 148 7 35 chr13 6363860 6364150 -95509019 - AluSx SINE Alu -22 290 9 516 248 36 22 chr13 6364207 6364344 -95508825 + MER74B LTR ERVL 67 205 -417 264 229 0 0 chr13 6364394 6364442 -95508727 - MIR SINE MIR -82 126 79 2634 26 0 3 chr13 6364505 6364817 -95508352 + AluYa5 SINE Alu 1 311 0 244 156 16 94 chr13 6364868 6364932 -95508237 - L2 LINE L2 0 3272 3214 263 175 18 0 chr13 6365073 6365130 -95508039 + CT-rich Low_complexity Low_complexity 1 58 0 2074 103 10 17 chr13 6365132 6365434 -95507735 - AluSp SINE Alu -2 311 12 2410 60 0 3 chr13 6365916 6366217 -95506952 - AluY SINE Alu -9 302 3 1811 188 135 12 chr13 6366427 6366843 -95506326 - MLT1C LTR MaLR 0 467 1 1934 148 0 7 chr13 6368634 6368944 -95504225 - AluSx SINE Alu -4 308 1 198 266 21 128 chr13 6369147 6369241 -95503928 - MIR SINE MIR -102 106 23 561 274 64 95 chr13 6369311 6369669 -95503500 - MLT1J LTR MaLR -54 457 111 279 178 41 27 chr13 6369608 6369681 -95503488 - LTR67 LTR ERVL -380 177 104 * 432 316 73 10 chr13 6370404 6370610 -95502559 - MARNA DNA Mariner -46 540 322 22 0 0 0 chr13 6372884 6372906 -95500263 + AT_rich Low_complexity Low_complexity 1 22 0 627 256 94 30 chr13 6374079 6374484 -95498685 + LTR33 LTR ERVL 1 467 -54 192 315 117 12 chr13 6374546 6374708 -95498461 - MIR SINE MIR -74 188 10 1573 154 39 29 chr13 6374776 6375055 -95498114 + AluJo SINE Alu 1 282 -30 637 277 98 5 chr13 6380926 6381150 -95492019 - MIR SINE MIR 0 262 18 295 284 8 94 chr13 6382327 6382429 -95490740 + MIR SINE MIR 59 150 -112 2255 106 0 6 chr13 6382429 6382740 -95490429 + AluY SINE Alu 1 309 -2 295 284 8 94 chr13 6382740 6382764 -95490405 + MIR SINE MIR 150 174 -88 752 207 18 12 chr13 6382959 6383123 -95490046 + MER5A DNA MER1_type 15 179 -10 1730 182 21 49 chr13 6384533 6384918 -95488251 - MLT1A2 LTR MaLR 0 374 1 341 291 61 10 chr13 6384952 6385148 -95488021 + MIR SINE MIR 47 252 -10 1283 204 106 0 chr13 6385290 6385555 -95487614 + MLT1A1 LTR MaLR 73 365 0 1604 259 21 42 chr13 6385557 6385990 -95487179 + MLT1F LTR MaLR 61 485 -57 1992 133 56 19 chr13 6385990 6386312 -95486857 - MER1B DNA MER1_type 0 337 4 1604 259 21 42 chr13 6386312 6386356 -95486813 + MLT1F LTR MaLR 485 528 -14 2281 117 3 0 chr13 6386674 6386982 -95486187 + AluSp SINE Alu 1 309 -4 238 283 0 0 chr13 6387234 6387287 -95485882 + (CA)n Simple_repeat Simple_repeat 1 53 0 2297 113 0 0 chr13 6387737 6388046 -95485123 - AluSc SINE Alu 0 309 1 1537 104 0 5 chr13 6388114 6388315 -95484854 - AluSx SINE Alu -112 200 1 184 107 0 0 chr13 6389031 6389059 -95484110 - L2 LINE L2 -1 3271 3244 195 42 0 0 chr13 6389061 6389085 -95484084 + (TG)n Simple_repeat Simple_repeat 1 24 0 213 222 287 9 chr13 6389504 6389612 -95483557 - L2 LINE L2 -1254 2060 1923 232 310 99 30 chr13 6389655 6389887 -95483282 + L1M4 LINE L1 3596 3843 -2303 1889 157 7 0 chr13 6389930 6390210 -95482959 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr13 6390396 6390418 -95482751 + AT_rich Low_complexity Low_complexity 1 22 0 1415 200 48 10 chr13 6390427 6390717 -95482452 + AluJo SINE Alu 1 301 -11 294 287 53 0 chr13 6390946 6391040 -95482129 + L2 LINE L2 3172 3270 -2 786 229 60 28 chr13 6391655 6391904 -95481265 + L1ME LINE L1 5539 5795 -326 4012 68 9 4 chr13 6392148 6392674 -95480495 + L1PA6 LINE L1 5625 6153 -1 1250 180 56 88 chr13 6393332 6393709 -95479460 + MLT1A1 LTR MaLR 1 365 0 243 0 0 0 chr13 6394371 6394398 -95478771 + (T)n Simple_repeat Simple_repeat 1 27 0 1312 215 60 3 chr13 6395303 6395587 -95477582 + AluJb SINE Alu 1 300 -2 2247 141 28 5 chr13 6395587 6395962 -95477207 - MLT1B LTR MaLR -8 388 1 1858 137 0 53 chr13 6396196 6396495 -95476674 + AluJb SINE Alu 1 283 -29 216 0 0 0 chr13 6396498 6396522 -95476647 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 186 243 57 14 chr13 6396872 6396942 -95476227 - MIR SINE MIR -7 255 183 257 0 30 0 chr13 6398076 6398109 -95475060 + (TC)n Simple_repeat Simple_repeat 1 34 0 973 172 12 6 chr13 6398132 6398295 -95474874 - FRAM SINE Alu -2 164 1 4599 189 25 16 chr13 6398603 6398861 -95474308 + L1MB2 LINE L1 4899 5153 -1018 2198 126 3 0 chr13 6398861 6399163 -95474006 + AluSx SINE Alu 1 303 -9 4599 189 25 16 chr13 6399163 6400163 -95473006 + L1MB2 LINE L1 5153 6171 0 337 241 54 27 chr13 6400920 6401032 -95472137 + MIR SINE MIR 19 133 -75 237 167 0 0 chr13 6401144 6401198 -95471971 + GA-rich Low_complexity Low_complexity 1 54 0 272 240 52 65 chr13 6401488 6401642 -95471527 - L1ME3A LINE L1 0 6170 6019 350 305 41 25 chr13 6401787 6401984 -95471185 - L1MC5 LINE L1 -440 7521 7322 604 249 116 6 chr13 6402105 6402286 -95470883 + MER3 DNA MER1_type 9 209 0 678 238 43 25 chr13 6402286 6402521 -95470648 - L1MC5 LINE L1 -760 7201 6963 748 192 99 29 chr13 6402526 6402682 -95470487 - AluJo SINE Alu -9 303 133 2370 111 0 0 chr13 6402682 6402988 -95470181 - AluSc SINE Alu -3 306 1 748 192 99 29 chr13 6402988 6403003 -95470166 - AluJo SINE Alu -179 133 120 1533 165 6 115 chr13 6403020 6403359 -95469810 - AluJb SINE Alu 0 302 1 354 321 207 0 chr13 6404245 6404438 -95468731 + MIR SINE MIR 28 260 -2 555 314 77 43 chr13 6404485 6405037 -95468132 + L2 LINE L2 2481 3114 -199 2008 105 28 14 chr13 6405037 6405322 -95467847 - AluSx SINE Alu -23 289 1 555 314 77 43 chr13 6405322 6405520 -95467649 + L2 LINE L2 3114 3304 -9 3904 167 23 20 chr13 6406038 6406775 -95466394 - L1MB3 LINE L1 -2 6181 5443 942 207 0 6 chr13 6406858 6407022 -95466147 - FAM SINE Alu -22 163 1 21 57 0 0 chr13 6407037 6407072 -95466097 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr13 6407916 6407947 -95465222 + AT_rich Low_complexity Low_complexity 1 31 0 4154 129 7 10 chr13 6409589 6410186 -95462983 - HSMAR1 DNA Mariner -218 1069 475 2196 120 0 0 chr13 6410198 6410489 -95462680 + AluSx SINE Alu 1 291 -21 3310 55 59 7 chr13 6410489 6410927 -95462242 + L1PA7 LINE L1 5686 6146 -8 2258 120 0 7 chr13 6410936 6411244 -95461925 + AluSg SINE Alu 1 306 -4 324 259 62 49 chr13 6411699 6411861 -95461308 + MER65-int LTR ERV1 98 261 -4610 309 229 91 48 chr13 6412607 6412817 -95460352 + L1MC5 LINE L1 7642 7860 -101 843 219 11 38 chr13 6413046 6413229 -95459940 - MER20 DNA MER1_type -4 215 38 5260 163 12 4 chr13 6413626 6414551 -95458618 - L1P LINE L1 -1232 4914 3983 2669 182 2 17 chr13 6414553 6415070 -95458099 + L1MB3 LINE L1 5675 6183 0 193 322 91 58 chr13 6415195 6415316 -95457853 + MIR SINE MIR 118 242 -20 257 342 53 0 chr13 6415515 6415629 -95457540 + L2 LINE L2 3185 3304 -9 1538 79 19 0 chr13 6416304 6416519 -95456650 + L1PA11 LINE L1 5956 6174 0 219 139 0 0 chr13 6416940 6416976 -95456193 + (A)n Simple_repeat Simple_repeat 1 36 0 236 94 0 0 chr13 6417368 6417444 -95455725 - Alu SINE Alu 0 324 249 2238 157 107 25 chr13 6417444 6417744 -95455425 + L1MC2 LINE L1 5820 6177 -167 2217 122 0 0 chr13 6417744 6418031 -95455138 + AluSc SINE Alu 1 287 -22 2238 157 107 25 chr13 6418031 6418215 -95454954 + L1MC2 LINE L1 6177 6344 0 324 0 0 0 chr13 6418415 6418451 -95454718 + (TG)n Simple_repeat Simple_repeat 1 36 0 249 286 71 52 chr13 6419211 6419421 -95453748 + MIR SINE MIR 46 259 -3 255 289 72 0 chr13 6419475 6419558 -95453611 - MIR SINE MIR -167 95 7 366 323 161 53 chr13 6419675 6420295 -95452874 + L3 LINE CR1 888 1574 -3 1131 140 0 0 chr13 6420297 6420454 -95452715 + AluJb SINE Alu 4 160 -152 402 142 0 0 chr13 6420457 6420533 -95452636 + Alu SINE Alu 241 299 -3 2212 90 4 0 chr13 6421190 6421468 -95451701 + AluSg SINE Alu 1 301 0 199 0 0 0 chr13 6421468 6421490 -95451679 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 908 202 167 74 chr13 6421719 6422139 -95451030 + LTR37B LTR ERV1 10 468 0 1527 160 0 16 chr13 6422731 6422981 -95450188 - AluJb SINE Alu -16 296 51 30 45 0 0 chr13 6423507 6423551 -95449618 + AT_rich Low_complexity Low_complexity 1 44 0 3454 160 39 20 chr13 6423875 6424539 -95448630 + L1MB7 LINE L1 5495 6171 -13 1846 129 126 55 chr13 6427211 6427619 -95445550 + MER61C LTR ERV1 7 434 0 2603 58 0 3 chr13 6427674 6427982 -95445187 + AluY SINE Alu 1 307 -4 1238 134 5 5 chr13 6428009 6428203 -95444966 - Tigger1 DNA MER2_type 0 2418 2225 734 183 7 22 chr13 6428205 6428342 -95444827 + AluJo SINE Alu 2 136 -176 2594 142 27 0 chr13 6428358 6428767 -95444402 - Tigger1 DNA MER2_type -182 2236 1817 333 250 11 11 chr13 6428890 6428982 -95444187 - Tigger1 DNA MER2_type -857 1561 1470 335 157 33 13 chr13 6428982 6429135 -95444034 + (TATAA)n Simple_repeat Simple_repeat 4 159 0 353 175 44 17 chr13 6429140 6429425 -95443744 + (TTATA)n Simple_repeat Simple_repeat 1 292 0 31 0 0 0 chr13 6429425 6429456 -95443713 + AT_rich Low_complexity Low_complexity 1 31 0 336 80 68 51 chr13 6429456 6429632 -95443537 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 582 85 73 0 chr13 6429628 6429792 -95443377 + (TA)n Simple_repeat Simple_repeat 1 176 0 298 148 49 16 chr13 6429810 6429932 -95443237 + (TA)n Simple_repeat Simple_repeat 1 126 0 2201 84 0 11 chr13 6429940 6430224 -95442945 - AluY SINE Alu -30 281 1 8998 123 42 20 chr13 6430224 6431056 -95442113 - Tigger1 DNA MER2_type -939 1479 601 2076 115 34 3 chr13 6431056 6431352 -95441817 - AluSx SINE Alu -7 305 1 8998 123 42 20 chr13 6431352 6431956 -95441213 - Tigger1 DNA MER2_type -1817 601 12 21 0 0 0 chr13 6432453 6432474 -95440695 + AT_rich Low_complexity Low_complexity 1 21 0 426 351 137 17 chr13 6432858 6433217 -95439952 + L2 LINE L2 1872 2273 -1041 243 360 134 7 chr13 6434380 6434663 -95438506 + L2 LINE L2 2950 3268 -4 702 167 92 0 chr13 6434716 6434836 -95438333 + FLAM_C SINE Alu 2 132 -11 21 36 0 0 chr13 6434836 6434864 -95438305 + AT_rich Low_complexity Low_complexity 1 28 0 208 128 51 0 chr13 6435022 6435061 -95438108 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1840 152 3 20 chr13 6435974 6436270 -95436899 - AluSx SINE Alu -21 291 1 207 0 0 0 chr13 6436270 6436293 -95436876 + (T)n Simple_repeat Simple_repeat 1 23 0 1728 126 4 24 chr13 6436400 6436655 -95436514 - AluSq SINE Alu -9 304 55 24 32 0 0 chr13 6437032 6437063 -95436106 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 6438077 6438099 -95435070 + AT_rich Low_complexity Low_complexity 1 22 0 1427 123 88 4 chr13 6438174 6438434 -95434735 - L1MA5 LINE L1 -2 6298 6017 540 212 171 23 chr13 6438511 6438775 -95434394 - L1MC5 LINE L1 -50 7911 7609 314 345 12 25 chr13 6439105 6439355 -95433814 + HERVL LTR ERVL 1516 1800 -3964 345 287 71 96 chr13 6439576 6440070 -95433099 + HERVL LTR ERVL 3851 4395 -1090 376 293 132 19 chr13 6440555 6440963 -95432206 + L2 LINE L2 2581 3044 -269 443 219 24 41 chr13 6441840 6441963 -95431206 + LTR67 LTR ERVL 429 549 -8 1772 164 88 8 chr13 6442162 6442515 -95430654 + MLT1C LTR MaLR 2 382 -85 1933 145 35 0 chr13 6445492 6445781 -95427388 + AluSx SINE Alu 1 299 -13 237 230 142 35 chr13 6446005 6446118 -95427051 + MIR3 SINE MIR 3 127 -81 2121 116 7 13 chr13 6446879 6447182 -95425987 + AluSx SINE Alu 3 303 -9 460 208 10 10 chr13 6447214 6447315 -95425854 - MIR3 SINE MIR -39 169 69 2088 119 3 17 chr13 6447788 6448083 -95425086 - AluSg SINE Alu -19 291 1 338 136 40 160 chr13 6448146 6448271 -95424898 + MER34 LTR ERV1 433 542 0 1852 154 16 16 chr13 6448771 6449082 -95424087 + AluJb SINE Alu 1 311 -1 1556 182 37 14 chr13 6449788 6450085 -95423084 - AluJb SINE Alu -8 304 1 1530 228 47 17 chr13 6450344 6450747 -95422422 + MLT1C LTR MaLR 53 467 0 471 313 70 18 chr13 6450944 6451171 -95421998 - MIR SINE MIR 0 262 24 305 226 60 12 chr13 6451314 6451398 -95421771 - Charlie4 DNA MER1_type -33 1928 1841 1916 169 10 3 chr13 6452585 6452893 -95420276 - AluJo SINE Alu -2 310 1 696 148 9 0 chr13 6454389 6454497 -95418672 - AluJb SINE Alu -15 297 189 1014 147 0 0 chr13 6454497 6454640 -95418529 - AluSq/x SINE Alu -169 143 1 2018 157 0 0 chr13 6454943 6455249 -95417920 - AluJb SINE Alu -4 308 3 2185 108 0 62 chr13 6456207 6456532 -95416637 + AluSx SINE Alu 1 305 -7 344 208 35 6 chr13 6456649 6456822 -95416347 + (TA)n Simple_repeat Simple_repeat 2 179 0 648 203 0 17 chr13 6456890 6457008 -95416161 - FLAM_A SINE Alu -14 119 4 4583 153 38 27 chr13 6457012 6457308 -95415861 - L1MB3 LINE L1 -40 6143 5852 1900 130 3 25 chr13 6457308 6457617 -95415552 - AluSg SINE Alu 0 303 1 4583 153 38 27 chr13 6457617 6458079 -95415090 - L1MB3 LINE L1 -331 5852 5371 1952 79 0 20 chr13 6458079 6458331 -95414838 - AluSx SINE Alu -14 298 52 4583 153 38 27 chr13 6458331 6458416 -95414753 - L1MB3 LINE L1 -812 5371 5288 271 322 94 0 chr13 6458592 6458730 -95414439 + MIR SINE MIR 43 190 -67 1761 183 10 0 chr13 6458919 6459208 -95413961 - AluJo SINE Alu -15 297 6 271 284 15 0 chr13 6459416 6459483 -95413686 - MER5A DNA MER1_type -56 133 66 384 293 158 6 chr13 6459641 6459805 -95413364 - MIR SINE MIR -26 236 48 288 0 0 0 chr13 6460761 6460793 -95412376 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr13 6461436 6461459 -95411710 + AT_rich Low_complexity Low_complexity 1 23 0 755 203 152 21 chr13 6461581 6461832 -95411337 + L1MB7 LINE L1 4906 5201 -945 1883 151 0 35 chr13 6461832 6462143 -95411026 + AluJb SINE Alu 1 300 -12 755 203 152 21 chr13 6462143 6462181 -95410988 + L1MB7 LINE L1 5201 5233 -913 2049 197 100 24 chr13 6462187 6462655 -95410514 + MLT2B2 LTR ERVL 9 512 -3 3910 202 31 13 chr13 6462655 6463537 -95409632 + L1MB7 LINE L1 5236 6132 -52 341 285 59 31 chr13 6463574 6463746 -95409423 + L1ME3 LINE L1 5995 6152 -10 354 312 145 0 chr13 6463988 6464174 -95408995 - MIR SINE MIR -30 232 20 23 0 0 0 chr13 6465842 6465865 -95407304 + AT_rich Low_complexity Low_complexity 1 23 0 2441 78 0 7 chr13 6466264 6466570 -95406599 + AluY SINE Alu 1 304 -7 1073 160 48 21 chr13 6466582 6466770 -95406399 + AluSc SINE Alu 99 291 -18 1931 166 10 0 chr13 6466809 6467104 -95406065 + AluSx SINE Alu 1 298 -14 21 57 0 0 chr13 6467372 6467407 -95405762 + AT_rich Low_complexity Low_complexity 1 35 0 2950 192 23 158 chr13 6468362 6469651 -95403518 + MER52A LTR ERV1 641 1755 0 2143 114 0 13 chr13 6472566 6472872 -95400297 + AluSx SINE Alu 1 302 -10 180 138 0 0 chr13 6473270 6473299 -95399870 + L2 LINE L2 3285 3313 0 334 316 53 18 chr13 6473329 6473500 -95399669 - MIR SINE MIR -7 255 79 360 294 28 0 chr13 6474688 6474797 -95398372 + MER81 DNA DNA 3 114 0 243 347 9 110 chr13 6474894 6475113 -95398056 + L2 LINE L2 2990 3186 -86 221 56 0 28 chr13 6475699 6475735 -95397434 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1310 118 68 27 chr13 6475851 6476072 -95397097 + MER30 DNA MER1_type 1 230 0 635 266 234 13 chr13 6476669 6477063 -95396106 + LTR33A LTR ERVL 5 485 -38 381 165 106 0 chr13 6477264 6477349 -95395820 - MER20 DNA MER1_type -31 188 95 552 239 9 0 chr13 6477446 6477555 -95395614 - FLAM_A SINE Alu -21 121 12 1867 163 3 6 chr13 6477597 6477910 -95395259 - AluSx SINE Alu 0 312 1 188 355 45 18 chr13 6480054 6480164 -95393005 + MIR SINE MIR 19 131 -77 2061 133 0 0 chr13 6481110 6481412 -95391757 + AluSg SINE Alu 1 302 -8 908 138 6 94 chr13 6482361 6482542 -95390627 - FRAM SINE Alu -1 165 1 229 309 56 40 chr13 6482588 6482714 -95390455 - L2 LINE L2 0 3272 3145 7233 163 28 27 chr13 6483137 6485174 -95387995 + L1MA8 LINE L1 3868 5923 -368 566 165 18 9 chr13 6485939 6486048 -95387121 + MER119 DNA MER1_type 474 583 0 389 230 216 14 chr13 6486726 6486865 -95386304 - MIR SINE MIR -83 179 13 1317 189 24 8 chr13 6487024 6487278 -95385891 + L1M3 LINE L1 5428 5685 -498 1784 114 67 0 chr13 6487279 6487620 -95385549 - L1PA11 LINE L1 -3 6171 5808 29 0 0 0 chr13 6488045 6488074 -95385095 + AT_rich Low_complexity Low_complexity 1 29 0 647 227 0 7 chr13 6488075 6488216 -95384953 - FLAM_C SINE Alu -2 141 2 2148 108 3 0 chr13 6490304 6490600 -95382569 + AluSg SINE Alu 1 297 -13 1617 225 36 0 chr13 6490939 6491272 -95381897 - MER7A DNA MER2_type -1 345 3 560 316 90 63 chr13 6491451 6492119 -95381050 - L1M4 LINE L1 -2985 3161 2476 1658 208 73 32 chr13 6492176 6492247 -95380922 + L1ME3A LINE L1 5391 5458 -712 2468 190 48 18 chr13 6492247 6492752 -95380417 + MLT2B1 LTR ERVL 1 520 0 1658 208 73 32 chr13 6492752 6492884 -95380285 + L1ME3A LINE L1 5458 5583 -587 1489 206 94 133 chr13 6492884 6493641 -95379528 + LTR8A LTR ERV1 1 727 0 1658 208 73 32 chr13 6493641 6493969 -95379200 + L1ME3A LINE L1 5583 5945 -225 998 180 46 14 chr13 6493969 6494186 -95378983 + AluJo SINE Alu 81 304 -8 613 241 116 15 chr13 6494186 6494385 -95378784 + L1ME3A LINE L1 5952 6170 0 442 291 84 11 chr13 6494485 6494664 -95378505 - MIR SINE MIR -32 230 39 1326 157 17 8 chr13 6495503 6495739 -95377430 - L1MA6 LINE L1 -231 6069 5832 1242 106 55 0 chr13 6495739 6495934 -95377235 + L1MA6 LINE L1 6091 6300 0 2142 117 0 0 chr13 6495943 6496252 -95376917 + AluSc SINE Alu 1 309 0 530 301 11 22 chr13 6497616 6497799 -95375370 + MER5A DNA MER1_type 3 183 -6 239 242 32 0 chr13 6500296 6500358 -95372811 + LTR67 LTR ERVL 4 67 -490 738 249 47 9 chr13 6501709 6501922 -95371247 + MER58A DNA MER1_type 1 221 -3 2327 65 0 7 chr13 6502261 6502555 -95370614 + AluY SINE Alu 1 292 -19 2017 113 0 7 chr13 6502766 6503071 -95370098 + AluSg SINE Alu 1 303 0 469 0 0 71 chr13 6503103 6503173 -95369996 - L1PA6 LINE L1 0 6154 6090 4798 240 44 23 chr13 6503602 6503975 -95369194 + L1M4 LINE L1 11 375 -6167 1726 149 43 4 chr13 6503975 6504256 -95368913 - AluSx SINE Alu -20 292 1 4798 240 44 23 chr13 6504256 6505127 -95368042 + L1M4 LINE L1 375 1281 -5261 189 315 176 23 chr13 6505128 6505474 -95367695 - L2 LINE L2 -694 2620 2222 1417 188 41 80 chr13 6505678 6506040 -95367129 + MLT1A1 LTR MaLR 1 348 -17 437 217 19 9 chr13 6506054 6506160 -95367009 + MER53 DNA DNA 34 140 -49 421 306 56 19 chr13 6507382 6507542 -95365627 + MIR SINE MIR 1 166 -96 767 186 70 12 chr13 6509444 6509616 -95363553 - MER53 DNA DNA 0 189 8 248 247 161 21 chr13 6510253 6510346 -95362823 - L3 LINE CR1 -375 1202 1097 1929 135 0 13 chr13 6510356 6510660 -95362509 + AluSx SINE Alu 1 300 -12 186 395 0 12 chr13 6510799 6510885 -95362284 - L3 LINE CR1 -634 943 859 809 108 0 17 chr13 6510919 6511039 -95362130 - FLAM_C SINE Alu -19 124 7 2865 3 0 0 chr13 6512928 6513244 -95359925 - AluYb8 SINE Alu -2 316 1 185 378 22 0 chr13 6513496 6513586 -95359583 + MIR SINE MIR 57 148 -114 293 316 75 23 chr13 6513739 6513913 -95359256 + L1MC/D LINE L1 5533 5715 -2093 25 0 0 0 chr13 6514054 6514079 -95359090 + AT_rich Low_complexity Low_complexity 1 25 0 851 206 16 22 chr13 6514085 6514269 -95358900 - AluJo SINE Alu -10 302 120 180 0 0 0 chr13 6514445 6514465 -95358704 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 374 254 90 8 chr13 6515955 6516089 -95357080 + L1MA9 LINE L1 5996 6140 -172 384 340 107 40 chr13 6516344 6516948 -95356221 + L2 LINE L2 2639 3269 -3 466 322 84 10 chr13 6517227 6517429 -95355740 + MIR SINE MIR 12 228 -34 250 257 14 57 chr13 6517478 6517548 -95355621 - MIR SINE MIR -180 82 16 724 251 33 5 chr13 6518143 6518358 -95354811 - L1PA16 LINE L1 -1 6165 5945 331 56 0 19 chr13 6518500 6518554 -95354615 - AluSc SINE Alu 0 299 247 521 291 132 24 chr13 6520409 6520660 -95352509 - L2 LINE L2 -5 3308 3031 * 526 269 59 90 chr13 6520630 6520687 -95352482 + MIR SINE MIR 14 71 -191 1911 186 38 28 chr13 6520687 6521084 -95352085 + MER57A LTR ERV1 1 401 -2 526 269 59 90 chr13 6521084 6521282 -95351887 + MIR SINE MIR 71 261 -1 2475 139 67 5 chr13 6521309 6521755 -95351414 + L1MB2 LINE L1 5689 6162 -9 235 297 59 30 chr13 6521850 6521951 -95351218 - MER91C DNA MER1_type -28 112 9 510 264 76 156 chr13 6521988 6522591 -95350578 - LTR67 LTR ERVL -1 556 2 209 273 61 68 chr13 6523147 6523279 -95349890 - L2 LINE L2 -1429 1885 1755 367 323 83 0 chr13 6524261 6524394 -95348775 + MIR SINE MIR 93 236 -26 1242 254 59 67 chr13 6524706 6525230 -95347939 - MLT2B1 LTR ERVL 0 520 1 3306 171 11 19 chr13 6526139 6526770 -95346399 + L1PA13 LINE L1 4127 4754 -1392 5555 98 44 43 chr13 6526770 6527779 -95345390 + L1PA13 LINE L1 5151 6161 -2 3306 171 11 19 chr13 6527779 6527791 -95345378 + L1PA13 LINE L1 4754 4765 -1381 1935 123 3 0 chr13 6527800 6528084 -95345085 + AluSx SINE Alu 23 307 -5 433 320 39 0 chr13 6529357 6529485 -95343684 + MIR SINE MIR 71 203 -59 556 330 56 26 chr13 6529705 6529938 -95343231 - MIR SINE MIR -2 260 21 1376 187 88 38 chr13 6530742 6531045 -95342124 - L1MD3 LINE L1 -232 7763 7440 2008 194 14 6 chr13 6531045 6531405 -95341764 - MLT1A1 LTR MaLR -2 363 1 1376 187 88 38 chr13 6531405 6531443 -95341726 - L1MD3 LINE L1 -555 7440 7405 239 323 135 51 chr13 6531628 6532319 -95340850 - L2 LINE L2 -2358 956 208 639 174 25 0 chr13 6532369 6532490 -95340679 + L1MA8 LINE L1 6164 6287 -4 219 341 81 8 chr13 6532500 6532623 -95340546 - L2 LINE L2 -1 3271 3140 249 83 0 0 chr13 6533039 6533075 -95340094 + (CA)n Simple_repeat Simple_repeat 1 36 0 299 264 72 42 chr13 6533177 6533344 -95339825 - MIR3 SINE MIR -16 192 21 377 287 31 47 chr13 6533755 6533884 -95339285 + MIR SINE MIR 8 134 -128 5140 133 9 56 chr13 6533902 6534747 -95338422 - L1PA14 LINE L1 -1 6160 5375 1536 150 87 0 chr13 6534747 6535001 -95338168 - AluSg SINE Alu -34 276 1 5140 133 9 56 chr13 6535001 6535743 -95337426 - L1PA14 LINE L1 -786 5375 4600 2087 157 16 0 chr13 6535743 6536107 -95337062 + L1P LINE L1 3958 4327 -1819 202 299 102 16 chr13 6536108 6536235 -95336934 + MIR SINE MIR 125 262 0 219 266 0 110 chr13 6536443 6536511 -95336658 - L2 LINE L2 -20 3293 3239 2106 93 0 0 chr13 6536511 6536816 -95336353 + AluY SINE Alu 1 305 0 219 266 0 110 chr13 6536816 6536855 -95336314 - L2 LINE L2 -74 3239 3197 376 294 9 0 chr13 6537352 6537461 -95335708 + MIR SINE MIR 116 225 -37 1521 48 0 5 chr13 6538512 6538698 -95334471 + L1PA3 LINE L1 5968 6152 -3 255 61 0 0 chr13 6538742 6538775 -95334394 + (GA)n Simple_repeat Simple_repeat 1 33 0 595 138 0 0 chr13 6538775 6538862 -95334307 + LTR34 LTR ERV1 582 668 -31 442 243 115 40 chr13 6539121 6539269 -95333900 - L2 LINE L2 -1 3312 3154 368 284 12 77 chr13 6539977 6540146 -95333023 - MIR3 SINE MIR 0 208 51 182 278 33 44 chr13 6540161 6540251 -95332918 + L2 LINE L2 3184 3272 0 689 259 96 23 chr13 6540253 6540473 -95332696 - MIR SINE MIR -26 236 1 247 283 30 50 chr13 6542222 6542321 -95330848 - MIR3 SINE MIR -27 181 85 2077 118 7 0 chr13 6542601 6542906 -95330263 - AluSx SINE Alu -5 307 1 1237 131 10 5 chr13 6544040 6544239 -95328930 - AluJb SINE Alu 0 312 113 214 345 52 17 chr13 6544284 6544400 -95328769 - MIR SINE MIR -23 239 120 722 257 53 18 chr13 6544450 6544668 -95328501 + MIR SINE MIR 5 223 -39 193 271 21 0 chr13 6545373 6545421 -95327748 - L3 LINE CR1 -667 910 862 362 228 11 33 chr13 6545453 6545545 -95327624 + MER5B DNA MER1_type 89 178 0 242 211 18 0 chr13 6546311 6546368 -95326801 + MER94 DNA DNA 2 59 -75 320 307 161 21 chr13 6547433 6547713 -95325456 + L3 LINE CR1 1240 1558 -19 511 206 163 14 chr13 6548453 6548594 -95324575 + MIR SINE MIR 92 253 -9 1453 178 8 4 chr13 6549208 6549472 -95323697 + AluJo SINE Alu 18 282 -30 243 21 0 64 chr13 6549476 6549523 -95323646 + (CAA)n Simple_repeat Simple_repeat 2 45 0 246 372 0 12 chr13 6550266 6550352 -95322817 + MIR3 SINE MIR 113 197 -11 1240 178 26 42 chr13 6550547 6550811 -95322358 + MIR SINE MIR 2 261 -1 282 29 0 0 chr13 6550829 6550864 -95322305 + (GA)n Simple_repeat Simple_repeat 2 36 0 303 251 277 26 chr13 6550864 6550903 -95322266 - MIR SINE MIR -13 249 221 1871 161 0 3 chr13 6550903 6551201 -95321968 - AluJb SINE Alu -15 297 1 303 251 277 26 chr13 6551201 6551356 -95321813 - MIR SINE MIR -41 221 6 2194 104 7 0 chr13 6553507 6553814 -95319355 - AluSx SINE Alu -3 309 1 2794 13 0 0 chr13 6554474 6554789 -95318380 + AluYb8 SINE Alu 1 315 -3 604 251 161 5 chr13 6556841 6557040 -95316129 + MIR SINE MIR 33 262 0 481 240 281 20 chr13 6558223 6558419 -95314750 + MIR SINE MIR 1 247 -15 1622 185 0 7 chr13 6559067 6559359 -95313810 + AluJo SINE Alu 1 290 -22 2218 97 3 0 chr13 6560551 6560849 -95312320 + AluSq SINE Alu 3 301 -12 952 124 7 0 chr13 6560849 6560986 -95312183 + AluSq SINE Alu 137 274 -39 198 128 0 0 chr13 6560997 6561036 -95312133 + (GGGA)n Simple_repeat Simple_repeat 4 42 0 256 316 140 35 chr13 6561529 6561700 -95311469 + MIR SINE MIR 9 197 -65 1731 130 0 11 chr13 6561846 6562116 -95311053 - AluSx SINE Alu -11 301 35 242 139 0 0 chr13 6563133 6563169 -95310000 - U2 snRNA snRNA -152 36 1 224 398 17 0 chr13 6563606 6563724 -95309445 + MIR SINE MIR 20 139 -123 947 174 6 0 chr13 6566356 6566523 -95306646 + FRAM SINE Alu 2 169 -7 517 237 26 84 chr13 6566705 6566895 -95306274 + MIR3 SINE MIR 19 197 -11 451 255 226 41 chr13 6566879 6567507 -95305662 + L2 LINE L2 2479 3263 -50 * 233 95 0 24 chr13 6567510 6567552 -95305617 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 560 68 0 0 chr13 6567652 6567726 -95305443 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 228 198 185 25 chr13 6567828 6567909 -95305260 + MIR SINE MIR 83 176 -86 841 144 8 15 chr13 6568018 6568150 -95305019 + FLAM_C SINE Alu 1 131 -2 513 275 8 8 chr13 6568176 6568307 -95304862 - MIR SINE MIR -14 248 118 315 254 0 0 chr13 6568846 6568913 -95304256 + L2 LINE L2 3201 3267 -5 373 278 26 17 chr13 6568920 6569035 -95304134 - MIR SINE MIR -69 139 24 2550 49 0 0 chr13 6569127 6569433 -95303736 - AluY SINE Alu -5 306 1 23 33 0 0 chr13 6569911 6569941 -95303228 + AT_rich Low_complexity Low_complexity 1 30 0 846 178 79 35 chr13 6569959 6570161 -95303008 - L1MB2 LINE L1 -36 6135 5925 22 0 0 0 chr13 6571302 6571324 -95301845 + AT_rich Low_complexity Low_complexity 1 22 0 1672 163 3 0 chr13 6571324 6571607 -95301562 - AluJo SINE Alu -22 290 7 879 209 0 16 chr13 6571813 6571995 -95301174 - AluJb SINE Alu -4 308 130 603 213 124 6 chr13 6572928 6573083 -95300086 - MER5A DNA MER1_type -6 183 4 282 313 42 7 chr13 6573141 6573285 -95299884 + MER103 DNA DNA 6 154 -12 2283 91 0 0 chr13 6573507 6573803 -95299366 + AluSx SINE Alu 1 296 -16 312 360 85 0 chr13 6574168 6574379 -95298790 - MIR SINE MIR -8 254 26 411 56 0 0 chr13 6574426 6574480 -95298689 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1486 195 14 34 chr13 6574480 6574636 -95298533 - AluJo SINE Alu -26 286 137 1849 144 0 63 chr13 6574636 6574955 -95298214 - AluJo SINE Alu -11 301 3 1486 195 14 34 chr13 6574955 6575090 -95298079 - AluJo SINE Alu -175 137 1 260 228 120 0 chr13 6575234 6575326 -95297843 - L1ME4a LINE L1 -13 6108 6006 557 60 0 12 chr13 6576061 6576144 -95297025 + (TC)n Simple_repeat Simple_repeat 2 83 0 246 264 210 24 chr13 6577789 6577956 -95295213 + MIR SINE MIR 40 237 -25 956 110 0 41 chr13 6578912 6579058 -95294111 - FLAM_C SINE Alu -3 140 1 302 240 88 104 chr13 6579345 6579537 -95293632 - MER5A DNA MER1_type 0 189 1 2110 121 0 0 chr13 6580720 6581002 -95292167 + AluSx SINE Alu 1 282 -30 1295 152 110 132 chr13 6581045 6581507 -95291662 + L1MB2 LINE L1 5481 5932 -239 2137 73 42 35 chr13 6581668 6581955 -95291214 + AluY SINE Alu 1 289 -22 1960 112 4 0 chr13 6581953 6582220 -95290949 + AluSg1 SINE Alu 27 294 -15 * 225 0 0 0 chr13 6582810 6582835 -95290334 + (TA)n Simple_repeat Simple_repeat 2 26 0 799 22 0 0 chr13 6582835 6582926 -95290243 - L1PA5 LINE L1 -16 6138 6048 2436 51 0 29 chr13 6586764 6587077 -95286092 - AluY SINE Alu -7 304 1 22 0 0 0 chr13 6587209 6587231 -95285938 + AT_rich Low_complexity Low_complexity 1 22 0 239 313 69 19 chr13 6587299 6587459 -95285710 - L1M2 LINE L1 -4392 2457 2290 567 223 23 0 chr13 6587462 6587592 -95285577 - L1MA10 LINE L1 -1 6333 6201 2170 107 0 0 chr13 6587592 6587873 -95285296 + AluSg SINE Alu 1 281 -29 7016 226 76 15 chr13 6587926 6590863 -95282306 - L1ME4a LINE L1 -151 6015 2894 991 140 18 12 chr13 6590864 6591028 -95282141 + THE1C LTR MaLR 1 165 -210 383 202 50 20 chr13 6591952 6592051 -95281118 + MLT1C-int LTR MaLR 1269 1370 -1 1203 199 205 13 chr13 6592052 6592438 -95280731 + MLT1C LTR MaLR 1 460 -7 1129 115 0 12 chr13 6592520 6592685 -95280484 + L1PA8 LINE L1 6001 6163 -9 812 168 0 0 chr13 6594068 6594199 -95278970 + FLAM_C SINE Alu 3 133 0 1978 167 0 0 chr13 6594232 6594538 -95278631 + AluJb SINE Alu 1 306 -6 331 346 82 0 chr13 6594923 6595105 -95278064 + MIR SINE MIR 14 210 -52 1855 171 0 7 chr13 6595361 6595660 -95277509 - AluJb SINE Alu -15 297 1 780 253 127 0 chr13 6595660 6595897 -95277272 + MER58B DNA MER1_type 75 341 0 218 56 28 0 chr13 6597036 6597072 -95276097 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 386 239 57 18 chr13 6597152 6597361 -95275808 - Charlie7 DNA MER1_type 0 2612 2317 21 0 0 0 chr13 6597368 6597389 -95275780 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr13 6597632 6597662 -95275507 + (CA)n Simple_repeat Simple_repeat 2 31 0 228 125 0 0 chr13 6597896 6597928 -95275241 - Charlie7 DNA MER1_type -1479 1133 1102 184 244 78 44 chr13 6598476 6598566 -95274603 + L2 LINE L2 3164 3256 -16 218 260 10 62 chr13 6598568 6598664 -95274505 + (TGGG)n Simple_repeat Simple_repeat 2 92 0 2880 162 53 18 chr13 6599331 6599893 -95273276 + L1MB3 LINE L1 5601 6182 -1 21 0 0 0 chr13 6599893 6599914 -95273255 + AT_rich Low_complexity Low_complexity 1 21 0 1483 158 11 67 chr13 6600067 6600217 -95272952 - AluJb SINE Alu -24 288 131 192 40 0 0 chr13 6600217 6600242 -95272927 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1889 114 42 0 chr13 6600243 6600507 -95272662 - AluSq SINE Alu -30 283 9 1483 158 11 67 chr13 6600507 6600638 -95272531 - AluJb SINE Alu -180 132 21 731 135 92 0 chr13 6602759 6602896 -95270273 - LTR12 LTR ERV1 0 714 270 2831 182 118 39 chr13 6602896 6603533 -95269636 - LTR12 LTR ERV1 0 688 2 860 206 34 48 chr13 6603716 6604008 -95269161 - pTR5 LTR ERV1 -1410 1028 741 268 350 61 19 chr13 6604650 6604864 -95268305 - L1ME LINE L1 -523 5598 5376 207 191 0 0 chr13 6605079 6605126 -95268043 + T-rich Low_complexity Low_complexity 1 47 0 589 264 96 42 chr13 6605160 6605624 -95267545 - L1ME LINE L1 -1487 4659 4167 1636 170 3 23 chr13 6605624 6605930 -95267239 - AluJo SINE Alu -12 300 1 589 264 96 42 chr13 6605930 6605942 -95267227 - L1ME LINE L1 -1979 4167 4157 5354 59 6 1 chr13 6606184 6606849 -95266320 - L1PA7 LINE L1 -15 6139 5472 293 271 67 36 chr13 6607122 6607323 -95265846 - L1ME1 LINE L1 -204 5962 5758 185 255 43 0 chr13 6607472 6607519 -95265650 + L2 LINE L2 3249 3297 -16 785 281 166 31 chr13 6607569 6608984 -95264185 - L1ME1 LINE L1 -598 5572 3953 21 36 0 0 chr13 6609057 6609085 -95264084 + AT_rich Low_complexity Low_complexity 1 28 0 1339 176 4 4 chr13 6609274 6609535 -95263634 - L1MA5A LINE L1 -923 5223 4963 * 5757 139 34 13 chr13 6609520 6610101 -95263068 + L1MA5A LINE L1 5209 5827 -470 279 0 0 0 chr13 6610101 6610132 -95263037 + (CA)n Simple_repeat Simple_repeat 2 32 0 5757 139 34 13 chr13 6610132 6610584 -95262585 + L1MA5A LINE L1 5827 6268 -29 28 0 0 0 chr13 6610596 6610624 -95262545 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr13 6612636 6612665 -95260504 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1907 173 42 75 chr13 6613811 6614239 -95258930 + MLT2D LTR ERVL 1 414 0 219 299 120 8 chr13 6615952 6616069 -95257100 + MIR SINE MIR 81 210 -52 1766 79 9 0 chr13 6616260 6616488 -95256681 + MER30 DNA MER1_type 1 230 0 2203 168 23 44 chr13 6617268 6617703 -95255466 + MSTB LTR MaLR 1 426 0 1330 87 0 12 chr13 6617981 6618153 -95255016 - AluSx SINE Alu -142 170 1 5039 126 23 88 chr13 6618153 6619169 -95254000 + Tigger3b DNA MER2_type 282 1231 0 4046 208 45 13 chr13 6619178 6620329 -95252840 + L1MB8 LINE L1 4316 5505 -675 1111 176 24 0 chr13 6620329 6620539 -95252630 + L1MB2 LINE L1 5950 6164 -7 3451 161 24 15 chr13 6620569 6621228 -95251941 + L1MB8 LINE L1 5514 6178 0 265 108 0 0 chr13 6621482 6621519 -95251650 - U2 snRNA snRNA -151 37 1 1726 185 18 0 chr13 6621835 6622121 -95251048 + AluJo SINE Alu 1 291 -21 1002 171 37 180 chr13 6622121 6622250 -95250919 + MLT1A2 LTR MaLR 34 89 -285 1461 133 41 5 chr13 6622250 6622468 -95250701 + AluJo SINE Alu 14 239 -73 1002 171 37 180 chr13 6622468 6622665 -95250504 + MLT1A2 LTR MaLR 89 313 -61 1704 140 92 4 chr13 6622924 6623196 -95249973 + AluSx SINE Alu 1 296 -16 267 301 21 11 chr13 6624197 6624290 -95248879 + L2 LINE L2 3179 3272 0 211 64 21 43 chr13 6624715 6624762 -95248407 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 4572 219 135 108 chr13 6624813 6625109 -95248060 + L1MD1 LINE L1 2620 2906 -3240 2278 118 0 6 chr13 6625109 6625422 -95247747 + AluSx SINE Alu 1 311 -1 4572 219 135 108 chr13 6625422 6626582 -95246587 + L1MD1 LINE L1 2906 4033 -2113 342 0 0 0 chr13 6626582 6626620 -95246549 + (CA)n Simple_repeat Simple_repeat 1 38 0 4572 219 135 108 chr13 6626620 6626688 -95246481 + L1MD1 LINE L1 4033 4098 -2048 1379 113 0 10 chr13 6626688 6626892 -95246277 + AluSc SINE Alu 83 284 -25 4572 219 135 108 chr13 6626892 6627731 -95245438 + L1MD1 LINE L1 4098 5261 -885 1061 187 93 45 chr13 6627728 6628017 -95245152 + L1MD1 LINE L1 5855 6157 -85 * 186 143 0 0 chr13 6630996 6631031 -95242138 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 28 71 0 0 chr13 6631094 6631150 -95242019 + AT_rich Low_complexity Low_complexity 1 56 0 200 111 28 0 chr13 6632115 6632151 -95241018 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 195 197 61 76 chr13 6632775 6632841 -95240328 - MIR SINE MIR -21 241 177 537 288 113 0 chr13 6632847 6633007 -95240162 + MER5B DNA MER1_type 1 178 0 820 207 0 0 chr13 6633019 6633169 -95240000 + MLT1A1 LTR MaLR 1 150 -215 675 238 33 0 chr13 6633249 6633400 -95239769 - MER5A DNA MER1_type 0 189 34 303 310 93 81 chr13 6633474 6633797 -95239372 + L2 LINE L2 2896 3222 -50 204 301 118 0 chr13 6635266 6635359 -95237810 + MIR SINE MIR 31 134 -128 467 269 39 19 chr13 6635399 6635555 -95237614 - MER105 DNA DNA -21 183 25 251 280 80 0 chr13 6636225 6636300 -95236869 + MIR SINE MIR 62 142 -66 1709 148 3 27 chr13 6636572 6636869 -95236300 - AluJo SINE Alu -22 290 1 608 229 7 33 chr13 6637205 6637358 -95235811 + MIR SINE MIR 104 252 -10 2082 112 7 0 chr13 6639443 6639746 -95233423 + AluSx SINE Alu 1 305 -7 1212 219 33 17 chr13 6640268 6640570 -95232599 + L1MC2 LINE L1 6029 6335 -9 301 241 68 30 chr13 6640571 6640704 -95232465 + L1ME4a LINE L1 5982 6119 -2 274 308 64 41 chr13 6641133 6641305 -95231864 + MIR SINE MIR 81 256 -6 252 339 54 32 chr13 6641408 6641594 -95231575 + MIR3 SINE MIR 3 192 -16 590 329 57 5 chr13 6641971 6642181 -95230988 - MIR SINE MIR -25 237 17 2416 44 3 19 chr13 6642390 6642705 -95230464 + AluY SINE Alu 1 310 -1 180 207 17 69 chr13 6642928 6642986 -95230183 - MIR3 SINE MIR -24 184 130 350 275 11 11 chr13 6643219 6643310 -95229859 + MIR SINE MIR 172 262 0 3604 134 28 13 chr13 6643708 6644322 -95228847 + L1MB3 LINE L1 5559 6181 -2 352 250 130 29 chr13 6644736 6644838 -95228331 + MIR SINE MIR 45 154 -66 1821 132 35 0 chr13 6644843 6645131 -95228038 + AluSq SINE Alu 3 300 -13 1045 221 38 38 chr13 6645139 6645401 -95227768 + MLT1E LTR MaLR 332 593 0 1807 240 73 22 chr13 6645403 6645949 -95227220 - L1ME3 LINE L1 -104 6058 5485 364 250 23 0 chr13 6645952 6646040 -95227129 + MIR SINE MIR 117 206 -56 223 222 123 37 chr13 6646097 6646178 -95226991 - MIR SINE MIR -166 96 9 6310 178 40 3 chr13 6646523 6647983 -95225186 + ERVL LTR ERVL 4130 5698 -66 7511 37 8 6 chr13 6648070 6649532 -95223637 - L1PA4 LINE L1 -3 6152 4688 1901 173 42 75 chr13 6651143 6651571 -95221598 - MLT2D LTR ERVL 0 414 1 257 214 57 29 chr13 6652520 6652590 -95220579 - LTR33 LTR ERVL -2 519 448 559 262 115 16 chr13 6652700 6652883 -95220286 - LTR33 LTR ERVL -319 202 2 188 280 217 35 chr13 6653125 6653268 -95219901 - L2 LINE L2 -10 3262 3094 684 168 18 0 chr13 6653426 6653539 -95219630 - FLAM_C SINE Alu -18 115 1 774 177 8 0 chr13 6653612 6653736 -95219433 + FLAM_C SINE Alu 2 126 -17 2293 92 0 0 chr13 6653752 6654058 -95219111 + AluSx SINE Alu 1 306 -6 360 229 14 0 chr13 6654125 6654195 -95218974 - L2 LINE L2 -18 3254 3184 2327 97 3 0 chr13 6654244 6654554 -95218615 + AluSp SINE Alu 1 311 -2 557 49 12 0 chr13 6654742 6654823 -95218346 + (CA)n Simple_repeat Simple_repeat 1 82 0 2008 188 261 12 chr13 6654919 6655521 -95217648 + Tigger3(Golem) DNA MER2_type 2278 3029 0 1101 204 92 55 chr13 6655536 6655938 -95217231 - MLT2B1 LTR ERVL -40 475 13 274 239 42 14 chr13 6655946 6656017 -95217152 - HERVL-B1 LTR ERVL 0 5654 5582 775 72 0 0 chr13 6656021 6656118 -95217051 + L1PA4 LINE L1 2 98 -6048 * 39032 38 9 1 chr13 6656116 6661606 -95211563 + L1PA4 LINE L1 623 6152 -3 6310 173 31 9 chr13 6661693 6663858 -95209311 - ERVL LTR ERVL -66 5698 3433 1765 128 15 15 chr13 6663865 6664130 -95209039 - ERVL LTR ERVL -2909 2855 2591 * 3525 173 5 9 chr13 6664115 6664149 -95209020 - ERVL LTR ERVL -3432 2332 2299 1461 159 120 19 chr13 6664149 6664457 -95208712 + MER44D DNA MER2_type 1 609 0 3525 173 5 9 chr13 6664457 6665001 -95208168 - ERVL LTR ERVL -3465 2299 1756 835 211 0 0 chr13 6665032 6665188 -95207981 - FRAM SINE Alu -19 157 2 7769 207 70 10 chr13 6665188 6666838 -95206331 - ERVL LTR ERVL -4013 1751 2 291 143 0 57 chr13 6666839 6666909 -95206260 - MLT2B1 LTR ERVL 0 554 455 181 156 16 16 chr13 6666911 6666975 -95206194 + (TA)n Simple_repeat Simple_repeat 2 65 0 216 0 0 0 chr13 6666982 6667006 -95206163 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 2103 177 144 14 chr13 6667006 6667429 -95205740 - MLT2B1 LTR ERVL -42 478 1 583 82 27 49 chr13 6669299 6669482 -95203687 + (CA)n Simple_repeat Simple_repeat 1 179 0 553 83 29 51 chr13 6669501 6669858 -95203311 + (CA)n Simple_repeat Simple_repeat 1 348 0 389 141 34 40 chr13 6669924 6670101 -95203068 + (CA)n Simple_repeat Simple_repeat 1 176 0 268 142 43 43 chr13 6670123 6670285 -95202884 + (CA)n Simple_repeat Simple_repeat 1 162 0 332 144 11 61 chr13 6670345 6670526 -95202643 + (CA)n Simple_repeat Simple_repeat 1 172 0 273 130 24 49 chr13 6670579 6670702 -95202467 + (CA)n Simple_repeat Simple_repeat 1 120 0 340 190 33 37 chr13 6670728 6671201 -95201968 + (CA)n Simple_repeat Simple_repeat 1 471 0 188 341 57 0 chr13 6672408 6672531 -95200638 + L2 LINE L2 2927 3056 -257 247 295 48 19 chr13 6674147 6674252 -95198917 + MIR SINE MIR 116 223 -39 219 132 0 53 chr13 6677948 6678024 -95195145 + (GAATG)n Simple_repeat Simple_repeat 3 74 0 336 276 45 35 chr13 6678621 6678776 -95194393 + MLT1E3 LTR MaLR 243 406 -218 180 216 0 0 chr13 6679500 6679551 -95193618 + T-rich Low_complexity Low_complexity 1 51 0 186 156 0 0 chr13 6680180 6680212 -95192957 + L2 LINE L2 3241 3272 0 232 272 136 19 chr13 6680399 6680502 -95192667 - L1MC4 LINE L1 -1 8041 7927 396 371 84 16 chr13 6680953 6681322 -95191847 - L1ME LINE L1 -472 5698 5305 388 318 95 56 chr13 6681486 6681714 -95191455 - L1ME LINE L1 -838 5308 5090 2055 110 40 0 chr13 6681714 6682014 -95191155 + AluSx SINE Alu 1 312 0 388 318 95 56 chr13 6682014 6682354 -95190815 - L1ME LINE L1 -1056 5090 4765 3931 179 51 60 chr13 6682354 6683317 -95189852 - LTR13 LTR ERVK 0 954 1 388 318 95 56 chr13 6683317 6684019 -95189150 - L1ME LINE L1 -1381 4765 3987 197 132 26 0 chr13 6685801 6685839 -95187330 + (TA)n Simple_repeat Simple_repeat 1 39 0 1304 96 0 119 chr13 6685858 6686119 -95187050 - AluSc SINE Alu -7 302 73 1464 172 62 0 chr13 6686139 6686395 -95186774 - L1MC3 LINE L1 -830 6955 6684 1330 262 51 0 chr13 6686399 6686811 -95186358 + L1MB8 LINE L1 1046 1478 -4906 677 192 7 34 chr13 6686812 6686958 -95186211 - MER4D LTR ERV1 0 903 762 2931 117 60 7 chr13 6686964 6687418 -95185751 + MER9 LTR ERVK 34 511 0 2320 174 30 111 chr13 6687418 6688119 -95185050 - MER4E LTR ERV1 -135 644 1 1146 261 127 40 chr13 6688126 6688904 -95184265 + L1MB8 LINE L1 1632 2477 -4086 712 182 15 15 chr13 6688918 6689050 -95184119 + FLAM_C SINE Alu 1 132 -1 8034 66 6 5 chr13 6689063 6690069 -95183100 + LTR13 LTR ERVK 1 1007 0 1128 101 6 24 chr13 6690069 6690237 -95182932 + AluSg/x SINE Alu 139 303 -7 10660 218 36 36 chr13 6690238 6690398 -95182771 + L1MB8 LINE L1 2449 2608 -3962 1978 149 0 0 chr13 6690398 6690700 -95182469 + AluSg SINE Alu 1 302 -8 10660 218 36 36 chr13 6690700 6692313 -95180856 + L1MB8 LINE L1 2608 4220 -2350 2185 105 0 0 chr13 6692313 6692607 -95180562 + AluSg SINE Alu 1 294 -16 10660 218 36 36 chr13 6692607 6694805 -95178364 + L1MB8 LINE L1 4220 6570 0 379 253 105 49 chr13 6694946 6695250 -95177919 + L1M4 LINE L1 3673 3993 -2153 489 310 104 51 chr13 6695276 6695727 -95177442 + REP3 LTR ERV 1 475 -87 21 36 0 0 chr13 6696025 6696053 -95177116 + AT_rich Low_complexity Low_complexity 1 28 0 438 244 0 0 chr13 6696565 6696655 -95176514 + LTR33A LTR ERVL 434 523 0 363 255 27 53 chr13 6696992 6697180 -95175989 + L1P4 LINE L1 4886 5068 -1078 1972 129 30 0 chr13 6697334 6697637 -95175532 + AluSx SINE Alu 1 312 0 335 305 48 32 chr13 6697678 6698011 -95175158 + L1P4 LINE L1 5254 5598 -568 1311 214 38 70 chr13 6698047 6698444 -95174725 - MLT1B LTR MaLR 0 390 7 337 106 0 0 chr13 6699335 6699382 -95173787 - MLT1E1 LTR MaLR -423 231 185 1065 242 36 4 chr13 6700343 6700664 -95172505 + MLT1A1 LTR MaLR 13 446 -21 477 200 62 31 chr13 6700808 6700938 -95172231 + MIR SINE MIR 50 183 -79 864 177 29 0 chr13 6701875 6702050 -95171119 + L1MB7 LINE L1 5288 5467 -707 698 155 8 25 chr13 6702067 6702306 -95170863 + GA-rich Low_complexity Low_complexity 1 234 0 447 188 21 31 chr13 6702472 6702568 -95170601 + L1MB7 LINE L1 5484 5578 -602 1046 233 43 30 chr13 6702608 6702909 -95170260 + L1MB7 LINE L1 5819 6123 -61 199 220 169 0 chr13 6702928 6702987 -95170182 - MIR SINE MIR -94 168 100 609 221 16 0 chr13 6707793 6707914 -95165255 - MER58B DNA MER1_type 0 341 219 1564 84 23 28 chr13 6707914 6708128 -95165041 + THE1B LTR MaLR 1 213 -151 1591 199 46 35 chr13 6709398 6709802 -95163367 + L1M2c LINE L1 1563 1974 -4875 1817 164 10 0 chr13 6709802 6710106 -95163063 + AluSx SINE Alu 3 309 -3 1591 199 46 35 chr13 6710106 6710133 -95163036 + L1M2c LINE L1 1974 1999 -4850 3597 176 11 28 chr13 6710148 6710251 -95162918 + L1M2c LINE L1 2230 2333 -4515 1734 163 10 7 chr13 6710251 6710552 -95162617 + AluSx SINE Alu 2 303 -9 3597 176 11 28 chr13 6710552 6711553 -95161616 + L1M2c LINE L1 2333 3319 -3529 1526 107 34 0 chr13 6711560 6711794 -95161375 + L1MA5 LINE L1 6056 6297 -3 1009 252 24 18 chr13 6711862 6712121 -95161048 - MLT1H LTR MaLR -248 301 1 4677 236 38 28 chr13 6712575 6713791 -95159378 + L1PA12 LINE L1 10 2319 -5265 3612 82 21 10 chr13 6713780 6714303 -95158866 + L1PA11 LINE L1 5259 5787 -387 * 21 0 0 0 chr13 6715010 6715031 -95158138 + AT_rich Low_complexity Low_complexity 1 21 0 2648 114 25 0 chr13 6715330 6715726 -95157443 + L1PA11 LINE L1 5769 6174 0 300 246 36 18 chr13 6715799 6715909 -95157260 - L1ME3 LINE L1 -2 6160 6049 * 2879 249 112 24 chr13 6715904 6716547 -95156622 - L1M4 LINE L1 -1130 5016 4431 1320 158 102 39 chr13 6716547 6716832 -95156337 - AluJo SINE Alu -9 303 1 2879 249 112 24 chr13 6716832 6717426 -95155743 - L1M4 LINE L1 -1715 4431 3670 189 222 22 0 chr13 6718197 6718242 -95154927 + MER5B DNA MER1_type 12 57 -121 558 43 0 0 chr13 6719528 6719597 -95153572 + (TA)n Simple_repeat Simple_repeat 2 70 0 2203 79 0 4 chr13 6719784 6720117 -95153052 + AluSq SINE Alu 5 336 0 460 290 192 30 chr13 6720121 6720559 -95152610 - L1ME4a LINE L1 -293 5828 5320 233 255 0 0 chr13 6721216 6721267 -95151902 + (TA)n Simple_repeat Simple_repeat 2 52 0 352 280 20 0 chr13 6723108 6723208 -95149961 + GA-rich Low_complexity Low_complexity 1 102 0 5528 152 52 11 chr13 6723342 6723607 -95149562 - L1MA8 LINE L1 0 6291 6039 2090 119 0 3 chr13 6723607 6723909 -95149260 + AluSq SINE Alu 3 303 -10 5528 152 52 11 chr13 6723909 6725098 -95148071 - L1MA8 LINE L1 -252 6039 4774 321 195 26 13 chr13 6725604 6725681 -95147488 + MER116 DNA Mariner 3 80 0 697 289 98 68 chr13 6725967 6726099 -95147070 - L1ME4a LINE L1 -847 5299 5172 1824 119 0 34 chr13 6726099 6726393 -95146776 - AluJb SINE Alu -15 297 14 465 164 0 0 chr13 6726337 6726404 -95146765 - AluJ/FLAM SINE Alu -243 69 3 * 697 289 98 68 chr13 6726404 6726731 -95146438 - L1ME4a LINE L1 -985 5161 4815 434 240 186 10 chr13 6726732 6726936 -95146233 - L1ME4a LINE L1 -1371 4775 4536 4485 267 110 35 chr13 6727055 6727109 -95146060 - L1ME LINE L1 -399 5763 5714 2053 132 3 0 chr13 6727109 6727405 -95145764 - AluSx SINE Alu -15 297 1 4485 267 110 35 chr13 6727405 6728735 -95144434 - L1ME LINE L1 -448 5714 4485 1821 148 0 30 chr13 6728735 6729039 -95144130 - AluJb SINE Alu -17 295 1 4485 267 110 35 chr13 6729039 6729274 -95143895 - L1ME LINE L1 -1677 4485 4269 333 0 0 0 chr13 6729274 6729311 -95143858 + (TG)n Simple_repeat Simple_repeat 1 37 0 4485 267 110 35 chr13 6729311 6729342 -95143827 - L1ME LINE L1 -1893 4269 4242 1944 143 13 7 chr13 6729342 6729650 -95143519 + AluSx SINE Alu 1 310 -2 4485 267 110 35 chr13 6729650 6730972 -95142197 - L1ME LINE L1 -1920 4242 2565 594 301 42 32 chr13 6731178 6731490 -95141679 - L1ME4a LINE L1 -1995 4151 3837 3252 135 22 15 chr13 6731579 6731891 -95141278 - L1PA16 LINE L1 -21 6145 5826 2383 104 0 0 chr13 6731891 6732198 -95140971 - AluSq SINE Alu -6 307 1 3252 135 22 15 chr13 6732198 6732425 -95140744 - L1PA16 LINE L1 -340 5826 5602 549 108 11 0 chr13 6732418 6732511 -95140658 - L1PA16 LINE L1 -774 5392 5299 * 1836 81 3 88 chr13 6732512 6732808 -95140361 - LTR14B LTR ERVK -321 287 17 385 309 121 18 chr13 6732901 6733066 -95140103 - MER5A DNA MER1_type 0 189 8 242 378 0 12 chr13 6733101 6733183 -95139986 - MER5A DNA MER1_type -31 158 78 2503 180 47 16 chr13 6733326 6733820 -95139349 - LTR22 LTR ERVK 0 509 1 1758 166 0 14 chr13 6733953 6734242 -95138927 + AluJo SINE Alu 1 285 -27 2356 101 0 3 chr13 6734253 6734561 -95138608 + AluSq SINE Alu 1 307 -6 435 287 161 36 chr13 6735757 6735980 -95137189 + MIR SINE MIR 2 252 -10 514 226 211 39 chr13 6736134 6736293 -95136876 - Charlie7 DNA MER1_type -3 2609 2479 2120 128 0 0 chr13 6736293 6736582 -95136587 - AluSc SINE Alu -20 289 1 514 226 211 39 chr13 6736582 6736759 -95136410 - Charlie7 DNA MER1_type -133 2479 2215 21 36 0 0 chr13 6736908 6736936 -95136233 + AT_rich Low_complexity Low_complexity 1 28 0 1843 150 37 0 chr13 6736941 6737235 -95135934 + AluSx SINE Alu 7 311 -1 1755 143 57 4 chr13 6737357 6737637 -95135532 - AluJo SINE Alu -16 296 2 649 173 7 115 chr13 6737660 6737799 -95135370 - FLAM_C SINE Alu -18 125 2 721 218 100 66 chr13 6737845 6738226 -95134943 - L1MC5 LINE L1 -285 7676 7283 2357 68 0 39 chr13 6738349 6738658 -95134511 - AluY SINE Alu -14 297 1 1812 155 4 0 chr13 6738699 6738996 -95134173 + AluJb SINE Alu 5 302 0 399 217 0 0 chr13 6739180 6739286 -95133883 + (TATATG)n Simple_repeat Simple_repeat 2 107 0 632 282 160 29 chr13 6739289 6739601 -95133568 + MER115 DNA AcHobo 54 406 -287 780 202 5 72 chr13 6739618 6739811 -95133358 + MER115 DNA AcHobo 514 693 0 1751 57 17 26 chr13 6740366 6740596 -95132573 + AluY SINE Alu 83 310 -1 882 200 24 29 chr13 6741043 6741213 -95131956 - FRAM SINE Alu -10 166 1 21 0 0 0 chr13 6741606 6741627 -95131542 + AT_rich Low_complexity Low_complexity 1 21 0 546 284 62 8 chr13 6741896 6742153 -95131016 + L2 LINE L2 2010 2280 -1034 1688 147 34 4 chr13 6742183 6742448 -95130721 - AluJb SINE Alu -39 273 1 1238 274 43 29 chr13 6742448 6743156 -95130013 - L1ME LINE L1 -4823 1257 536 786 316 41 64 chr13 6743300 6743831 -95129338 - L1ME LINE L1 -5539 531 13 21 0 0 0 chr13 6744020 6744041 -95129128 + AT_rich Low_complexity Low_complexity 1 21 0 1840 171 0 3 chr13 6744046 6744345 -95128824 + AluJb SINE Alu 1 298 -14 430 219 57 19 chr13 6744475 6744580 -95128589 + MLT1J2 LTR MaLR 3 111 -339 447 292 105 28 chr13 6744642 6744840 -95128329 + MLT1J2 LTR MaLR 238 448 -2 671 209 95 0 chr13 6745219 6745367 -95127802 + L1PA16 LINE L1 5999 6160 -6 1069 61 30 0 chr13 6745571 6745702 -95127467 - AluYb8 SINE Alu -183 135 1 1208 167 23 0 chr13 6745751 6745967 -95127202 - L1MA4 LINE L1 -5 6295 6075 982 211 22 64 chr13 6746030 6746355 -95126814 - L1MB7 LINE L1 0 6321 6032 2179 91 66 90 chr13 6746726 6747132 -95126037 + LTR14B LTR ERVK 1 608 0 446 255 0 0 chr13 6747132 6747230 -95125939 - MIR SINE MIR -106 156 59 535 239 92 0 chr13 6747323 6747453 -95125716 - MIR SINE MIR -65 197 56 1551 191 26 26 chr13 6749311 6749620 -95123549 + AluJo SINE Alu 2 310 -2 204 309 0 15 chr13 6749635 6749703 -95123466 - MIR3 SINE MIR -32 176 110 344 208 78 0 chr13 6749776 6749853 -95123316 - MIR SINE MIR -60 148 66 1803 171 0 17 chr13 6749990 6750283 -95122886 - AluJo SINE Alu -24 288 1 22 0 0 0 chr13 6750702 6750724 -95122445 + AT_rich Low_complexity Low_complexity 1 22 0 384 262 72 42 chr13 6750833 6751373 -95121796 + L1MC/D LINE L1 4934 5483 -750 931 145 14 0 chr13 6751395 6751540 -95121629 + FAM SINE Alu 28 174 -11 1070 89 0 7 chr13 6751598 6751733 -95121436 - AluSq/x SINE Alu -179 134 1 904 136 80 2 chr13 6751844 6752114 -95121055 - MER1B DNA MER1_type -2 337 1 1199 111 0 0 chr13 6752856 6753018 -95120151 + FRAM SINE Alu 1 162 -14 543 186 73 8 chr13 6753220 6753344 -95119825 - L1MB4 LINE L1 -1 6179 6048 2111 113 26 26 chr13 6753801 6754111 -95119058 + AluSg SINE Alu 1 310 0 332 266 165 13 chr13 6754271 6754429 -95118740 - MIR SINE MIR -79 183 2 256 231 37 74 chr13 6754445 6754553 -95118616 - L1MB4 LINE L1 -2330 5478 5375 1632 162 7 4 chr13 6754576 6754847 -95118322 - AluJb SINE Alu -40 272 1 819 118 8 8 chr13 6754855 6754974 -95118195 - FLAM_C SINE Alu -19 124 6 269 274 94 9 chr13 6757135 6757241 -95115928 - L2 LINE L2 -1 3271 3157 885 234 84 5 chr13 6757483 6757697 -95115472 - L1ME1 LINE L1 -8 6158 5928 23 33 0 0 chr13 6758006 6758036 -95115133 + AT_rich Low_complexity Low_complexity 1 30 0 1239 159 22 137 chr13 6758345 6758756 -95114413 + LTR49 LTR ERV1 1 485 -254 335 174 181 87 chr13 6758779 6758917 -95114252 + LTR48 LTR ERV1 607 757 -30 2230 228 74 54 chr13 6758994 6759640 -95113529 + MER21B LTR ERV1 98 756 -107 1508 91 106 0 chr13 6760071 6760279 -95112890 + MER30 DNA MER1_type 1 230 0 2167 110 0 0 chr13 6761025 6761336 -95111833 - AluSx SINE Alu 0 311 1 929 157 7 0 chr13 6761444 6761591 -95111578 + L1MB4 LINE L1 5333 5480 -694 1368 172 38 48 chr13 6761600 6761891 -95111278 + AluJb SINE Alu 1 288 -24 914 207 0 0 chr13 6761944 6762108 -95111061 + FRAM SINE Alu 8 171 -5 3917 167 34 1 chr13 6762132 6762782 -95110387 + L1MB4 LINE L1 5477 6151 -29 2516 69 0 0 chr13 6762782 6763085 -95110084 + AluY SINE Alu 1 303 -8 3917 167 34 1 chr13 6763085 6763112 -95110057 + L1MB4 LINE L1 6151 6176 -4 861 233 0 0 chr13 6764552 6764715 -95108454 - FRAM SINE Alu -3 163 1 730 192 98 39 chr13 6765769 6765972 -95107197 - MIR SINE MIR -43 219 5 2277 115 0 3 chr13 6766605 6766910 -95106259 - AluSx SINE Alu -7 305 2 195 129 0 0 chr13 6766911 6766942 -95106227 + (T)n Simple_repeat Simple_repeat 1 31 0 248 236 115 54 chr13 6766982 6767130 -95106039 + L1ME4a LINE L1 5964 6120 -1 2035 96 67 3 chr13 6767508 6767790 -95105379 + AluSx SINE Alu 1 300 -12 791 281 19 27 chr13 6768323 6768586 -95104583 - MIR SINE MIR 0 262 2 234 0 0 0 chr13 6769156 6769182 -95103987 + (TA)n Simple_repeat Simple_repeat 2 27 0 1954 163 0 16 chr13 6769285 6769598 -95103571 - AluJo SINE Alu -4 308 1 1945 103 59 7 chr13 6770308 6770623 -95102546 + AluSq SINE Alu 1 313 0 504 221 27 40 chr13 6770940 6771089 -95102080 + MLT1H LTR MaLR 22 168 -381 2262 103 3 0 chr13 6771176 6771476 -95101693 + AluSx SINE Alu 12 312 0 262 184 447 0 chr13 6771527 6771630 -95101539 + HAL1 LINE L1 1290 1438 -1069 792 246 111 47 chr13 6771650 6771663 -95101506 + HAL1 LINE L1 2075 2086 -421 1594 184 16 44 chr13 6771663 6771785 -95101384 + AluJb SINE Alu 1 125 -187 2559 63 0 0 chr13 6771785 6772084 -95101085 - AluY SINE Alu -12 299 1 1594 184 16 44 chr13 6772084 6772281 -95100888 + AluJb SINE Alu 125 311 -1 792 246 111 47 chr13 6772281 6772674 -95100495 + HAL1 LINE L1 2086 2507 0 294 29 0 0 chr13 6773208 6773243 -95099926 + (CA)n Simple_repeat Simple_repeat 2 36 0 397 286 37 37 chr13 6773246 6773407 -95099762 + L1ME4a LINE L1 5941 6101 -20 1394 202 80 3 chr13 6774355 6774642 -95098527 - AluJb SINE Alu -3 309 1 341 252 310 7 chr13 6775038 6775193 -95097976 + L1MCc LINE L1 13 214 -6209 2357 255 108 65 chr13 6775206 6776384 -95096785 + L1MCc LINE L1 303 1531 -4892 1759 259 86 25 chr13 6776400 6777189 -95095980 + L1MCc LINE L1 1751 2587 -4535 9935 101 15 0 chr13 6777191 6779457 -95093712 + L1PA10 LINE L1 3859 6158 -10 316 128 88 49 chr13 6779575 6779677 -95093492 + L1MCc LINE L1 2685 2790 -4332 411 206 57 4 chr13 6779677 6779823 -95093346 + MER3 DNA MER1_type 1 203 -6 1963 151 14 0 chr13 6779864 6780156 -95093013 - AluJb SINE Alu -16 296 1 2156 120 10 16 chr13 6780188 6780496 -95092673 + AluSx SINE Alu 1 306 -6 709 229 47 17 chr13 6780497 6780733 -95092436 + L1MCc LINE L1 2825 3067 -4055 894 206 0 0 chr13 6781115 6781275 -95091894 - FRAM SINE Alu -5 161 2 2355 106 3 0 chr13 6782076 6782379 -95090790 - AluSq SINE Alu -9 304 1 601 177 77 23 chr13 6783154 6783284 -95089885 - FLAM_C SINE Alu -5 138 2 459 273 62 24 chr13 6785507 6785716 -95087453 - MIR SINE MIR -38 224 8 266 210 0 32 chr13 6785719 6785781 -95087388 + tRNA-Gln-CAG tRNA tRNA 5 64 -11 249 322 74 0 chr13 6785798 6785919 -95087250 + MIR SINE MIR 110 239 -23 186 231 93 46 chr13 6786312 6786420 -95086749 + L2 LINE L2 1429 1541 -1773 1549 132 30 117 chr13 6786567 6786900 -95086269 - AluJb SINE Alu -8 304 1 196 241 0 0 chr13 6786991 6787045 -95086124 + MIR SINE MIR 204 257 -5 823 278 304 5 chr13 6787198 6788001 -95085168 + L2 LINE L2 1587 2629 -685 746 264 104 13 chr13 6788073 6788391 -95084778 + LTR16A LTR ERVL 104 450 0 1093 271 59 23 chr13 6788415 6789036 -95084133 + L2 LINE L2 2668 3308 -5 1798 176 0 7 chr13 6789467 6789762 -95083407 - AluJb SINE Alu -19 293 1 762 159 0 23 chr13 6789808 6789940 -95083229 - FLAM_A SINE Alu 0 142 14 194 313 150 7 chr13 6790547 6790694 -95082475 - MIR SINE MIR -74 188 21 1500 172 84 4 chr13 6790873 6791146 -95082023 + AluJo SINE Alu 1 295 -17 1933 156 10 3 chr13 6792114 6792409 -95080760 - AluJo SINE Alu -15 297 1 2413 82 117 107 chr13 6793104 6793855 -95079314 + pTR5 LTR ERV1 13 2435 -3 13629 107 17 79 chr13 6793855 6795086 -95078083 + Tigger1 DNA MER2_type 232 1538 -880 2440 94 3 0 chr13 6795086 6795394 -95077775 + AluSq SINE Alu 1 309 -4 13629 107 17 79 chr13 6795394 6795412 -95077757 + Tigger1 DNA MER2_type 1538 1556 -862 543 194 56 76 chr13 6795412 6795556 -95077613 + FRAM SINE Alu 20 160 -16 13629 107 17 79 chr13 6795556 6796494 -95076675 + Tigger1 DNA MER2_type 1556 2418 0 386 315 40 0 chr13 6796534 6796683 -95076486 - L1ME3A LINE L1 -310 5860 5706 1477 198 3 43 chr13 6796684 6796880 -95076289 - AluJo SINE Alu -2 310 131 2842 20 0 0 chr13 6796880 6797185 -95075984 + AluYb8 SINE Alu 1 305 -13 1477 198 3 43 chr13 6797185 6797311 -95075858 - AluJo SINE Alu -181 131 1 2127 125 0 3 chr13 6797313 6797602 -95075567 - AluSx SINE Alu -24 288 1 328 245 8 12 chr13 6797610 6797728 -95075441 - L1ME3A LINE L1 -803 5343 5245 240 284 25 12 chr13 6797728 6797809 -95075360 + MIR SINE MIR 48 129 -133 1708 155 4 25 chr13 6797869 6798147 -95075022 - AluJo SINE Alu -39 273 2 230 257 64 36 chr13 6798706 6798846 -95074323 - L1ME3A LINE L1 -1081 5065 4922 291 258 120 60 chr13 6798951 6799118 -95074051 - L1ME3A LINE L1 -1421 4725 4549 22 56 0 19 chr13 6799509 6799541 -95073628 + AT_rich Low_complexity Low_complexity 1 33 -20 742 186 0 0 chr13 6799541 6799659 -95073510 - FLAM_C SINE Alu -15 118 1 22 56 0 19 chr13 6799659 6799680 -95073489 + AT_rich Low_complexity Low_complexity 33 53 0 278 297 38 38 chr13 6800040 6800279 -95072890 + L1ME4a LINE L1 5714 5952 -169 2055 115 0 33 chr13 6800345 6800649 -95072520 + AluSx SINE Alu 1 294 -18 2310 92 7 0 chr13 6800655 6800950 -95072219 + AluSc SINE Alu 1 297 -12 206 186 0 0 chr13 6800996 6801039 -95072130 - L2 LINE L2 -248 3065 3023 476 279 114 0 chr13 6801352 6801492 -95071677 - MER63 DNA MER1_type -276 786 5 434 148 70 120 chr13 6801535 6801677 -95071492 + L1ME4a LINE L1 5985 6119 -2 2161 122 0 0 chr13 6802042 6802329 -95070840 - AluSx SINE Alu -25 287 1 3183 177 71 38 chr13 6802335 6803003 -95070166 - L1MB5 LINE L1 0 6174 5480 2399 78 3 3 chr13 6803003 6803311 -95069858 + AluY SINE Alu 1 308 -3 3183 177 71 38 chr13 6803311 6803350 -95069819 - L1MB5 LINE L1 -694 5480 5444 451 216 85 65 chr13 6803500 6803653 -95069516 + MER63A DNA MER1_type 53 208 -2 21 0 0 0 chr13 6804086 6804107 -95069062 + AT_rich Low_complexity Low_complexity 1 21 0 688 185 23 0 chr13 6804616 6804746 -95068423 - FRAM SINE Alu -8 168 36 2217 112 10 3 chr13 6804798 6805094 -95068075 - AluSq SINE Alu -15 298 1 444 300 206 26 chr13 6805400 6805827 -95067342 + MLT1L LTR MaLR 106 609 -6 1690 174 14 3 chr13 6807874 6808168 -95065001 - AluJo SINE Alu -15 297 1 2028 135 22 19 chr13 6808535 6808846 -95064323 - AluSx SINE Alu 0 312 1 2372 99 0 0 chr13 6810418 6810720 -95062449 + AluSg SINE Alu 1 302 -8 192 271 115 42 chr13 6811004 6811100 -95062069 + L2 LINE L2 3150 3252 -20 1889 176 32 26 chr13 6811308 6811688 -95061481 + MLT1B LTR MaLR 1 382 -8 432 168 74 60 chr13 6811976 6812125 -95061044 - L1ME4a LINE L1 -9 6112 5962 612 170 10 0 chr13 6812282 6812382 -95060787 - FLAM_A SINE Alu -22 120 20 791 132 47 23 chr13 6812694 6812823 -95060346 + AluJo SINE Alu 3 134 -178 181 278 56 0 chr13 6813406 6813460 -95059709 + MIR3 SINE MIR 100 156 -52 21 36 0 0 chr13 6813714 6813742 -95059427 + AT_rich Low_complexity Low_complexity 1 28 0 334 294 109 0 chr13 6815740 6815859 -95057310 - L1ME LINE L1 -379 5742 5611 628 188 103 0 chr13 6815888 6816005 -95057164 - FLAM_C SINE Alu -11 132 4 29 0 0 0 chr13 6816006 6816035 -95057134 + AT_rich Low_complexity Low_complexity 1 29 0 256 266 0 0 chr13 6816728 6816792 -95056377 + MIR3 SINE MIR 138 201 -7 1996 106 84 3 chr13 6817980 6818264 -95054905 - AluSg SINE Alu -3 307 1 1976 141 7 3 chr13 6818379 6818669 -95054500 - AluSx SINE Alu -20 292 2 596 133 95 0 chr13 6818679 6818784 -95054385 - AluSg/x SINE Alu -12 297 183 2556 115 4 117 chr13 6818789 6819294 -95053875 - LTR46 LTR ERV1 -11 449 2 977 87 0 8 chr13 6819295 6819422 -95053747 - AluSg/x SINE Alu -103 209 84 3961 126 153 93 chr13 6819718 6821016 -95052153 - pTR5 LTR ERV1 0 2438 738 740 235 161 29 chr13 6822042 6822198 -95050971 - L1ME4a LINE L1 -16 6105 5971 2114 120 7 0 chr13 6822198 6822489 -95050680 - AluSq SINE Alu -20 293 1 740 235 161 29 chr13 6822489 6822778 -95050391 - L1ME4a LINE L1 -150 5971 5601 403 190 21 92 chr13 6822828 6822900 -95050269 + L1MB8 LINE L1 6044 6103 -75 1944 166 10 0 chr13 6822900 6823202 -95049967 + AluJb SINE Alu 1 305 -7 403 190 21 92 chr13 6823202 6823271 -95049898 + L1MB8 LINE L1 6103 6175 -3 446 239 89 111 chr13 6823331 6823375 -95049794 - L1ME4a LINE L1 -81 6040 5997 2250 100 10 3 chr13 6823375 6823675 -95049494 - AluSx SINE Alu -10 302 1 446 239 89 111 chr13 6823675 6823948 -95049221 - L1ME4a LINE L1 -124 5997 5734 2752 20 0 0 chr13 6823948 6824247 -95048922 + AluYa5 SINE Alu 1 299 -12 446 239 89 111 chr13 6824247 6824389 -95048780 - L1ME4a LINE L1 -387 5734 5590 340 67 0 100 chr13 6824403 6824463 -95048706 - L1MB3 LINE L1 -52 6131 6078 1582 156 45 24 chr13 6824474 6824763 -95048406 - AluJb SINE Alu -17 295 1 968 211 12 40 chr13 6827125 6827447 -95045722 + L1M4 LINE L1 972 1284 -5258 * 5151 145 8 4 chr13 6827421 6828240 -95044929 + L1PA16 LINE L1 5833 6655 -9 2246 188 39 79 chr13 6828250 6828357 -95044812 + L1M4 LINE L1 1255 1365 -5281 1910 157 26 7 chr13 6828357 6828663 -95044506 + AluJo SINE Alu 1 312 0 2246 188 39 79 chr13 6828663 6829240 -95043929 + L1M4 LINE L1 1365 1912 -4734 1879 164 7 0 chr13 6829242 6829529 -95043640 + AluJb SINE Alu 1 289 -23 893 168 62 19 chr13 6830091 6830252 -95042917 - AluJo/FRAM SINE Alu -11 301 134 432 234 52 0 chr13 6830255 6830332 -95042837 - AluJ/FLAM SINE Alu -230 82 2 1740 132 4 0 chr13 6830398 6830640 -95042529 + AluSx SINE Alu 1 243 -69 1980 121 7 4 chr13 6830949 6831271 -95041898 + AluSx SINE Alu 1 323 0 714 198 8 0 chr13 6831815 6831936 -95041233 - FLAM_A SINE Alu -7 126 5 354 23 0 0 chr13 6831961 6832004 -95041165 + (TG)n Simple_repeat Simple_repeat 2 44 0 1927 152 3 7 chr13 6832014 6832317 -95040852 - AluSx SINE Alu -10 302 1 599 162 0 81 chr13 6832423 6832559 -95040610 - L1PA10 LINE L1 0 6168 6044 1526 163 22 18 chr13 6832562 6832839 -95040330 - LTR14B LTR ERVK -23 585 308 289 262 50 41 chr13 6835980 6836234 -95036935 + ALR/Alpha Satellite centromeric 1 256 0 2546 68 0 0 chr13 6836435 6836745 -95036424 + AluY SINE Alu 1 310 -1 28 0 0 47 chr13 6838725 6838752 -95034417 + AT_rich Low_complexity Low_complexity 1 27 -14 2242 100 0 3 chr13 6838752 6839041 -95034128 - AluY SINE Alu -23 288 1 28 0 0 47 chr13 6839041 6839056 -95034113 + AT_rich Low_complexity Low_complexity 27 41 0 2697 17 0 0 chr13 6841863 6842156 -95031013 - AluYa5 SINE Alu -18 293 1 3105 180 50 41 chr13 6842158 6842864 -95030305 + LTR8A LTR ERV1 16 727 0 486 308 35 0 chr13 6843730 6843902 -95029267 + L1PA16 LINE L1 2467 2644 -3502 * 941 165 88 0 chr13 6843901 6844083 -95029086 - L1PA15-16 LINE L1 -3932 2917 2720 10680 205 24 8 chr13 6844084 6847533 -95025636 + L1PA16 LINE L1 2658 6165 -1 258 32 0 0 chr13 6847570 6847601 -95025568 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 1575 259 25 0 chr13 6847623 6848029 -95025140 - L1M4 LINE L1 -940 5206 4791 257 132 0 38 chr13 6848613 6848666 -95024503 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 360 0 0 0 chr13 6848729 6848769 -95024400 + (TG)n Simple_repeat Simple_repeat 1 40 0 408 248 31 47 chr13 6849214 6849343 -95023826 + MLT1D LTR MaLR 343 469 -36 21 0 0 0 chr13 6849758 6849779 -95023390 + AT_rich Low_complexity Low_complexity 1 21 0 258 227 108 70 chr13 6849893 6850179 -95022990 - L1M4 LINE L1 -2866 3280 2984 1372 209 100 6 chr13 6850235 6850555 -95022614 + MLT1D LTR MaLR 156 505 0 218 207 244 0 chr13 6851246 6851328 -95021841 - MIR SINE MIR -71 137 36 396 0 0 0 chr13 6852272 6852316 -95020853 + (TG)n Simple_repeat Simple_repeat 2 45 0 253 290 139 23 chr13 6852948 6853096 -95020073 + MIR SINE MIR 5 142 -66 188 175 25 0 chr13 6853941 6853981 -95019188 + MIR SINE MIR 105 145 -63 1066 96 12 0 chr13 6856334 6856500 -95016669 + (TTTC)n Simple_repeat Simple_repeat 3 170 0 3481 66 26 18 chr13 6856500 6856956 -95016213 - L1PA7 LINE L1 -13 6141 5682 227 351 115 20 chr13 6857665 6858013 -95015156 + L1ME LINE L1 5504 5884 -237 26 0 0 0 chr13 6858417 6858443 -95014726 + AT_rich Low_complexity Low_complexity 1 26 0 603 234 28 0 chr13 6858821 6858966 -95014203 - L1PA16 LINE L1 0 6166 6018 4133 154 16 25 chr13 6859198 6859390 -95013779 - L1MA3 LINE L1 0 6305 6113 189 0 0 0 chr13 6859390 6859411 -95013758 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2326 59 0 3 chr13 6859411 6859697 -95013472 - AluY SINE Alu -26 285 1 4133 154 16 25 chr13 6859697 6860267 -95012902 - L1MA3 LINE L1 -190 6115 5549 198 0 0 0 chr13 6861203 6861225 -95011944 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 767 188 0 0 chr13 6861989 6862106 -95011063 + FLAM_A SINE Alu 1 117 -16 43801 47 7 2 chr13 6862107 6867702 -95005467 - L1PA4 LINE L1 0 6155 590 180 0 0 0 chr13 6867702 6867722 -95005447 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 43801 47 7 2 chr13 6867722 6868241 -95004928 - L1PA4 LINE L1 -5565 590 8 8956 51 5 0 chr13 6868241 6869243 -95003926 - LTR13 LTR ERVK 0 1007 1 382 348 18 0 chr13 6870877 6870989 -95002180 - L2 LINE L2 -259 3054 2941 195 167 48 24 chr13 6872762 6872804 -95000365 + MER5A DNA MER1_type 43 85 -104 * 361 211 156 0 chr13 6872788 6872878 -95000291 - MER5A DNA MER1_type -77 112 9 5186 109 142 131 chr13 6873409 6874955 -94998214 - pTR5 LTR ERV1 0 2438 741 297 0 0 0 chr13 6876619 6876652 -94996517 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 188 21 0 chr13 6877151 6877247 -94995922 - Charlie1 DNA MER1_type -45 2716 2619 986 201 25 0 chr13 6878713 6878917 -94994252 + AluJb SINE Alu 97 305 -7 1125 94 0 0 chr13 6879254 6879392 -94993777 + AluSq/x SINE Alu 1 138 -175 266 187 0 10 chr13 6879420 6879479 -94993690 - Alu SINE Alu -13 289 248 1620 184 24 3 chr13 6880943 6881237 -94991932 - AluJb SINE Alu -12 300 1 23 0 0 0 chr13 6881674 6881697 -94991472 + AT_rich Low_complexity Low_complexity 1 23 0 2075 65 11 8 chr13 6884801 6885061 -94988108 - AluSg1 SINE Alu -14 295 35 22 0 0 0 chr13 6885071 6885093 -94988076 + AT_rich Low_complexity Low_complexity 1 22 0 1094 88 0 0 chr13 6885093 6885240 -94987929 - AluY SINE Alu -8 303 157 588 306 95 6 chr13 6885277 6885636 -94987533 + L1M4 LINE L1 4549 4939 -1207 453 221 0 23 chr13 6885636 6885722 -94987447 + MER21B LTR ERV1 1 84 -779 207 0 0 0 chr13 6885914 6885937 -94987232 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2054 111 0 10 chr13 6885937 6886226 -94986943 - AluSx SINE Alu -26 286 1 948 185 83 0 chr13 6886454 6886659 -94986510 - MER99 DNA DNA -271 557 336 2159 103 0 30 chr13 6886660 6886961 -94986208 - AluSq SINE Alu -21 292 1 1116 130 36 36 chr13 6887276 6887468 -94985701 - AluJb SINE Alu -120 192 1 401 185 193 8 chr13 6887468 6887587 -94985582 - L1MB8 LINE L1 -269 5909 5769 5353 118 48 62 chr13 6887598 6888085 -94985084 - L1MA4A LINE L1 -1 6302 5810 180 0 0 0 chr13 6888085 6888105 -94985064 + (TA)n Simple_repeat Simple_repeat 2 21 0 5353 118 48 62 chr13 6888105 6888155 -94985014 - L1MA4A LINE L1 -493 5810 5761 2247 100 0 31 chr13 6888155 6888474 -94984695 - AluSg1 SINE Alu 0 309 1 5353 118 48 62 chr13 6888474 6888926 -94984243 - L1MA4A LINE L1 -542 5761 5304 230 56 28 0 chr13 6888926 6888962 -94984207 + (TATG)n Simple_repeat Simple_repeat 4 40 0 2043 119 11 3 chr13 6888962 6889247 -94983922 - AluSq SINE Alu -26 287 1 5387 146 36 4 chr13 6889247 6890338 -94982831 - L1 LINE L1 -3764 3084 1956 2041 151 3 0 chr13 6890338 6890642 -94982527 - AluSx SINE Alu -7 305 1 5387 146 36 4 chr13 6890642 6890667 -94982502 - L1 LINE L1 -4892 1956 1933 5902 107 20 31 chr13 6890911 6891827 -94981342 - L1PA15 LINE L1 -6 6159 5254 1382 115 0 21 chr13 6891839 6892031 -94981138 - AluSg SINE Alu -94 216 29 10271 150 22 17 chr13 6892031 6892506 -94980663 - L1PA15-16 LINE L1 -3489 3360 2889 561 30 0 0 chr13 6892506 6892573 -94980596 + (TTTC)n Simple_repeat Simple_repeat 3 69 0 1867 157 4 0 chr13 6892573 6892847 -94980322 - AluSc SINE Alu -34 275 1 10271 150 22 17 chr13 6892847 6894415 -94978754 - L1PA15-16 LINE L1 -3959 2890 1305 2519 157 15 0 chr13 6894421 6894823 -94978346 - L1PA15-16 LINE L1 -6437 412 5 238 291 118 52 chr13 6894821 6895151 -94978018 - L1M4 LINE L1 -2316 3830 3479 * 654 156 0 0 chr13 6895162 6895258 -94977911 + AluSg/x SINE Alu 201 296 -13 622 194 119 12 chr13 6895605 6895765 -94977404 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 6896290 6896413 -94976756 - MER112 DNA MER1_type 0 260 139 530 245 24 53 chr13 6896497 6896709 -94976460 + MIR3 SINE MIR 13 208 0 1950 125 0 11 chr13 6896768 6897047 -94976122 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 6897054 6897077 -94976092 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 369 0 0 0 chr13 6897701 6897742 -94975427 + (TG)n Simple_repeat Simple_repeat 2 42 0 222 282 103 0 chr13 6897817 6897895 -94975274 - MIR SINE MIR -29 233 148 807 206 52 134 chr13 6897925 6898479 -94974690 - L1MC5 LINE L1 -48 7913 7405 424 221 107 25 chr13 6898479 6898601 -94974568 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 6898879 6898903 -94974266 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr13 6899947 6899972 -94973197 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2012 123 0 0 chr13 6899975 6900252 -94972917 - AluSx SINE Alu -25 287 11 204 362 79 0 chr13 6902013 6902140 -94971029 + L3b LINE CR1 1125 1261 -322 2096 134 26 10 chr13 6902341 6902648 -94970521 - AluSx SINE Alu 0 312 1 621 310 16 5 chr13 6903393 6903580 -94969589 - MER5A DNA MER1_type 0 189 1 258 243 153 9 chr13 6904340 6904451 -94968718 + MIR SINE MIR 81 207 -55 707 163 16 16 chr13 6904772 6904895 -94968274 - AluJ SINE Alu 0 312 190 273 140 0 0 chr13 6904899 6904949 -94968220 - AluJ SINE Alu -169 133 84 869 201 106 15 chr13 6904949 6905054 -94968115 - AluSp SINE Alu -95 218 124 1517 114 5 9 chr13 6905054 6905273 -94967896 - AluSc SINE Alu -5 304 87 5666 123 54 21 chr13 6905275 6906213 -94966956 + LTR5 LTR ERVK 1 969 0 869 201 106 15 chr13 6906213 6906303 -94966866 - AluSp SINE Alu -189 124 2 2325 107 0 0 chr13 6907088 6907387 -94965782 + AluSc SINE Alu 1 299 -10 1572 190 17 3 chr13 6907439 6907728 -94965441 + AluSx SINE Alu 1 293 -19 353 45 0 0 chr13 6907745 6907789 -94965380 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 231 39 13 chr13 6908279 6908357 -94964812 + A-rich Low_complexity Low_complexity 4 83 0 946 107 0 0 chr13 6908427 6908548 -94964621 - FRAM SINE Alu -28 148 28 3106 181 51 7 chr13 6908548 6909140 -94964029 + MER54A LTR ERVL 284 901 0 907 58 117 0 chr13 6910597 6910717 -94962452 - MER85 DNA T2_type -2 137 4 208 206 32 0 chr13 6911293 6911356 -94961813 + (TA)n Simple_repeat Simple_repeat 1 65 0 1683 193 3 10 chr13 6912085 6912396 -94960773 - AluJb SINE Alu -3 309 1 14267 230 40 30 chr13 6913546 6914581 -94958588 - L1PA16 LINE L1 -9 7595 6572 2444 68 3 0 chr13 6914581 6914877 -94958292 + AluY SINE Alu 3 299 -12 14267 230 40 30 chr13 6914877 6916358 -94956811 - L1PA16 LINE L1 -1032 6572 5107 2223 105 0 20 chr13 6916358 6916664 -94956505 - AluY SINE Alu -11 300 1 14267 230 40 30 chr13 6916664 6917896 -94955273 - L1PA16 LINE L1 -2497 5107 3889 2233 97 0 3 chr13 6917896 6918184 -94954985 + AluY SINE Alu 3 289 -22 14267 230 40 30 chr13 6918184 6921360 -94951809 - L1PA16 LINE L1 -3715 3889 8 2232 94 0 16 chr13 6921536 6921844 -94951325 + AluY SINE Alu 3 305 -6 718 137 0 10 chr13 6922031 6922133 -94951036 - AluS SINE Alu -211 102 2 2431 94 0 0 chr13 6922293 6922601 -94950568 - AluSg SINE Alu -2 308 1 378 221 0 0 chr13 6925128 6925223 -94947946 + (TGGA)n Simple_repeat Simple_repeat 4 98 0 494 308 43 84 chr13 6925236 6925606 -94947563 + L2 LINE L2 2917 3271 -1 180 0 0 0 chr13 6929383 6929403 -94943766 + (A)n Simple_repeat Simple_repeat 1 20 0 195 180 213 0 chr13 6930179 6930240 -94942929 - MER5A DNA MER1_type -106 83 10 256 289 55 47 chr13 6930359 6930487 -94942682 - L2 LINE L2 -941 2373 2245 2169 110 0 0 chr13 6930656 6930946 -94942223 + AluSx SINE Alu 21 310 -2 295 311 57 0 chr13 6932193 6932318 -94940851 + MIR SINE MIR 20 150 -63 206 116 47 23 chr13 6933074 6933095 -94940074 + (TTCTG)n Simple_repeat Simple_repeat 2 21 -24 1416 172 15 78 chr13 6933095 6933427 -94939742 - AluJo SINE Alu -1 311 1 206 116 47 23 chr13 6933427 6933448 -94939721 + (TTCTG)n Simple_repeat Simple_repeat 21 45 0 1387 96 0 5 chr13 6933735 6933923 -94939246 - AluY SINE Alu -124 187 1 2239 148 5 8 chr13 6933923 6934301 -94938868 - L1MA4 LINE L1 -246 6054 5678 620 184 15 22 chr13 6934354 6934490 -94938679 + Ricksha DNA DNA 1 135 -1119 2207 177 33 5 chr13 6934542 6934909 -94938260 + Ricksha DNA DNA 308 684 -2562 259 258 103 21 chr13 6934836 6934933 -94938236 + MLT2D LTR ERVL 321 425 -128 * 2096 138 41 141 chr13 6934932 6935194 -94937975 + Ricksha DNA DNA 2641 2928 -323 2032 113 10 3 chr13 6935194 6935495 -94937674 - AluSq SINE Alu -10 303 1 2096 138 41 141 chr13 6935495 6935578 -94937591 + Ricksha DNA DNA 2928 3018 -233 2315 66 0 3 chr13 6935578 6935880 -94937289 - AluY SINE Alu -10 301 1 2096 138 41 141 chr13 6935880 6936071 -94937098 + Ricksha DNA DNA 3018 3124 -127 4153 128 105 54 chr13 6936101 6936883 -94936286 - LTR12 LTR ERV1 0 826 5 1609 208 16 43 chr13 6936916 6937354 -94935815 + pTR5 LTR ERV1 802 1227 -1211 4797 111 25 98 chr13 6937382 6938269 -94934900 + LTR12 LTR ERV1 5 826 0 384 220 189 8 chr13 6938937 6939069 -94934100 + L2 LINE L2 3115 3270 -43 1453 148 38 6 chr13 6939074 6939510 -94933659 + LTR54 LTR ERV1 1 510 0 243 173 0 0 chr13 6939541 6939593 -94933576 + GA-rich Low_complexity Low_complexity 2 53 0 407 320 47 6 chr13 6939697 6939868 -94933301 + MIR SINE MIR 16 193 -63 360 353 59 13 chr13 6940508 6940746 -94932423 + MIR SINE MIR 6 254 -8 476 251 134 27 chr13 6941849 6942072 -94931097 + MLT1J1 LTR MaLR 189 435 -11 1338 188 112 65 chr13 6942198 6942628 -94930541 + LTR7 LTR ERV1 1 450 0 2252 99 0 3 chr13 6942753 6943067 -94930102 - AluSq SINE Alu 0 313 1 293 283 41 69 chr13 6943873 6944018 -94929151 - MIR3 SINE MIR -28 180 40 237 266 31 16 chr13 6944123 6944187 -94928982 + MIR SINE MIR 89 153 -109 3937 113 4 11 chr13 6944821 6945148 -94928021 + MER41A LTR ERV1 1 324 -230 2182 107 0 0 chr13 6945148 6945446 -94927723 + AluSg SINE Alu 1 298 -12 3937 113 4 11 chr13 6945446 6945676 -94927493 + MER41A LTR ERV1 324 554 0 548 254 55 55 chr13 6945755 6945956 -94927213 + MIR SINE MIR 48 248 -14 297 252 179 0 chr13 6946119 6946242 -94926927 - MIR SINE MIR -71 191 47 685 272 44 44 chr13 6946420 6946670 -94926499 - MIR SINE MIR -12 250 1 420 227 144 57 chr13 6946908 6947102 -94926067 + L1MEd LINE L1 3 213 -5906 243 265 108 12 chr13 6947273 6947356 -94925813 + L1MEd LINE L1 464 554 -5565 801 183 0 21 chr13 6947358 6947500 -94925669 - FLAM_C SINE Alu -3 140 2 366 266 9 0 chr13 6947589 6947698 -94925471 + L1MEd LINE L1 671 780 -5339 336 265 204 6 chr13 6947732 6947894 -94925275 + L1MEd LINE L1 1064 1257 -4862 2313 71 0 37 chr13 6947913 6948236 -94924933 - AluY SINE Alu 0 311 1 1892 135 30 0 chr13 6948401 6948697 -94924472 + AluSq SINE Alu 9 313 0 780 149 0 0 chr13 6948728 6948849 -94924320 + FLAM_C SINE Alu 10 130 -13 1778 173 0 3 chr13 6949530 6949836 -94923333 - AluJb SINE Alu -7 305 1 805 127 16 0 chr13 6949935 6950061 -94923108 - FLAM_C SINE Alu -4 139 12 2072 34 52 4 chr13 6951004 6951317 -94921852 + AluY SINE Alu 1 326 0 1532 98 9 0 chr13 6952307 6952521 -94920648 - MER4E LTR ERV1 0 766 551 313 44 0 22 chr13 6952516 6952561 -94920608 - MER4E LTR ERV1 -735 44 1 * 1548 191 65 9 chr13 6953145 6953470 -94919699 - MER61A LTR ERV1 0 343 1 2443 61 3 13 chr13 6953560 6953873 -94919296 + AluY SINE Alu 1 310 -1 1900 108 14 21 chr13 6954001 6954287 -94918882 - MER61A-int LTR ERV1 -108 6650 6367 8673 126 55 38 chr13 6954387 6954566 -94918603 - MER61A-int LTR ERV1 -761 5997 5823 2088 122 3 0 chr13 6954566 6954862 -94918307 + AluSx SINE Alu 1 297 -15 8673 126 55 38 chr13 6954862 6956201 -94916968 - MER61A-int LTR ERV1 -935 5823 4452 3639 128 44 9 chr13 6956203 6956766 -94916403 - MER61A-int LTR ERV1 -2673 4085 3503 4133 117 73 22 chr13 6956803 6957608 -94915561 - MER61A-int LTR ERV1 -3666 3092 2247 3920 95 4 2 chr13 6957608 6958126 -94915043 + MER41A LTR ERV1 1 519 -35 1585 146 0 24 chr13 6958126 6958380 -94914789 - AluJb SINE Alu -58 254 7 403 224 0 12 chr13 6958387 6958472 -94914697 - L1ME2 LINE L1 -62 6102 6019 565 158 20 20 chr13 6958580 6958732 -94914437 - L1M4 LINE L1 -3183 2963 2812 309 275 180 35 chr13 6958836 6959203 -94913966 - L1M4 LINE L1 -2002 4144 3725 1764 131 6 70 chr13 6959354 6959667 -94913502 - AluJb SINE Alu -18 294 2 6929 65 33 0 chr13 6959711 6960579 -94912590 + MER11D LTR ERVK 1 897 0 509 309 16 3 chr13 6961154 6961346 -94911823 - L1MC4a LINE L1 -332 5910 5713 243 0 0 0 chr13 6961892 6961919 -94911250 + (ATG)n Simple_repeat Simple_repeat 1 27 0 2119 98 16 10 chr13 6962148 6962453 -94910716 + AluSx SINE Alu 1 307 -5 234 210 12 25 chr13 6963263 6963344 -94909825 + CT-rich Low_complexity Low_complexity 1 80 0 294 208 73 10 chr13 6963609 6963705 -94909464 - L1ME4a LINE L1 0 6121 6020 524 265 57 29 chr13 6963778 6964023 -94909146 + MLT1J1 LTR MaLR 45 296 -150 2070 124 3 13 chr13 6964097 6964411 -94908758 + AluSx SINE Alu 1 311 -1 800 163 0 0 chr13 6966649 6966772 -94906397 - FLAM_C SINE Alu -8 125 3 1324 168 71 4 chr13 6967484 6967752 -94905417 + AluJo SINE Alu 19 304 -8 625 281 46 12 chr13 6967775 6968103 -94905066 + L1M4 LINE L1 2211 2549 -3597 2495 203 22 42 chr13 6968191 6968782 -94904387 + MER119 DNA MER1_type 5 583 0 641 119 8 42 chr13 6968831 6968949 -94904220 + FLAM_C SINE Alu 30 143 0 1045 139 11 37 chr13 6968963 6969150 -94904019 + AluJb SINE Alu 127 308 -4 400 243 64 125 chr13 6969155 6969207 -94903962 + L1M4 LINE L1 2678 2732 -3414 2320 63 37 0 chr13 6969207 6969507 -94903662 + AluY SINE Alu 1 311 0 400 243 64 125 chr13 6969507 6969750 -94903419 + L1M4 LINE L1 2732 2955 -3191 2217 141 60 0 chr13 6969752 6970134 -94903035 - L1PA16 LINE L1 0 6166 5762 314 109 0 0 chr13 6970144 6970190 -94902979 + L1P4 LINE L1 5755 5800 -366 423 245 78 91 chr13 6970201 6970470 -94902699 + L1M4 LINE L1 2945 3205 -2941 1890 155 0 0 chr13 6970470 6970780 -94902389 + AluSx SINE Alu 1 310 -2 423 245 78 91 chr13 6970780 6971024 -94902145 + L1M4 LINE L1 3205 3451 -2695 3508 179 42 23 chr13 6971074 6971810 -94901359 + L1MC3 LINE L1 7015 7764 -21 23 54 0 0 chr13 6971917 6971954 -94901215 + AT_rich Low_complexity Low_complexity 1 37 0 1833 152 0 3 chr13 6971964 6972261 -94900908 + AluJb SINE Alu 1 296 -16 2178 78 0 3 chr13 6972263 6972611 -94900558 + AluY SINE Alu 1 347 0 724 285 81 4 chr13 6972611 6972871 -94900298 + L1M4 LINE L1 3950 4229 -1917 22 35 0 0 chr13 6973745 6973774 -94899395 + AT_rich Low_complexity Low_complexity 1 29 0 2862 152 30 4 chr13 6974090 6974591 -94898578 - L1MA4 LINE L1 -11 6289 5776 308 234 16 0 chr13 6974622 6974686 -94898483 - L1MC4 LINE L1 -1339 6703 6639 2517 30 0 7 chr13 6974689 6974991 -94898178 - AluY SINE Alu -11 300 1 3270 125 29 5 chr13 6974991 6975629 -94897540 - L1M2 LINE L1 -514 5786 5127 342 297 25 34 chr13 6976254 6976372 -94896797 + MIR SINE MIR 24 140 -68 1061 257 86 24 chr13 6976387 6976761 -94896408 - MLT2C1 LTR ERVL 0 397 1 401 327 47 45 chr13 6976911 6977336 -94895833 - L1ME4a LINE L1 -173 5948 5523 875 172 105 62 chr13 6977467 6977594 -94895575 + Tigger3(Golem) DNA MER2_type 1 142 -2887 2424 54 3 0 chr13 6977594 6977890 -94895279 + AluY SINE Alu 2 298 -13 875 172 105 62 chr13 6977890 6977971 -94895198 + Tigger3(Golem) DNA MER2_type 142 218 -2811 * 3747 135 66 2 chr13 6977946 6978086 -94895083 + Tigger3(Golem) DNA MER2_type 2354 2484 -545 575 242 0 8 chr13 6978086 6978210 -94894959 + FLAM_A SINE Alu 1 123 -10 3747 135 66 2 chr13 6978210 6978704 -94894465 + Tigger3(Golem) DNA MER2_type 2484 3029 0 1685 127 4 12 chr13 6978886 6979145 -94894024 - Tigger2 DNA MER2_type 0 2718 2462 4131 142 53 30 chr13 6979182 6979485 -94893684 - Tigger2 DNA MER2_type -1946 772 477 2373 51 3 0 chr13 6979485 6979777 -94893392 - AluY SINE Alu -18 293 1 4131 142 53 30 chr13 6979777 6980228 -94892941 - Tigger2 DNA MER2_type -2241 477 1 1651 180 81 33 chr13 6981423 6981818 -94891351 - MLT2D LTR ERVL 0 414 1 2325 107 0 0 chr13 6983019 6983317 -94889852 + AluSg SINE Alu 1 298 -12 286 324 142 7 chr13 6983898 6984046 -94889123 - MER5A DNA MER1_type -4 185 18 231 304 26 61 chr13 6984287 6984402 -94888767 + L3b LINE CR1 1327 1437 -146 252 228 0 0 chr13 6985359 6985416 -94887753 + MER53 DNA DNA 1 57 -132 662 141 141 0 chr13 6985416 6985537 -94887632 + FRAM SINE Alu 23 160 -16 294 206 0 14 chr13 6985538 6985611 -94887558 - MER53 DNA DNA -37 152 81 2301 94 3 16 chr13 6986966 6987274 -94885895 + AluSq SINE Alu 2 305 -8 2404 78 0 0 chr13 6988498 6988791 -94884378 - AluSc SINE Alu -14 295 3 866 238 17 74 chr13 6988960 6989259 -94883910 + L1MA9 LINE L1 5987 6268 -44 1604 148 72 14 chr13 6990955 6991232 -94881937 + AluJb SINE Alu 5 297 -15 200 193 70 35 chr13 6991642 6991699 -94881470 + L3 LINE CR1 1519 1577 0 2550 54 0 19 chr13 6992174 6992491 -94880678 - AluY SINE Alu 0 311 1 513 188 10 0 chr13 6993110 6993211 -94879958 - MLT1G LTR MaLR 0 590 489 873 57 63 10 chr13 6995296 6995634 -94877535 + (TG)n Simple_repeat Simple_repeat 1 537 0 702 58 64 23 chr13 6995661 6995833 -94877336 + (TG)n Simple_repeat Simple_repeat 2 180 0 183 263 153 58 chr13 6996136 6996273 -94876896 + MIR3 SINE MIR 24 173 -35 2430 81 0 3 chr13 6996376 6996674 -94876495 - AluSq SINE Alu -16 297 1 341 235 160 34 chr13 6996889 6997008 -94876161 - MER63 DNA MER1_type -302 760 1 208 273 64 27 chr13 6997098 6997208 -94875961 + MIR SINE MIR 120 233 -29 288 165 29 5 chr13 6998018 6998127 -94875042 + MER20 DNA MER1_type 55 219 0 2386 96 0 3 chr13 6999573 6999874 -94873295 + AluSp SINE Alu 1 300 -13 2518 65 3 0 chr13 6999875 7000210 -94872959 + AluY SINE Alu 1 336 0 2193 102 3 14 chr13 7000595 7000890 -94872279 + AluSx SINE Alu 1 292 -20 565 262 83 35 chr13 7001324 7001553 -94871616 + MIR SINE MIR 7 246 -16 634 314 31 14 chr13 7002270 7002563 -94870606 + L1MB7 LINE L1 5863 6160 -24 218 103 0 26 chr13 7006732 7006771 -94866398 + (TCCC)n Simple_repeat Simple_repeat 4 41 0 233 373 105 19 chr13 7006936 7007250 -94865919 + L2 LINE L2 2222 2562 -752 246 32 0 0 chr13 7008267 7008298 -94864871 + (CA)n Simple_repeat Simple_repeat 1 31 0 2282 110 3 7 chr13 7009005 7009313 -94863856 - AluSq SINE Alu -6 307 1 189 279 49 0 chr13 7009545 7009606 -94863563 - MIR SINE MIR -43 219 156 2966 3 0 19 chr13 7009829 7010151 -94863018 + AluYb8 SINE Alu 1 316 -2 926 213 30 53 chr13 7010461 7010724 -94862445 + MIR SINE MIR 5 261 -1 2117 137 0 19 chr13 7010756 7011063 -94862106 + AluJo SINE Alu 1 301 -11 180 254 0 34 chr13 7011372 7011431 -94861738 + MIR SINE MIR 206 262 0 246 160 40 0 chr13 7011446 7011496 -94861673 - L1ME LINE L1 -452 5669 5618 280 279 27 82 chr13 7013657 7013804 -94859365 + L2 LINE L2 2925 3063 -209 2449 95 0 9 chr13 7014620 7014936 -94858233 + AluSq SINE Alu 1 313 0 199 208 19 19 chr13 7015615 7015668 -94857501 - L2 LINE L2 0 3313 3261 349 282 70 14 chr13 7016062 7016204 -94856965 - L2 LINE L2 0 3313 3164 2090 112 7 0 chr13 7016639 7016943 -94856226 - AluSx SINE Alu 0 308 3 706 65 56 28 chr13 7016961 7017069 -94856100 - HY1 scRNA scRNA -1 111 1 1088 156 13 69 chr13 7017069 7017292 -94855877 - AluJo SINE Alu -16 296 85 519 126 58 0 chr13 7017296 7017383 -94855786 - FRAM SINE Alu -59 117 26 1922 135 20 24 chr13 7017404 7017700 -94855469 - AluSx SINE Alu -17 295 1 219 36 0 0 chr13 7018397 7018425 -94854744 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 211 318 15 0 chr13 7018782 7018848 -94854321 - L2 LINE L2 -527 2787 2721 2117 134 3 13 chr13 7019068 7019375 -94853794 - AluJb SINE Alu -8 304 1 295 313 0 0 chr13 7020949 7021029 -94852140 - MER5A DNA MER1_type -100 89 10 1716 141 111 4 chr13 7021088 7021350 -94851819 - AluSx SINE Alu -19 293 4 227 35 0 0 chr13 7021968 7021997 -94851172 + MER5A DNA MER1_type 41 69 -120 614 200 21 14 chr13 7022001 7022141 -94851028 + FLAM_A SINE Alu 2 142 0 1057 118 11 6 chr13 7022206 7022384 -94850785 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 409 218 11 0 chr13 7022386 7022473 -94850696 + MER5A DNA MER1_type 64 151 -38 451 269 69 40 chr13 7022494 7022669 -94850500 - MER97b DNA MER1_type? -859 194 15 856 158 0 0 chr13 7023525 7023652 -94849517 + FLAM_C SINE Alu 1 127 -16 309 282 77 46 chr13 7027157 7027352 -94845817 - L1ME4a LINE L1 -2 6119 5919 333 254 91 27 chr13 7027540 7027650 -94845519 - L1ME4a LINE L1 -474 5647 5531 2245 120 0 0 chr13 7027928 7028227 -94844942 - AluSx SINE Alu -13 299 1 918 129 0 0 chr13 7028451 7028575 -94844594 + FLAM_C SINE Alu 1 124 -19 227 337 36 0 chr13 7028584 7028667 -94844502 - L2 LINE L2 -561 2753 2668 2357 89 7 0 chr13 7029038 7029341 -94843828 + AluY SINE Alu 1 305 -6 181 353 173 0 chr13 7029350 7029489 -94843680 - MIR SINE MIR -3 259 97 861 232 150 15 chr13 7029550 7029890 -94843279 + LTR37A LTR ERV1 3 388 -38 180 125 0 0 chr13 7030324 7030356 -94842813 + (T)n Simple_repeat Simple_repeat 1 32 0 1869 136 48 42 chr13 7030429 7030739 -94842430 - AluJb SINE Alu 0 312 1 1518 187 63 20 chr13 7031312 7031659 -94841510 + L1PA16 LINE L1 5803 6164 -2 223 191 152 38 chr13 7032554 7032659 -94840510 + L2 LINE L2 3150 3266 -6 1738 174 3 3 chr13 7032755 7033059 -94840110 + AluJo SINE Alu 3 306 -6 201 74 0 0 chr13 7033061 7033088 -94840081 + (GGA)n Simple_repeat Simple_repeat 3 29 0 583 48 24 0 chr13 7033088 7033171 -94839998 + (GAAA)n Simple_repeat Simple_repeat 4 88 0 216 297 0 0 chr13 7033504 7033568 -94839601 + L2 LINE L2 1912 1975 -1339 181 191 149 0 chr13 7033640 7033687 -94839482 - L3 LINE CR1 -931 646 593 644 250 48 18 chr13 7033735 7033963 -94839206 - MER90 LTR ERV1 0 575 341 1132 153 222 106 chr13 7034350 7034514 -94838655 - LTR52 LTR ERVL -5 416 273 2219 76 0 10 chr13 7034514 7034804 -94838365 + AluY SINE Alu 1 287 -24 1132 153 222 106 chr13 7034804 7034999 -94838170 - LTR52 LTR ERVL -148 273 15 1861 155 0 7 chr13 7034999 7035302 -94837867 + AluSx SINE Alu 1 301 -11 467 211 0 11 chr13 7035451 7035541 -94837628 - MIR SINE MIR -22 240 152 1841 129 31 28 chr13 7035552 7035610 -94837559 - MER2 DNA MER2_type -25 320 264 1964 123 10 0 chr13 7035610 7035903 -94837266 + AluSx SINE Alu 1 296 -16 1841 129 31 28 chr13 7035903 7036162 -94837007 - MER2 DNA MER2_type -81 264 2 550 303 26 33 chr13 7036163 7036315 -94836854 - MIR SINE MIR -111 151 1 261 278 157 28 chr13 7036986 7037094 -94836075 - MIR3 SINE MIR -36 172 66 528 151 21 11 chr13 7037288 7037381 -94835788 - MIR SINE MIR -98 164 71 1260 150 58 23 chr13 7037516 7037776 -94835393 - LTR54 LTR ERV1 0 510 242 1778 144 7 3 chr13 7037792 7038091 -94835078 - AluSq SINE Alu -13 300 1 204 318 64 18 chr13 7038949 7039059 -94834110 - MER5A DNA MER1_type -67 122 8 658 157 0 0 chr13 7039363 7039478 -94833691 - FLAM_A SINE Alu 0 142 28 1718 113 16 12 chr13 7040012 7040269 -94832900 + AluSc SINE Alu 51 308 -1 251 276 61 31 chr13 7040686 7040784 -94832385 + MLT1G1 LTR MaLR 1 101 -494 2308 149 66 76 chr13 7041007 7041247 -94831922 + LTR54 LTR ERV1 1 242 -268 2215 93 3 3 chr13 7041247 7041548 -94831621 + AluSx SINE Alu 1 301 -11 2308 149 66 76 chr13 7041548 7041822 -94831347 + LTR54 LTR ERV1 242 510 0 528 151 21 11 chr13 7041957 7042050 -94831119 + MIR SINE MIR 71 164 -98 40 0 0 0 chr13 7042392 7042432 -94830737 + AT_rich Low_complexity Low_complexity 1 40 0 409 131 48 7 chr13 7042446 7042591 -94830578 + (TA)n Simple_repeat Simple_repeat 1 151 0 2431 51 0 0 chr13 7043339 7043633 -94829536 + AluY SINE Alu 1 294 -17 198 233 0 0 chr13 7043633 7043676 -94829493 - MIR SINE MIR -151 111 69 196 130 43 0 chr13 7049625 7049671 -94823498 + CT-rich Low_complexity Low_complexity 2 49 0 1873 110 3 28 chr13 7052064 7052378 -94820791 - AluSq SINE Alu 0 309 3 2428 62 0 3 chr13 7052515 7052821 -94820348 + AluY SINE Alu 1 305 -6 314 190 36 51 chr13 7053297 7053490 -94819679 + L1ME2 LINE L1 5312 5495 -685 865 240 61 51 chr13 7053557 7053869 -94819300 + L1MEd LINE L1 401 715 -5404 * 891 247 29 14 chr13 7053862 7054137 -94819032 + L1MEd LINE L1 979 1257 -4862 271 294 56 53 chr13 7054182 7054502 -94818667 + L1MEd LINE L1 1336 1656 -4473 264 344 176 0 chr13 7054644 7054769 -94818400 - L2 LINE L2 -299 2973 2827 1548 117 46 4 chr13 7054769 7055008 -94818161 + L1PA13 LINE L1 5321 5569 -596 4969 56 13 20 chr13 7055008 7056040 -94817129 - MER11A LTR ERVK 0 1266 6 3921 84 59 3 chr13 7056040 7056612 -94816557 + L1PA13 LINE L1 5560 6163 0 950 241 87 78 chr13 7056612 7056901 -94816268 + L1ME2 LINE L1 5737 6022 -142 2251 79 0 0 chr13 7056901 7057192 -94815977 - AluY SINE Alu -20 291 1 950 241 87 78 chr13 7057192 7057209 -94815960 + L1ME2 LINE L1 6022 6037 -127 1709 144 0 0 chr13 7057209 7057459 -94815710 - AluSq SINE Alu -63 250 1 950 241 87 78 chr13 7057459 7057575 -94815594 + L1ME2 LINE L1 6037 6164 0 352 181 150 8 chr13 7057588 7057721 -94815448 + L1MC5 LINE L1 7773 7924 -37 347 248 0 29 chr13 7057833 7057938 -94815231 + L1ME3A LINE L1 6068 6169 -1 695 219 6 37 chr13 7058408 7058572 -94814597 - FRAM SINE Alu -3 163 5 695 191 28 14 chr13 7058580 7058721 -94814448 - MER5B DNA MER1_type -35 143 1 1835 115 0 0 chr13 7058986 7059239 -94813930 + AluSg SINE Alu 46 298 -12 2166 79 0 36 chr13 7059301 7059606 -94813563 + AluY SINE Alu 1 294 -17 215 303 9 46 chr13 7059878 7059987 -94813182 + MIR SINE MIR 7 111 -97 1878 242 120 2 chr13 7060029 7060513 -94812656 + MLT1H LTR MaLR 9 549 0 976 231 99 0 chr13 7061102 7061384 -94811785 + MER33 DNA MER1_type 1 310 -14 723 19 88 6 chr13 7061505 7061664 -94811505 + (TA)n Simple_repeat Simple_repeat 1 172 0 662 274 39 10 chr13 7061769 7061977 -94811192 - L2 LINE L2 -1199 2115 1902 414 323 0 23 chr13 7061974 7062107 -94811062 + L2 LINE L2 2265 2394 -920 * 2155 266 110 41 chr13 7062107 7063438 -94809731 + L1MEc LINE L1 546 1968 -4428 1030 127 24 24 chr13 7063438 7063603 -94809566 + HUERS-P3 LTR ERV1 3120 3284 -5635 790 221 36 0 chr13 7063596 7063736 -94809433 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 4241 125 8 8 chr13 7063747 7064365 -94808804 + HUERS-P3 LTR ERV1 4960 5577 -3342 3774 188 51 77 chr13 7064350 7064387 -94808782 + HUERS-P3 LTR ERV1 6162 6198 -2721 * 2530 39 0 3 chr13 7064387 7064696 -94808473 + AluY SINE Alu 1 308 -3 3774 188 51 77 chr13 7064696 7065504 -94807665 + HUERS-P3 LTR ERV1 6198 6985 -1934 702 177 86 11 chr13 7065505 7065691 -94807478 + HUERS-P3 LTR ERV1 4144 4343 -537 1355 161 7 14 chr13 7065982 7066232 -94806937 + HUERS-P3 LTR ERV1 7168 8913 -6 3338 183 35 13 chr13 7066241 7066865 -94806304 + LTR9B LTR ERV1 7 644 0 953 273 117 23 chr13 7066881 7067309 -94805860 + MLT1L LTR MaLR 145 612 -3 251 340 141 19 chr13 7068272 7068478 -94804691 - L2 LINE L2 -957 2357 2127 1680 148 13 23 chr13 7068758 7069061 -94804108 - AluSx SINE Alu -12 300 1 225 310 28 0 chr13 7069187 7069258 -94803911 - L2 LINE L2 -12 3301 3229 2285 76 10 0 chr13 7069265 7069566 -94803603 + AluY SINE Alu 1 304 -7 466 203 32 57 chr13 7070182 7070305 -94802864 - FLAM_A SINE Alu -13 120 1 1950 118 31 3 chr13 7071078 7071365 -94801804 + AluSp SINE Alu 1 295 -18 4088 272 110 38 chr13 7071585 7072867 -94800302 - L1ME LINE L1 -482 5688 4499 1646 162 3 26 chr13 7072867 7073170 -94799999 - AluJb SINE Alu -16 296 1 4088 272 110 38 chr13 7073170 7073410 -94799759 - L1ME LINE L1 -1671 4499 4278 405 0 0 0 chr13 7073410 7073455 -94799714 + (TG)n Simple_repeat Simple_repeat 2 46 0 4088 272 110 38 chr13 7073455 7073488 -94799681 - L1ME LINE L1 -1892 4278 4249 1980 129 10 6 chr13 7073488 7073799 -94799370 + AluSx SINE Alu 1 312 0 4088 272 110 38 chr13 7073799 7075154 -94798015 - L1ME LINE L1 -1921 4249 2565 660 304 36 24 chr13 7075363 7075695 -94797474 - L1M4 LINE L1 -1995 4151 3816 1880 154 22 3 chr13 7075766 7076078 -94797091 - L1PA16 LINE L1 -21 6145 5828 2318 92 0 0 chr13 7076078 7076384 -94796785 - AluSq SINE Alu -7 306 1 2062 116 3 0 chr13 7076387 7076698 -94796471 - AluSx SINE Alu 0 312 1 1683 182 51 22 chr13 7076699 7077112 -94796057 - L1 LINE L1 -2139 4007 3583 728 109 0 36 chr13 7077251 7077361 -94795808 - AluSg SINE Alu -176 134 29 9949 142 23 42 chr13 7077361 7077835 -94795334 - L1PA15-16 LINE L1 -3489 3360 2878 351 0 0 0 chr13 7077835 7077874 -94795295 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1926 131 4 0 chr13 7077874 7078148 -94795021 - AluSc SINE Alu -34 275 1 9949 142 23 42 chr13 7078148 7078424 -94794745 - L1PA15-16 LINE L1 -3970 2879 2599 10169 25 19 118 chr13 7078424 7079961 -94793208 + SVA Other Other 3 1386 0 9949 142 23 42 chr13 7079961 7081289 -94791880 - L1PA15-16 LINE L1 -4250 2599 1305 2526 166 15 0 chr13 7081295 7081699 -94791470 - L1PA15-16 LINE L1 -6437 412 3 455 350 110 19 chr13 7081700 7082017 -94791152 - L1M4 LINE L1 -2322 3824 3479 576 144 33 0 chr13 7082028 7082118 -94791051 + AluSg/x SINE Alu 201 293 -16 671 176 119 6 chr13 7082462 7082621 -94790548 + MER96B DNA MER1_type? 3 179 -238 514 268 0 8 chr13 7083145 7083268 -94789901 - MER112 DNA MER1_type 0 260 139 432 0 0 0 chr13 7083286 7083334 -94789835 + (TG)n Simple_repeat Simple_repeat 2 49 0 593 257 15 49 chr13 7083384 7083597 -94789572 + MIR3 SINE MIR 13 208 0 1981 118 0 11 chr13 7083656 7083935 -94789234 + AluSx SINE Alu 1 276 -36 207 0 0 0 chr13 7083942 7083965 -94789204 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 360 0 0 0 chr13 7084588 7084628 -94788541 + (TG)n Simple_repeat Simple_repeat 2 41 0 198 269 115 13 chr13 7084703 7084781 -94788388 - MIR SINE MIR -29 233 148 755 204 62 138 chr13 7084813 7085362 -94787807 - L1MC5 LINE L1 -50 7911 7405 478 239 39 23 chr13 7085362 7085492 -94787677 - MIR SINE MIR -42 220 89 216 0 0 0 chr13 7085770 7085794 -94787375 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 270 0 0 0 chr13 7086840 7086870 -94786299 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2013 126 0 0 chr13 7086873 7087150 -94786019 - AluSx SINE Alu -25 287 11 232 337 20 0 chr13 7088913 7089011 -94784158 + L3b LINE CR1 1125 1224 -359 2161 121 26 10 chr13 7089231 7089538 -94783631 - AluSx SINE Alu 0 312 1 587 316 16 5 chr13 7090283 7090470 -94782699 - MER5A DNA MER1_type 0 189 1 198 239 209 0 chr13 7090823 7090890 -94782279 - L2 LINE L2 -1 3312 3232 244 261 153 9 chr13 7091255 7091366 -94781803 + MIR SINE MIR 81 207 -55 759 187 0 0 chr13 7091662 7091785 -94781384 - AluJb SINE Alu 0 312 190 888 198 210 24 chr13 7091787 7091944 -94781225 - AluSp SINE Alu -4 299 173 1460 127 5 9 chr13 7091944 7092164 -94781005 - AluSc SINE Alu -4 305 87 5837 129 47 17 chr13 7092166 7093107 -94780062 + LTR5 LTR ERVK 1 969 0 888 198 210 24 chr13 7093107 7093198 -94779971 - AluSp SINE Alu -130 173 1 2449 92 0 0 chr13 7093938 7094241 -94778928 + AluSc SINE Alu 1 303 -6 2138 125 10 0 chr13 7094293 7094589 -94778580 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr13 7094594 7094617 -94778552 + (CA)n Simple_repeat Simple_repeat 2 24 0 922 116 0 0 chr13 7095239 7095360 -94777809 - FRAM SINE Alu -28 148 28 2943 183 42 34 chr13 7095360 7095973 -94777196 + MER54A LTR ERVL 284 901 0 891 67 117 0 chr13 7097695 7097815 -94775354 - MER85 DNA T2_type -2 137 4 1798 174 3 10 chr13 7099168 7099478 -94773691 - AluJb SINE Alu -4 308 1 12053 206 21 10 chr13 7100628 7104361 -94768808 - L1PA16 LINE L1 -9 6157 2348 2145 126 0 0 chr13 7104363 7104656 -94768513 + AluSg SINE Alu 1 293 -17 2220 130 0 0 chr13 7107516 7107823 -94765346 - AluSx SINE Alu -5 307 1 1691 210 36 0 chr13 7109264 7109593 -94763576 - MER7A DNA MER2_type -7 339 1 21 0 0 0 chr13 7110252 7110273 -94762896 + AT_rich Low_complexity Low_complexity 1 21 0 3333 125 32 51 chr13 7110290 7110880 -94762289 - LTR14B LTR ERVK -13 595 17 417 295 114 18 chr13 7110975 7111141 -94762028 - MER5A DNA MER1_type 0 189 8 239 368 0 11 chr13 7111176 7111263 -94761906 - MER5A DNA MER1_type -31 158 73 2471 176 55 16 chr13 7111401 7111891 -94761278 - LTR22 LTR ERVK 0 509 1 1744 170 0 14 chr13 7112024 7112313 -94760856 + AluJo SINE Alu 1 285 -27 2149 116 0 25 chr13 7112324 7112644 -94760525 + AluSq SINE Alu 1 312 -1 459 271 172 36 chr13 7113815 7114036 -94759133 + MIR SINE MIR 2 252 -10 243 225 231 31 chr13 7114202 7114362 -94758807 - Charlie7 DNA MER1_type 0 2612 2421 337 269 135 7 chr13 7114602 7114743 -94758426 - L1ME LINE L1 -379 5742 5584 789 169 8 0 chr13 7114762 7114886 -94758283 - FLAM_C SINE Alu -7 126 2 2168 123 0 3 chr13 7115626 7115927 -94757242 + AluSx SINE Alu 1 300 -12 1297 135 5 10 chr13 7117176 7117376 -94755793 - AluSg/x SINE Alu -30 282 84 185 352 77 40 chr13 7117852 7118099 -94755070 - L2 LINE L2 -912 2402 2147 843 215 15 80 chr13 7118224 7118549 -94754620 + L1M4 LINE L1 972 1275 -5267 5328 100 28 10 chr13 7118550 7119350 -94753819 + L1PA16 LINE L1 5351 6164 -2 2312 192 61 42 chr13 7119343 7119453 -94753716 + L1M4 LINE L1 1255 1361 -5285 * 1765 159 30 14 chr13 7119453 7119749 -94753420 + AluJo SINE Alu 7 307 -5 2312 192 61 42 chr13 7119749 7120289 -94752880 + L1M4 LINE L1 1361 1918 -4728 1738 177 14 0 chr13 7120292 7120574 -94752595 + AluJb SINE Alu 4 289 -23 2219 112 3 0 chr13 7120921 7121215 -94751954 + AluSp SINE Alu 1 295 -18 1834 137 3 27 chr13 7121394 7121686 -94751483 - LTR22A LTR ERVK 0 458 174 6746 103 9 3 chr13 7121686 7122615 -94750554 - HERVK22 LTR ERVK -3760 3077 2144 6071 132 20 2 chr13 7122615 7123532 -94749637 - HERVK22 LTR ERVK -5902 935 3 3105 121 4 11 chr13 7123534 7123989 -94749180 - LTR22A LTR ERVK 0 458 7 787 194 65 19 chr13 7124035 7124190 -94748979 - AluJo/FRAM SINE Alu -17 295 134 479 195 52 0 chr13 7124193 7124270 -94748899 - AluJ/FLAM SINE Alu -230 82 2 847 156 0 8 chr13 7124375 7124503 -94748666 + FLAM_C SINE Alu 2 128 -5 472 278 60 60 chr13 7124655 7124889 -94748280 - MIR SINE MIR -14 248 15 2532 53 0 22 chr13 7125519 7125837 -94747332 + AluY SINE Alu 1 311 0 223 218 23 35 chr13 7126334 7126421 -94746748 + A-rich Low_complexity Low_complexity 2 87 0 542 120 20 30 chr13 7127512 7127612 -94745557 - L1MA10 LINE L1 -1 6333 6235 252 208 0 0 chr13 7128089 7128142 -94745027 - L1ME3A LINE L1 -11 6159 6107 2129 209 43 9 chr13 7128178 7128624 -94744545 - MER65C LTR ERV1 0 461 1 307 255 0 0 chr13 7128638 7128724 -94744445 - L1ME3 LINE L1 -174 5996 5911 2167 124 0 19 chr13 7128725 7129032 -94744137 + AluSx SINE Alu 1 301 -11 3776 185 54 68 chr13 7129135 7129580 -94743589 - Charlie5 DNA MER1_type -846 1778 1328 1829 156 3 29 chr13 7129580 7129887 -94743282 + AluJb SINE Alu 1 299 -13 3776 185 54 68 chr13 7129887 7129934 -94743235 - Charlie5 DNA MER1_type -1296 1328 1282 1666 172 10 10 chr13 7129934 7130237 -94742932 + AluJb SINE Alu 3 305 -7 3776 185 54 68 chr13 7130237 7130738 -94742431 - Charlie5 DNA MER1_type -1342 1282 798 800 205 0 13 chr13 7130738 7130889 -94742280 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 7130885 7130928 -94742241 - Tigger2 DNA MER2_type -253 2465 2423 * 1575 150 71 11 chr13 7130981 7131261 -94741908 + Tigger2 DNA MER2_type 2422 2718 0 3110 201 84 10 chr13 7131270 7131598 -94741571 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 7131598 7131961 -94741208 + MSTD LTR MaLR 1 396 0 3110 201 84 10 chr13 7131961 7132360 -94740809 - Charlie5 DNA MER1_type -2136 488 9 2237 77 7 13 chr13 7132383 7132683 -94740486 - AluY SINE Alu -13 298 1 481 248 121 27 chr13 7132715 7133010 -94740159 - L1MC4a LINE L1 -1903 5905 5548 248 244 81 24 chr13 7133113 7133236 -94739933 - L1MC4a LINE L1 -2331 5477 5348 1518 240 271 25 chr13 7133401 7133821 -94739348 + L2 LINE L2 1548 1863 -1451 220 36 0 0 chr13 7133821 7133849 -94739320 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2185 85 21 4 chr13 7133849 7134130 -94739039 - AluSq SINE Alu -1 313 1 1518 240 271 25 chr13 7134130 7134438 -94738731 + L2 LINE L2 1862 2457 -857 257 212 106 97 chr13 7134421 7134534 -94738635 - L2 LINE L2 -2674 640 527 * 206 32 32 0 chr13 7134540 7134571 -94738598 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1984 139 3 7 chr13 7134571 7134860 -94738309 - AluSx SINE Alu -18 289 1 813 150 0 8 chr13 7134862 7134989 -94738180 - AluJb SINE Alu -16 296 171 380 261 369 11 chr13 7134997 7135357 -94737812 - L2 LINE L2 -2793 521 33 403 319 292 0 chr13 7135424 7135585 -94737584 + L2 LINE L2 2973 3086 -227 204 40 0 0 chr13 7135585 7135610 -94737559 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 319 292 0 chr13 7135610 7135708 -94737461 + L2 LINE L2 3086 3308 -5 1015 144 6 35 chr13 7137934 7138108 -94735061 + AluJo SINE Alu 120 288 -24 204 242 22 132 chr13 7138598 7138689 -94734480 - L2 LINE L2 -5 3267 3187 193 303 110 19 chr13 7138680 7138835 -94734334 + L3 LINE CR1 1101 1269 -308 * 604 197 25 8 chr13 7139004 7139126 -94734043 - Charlie1 DNA MER1_type 0 2761 2638 2119 109 7 3 chr13 7139127 7139411 -94733758 + AluSx SINE Alu 1 285 -27 683 219 0 0 chr13 7139952 7140071 -94733098 - FLAM_A SINE Alu -10 123 5 2105 130 7 3 chr13 7140114 7140407 -94732762 - AluSx SINE Alu -18 294 1 706 251 51 122 chr13 7140499 7141025 -94732144 - L1MC4 LINE L1 -1 8041 7553 1523 137 76 54 chr13 7141035 7141335 -94731834 - AluSx SINE Alu 0 306 1 35 63 0 0 chr13 7142017 7142080 -94731089 + AT_rich Low_complexity Low_complexity 1 63 0 233 296 157 0 chr13 7144678 7144786 -94728383 - L1MC/D LINE L1 -1904 5904 5780 389 221 136 14 chr13 7144906 7145046 -94728123 - L1ME4a LINE L1 -6 6115 5959 1405 189 148 84 chr13 7146005 7146444 -94726725 - MLT1C LTR MaLR 0 467 1 251 180 0 33 chr13 7146496 7146557 -94726612 + MER46C DNA MER2_type 83 141 -197 692 254 35 22 chr13 7146772 7147000 -94726169 - L1M4c LINE L1 -6124 260 30 392 192 26 0 chr13 7147015 7147093 -94726076 + MER46C DNA MER2_type 256 335 -3 382 269 37 37 chr13 7147479 7147613 -94725556 - MIR SINE MIR -108 154 21 1987 151 3 0 chr13 7147636 7147941 -94725228 - AluJb SINE Alu -6 306 1 364 281 97 42 chr13 7148173 7148411 -94724758 - L1ME4a LINE L1 -2262 5546 5296 931 268 236 20 chr13 7148503 7148999 -94724170 + L2 LINE L2 2149 2536 -777 2130 80 23 47 chr13 7148999 7149298 -94723871 - AluSp SINE Alu -21 292 1 931 268 236 20 chr13 7149298 7149674 -94723495 + L2 LINE L2 2536 3215 -98 887 167 54 12 chr13 7149676 7149844 -94723325 - AluJo SINE Alu -17 295 121 291 307 0 0 chr13 7149844 7149919 -94723250 + L2 LINE L2 3236 3310 -3 409 234 103 0 chr13 7150680 7150825 -94722344 + L1M4 LINE L1 5021 5180 -966 517 218 84 101 chr13 7151226 7151455 -94721714 - L1MC5 LINE L1 -35 7926 7704 1875 132 7 7 chr13 7151455 7151735 -94721434 + AluSx SINE Alu 1 280 -32 517 218 84 101 chr13 7151735 7151872 -94721297 - L1MC5 LINE L1 -257 7704 7566 243 281 18 0 chr13 7152172 7152229 -94720940 - L2 LINE L2 0 3272 3215 359 224 109 90 chr13 7152229 7152385 -94720784 - L1MC/D LINE L1 -2098 5710 5552 1032 145 70 0 chr13 7152398 7152570 -94720599 - AluSg/x SINE Alu -11 299 116 529 250 30 43 chr13 7153103 7153267 -94719902 - MER3 DNA MER1_type 0 209 48 280 272 152 0 chr13 7153726 7153818 -94719351 - L2 LINE L2 -4 3268 3163 365 267 64 45 chr13 7153818 7154020 -94719149 - L1MC4 LINE L1 -965 7077 6872 2102 72 72 10 chr13 7154032 7154357 -94718812 - AluY SINE Alu 0 343 1 1136 185 37 8 chr13 7157055 7157298 -94715871 + L1MB3 LINE L1 5931 6180 -3 589 231 32 32 chr13 7157490 7157646 -94715523 - L2 LINE L2 -38 3275 3120 604 267 287 22 chr13 7157879 7158929 -94714240 - L2 LINE L2 -537 2777 1450 304 275 180 5 chr13 7159332 7159521 -94713648 - L1MC4 LINE L1 0 8042 7821 284 167 39 13 chr13 7159622 7159700 -94713469 - L2 LINE L2 -2464 850 771 946 170 71 11 chr13 7160585 7160767 -94712402 + MER46A DNA MER2_type 44 236 0 325 304 121 4 chr13 7161040 7161432 -94711737 - L1MC/D LINE L1 -592 5570 5127 698 225 0 0 chr13 7161702 7161831 -94711338 + Tigger1 DNA MER2_type 10 138 -2280 3917 96 19 13 chr13 7161843 7162366 -94710803 - MER1A DNA MER1_type -1 526 1 352 198 86 35 chr13 7162389 7162505 -94710664 - L1M4 LINE L1 -905 5241 5120 444 244 74 15 chr13 7162795 7162930 -94710239 + MIR SINE MIR 49 191 -71 241 229 43 29 chr13 7163169 7163239 -94709930 + MER116 DNA Mariner 1 71 -9 219 301 73 32 chr13 7163290 7163413 -94709756 + L2 LINE L2 2618 2745 -569 227 267 0 0 chr13 7163423 7163483 -94709686 + Charlie7 DNA MER1_type 38 97 -2515 21 36 0 0 chr13 7163924 7163952 -94709217 + AT_rich Low_complexity Low_complexity 1 28 0 562 203 13 51 chr13 7164923 7165081 -94708088 + L1MC5 LINE L1 7059 7210 -751 30 59 0 0 chr13 7166228 7166279 -94706890 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr13 7167234 7167257 -94705912 + AT_rich Low_complexity Low_complexity 1 23 0 642 187 0 0 chr13 7167384 7167839 -94705330 + (TA)n Simple_repeat Simple_repeat 1 455 0 22 35 0 0 chr13 7168791 7168820 -94704349 + GC_rich Low_complexity Low_complexity 1 29 0 2293 95 0 25 chr13 7170475 7170791 -94702378 - AluSx SINE Alu -4 308 1 1136 142 6 0 chr13 7171030 7171206 -94701963 - AluSg/x SINE Alu 0 310 134 195 42 0 0 chr13 7171476 7171500 -94701669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1900 150 0 7 chr13 7171503 7171789 -94701380 - AluSx SINE Alu -28 284 1 1308 214 23 8 chr13 7172037 7172303 -94700866 - L1MB8 LINE L1 -6 6172 5903 26 0 0 0 chr13 7173036 7173062 -94700107 + AT_rich Low_complexity Low_complexity 1 26 0 642 257 30 15 chr13 7174069 7174271 -94698898 + L1MA6 LINE L1 5746 5950 -350 490 213 9 0 chr13 7174272 7174380 -94698789 + L1MA4A LINE L1 5746 5854 -449 538 127 218 0 chr13 7174423 7174533 -94698636 - MER1B DNA MER1_type -163 134 1 364 282 117 70 chr13 7174533 7174746 -94698423 + L2 LINE L2 2673 2895 -419 270 116 47 0 chr13 7175491 7175555 -94697614 - Alu SINE Alu 0 306 241 2210 92 7 10 chr13 7175611 7175949 -94697220 + AluSx SINE Alu 1 312 0 1700 162 7 23 chr13 7176345 7176647 -94696522 + AluJb SINE Alu 2 298 -14 384 335 60 38 chr13 7176657 7177105 -94696064 - L1ME4a LINE L1 -143 5978 5521 2257 121 0 0 chr13 7179054 7179359 -94693810 - AluSx SINE Alu -7 305 1 1221 120 54 7 chr13 7179575 7179939 -94693230 + MSTA LTR MaLR 3 426 -2 2216 97 3 19 chr13 7180529 7180838 -94692331 + AluSc SINE Alu 1 304 -5 203 189 0 57 chr13 7181433 7181486 -94691683 + GA-rich Low_complexity Low_complexity 2 51 0 2089 77 14 7 chr13 7181592 7181878 -94691291 + AluSx SINE Alu 1 288 -24 2702 133 29 16 chr13 7182132 7182795 -94690374 + L1M2 LINE L1 4915 5584 -728 272 310 106 9 chr13 7183372 7183485 -94689684 - L2 LINE L2 -518 2796 2673 2073 122 6 6 chr13 7183817 7184129 -94689040 + AluSx SINE Alu 1 312 0 2397 58 0 48 chr13 7184935 7185247 -94687922 - AluY SINE Alu -14 297 1 324 0 0 0 chr13 7186619 7186655 -94686514 + (TG)n Simple_repeat Simple_repeat 2 37 0 2522 41 0 0 chr13 7186753 7187045 -94686124 - AluY SINE Alu -19 292 1 201 275 0 0 chr13 7187241 7187281 -94685888 - L2 LINE L2 -2918 396 357 1659 128 0 8 chr13 7187676 7187918 -94685251 + AluSx SINE Alu 1 240 -72 225 154 0 0 chr13 7187928 7187967 -94685202 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1065 127 33 0 chr13 7188806 7188956 -94684213 + AluJb SINE Alu 130 284 -28 2246 105 0 0 chr13 7189198 7189493 -94683676 + AluSc SINE Alu 1 295 -14 2223 105 0 0 chr13 7190018 7190314 -94682855 - AluY SINE Alu -15 296 1 243 217 36 84 chr13 7190445 7190528 -94682641 + MIR SINE MIR 117 195 -67 22 0 0 0 chr13 7191855 7191877 -94681292 + AT_rich Low_complexity Low_complexity 1 22 0 316 219 45 69 chr13 7192689 7192875 -94680294 - L1MC/D LINE L1 -2339 5469 5289 1012 221 16 72 chr13 7192890 7193197 -94679972 - AluJo SINE Alu -12 290 1 321 313 136 43 chr13 7193197 7193467 -94679702 - L1MC/D LINE L1 -842 5304 5061 2166 83 7 0 chr13 7193467 7193745 -94679424 + AluSp SINE Alu 15 294 -19 321 313 136 43 chr13 7193745 7194097 -94679072 - L1MC/D LINE L1 -1085 5061 4624 201 94 0 0 chr13 7194156 7194188 -94678981 + (T)n Simple_repeat Simple_repeat 1 32 0 4962 129 38 21 chr13 7194274 7194336 -94678833 + L1PA16 LINE L1 5286 5345 -821 2389 73 0 7 chr13 7194336 7194638 -94678531 - AluY SINE Alu -9 302 3 4962 129 38 21 chr13 7194638 7195438 -94677731 + L1PA16 LINE L1 5345 6163 -3 23 33 0 0 chr13 7195877 7195907 -94677262 + AT_rich Low_complexity Low_complexity 1 30 0 2104 116 0 26 chr13 7195929 7196239 -94676930 - AluSx SINE Alu -10 302 1 21 0 0 0 chr13 7196962 7196983 -94676186 + AT_rich Low_complexity Low_complexity 1 21 0 1720 181 0 7 chr13 7196988 7197280 -94675889 - AluJo SINE Alu -22 290 1 261 348 31 10 chr13 7198161 7198261 -94674908 - MIR SINE MIR -99 109 7 590 280 21 74 chr13 7198367 7198610 -94674559 - MER102b DNA MER1_type -1 340 111 872 125 0 0 chr13 7199116 7199236 -94673933 + FLAM_C SINE Alu 2 121 -12 21 0 0 0 chr13 7199510 7199531 -94673638 + AT_rich Low_complexity Low_complexity 1 21 0 1899 163 0 3 chr13 7199709 7200003 -94673166 + AluJb SINE Alu 1 293 -19 236 289 126 50 chr13 7200241 7200400 -94672769 - L3 LINE CR1 -88 1489 1319 1944 150 6 25 chr13 7200637 7200951 -94672218 + AluSx SINE Alu 1 308 -4 300 143 0 79 chr13 7202144 7202207 -94670962 - MLT1C LTR MaLR -409 58 1 1213 169 22 142 chr13 7202211 7202346 -94670823 - MLT1C-int LTR MaLR -4 1367 1217 1935 148 0 0 chr13 7202346 7202624 -94670545 + AluSx SINE Alu 17 294 -18 1213 169 22 142 chr13 7202624 7202854 -94670315 - MLT1C-int LTR MaLR -154 1217 1046 1620 188 10 23 chr13 7203080 7203383 -94669786 + AluJo SINE Alu 1 299 -13 1525 177 0 71 chr13 7203917 7204228 -94668941 - AluJo SINE Alu -23 289 1 937 177 11 17 chr13 7204317 7204492 -94668677 + AluJo SINE Alu 35 208 -104 8660 218 119 29 chr13 7204493 7206439 -94666730 - L1M4 LINE L1 -846 5536 3767 2125 104 10 7 chr13 7206439 7206737 -94666432 - AluY SINE Alu -12 299 1 8660 218 119 29 chr13 7206737 7209386 -94663783 - L1M4 LINE L1 -2615 3767 526 289 200 0 0 chr13 7212135 7212180 -94660989 + MER3 DNA MER1_type 46 90 -119 * 866 115 7 47 chr13 7212141 7212289 -94660880 - MER3 DNA MER1_type -4 205 64 769 180 90 198 chr13 7212289 7212733 -94660436 - MSTD LTR MaLR 0 396 1 464 370 94 36 chr13 7212799 7213320 -94659849 - L2 LINE L2 -550 2764 2214 250 314 176 17 chr13 7214034 7214273 -94658896 - L2 LINE L2 -1093 2221 1945 253 286 101 25 chr13 7214590 7214709 -94658460 + L3 LINE CR1 476 603 -974 1698 181 7 3 chr13 7216123 7216411 -94656758 + AluJb SINE Alu 1 289 -23 1833 155 18 3 chr13 7216466 7216750 -94656419 - AluSx SINE Alu -24 288 1 26 0 0 0 chr13 7216981 7217007 -94656162 + AT_rich Low_complexity Low_complexity 1 26 0 285 266 75 0 chr13 7217156 7217250 -94655919 - L1MC4a LINE L1 -1869 5939 5839 27 29 0 0 chr13 7218048 7218082 -94655087 + AT_rich Low_complexity Low_complexity 1 34 0 4460 152 67 17 chr13 7219205 7219437 -94653732 + MER6 DNA MER2_type 1 220 -645 360 0 0 0 chr13 7219437 7219477 -94653692 + (TG)n Simple_repeat Simple_repeat 2 41 0 4460 152 67 17 chr13 7219477 7220067 -94653102 + MER6 DNA MER2_type 220 864 -1 500 262 166 0 chr13 7220292 7220479 -94652690 + MIR SINE MIR 26 243 -19 398 265 31 10 chr13 7222730 7222828 -94650341 + L2 LINE L2 3200 3299 -14 314 262 119 0 chr13 7222855 7222981 -94650188 + L1ME4a LINE L1 5978 6118 -3 1473 164 80 0 chr13 7223102 7223364 -94649805 + AluJb SINE Alu 11 293 -19 1870 108 4 4 chr13 7223706 7223975 -94649194 - AluSg1 SINE Alu 0 309 41 1472 161 37 37 chr13 7224500 7224798 -94648371 + AluJo SINE Alu 1 298 -14 1731 149 46 7 chr13 7225028 7225310 -94647859 - AluSg SINE Alu -12 298 6 1655 152 37 4 chr13 7225721 7225990 -94647179 + AluJo SINE Alu 1 278 -34 21 0 0 0 chr13 7226191 7226212 -94646957 + AT_rich Low_complexity Low_complexity 1 21 0 553 265 125 5 chr13 7226647 7226847 -94646322 - MIR SINE MIR -38 224 1 3283 147 46 18 chr13 7226932 7227611 -94645558 - L1MB4 LINE L1 -7 6671 5974 5579 50 81 1 chr13 7227623 7228367 -94644802 - L1PA7 LINE L1 -2 6152 5350 42764 33 23 1 chr13 7228379 7234402 -94638767 - L1PA3 LINE L1 0 6155 2 2349 77 0 3 chr13 7234418 7234715 -94638454 - AluY SINE Alu -15 296 1 778 133 36 182 chr13 7234716 7234886 -94638283 - L1MB4 LINE L1 -709 5969 5845 1638 194 13 3 chr13 7234886 7235185 -94637984 - AluJo SINE Alu -6 306 5 778 133 36 182 chr13 7235185 7235292 -94637877 - L1MB4 LINE L1 -833 5845 5724 1913 171 65 36 chr13 7235293 7235364 -94637805 - Tigger2a DNA MER2_type -2274 434 367 1434 172 12 106 chr13 7235364 7235695 -94637474 - AluJo SINE Alu -2 300 1 1913 171 65 36 chr13 7235695 7236037 -94637132 - Tigger2a DNA MER2_type -2341 367 9 4063 185 43 138 chr13 7236044 7237162 -94636007 - L1MB4 LINE L1 -920 5724 4501 414 0 0 0 chr13 7237162 7237208 -94635961 + (TG)n Simple_repeat Simple_repeat 2 47 0 4063 185 43 138 chr13 7237208 7237616 -94635553 - L1MB4 LINE L1 -2143 4501 4355 1609 201 0 16 chr13 7237616 7237930 -94635239 - AluJb SINE Alu 0 312 4 4063 185 43 138 chr13 7237930 7238005 -94635164 - L1MB4 LINE L1 -2289 4355 4274 2096 169 26 3 chr13 7238005 7238354 -94634815 - MER73 LTR ERVL 0 644 288 * 2195 174 23 8 chr13 7238350 7238734 -94634435 - MER54A LTR ERVL -509 392 3 4758 218 51 21 chr13 7238735 7239170 -94633999 - L1MB4 LINE L1 -2367 4277 3856 2127 126 7 0 chr13 7239170 7239464 -94633705 + AluSx SINE Alu 1 296 -16 4758 218 51 21 chr13 7239464 7240731 -94632438 - L1MB4 LINE L1 -2788 3856 2521 2008 177 93 7 chr13 7240762 7241213 -94631956 - L1MB2 LINE L1 -1 6170 5681 * 3901 189 123 55 chr13 7241212 7241843 -94631326 - L1MB4 LINE L1 -4125 2521 1934 2280 103 3 3 chr13 7241843 7242155 -94631014 - AluSx SINE Alu 0 312 1 216 0 0 0 chr13 7242156 7242180 -94630989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1974 132 3 3 chr13 7242182 7242469 -94630700 - AluSx SINE Alu -25 287 1 3901 189 123 55 chr13 7242469 7242649 -94630520 - L1MB4 LINE L1 -4712 1934 1768 1920 208 47 13 chr13 7242649 7243101 -94630068 - MLT1C LTR MaLR 0 467 1 3901 189 123 55 chr13 7243101 7243531 -94629638 - L1MB4 LINE L1 -4878 1768 1189 3040 146 64 39 chr13 7243615 7244144 -94629025 - LTR9 LTR ERV1 -37 575 30 1973 143 7 0 chr13 7244144 7244451 -94628718 - AluSx SINE Alu -1 311 3 3040 146 64 39 chr13 7244451 7244482 -94628687 - LTR9 LTR ERV1 -582 30 1 508 207 107 0 chr13 7244651 7244791 -94628378 - L1M2 LINE L1 -4159 2690 2536 2094 118 0 0 chr13 7244826 7245105 -94628064 - AluSg SINE Alu -31 279 1 445 211 68 23 chr13 7245137 7245270 -94627899 - L1MB4 LINE L1 -5587 955 817 405 278 23 8 chr13 7245358 7245491 -94627678 - L1MB4 LINE L1 -5710 936 802 309 249 93 63 chr13 7245796 7246001 -94627168 - L1MB4 LINE L1 -6293 249 39 276 264 64 43 chr13 7246402 7246542 -94626627 + L1MC4 LINE L1 7190 7332 -710 255 256 65 87 chr13 7246648 7246952 -94626217 + L1MC4 LINE L1 7274 7677 -365 1945 128 11 3 chr13 7248230 7248512 -94624657 + AluSx SINE Alu 7 290 -22 2387 90 3 0 chr13 7248512 7248812 -94624357 + AluSp SINE Alu 1 301 -12 1062 118 0 20 chr13 7248812 7248965 -94624204 - AluSq/x SINE Alu -162 151 2 1100 155 98 136 chr13 7249188 7249253 -94623916 - MLT1A1 LTR MaLR 0 365 299 1955 5 0 0 chr13 7249253 7249465 -94623704 + AluYa5 SINE Alu 100 311 0 1100 155 98 136 chr13 7249465 7249767 -94623402 - MLT1A1 LTR MaLR -66 299 12 349 254 98 33 chr13 7250163 7250285 -94622884 - HAL1 LINE L1 -100 2407 2278 1360 182 102 15 chr13 7250555 7250819 -94622350 - AluJb SINE Alu -25 287 1 600 277 80 9 chr13 7250834 7251058 -94622111 - HAL1 LINE L1 -628 1879 1640 454 220 87 144 chr13 7251694 7251958 -94621211 - MIR SINE MIR -10 252 4 2189 107 0 10 chr13 7252891 7253190 -94619979 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr13 7253743 7253765 -94619404 + AT_rich Low_complexity Low_complexity 1 22 0 808 245 76 8 chr13 7254236 7254473 -94618696 + MER46C DNA MER2_type 86 338 0 1849 164 0 10 chr13 7254479 7254778 -94618391 - AluJo SINE Alu -16 296 1 208 198 169 0 chr13 7254972 7255028 -94618141 - MIR SINE MIR -76 132 67 2025 118 3 37 chr13 7255856 7256179 -94616990 + AluSx SINE Alu 1 312 0 13885 190 32 29 chr13 7256182 7262577 -94610592 + L1PB1 LINE L1 136 6864 -3 2337 73 0 23 chr13 7263361 7263662 -94609507 + AluSx SINE Alu 1 294 -18 1805 122 11 8 chr13 7264431 7264694 -94608475 + AluSx SINE Alu 42 305 -7 2179 110 0 3 chr13 7264921 7265213 -94607956 + AluSg SINE Alu 1 291 -19 464 213 46 9 chr13 7265256 7265364 -94607805 - L1ME1 LINE L1 -6 6160 6049 25 0 0 0 chr13 7265657 7265682 -94607487 + AT_rich Low_complexity Low_complexity 1 25 0 1247 294 88 13 chr13 7265837 7266292 -94606877 - L2 LINE L2 0 3313 2825 22 0 0 0 chr13 7266790 7266812 -94606357 + AT_rich Low_complexity Low_complexity 1 22 0 717 191 30 0 chr13 7267631 7267762 -94605407 + FRAM SINE Alu 1 135 -41 364 283 172 0 chr13 7267762 7267907 -94605262 - L3 LINE CR1 -731 846 677 1335 98 113 0 chr13 7268285 7268489 -94604680 + MER30 DNA MER1_type 4 230 0 496 224 97 30 chr13 7268801 7268966 -94604203 - MIR SINE MIR -1 261 86 2249 119 3 0 chr13 7269018 7269329 -94603840 - AluSx SINE Alu 0 312 1 409 329 127 21 chr13 7269711 7269948 -94603221 - MIR SINE MIR 0 262 1 653 172 6 38 chr13 7269986 7270064 -94603105 - L1MB3 LINE L1 -12 6171 6099 2283 106 0 3 chr13 7270064 7270366 -94602803 + AluSx SINE Alu 1 301 -11 653 172 6 38 chr13 7270366 7270444 -94602725 - L1MB3 LINE L1 -84 6099 6020 23 33 0 0 chr13 7270446 7270476 -94602693 + AT_rich Low_complexity Low_complexity 1 30 0 689 218 0 0 chr13 7270728 7270852 -94602317 + FLAM_A SINE Alu 1 124 -9 330 329 7 20 chr13 7270928 7271022 -94602147 - MARNA DNA Mariner -179 407 314 1439 91 68 27 chr13 7271022 7271243 -94601926 - MER30 DNA MER1_type 0 230 1 330 329 7 20 chr13 7271243 7271294 -94601875 - MARNA DNA Mariner -272 314 264 384 301 0 32 chr13 7271575 7271698 -94601471 - L2 LINE L2 -5 3267 3149 2236 93 3 0 chr13 7272689 7272978 -94600191 - AluSp SINE Alu -23 290 1 2537 57 0 0 chr13 7273821 7274122 -94599047 - AluY SINE Alu -10 301 1 225 0 0 0 chr13 7274593 7274618 -94598551 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2069 125 0 0 chr13 7274618 7274898 -94598271 - AluSx SINE Alu -32 280 1 318 238 30 50 chr13 7275918 7276019 -94597150 + MIR SINE MIR 164 262 0 1056 288 95 29 chr13 7276719 7277032 -94596137 - L1ME3 LINE L1 -211 5951 5660 2201 101 7 14 chr13 7277032 7277328 -94595841 + AluSg SINE Alu 1 294 -16 1056 288 95 29 chr13 7277328 7277823 -94595346 - L1ME3 LINE L1 -502 5660 5054 2307 100 0 3 chr13 7277823 7278123 -94595046 + AluSg SINE Alu 1 299 -11 1056 288 95 29 chr13 7278123 7278427 -94594742 - L1ME3 LINE L1 -1108 5054 4771 490 232 21 0 chr13 7279234 7279304 -94593865 - MER69 DNA AcHobo -2 2524 2457 1731 163 22 0 chr13 7279304 7279581 -94593588 + AluJb SINE Alu 1 283 -29 490 232 21 0 chr13 7279581 7279652 -94593517 - MER69 DNA AcHobo -69 2457 2380 288 183 157 166 chr13 7280016 7280251 -94592918 - MIR SINE MIR -24 238 6 24 0 0 0 chr13 7281289 7281313 -94591856 + AT_rich Low_complexity Low_complexity 1 24 0 334 276 163 44 chr13 7281481 7281684 -94591485 - MIR SINE MIR -1 261 35 1748 172 3 7 chr13 7282566 7282863 -94590306 - AluJb SINE Alu -16 296 1 21 36 0 0 chr13 7282906 7282934 -94590235 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr13 7283098 7283146 -94590023 + AT_rich Low_complexity Low_complexity 1 48 0 1120 196 84 39 chr13 7283382 7283521 -94589648 - MLT1F LTR MaLR 0 542 411 1791 159 77 11 chr13 7283521 7283873 -94589296 - THE1C LTR MaLR 0 375 1 1120 196 84 39 chr13 7283873 7284018 -94589151 - MLT1F LTR MaLR -131 411 245 352 327 155 9 chr13 7285596 7285945 -94587224 - L2 LINE L2 -26 3287 2888 3701 172 87 38 chr13 7287964 7288895 -94584274 - L1MB8 LINE L1 0 6178 5200 599 216 36 0 chr13 7288895 7289006 -94584163 - FLAM_A SINE Alu -18 115 1 3701 172 87 38 chr13 7289006 7289109 -94584060 - L1MB8 LINE L1 -978 5200 5104 2864 3 0 0 chr13 7289870 7290175 -94582994 + AluYa5 SINE Alu 1 305 -6 402 236 217 19 chr13 7290724 7290885 -94582284 + L2 LINE L2 3121 3313 0 1008 221 206 48 chr13 7291097 7291443 -94581726 - MLT1F LTR MaLR -8 534 96 1691 177 3 29 chr13 7291443 7291616 -94581553 - AluJo SINE Alu -9 303 140 2421 70 0 19 chr13 7291616 7291928 -94581241 - AluY SINE Alu -5 306 1 1691 177 3 29 chr13 7291928 7292065 -94581104 - AluJo SINE Alu -172 140 1 1008 221 206 48 chr13 7292065 7292179 -94580990 - MLT1F LTR MaLR -446 96 1 264 300 100 0 chr13 7292529 7292629 -94580540 - MIR SINE MIR -53 209 100 2079 131 14 0 chr13 7293018 7293315 -94579854 - AluSx SINE Alu -11 301 1 2237 104 3 0 chr13 7293315 7293612 -94579557 - AluSg SINE Alu -12 298 1 2258 93 30 3 chr13 7293640 7293941 -94579228 - AluSp SINE Alu -4 309 1 190 237 26 0 chr13 7294224 7294262 -94578907 - L2 LINE L2 -20 3252 3214 238 135 0 0 chr13 7294449 7294486 -94578683 + L1MA4A LINE L1 6173 6209 -94 226 187 93 27 chr13 7295037 7295112 -94578057 + HAL1b LINE L1 1228 1307 -41 3809 105 58 27 chr13 7295117 7295737 -94577432 - L1MA4A LINE L1 -8 6295 5657 3948 181 45 36 chr13 7296054 7296096 -94577073 - L1MB3 LINE L1 -1 6182 6142 2260 84 7 10 chr13 7296096 7296393 -94576776 - AluSx SINE Alu -16 296 1 3948 181 45 36 chr13 7296393 7296737 -94576432 - L1MB3 LINE L1 -41 6142 5803 8386 117 56 5 chr13 7296737 7297974 -94575195 + HSMAR2 DNA Mariner 2 1301 -1 3948 181 45 36 chr13 7297974 7298638 -94574531 - L1MB3 LINE L1 -380 5803 5021 425 251 160 76 chr13 7299555 7299830 -94573339 + MER102b DNA MER1_type 17 314 -27 2094 198 97 20 chr13 7300063 7300558 -94572611 - MLT2B3 LTR ERVL -21 533 1 2078 138 81 3 chr13 7301753 7302101 -94571068 - THE1C LTR MaLR 0 375 1 394 264 165 39 chr13 7302395 7302835 -94570334 - L1ME LINE L1 -519 5645 5127 2099 112 49 0 chr13 7302835 7303121 -94570048 - AluSx SINE Alu -12 300 1 394 264 165 39 chr13 7303121 7303177 -94569992 - L1ME LINE L1 -1037 5127 5079 384 218 34 0 chr13 7303266 7303413 -94569756 + (TA)n Simple_repeat Simple_repeat 2 153 0 230 149 0 21 chr13 7303419 7303466 -94569703 + Alu SINE Alu 59 104 -198 2091 137 3 0 chr13 7303683 7303983 -94569186 - AluSx SINE Alu -11 301 1 225 151 57 38 chr13 7304221 7304274 -94568895 - L2 LINE L2 -12 3260 3207 2499 56 0 34 chr13 7304456 7304778 -94568391 + AluY SINE Alu 1 311 0 23 33 0 0 chr13 7305343 7305373 -94567796 + AT_rich Low_complexity Low_complexity 1 30 0 230 232 18 0 chr13 7306090 7306146 -94567023 + MLT1B LTR MaLR 334 390 0 204 97 0 0 chr13 7306566 7306597 -94566572 + (TG)n Simple_repeat Simple_repeat 2 32 0 2041 68 7 58 chr13 7306965 7307275 -94565894 + AluY SINE Alu 5 298 -13 317 324 14 0 chr13 7307704 7307825 -94565344 + L1ME LINE L1 321 445 -5625 435 248 101 0 chr13 7307872 7307981 -94565188 + L1ME LINE L1 2667 2786 -3294 717 248 85 30 chr13 7307983 7308314 -94564855 + L1MC4 LINE L1 7689 8037 -5 232 168 65 194 chr13 7308990 7309145 -94564024 + LTR67 LTR ERVL 46 180 -377 2755 176 53 4 chr13 7309338 7309865 -94563304 - L1MB5 LINE L1 -50 6124 5572 413 165 12 12 chr13 7309866 7309951 -94563218 + LTR67 LTR ERVL 471 555 -2 239 328 0 0 chr13 7309953 7310014 -94563155 - MIR SINE MIR -113 149 89 2623 52 3 3 chr13 7310433 7310743 -94562426 - AluY SINE Alu -1 310 1 3327 179 104 20 chr13 7312060 7312771 -94560398 - MER21A LTR ERV1 -160 771 1 287 257 29 0 chr13 7313628 7313698 -94559471 + GA-rich Low_complexity Low_complexity 2 73 0 21 0 0 0 chr13 7314497 7314518 -94558651 + AT_rich Low_complexity Low_complexity 1 21 0 4127 160 48 9 chr13 7314524 7315770 -94557399 - L1MA8 LINE L1 -274 6017 4723 312 221 26 13 chr13 7316258 7316335 -94556834 + MER116 DNA Mariner 3 80 0 321 249 86 96 chr13 7316629 7316761 -94556408 - L1MB5 LINE L1 -847 5299 5167 1966 142 3 7 chr13 7316761 7317057 -94556112 - AluJb SINE Alu -15 297 3 321 249 86 96 chr13 7317057 7317237 -94555932 - L1MB5 LINE L1 -979 5167 4990 2532 53 0 22 chr13 7317664 7317982 -94555187 - AluY SINE Alu 0 311 1 471 270 64 60 chr13 7318612 7318845 -94554324 + MIR SINE MIR 15 248 -14 847 156 0 8 chr13 7318997 7319125 -94554044 - FLAM_C SINE Alu -5 128 2 1791 163 3 29 chr13 7319230 7319536 -94553633 + AluJb SINE Alu 2 299 -13 1517 191 73 102 chr13 7319537 7319583 -94553586 - Charlie5 DNA MER1_type -1295 1329 1283 1666 172 10 10 chr13 7319583 7319886 -94553283 + AluJb SINE Alu 3 305 -7 1517 191 73 102 chr13 7319886 7320387 -94552782 - Charlie5 DNA MER1_type -1341 1283 798 800 205 0 13 chr13 7320387 7320538 -94552631 + Tigger2a DNA MER2_type 1 149 -285 366 47 0 0 chr13 7320534 7320577 -94552592 - Tigger2 DNA MER2_type -253 2465 2423 * 1575 150 71 11 chr13 7320630 7320910 -94552259 + Tigger2 DNA MER2_type 2422 2718 0 2979 198 85 9 chr13 7320919 7321247 -94551922 - Charlie5 DNA MER1_type -1834 790 488 1728 168 118 28 chr13 7321247 7321610 -94551559 + MSTD LTR MaLR 1 396 0 2979 198 85 9 chr13 7321610 7321974 -94551195 - Charlie5 DNA MER1_type -2136 488 45 2149 101 7 20 chr13 7322089 7322387 -94550782 + AluSg SINE Alu 1 294 -16 789 278 74 20 chr13 7322402 7322859 -94550310 - L1ME LINE L1 -578 5592 5119 2089 117 10 3 chr13 7322882 7323181 -94549988 + AluSg SINE Alu 1 301 -9 282 264 41 66 chr13 7375104 7375225 -94497944 - L2 LINE L2 -5 3267 3150 2179 56 4 4 chr13 7376460 7376727 -94496442 - AluY SINE Alu -6 305 39 1847 172 52 8 chr13 7376896 7377262 -94495907 - MLT1B LTR MaLR -8 382 1 1920 149 3 3 chr13 7378219 7378501 -94494668 - AluSx SINE Alu -30 282 1 824 136 8 0 chr13 7379800 7379932 -94493237 - FLAM_C SINE Alu 0 133 1 426 253 69 90 chr13 7380002 7380235 -94492934 + MLT1K LTR MaLR 357 584 -4 1761 174 0 19 chr13 7381200 7381517 -94491652 - AluJo SINE Alu -1 311 1 192 277 50 34 chr13 7381718 7381837 -94491332 - L2 LINE L2 -1834 1480 1360 521 244 60 30 chr13 7381899 7382067 -94491102 - MLT1K LTR MaLR -4 584 412 32 0 0 23 chr13 7383653 7383667 -94489502 + AT_rich Low_complexity Low_complexity 1 14 -28 2796 25 0 10 chr13 7383667 7383981 -94489188 - AluY SINE Alu 0 311 1 32 0 0 23 chr13 7383981 7384009 -94489160 + AT_rich Low_complexity Low_complexity 14 42 0 4091 171 21 39 chr13 7384203 7384957 -94488212 - MER21B LTR ERV1 -22 841 101 1504 116 5 5 chr13 7384974 7385189 -94487980 - AluSp SINE Alu -6 307 93 8830 156 18 39 chr13 7385300 7386060 -94487109 - L1 LINE L1 -769 5377 4603 2179 110 21 0 chr13 7386060 7386350 -94486819 - AluSx SINE Alu -16 296 1 8830 156 18 39 chr13 7386350 7387301 -94485868 - L1 LINE L1 -1543 4603 3701 787 170 0 99 chr13 7387402 7387614 -94485555 + L1MA4 LINE L1 6110 6300 0 2252 92 7 26 chr13 7388003 7388308 -94484861 + AluSc SINE Alu 1 299 -10 10655 190 12 12 chr13 7388309 7389768 -94483401 + L1PB1 LINE L1 2927 4385 -1766 216 0 0 0 chr13 7389768 7389792 -94483377 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10655 190 12 12 chr13 7389792 7391549 -94481620 + L1PB1 LINE L1 4385 6151 0 295 170 0 4 chr13 7391658 7391716 -94481453 - FLAM_A SINE Alu -81 51 9 284 280 100 13 chr13 7392056 7392206 -94480963 - L2 LINE L2 -40 3273 3111 183 261 109 11 chr13 7392526 7392618 -94480551 + MIR SINE MIR 92 192 -70 2142 104 0 4 chr13 7392756 7393077 -94480092 - AluSc SINE Alu 0 320 1 1374 146 5 5 chr13 7393107 7393319 -94479850 - AluSx SINE Alu -100 212 1 1154 189 129 63 chr13 7393550 7393836 -94479333 - AluJo SINE Alu 0 312 8 726 227 164 54 chr13 7395330 7395665 -94477504 - MER93b LTR ERV1 0 373 2 3468 179 48 8 chr13 7395701 7396354 -94476815 + LTR58 LTR ERV1 1 679 0 2317 78 0 0 chr13 7397345 7397621 -94475548 + AluY SINE Alu 16 292 -15 297 0 0 0 chr13 7397621 7397654 -94475515 + (CA)n Simple_repeat Simple_repeat 2 34 0 258 212 45 15 chr13 7398033 7398099 -94475070 - L2 LINE L2 0 3313 3246 2324 98 3 0 chr13 7398121 7398416 -94474753 + AluSq SINE Alu 3 298 -15 21 0 0 0 chr13 7398566 7398587 -94474582 + AT_rich Low_complexity Low_complexity 1 21 0 1321 226 129 12 chr13 7399643 7400045 -94473124 - LTR2 LTR ERV1 0 449 1 228 389 87 0 chr13 7400096 7400222 -94472947 - L2 LINE L2 0 3272 3136 2108 166 5 27 chr13 7401307 7401498 -94471671 - MLT1A1 LTR MaLR 0 365 184 2660 108 14 0 chr13 7401498 7401868 -94471301 + THE1C LTR MaLR 1 375 0 2108 166 5 27 chr13 7401868 7402049 -94471120 - MLT1A1 LTR MaLR -181 184 1 830 283 94 11 chr13 7402112 7402270 -94470899 + L2 LINE L2 2920 3063 -250 288 0 0 0 chr13 7402270 7402302 -94470867 + (CA)n Simple_repeat Simple_repeat 2 33 0 830 283 94 11 chr13 7402302 7402503 -94470666 + L2 LINE L2 3063 3309 -4 258 274 266 0 chr13 7403794 7403907 -94469262 + L2 LINE L2 3126 3268 -4 477 304 47 16 chr13 7404117 7404308 -94468861 + MIR SINE MIR 65 261 -1 488 230 0 7 chr13 7404636 7404788 -94468381 + (CA)n Simple_repeat Simple_repeat 2 152 0 568 135 0 10 chr13 7404790 7404886 -94468283 + FRAM SINE Alu 71 165 -11 363 309 47 7 chr13 7405442 7405591 -94467578 + MIR SINE MIR 65 219 -43 920 264 60 23 chr13 7405900 7406263 -94466906 - L1ME2 LINE L1 -6 6158 5785 322 143 16 16 chr13 7407078 7407141 -94466028 + AluS SINE Alu 1 63 -238 1870 153 13 3 chr13 7407447 7407754 -94465415 - AluJb SINE Alu -2 310 1 2007 102 56 30 chr13 7407791 7408094 -94465075 - AluY SINE Alu 0 311 1 210 351 18 9 chr13 7408467 7408578 -94464591 - L2 LINE L2 -213 3059 2948 228 67 0 0 chr13 7408860 7408890 -94464279 + (TG)n Simple_repeat Simple_repeat 2 31 0 195 184 0 0 chr13 7408890 7408928 -94464241 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 189 0 0 0 chr13 7408928 7408949 -94464220 + (GA)n Simple_repeat Simple_repeat 2 22 0 1549 190 0 32 chr13 7408952 7409236 -94463933 - AluJo SINE Alu -37 275 1 1145 264 105 87 chr13 7409714 7410408 -94462761 + MER21B LTR ERV1 8 714 -149 2484 100 73 36 chr13 7411982 7412393 -94460776 - MSTC LTR MaLR 0 428 3 282 242 74 21 chr13 7412429 7412524 -94460645 - LTR16A1 LTR ERVL -179 278 179 1205 144 24 5 chr13 7412872 7413080 -94460089 + LTR49 LTR ERV1 1 212 -383 2181 152 8 0 chr13 7413080 7413436 -94459733 + L1MA5A LINE L1 5899 6257 -40 183 139 0 0 chr13 7415434 7415470 -94457699 + (CTG)n Simple_repeat Simple_repeat 1 36 0 205 271 0 0 chr13 7416638 7416686 -94456483 - L2 LINE L2 -4 3268 3221 221 211 88 0 chr13 7416885 7416942 -94456227 - MIR SINE MIR -109 153 92 2762 242 49 73 chr13 7417404 7418823 -94454346 + L1M1 LINE L1 18 2332 -5233 870 184 0 0 chr13 7419157 7419298 -94453871 + FRAM SINE Alu 10 150 -26 387 0 0 0 chr13 7419325 7419368 -94453801 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr13 7419367 7419390 -94453779 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 305 264 107 8 chr13 7420407 7420528 -94452641 - MIR3 SINE MIR -18 190 58 813 145 34 101 chr13 7420645 7420852 -94452317 - MER34C LTR ERV1 -33 552 360 619 164 10 0 chr13 7422036 7422140 -94451029 + FLAM_C SINE Alu 1 105 -38 3354 137 29 18 chr13 7422140 7422688 -94450481 - MER41C LTR ERV1 0 554 1 275 189 0 19 chr13 7422695 7422748 -94450421 + MER34B LTR ERV1 514 565 0 2557 212 18 21 chr13 7423161 7423765 -94449404 + L1MB7 LINE L1 4448 5049 -1097 246 157 118 0 chr13 7423764 7423815 -94449354 - L1M4 LINE L1 -1021 5125 5069 * 2696 194 50 6 chr13 7423827 7424595 -94448574 + L1MB7 LINE L1 5069 5904 -280 * 5649 113 14 3 chr13 7424592 7425484 -94447685 + L1MA3 LINE L1 5186 6087 -218 2331 95 10 0 chr13 7426957 7427261 -94445908 - AluSg SINE Alu -3 307 1 200 216 21 31 chr13 7427483 7427580 -94445589 + (TA)n Simple_repeat Simple_repeat 2 97 0 3188 127 6 27 chr13 7428030 7428543 -94444626 - L1MC1 LINE L1 -457 5876 5375 1103 165 0 6 chr13 7428544 7428720 -94444449 - AluJo SINE Alu -137 175 1 348 318 85 31 chr13 7428884 7429013 -94444156 - L2 LINE L2 0 3272 3137 419 176 0 0 chr13 7430529 7430597 -94442572 - AluJ/FLAM SINE Alu -243 69 2 562 248 9 0 chr13 7430655 7430764 -94442405 - MER81 DNA DNA 0 114 5 1932 113 28 10 chr13 7431087 7431378 -94441791 + AluSx SINE Alu 1 296 -16 264 100 0 0 chr13 7431987 7432027 -94441142 + (A)n Simple_repeat Simple_repeat 1 40 0 554 197 171 0 chr13 7432437 7432589 -94440580 - MER45A DNA AcHobo 0 178 1 360 257 208 20 chr13 7434321 7434523 -94438646 + L2 LINE L2 2549 2788 -526 2202 118 7 0 chr13 7435164 7435469 -94437700 + AluSx SINE Alu 1 307 -5 2364 83 3 26 chr13 7435493 7435806 -94437363 + AluY SINE Alu 1 306 -5 501 62 0 0 chr13 7435808 7435873 -94437296 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 1812 172 0 17 chr13 7437358 7437654 -94435515 + AluJo SINE Alu 1 291 -21 290 297 88 88 chr13 7437768 7438064 -94435105 + L3 LINE CR1 514 809 -768 296 263 70 19 chr13 7438184 7438378 -94434791 + L3 LINE CR1 1022 1274 -303 905 265 70 42 chr13 7438437 7438959 -94434210 + MLT1H1 LTR MaLR 10 555 0 2046 158 0 0 chr13 7438982 7439292 -94433877 + AluSx SINE Alu 1 310 -2 606 235 82 6 chr13 7439320 7439490 -94433679 + MIR SINE MIR 64 246 -16 211 340 98 13 chr13 7439503 7439656 -94433513 + L3 LINE CR1 1317 1482 -95 613 268 137 38 chr13 7441737 7442084 -94431085 + MLT1J1 LTR MaLR 1 369 -77 1978 199 3 8 chr13 7442084 7442451 -94430718 + MLT1A1 LTR MaLR 1 365 0 613 268 137 38 chr13 7442451 7442533 -94430636 + MLT1J1 LTR MaLR 369 441 -5 1572 202 21 12 chr13 7443358 7443685 -94429484 + MER70A LTR ERVL 1 330 -142 1234 192 41 50 chr13 7445218 7445535 -94427634 + MLT1C LTR MaLR 1 314 -153 1755 167 17 7 chr13 7446651 7447042 -94426127 + AluSx SINE Alu 2 395 0 505 161 39 8 chr13 7447164 7447294 -94425875 + GA-rich Low_complexity Low_complexity 1 134 0 382 36 36 0 chr13 7447359 7447415 -94425754 + (ATG)n Simple_repeat Simple_repeat 3 60 0 297 89 0 0 chr13 7448450 7448495 -94424674 + (TG)n Simple_repeat Simple_repeat 2 46 0 225 224 37 19 chr13 7448989 7449096 -94424073 + (TA)n Simple_repeat Simple_repeat 2 110 0 204 128 0 26 chr13 7450777 7450816 -94422353 + (CGG)n Simple_repeat Simple_repeat 3 40 0 24 32 0 0 chr13 7451045 7451076 -94422093 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr13 7451422 7451444 -94421725 + GC_rich Low_complexity Low_complexity 1 22 0 200 188 0 0 chr13 7452873 7452905 -94420264 + polypyrimidine Low_complexity Low_complexity 1 32 0 201 39 0 0 chr13 7452910 7452936 -94420233 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 28 48 0 0 chr13 7455022 7455064 -94418105 + AT_rich Low_complexity Low_complexity 1 42 0 435 226 61 0 chr13 7457282 7457397 -94415772 - MIR SINE MIR 0 262 141 224 276 0 0 chr13 7457418 7457476 -94415693 + CT-rich Low_complexity Low_complexity 2 59 0 2650 166 6 32 chr13 7457876 7457922 -94415247 - L1MB1 LINE L1 0 6168 6122 2301 100 7 3 chr13 7457922 7458221 -94414948 - AluSx SINE Alu -10 302 3 2650 166 6 32 chr13 7458221 7458680 -94414489 - L1MB1 LINE L1 -46 6122 5676 2150 105 7 0 chr13 7459485 7459770 -94413399 - AluSx SINE Alu -25 287 1 2085 124 0 10 chr13 7460269 7460567 -94412602 - AluSx SINE Alu -17 295 1 2400 145 17 2 chr13 7460570 7460978 -94412191 - L1MB3 LINE L1 -45 6138 5725 911 302 114 16 chr13 7460975 7461459 -94411710 - L1MC4a LINE L1 -1982 5826 5296 * 1191 242 11 0 chr13 7461990 7462254 -94410915 + MLT1A1 LTR MaLR 2 268 -97 1712 139 14 75 chr13 7462254 7462622 -94410547 - MER4A LTR ERV1 0 664 261 597 89 89 0 chr13 7462622 7462712 -94410457 - MER4A LTR ERV1 -566 98 1 709 121 0 0 chr13 7462712 7462811 -94410358 + MLT1A1 LTR MaLR 265 363 -2 1067 197 19 57 chr13 7462912 7463201 -94409968 - L1P5 LINE L1 -430 5724 5441 21 36 0 0 chr13 7463842 7463870 -94409299 + AT_rich Low_complexity Low_complexity 1 28 0 2176 71 46 4 chr13 7463874 7464155 -94409014 - AluY SINE Alu -18 293 1 304 285 122 14 chr13 7464255 7464356 -94408813 + L1MC/D LINE L1 4076 4165 -1981 2035 214 13 5 chr13 7464356 7464749 -94408420 - MSTD LTR MaLR 0 396 1 304 285 122 14 chr13 7464749 7464868 -94408301 + L1MC/D LINE L1 4165 4320 -1826 2142 125 10 0 chr13 7464872 7465168 -94408001 + AluSx SINE Alu 1 299 -13 1860 287 95 34 chr13 7465275 7465809 -94407360 + L1M3c LINE L1 1046 1546 -4850 1939 170 0 0 chr13 7465809 7466098 -94407071 + AluJb SINE Alu 1 289 -23 1860 287 95 34 chr13 7466098 7466193 -94406976 + L1M3c LINE L1 1546 1634 -4762 2547 159 11 23 chr13 7466193 7466632 -94406537 - Tigger2a DNA MER2_type 0 434 1 1860 287 95 34 chr13 7466632 7467087 -94406082 + L1M3c LINE L1 1634 2060 -4336 2331 108 0 0 chr13 7467087 7467384 -94405785 - AluSx SINE Alu -15 297 1 1860 287 95 34 chr13 7467384 7467724 -94405445 + L1M3c LINE L1 2060 2519 -3877 5763 244 81 30 chr13 7467725 7468152 -94405017 + L1ME1 LINE L1 3100 3504 -2662 2262 90 0 50 chr13 7468152 7468473 -94404696 - AluSg SINE Alu -5 305 1 5763 244 81 30 chr13 7468473 7469545 -94403624 + L1ME1 LINE L1 3504 4519 -1647 2231 119 0 6 chr13 7469545 7469878 -94403291 + AluSg SINE Alu 1 310 0 5763 244 81 30 chr13 7469878 7471222 -94401947 + L1ME1 LINE L1 4519 6103 -63 2637 55 0 0 chr13 7471222 7471532 -94401637 - AluY SINE Alu -1 310 1 5763 244 81 30 chr13 7471532 7471600 -94401569 + L1ME1 LINE L1 6103 6166 0 750 292 97 39 chr13 7471688 7472174 -94400995 + LTR33 LTR ERVL 8 521 0 228 312 18 9 chr13 7472264 7472373 -94400796 + L1P LINE L1 4482 4591 -1555 247 286 98 31 chr13 7472547 7472771 -94400398 + L1MC/D LINE L1 4812 5050 -1096 1855 167 74 24 chr13 7472800 7473177 -94399992 - MSTD LTR MaLR 0 396 1 1136 195 80 58 chr13 7473200 7473513 -94399656 + MER2 DNA MER2_type 1 320 -25 1323 264 47 10 chr13 7473619 7474028 -94399141 + L1MC/D LINE L1 5270 5691 -747 362 245 64 107 chr13 7474645 7474878 -94398291 + MER65-int LTR ERV1 81 303 -4568 238 243 49 60 chr13 7475059 7475244 -94397925 - MER54A LTR ERVL -618 283 101 272 198 0 88 chr13 7475244 7475335 -94397834 + MER65-int LTR ERV1 656 738 -4133 1785 179 3 7 chr13 7476347 7476643 -94396526 + AluJo SINE Alu 1 295 -17 5134 112 11 3 chr13 7476756 7477509 -94395660 - L1PA13 LINE L1 0 6163 5405 1707 178 7 13 chr13 7478887 7479185 -94393984 + AluJo SINE Alu 1 296 -16 2153 102 0 7 chr13 7480329 7480638 -94392531 + AluSx SINE Alu 1 307 0 1125 168 0 5 chr13 7480649 7480839 -94392330 + L1PB4 LINE L1 5966 6154 -2 2143 100 42 0 chr13 7481230 7481519 -94391650 + AluSx SINE Alu 1 301 -11 6223 85 11 6 chr13 7482058 7482905 -94390264 - L1PA11 LINE L1 -1 6173 5323 1886 122 16 56 chr13 7483411 7483715 -94389454 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr13 7483715 7483736 -94389433 + AT_rich Low_complexity Low_complexity 1 21 0 2051 131 0 10 chr13 7484330 7484636 -94388533 + AluSx SINE Alu 1 303 -9 2443 85 7 3 chr13 7484892 7485199 -94387970 + AluSq SINE Alu 1 308 -5 189 107 0 0 chr13 7486511 7486539 -94386630 + (GGAGAA)n Simple_repeat Simple_repeat 3 30 0 45 0 0 0 chr13 7486918 7486963 -94386206 + AT_rich Low_complexity Low_complexity 1 45 0 1920 116 49 0 chr13 7486972 7487239 -94385930 + AluSx SINE Alu 1 280 -32 204 97 0 0 chr13 7487239 7487270 -94385899 + (CAAT)n Simple_repeat Simple_repeat 4 34 0 243 222 0 0 chr13 7487319 7487373 -94385796 + L2 LINE L2 3213 3266 -6 2533 132 89 22 chr13 7487980 7488428 -94384741 + LTR64 LTR ERVK 1 478 -80 927 118 0 29 chr13 7488451 7488587 -94384582 - FLAM_C SINE Alu -1 132 1 1841 171 0 0 chr13 7488628 7488914 -94384255 - AluJb SINE Alu -26 286 1 9122 161 72 14 chr13 7489099 7491561 -94381608 + L1PBa LINE L1 647 3345 -3517 442 241 61 30 chr13 7491749 7492002 -94381167 + MLT1L LTR MaLR 312 611 -4 801 261 31 52 chr13 7492765 7493152 -94380017 - L1MC5 LINE L1 -36 7925 7547 1325 219 28 100 chr13 7493204 7493390 -94379779 - L1MC5 LINE L1 -729 7232 7034 1974 110 7 0 chr13 7493390 7493703 -94379466 + AluSx SINE Alu 1 315 0 1325 219 28 100 chr13 7493703 7494095 -94379074 - L1MC5 LINE L1 -927 7034 6695 410 275 53 8 chr13 7494235 7494366 -94378803 + MIR SINE MIR 67 203 -59 23 0 0 0 chr13 7495213 7495236 -94377933 + AT_rich Low_complexity Low_complexity 1 23 0 233 100 0 0 chr13 7495574 7495604 -94377565 - MLT2D LTR ERVL -5 510 481 1565 158 0 19 chr13 7495674 7495934 -94377235 + AluJb SINE Alu 1 255 -57 341 170 0 0 chr13 7495937 7495990 -94377179 + AluJb SINE Alu 234 286 -16 1711 148 98 0 chr13 7496012 7496330 -94376839 - MLT2D LTR ERVL -65 349 1 1748 149 10 7 chr13 7496764 7497066 -94376103 + L1MC1 LINE L1 6030 6332 -1 22 0 0 0 chr13 7497106 7497128 -94376041 + AT_rich Low_complexity Low_complexity 1 22 0 2052 111 13 10 chr13 7497758 7498065 -94375104 - AluSx SINE Alu -4 308 1 517 253 141 72 chr13 7498620 7499131 -94374038 - MLT1H LTR MaLR 0 595 1 1339 153 48 34 chr13 7499410 7499704 -94373465 + L1MB7 LINE L1 5887 6184 0 520 243 181 35 chr13 7500263 7500489 -94372680 + MLT1L LTR MaLR 8 266 -349 2349 253 40 43 chr13 7500974 7501657 -94371512 - L1ME3 LINE L1 -41 6121 5441 2136 122 3 0 chr13 7501657 7501968 -94371201 - AluSx SINE Alu 0 312 1 2349 253 40 43 chr13 7501968 7502462 -94370707 - L1ME3 LINE L1 -721 5441 4947 1355 239 46 46 chr13 7502488 7502687 -94370482 - L1ME3 LINE L1 -1279 4867 4669 2218 110 0 0 chr13 7502687 7502997 -94370172 - AluSx SINE Alu -2 310 1 1355 239 46 46 chr13 7502997 7503295 -94369874 - L1ME3 LINE L1 -1476 4670 4370 1696 225 75 58 chr13 7503336 7503445 -94369724 - L1ME1 LINE L1 -5 6161 6055 1759 111 12 0 chr13 7503445 7503713 -94369456 + AluSx SINE Alu 38 308 0 1696 225 75 58 chr13 7503713 7504188 -94368981 - L1ME1 LINE L1 -111 6055 5566 237 303 17 17 chr13 7504193 7504312 -94368857 - L1ME3 LINE L1 -1755 4391 4273 700 240 98 62 chr13 7504554 7504891 -94368278 - MLT1L LTR MaLR -266 349 1 1256 162 81 0 chr13 7506957 7507191 -94365978 + AluSg SINE Alu 1 253 -57 363 132 0 0 chr13 7507746 7507814 -94365355 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1562 168 81 0 chr13 7507831 7508116 -94365053 - AluJo SINE Alu -4 308 1 2158 100 0 0 chr13 7508575 7508864 -94364305 - AluSg SINE Alu -16 294 6 2079 74 14 18 chr13 7509754 7510039 -94363130 + AluY SINE Alu 1 284 -27 391 165 70 52 chr13 7510141 7510256 -94362913 + L1PA16 LINE L1 6050 6166 0 2513 43 0 0 chr13 7510550 7510851 -94362318 - AluY SINE Alu -10 301 1 2312 92 0 0 chr13 7511042 7511346 -94361823 - AluSq SINE Alu -9 304 1 235 397 7 0 chr13 7511395 7511531 -94361638 - L2 LINE L2 -946 2368 2232 844 257 141 27 chr13 7511547 7511959 -94361210 - MLT1C LTR MaLR -8 459 1 270 56 0 0 chr13 7512702 7512738 -94360431 + (TA)n Simple_repeat Simple_repeat 2 37 0 270 360 0 0 chr13 7514952 7515041 -94358128 + MER5A DNA MER1_type 18 106 -83 852 220 47 19 chr13 7515336 7515550 -94357619 - MIR SINE MIR 0 262 43 1206 164 136 82 chr13 7515633 7515933 -94357236 + MSTD LTR MaLR 1 320 -76 1886 190 64 11 chr13 7515933 7516307 -94356862 - MSTD LTR MaLR 0 396 3 1206 164 136 82 chr13 7516307 7516323 -94356846 + MSTD LTR MaLR 320 334 -62 290 57 0 0 chr13 7516323 7516388 -94356781 + Alu SINE Alu 247 304 0 25 31 0 0 chr13 7516388 7516420 -94356749 + AT_rich Low_complexity Low_complexity 1 32 0 283 267 91 3 chr13 7516587 7516691 -94356478 + Charlie8 DNA MER1_type 2 79 -2338 186 322 17 43 chr13 7516793 7516853 -94356316 + L2 LINE L2 3123 3180 -92 2240 104 3 0 chr13 7516853 7517162 -94356007 + AluSp SINE Alu 1 310 -3 186 322 17 43 chr13 7517162 7517216 -94355953 + L2 LINE L2 3180 3234 -38 700 282 25 0 chr13 7518116 7518279 -94354890 + MIR SINE MIR 47 213 -49 1960 149 0 0 chr13 7519692 7520000 -94353169 + AluSx SINE Alu 1 308 -4 1455 167 0 4 chr13 7520202 7520453 -94352716 - AluSx SINE Alu -13 299 50 211 196 0 39 chr13 7520824 7520875 -94352294 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 220 347 0 13 chr13 7520902 7520977 -94352192 + L2 LINE L2 3163 3236 -36 2189 106 0 3 chr13 7521001 7521304 -94351865 - AluSx SINE Alu -10 302 1 261 0 0 0 chr13 7521353 7521382 -94351787 + (CA)n Simple_repeat Simple_repeat 2 30 0 2305 58 3 0 chr13 7522108 7522399 -94350770 + AluY SINE Alu 20 311 0 565 231 37 15 chr13 7522666 7522800 -94350369 + MIR SINE MIR 49 185 -77 389 273 116 8 chr13 7523824 7523945 -94349224 + MIR SINE MIR 50 183 -79 382 216 27 99 chr13 7524191 7524302 -94348867 + MER20 DNA MER1_type 1 103 -116 218 274 68 27 chr13 7525208 7525281 -94347888 + MIR SINE MIR 127 202 -60 1972 103 0 62 chr13 7525309 7525630 -94347539 + AluSx SINE Alu 1 301 -11 298 350 13 38 chr13 7526068 7526225 -94346944 + MIR SINE MIR 50 202 -60 197 307 71 24 chr13 7526327 7526454 -94346715 + MIR SINE MIR 60 192 -70 972 165 6 6 chr13 7526644 7526820 -94346349 - FRAM SINE Alu 0 176 1 689 137 24 8 chr13 7528453 7528577 -94344592 + MER31B LTR ERV1 1 126 -340 * 718 133 147 7 chr13 7528554 7528704 -94344465 + MER31B LTR ERV1 243 413 -53 1970 153 80 28 chr13 7528714 7529098 -94344071 + MSTB1 LTR MaLR 7 410 -22 1680 95 4 9 chr13 7529098 7529329 -94343840 - MER30 DNA MER1_type 0 230 1 320 155 28 14 chr13 7529361 7529432 -94343737 + MER31B LTR ERV1 395 466 0 466 235 120 54 chr13 7529440 7529933 -94343236 - MLT1H1 LTR MaLR -29 566 4 1844 117 32 14 chr13 7529987 7530290 -94342879 + AluSx SINE Alu 5 312 0 510 198 18 0 chr13 7530392 7530503 -94342666 + L1MD3 LINE L1 6919 7031 -964 944 162 65 142 chr13 7530615 7530967 -94342202 + MER51C LTR ERV1 326 640 0 299 235 0 0 chr13 7530980 7531048 -94342121 + L1MC3 LINE L1 7029 7096 -689 325 265 31 10 chr13 7531049 7531147 -94342022 + MLT1F1 LTR MaLR 35 134 -433 2463 147 46 31 chr13 7531150 7531559 -94341610 + L1MC3 LINE L1 7205 7623 -162 2463 63 0 0 chr13 7531559 7531861 -94341308 + AluY SINE Alu 1 302 -9 2463 147 46 31 chr13 7531861 7531906 -94341263 + L1MC3 LINE L1 7623 7666 -119 1359 189 71 53 chr13 7531930 7532135 -94341034 - MER2 DNA MER2_type 0 344 129 1965 125 0 10 chr13 7532135 7532440 -94340729 + AluSx SINE Alu 11 312 0 1359 189 71 53 chr13 7532440 7532572 -94340597 - MER2 DNA MER2_type -215 129 1 219 146 0 0 chr13 7582829 7582870 -94290299 + (TA)n Simple_repeat Simple_repeat 1 41 0 1843 139 17 24 chr13 7582873 7583168 -94290001 - AluSc SINE Alu -16 293 1 379 287 72 34 chr13 7583181 7583418 -94289751 - L1M4 LINE L1 -2130 4016 3771 638 279 54 38 chr13 7583447 7583874 -94289295 - L1M4 LINE L1 -2899 3247 2814 304 258 112 0 chr13 7584317 7584406 -94288763 - L1M4 LINE L1 -3319 2827 2729 2244 124 0 0 chr13 7584407 7584714 -94288455 - AluSx SINE Alu -5 307 1 1208 194 41 32 chr13 7584714 7585059 -94288110 - L1M4 LINE L1 -1100 5046 4699 1040 241 119 17 chr13 7585190 7585534 -94287635 + MLT1G1 LTR MaLR 3 381 -214 2480 85 0 3 chr13 7585766 7586072 -94287097 + AluSc SINE Alu 1 305 -4 1872 176 0 0 chr13 7586372 7586661 -94286508 + AluJb SINE Alu 4 292 -20 499 314 54 46 chr13 7586737 7586998 -94286171 + L3b LINE CR1 1190 1452 -131 188 167 0 24 chr13 7587149 7587191 -94285978 + L2 LINE L2 1698 1738 -1576 195 42 0 0 chr13 7588449 7588473 -94284696 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 714 116 0 0 chr13 7588477 7588572 -94284597 - AluSg/x SINE Alu -35 277 183 2460 87 6 0 chr13 7589012 7589323 -94283846 + AluSq SINE Alu 1 313 0 185 262 0 0 chr13 7589645 7589687 -94283482 + MIR SINE MIR 85 126 -136 513 136 0 0 chr13 7589698 7589801 -94283368 + (TG)n Simple_repeat Simple_repeat 1 103 0 25 75 0 0 chr13 7590290 7590343 -94282826 + GC_rich Low_complexity Low_complexity 1 53 0 219 175 0 35 chr13 7590631 7590688 -94282481 + (CGGGG)n Simple_repeat Simple_repeat 4 58 0 339 203 0 0 chr13 7591199 7591273 -94281896 + (CA)n Simple_repeat Simple_repeat 2 75 0 989 284 95 14 chr13 7591762 7592205 -94280964 - L2 LINE L2 -612 2702 2224 636 190 41 24 chr13 7592205 7592376 -94280793 + MER45A DNA AcHobo 1 174 -4 1110 242 85 20 chr13 7592400 7592835 -94280334 - L2 LINE L2 -1154 2160 1700 309 262 83 14 chr13 7592848 7593057 -94280112 - L2 LINE L2 -2761 553 240 355 230 110 10 chr13 7593541 7593641 -94279528 - L2 LINE L2 -13 3300 3191 222 273 0 0 chr13 7593877 7593954 -94279215 + (TTTA)n Simple_repeat Simple_repeat 3 79 0 1329 91 6 6 chr13 7594184 7594360 -94278809 - AluSc SINE Alu -124 185 10 253 295 103 0 chr13 7594555 7594633 -94278536 - MIR3 SINE MIR -15 193 108 1754 161 33 4 chr13 7596016 7596325 -94276844 + AluSx SINE Alu 1 317 0 1921 143 20 7 chr13 7596335 7596629 -94276540 + AluJo SINE Alu 1 298 -14 217 235 39 0 chr13 7598576 7598627 -94274542 - L2 LINE L2 -680 2634 2582 1240 197 55 3 chr13 7598883 7599173 -94273996 + MER33 DNA MER1_type 11 315 -9 211 272 80 74 chr13 7599218 7599380 -94273789 - MIR3 SINE MIR -11 197 35 4769 132 13 9 chr13 7600497 7601250 -94271919 - L1MC1 LINE L1 -246 6087 5332 2534 73 0 0 chr13 7601250 7601553 -94271616 - AluY SINE Alu -8 303 1 1770 88 0 0 chr13 7601553 7601770 -94271399 - AluSc SINE Alu -20 289 73 978 69 0 0 chr13 7601772 7601888 -94271281 - AluSc SINE Alu -180 129 14 983 204 13 34 chr13 7601889 7602124 -94271045 - L1MC1 LINE L1 -816 5330 5101 248 269 78 91 chr13 7602494 7603306 -94269863 - L1MDa LINE L1 -856 2045 1285 541 304 57 0 chr13 7603802 7603996 -94269173 + MIR SINE MIR 37 241 -21 24 77 0 0 chr13 7604004 7604056 -94269113 + AT_rich Low_complexity Low_complexity 1 52 0 1290 178 5 5 chr13 7604192 7604405 -94268764 - AluJb SINE Alu -13 299 87 2136 104 10 13 chr13 7604415 7604714 -94268455 - AluSx SINE Alu -14 298 1 2307 57 0 4 chr13 7605213 7605523 -94267646 + AluY SINE Alu 1 309 0 2229 115 3 0 chr13 7606280 7606575 -94266594 + AluSx SINE Alu 1 296 -16 313 134 15 15 chr13 7606662 7606729 -94266440 + GA-rich Low_complexity Low_complexity 3 69 0 1947 191 70 27 chr13 7606817 7607257 -94265912 - LTR2B LTR ERV1 0 490 32 186 333 14 92 chr13 7608164 7608305 -94264864 - L2 LINE L2 -10 3262 3133 2112 117 3 10 chr13 7608473 7608792 -94264377 - AluSx SINE Alu 0 312 1 1516 189 42 95 chr13 7608820 7609146 -94264023 - L1ME1 LINE L1 -6 6160 5861 2280 102 17 0 chr13 7609146 7609439 -94263730 + AluSx SINE Alu 1 298 -14 1516 189 42 95 chr13 7609439 7609545 -94263624 - L1ME1 LINE L1 -305 5861 5751 200 200 18 0 chr13 7609826 7609881 -94263288 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 197 305 86 47 chr13 7609895 7610023 -94263146 - L2 LINE L2 -2 3270 3138 3428 121 74 3 chr13 7610723 7611293 -94261876 + LTR24C LTR ERV1 1 610 -25 830 184 0 0 chr13 7611293 7611434 -94261735 + FLAM_A SINE Alu 1 141 -1 311 53 0 0 chr13 7611436 7611474 -94261695 + LTR24C LTR ERV1 598 635 0 1545 167 108 7 chr13 7611632 7611901 -94261268 - AluJo SINE Alu -16 296 1 2378 106 0 0 chr13 7611912 7612214 -94260955 - AluSx SINE Alu -10 302 1 207 185 19 37 chr13 7612899 7612953 -94260216 + A-rich Low_complexity Low_complexity 4 56 0 1091 196 47 120 chr13 7613113 7613688 -94259481 + MER34B LTR ERV1 1 521 -21 3980 124 38 11 chr13 7613872 7614092 -94259077 - MER39B LTR ERV1 0 653 440 1468 189 0 4 chr13 7614092 7614335 -94258834 - AluJo SINE Alu -70 242 1 2207 114 7 0 chr13 7614342 7614640 -94258529 - AluSc SINE Alu -9 300 1 3980 124 38 11 chr13 7614640 7615046 -94258123 - MER39B LTR ERV1 -218 435 2 849 192 33 33 chr13 7615329 7615511 -94257658 - MER70A LTR ERVL -16 456 275 976 178 31 21 chr13 7615557 7615748 -94257421 - MER70B LTR ERVL -385 193 1 6007 118 16 3 chr13 7616112 7617004 -94256165 - MER4D LTR ERV1 0 903 1 198 256 178 11 chr13 7617054 7617144 -94256025 + L2 LINE L2 3206 3310 -3 896 199 21 31 chr13 7617669 7617860 -94255309 - MER5A DNA MER1_type 0 189 1 2759 19 0 13 chr13 7617890 7618200 -94254969 - AluYa5 SINE Alu -5 306 1 741 202 0 11 chr13 7618205 7618469 -94254700 + CT-rich Low_complexity Low_complexity 1 261 0 1446 155 4 13 chr13 7618482 7618721 -94254448 - AluJo SINE Alu -73 239 3 1150 132 20 0 chr13 7618870 7619067 -94254102 - L1MA4A LINE L1 0 6303 6103 1413 142 18 0 chr13 7620150 7620369 -94252800 - MER44D DNA MER2_type -14 591 314 808 209 14 0 chr13 7620369 7620517 -94252652 - FRAM SINE Alu -26 150 1 1822 189 12 16 chr13 7620518 7620840 -94252329 - MER44D DNA MER2_type -377 328 8 1355 214 16 43 chr13 7621162 7621281 -94251888 + MLT1A1 LTR MaLR 53 174 -191 1719 207 8 40 chr13 7621281 7621658 -94251511 - MLT1A1 LTR MaLR 0 365 1 1355 214 16 43 chr13 7621658 7621860 -94251309 + MLT1A1 LTR MaLR 174 365 0 530 367 96 0 chr13 7622472 7622712 -94250457 - L2 LINE L2 0 3272 3010 375 313 151 20 chr13 7623040 7623771 -94249398 - L2 LINE L2 -731 2583 1758 261 83 0 0 chr13 7624450 7624486 -94248683 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2215 156 85 16 chr13 7624584 7625007 -94248162 - LTR47A LTR ERVL 0 452 1 213 200 21 116 chr13 7625045 7625140 -94248029 - L2 LINE L2 -181 3091 3006 1303 62 0 0 chr13 7626416 7626577 -94246592 + L1PA8 LINE L1 5998 6158 -14 2228 96 3 3 chr13 7626611 7626902 -94246267 + AluSc SINE Alu 1 291 -18 180 200 0 0 chr13 7628440 7628485 -94244684 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 1148 129 0 0 chr13 7628512 7628667 -94244502 - AluSq SINE Alu -158 155 1 700 211 45 35 chr13 7628667 7628866 -94244303 - L1M4 LINE L1 -1100 5046 4846 1713 229 98 25 chr13 7631560 7632080 -94241089 + MER74A LTR ERVL 1 558 0 1622 158 44 11 chr13 7632345 7632618 -94240551 + AluJb SINE Alu 11 292 -20 190 286 66 33 chr13 7633673 7633764 -94239405 - MIR SINE MIR -119 143 50 370 250 318 5 chr13 7634310 7634502 -94238667 + MIR SINE MIR 8 259 -3 2101 79 3 38 chr13 7635226 7635541 -94237628 - AluY SINE Alu 0 305 1 1623 172 0 29 chr13 7637453 7637761 -94235408 + AluJo SINE Alu 9 307 -5 194 354 25 0 chr13 7640486 7640565 -94232604 - MIR3 SINE MIR -9 199 119 363 270 40 62 chr13 7640700 7640856 -94232313 - MER97c DNA MER1_type? -3 1087 936 2184 123 3 0 chr13 7640856 7641156 -94232013 + AluSx SINE Alu 1 301 -11 363 270 40 62 chr13 7641156 7641225 -94231944 - MER97c DNA MER1_type? -154 936 867 1216 209 120 9 chr13 7641335 7641684 -94231485 - MER97b DNA MER1_type? -194 859 472 759 176 7 7 chr13 7641685 7641821 -94231348 + AluJo SINE Alu 2 137 -175 491 279 54 44 chr13 7641835 7642039 -94231130 - MER97b DNA MER1_type? -574 479 274 1081 222 79 29 chr13 7642180 7642492 -94230677 + AluJo SINE Alu 14 312 0 395 216 237 0 chr13 7642561 7642658 -94230511 - MER97b DNA MER1_type? -907 146 27 244 233 55 27 chr13 7642684 7642757 -94230412 + MIR SINE MIR 73 147 -115 1498 152 144 0 chr13 7644494 7644750 -94228419 - AluSx SINE Alu -17 295 3 1292 174 20 4 chr13 7644807 7645054 -94228115 + L1MB2 LINE L1 5921 6171 0 236 353 58 13 chr13 7645134 7645290 -94227879 - MIR SINE MIR -44 218 56 198 103 0 0 chr13 7645352 7645381 -94227788 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 263 299 62 0 chr13 7645664 7645761 -94227408 - MIR SINE MIR -9 253 151 1821 151 3 14 chr13 7646236 7646528 -94226641 - AluJb SINE Alu -23 289 1 2067 122 7 7 chr13 7648395 7648690 -94224479 + AluSx SINE Alu 2 296 -16 198 0 0 0 chr13 7648694 7648716 -94224453 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 877 157 8 0 chr13 7649456 7649590 -94223579 - AluJo SINE Alu -175 137 3 2238 114 16 50 chr13 7650242 7650619 -94222550 - THE1B LTR MaLR 0 364 1 189 262 8 71 chr13 7650650 7650776 -94222393 + L2 LINE L2 2905 3022 -250 295 268 143 0 chr13 7651050 7651162 -94222007 + Charlie7 DNA MER1_type 56 183 -2429 1487 154 41 110 chr13 7651205 7651595 -94221574 + MLT1A2 LTR MaLR 1 363 -11 421 278 42 0 chr13 7651602 7651746 -94221423 + Charlie7 DNA MER1_type 254 403 -2209 291 297 79 7 chr13 7651755 7651933 -94221236 - MLT1J LTR MaLR -241 270 43 7411 58 8 38 chr13 7652009 7653718 -94219451 + SVA Other Other 1 1383 -3 713 266 35 31 chr13 7653719 7654008 -94219161 + Charlie7 DNA MER1_type 400 689 -1923 277 174 64 92 chr13 7654002 7654065 -94219104 + Charlie7 DNA MER1_type 2507 2567 -45 * 2182 93 21 3 chr13 7654065 7654355 -94218814 + AluSc SINE Alu 1 295 -14 277 174 64 92 chr13 7654355 7654400 -94218769 + Charlie7 DNA MER1_type 2567 2612 0 2318 101 0 0 chr13 7655260 7655556 -94217613 - AluSq SINE Alu -17 296 1 1183 210 47 5 chr13 7655559 7655855 -94217314 - L1MD3 LINE L1 -15 7967 7481 2021 130 0 13 chr13 7656622 7656921 -94216248 + AluSx SINE Alu 2 296 -16 5712 116 9 33 chr13 7657181 7658075 -94215094 + L1PA14 LINE L1 5144 6012 -149 1978 97 38 56 chr13 7658075 7658363 -94214806 + AluSx SINE Alu 1 283 -29 5712 116 9 33 chr13 7658363 7658510 -94214659 + L1PA14 LINE L1 6012 6161 0 2528 75 0 3 chr13 7658624 7658931 -94214238 - AluY SINE Alu -5 306 1 21 36 0 0 chr13 7659355 7659383 -94213786 + AT_rich Low_complexity Low_complexity 1 28 0 1088 205 31 5 chr13 7659444 7659668 -94213501 + L1MB8 LINE L1 5910 6139 -39 26 64 0 0 chr13 7660576 7660623 -94212546 + AT_rich Low_complexity Low_complexity 1 47 0 2268 123 0 0 chr13 7660799 7661100 -94212069 - AluSx SINE Alu -11 301 1 2153 107 28 0 chr13 7661569 7661858 -94211311 + AluSx SINE Alu 1 297 -15 3349 151 53 67 chr13 7662137 7662839 -94210330 - L1MB7 LINE L1 -60 6124 5433 365 323 0 0 chr13 7663384 7663483 -94209686 + MIR SINE MIR 37 135 -127 26 30 0 0 chr13 7664302 7664335 -94208834 + GC_rich Low_complexity Low_complexity 1 33 0 201 108 0 0 chr13 7664418 7664455 -94208714 + (CCCCCG)n Simple_repeat Simple_repeat 3 39 0 2352 48 10 3 chr13 7665361 7665655 -94207514 + AluY SINE Alu 1 296 -15 841 125 0 8 chr13 7667287 7667407 -94205762 + FLAM_C SINE Alu 1 119 -24 956 79 0 14 chr13 7667408 7667548 -94205621 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 295 243 54 72 chr13 7668294 7668405 -94204764 + L2 LINE L2 3205 3313 0 189 0 0 0 chr13 7668744 7668765 -94204404 + (T)n Simple_repeat Simple_repeat 1 21 0 23 68 0 0 chr13 7669762 7669806 -94203363 + AT_rich Low_complexity Low_complexity 1 44 0 1218 262 85 101 chr13 7670290 7671011 -94202158 + MER21B LTR ERV1 6 714 -149 224 232 36 0 chr13 7671165 7671221 -94201948 + MIR SINE MIR 85 142 -66 451 213 21 0 chr13 7671240 7671334 -94201835 - MER58C DNA MER1_type 0 215 120 309 151 0 0 chr13 7671334 7671387 -94201782 + CT-rich Low_complexity Low_complexity 4 56 0 2160 114 4 0 chr13 7672980 7673294 -94199875 - AluSx SINE Alu 0 315 1 564 309 127 16 chr13 7673372 7673812 -94199357 + L2 LINE L2 2825 3313 0 637 188 8 16 chr13 7674700 7674828 -94198341 + FLAM_A SINE Alu 1 127 -6 369 299 7 28 chr13 7675615 7675759 -94197410 - MIR SINE MIR -41 221 81 1616 114 9 0 chr13 7676111 7676339 -94196830 - MER30 DNA MER1_type 0 230 1 2442 80 0 0 chr13 7678271 7678572 -94194597 - AluSg SINE Alu -9 301 1 427 337 10 15 chr13 7678648 7678847 -94194322 + LTR16B LTR ERVL 258 455 -9 2119 98 4 4 chr13 7679816 7680090 -94193079 + AluSq SINE Alu 29 302 -11 575 148 20 10 chr13 7680106 7680207 -94192962 - AluSg/x SINE Alu -16 293 192 183 208 42 21 chr13 7681190 7681238 -94191931 + L2 LINE L2 3261 3309 -4 474 18 0 0 chr13 7682021 7682076 -94191093 + (TG)n Simple_repeat Simple_repeat 2 56 0 2092 137 0 3 chr13 7682077 7682369 -94190800 - AluSx SINE Alu -21 291 1 5788 101 7 4 chr13 7683135 7684150 -94189019 - L1PA16 LINE L1 -2 6164 5128 219 288 178 8 chr13 7684211 7684329 -94188840 - MIR SINE MIR -70 192 55 2158 105 17 10 chr13 7685417 7685711 -94187458 - AluSq SINE Alu -17 296 1 23 0 0 0 chr13 7686324 7686347 -94186822 + AT_rich Low_complexity Low_complexity 1 23 0 2214 131 3 0 chr13 7686760 7687065 -94186104 + AluSx SINE Alu 1 306 -6 1701 178 11 3 chr13 7687351 7687637 -94185532 - AluJo SINE Alu -24 288 1 269 278 65 65 chr13 7687735 7687904 -94185265 - HAL1 LINE L1 -23 2484 2316 2337 105 0 3 chr13 7687927 7688233 -94184936 + AluSx SINE Alu 1 305 -7 23 0 0 0 chr13 7688447 7688470 -94184699 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr13 7690526 7690551 -94182618 + (TC)n Simple_repeat Simple_repeat 2 26 0 2130 108 11 14 chr13 7690551 7690838 -94182331 - AluSx SINE Alu -26 286 1 451 259 40 65 chr13 7691490 7691811 -94181358 - HAL1 LINE L1 -1351 1156 844 785 235 108 110 chr13 7692292 7692738 -94180431 + MLT2B2 LTR ERVL 1 445 -19 252 250 44 0 chr13 7693228 7693296 -94179873 + L1ME3A LINE L1 6072 6142 -28 2292 120 0 0 chr13 7694166 7694475 -94178694 - AluSx SINE Alu -3 309 1 26 0 0 0 chr13 7694477 7694503 -94178666 + AT_rich Low_complexity Low_complexity 1 26 0 743 151 0 0 chr13 7694514 7694620 -94178549 + U6 snRNA snRNA 2 107 0 837 317 31 54 chr13 7696310 7696909 -94176260 + L2 LINE L2 2711 3302 -11 1225 218 116 32 chr13 7697302 7697646 -94175523 - L1MA6 LINE L1 -4 6296 5924 434 314 118 14 chr13 7698139 7698415 -94174754 + L1ME LINE L1 5298 5600 -570 383 136 30 0 chr13 7698427 7698493 -94174676 + L1MC3 LINE L1 7552 7619 -166 418 272 49 33 chr13 7698503 7698704 -94174465 + L1ME LINE L1 5605 5824 -297 825 267 88 18 chr13 7699153 7699438 -94173731 + MER69 DNA AcHobo 244 548 -1978 1199 216 101 23 chr13 7699448 7699884 -94173285 + MER69 DNA AcHobo 2022 2491 -35 423 0 0 0 chr13 7700385 7700432 -94172737 + (CA)n Simple_repeat Simple_repeat 2 48 0 426 214 46 64 chr13 7701084 7701257 -94171912 - HAL1 LINE L1 -8 2499 2330 21 0 0 0 chr13 7701504 7701525 -94171644 + AT_rich Low_complexity Low_complexity 1 21 0 228 284 12 49 chr13 7701704 7701785 -94171384 - HAL1 LINE L1 -767 1740 1663 401 290 248 29 chr13 7701794 7702101 -94171068 - HAL1 LINE L1 -898 1609 1236 6288 55 46 45 chr13 7702101 7703219 -94169950 - SVA Other Other -551 1380 433 11929 157 51 108 chr13 7703340 7703507 -94169662 - L1 LINE L1 -1162 5166 4991 482 184 69 0 chr13 7703507 7703594 -94169575 - FLAM SINE Alu -12 131 39 11929 157 51 108 chr13 7703594 7704635 -94168534 - L1 LINE L1 -1337 4991 3892 1934 146 24 3 chr13 7704635 7704930 -94168239 + AluSx SINE Alu 1 301 -11 11929 157 51 108 chr13 7704930 7705066 -94168103 - L1 LINE L1 -2436 3892 3750 875 175 18 24 chr13 7705066 7705232 -94167937 - AluJb SINE Alu -13 299 135 11929 157 51 108 chr13 7705232 7707074 -94166095 - L1 LINE L1 -2578 3750 1940 7621 192 20 6 chr13 7707240 7709188 -94163981 - L1 LINE L1 -4065 1263 1 651 160 194 0 chr13 7709277 7709427 -94163742 + MER5A DNA MER1_type 4 187 -2 646 51 0 0 chr13 7710659 7710737 -94162432 - L1PA5 LINE L1 -1 6153 6076 212 373 36 0 chr13 7710743 7710853 -94162316 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 1769 105 34 4 chr13 7710866 7711137 -94162032 - L1PA5 LINE L1 -34 6120 5841 1983 146 104 3 chr13 7713242 7713570 -94159599 + MER46B DNA MER2_type 1 236 0 1988 156 3 3 chr13 7714300 7714608 -94158561 - AluJb SINE Alu -4 308 1 203 293 120 23 chr13 7716333 7716466 -94156703 - L2 LINE L2 -26 3246 3101 * 708 235 16 22 chr13 7716403 7716586 -94156583 - MER5A DNA MER1_type -7 182 1 2059 133 13 3 chr13 7717156 7717465 -94155704 + AluJb SINE Alu 1 312 0 297 327 84 40 chr13 7717606 7717758 -94155411 - L2 LINE L2 -194 3078 2909 537 216 251 6 chr13 7717758 7717925 -94155244 + MER3 DNA MER1_type 1 208 -1 297 327 84 40 chr13 7717925 7718023 -94155146 - L2 LINE L2 -363 2909 2817 1909 115 4 18 chr13 7718134 7718412 -94154757 - AluSx SINE Alu -38 274 1 323 320 22 43 chr13 7718863 7719064 -94154105 - MIR SINE MIR -60 202 4 342 308 83 8 chr13 7719310 7719430 -94153739 + MIR SINE MIR 21 149 -113 694 279 25 15 chr13 7719450 7719654 -94153515 - MIR SINE MIR -56 206 1 360 0 0 0 chr13 7721057 7721097 -94152072 + (TG)n Simple_repeat Simple_repeat 2 41 0 1718 138 19 70 chr13 7721097 7721409 -94151760 - AluJo SINE Alu -16 296 1 341 296 179 25 chr13 7721489 7721651 -94151518 - MIR SINE MIR -19 243 57 2172 129 0 10 chr13 7722852 7723161 -94150008 - AluSx SINE Alu -6 306 1 1338 159 0 10 chr13 7723322 7723530 -94149639 + AluJo SINE Alu 86 291 -21 21 36 0 0 chr13 7724909 7724937 -94148232 + AT_rich Low_complexity Low_complexity 1 28 0 222 327 159 0 chr13 7726094 7726207 -94146962 - L2 LINE L2 0 3272 3142 250 333 116 21 chr13 7726490 7726914 -94146255 - L2 LINE L2 -2333 981 518 565 167 11 0 chr13 7727424 7727514 -94145655 + FLAM_A SINE Alu 36 126 -16 2101 135 3 0 chr13 7727626 7727930 -94145239 - AluJb SINE Alu -7 305 1 497 241 103 69 chr13 7728686 7728843 -94144326 - MIR SINE MIR -37 225 56 2220 96 0 0 chr13 7728843 7729170 -94143999 + AluSx SINE Alu 1 327 0 497 241 103 69 chr13 7729170 7729213 -94143956 - MIR SINE MIR -206 56 16 3801 109 13 2 chr13 7729213 7729735 -94143434 + MER1A DNA MER1_type 1 528 -1 2008 144 0 6 chr13 7729937 7730250 -94142919 + AluSx SINE Alu 1 311 -1 2298 97 0 7 chr13 7731173 7731472 -94141697 + AluSg SINE Alu 1 297 -13 561 243 40 40 chr13 7731655 7731828 -94141341 - MLT1D LTR MaLR 0 505 333 628 223 0 136 chr13 7731879 7732018 -94141151 - MLT1D LTR MaLR -315 190 90 2177 107 3 3 chr13 7732018 7732316 -94140853 + AluSx SINE Alu 1 298 -14 628 223 0 136 chr13 7732316 7732396 -94140773 - MLT1D LTR MaLR -415 90 1 2225 217 0 21 chr13 7732975 7733455 -94139714 - L1MB4 LINE L1 -315 5865 5396 619 299 58 58 chr13 7733444 7734016 -94139153 - HAL1 LINE L1 -1653 854 283 * 2255 106 3 0 chr13 7734195 7734487 -94138682 + AluSq SINE Alu 1 293 -20 28 29 0 0 chr13 7735737 7735772 -94137397 + AT_rich Low_complexity Low_complexity 1 35 0 5643 115 20 53 chr13 7735791 7736908 -94136261 - L1PB1 LINE L1 -21 6130 5058 315 0 0 0 chr13 7739493 7739528 -94133641 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr13 7739785 7739810 -94133359 + (TA)n Simple_repeat Simple_repeat 1 25 0 870 133 193 6 chr13 7739832 7739993 -94133176 + MER46B DNA MER2_type 1 67 -169 308 136 0 0 chr13 7739993 7740037 -94133132 + AluSq SINE Alu 1 44 -257 2813 13 3 0 chr13 7741973 7742281 -94130888 - AluYb8 SINE Alu -9 309 1 411 337 10 15 chr13 7742357 7742556 -94130613 + LTR16B LTR ERVL 258 455 -9 1922 98 4 0 chr13 7743525 7743770 -94129399 + AluSq SINE Alu 29 274 -39 1139 153 6 0 chr13 7743873 7744049 -94129120 - AluSq SINE Alu -136 177 1 2421 77 3 0 chr13 7744710 7745010 -94128159 + AluY SINE Alu 1 301 -10 612 321 15 19 chr13 7745321 7745583 -94127586 + L1ME3 LINE L1 36 296 -6100 * 799 262 70 23 chr13 7745577 7745921 -94127248 + L1ME3 LINE L1 1022 1381 -5015 630 169 0 0 chr13 7745941 7746030 -94127139 + AluJ/FLAM SINE Alu 2 90 -222 2467 46 0 0 chr13 7746032 7746312 -94126857 + AluY SINE Alu 1 280 -31 198 0 0 0 chr13 7746312 7746334 -94126835 + (CA)n Simple_repeat Simple_repeat 1 22 0 5492 78 10 3 chr13 7746337 7747039 -94126130 + L1PA13 LINE L1 5454 6160 -3 1901 236 142 12 chr13 7747040 7747793 -94125376 + L1ME3 LINE L1 2437 3287 -2928 268 293 57 32 chr13 7747839 7747898 -94125271 + L1ME LINE L1 5704 5760 -361 2118 116 0 47 chr13 7747898 7748217 -94124952 + AluSx SINE Alu 1 304 -8 268 293 57 32 chr13 7748217 7748314 -94124855 + L1ME LINE L1 5760 5864 -257 1526 108 21 21 chr13 7748571 7748673 -94124496 + L1MA4 LINE L1 6060 6161 -139 2706 199 107 60 chr13 7748673 7749462 -94123707 + LTR1B LTR ERV1 1 826 0 1526 108 21 21 chr13 7749462 7749600 -94123569 + L1MA4 LINE L1 6160 6300 0 828 212 0 0 chr13 7749843 7750016 -94123153 + AluJb SINE Alu 137 309 0 198 297 208 0 chr13 7750854 7750955 -94122214 - MIR SINE MIR -82 180 59 2225 217 134 46 chr13 7751635 7751925 -94121244 + L1ME3 LINE L1 5148 5411 -820 1978 127 29 0 chr13 7751925 7752224 -94120945 + AluSx SINE Alu 1 307 0 2225 217 134 46 chr13 7752224 7752904 -94120265 + L1ME3 LINE L1 5411 6201 -30 696 238 15 40 chr13 7752988 7753190 -94119979 - L2 LINE L2 0 3313 3117 4503 144 64 53 chr13 7753737 7754164 -94119005 + L1MB3 LINE L1 5072 5493 -690 1538 174 28 21 chr13 7754164 7754451 -94118718 + AluJo SINE Alu 16 304 -8 4503 144 64 53 chr13 7754451 7755129 -94118040 + L1MB3 LINE L1 5493 6181 -2 1669 164 34 20 chr13 7756942 7757234 -94115935 - AluJo SINE Alu -16 296 1 205 26 53 26 chr13 7758159 7758197 -94114972 + (TTTTC)n Simple_repeat Simple_repeat 5 43 0 1814 154 17 7 chr13 7758202 7758500 -94114669 - AluJo SINE Alu -10 302 2 5774 116 18 13 chr13 7759598 7759786 -94113383 + L1PA16 LINE L1 5303 5489 -677 1999 146 7 3 chr13 7759786 7760081 -94113088 + AluJb SINE Alu 1 296 -16 5774 116 18 13 chr13 7760081 7760743 -94112426 + L1PA16 LINE L1 5489 6157 -9 662 44 0 11 chr13 7760858 7760949 -94112220 + (CA)n Simple_repeat Simple_repeat 2 91 0 2420 71 10 0 chr13 7761443 7761739 -94111430 + AluSq SINE Alu 1 299 -14 2048 139 0 16 chr13 7762213 7762530 -94110639 + AluSx SINE Alu 1 312 0 2411 170 42 2 chr13 7762737 7763166 -94110003 - L1PB4 LINE L1 -1 6155 5710 1930 149 0 3 chr13 7763300 7763601 -94109568 + AluJo SINE Alu 13 312 0 1872 186 20 23 chr13 7764686 7765078 -94108091 + L1MB7 LINE L1 5727 6117 -67 2318 91 7 3 chr13 7765414 7765721 -94107448 + AluSp SINE Alu 1 308 -5 285 98 0 0 chr13 7765826 7765867 -94107302 + (TG)n Simple_repeat Simple_repeat 2 42 0 2150 117 17 0 chr13 7765965 7766264 -94106905 + AluSx SINE Alu 1 304 -8 270 272 126 46 chr13 7766335 7766574 -94106595 + L2 LINE L2 1825 2082 -1232 232 290 14 0 chr13 7766665 7766734 -94106435 + L2 LINE L2 2251 2320 -994 2155 121 0 9 chr13 7767462 7767777 -94105392 - AluSq SINE Alu -1 312 1 187 292 70 128 chr13 7768215 7768472 -94104697 + L2 LINE L2 2985 3226 -46 23 33 0 0 chr13 7768634 7768664 -94104505 + AT_rich Low_complexity Low_complexity 1 30 0 1738 155 50 0 chr13 7768669 7768947 -94104222 - AluJb SINE Alu -20 292 1 2176 125 0 0 chr13 7768954 7769249 -94103920 - AluSc SINE Alu -14 295 1 234 180 20 0 chr13 7769260 7769310 -94103859 - L1MC2 LINE L1 -24 6320 6270 3133 98 71 11 chr13 7769311 7769762 -94103407 - MER1A DNA MER1_type -1 528 51 1671 174 25 41 chr13 7769783 7769888 -94103281 - L1MC2 LINE L1 -71 6273 6168 204 40 0 0 chr13 7769888 7769913 -94103256 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1998 134 0 11 chr13 7769918 7770202 -94102967 - AluSx SINE Alu -31 281 1 1671 174 25 41 chr13 7770202 7770352 -94102817 - L1MC2 LINE L1 -180 6164 6017 2352 156 65 12 chr13 7770352 7770755 -94102414 + MSTB LTR MaLR 3 426 0 1671 174 25 41 chr13 7770755 7770855 -94102314 - L1MC2 LINE L1 -327 6017 5917 1144 141 5 44 chr13 7770836 7770987 -94102182 + L1MC1 LINE L1 5741 5883 -450 * 2432 76 0 7 chr13 7770987 7771291 -94101878 + AluY SINE Alu 1 302 -9 1144 141 5 44 chr13 7771291 7771345 -94101824 + L1MC1 LINE L1 5883 5938 -395 239 27 0 0 chr13 7771364 7771401 -94101768 + Alu SINE Alu 265 301 -1 395 148 0 0 chr13 7771406 7771467 -94101702 + L1MC1 LINE L1 5878 5938 -395 2191 131 0 0 chr13 7771890 7772188 -94100981 - AluSq SINE Alu -15 298 1 408 284 129 40 chr13 7773116 7773657 -94099512 + L1MC4a LINE L1 5348 5575 -599 2750 137 11 18 chr13 7773804 7774250 -94098919 + MER65A LTR ERV1 2 444 -1 1701 186 3 0 chr13 7775230 7775520 -94097649 + AluJo SINE Alu 1 291 -21 955 114 0 0 chr13 7776149 7776280 -94096889 - L1PA10 LINE L1 -10 6158 6028 650 189 57 39 chr13 7777368 7777550 -94095619 + MER39 LTR ERV1 399 565 0 201 175 0 0 chr13 7777774 7777814 -94095355 + (CA)n Simple_repeat Simple_repeat 1 40 0 1248 216 164 19 chr13 7778032 7778403 -94094766 + LTR37A LTR ERV1 2 426 0 185 229 66 33 chr13 7779052 7779113 -94094056 - L2 LINE L2 -10 3262 3200 308 217 283 9 chr13 7779145 7779251 -94093918 + MER5A DNA MER1_type 55 189 0 204 314 81 24 chr13 7779386 7779510 -94093659 - MIR3 SINE MIR -30 178 48 890 286 179 29 chr13 7780624 7780736 -94092433 - L2 LINE L2 -71 3242 3148 1671 196 7 0 chr13 7780736 7781027 -94092142 + AluJo SINE Alu 1 293 -19 890 286 179 29 chr13 7781027 7781626 -94091543 - L2 LINE L2 -165 3148 2420 2317 105 0 3 chr13 7782372 7782677 -94090492 + AluSx SINE Alu 1 304 -8 277 297 188 7 chr13 7782706 7782844 -94090325 + MIR3 SINE MIR 36 198 -10 2043 114 0 0 chr13 7783314 7783595 -94089574 + AluSq SINE Alu 33 313 0 2140 100 14 17 chr13 7783747 7784038 -94089131 + AluSx SINE Alu 1 290 -22 186 167 0 0 chr13 7785134 7785170 -94087999 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 260 370 40 76 chr13 7786345 7786594 -94086575 - L2 LINE L2 -32 3240 3001 203 0 37 0 chr13 7786748 7786775 -94086394 + (TA)n Simple_repeat Simple_repeat 1 28 0 532 280 29 51 chr13 7786780 7786946 -94086223 + L1ME LINE L1 4036 4195 -1951 2273 108 7 0 chr13 7786946 7787242 -94085927 - AluSp SINE Alu -15 298 1 532 280 29 51 chr13 7787242 7787350 -94085819 + L1ME LINE L1 4195 4304 -1842 287 141 16 0 chr13 7787365 7787429 -94085740 + T-rich Low_complexity Low_complexity 1 65 0 15349 48 2 2 chr13 7787429 7789992 -94083177 - L1PA5 LINE L1 -2 6152 3588 610 196 22 14 chr13 7789993 7790131 -94083038 + MER4C LTR ERV1 327 465 0 403 246 95 83 chr13 7790167 7790484 -94082685 + L1ME LINE L1 4628 4952 -1194 2056 119 3 0 chr13 7790484 7790812 -94082357 + AluSq SINE Alu 1 329 0 403 246 95 83 chr13 7790812 7790842 -94082327 + L1ME LINE L1 4952 4980 -1166 530 280 75 19 chr13 7790977 7791304 -94081865 + L1ME LINE L1 5052 5414 -750 2005 188 89 32 chr13 7791304 7791766 -94081403 - LTR2B LTR ERV1 0 490 3 530 280 75 19 chr13 7791766 7791915 -94081254 + L1ME LINE L1 5414 5553 -611 514 262 40 0 chr13 7791965 7792114 -94081055 + MER112 DNA MER1_type 2 156 -104 2140 128 0 0 chr13 7792540 7792838 -94080331 + AluSq SINE Alu 2 299 -14 580 196 0 0 chr13 7792838 7792945 -94080224 + MER3 DNA MER1_type 103 209 0 231 270 16 0 chr13 7792902 7792965 -94080204 - MER3 DNA MER1_type -119 90 27 * 802 271 223 42 chr13 7792965 7793318 -94079851 + L2 LINE L2 822 1110 -2204 2516 56 7 13 chr13 7793318 7793623 -94079546 + AluY SINE Alu 1 303 -8 802 271 223 42 chr13 7793623 7793871 -94079298 + L2 LINE L2 1110 1532 -1782 388 269 81 36 chr13 7793872 7793892 -94079277 - L1ME LINE L1 -4153 1927 1909 2391 90 7 0 chr13 7793892 7794193 -94078976 - AluSx SINE Alu -9 303 1 388 269 81 36 chr13 7794193 7795035 -94078134 - L1ME LINE L1 -4171 1909 988 23 0 0 0 chr13 7795416 7795439 -94077730 + AT_rich Low_complexity Low_complexity 1 23 0 978 268 111 35 chr13 7795580 7795686 -94077483 - L1ME LINE L1 -5056 1014 917 195 0 39 0 chr13 7795686 7795712 -94077457 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2190 92 3 0 chr13 7795712 7795995 -94077174 - AluSq SINE Alu -1 309 1 978 268 111 35 chr13 7795995 7796504 -94076665 - L1ME LINE L1 -5152 918 348 1717 176 3 22 chr13 7796591 7796909 -94076260 - AluJb SINE Alu 0 312 1 248 229 0 0 chr13 7796999 7797069 -94076100 + A-rich Low_complexity Low_complexity 1 70 0 378 284 57 7 chr13 7797070 7797211 -94075958 - L1ME LINE L1 -5879 191 44 1270 259 143 18 chr13 7797357 7797832 -94075337 + L2 LINE L2 2045 2598 -716 3131 161 9 33 chr13 7797832 7797958 -94075211 + MER41D LTR ERV1 1 129 -428 2353 103 0 0 chr13 7797958 7798258 -94074911 + AluSx SINE Alu 1 300 -12 3131 161 9 33 chr13 7798258 7798702 -94074467 + MER41D LTR ERV1 129 557 0 1270 259 143 18 chr13 7798702 7798770 -94074399 + L2 LINE L2 2598 2656 -658 676 293 64 69 chr13 7798838 7799336 -94073833 + L2 LINE L2 2621 3216 -97 2050 149 0 0 chr13 7799336 7799644 -94073525 - AluJb SINE Alu -4 308 1 676 293 64 69 chr13 7799644 7799742 -94073427 + L2 LINE L2 3216 3313 0 2826 164 68 83 chr13 7799781 7800202 -94072967 + L1MB7 LINE L1 5360 5786 -398 2042 136 3 3 chr13 7800202 7800510 -94072659 + AluSx SINE Alu 4 311 -1 2826 164 68 83 chr13 7800510 7800778 -94072391 + L1MB7 LINE L1 5786 6056 -128 1654 161 20 24 chr13 7800778 7801070 -94072099 + AluJo SINE Alu 1 291 -21 1588 132 8 0 chr13 7801070 7801305 -94071864 - AluSx SINE Alu -19 293 57 2826 164 68 83 chr13 7801305 7801445 -94071724 + L1MB7 LINE L1 6054 6179 -5 657 289 92 9 chr13 7801904 7802122 -94071047 - MIR SINE MIR -1 261 26 924 231 89 0 chr13 7802799 7802858 -94070311 - Charlie5 DNA MER1_type 0 2624 2572 676 207 8 8 chr13 7802858 7802979 -94070190 + FLAM_A SINE Alu 1 121 -12 924 231 89 0 chr13 7802979 7803278 -94069891 - Charlie5 DNA MER1_type -52 2572 2234 330 188 257 0 chr13 7803275 7803376 -94069793 - Charlie5 DNA MER1_type -2485 127 1 * 390 219 85 37 chr13 7803708 7803872 -94069297 + L1MEd LINE L1 2 173 -5946 542 226 161 5 chr13 7803987 7804186 -94068983 + MLT1J LTR MaLR 36 265 -246 1596 110 200 0 chr13 7804191 7804491 -94068678 + MER46B DNA MER2_type 1 235 -1 2459 87 3 0 chr13 7804685 7804994 -94068175 - AluSp SINE Alu -3 310 1 606 246 104 38 chr13 7805049 7805260 -94067909 + MIR SINE MIR 17 241 -21 543 322 94 5 chr13 7806166 7806368 -94066801 + MIR SINE MIR 31 250 -12 359 251 204 42 chr13 7807004 7807171 -94065998 - MIR SINE MIR -21 241 48 245 182 18 0 chr13 7807396 7807451 -94065718 + L1ME LINE L1 5527 5582 -539 219 69 0 0 chr13 7807560 7807589 -94065580 + (TG)n Simple_repeat Simple_repeat 1 29 0 342 67 0 0 chr13 7807591 7807636 -94065533 + (TA)n Simple_repeat Simple_repeat 1 45 0 335 87 48 164 chr13 7807637 7807676 -94065493 + L1PB1 LINE L1 5795 5837 -314 1801 117 59 38 chr13 7807676 7807966 -94065203 + AluSq SINE Alu 1 296 -17 335 87 48 164 chr13 7807966 7808030 -94065139 + L1PB1 LINE L1 5837 5886 -265 618 13 0 0 chr13 7808030 7808105 -94065064 + L1PA3 LINE L1 6077 6151 -4 32 0 0 23 chr13 7808105 7808133 -94065036 + AT_rich Low_complexity Low_complexity 1 29 -13 1742 101 22 14 chr13 7808133 7808409 -94064760 + L1PB1 LINE L1 5874 6151 0 32 0 0 23 chr13 7808409 7808423 -94064746 + AT_rich Low_complexity Low_complexity 29 42 0 2362 83 13 0 chr13 7810490 7810792 -94062377 - AluSq SINE Alu -6 307 2 362 279 99 87 chr13 7864122 7864444 -94008725 - L1M4 LINE L1 -1826 4320 3995 1055 268 104 30 chr13 7864470 7864917 -94008252 - L1M4 LINE L1 -2218 3928 3411 2261 103 7 0 chr13 7864917 7865207 -94007962 + AluSc SINE Alu 1 292 -17 1055 268 104 30 chr13 7865207 7865449 -94007720 - L1M4 LINE L1 -2735 3411 3188 303 316 95 57 chr13 7865996 7866259 -94006910 - L1M4 LINE L1 -1186 4960 4688 860 132 26 0 chr13 7866840 7866978 -94006191 - L1P LINE L1 -1118 5028 4884 2850 100 15 8 chr13 7866978 7867379 -94005790 + L1PA13 LINE L1 5760 6163 0 860 132 26 0 chr13 7867379 7867392 -94005777 - L1P LINE L1 -1262 4884 4873 1830 167 7 10 chr13 7867956 7868261 -94004908 - AluJb SINE Alu -8 304 1 2287 111 7 0 chr13 7868906 7869213 -94003956 - AluSx SINE Alu -3 309 1 368 287 144 11 chr13 7869797 7869978 -94003191 + MIR SINE MIR 39 243 -19 2291 105 10 0 chr13 7870032 7870327 -94002842 - AluSx SINE Alu -14 298 1 764 77 0 0 chr13 7870420 7870511 -94002658 + AluSg/x SINE Alu 208 298 -14 2289 129 0 0 chr13 7870525 7870836 -94002333 + AluSx SINE Alu 1 311 -1 687 239 101 0 chr13 7871139 7871327 -94001842 - MER102a DNA MER1_type 0 330 124 1134 227 61 64 chr13 7872025 7872110 -94001059 + MER90 LTR ERV1 238 322 -292 2333 91 0 3 chr13 7872110 7872408 -94000761 + AluSq SINE Alu 1 297 -16 1134 227 61 64 chr13 7872408 7872697 -94000472 + MER90 LTR ERV1 322 611 -3 953 271 8 4 chr13 7875730 7875970 -93997199 + MIR SINE MIR 1 241 -21 348 296 24 48 chr13 7876836 7876961 -93996208 - MIR SINE MIR -117 145 24 1508 127 0 0 chr13 7877681 7877894 -93995275 + AluJb SINE Alu 1 213 -99 821 153 8 15 chr13 7879069 7879200 -93993969 + FLAM_A SINE Alu 4 133 0 767 146 0 41 chr13 7879481 7879604 -93993565 - FLAM_A SINE Alu -13 120 3 221 163 75 0 chr13 7879628 7879708 -93993461 + (TA)n Simple_repeat Simple_repeat 1 86 0 1914 118 3 88 chr13 7879955 7880294 -93992875 - AluSx SINE Alu -2 310 1 4477 239 48 62 chr13 7880711 7880743 -93992426 - L1M4c LINE L1 -4186 2639 2608 1538 142 62 31 chr13 7880743 7880990 -93992179 - L1MB5 LINE L1 -8 6166 5907 2477 186 13 45 chr13 7880990 7881462 -93991707 + MSTB2 LTR MaLR 1 457 0 1538 142 62 31 chr13 7881462 7881503 -93991666 - L1MB5 LINE L1 -267 5907 5869 4477 239 48 62 chr13 7881503 7883982 -93989187 - L1M4c LINE L1 -4217 2608 14 9499 52 1 0 chr13 7884760 7885830 -93987339 + MER11C LTR ERVK 1 1071 0 297 320 20 0 chr13 7886505 7886605 -93986564 - L3 LINE CR1 -249 1328 1227 642 153 46 8 chr13 7889696 7889827 -93983342 + L1MA4A LINE L1 6168 6303 0 27 0 0 0 chr13 7890431 7890458 -93982711 + AT_rich Low_complexity Low_complexity 1 27 0 831 211 139 0 chr13 7890908 7891088 -93982081 - MER3 DNA MER1_type -4 205 1 421 222 159 8 chr13 7892441 7892567 -93980602 + MIR3 SINE MIR 4 148 -60 184 382 80 43 chr13 7892686 7893196 -93979973 - L2 LINE L2 -661 2653 2125 216 220 169 0 chr13 7893518 7893577 -93979592 - L2 LINE L2 -2066 1248 1180 1425 226 108 39 chr13 7893860 7894294 -93978875 + MLT1C LTR MaLR 3 466 -1 668 265 113 95 chr13 7899084 7899974 -93973195 - L2 LINE L2 0 3313 2318 379 252 72 9 chr13 7900290 7900401 -93972768 - MER102a DNA MER1_type -136 194 77 289 286 50 21 chr13 7900588 7900728 -93972441 + L2 LINE L2 3106 3249 -64 2491 258 22 41 chr13 7904313 7905125 -93968044 + L1ME1 LINE L1 5373 6334 0 412 259 27 34 chr13 7906636 7906783 -93966386 + Tigger8 DNA MER2_type 430 575 -91 192 40 0 0 chr13 7907418 7907443 -93965726 + (TC)n Simple_repeat Simple_repeat 2 26 0 843 186 84 0 chr13 7907449 7907616 -93965553 - AluY SINE Alu -3 308 128 1337 144 4 48 chr13 7907619 7907848 -93965321 - AluSg/x SINE Alu -11 301 83 1360 180 62 42 chr13 7908444 7908733 -93964436 - AluJo SINE Alu -17 295 1 12051 118 43 9 chr13 7908804 7910646 -93962523 - Tigger1 DNA MER2_type 0 2418 514 1675 158 0 4 chr13 7910663 7910929 -93962240 - Tigger1 DNA MER2_type -2153 265 1 2099 121 0 3 chr13 7911023 7911335 -93961834 - AluSx SINE Alu 0 311 1 643 326 49 0 chr13 7911386 7911610 -93961559 - MIR SINE MIR -14 248 14 1638 149 19 55 chr13 7911979 7912288 -93960881 - AluJb SINE Alu -14 298 1 3792 180 100 9 chr13 7914008 7914990 -93958179 - L1MB8 LINE L1 -6 6172 5092 396 0 0 0 chr13 7915478 7915522 -93957647 + (CA)n Simple_repeat Simple_repeat 2 45 0 2323 113 0 0 chr13 7916823 7917132 -93956037 - AluSc SINE Alu 0 309 1 2578 173 86 29 chr13 7917154 7917703 -93955466 + L1MB5 LINE L1 5587 6166 -8 287 300 15 62 chr13 7917883 7918013 -93955156 + MER5B DNA MER1_type 49 172 -6 1714 149 27 27 chr13 7918092 7918388 -93954781 - AluJo SINE Alu -14 298 3 204 317 65 65 chr13 7918526 7918649 -93954520 - MIR SINE MIR -122 140 18 460 233 54 0 chr13 7919401 7919530 -93953639 - L1ME4a LINE L1 0 6121 5986 210 91 0 0 chr13 7922858 7922891 -93950278 + (CAGA)n Simple_repeat Simple_repeat 2 34 0 29 0 0 0 chr13 7923860 7923889 -93949280 + AT_rich Low_complexity Low_complexity 1 29 0 1885 165 9 6 chr13 7923890 7924217 -93948952 - L1MA4 LINE L1 -10 6290 5963 215 317 39 39 chr13 7924625 7924729 -93948440 - MIR SINE MIR -47 215 112 2068 114 3 3 chr13 7924762 7925059 -93948110 - AluSx SINE Alu -15 297 1 813 185 0 22 chr13 7925182 7925317 -93947852 + FLAM_C SINE Alu 1 132 -1 396 103 0 0 chr13 7927870 7927928 -93945241 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 913 286 145 31 chr13 7927980 7928393 -93944776 + L2 LINE L2 2854 3313 0 333 303 62 28 chr13 7928928 7929073 -93944096 - L2 LINE L2 -458 2856 2707 4185 177 57 37 chr13 7929074 7930356 -93942813 - L1MB7 LINE L1 0 6184 4870 497 276 8 16 chr13 7930440 7930563 -93942606 - L2 LINE L2 -8 3305 3184 270 262 29 141 chr13 7931098 7931304 -93941865 - MIR SINE MIR -17 245 63 509 80 13 0 chr13 7933182 7933257 -93939912 + (TGGA)n Simple_repeat Simple_repeat 1 76 0 2423 77 17 0 chr13 7933916 7934216 -93938953 - AluY SINE Alu -6 305 1 1096 188 99 5 chr13 7934716 7934876 -93938293 - AluJo SINE Alu -8 304 116 189 0 0 0 chr13 7934876 7934897 -93938272 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1096 188 99 5 chr13 7934897 7934959 -93938210 - AluJo SINE Alu -196 116 61 628 221 19 6 chr13 7934967 7935125 -93938044 - L1MB7 LINE L1 0 6184 6025 811 173 71 0 chr13 7935125 7935293 -93937876 - L1 LINE L1 -1006 5140 4961 2829 176 8 51 chr13 7935363 7935949 -93937220 - L1MB7 LINE L1 -192 5992 5432 853 300 88 11 chr13 7936670 7937126 -93936043 - L1ME3A LINE L1 -244 5926 5436 292 312 21 7 chr13 7937157 7937298 -93935871 - L1ME3A LINE L1 -3746 2400 2258 1422 181 63 52 chr13 7937566 7937969 -93935200 + MLT1E3 LTR MaLR 140 624 0 218 320 13 13 chr13 7938714 7938792 -93934377 - L2 LINE L2 -33 3239 3162 200 261 0 0 chr13 7939706 7939752 -93933417 - MIR SINE MIR -119 143 98 1042 190 59 69 chr13 7940103 7940541 -93932628 - MLT1D LTR MaLR -2 503 1 323 286 60 30 chr13 7941967 7942100 -93931069 + MIR SINE MIR 12 148 -114 180 200 0 0 chr13 7942788 7942828 -93930341 + CT-rich Low_complexity Low_complexity 1 40 0 195 302 175 24 chr13 7943141 7943267 -93929902 - MIR SINE MIR -35 227 83 266 230 95 0 chr13 7943657 7943731 -93929438 + MER103 DNA DNA 74 154 -12 1769 169 3 7 chr13 7943763 7944065 -93929104 + AluJb SINE Alu 1 301 -11 1416 192 8 4 chr13 7944547 7944808 -93928361 + AluJb SINE Alu 1 262 -50 609 193 12 28 chr13 7944809 7945062 -93928107 + GA-rich Low_complexity Low_complexity 1 249 0 358 204 20 10 chr13 7945073 7945171 -93927998 + GA-rich Low_complexity Low_complexity 4 102 0 470 285 43 38 chr13 7947620 7947806 -93925363 - L3b LINE CR1 -180 1403 1217 214 296 0 19 chr13 7947866 7947920 -93925249 + L2 LINE L2 3219 3271 -1 344 349 66 0 chr13 7948244 7948396 -93924773 - L2 LINE L2 -10 3262 3101 2282 121 0 0 chr13 7948396 7948693 -93924476 - AluSq SINE Alu -16 297 1 1929 160 0 3 chr13 7949015 7949309 -93923860 - AluJb SINE Alu -13 299 7 3624 139 43 3 chr13 7949418 7949995 -93923174 + MER7C DNA MER2_type 2 601 -1 857 230 72 5 chr13 7950312 7950521 -93922648 - MER58A DNA MER1_type -1 223 1 1046 158 18 0 chr13 7951254 7951425 -93921744 - AluJb SINE Alu -12 300 127 2429 83 0 6 chr13 7951425 7951738 -93921431 - AluY SINE Alu 0 311 1 2538 78 0 0 chr13 7953782 7954090 -93919079 + AluY SINE Alu 1 308 -3 1579 180 37 27 chr13 7955136 7955431 -93917738 - AluJo SINE Alu -14 298 1 2089 142 51 3 chr13 7955741 7956073 -93917096 - MER7A DNA MER2_type 0 346 1 210 37 0 0 chr13 7956410 7956437 -93916732 + (TC)n Simple_repeat Simple_repeat 2 28 0 2148 154 61 50 chr13 7956730 7957192 -93915977 + MLT1C LTR MaLR 1 467 0 2242 72 0 31 chr13 7958680 7959002 -93914167 - AluSx SINE Alu 0 313 1 191 261 130 22 chr13 7961444 7961536 -93911633 - MIR SINE MIR -52 210 109 691 196 8 8 chr13 7963635 7963791 -93909378 + FLAM_A SINE Alu 1 133 0 1573 125 52 66 chr13 7965190 7965478 -93907691 - AluJo SINE Alu -3 309 26 234 244 119 62 chr13 7965554 7965747 -93907422 - L1ME4a LINE L1 -60 6061 5858 341 141 0 94 chr13 7965747 7965811 -93907358 + AluJ/FLAM SINE Alu 1 58 -244 2037 131 24 0 chr13 7965933 7966224 -93906945 + AluSx SINE Alu 1 298 -14 610 117 0 29 chr13 7966364 7966467 -93906702 - FRAM SINE Alu -7 169 70 29 0 0 0 chr13 7968439 7968468 -93904701 + AT_rich Low_complexity Low_complexity 1 29 0 2022 130 0 10 chr13 7969379 7969671 -93903498 + AluSg SINE Alu 1 289 -21 429 145 0 0 chr13 7970079 7970155 -93903014 - AluJ/FRAM SINE Alu -10 302 227 586 301 12 45 chr13 7970282 7970528 -93902641 + MIR SINE MIR 3 240 -22 198 0 0 0 chr13 7971258 7971280 -93901889 + (TG)n Simple_repeat Simple_repeat 1 22 0 359 202 12 0 chr13 7972729 7972813 -93900356 + GA-rich Low_complexity Low_complexity 2 86 0 696 197 0 0 chr13 7975251 7975373 -93897796 + FLAM_A SINE Alu 1 122 -11 278 173 58 19 chr13 7975374 7975478 -93897691 + (TA)n Simple_repeat Simple_repeat 1 108 0 2254 123 0 22 chr13 7975734 7976051 -93897118 + AluSx SINE Alu 1 310 -2 464 230 164 7 chr13 7978276 7978428 -93894741 + MER5A DNA MER1_type 14 189 0 1890 229 65 49 chr13 7979975 7980526 -93892643 - MER119 DNA MER1_type -21 562 3 223 356 85 5 chr13 7980955 7981143 -93892026 + L3 LINE CR1 849 1051 -526 361 282 41 47 chr13 7981180 7981350 -93891819 + L3 LINE CR1 1156 1324 -253 5218 73 30 6 chr13 7983751 7984426 -93888743 + LTR8 LTR ERV1 1 691 0 258 106 0 0 chr13 7986482 7986529 -93886640 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 2032 109 0 21 chr13 7986529 7986814 -93886355 - AluSq SINE Alu -34 279 1 228 244 0 0 chr13 7987444 7987534 -93885635 + (TG)n Simple_repeat Simple_repeat 2 91 0 197 247 10 0 chr13 7987569 7987666 -93885503 + (TG)n Simple_repeat Simple_repeat 2 99 0 3274 100 15 0 chr13 7987872 7988333 -93884836 + L1PA10 LINE L1 5701 6168 0 291 377 62 0 chr13 7989782 7989928 -93883241 + MER91A DNA MER1_type 17 171 -25 322 220 14 113 chr13 7992722 7992863 -93880306 + L1MB3 LINE L1 6050 6176 -7 1680 186 46 15 chr13 7994365 7994692 -93878477 - MER1B DNA MER1_type 0 337 1 2329 53 0 28 chr13 7994749 7995033 -93878136 + AluY SINE Alu 16 291 -20 1999 141 3 20 chr13 7995242 7995548 -93877621 - AluSx SINE Alu -11 301 1 1202 187 72 75 chr13 7996268 7996484 -93876685 + MER2 DNA MER2_type 1 218 -127 2139 101 3 3 chr13 7996484 7996795 -93876374 - AluSq SINE Alu 0 311 1 1202 187 72 75 chr13 7996795 7996898 -93876271 + MER2 DNA MER2_type 218 320 -25 189 206 48 16 chr13 7997393 7997456 -93875713 - L2 LINE L2 -251 3021 2957 2298 93 3 0 chr13 7998516 7998806 -93874363 - AluSg SINE Alu -8 302 12 1809 110 0 4 chr13 7998871 7999107 -93874062 + AluSx SINE Alu 1 235 -77 25 0 0 0 chr13 7999122 7999147 -93874022 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr13 8000432 8000455 -93872714 + AT_rich Low_complexity Low_complexity 1 23 0 1452 223 35 77 chr13 8000455 8000509 -93872660 - L1ME1 LINE L1 -10 6156 6101 2048 101 3 82 chr13 8000509 8000837 -93872332 - AluSq SINE Alu -11 302 1 1452 223 35 77 chr13 8000837 8001325 -93871844 - L1ME1 LINE L1 -65 6101 5637 366 326 62 13 chr13 8001804 8002028 -93871141 + MIR SINE MIR 8 242 -20 347 327 65 6 chr13 8002133 8002301 -93870868 - MIR SINE MIR -51 211 34 5923 132 21 7 chr13 8003125 8004164 -93869005 + L1PA13 LINE L1 4270 5347 -816 1892 148 22 29 chr13 8004164 8004475 -93868694 + AluJb SINE Alu 1 309 -3 5923 132 21 7 chr13 8004475 8005283 -93867886 + L1PA13 LINE L1 5347 6142 -21 411 21 0 0 chr13 8005283 8005331 -93867838 + (CA)n Simple_repeat Simple_repeat 2 49 0 1484 160 65 44 chr13 8006385 8006678 -93866491 + AluJo SINE Alu 3 301 -11 455 172 16 16 chr13 8006691 8006813 -93866356 + GA-rich Low_complexity Low_complexity 3 124 0 284 304 8 32 chr13 8007261 8007386 -93865783 + (TATATG)n Simple_repeat Simple_repeat 5 126 0 1248 227 50 59 chr13 8007989 8008447 -93864722 + L1ME1 LINE L1 5704 6157 -9 360 0 0 0 chr13 8008575 8008615 -93864554 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 111 3 7 chr13 8009706 8010003 -93863166 - AluSx SINE Alu -16 296 1 1350 105 51 43 chr13 8010643 8010740 -93862429 + L1MA3 LINE L1 6047 6142 -163 2321 101 0 0 chr13 8010740 8011037 -93862132 + AluSq SINE Alu 1 297 -16 1350 105 51 43 chr13 8011037 8011196 -93861973 + L1MA3 LINE L1 6142 6305 0 35 0 0 0 chr13 8011196 8011231 -93861938 + AT_rich Low_complexity Low_complexity 1 35 0 490 94 47 24 chr13 8012561 8012646 -93860523 - MER34 LTR ERV1 0 542 456 810 84 0 9 chr13 8012650 8012757 -93860412 + FLAM_A SINE Alu 24 129 -13 2159 183 27 5 chr13 8012757 8013199 -93859970 - MER34 LTR ERV1 -64 478 27 585 258 91 45 chr13 8013753 8013974 -93859195 - MIR SINE MIR 0 262 32 195 283 43 0 chr13 8015252 8015298 -93857871 + L2 LINE L2 363 410 -2904 2828 82 0 11 chr13 8015471 8015850 -93857319 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr13 8017217 8017253 -93855916 + AT_rich Low_complexity Low_complexity 1 36 0 1860 167 0 26 chr13 8018981 8019286 -93853883 + AluJb SINE Alu 1 297 -15 1852 142 87 3 chr13 8019877 8020344 -93852825 - LTR31 LTR ERV1 -60 559 1 2406 189 17 14 chr13 8020382 8021306 -93851863 - L1M4 LINE L1 -477 5707 4786 1630 164 26 56 chr13 8021888 8022071 -93851098 - AluJo SINE Alu -16 296 124 2279 114 0 0 chr13 8022071 8022368 -93850801 + AluSx SINE Alu 1 297 -15 1630 164 26 56 chr13 8022368 8022489 -93850680 - AluJo SINE Alu -188 124 1 978 164 26 11 chr13 8022904 8023093 -93850076 + L1PA16 LINE L1 5959 6150 -16 291 208 0 52 chr13 8023148 8023225 -93849944 + L2 LINE L2 2330 2402 -912 184 294 56 86 chr13 8023256 8023453 -93849716 + L2 LINE L2 2826 3016 -256 414 263 26 51 chr13 8023461 8023617 -93849552 + L2 LINE L2 3160 3311 -2 26 30 0 0 chr13 8024329 8024362 -93848807 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr13 8025127 8025164 -93848005 + AT_rich Low_complexity Low_complexity 1 37 0 1702 180 3 37 chr13 8025323 8025623 -93847546 + AluJb SINE Alu 1 290 -22 431 289 75 19 chr13 8025629 8025947 -93847222 - HAL1 LINE L1 -143 2364 2029 271 271 182 6 chr13 8026043 8026224 -93846945 - HAL1 LINE L1 -607 1900 1688 252 250 61 45 chr13 8026239 8026371 -93846798 + Charlie2 DNA MER1_type 2019 2152 -710 * 389 188 134 38 chr13 8026365 8026551 -93846618 + Charlie2 DNA MER1_type 2401 2604 -258 3136 62 60 0 chr13 8026552 8026985 -93846184 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 8026985 8027057 -93846112 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 8027083 8027138 -93846031 - L2 LINE L2 -103 3169 3117 719 92 46 35 chr13 8027138 8027312 -93845857 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 8027443 8027833 -93845336 + MLT2D LTR ERVL 1 362 -52 261 57 0 0 chr13 8027842 8027877 -93845292 + (CA)n Simple_repeat Simple_repeat 1 35 0 673 171 62 21 chr13 8027882 8028075 -93845094 + Charlie2 DNA MER1_type 2594 2794 -68 3766 186 64 30 chr13 8028100 8028488 -93844681 + L1MB3 LINE L1 4598 4971 -1212 1809 147 0 58 chr13 8028488 8028801 -93844368 + AluJb SINE Alu 1 295 -17 3766 186 64 30 chr13 8028801 8029945 -93843224 + L1MB3 LINE L1 4971 6173 -10 337 362 88 27 chr13 8030132 8030461 -93842708 + L2 LINE L2 2920 3268 -4 1613 181 57 10 chr13 8031437 8031735 -93841434 - AluJb SINE Alu 0 312 1 376 308 51 10 chr13 8032192 8032402 -93840767 + MIR SINE MIR 38 254 -8 293 359 0 0 chr13 8032523 8032615 -93840554 - L2 LINE L2 -19 3294 3203 212 175 0 0 chr13 8033405 8033445 -93839724 + T-rich Low_complexity Low_complexity 3 42 0 999 221 38 14 chr13 8035435 8035648 -93837521 - MER20 DNA MER1_type -1 218 1 245 275 190 16 chr13 8036163 8036410 -93836759 - L1MC/D LINE L1 -2265 5543 5254 267 312 135 18 chr13 8036789 8036959 -93836210 - L2 LINE L2 -369 2945 2756 24 0 0 0 chr13 8037173 8037197 -93835972 + AT_rich Low_complexity Low_complexity 1 24 0 399 254 53 77 chr13 8037279 8037617 -93835552 - HAL1b LINE L1 -841 507 178 2087 129 0 3 chr13 8037732 8038026 -93835143 - AluSx SINE Alu -19 293 1 2028 148 3 10 chr13 8038900 8039211 -93833958 - AluJo SINE Alu -1 311 3 1072 184 79 44 chr13 8039680 8039995 -93833174 + L1MA7 LINE L1 5966 6291 0 219 281 146 73 chr13 8040194 8040290 -93832879 - L2 LINE L2 -25 3247 3145 2259 98 0 16 chr13 8040850 8041166 -93832003 - AluSx SINE Alu -1 311 1 477 0 0 0 chr13 8043423 8043476 -93829693 + (TA)n Simple_repeat Simple_repeat 1 53 0 192 260 83 73 chr13 8043569 8043635 -93829534 - L2 LINE L2 0 3272 3206 344 306 87 35 chr13 8043635 8043765 -93829404 + MER5A DNA MER1_type 1 144 -45 1715 158 14 28 chr13 8043765 8044056 -93829113 - AluJb SINE Alu -14 298 12 344 306 87 35 chr13 8044056 8044098 -93829071 + MER5A DNA MER1_type 144 182 -7 523 229 76 111 chr13 8044380 8044777 -93828392 - L1MC4 LINE L1 -9 8033 7651 2350 93 3 0 chr13 8044966 8045267 -93827902 - AluY SINE Alu -9 302 1 2213 128 0 0 chr13 8045315 8045621 -93827548 + AluSx SINE Alu 1 306 -6 211 343 135 27 chr13 8046876 8047290 -93825879 + L2 LINE L2 2075 2533 -781 557 185 11 0 chr13 8047295 8047387 -93825782 - FLAM_A SINE Alu -49 93 1 263 287 37 29 chr13 8047687 8047823 -93825346 + Charlie2 DNA MER1_type 170 306 -2556 435 227 136 23 chr13 8048129 8048305 -93824864 + Charlie2a DNA MER1_type 1467 1662 -1200 1202 268 31 19 chr13 8048377 8048863 -93824306 + Charlie2a DNA MER1_type 1661 2152 -710 389 188 134 38 chr13 8048857 8049043 -93824126 + Charlie2a DNA MER1_type 2401 2604 -258 * 3136 62 60 0 chr13 8049044 8049477 -93823692 + L1PA10 LINE L1 5710 6168 0 267 250 56 0 chr13 8049477 8049549 -93823620 - MIR SINE MIR -157 105 30 220 254 0 36 chr13 8049575 8049630 -93823539 - L2 LINE L2 -103 3169 3117 755 84 34 50 chr13 8049630 8049809 -93823360 + (ATATG)n Simple_repeat Simple_repeat 4 179 0 1279 172 33 105 chr13 8049940 8050330 -93822839 + MLT2D LTR ERVL 1 362 -52 297 51 0 0 chr13 8050339 8050378 -93822791 + (CA)n Simple_repeat Simple_repeat 1 39 0 705 194 58 19 chr13 8050383 8050589 -93822580 + Charlie2a DNA MER1_type 2594 2807 -55 1561 212 40 52 chr13 8050602 8050993 -93822176 + L1MC4a LINE L1 4598 4985 -1161 1808 144 0 58 chr13 8050993 8051306 -93821863 + AluJb SINE Alu 1 295 -17 1561 212 40 52 chr13 8051306 8051334 -93821835 + L1MC4a LINE L1 4985 5012 -1134 339 293 72 80 chr13 8051686 8052252 -93820917 + L1 LINE L1 4217 4778 -1368 240 238 88 7 chr13 8052349 8052491 -93820678 + L1P LINE L1 4883 5045 -1101 410 284 66 25 chr13 8052571 8052827 -93820342 + L1 LINE L1 5150 5423 -748 687 319 60 45 chr13 8052839 8053434 -93819735 + L1MC4a LINE L1 5317 5920 -1888 1235 173 128 12 chr13 8053444 8053687 -93819482 - AluJo SINE Alu -30 282 12 180 0 0 0 chr13 8053735 8053755 -93819414 + (TG)n Simple_repeat Simple_repeat 2 21 0 1649 179 155 29 chr13 8054642 8054913 -93818256 - LTR54B LTR ERV1 -32 466 124 356 0 23 0 chr13 8054913 8054957 -93818212 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1649 179 155 29 chr13 8054957 8055099 -93818070 - LTR54B LTR ERV1 -374 124 1 261 273 34 23 chr13 8055410 8055498 -93817671 + L2 LINE L2 3184 3272 0 423 0 0 0 chr13 8056175 8056222 -93816947 + (CA)n Simple_repeat Simple_repeat 1 47 0 653 73 0 0 chr13 8057518 8057600 -93815569 + L1P LINE L1 2 83 -6063 1056 205 63 14 chr13 8060496 8060835 -93812334 - MSTD LTR MaLR 0 396 1 2231 104 19 0 chr13 8061144 8061451 -93811718 + AluSq SINE Alu 1 313 0 484 140 0 20 chr13 8061454 8061554 -93811615 + (GGAA)n Simple_repeat Simple_repeat 3 100 0 1700 218 19 14 chr13 8062112 8062475 -93810694 + MLT1A1 LTR MaLR 1 365 0 2265 106 0 0 chr13 8062988 8063280 -93809889 - AluSg SINE Alu -18 292 1 24 0 0 0 chr13 8064335 8064359 -93808810 + AT_rich Low_complexity Low_complexity 1 24 0 2391 90 3 0 chr13 8064645 8064946 -93808223 + AluSq SINE Alu 1 302 -11 417 305 89 39 chr13 8064962 8065244 -93807925 - L2 LINE L2 -35 3237 2942 335 200 0 0 chr13 8066365 8066425 -93806744 - MLT1J2 LTR MaLR -45 405 346 1694 255 30 30 chr13 8066443 8066976 -93806193 + MER74B LTR ERVL 56 588 -34 400 226 69 2 chr13 8067081 8067220 -93805949 - MLT1J2 LTR MaLR -229 180 36 2337 90 0 3 chr13 8070051 8070350 -93802819 + AluSx SINE Alu 1 298 -14 949 156 58 40 chr13 8070586 8070759 -93802410 - FRAM SINE Alu -1 175 1 1224 168 28 5 chr13 8070924 8071138 -93802031 + MER20 DNA MER1_type 1 219 0 837 130 0 3 chr13 8071447 8071670 -93801499 + AluSq SINE Alu 2 297 -16 477 243 56 21 chr13 8071679 8071823 -93801346 + MIR SINE MIR 73 221 -41 1972 127 28 11 chr13 8071865 8072148 -93801021 + AluSx SINE Alu 1 288 -24 222 37 0 0 chr13 8072148 8072175 -93800994 + (TA)n Simple_repeat Simple_repeat 1 27 0 288 266 108 29 chr13 8072975 8073079 -93800090 + L2 LINE L2 2392 2511 -803 1532 163 83 28 chr13 8073079 8073367 -93799802 - AluJo SINE Alu -8 304 1 288 266 108 29 chr13 8073367 8073401 -93799768 + L2 LINE L2 2511 2541 -773 726 150 92 0 chr13 8073431 8073551 -93799618 + MER3 DNA MER1_type 3 133 -76 4168 167 38 60 chr13 8073553 8073720 -93799449 - L1MB7 LINE L1 -8 6176 6007 2489 84 0 0 chr13 8073720 8074019 -93799150 + AluSx SINE Alu 1 299 -13 4168 167 38 60 chr13 8074019 8075028 -93798141 - L1MB7 LINE L1 -177 6007 5024 1538 185 19 0 chr13 8075028 8075298 -93797871 + L1PB4 LINE L1 5881 6155 -1 4168 167 38 60 chr13 8075298 8075331 -93797838 - L1MB7 LINE L1 -1160 5024 4992 816 147 78 11 chr13 8075337 8075528 -93797641 - L1MB4 LINE L1 -1 6179 5976 389 216 11 0 chr13 8075528 8075616 -93797553 + MER3 DNA MER1_type 121 209 0 559 306 76 20 chr13 8075632 8076093 -93797076 + L2 LINE L2 2595 3073 -240 1027 170 0 6 chr13 8076124 8076295 -93796874 - FRAM SINE Alu -10 166 1 2299 114 10 0 chr13 8076313 8076621 -93796548 - AluSx SINE Alu 0 312 2 476 257 131 23 chr13 8076631 8076806 -93796363 + L2 LINE L2 3119 3312 -1 1361 157 25 58 chr13 8077534 8077675 -93795494 + L1PA16 LINE L1 5896 6026 -140 2247 97 0 0 chr13 8077675 8077996 -93795173 + AluSg1 SINE Alu 2 322 0 1361 157 25 58 chr13 8077996 8078127 -93795042 + L1PA16 LINE L1 6026 6160 -6 205 171 0 0 chr13 8078309 8078344 -93794825 + A-rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr13 8078715 8078735 -93794434 + (TTGG)n Simple_repeat Simple_repeat 4 23 0 507 307 70 18 chr13 8079893 8080235 -93792934 - L1ME4a LINE L1 -52 6069 5710 588 241 69 46 chr13 8080256 8080517 -93792652 - L2 LINE L2 -588 2726 2460 438 281 131 14 chr13 8081908 8082129 -93791040 + MER115 DNA AcHobo 1 247 -446 229 290 121 40 chr13 8084953 8085110 -93788059 + MIR SINE MIR 32 196 -63 257 174 14 0 chr13 8085355 8085424 -93787745 + (CA)n Simple_repeat Simple_repeat 1 70 0 334 224 51 10 chr13 8085426 8085524 -93787645 + MER5A DNA MER1_type 88 189 0 2260 66 0 0 chr13 8087571 8087845 -93785324 + AluY SINE Alu 33 306 -5 4407 128 38 46 chr13 8088423 8089183 -93783986 - LTR1 LTR ERV1 0 785 32 566 271 181 52 chr13 8090773 8091198 -93781971 + MLT1K LTR MaLR 17 496 -92 1405 206 41 16 chr13 8091466 8091782 -93781387 - MER33 DNA MER1_type 0 324 1 2314 70 39 0 chr13 8092392 8092678 -93780491 - AluY SINE Alu -14 297 1 210 302 215 19 chr13 8092746 8093057 -93780112 + L2 LINE L2 2591 2962 -352 3098 179 41 80 chr13 8093251 8094015 -93779154 + L1MB2 LINE L1 5438 6171 0 25 0 0 0 chr13 8095769 8095794 -93777375 + AT_rich Low_complexity Low_complexity 1 25 0 1171 60 7 0 chr13 8097085 8097235 -93775934 - MER41B LTR ERV1 0 635 485 * 1924 89 4 4 chr13 8097233 8097492 -93775677 - MER41A LTR ERV1 -295 259 1 390 42 0 0 chr13 8100330 8100378 -93772791 + (GA)n Simple_repeat Simple_repeat 1 48 0 465 198 10 0 chr13 8100504 8100600 -93772569 + MER5A DNA MER1_type 9 105 -84 627 51 0 0 chr13 8101646 8101725 -93771444 + (ATG)n Simple_repeat Simple_repeat 1 79 0 239 289 48 0 chr13 8101806 8101889 -93771280 - MIR SINE MIR -135 127 41 1275 115 22 0 chr13 8102011 8102194 -93770975 + AluSq SINE Alu 121 307 -6 2374 108 0 0 chr13 8103857 8104164 -93769005 - AluSq SINE Alu -6 307 1 660 216 52 71 chr13 8105771 8106039 -93767130 + L1ME3A LINE L1 5903 6165 -5 2253 89 10 0 chr13 8106096 8106387 -93766782 - AluSq SINE Alu -19 294 1 2113 116 7 3 chr13 8107330 8107623 -93765546 + AluSp SINE Alu 1 294 -19 261 0 0 0 chr13 8107997 8108026 -93765143 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr13 8108026 8108056 -93765113 + AT_rich Low_complexity Low_complexity 1 30 0 2320 99 0 3 chr13 8108632 8108935 -93764234 + AluSg SINE Alu 1 302 -8 2118 106 0 3 chr13 8110069 8110375 -93762794 - AluSx SINE Alu 0 305 1 2215 79 41 7 chr13 8110736 8111026 -93762143 - AluY SINE Alu -10 301 2 366 42 0 0 chr13 8111208 8111256 -93761913 + (TC)n Simple_repeat Simple_repeat 1 48 0 213 175 0 0 chr13 8111332 8111372 -93761797 + CT-rich Low_complexity Low_complexity 2 41 0 44786 37 5 1 chr13 8111800 8117929 -93755240 - L1PA4 LINE L1 0 6155 2 413 311 28 38 chr13 8118366 8118684 -93754485 - L2 LINE L2 -373 2941 2627 2614 181 71 68 chr13 8118776 8119496 -93753673 - MER72 LTR ERV1 0 722 1 34 55 0 0 chr13 8120218 8120273 -93752896 + AT_rich Low_complexity Low_complexity 1 55 0 186 240 56 104 chr13 8121501 8121626 -93751543 + L2 LINE L2 2203 2321 -993 297 0 0 0 chr13 8121691 8121724 -93751445 + (CA)n Simple_repeat Simple_repeat 1 33 0 675 120 0 0 chr13 8121777 8121902 -93751267 + AluSp/q SINE Alu 193 317 0 503 270 173 17 chr13 8122159 8122448 -93750721 + L2 LINE L2 2627 2960 -354 238 249 142 53 chr13 8122532 8122701 -93750468 + L2 LINE L2 3130 3313 0 357 310 7 45 chr13 8122703 8122749 -93750420 + MER5B DNA MER1_type 30 76 -102 1303 193 9 0 chr13 8122749 8122982 -93750187 - MER46A DNA MER2_type 0 236 2 357 310 7 45 chr13 8122982 8123090 -93750079 + MER5B DNA MER1_type 76 178 0 180 0 0 0 chr13 8124167 8124187 -93748982 + (TC)n Simple_repeat Simple_repeat 2 21 0 1991 69 3 73 chr13 8125709 8125998 -93747171 + AluSx SINE Alu 11 279 -33 353 125 0 0 chr13 8126001 8126049 -93747120 + AluS SINE Alu 230 277 -23 349 118 0 0 chr13 8126052 8126144 -93747025 + AluSc SINE Alu 230 321 0 1033 174 25 45 chr13 8127845 8128176 -93744993 + L1MA6 LINE L1 5997 6298 -2 1904 173 48 41 chr13 8128407 8128870 -93744299 - L1MB4 LINE L1 -39 6141 5676 21 0 0 0 chr13 8129674 8129695 -93743474 + AT_rich Low_complexity Low_complexity 1 21 0 3827 169 36 12 chr13 8130635 8130907 -93742262 + L1MA7 LINE L1 5509 5773 -518 369 0 0 0 chr13 8130907 8130948 -93742221 + (CA)n Simple_repeat Simple_repeat 2 42 0 3827 169 36 12 chr13 8130948 8131430 -93741739 + L1MA7 LINE L1 5773 6281 -10 213 266 121 32 chr13 8131672 8131796 -93741373 + MIR SINE MIR 15 149 -113 267 360 22 14 chr13 8132621 8132760 -93740409 + MIR3 SINE MIR 43 182 -26 279 290 117 61 chr13 8132775 8133203 -93739966 + L2 LINE L2 1931 2382 -932 582 268 199 35 chr13 8134017 8134420 -93738749 - LTR33A LTR ERVL 0 523 55 189 173 19 39 chr13 8134554 8134606 -93738563 + L2 LINE L2 3262 3312 -1 239 304 72 0 chr13 8135369 8135438 -93737731 - MIR3 SINE MIR -26 182 109 180 77 0 0 chr13 8136034 8136060 -93737109 + (TTCCC)n Simple_repeat Simple_repeat 2 27 0 299 308 76 22 chr13 8136176 8136373 -93736796 - MIR SINE MIR -54 208 4 1577 174 0 71 chr13 8138528 8138838 -93734331 - AluJo SINE Alu -23 289 2 1800 135 35 7 chr13 8139567 8139849 -93733320 + AluJb SINE Alu 21 310 -2 2232 103 3 22 chr13 8140087 8140398 -93732771 + AluSg SINE Alu 1 305 -5 2317 181 42 2 chr13 8142970 8143400 -93729769 - MLT1C LTR MaLR 0 467 21 2671 102 6 3 chr13 8143439 8143801 -93729368 + THE1B LTR MaLR 1 363 -1 2368 76 0 10 chr13 8144003 8144306 -93728863 + AluY SINE Alu 1 300 -11 2318 95 10 0 chr13 8144482 8144777 -93728392 - AluSq SINE Alu -15 298 1 341 333 26 19 chr13 8145193 8145349 -93727820 + L2 LINE L2 3116 3272 0 842 161 0 0 chr13 8145469 8145593 -93727576 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr13 8145599 8145623 -93727546 + AT_rich Low_complexity Low_complexity 1 24 0 689 221 0 0 chr13 8147572 8147712 -93725457 + Tigger4(Zombi) DNA MER2_type 1 140 -2591 1504 125 141 4 chr13 8148328 8148584 -93724585 + AluJo SINE Alu 1 291 -21 438 305 155 29 chr13 8148901 8149504 -93723665 + L2 LINE L2 2632 3311 -2 1701 175 53 50 chr13 8149810 8150170 -93722999 + MER46B DNA MER2_type 1 236 0 2387 97 0 3 chr13 8150516 8150826 -93722343 + AluSq SINE Alu 1 309 -4 2125 115 0 26 chr13 8151602 8151906 -93721263 - AluSx SINE Alu -16 296 1 310 230 204 102 chr13 8152069 8152295 -93720874 + MIR SINE MIR 2 250 -12 403 325 76 30 chr13 8153173 8153410 -93719759 + MIR SINE MIR 9 256 -6 210 373 31 6 chr13 8153473 8153634 -93719535 - L2 LINE L2 -237 3035 2871 288 300 71 36 chr13 8153769 8153909 -93719260 - MIR SINE MIR -26 236 92 2041 170 84 5 chr13 8154189 8154583 -93718586 - MSTB LTR MaLR -1 425 1 204 200 0 0 chr13 8156076 8156131 -93717038 + T-rich Low_complexity Low_complexity 1 55 0 2416 63 0 0 chr13 8156322 8156623 -93716546 + AluY SINE Alu 4 304 -7 22 35 0 0 chr13 8156668 8156697 -93716472 + AT_rich Low_complexity Low_complexity 1 29 0 2133 117 0 0 chr13 8157594 8157894 -93715275 - AluSx SINE Alu -12 300 1 276 283 198 6 chr13 8159531 8159708 -93713461 + MIR SINE MIR 13 223 -39 344 266 99 17 chr13 8160856 8161077 -93712092 - L1ME2 LINE L1 -298 5866 5629 574 237 84 42 chr13 8161082 8161177 -93711992 - L1ME2 LINE L1 -913 5233 5143 2017 114 0 7 chr13 8161177 8161475 -93711694 - AluSx SINE Alu -16 296 1 574 237 84 42 chr13 8161475 8161641 -93711528 - L1ME2 LINE L1 -1003 5143 4961 1824 179 33 15 chr13 8162063 8162399 -93710770 + MER7A DNA MER2_type 2 341 -5 2019 104 35 0 chr13 8162977 8163266 -93709903 + AluSx SINE Alu 1 299 -13 1316 163 26 0 chr13 8163275 8163502 -93709667 + 7SLRNA srpRNA srpRNA 51 283 -37 26 0 0 0 chr13 8163521 8163547 -93709622 + AT_rich Low_complexity Low_complexity 1 26 0 468 277 54 14 chr13 8163570 8163718 -93709451 + MIR SINE MIR 24 177 -85 442 264 98 31 chr13 8164797 8164960 -93708209 - MIR SINE MIR -87 175 2 2138 115 0 0 chr13 8165494 8165799 -93707370 - AluSx SINE Alu -7 305 1 749 209 173 5 chr13 8167091 8167282 -93705887 - MIR SINE MIR -4 258 36 1158 256 33 39 chr13 8167287 8167650 -93705519 + MLT1A2 LTR MaLR 1 361 -13 1987 134 0 0 chr13 8168559 8168851 -93704318 - AluSx SINE Alu -20 292 1 23 0 0 0 chr13 8169431 8169454 -93703715 + AT_rich Low_complexity Low_complexity 1 23 0 550 176 0 0 chr13 8169471 8169573 -93703596 - HY1 scRNA scRNA -10 102 1 2690 223 55 18 chr13 8169711 8170379 -93702790 + L1ME2 LINE L1 5456 6148 -16 1459 179 36 17 chr13 8171122 8171423 -93701746 - AluJo SINE Alu -5 307 1 216 0 0 0 chr13 8172274 8172298 -93700871 + (A)n Simple_repeat Simple_repeat 1 24 0 12386 88 9 2 chr13 8172310 8173898 -93699271 + L1PA7 LINE L1 8 1606 -4855 16670 89 5 41 chr13 8173898 8177063 -93696106 + L1PA7 LINE L1 3338 6469 0 280 75 132 0 chr13 8177655 8177708 -93695461 - L1MA4A LINE L1 -5 6298 6239 401 296 68 14 chr13 8178460 8178680 -93694489 - L1ME4a LINE L1 -296 5825 5594 1002 197 0 5 chr13 8180613 8180806 -93692363 + AluJo SINE Alu 121 312 0 2339 84 0 3 chr13 8181865 8182175 -93690994 + AluSc SINE Alu 1 309 0 2145 99 3 3 chr13 8183629 8183922 -93689247 + AluSx SINE Alu 1 293 -19 184 311 94 28 chr13 8188473 8188579 -93684590 - L2 LINE L2 -2 3311 3199 300 269 180 30 chr13 8189281 8189448 -93683721 + MIR SINE MIR 40 231 -31 352 227 118 36 chr13 8192831 8192941 -93680228 + MIR SINE MIR 16 134 -74 2267 62 0 29 chr13 8194043 8194349 -93678820 + AluY SINE Alu 1 297 -14 382 269 32 118 chr13 8194351 8194819 -93678350 - L1MC5 LINE L1 -32 7929 7502 592 224 8 8 chr13 8194826 8194974 -93678195 - FLAM_A SINE Alu 0 142 6 218 259 24 35 chr13 8195077 8195162 -93678007 - MIR SINE MIR -62 146 63 2068 95 0 11 chr13 8195532 8195778 -93677391 - AluSg1 SINE Alu 0 305 61 180 0 0 0 chr13 8195778 8195798 -93677371 + (CCCCCA)n Simple_repeat Simple_repeat 2 21 0 2068 95 0 11 chr13 8195798 8195859 -93677310 - AluSg1 SINE Alu -244 61 1 231 36 0 0 chr13 8196382 8196410 -93676759 + (TTG)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr13 8196424 8196455 -93676714 + AT_rich Low_complexity Low_complexity 1 31 0 2326 48 3 0 chr13 8197411 8197701 -93675468 + AluY SINE Alu 1 291 -20 1864 203 60 21 chr13 8198605 8199039 -93674130 - MER39 LTR ERV1 0 707 257 298 136 17 71 chr13 8199012 8199113 -93674056 - MER39 LTR ERV1 -560 93 1 * 250 311 189 5 chr13 8199113 8199303 -93673866 - L2 LINE L2 -285 3028 2804 1018 184 0 6 chr13 8199476 8199650 -93673519 + FAM SINE Alu 1 173 -2 26 50 0 0 chr13 8200393 8200433 -93672736 + AT_rich Low_complexity Low_complexity 1 40 0 24 96 0 0 chr13 8200596 8200669 -93672500 + AT_rich Low_complexity Low_complexity 1 73 0 1816 136 0 14 chr13 8202704 8202999 -93670170 + AluJo SINE Alu 3 293 -19 2087 144 20 0 chr13 8203073 8203379 -93669790 + AluSx SINE Alu 1 312 0 262 306 48 43 chr13 8204187 8204373 -93668796 - MLT1L LTR MaLR 0 615 429 4612 133 22 13 chr13 8204812 8205587 -93667582 - L1MA9 LINE L1 0 6312 5531 21 36 0 0 chr13 8205784 8205812 -93667357 + AT_rich Low_complexity Low_complexity 1 28 0 806 238 161 45 chr13 8208937 8209383 -93663786 - L2 LINE L2 -1 3312 2815 3132 162 34 35 chr13 8210005 8210654 -93662515 - L1MD1 LINE L1 0 6636 5989 338 174 29 14 chr13 8210679 8210748 -93662421 - MLT1H LTR MaLR -54 495 426 505 113 12 0 chr13 8210766 8210846 -93662323 - L1MB7 LINE L1 -21 6163 6083 * 8449 219 46 81 chr13 8210839 8211440 -93661729 - L1MD1 LINE L1 -627 6009 5389 5257 9 0 0 chr13 8211440 8212019 -93661150 - L1PA2 LINE L1 -1 6154 5576 8449 219 46 81 chr13 8212019 8215056 -93658113 - L1MD1 LINE L1 -1247 5389 2504 5091 205 122 40 chr13 8215083 8215268 -93657901 - L1MD1 LINE L1 -4338 2202 2034 2121 127 0 13 chr13 8215268 8215444 -93657725 - AluSx SINE Alu -4 308 136 2283 110 0 0 chr13 8215444 8215735 -93657434 - AluSx SINE Alu -21 291 1 2121 127 0 13 chr13 8215735 8215866 -93657303 - AluSx SINE Alu -176 136 5 5091 205 122 40 chr13 8215866 8217336 -93655833 - L1MD1 LINE L1 -4506 2034 258 221 273 182 0 chr13 8218399 8218498 -93654671 + L2 LINE L2 3153 3269 -3 23 0 0 0 chr13 8219452 8219475 -93653694 + AT_rich Low_complexity Low_complexity 1 23 0 3967 185 51 30 chr13 8219617 8220747 -93652422 - L1MB5 LINE L1 -6 6168 5009 1196 154 24 12 chr13 8220751 8220997 -93652172 - L1MA7 LINE L1 0 6291 6043 2550 70 9 0 chr13 8220997 8221327 -93651842 + L1PA6 LINE L1 5821 6154 0 11831 165 43 9 chr13 8221327 8221600 -93651569 - L1MA7 LINE L1 -233 6058 5796 438 20 0 0 chr13 8221600 8221651 -93651518 + (TG)n Simple_repeat Simple_repeat 2 52 0 11831 165 43 9 chr13 8221651 8224404 -93648765 - L1MA7 LINE L1 -495 5796 2930 4683 224 31 27 chr13 8224405 8225680 -93647489 - L1MB5 LINE L1 -1130 5016 3737 307 289 110 46 chr13 8226330 8226676 -93646493 + L1MEd LINE L1 18 385 -5734 21 57 0 0 chr13 8227857 8227892 -93645277 + AT_rich Low_complexity Low_complexity 1 35 0 1335 280 112 27 chr13 8227909 8228501 -93644668 - MER115 DNA AcHobo -1 692 51 2258 110 3 0 chr13 8228535 8228835 -93644334 + AluSx SINE Alu 1 301 -11 233 351 30 8 chr13 8228911 8229042 -93644127 + MIR3 SINE MIR 64 197 -11 2077 168 37 0 chr13 8229896 8230270 -93642899 - MLT1B LTR MaLR 0 390 3 1928 149 7 14 chr13 8230403 8230699 -93642470 + AluJo SINE Alu 1 294 -18 248 308 17 0 chr13 8231382 8231499 -93641670 + G-rich Low_complexity Low_complexity 1 119 0 2290 117 3 0 chr13 8232144 8232453 -93640716 + AluSq SINE Alu 1 310 -3 438 229 208 0 chr13 8232870 8232982 -93640187 + MIR SINE MIR 31 118 -144 2192 187 17 17 chr13 8232982 8233441 -93639728 - LOR1b LTR ERV1 -2 459 1 438 229 208 0 chr13 8233441 8233520 -93639649 + MIR SINE MIR 118 262 0 191 368 80 6 chr13 8233522 8233685 -93639484 + MIR SINE MIR 66 240 -22 281 294 64 53 chr13 8235603 8235790 -93637379 - MIR3 SINE MIR -12 196 8 210 37 0 0 chr13 8236742 8236769 -93636400 + (TTCTG)n Simple_repeat Simple_repeat 3 29 0 764 196 82 23 chr13 8237472 8237691 -93635478 + MIR SINE MIR 31 262 0 2176 118 0 10 chr13 8237863 8238159 -93635010 + AluSx SINE Alu 1 293 -19 261 139 0 0 chr13 8243893 8243936 -93629233 + (A)n Simple_repeat Simple_repeat 1 43 0 195 289 0 125 chr13 8245897 8245951 -93627218 + L3 LINE CR1 1480 1539 -38 1071 197 51 91 chr13 8245951 8246124 -93627045 + MER58B DNA MER1_type 2 180 -2240 2458 53 3 41 chr13 8246124 8246443 -93626726 + AluY SINE Alu 1 307 -4 1071 197 51 91 chr13 8246443 8246579 -93626590 + MER58B DNA MER1_type 180 298 -2122 1689 157 3 39 chr13 8246579 8246891 -93626278 - AluJo SINE Alu -11 301 1 1071 197 51 91 chr13 8246891 8246930 -93626239 + MER58B DNA MER1_type 298 337 -4 195 289 0 125 chr13 8246930 8246979 -93626190 + L3 LINE CR1 1539 1570 -7 1962 134 13 10 chr13 8248497 8248804 -93624365 + AluSx SINE Alu 1 308 -4 2198 121 0 0 chr13 8250561 8250858 -93622311 + AluSx SINE Alu 1 297 -15 342 0 0 0 chr13 8252404 8252442 -93620727 + (CA)n Simple_repeat Simple_repeat 2 39 0 1321 163 65 0 chr13 8254045 8254142 -93619027 - AluJo SINE Alu -83 229 140 423 0 0 0 chr13 8254142 8254189 -93618980 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1321 163 65 0 chr13 8254189 8254306 -93618863 - AluJo SINE Alu -172 140 1 648 191 63 74 chr13 8254555 8254695 -93618474 + MER5A DNA MER1_type 1 140 -49 2065 146 0 0 chr13 8254695 8254997 -93618172 - AluJb SINE Alu -10 302 1 648 191 63 74 chr13 8254997 8255045 -93618124 + MER5A DNA MER1_type 140 187 -2 4059 128 44 23 chr13 8256098 8256216 -93616953 - L1MA4 LINE L1 -5 6295 6181 2216 115 3 0 chr13 8256216 8256520 -93616649 - AluSg SINE Alu -5 305 1 4059 128 44 23 chr13 8256520 8257086 -93616083 - L1MA4 LINE L1 -119 6181 5597 198 188 0 0 chr13 8257094 8257126 -93616043 - MIR SINE MIR -10 252 221 2280 95 0 7 chr13 8257587 8257881 -93615288 + AluSg SINE Alu 1 292 -18 394 271 54 8 chr13 8258880 8259009 -93614160 - L2 LINE L2 -52 3261 3127 354 366 21 7 chr13 8259557 8259699 -93613470 + MIR SINE MIR 22 165 -97 2342 162 80 2 chr13 8259891 8260329 -93612840 - LOR1a LTR ERV1 -25 472 1 2039 120 28 0 chr13 8260391 8260674 -93612495 - AluSq SINE Alu -22 291 1 584 128 43 11 chr13 8260706 8260800 -93612369 - LTR12 LTR ERV1 -229 485 389 329 147 59 88 chr13 8260800 8260902 -93612267 - LTR30 LTR ERV1 -79 643 379 528 206 39 25 chr13 8260903 8261104 -93612065 - LTR12 LTR ERV1 -429 1475 96 247 250 0 0 chr13 8261104 8261156 -93612013 - LTR30 LTR ERV1 -670 52 1 227 301 204 0 chr13 8261202 8261295 -93611874 - L2 LINE L2 -38 3234 3123 394 146 0 0 chr13 8261309 8261377 -93611792 - MLT1G1 LTR MaLR -6 589 476 794 194 0 8 chr13 8261388 8261522 -93611647 + FLAM_A SINE Alu 1 133 0 2667 161 60 39 chr13 8261531 8262101 -93611068 + L1MB3 LINE L1 5595 6176 -7 758 245 155 49 chr13 8262104 8262222 -93610947 - MLT1H1 LTR MaLR -55 540 436 1227 213 135 27 chr13 8262222 8262556 -93610613 + MLT1A2 LTR MaLR 1 370 -4 758 245 155 49 chr13 8262556 8262884 -93610285 - MLT1H1 LTR MaLR -159 436 3 2172 114 0 63 chr13 8263512 8263844 -93609325 - AluSq SINE Alu -2 311 1 1880 185 73 0 chr13 8264457 8264797 -93608372 - MER47A DNA MER2_type 0 366 2 225 280 75 65 chr13 8264869 8264962 -93608207 - L2 LINE L2 -33 3239 3146 2047 138 7 0 chr13 8265181 8265478 -93607691 + AluSq SINE Alu 1 299 -14 205 278 139 78 chr13 8265610 8265790 -93607379 - MIR SINE MIR -49 213 23 1647 170 0 55 chr13 8265813 8266125 -93607044 + AluJo SINE Alu 1 295 -17 432 228 304 35 chr13 8266391 8266887 -93606282 + LTR50 LTR ERVL 1 758 -37 233 176 77 66 chr13 8266892 8266983 -93606186 + L1ME LINE L1 5582 5673 -497 1442 103 0 10 chr13 8266989 8267216 -93605953 - AluSq SINE Alu 0 317 93 268 250 0 0 chr13 8267380 8267432 -93605737 + L1ME2 LINE L1 6097 6148 -16 1071 167 162 9 chr13 8267456 8267666 -93605503 + AluY SINE Alu 44 285 -26 1570 162 42 7 chr13 8267697 8267981 -93605188 + AluJb SINE Alu 1 294 -18 2515 80 0 0 chr13 8269406 8269717 -93603452 - AluSx SINE Alu -1 311 1 243 0 0 0 chr13 8269906 8269933 -93603236 + (GA)n Simple_repeat Simple_repeat 2 28 0 759 156 0 0 chr13 8271071 8271203 -93601966 + FRAM SINE Alu 38 169 0 433 235 154 15 chr13 8271999 8272135 -93601034 + MIR3 SINE MIR 34 188 -20 285 355 13 26 chr13 8272477 8272632 -93600537 - L2 LINE L2 -2 3311 3159 641 243 0 0 chr13 8272835 8272971 -93600198 - MIR SINE MIR -5 257 122 24 32 0 0 chr13 8274216 8274247 -93598922 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr13 8274618 8274649 -93598520 + AT_rich Low_complexity Low_complexity 1 31 0 3603 166 35 12 chr13 8275012 8275748 -93597421 + L1MB5 LINE L1 5223 5972 -212 764 171 8 16 chr13 8275748 8275871 -93597298 + FLAM_C SINE Alu 1 122 -21 984 157 120 0 chr13 8275882 8276073 -93597096 + L1MB5 LINE L1 5961 6174 0 637 159 146 13 chr13 8276290 8276441 -93596728 + MLT1B LTR MaLR 1 171 -219 191 268 0 163 chr13 8276756 8276830 -93596339 + L2 LINE L2 3179 3217 -96 1654 158 49 3 chr13 8276830 8277115 -93596054 - AluJo SINE Alu -14 298 1 191 268 0 163 chr13 8277115 8277193 -93595976 + L2 LINE L2 3217 3306 -7 * 306 163 0 0 chr13 8277163 8277212 -93595957 - L2 LINE L2 -1 3312 3264 1956 125 24 7 chr13 8277366 8277653 -93595516 + AluSx SINE Alu 10 301 -11 25 31 0 0 chr13 8278208 8278240 -93594929 + AT_rich Low_complexity Low_complexity 1 32 0 272 242 0 16 chr13 8279036 8279098 -93594071 - MIR SINE MIR -2 260 200 216 0 0 0 chr13 8279981 8280005 -93593164 + (ATG)n Simple_repeat Simple_repeat 2 25 0 2064 117 11 3 chr13 8280005 8280287 -93592882 - AluSx SINE Alu -28 284 1 1978 125 35 0 chr13 8283236 8283524 -93589645 + AluSg SINE Alu 1 298 -12 1973 127 0 3 chr13 8284009 8284334 -93588835 - AluSx SINE Alu 0 326 3 713 198 0 0 chr13 8284561 8284677 -93588492 - FLAM_A SINE Alu -19 123 8 214 313 214 10 chr13 8286750 8286942 -93586227 - L2 LINE L2 -1 3312 3082 1341 280 123 23 chr13 8289820 8290485 -93582684 + HAL1 LINE L1 1619 2350 -157 1219 169 9 144 chr13 8290791 8291139 -93582030 + AluJo SINE Alu 2 302 0 494 193 17 8 chr13 8292418 8292605 -93580564 - MER8 DNA MER2_type 0 239 8 1419 181 11 22 chr13 8293156 8293433 -93579736 + AluJb SINE Alu 33 306 -6 1559 170 30 22 chr13 8293657 8293927 -93579242 + AluSx SINE Alu 1 272 -40 22 35 0 0 chr13 8295065 8295094 -93578075 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr13 8295524 8295552 -93577617 + AT_rich Low_complexity Low_complexity 1 28 0 2426 72 0 28 chr13 8295864 8296184 -93576985 - AluY SINE Alu 0 311 1 514 238 159 9 chr13 8296185 8296399 -93576770 - L1M4 LINE L1 -3744 2402 2157 243 192 0 39 chr13 8296573 8296625 -93576544 - MER3 DNA MER1_type 0 209 160 2752 238 31 14 chr13 8297080 8297789 -93575380 + MER54A LTR ERVL 179 899 -2 435 216 22 3 chr13 8297790 8297895 -93575274 - L1ME1 LINE L1 -332 5834 5737 440 272 6 31 chr13 8297953 8298115 -93575054 - L1ME1 LINE L1 -413 5753 5596 201 39 0 0 chr13 8298121 8298147 -93575022 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1330 235 129 56 chr13 8298255 8298547 -93574622 - L1ME3A LINE L1 -135 6035 5766 1647 186 0 20 chr13 8298547 8298848 -93574321 - AluJo SINE Alu -16 296 2 1330 235 129 56 chr13 8298848 8299199 -93573970 - L1ME3A LINE L1 -404 5766 5319 736 245 108 58 chr13 8299240 8299446 -93573723 - L1ME3A LINE L1 -2828 3318 3124 1647 189 3 3 chr13 8299446 8299747 -93573422 - AluJb SINE Alu -11 301 1 736 245 108 58 chr13 8299747 8300079 -93573090 - L1ME3A LINE L1 -3022 3124 2753 736 197 0 8 chr13 8300538 8300665 -93572504 - FLAM_C SINE Alu -16 127 2 200 308 0 33 chr13 8300914 8301005 -93572164 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 2185 103 31 0 chr13 8301020 8301311 -93571858 - AluSc SINE Alu -9 300 1 357 168 107 92 chr13 8301315 8301446 -93571723 - L1MC4a LINE L1 -1869 5939 5807 1163 254 84 25 chr13 8301649 8302108 -93571061 + MLT1H1 LTR MaLR 2 452 -103 486 221 64 7 chr13 8302258 8302398 -93570771 - MIR SINE MIR -98 164 17 2132 113 0 0 chr13 8302540 8302833 -93570336 + AluJb SINE Alu 1 293 -19 1931 127 74 0 chr13 8302901 8303185 -93569984 + AluSx SINE Alu 3 307 -5 34 0 0 0 chr13 8303873 8303907 -93569262 + AT_rich Low_complexity Low_complexity 1 34 0 1630 190 80 131 chr13 8305144 8305579 -93567590 - L1MC4 LINE L1 -89 7953 7560 1875 136 26 19 chr13 8305579 8305887 -93567282 - AluJb SINE Alu -2 310 1 1630 190 80 131 chr13 8305887 8306092 -93567077 - L1MC4 LINE L1 -482 7560 7346 1594 180 0 33 chr13 8306716 8307016 -93566153 - AluJo SINE Alu -22 290 1 35 41 0 0 chr13 8309584 8309633 -93563536 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr13 8309691 8309712 -93563457 + AT_rich Low_complexity Low_complexity 1 21 0 829 315 15 11 chr13 8310677 8310937 -93562232 + MIR SINE MIR 1 261 -1 2194 138 0 0 chr13 8311131 8311435 -93561734 - AluSx SINE Alu -8 304 1 3186 182 35 12 chr13 8311706 8312542 -93560627 + L1MB4 LINE L1 5259 6179 -1 613 264 80 45 chr13 8312977 8313300 -93559869 - L1MEd LINE L1 -4873 1246 1003 2248 115 0 7 chr13 8313300 8313605 -93559564 - AluSx SINE Alu -9 303 1 613 264 80 45 chr13 8313605 8313684 -93559485 - L1MEd LINE L1 -5116 1003 928 195 129 0 0 chr13 8313684 8313715 -93559454 + (TA)n Simple_repeat Simple_repeat 1 31 0 333 224 24 0 chr13 8313717 8313802 -93559367 - L1MC4 LINE L1 -1342 6700 6614 1923 113 30 0 chr13 8313809 8314075 -93559094 - AluSx SINE Alu -38 274 1 280 394 83 19 chr13 8314311 8314674 -93558495 - L2 LINE L2 -4 3268 2883 25 51 0 0 chr13 8314759 8314798 -93558371 + AT_rich Low_complexity Low_complexity 1 39 0 237 132 0 0 chr13 8315314 8315352 -93557817 + (A)n Simple_repeat Simple_repeat 1 38 0 2307 105 0 0 chr13 8315387 8315683 -93557486 + AluSx SINE Alu 1 296 -16 201 147 0 0 chr13 8316865 8316899 -93556270 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 1508 190 28 24 chr13 8317177 8317243 -93555926 + MER45B DNA AcHobo 38 102 -938 2154 104 20 7 chr13 8317243 8317541 -93555628 - AluSq SINE Alu -11 302 1 1508 190 28 24 chr13 8317541 8317763 -93555406 + MER45B DNA AcHobo 102 327 -713 573 128 12 0 chr13 8317763 8317849 -93555320 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 8317849 8318037 -93555132 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 8318039 8318139 -93555030 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 8319454 8319498 -93553671 + A-rich Low_complexity Low_complexity 1 47 0 498 332 94 0 chr13 8319762 8319985 -93553184 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 8320098 8320136 -93553033 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 8320283 8320517 -93552652 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 8320517 8320813 -93552356 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 8320813 8321021 -93552148 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 8321051 8321364 -93551805 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 8322137 8322187 -93550982 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 8322569 8322865 -93550304 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 8323570 8323690 -93549479 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 8323690 8323942 -93549227 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 8323942 8324089 -93549080 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 8324755 8324934 -93548235 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 8324936 8325480 -93547689 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 8327504 8327583 -93545586 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 8328314 8328621 -93544548 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 8328920 8329092 -93544077 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 8329474 8329572 -93543597 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 8330467 8330513 -93542656 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 8333003 8333182 -93539987 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 8333196 8333316 -93539853 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 8333318 8333388 -93539781 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 8333510 8333818 -93539351 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 8334284 8334363 -93538806 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 8334444 8334649 -93538520 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 8334699 8334786 -93538383 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 8335630 8335675 -93537494 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 8337405 8337493 -93535676 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 8339508 8339746 -93533423 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 8340474 8340561 -93532608 - L2 LINE L2 0 3313 3204 194 361 74 9 chr13 8340617 8340725 -93532444 + L2 LINE L2 3118 3232 -40 25 51 0 0 chr13 8341557 8341596 -93531573 + AT_rich Low_complexity Low_complexity 1 39 0 2370 100 0 0 chr13 8341761 8342060 -93531109 + AluSc SINE Alu 1 299 -10 2157 146 17 14 chr13 8342220 8342577 -93530592 - L1MB7 LINE L1 -9 6175 5818 813 273 174 28 chr13 8342668 8343064 -93530105 - LTR16A1 LTR ERVL -1 456 3 2699 306 77 43 chr13 8343148 8345494 -93527675 - ERVL LTR ERVL -90 4906 2808 371 236 47 8 chr13 8345526 8345653 -93527516 - Charlie5 DNA MER1_type -85 2527 2396 23 33 0 0 chr13 8347376 8347406 -93525763 + AT_rich Low_complexity Low_complexity 1 30 0 2487 59 0 34 chr13 8347972 8348294 -93524875 - AluY SINE Alu 0 311 1 205 170 57 38 chr13 8348474 8348527 -93524642 + L2 LINE L2 3207 3260 -12 2139 142 3 0 chr13 8348763 8349073 -93524096 + AluSx SINE Alu 1 311 -1 467 209 35 61 chr13 8350027 8350142 -93523027 + FLAM_A SINE Alu 3 114 -19 21 0 0 0 chr13 8350145 8350166 -93523003 + AT_rich Low_complexity Low_complexity 1 21 0 284 312 72 0 chr13 8350714 8350839 -93522330 + L2 LINE L2 3168 3301 -12 1642 120 84 22 chr13 8350965 8351239 -93521930 + AluSq SINE Alu 1 291 -22 216 343 135 19 chr13 8351525 8351732 -93521437 + L2 LINE L2 2127 2357 -957 1128 276 138 29 chr13 8352698 8353248 -93519921 - MLT1L LTR MaLR -3 612 3 265 217 42 25 chr13 8353257 8353377 -93519792 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 26 0 0 0 chr13 8353415 8353441 -93519728 + AT_rich Low_complexity Low_complexity 1 26 0 1747 136 0 0 chr13 8353514 8353757 -93519412 + AluSx SINE Alu 1 243 -69 638 135 0 0 chr13 8353757 8353846 -93519323 - AluS SINE Alu -222 90 2 363 265 44 37 chr13 8353885 8354021 -93519148 + L1ME LINE L1 5672 5808 -313 1912 264 39 34 chr13 8354459 8355047 -93518122 - MLT1E LTR MaLR -2 591 1 410 308 65 55 chr13 8355924 8356232 -93516937 + MLT1J2 LTR MaLR 21 331 -119 1844 142 7 4 chr13 8356818 8357092 -93516077 + AluSq SINE Alu 31 305 -8 1893 164 0 3 chr13 8357417 8357731 -93515438 - AluJb SINE Alu 0 312 1 586 266 0 0 chr13 8358325 8358438 -93514731 - MER81 DNA DNA -1 113 1 1890 138 20 20 chr13 8358565 8358862 -93514307 + AluJo SINE Alu 1 297 -15 2409 53 0 0 chr13 8359805 8360130 -93513039 - AluY SINE Alu 0 325 1 691 312 118 30 chr13 8360621 8361265 -93511904 - L1ME4a LINE L1 -96 6025 5314 1726 228 64 67 chr13 8362152 8362842 -93510327 - L1ME4a LINE L1 -1099 5047 4360 * 7061 241 73 43 chr13 8362833 8363164 -93510005 - L1MEc LINE L1 -1542 4673 4353 1899 185 10 31 chr13 8363164 8363554 -93509615 - L1MB7 LINE L1 0 6184 5803 7061 241 73 43 chr13 8363554 8363798 -93509371 - L1MEc LINE L1 -1862 4353 4118 2036 100 57 0 chr13 8363798 8364077 -93509092 - AluY SINE Alu -16 295 1 7061 241 73 43 chr13 8364077 8365784 -93507385 - L1MEc LINE L1 -2097 4118 2463 599 169 16 0 chr13 8365784 8365908 -93507261 - L1MB2 LINE L1 -2 6169 6044 7061 241 73 43 chr13 8365908 8366070 -93507099 - L1MEc LINE L1 -3752 2463 2307 1808 161 0 7 chr13 8366070 8366356 -93506813 - AluSx SINE Alu -26 286 3 7061 241 73 43 chr13 8366356 8367849 -93505320 - L1MEc LINE L1 -3908 2307 656 740 132 8 0 chr13 8367881 8367898 -93505271 - L1MB7 LINE L1 -309 5875 5860 1626 119 5 0 chr13 8367898 8368117 -93505052 + AluSg/x SINE Alu 73 292 -20 740 132 8 0 chr13 8368117 8368233 -93504936 - L1MB7 LINE L1 -324 5860 5759 244 281 173 43 chr13 8369624 8369763 -93503406 - MER5B DNA MER1_type -1 177 21 300 207 12 73 chr13 8370553 8370635 -93502534 + MER5B DNA MER1_type 2 78 -100 440 199 53 53 chr13 8370666 8370757 -93502412 - MER5A DNA MER1_type -58 131 38 4269 119 39 2 chr13 8370757 8371369 -93501800 + MER41B LTR ERV1 1 635 0 440 199 53 53 chr13 8371369 8371408 -93501761 - MER5A DNA MER1_type -150 39 1 210 179 26 0 chr13 8371475 8371514 -93501655 + CT-rich Low_complexity Low_complexity 1 40 0 2263 97 3 0 chr13 8371839 8372129 -93501040 - AluSx SINE Alu -21 291 1 806 185 23 0 chr13 8372452 8372625 -93500544 + MER69 DNA AcHobo 2344 2520 -6 283 262 78 48 chr13 8373533 8373636 -93499533 - MIR SINE MIR -80 128 23 432 284 12 8 chr13 8373640 8373772 -93499397 + MIR SINE MIR 13 147 -62 4530 259 103 27 chr13 8374010 8375835 -93497334 - L2 LINE L2 -1 3312 1357 1447 176 68 3 chr13 8376681 8376988 -93496181 - L1MB3 LINE L1 0 6183 5857 2131 138 0 0 chr13 8377294 8377591 -93495578 + AluSx SINE Alu 1 297 -15 13984 132 23 121 chr13 8377601 8378493 -93494676 + L1P LINE L1 12 990 -5156 2463 28 42 0 chr13 8378493 8378782 -93494387 + AluY SINE Alu 2 302 -9 13984 132 23 121 chr13 8378782 8381027 -93492142 + L1P LINE L1 990 2842 -3304 812 87 0 0 chr13 8381027 8381130 -93492039 - AluSq/x SINE Alu -210 103 1 197 159 43 14 chr13 8381365 8381434 -93491735 + (TA)n Simple_repeat Simple_repeat 2 72 0 212 332 75 83 chr13 8381946 8382344 -93490825 + L2 LINE L2 2872 3266 -6 529 169 12 0 chr13 8382820 8382903 -93490266 + AluJ/FLAM SINE Alu 1 84 -228 794 249 98 87 chr13 8382908 8383358 -93489811 + L2 LINE L2 2691 3134 -179 207 0 0 0 chr13 8383358 8383381 -93489788 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2287 102 0 3 chr13 8383383 8383677 -93489492 - AluSq SINE Alu -20 293 1 794 249 98 87 chr13 8383677 8383818 -93489351 + L2 LINE L2 3134 3300 -13 280 293 9 66 chr13 8383896 8384002 -93489167 + MIR SINE MIR 8 107 -155 7853 41 2 2 chr13 8384201 8385167 -93488002 + L1PA5 LINE L1 5191 6153 -1 408 231 192 51 chr13 8385339 8385418 -93487751 - MIR SINE MIR -22 240 173 1857 143 32 0 chr13 8385418 8385698 -93487471 - AluJo SINE Alu -9 303 15 408 231 192 51 chr13 8385698 8385774 -93487395 - MIR SINE MIR -89 173 63 188 319 201 59 chr13 8386827 8387081 -93486088 - L2 LINE L2 0 3272 2983 1972 132 0 23 chr13 8387223 8387526 -93485643 + AluSx SINE Alu 1 296 -16 2109 110 48 0 chr13 8388418 8388709 -93484460 - AluSq SINE Alu -8 305 1 635 280 108 26 chr13 8388756 8388988 -93484181 - MIR SINE MIR -3 259 9 257 271 66 66 chr13 8389932 8390083 -93483086 - L2 LINE L2 -2 3311 3161 558 0 0 0 chr13 8390109 8390171 -93482998 + (TATTG)n Simple_repeat Simple_repeat 5 66 0 1974 154 3 0 chr13 8390171 8390456 -93482713 - AluSx SINE Alu -26 286 1 324 232 111 0 chr13 8390972 8391071 -93482098 - MIR3 SINE MIR -41 167 58 183 80 0 0 chr13 8391474 8391499 -93481670 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2346 81 0 3 chr13 8391722 8392018 -93481151 - AluY SINE Alu -16 295 1 1921 66 49 0 chr13 8393251 8393494 -93479675 + AluY SINE Alu 45 299 -12 513 315 81 20 chr13 8393651 8394024 -93479145 - L2 LINE L2 -184 3088 2680 2027 101 0 7 chr13 8395155 8395431 -93477738 + AluSc SINE Alu 1 274 -35 1329 158 0 0 chr13 8395673 8395876 -93477293 - AluSg/x SINE Alu -39 273 71 890 127 35 0 chr13 8395910 8396052 -93477117 - FRAM SINE Alu -4 172 26 1165 170 106 13 chr13 8396060 8396295 -93476874 + AluJo SINE Alu 46 302 -10 372 240 173 61 chr13 8396923 8397235 -93475934 + L1MEd LINE L1 598 944 -5175 1883 109 30 8 chr13 8397247 8397514 -93475655 + AluSx SINE Alu 2 274 -38 269 218 23 23 chr13 8397515 8397602 -93475567 + L1MC4 LINE L1 6616 6702 -1340 619 265 81 42 chr13 8397617 8397696 -93475473 + L1MEd LINE L1 928 1003 -5263 2298 115 0 6 chr13 8397696 8398009 -93475160 + AluSx SINE Alu 1 311 -1 619 265 81 42 chr13 8398009 8398331 -93474838 + L1MEd LINE L1 1003 1393 -4873 3287 179 31 5 chr13 8398766 8399379 -93473790 - L1MB4 LINE L1 -1 6179 5551 1049 172 45 32 chr13 8399381 8399602 -93473567 - L1MB4 LINE L1 -698 5482 5259 2194 138 0 0 chr13 8399873 8400177 -93472992 + AluSx SINE Alu 1 304 -8 829 315 15 11 chr13 8400371 8400631 -93472538 - MIR SINE MIR -1 261 1 475 257 29 15 chr13 8401786 8401922 -93471247 + MIR SINE MIR 32 169 -93 31 18 0 53 chr13 8402051 8402076 -93471093 + AT_rich Low_complexity Low_complexity 1 26 -28 1941 149 0 0 chr13 8402076 8402365 -93470804 - AluSx SINE Alu -23 289 1 31 18 0 53 chr13 8402365 8402396 -93470773 + AT_rich Low_complexity Low_complexity 26 54 0 2262 106 0 0 chr13 8402929 8403221 -93469948 + AluSx SINE Alu 1 292 -20 22 35 0 0 chr13 8403394 8403423 -93469746 + AT_rich Low_complexity Low_complexity 1 29 0 2304 92 0 3 chr13 8403799 8404093 -93469076 - AluSx SINE Alu -19 293 1 288 320 86 68 chr13 8404245 8404642 -93468527 + L2 LINE L2 2829 3232 -40 219 109 22 22 chr13 8404798 8404844 -93468325 + A-rich Low_complexity Low_complexity 2 47 0 2359 45 3 58 chr13 8404918 8405231 -93467938 - AluY SINE Alu -15 296 1 198 0 0 0 chr13 8405264 8405286 -93467883 + (A)n Simple_repeat Simple_repeat 1 22 0 2269 100 0 7 chr13 8406286 8406595 -93466574 + AluSx SINE Alu 1 307 -5 827 211 11 16 chr13 8407463 8407653 -93465516 - MER5A DNA MER1_type 0 189 1 4405 228 69 20 chr13 8407827 8409412 -93463757 - L1MDa LINE L1 -4723 1817 17 24 0 0 0 chr13 8409527 8409551 -93463618 + AT_rich Low_complexity Low_complexity 1 24 0 2192 171 22 7 chr13 8410326 8410740 -93462429 + MSTB LTR MaLR 7 426 0 1813 255 35 31 chr13 8411431 8411952 -93461217 + L1M4 LINE L1 27 549 -5993 3481 238 94 29 chr13 8411981 8413462 -93459707 + L1M4 LINE L1 973 2550 -4096 312 346 19 25 chr13 8413462 8413624 -93459545 - L1M4 LINE L1 -1313 4833 4673 1890 223 71 30 chr13 8413624 8414185 -93458984 + MER74B LTR ERVL 29 612 -10 597 268 14 27 chr13 8414198 8414493 -93458676 - L1M4 LINE L1 -1500 4646 4356 599 176 0 0 chr13 8414529 8414620 -93458549 - FRAM SINE Alu -73 103 13 881 158 28 0 chr13 8414868 8415045 -93458124 - MER57B LTR ERV1 0 434 253 6335 162 20 8 chr13 8415045 8415837 -93457332 + L1PA16 LINE L1 3893 4674 -1492 1862 116 16 0 chr13 8415837 8416088 -93457081 + AluSg SINE Alu 44 298 -12 6335 162 20 8 chr13 8416088 8417530 -93455639 + L1PA16 LINE L1 4674 6157 -9 291 132 0 0 chr13 8417534 8417587 -93455582 - ERVL-B1 LTR ERVL -255 5509 5457 189 74 0 0 chr13 8417588 8417615 -93455554 + (CA)n Simple_repeat Simple_repeat 2 28 0 11263 152 19 15 chr13 8417615 8419581 -93453588 - ERVL-B1 LTR ERVL -346 5418 3444 5054 159 48 12 chr13 8419569 8419995 -93453174 - ERVL-B1 LTR ERVL -2965 2799 2390 * 2004 151 110 15 chr13 8419995 8420385 -93452784 + MSTA LTR MaLR 1 427 -1 5054 159 48 12 chr13 8420385 8420887 -93452282 - ERVL-B1 LTR ERVL -3374 2390 1837 6831 212 28 35 chr13 8420917 8421426 -93451743 - ERVL-B1 LTR ERVL -4139 1625 1114 984 171 411 10 chr13 8421426 8421730 -93451439 + MSTB LTR MaLR 1 426 0 6831 212 28 35 chr13 8421730 8422609 -93450560 - ERVL-B1 LTR ERVL -4650 1114 247 2037 129 46 35 chr13 8422609 8422980 -93450189 - THE1C LTR MaLR 0 375 1 6831 212 28 35 chr13 8422980 8423225 -93449944 - ERVL-B1 LTR ERVL -5517 247 2 259 92 0 123 chr13 8423226 8423291 -93449878 - MLT2B1 LTR ERVL 0 515 464 225 0 0 0 chr13 8423291 8423316 -93449853 + (TA)n Simple_repeat Simple_repeat 1 25 0 1235 219 99 56 chr13 8423341 8423806 -93449363 - MLT2B1 LTR ERVL -35 485 1 2488 85 0 0 chr13 8423950 8424257 -93448912 + AluY SINE Alu 1 307 -4 285 264 170 0 chr13 8424362 8424468 -93448701 + MIR SINE MIR 3 126 -136 632 147 0 53 chr13 8424515 8424705 -93448464 + (TA)n Simple_repeat Simple_repeat 1 180 0 2306 105 0 0 chr13 8425911 8426207 -93446962 - AluSx SINE Alu -16 296 1 228 135 0 0 chr13 8426242 8426279 -93446890 + (T)n Simple_repeat Simple_repeat 1 37 0 25 51 0 0 chr13 8426795 8426834 -93446335 + AT_rich Low_complexity Low_complexity 1 39 0 294 382 81 35 chr13 8426909 8427281 -93445888 + L2 LINE L2 2880 3268 -4 2231 116 0 0 chr13 8427517 8427820 -93445349 + AluSg SINE Alu 1 303 -7 252 0 0 0 chr13 8427836 8427864 -93445305 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 2139 125 3 0 chr13 8427867 8428155 -93445014 - AluSg SINE Alu -21 289 1 21 57 0 0 chr13 8428374 8428409 -93444760 + AT_rich Low_complexity Low_complexity 1 35 0 372 234 123 58 chr13 8429168 8429339 -93443830 - L2 LINE L2 0 3313 3132 2180 136 0 0 chr13 8429392 8429700 -93443469 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr13 8429776 8429804 -93443365 + AT_rich Low_complexity Low_complexity 1 28 0 726 181 0 0 chr13 8429806 8429933 -93443236 + FRAM SINE Alu 40 166 -10 359 321 82 60 chr13 8430722 8431086 -93442083 + L1ME4a LINE L1 2193 2564 -3582 234 236 121 18 chr13 8431181 8431346 -93441823 + L1ME4a LINE L1 2649 2830 -3316 989 116 9 116 chr13 8431675 8431900 -93441269 + L1MB8 LINE L1 5977 6177 -1 303 309 130 26 chr13 8431906 8432213 -93440956 + L1ME4a LINE L1 4994 5332 -814 330 327 153 14 chr13 8432260 8432483 -93440686 + L1ME4a LINE L1 5392 5645 -2163 702 179 11 11 chr13 8432526 8432705 -93440464 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 505 336 81 45 chr13 8433038 8433482 -93439687 + L1ME4a LINE L1 5624 6083 -38 2304 79 0 3 chr13 8433985 8434277 -93438892 + AluY SINE Alu 2 292 -19 819 178 0 0 chr13 8435035 8435164 -93438005 - FLAM_A SINE Alu -4 129 1 207 162 0 0 chr13 8435169 8435206 -93437963 + T-rich Low_complexity Low_complexity 1 37 0 1810 181 2 48 chr13 8435303 8435702 -93437467 - MLT1B LTR MaLR 0 390 10 394 333 57 18 chr13 8435784 8436348 -93436821 - L1M4 LINE L1 -1309 4837 4252 1487 244 56 19 chr13 8436649 8437076 -93436093 + MER74B LTR ERVL 58 500 -122 598 164 30 94 chr13 8437583 8437669 -93435500 - L1MC5 LINE L1 -48 7913 7823 2522 44 0 7 chr13 8437669 8437965 -93435204 + AluY SINE Alu 1 294 -17 598 164 30 94 chr13 8437965 8438079 -93435090 - L1MC5 LINE L1 -138 7823 7726 214 274 147 20 chr13 8438207 8438309 -93434860 + MIR SINE MIR 19 133 -75 344 353 16 8 chr13 8438458 8438580 -93434589 + MIR SINE MIR 22 144 -118 313 211 64 9 chr13 8438668 8438777 -93434392 + Charlie7 DNA MER1_type 65 179 -2433 333 313 53 27 chr13 8438794 8439166 -93434003 - L1MEd LINE L1 -4869 1250 895 8569 95 0 1 chr13 8439452 8440636 -93432533 + THE1B-int LTR MaLR 398 1580 0 2263 113 73 14 chr13 8440636 8440980 -93432189 + THE1B LTR MaLR 1 364 0 1699 181 0 0 chr13 8440980 8441312 -93431857 + L1PA13 LINE L1 4126 4457 -1689 1765 124 0 16 chr13 8441312 8441569 -93431600 + AluSx SINE Alu 35 287 -25 750 99 9 0 chr13 8441587 8441698 -93431471 + THE1B LTR MaLR 253 364 0 5914 114 9 3 chr13 8441698 8442860 -93430309 + L1PA13 LINE L1 4995 6163 0 1580 202 34 3 chr13 8443370 8443667 -93429502 + AluJo SINE Alu 1 306 -6 226 290 0 0 chr13 8443932 8443994 -93429175 + GA-rich Low_complexity Low_complexity 3 64 0 1520 184 52 66 chr13 8444064 8444609 -93428560 + MER67C LTR ERV1 1 504 -10 22 0 0 0 chr13 8445375 8445397 -93427772 + AT_rich Low_complexity Low_complexity 1 22 0 4350 165 37 26 chr13 8445472 8446731 -93426438 + L1MB4 LINE L1 4909 6176 -4 430 275 53 76 chr13 8446845 8447187 -93425982 + L1ME4a LINE L1 4869 5196 -950 2382 74 0 0 chr13 8447187 8447483 -93425686 - AluY SINE Alu -15 296 1 430 275 53 76 chr13 8447483 8447682 -93425487 + L1ME4a LINE L1 5196 5398 -748 292 327 13 13 chr13 8447872 8448028 -93425141 + L1ME4a LINE L1 5663 5818 -303 2048 106 4 0 chr13 8448344 8448618 -93424551 + AluSc SINE Alu 33 307 -2 304 238 0 38 chr13 8448618 8448687 -93424482 + L1ME4a LINE L1 5973 6040 -81 1689 74 0 52 chr13 8449009 8449239 -93423930 + AluSq SINE Alu 1 218 -95 555 172 125 8 chr13 8449524 8449652 -93423517 - MLT1B LTR MaLR -234 156 14 2245 105 0 0 chr13 8449726 8450021 -93423148 - AluSx SINE Alu -17 295 1 897 168 6 48 chr13 8450928 8451095 -93422074 - FRAM SINE Alu -17 159 1 1038 200 69 87 chr13 8451124 8451291 -93421878 + MLT1C LTR MaLR 7 176 -291 2055 122 0 3 chr13 8451291 8451585 -93421584 + AluSx SINE Alu 1 293 -19 1038 200 69 87 chr13 8451585 8451852 -93421317 + MLT1C LTR MaLR 176 433 -34 363 286 81 11 chr13 8451877 8452062 -93421107 + L2 LINE L2 1771 1968 -1346 204 272 201 41 chr13 8452216 8452484 -93420685 + L2 LINE L2 2341 2651 -663 2222 105 0 16 chr13 8452546 8452850 -93420319 + AluSx SINE Alu 3 301 -11 1656 151 15 48 chr13 8452857 8453189 -93419980 - MLT1A1 LTR MaLR -40 325 5 459 0 0 0 chr13 8453232 8453283 -93419886 + (TG)n Simple_repeat Simple_repeat 1 51 0 2138 132 14 3 chr13 8453283 8453646 -93419523 - L1MA9 LINE L1 -161 6151 5785 1579 265 32 2 chr13 8453892 8454303 -93418866 - MER70B LTR ERVL -152 426 4 1991 161 13 20 chr13 8454316 8454707 -93418462 - MER70B-int LTR ERVL 0 5023 4636 1106 207 33 15 chr13 8455579 8456015 -93417154 - MER70B-int LTR ERVL -1443 3580 3084 * 1364 163 112 14 chr13 8456012 8456307 -93416862 - MER70B-int LTR ERVL -2375 2648 2325 258 383 128 0 chr13 8456317 8456544 -93416625 - L1M3c LINE L1 -5884 257 2 612 278 98 7 chr13 8456885 8457162 -93416007 - L1MC4 LINE L1 -443 7599 7298 1759 179 28 0 chr13 8457171 8457461 -93415708 + AluJb SINE Alu 1 298 -14 319 219 29 0 chr13 8458492 8458597 -93414572 + (TA)n Simple_repeat Simple_repeat 1 108 0 252 0 0 0 chr13 8458632 8458660 -93414509 + (TA)n Simple_repeat Simple_repeat 2 29 0 2485 58 0 16 chr13 8458660 8458971 -93414198 - AluY SINE Alu -5 306 1 189 0 0 0 chr13 8459628 8459649 -93413520 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1578 183 0 21 chr13 8459652 8459942 -93413227 - AluJb SINE Alu -28 284 1 327 207 17 52 chr13 8459948 8460064 -93413105 + Charlie7 DNA MER1_type 2435 2546 -66 2336 62 7 3 chr13 8460105 8460395 -93412774 + AluSq SINE Alu 1 291 -22 327 276 26 79 chr13 8460533 8460685 -93412484 - L2 LINE L2 -7 3306 3163 216 293 17 0 chr13 8461162 8461220 -93411949 + (CG)n Simple_repeat Simple_repeat 2 60 0 2673 48 0 0 chr13 8461406 8461716 -93411453 - AluY SINE Alu 0 311 2 365 274 0 12 chr13 8462250 8462334 -93410835 - MIR SINE MIR -153 109 27 1020 139 13 0 chr13 8462378 8462529 -93410640 - FRAM SINE Alu -24 152 1 358 259 35 26 chr13 8462614 8462730 -93410439 + MIR3 SINE MIR 86 202 -6 2329 102 16 0 chr13 8463264 8463568 -93409601 - AluSc SINE Alu 0 309 1 2231 90 3 0 chr13 8463687 8463976 -93409193 + AluSx SINE Alu 1 290 -22 208 279 47 58 chr13 8464325 8464411 -93408758 - L3b LINE CR1 -98 1485 1401 1841 224 56 18 chr13 8464576 8465023 -93408146 - MLT1D LTR MaLR -21 484 21 323 344 51 6 chr13 8465056 8465213 -93407956 - L3 LINE CR1 -41 1536 1373 215 349 48 0 chr13 8465336 8465419 -93407750 - L2 LINE L2 -4 3268 3182 5286 266 104 20 chr13 8465925 8466075 -93407094 - L2 LINE L2 0 3313 3177 1893 140 90 39 chr13 8466075 8466432 -93406737 + THE1C LTR MaLR 1 375 0 5286 266 104 20 chr13 8466432 8467051 -93406118 - L2 LINE L2 -136 3177 2611 2708 196 70 33 chr13 8467051 8467621 -93405548 + MLT1E LTR MaLR 1 591 -2 5286 266 104 20 chr13 8467621 8468955 -93404214 - L2 LINE L2 -702 2611 1032 4520 141 63 41 chr13 8468961 8469242 -93403927 + L1MCa LINE L1 579 852 -5574 3440 77 18 14 chr13 8469242 8469684 -93403485 - MLT2A1 LTR ERVL 0 444 1 4520 141 63 41 chr13 8469684 8470313 -93402856 + L1MCa LINE L1 852 1509 -4917 274 298 36 12 chr13 8470313 8470397 -93402772 - MIR SINE MIR -171 91 6 201 129 0 0 chr13 8470430 8470461 -93402708 + (CA)n Simple_repeat Simple_repeat 2 32 0 1318 283 97 36 chr13 8470593 8471009 -93402160 + L1MEc LINE L1 1213 1602 -4794 1854 112 71 4 chr13 8471009 8471304 -93401865 + AluSx SINE Alu 1 313 0 1318 283 97 36 chr13 8471304 8471632 -93401537 + L1MEc LINE L1 1602 2003 -4393 3551 166 22 37 chr13 8471705 8472374 -93400795 + MER67B LTR ERV1 1 659 -2 911 97 0 0 chr13 8472384 8472497 -93400672 + AluY SINE Alu 1 113 -198 657 234 27 11 chr13 8472497 8472681 -93400488 + L1MEc LINE L1 2856 3042 -3173 195 184 0 0 chr13 8472681 8472719 -93400450 + (TA)n Simple_repeat Simple_repeat 2 39 0 237 174 0 0 chr13 8472756 8472802 -93400367 + LTR66 LTR ERVL 394 439 -171 * 1899 201 37 5 chr13 8472788 8473159 -93400010 - MLT2D LTR ERVL -40 480 1 3630 212 117 41 chr13 8473159 8474447 -93398722 + L1M3 LINE L1 4004 5406 -760 2210 137 5 67 chr13 8474447 8474833 -93398336 + MLT1A1 LTR MaLR 4 365 0 3630 212 117 41 chr13 8474833 8474966 -93398203 + L1M3 LINE L1 5406 5528 -638 1565 189 31 18 chr13 8474980 8475043 -93398126 + MER45B DNA AcHobo 38 99 -941 2246 99 20 3 chr13 8475043 8475345 -93397824 - AluSq SINE Alu -6 307 1 1565 189 31 18 chr13 8475345 8475567 -93397602 + MER45B DNA AcHobo 99 327 -713 573 128 12 0 chr13 8475567 8475653 -93397516 + L1M3 LINE L1 5587 5673 -510 788 101 335 21 chr13 8475653 8475841 -93397328 + MER45B DNA AcHobo 790 1036 -4 495 250 0 0 chr13 8475843 8475943 -93397226 + L1ME LINE L1 5523 5622 -544 200 136 68 0 chr13 8477257 8477301 -93395868 + A-rich Low_complexity Low_complexity 1 47 0 474 336 94 0 chr13 8477565 8477788 -93395381 - MIR SINE MIR -8 254 11 184 263 0 0 chr13 8477901 8477939 -93395230 + L3b LINE CR1 1200 1237 -346 1141 284 83 43 chr13 8478086 8478320 -93394849 + LTR16B LTR ERVL 1 224 -240 2195 52 33 4 chr13 8478320 8478616 -93394553 + AluY SINE Alu 1 304 0 1141 284 83 43 chr13 8478616 8478824 -93394345 + LTR16B LTR ERVL 224 462 -2 2441 86 0 3 chr13 8478854 8479167 -93394002 + AluSx SINE Alu 1 312 0 193 340 0 0 chr13 8479940 8479990 -93393179 + MIR SINE MIR 64 113 -149 1920 132 17 20 chr13 8480372 8480668 -93392501 + AluJb SINE Alu 1 295 -17 346 280 347 19 chr13 8481373 8481493 -93391676 - L2 LINE L2 0 3272 3193 1111 175 123 32 chr13 8481493 8481745 -93391424 + ORSL DNA AcHobo 1 275 0 346 280 347 19 chr13 8481745 8481892 -93391277 - L2 LINE L2 -79 3193 2917 245 374 34 11 chr13 8482558 8482737 -93390432 - L2 LINE L2 -899 2415 2233 3119 195 33 0 chr13 8482739 8483283 -93389886 + MER68 LTR ERV1 1 562 0 218 291 13 38 chr13 8485307 8485386 -93387783 + MIR SINE MIR 3 79 -183 2282 104 0 3 chr13 8486117 8486424 -93386745 + AluSg SINE Alu 1 306 -4 211 360 47 23 chr13 8486723 8486895 -93386274 + L2 LINE L2 2612 2787 -527 253 194 163 51 chr13 8487277 8487375 -93385794 + L2 LINE L2 3204 3312 -1 25 65 0 0 chr13 8488270 8488316 -93384853 + AT_rich Low_complexity Low_complexity 1 46 0 662 268 28 6 chr13 8490806 8490985 -93382184 + MIR SINE MIR 79 261 -1 389 342 0 0 chr13 8490999 8491119 -93382050 + L2 LINE L2 3178 3297 -16 239 214 0 71 chr13 8491121 8491191 -93381978 - U4 snRNA snRNA -80 65 1 2201 102 0 7 chr13 8491313 8491621 -93381548 + AluSg SINE Alu 1 306 0 344 266 0 0 chr13 8492087 8492166 -93381003 + MLT1J2 LTR MaLR 84 162 -288 1196 185 19 0 chr13 8492247 8492452 -93380717 + MER3 DNA MER1_type 1 209 0 247 172 184 35 chr13 8492502 8492589 -93380580 + MLT1J1 LTR MaLR 347 446 0 31 44 0 0 chr13 8493433 8493478 -93379691 + AT_rich Low_complexity Low_complexity 1 45 0 283 330 34 11 chr13 8495208 8495296 -93377873 + MER5B DNA MER1_type 27 116 -62 1271 122 185 4 chr13 8497311 8497549 -93375620 - AluJo SINE Alu -17 285 5 237 207 276 11 chr13 8498279 8498366 -93374803 - L2 LINE L2 0 3313 3204 25 51 0 0 chr13 8499336 8499375 -93373794 + AT_rich Low_complexity Low_complexity 1 39 0 2383 97 0 0 chr13 8499539 8499838 -93373331 + AluSc SINE Alu 1 299 -10 2137 148 17 14 chr13 8499998 8500355 -93372814 - L1MB7 LINE L1 -9 6175 5818 800 275 174 28 chr13 8500446 8500842 -93372327 - LTR16A1 LTR ERVL -1 456 3 1989 319 59 18 chr13 8500926 8502249 -93370920 - HERV16 LTR ERVL -90 5344 3938 2591 317 37 9 chr13 8502314 8503298 -93369871 - HERV16 LTR ERVL -1926 3838 2828 371 236 47 8 chr13 8503304 8503431 -93369738 - Charlie5 DNA MER1_type -85 2527 2396 1698 309 61 19 chr13 8504264 8504536 -93368633 - HERV16 LTR ERVL -2923 2841 2582 420 139 0 70 chr13 8504536 8504622 -93368547 - MADE1 DNA Mariner 0 80 1 1698 309 61 19 chr13 8504622 8505106 -93368063 - HERV16 LTR ERVL -3182 2582 2053 * 2398 298 115 55 chr13 8505096 8505834 -93367335 - HERV16 LTR ERVL -3184 1812 1119 222 37 0 0 chr13 8505834 8505861 -93367308 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2398 298 115 55 chr13 8505861 8506832 -93366337 - HERV16 LTR ERVL -3877 1119 1 388 243 162 7 chr13 8506832 8506980 -93366189 - LTR16A1 LTR ERVL 0 457 287 769 188 5 124 chr13 8507386 8507520 -93365649 - MER5B DNA MER1_type 0 178 74 2300 107 3 0 chr13 8507520 8507818 -93365351 - AluSq SINE Alu -14 299 1 769 188 5 124 chr13 8507818 8507885 -93365284 - MER5B DNA MER1_type -104 74 1 216 270 135 18 chr13 8507886 8507997 -93365172 + L2 LINE L2 3190 3313 0 2304 94 0 23 chr13 8508283 8508591 -93364578 + AluSq SINE Alu 1 301 -12 823 123 0 72 chr13 8508604 8508742 -93364427 + FLAM_C SINE Alu 1 128 -15 2021 109 51 0 chr13 8509089 8509363 -93363806 - AluSg SINE Alu -22 288 1 2405 62 0 13 chr13 8509759 8510064 -93363105 - AluY SINE Alu -10 301 1 1749 196 0 7 chr13 8512529 8512835 -93360334 - AluJo SINE Alu -8 304 1 2318 116 0 0 chr13 8513358 8513669 -93359500 + AluSx SINE Alu 1 311 -1 2110 135 0 0 chr13 8513674 8513963 -93359206 + AluSx SINE Alu 3 291 -21 516 318 50 0 chr13 8514267 8514446 -93358723 - MIR SINE MIR -13 249 62 2343 95 0 0 chr13 8514778 8515074 -93358095 - AluSx SINE Alu -16 296 1 578 227 198 12 chr13 8515423 8515595 -93357574 + MIR SINE MIR 59 262 0 366 250 159 9 chr13 8515653 8515873 -93357296 - LTR16C LTR ERVL -16 475 223 2133 127 0 0 chr13 8515943 8516234 -93356935 + AluSx SINE Alu 1 291 -21 2035 136 27 0 chr13 8516288 8516589 -93356580 + AluSc SINE Alu 1 309 0 228 135 0 0 chr13 8516639 8516676 -93356493 + (CAT)n Simple_repeat Simple_repeat 2 38 0 319 292 42 0 chr13 8517102 8517198 -93355971 + MER5B DNA MER1_type 2 101 -77 3362 190 20 8 chr13 8517199 8517909 -93355260 - L1 LINE L1 -1120 5026 4309 273 160 0 0 chr13 8517909 8517959 -93355210 + Alu SINE Alu 259 308 0 430 240 33 8 chr13 8517990 8518111 -93355058 + L1MA9 LINE L1 6167 6290 -22 263 163 0 0 chr13 8518159 8518202 -93354967 + MER5B DNA MER1_type 136 178 0 4353 141 15 51 chr13 8518324 8519150 -93354019 + L1MA9 LINE L1 5021 5875 -437 2473 99 0 0 chr13 8519150 8519462 -93353707 + AluSq SINE Alu 1 312 -1 4353 141 15 51 chr13 8519462 8519709 -93353460 + L1MA9 LINE L1 5875 6141 -171 2327 92 0 3 chr13 8519709 8520012 -93353157 + AluSx SINE Alu 1 302 -10 4353 141 15 51 chr13 8520012 8520157 -93353012 + L1MA9 LINE L1 6141 6290 -22 2398 43 0 4 chr13 8520173 8520483 -93352686 + AluY SINE Alu 2 310 0 967 331 30 48 chr13 8521703 8522198 -93350971 + L2 LINE L2 994 1479 -1835 1121 256 59 22 chr13 8522212 8522690 -93350479 + MLT1H LTR MaLR 14 547 -2 222 333 21 10 chr13 8522710 8522806 -93350363 + L2 LINE L2 1493 1589 -1725 662 219 121 47 chr13 8523036 8523251 -93349918 - MIR SINE MIR -27 235 5 1196 283 95 96 chr13 8523265 8523384 -93349785 + L2 LINE L2 1802 1920 -1393 708 217 66 40 chr13 8523384 8523610 -93349559 + MER106A DNA MER1_type 1 232 -4 1196 283 95 96 chr13 8523610 8524378 -93348791 + L2 LINE L2 1920 2687 -626 1024 128 6 6 chr13 8524378 8524558 -93348611 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 189 0 0 0 chr13 8524563 8524584 -93348585 + (TCCA)n Simple_repeat Simple_repeat 3 23 0 1196 283 95 96 chr13 8524584 8525032 -93348137 + L2 LINE L2 2691 3135 -178 1991 139 9 22 chr13 8526631 8526947 -93346222 + AluJo SINE Alu 1 312 0 185 291 73 0 chr13 8527563 8527618 -93345551 - L2 LINE L2 0 3272 3214 198 118 0 0 chr13 8528788 8528822 -93344347 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 318 26 0 0 chr13 8532506 8532545 -93340624 + (TG)n Simple_repeat Simple_repeat 1 39 0 804 260 35 31 chr13 8532625 8532879 -93340290 - MIR SINE MIR 0 262 8 198 0 0 0 chr13 8533113 8533135 -93340034 + (TG)n Simple_repeat Simple_repeat 2 23 0 317 349 128 13 chr13 8533177 8533326 -93339843 + MIR3 SINE MIR 16 181 -27 1842 160 29 29 chr13 8533849 8534193 -93338976 - MER2 DNA MER2_type 0 344 1 423 320 79 57 chr13 8534399 8534627 -93338542 - L2 LINE L2 0 3272 3040 2863 142 43 13 chr13 8535923 8536457 -93336712 - L1MB7 LINE L1 -19 6165 5616 2502 55 3 0 chr13 8537746 8538053 -93335116 - AluY SINE Alu -3 308 1 2064 107 10 0 chr13 8538069 8538358 -93334811 - AluSq SINE Alu -21 292 1 2385 61 0 3 chr13 8538369 8538666 -93334503 - AluY SINE Alu -15 296 1 24 0 0 0 chr13 8538826 8538850 -93334319 + AT_rich Low_complexity Low_complexity 1 24 0 848 173 31 19 chr13 8538882 8538898 -93334271 - FRAM SINE Alu -137 165 151 180 0 0 0 chr13 8538898 8538918 -93334251 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 848 173 31 19 chr13 8538918 8539063 -93334106 - FRAM SINE Alu -151 151 2 363 216 11 0 chr13 8539145 8539233 -93333936 - L1MA4A LINE L1 -26 6277 6189 2960 160 14 10 chr13 8539239 8539821 -93333348 - L1MA4A LINE L1 -183 6120 5537 238 356 113 52 chr13 8539821 8540051 -93333118 - L2 LINE L2 -38 3234 2991 976 294 172 19 chr13 8540280 8540977 -93332192 - L2 LINE L2 -362 2952 2149 412 253 207 5 chr13 8542204 8542402 -93330767 - L1MC4a LINE L1 -1903 5905 5668 513 0 0 0 chr13 8542876 8542933 -93330236 + (CA)n Simple_repeat Simple_repeat 2 58 0 1726 181 0 0 chr13 8542948 8543219 -93329950 - AluJo SINE Alu -21 291 21 200 35 35 0 chr13 8544478 8544507 -93328662 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 3486 169 100 43 chr13 8544661 8544731 -93328438 - L1MB8 LINE L1 0 6178 6113 2340 108 3 0 chr13 8544731 8545028 -93328141 + AluSq SINE Alu 1 298 -15 3486 169 100 43 chr13 8545028 8545861 -93327308 - L1MB8 LINE L1 -65 6113 5225 3728 109 51 149 chr13 8545861 8546147 -93327022 - Tigger3(Golem) DNA MER2_type 0 3029 2717 1425 194 14 25 chr13 8546147 8546431 -93326738 + AluJo SINE Alu 1 281 -31 3728 109 51 149 chr13 8546431 8546836 -93326333 - Tigger3(Golem) DNA MER2_type -312 2717 2274 505 149 11 11 chr13 8546836 8546923 -93326246 + AluJ/FLAM SINE Alu 1 87 -225 3728 109 51 149 chr13 8546923 8547537 -93325632 - Tigger3(Golem) DNA MER2_type -755 2274 1 1205 196 237 7 chr13 8547541 8547979 -93325190 - L1MB8 LINE L1 -937 5209 4671 21 0 0 0 chr13 8548161 8548182 -93324987 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr13 8548282 8548305 -93324864 + AT_rich Low_complexity Low_complexity 1 23 0 402 291 102 20 chr13 8548711 8548965 -93324204 - L1MC4a LINE L1 -439 5682 5408 2398 92 0 0 chr13 8549050 8549356 -93323813 - AluY SINE Alu -5 306 1 461 322 115 29 chr13 8549527 8550005 -93323164 - L1MC4a LINE L1 -1087 5059 4541 422 189 75 0 chr13 8550137 8550243 -93322926 - MER53 DNA DNA -75 114 1 2259 79 7 0 chr13 8550499 8550777 -93322392 - AluSc SINE Alu -20 289 10 214 278 12 33 chr13 8550994 8551089 -93322080 + MIR SINE MIR 49 144 -64 23 0 0 0 chr13 8551179 8551202 -93321967 + AT_rich Low_complexity Low_complexity 1 23 0 552 316 130 3 chr13 8552531 8552816 -93320353 + L3 LINE CR1 1251 1571 -6 256 297 0 62 chr13 8553081 8553209 -93319960 - L2 LINE L2 -829 2485 2366 239 308 15 0 chr13 8553311 8553376 -93319793 + L1MC4 LINE L1 6934 6999 -1043 1574 187 59 9 chr13 8553387 8553708 -93319461 - MER2 DNA MER2_type 0 345 9 1250 293 74 31 chr13 8553785 8554526 -93318643 + L1MC4 LINE L1 7109 7881 -161 258 32 0 0 chr13 8554594 8554625 -93318544 + (TG)n Simple_repeat Simple_repeat 2 32 0 526 224 28 47 chr13 8555101 8555326 -93317843 - L1M4 LINE L1 -681 5497 5275 1039 168 5 10 chr13 8555424 8555627 -93317542 + L1PB1 LINE L1 3 204 -6659 * 10058 154 40 44 chr13 8555618 8557953 -93315216 + L1PB1 LINE L1 1113 3455 -3412 2181 104 0 3 chr13 8557953 8558240 -93314929 + AluSc SINE Alu 1 286 -23 2257 99 7 3 chr13 8558243 8558547 -93314622 + AluSg SINE Alu 1 305 -5 10058 154 40 44 chr13 8558547 8559585 -93313584 + L1PB1 LINE L1 3457 4497 -2370 2087 112 25 0 chr13 8559585 8559862 -93313307 + AluSq SINE Alu 3 286 -27 262 0 0 0 chr13 8559862 8559891 -93313278 + (CAAAA)n Simple_repeat Simple_repeat 2 120 0 10058 154 40 44 chr13 8559891 8560521 -93312648 + L1PB1 LINE L1 4497 5128 -1739 243 88 0 0 chr13 8560521 8560555 -93312614 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 10058 154 40 44 chr13 8560555 8561913 -93311256 + L1PB1 LINE L1 5128 6505 -362 459 18 0 0 chr13 8561925 8561980 -93311189 - AluSg/x SINE Alu -43 266 212 2511 104 6 6 chr13 8561987 8562352 -93310817 + L1PB1 LINE L1 6501 6865 -2 401 251 134 40 chr13 8562487 8562590 -93310579 - L1M4 LINE L1 -901 5245 5153 2206 104 0 3 chr13 8562590 8562887 -93310282 - AluSg SINE Alu -14 296 1 401 251 134 40 chr13 8562887 8563058 -93310111 - L1M4 LINE L1 -993 5153 4945 780 197 45 155 chr13 8563064 8563400 -93309769 - L1M4 LINE L1 -1379 4767 4396 1630 145 80 0 chr13 8563400 8563662 -93309507 - AluSx SINE Alu -27 285 3 780 197 45 155 chr13 8563662 8563677 -93309492 - L1M4 LINE L1 -1750 4396 4381 2361 90 7 0 chr13 8563677 8563977 -93309192 - AluSc SINE Alu -7 302 1 780 197 45 155 chr13 8563977 8564178 -93308991 - L1M4 LINE L1 -1765 4381 4275 2299 81 0 0 chr13 8564179 8564474 -93308695 - AluY SINE Alu -16 295 1 210 37 0 0 chr13 8565427 8565454 -93307715 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2123 112 7 14 chr13 8565459 8565754 -93307415 + AluSg SINE Alu 1 293 -17 1473 138 53 0 chr13 8565760 8565985 -93307184 + Tigger3(Golem) DNA MER2_type 2791 3027 -2 279 272 103 70 chr13 8566110 8566411 -93306758 - HAL1 LINE L1 -4 2503 2193 797 256 30 0 chr13 8566419 8566618 -93306551 - HAL1 LINE L1 -677 1830 1626 477 176 33 0 chr13 8566898 8566989 -93306180 + MER5A DNA MER1_type 9 102 -87 612 308 26 51 chr13 8567059 8567332 -93305837 - MLT1J LTR MaLR -235 276 11 696 223 30 72 chr13 8567332 8567637 -93305532 - HAL1 LINE L1 -899 1608 1317 312 93 0 0 chr13 8567641 8567684 -93305485 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 299 241 90 24 chr13 8567732 8567898 -93305271 - HAL1 LINE L1 -1341 1166 990 279 27 41 178 chr13 8567909 8567940 -93305229 - L1MA8 LINE L1 -6 6285 6268 2025 117 13 10 chr13 8567940 8568240 -93304929 + AluSx SINE Alu 1 301 -11 279 27 41 178 chr13 8568240 8568281 -93304888 - L1MA8 LINE L1 -23 6268 6223 4048 154 70 14 chr13 8568305 8568748 -93304421 - L1MA8 LINE L1 -6 6294 5877 915 193 6 0 chr13 8568748 8568909 -93304260 - AluJo SINE Alu -4 298 137 4048 154 70 14 chr13 8568909 8569352 -93303817 - L1MA8 LINE L1 -423 5877 5322 2150 112 10 0 chr13 8569357 8569660 -93303509 - AluSc SINE Alu -3 306 1 353 296 112 34 chr13 8569713 8569919 -93303250 - HAL1 LINE L1 -1608 899 678 686 254 107 43 chr13 8569943 8570383 -93302786 - MER110A LTR ERV1 0 468 1 6620 257 102 69 chr13 8570525 8572389 -93300780 - MER110A-int LTR ERV1 -74 4573 2580 1239 171 42 114 chr13 8572389 8572792 -93300377 - MLT1A2 LTR MaLR 0 374 1 6620 257 102 69 chr13 8572792 8573767 -93299402 - MER110A-int LTR ERV1 -2067 2580 1639 1151 170 22 31 chr13 8573896 8574125 -93299044 - Tigger3(Golem) DNA MER2_type 0 3038 2812 280 277 15 0 chr13 8574100 8574165 -93299004 - Tigger3(Golem) DNA MER2_type -2963 66 1 * 255 272 0 87 chr13 8574166 8574269 -93298900 - MER110A-int LTR ERV1 -3170 1477 1384 307 301 43 21 chr13 8574328 8574421 -93298748 - MER110A-int LTR ERV1 -3295 1352 1258 768 217 133 6 chr13 8574449 8574615 -93298554 - MER58C DNA MER1_type 0 215 29 358 191 0 29 chr13 8574796 8574864 -93298305 - Tigger7 DNA MER2_type 0 2487 2422 1458 167 15 15 chr13 8574894 8575158 -93298011 - Tigger7 DNA MER2_type -2223 264 1 305 296 111 0 chr13 8575169 8575304 -93297865 - MER110A-int LTR ERV1 -3969 678 529 * 381 286 8 25 chr13 8575284 8575403 -93297766 - MER89-int LTR ERV1 -4124 2677 2561 261 333 35 0 chr13 8575624 8575711 -93297458 - MER89-int LTR ERV1 -4432 215 126 189 0 0 0 chr13 8575831 8575852 -93297317 + (T)n Simple_repeat Simple_repeat 1 21 0 392 339 32 32 chr13 8575952 8576321 -93296848 - MER89-int LTR ERV1 -4441 2360 1992 254 327 71 0 chr13 8577219 8577332 -93295837 - L2 LINE L2 -604 2710 2590 542 153 119 42 chr13 8577489 8577607 -93295562 - AluJo SINE Alu -172 130 4 575 230 52 110 chr13 8577783 8577923 -93295246 - L1MEc LINE L1 -3143 3072 2926 1635 116 8 27 chr13 8577923 8578181 -93294988 - AluSx SINE Alu -16 296 44 575 230 52 110 chr13 8578181 8578422 -93294747 - L1MEc LINE L1 -3289 2926 2713 295 236 9 27 chr13 8578467 8578577 -93294592 - L1MEc LINE L1 -3767 2448 2341 2176 112 0 7 chr13 8578600 8578905 -93294264 + AluSg1 SINE Alu 1 303 -6 324 222 204 57 chr13 8578997 8579173 -93293996 - L1MEc LINE L1 -4164 2232 2031 1483 167 3 97 chr13 8579255 8579585 -93293584 - AluJo SINE Alu -3 299 1 806 286 80 36 chr13 8579683 8580407 -93292762 - L1MEc LINE L1 -4616 1780 1025 2345 102 3 0 chr13 8581240 8581545 -93291624 - AluSx SINE Alu -6 306 1 1593 200 58 90 chr13 8581777 8582277 -93290892 + MLT1D LTR MaLR 22 505 0 806 227 62 0 chr13 8582737 8582931 -93290238 - MER3 DNA MER1_type -1 208 3 458 279 192 0 chr13 8583021 8583193 -93289976 + MIR SINE MIR 51 255 -7 414 329 37 0 chr13 8583300 8583464 -93289705 + L2 LINE L2 1728 1897 -1417 677 273 129 5 chr13 8583490 8583699 -93289470 + MIR SINE MIR 1 235 -27 2474 71 0 0 chr13 8583759 8584055 -93289114 - AluY SINE Alu -15 296 1 540 362 21 11 chr13 8584080 8584362 -93288807 + L2 LINE L2 1994 2278 -1036 1147 192 19 41 chr13 8584362 8584391 -93288778 - L1MB3 LINE L1 -24 6159 6131 1788 100 117 18 chr13 8584391 8584672 -93288497 - AluSg SINE Alu -1 309 1 1147 192 19 41 chr13 8584672 8584908 -93288261 - L1MB3 LINE L1 -52 6131 5900 2220 124 20 13 chr13 8584944 8585394 -93287775 - MER1A DNA MER1_type -2 527 1 225 274 16 0 chr13 8585902 8585964 -93287205 + CT-rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr13 8585964 8585988 -93287181 + AT_rich Low_complexity Low_complexity 1 24 0 501 300 125 82 chr13 8585997 8586580 -93286589 - MLT1L LTR MaLR -2 613 6 5298 72 0 27 chr13 8586626 8587333 -93285836 + LTR12 LTR ERV1 1 688 0 196 297 50 40 chr13 8587741 8587842 -93285327 + L2 LINE L2 3175 3276 -37 235 270 165 9 chr13 8588196 8588311 -93284858 - MIR SINE MIR -30 232 100 185 65 32 0 chr13 8590030 8590061 -93283108 + (TG)n Simple_repeat Simple_repeat 2 33 0 393 226 158 8 chr13 8590236 8590369 -93282800 + MIR SINE MIR 2 154 -108 4318 156 228 42 chr13 8590419 8590682 -93282487 + L1MB3 LINE L1 21 234 -6150 1853 161 0 3 chr13 8590682 8590967 -93282202 + AluJb SINE Alu 1 284 -28 4318 156 228 42 chr13 8590967 8591828 -93281341 + L1MB3 LINE L1 234 1355 -5029 * 9340 213 55 34 chr13 8591820 8593791 -93279378 + L1MB3 LINE L1 2615 4543 -1876 2277 108 3 3 chr13 8593791 8594096 -93279073 + AluSq SINE Alu 1 305 -8 9340 213 55 34 chr13 8594096 8594723 -93278446 + L1MB3 LINE L1 4543 5155 -1264 1739 164 0 46 chr13 8594723 8595046 -93278123 + AluJo SINE Alu 1 308 -4 9340 213 55 34 chr13 8595046 8596171 -93276998 + L1MB3 LINE L1 5155 6418 -1 208 254 8 8 chr13 8596353 8596483 -93276686 + (TA)n Simple_repeat Simple_repeat 1 130 0 1169 140 68 162 chr13 8597735 8598148 -93275021 - MLT1A2 LTR MaLR 0 374 1 278 317 26 37 chr13 8598458 8598641 -93274528 - L1ME LINE L1 -482 5682 5499 224 240 20 0 chr13 8599711 8599761 -93273408 + L2 LINE L2 3225 3275 -38 430 324 77 12 chr13 8600049 8600296 -93272873 - MER90 LTR ERV1 -18 557 295 1090 284 66 58 chr13 8600807 8601380 -93271789 - MER110-int LTR ERV1 -1337 3310 2733 28 61 0 0 chr13 8601830 8601879 -93271290 + AT_rich Low_complexity Low_complexity 1 49 0 2170 125 0 0 chr13 8602141 8602445 -93270724 + AluSx SINE Alu 3 306 -6 27 62 0 0 chr13 8602473 8602521 -93270648 + AT_rich Low_complexity Low_complexity 1 48 0 609 259 52 42 chr13 8603157 8603443 -93269726 - HAL1 LINE L1 -974 1533 1245 598 310 51 16 chr13 8603562 8603817 -93269352 - HAL1 LINE L1 -2240 267 4 24 0 0 0 chr13 8603955 8603979 -93269190 + AT_rich Low_complexity Low_complexity 1 24 0 2284 102 0 3 chr13 8604085 8604399 -93268770 - AluSq SINE Alu 0 313 1 242 346 0 12 chr13 8604492 8604573 -93268596 + L2 LINE L2 2888 2967 -305 5779 168 90 33 chr13 8604635 8604805 -93268364 - L1MA3 LINE L1 -7 6298 6139 1964 136 17 0 chr13 8604805 8605100 -93268069 - AluSx SINE Alu -12 300 1 5779 168 90 33 chr13 8605100 8606836 -93266333 - L1MA3 LINE L1 -166 6139 4228 1888 107 0 0 chr13 8606836 8607078 -93266091 + AluSx SINE Alu 38 279 -33 5779 168 90 33 chr13 8607078 8607378 -93265791 - L1MA3 LINE L1 -2077 4228 3947 1005 154 35 0 chr13 8607497 8607666 -93265503 + Tigger4(Zombi) DNA MER2_type 5 179 -2552 * 2769 109 32 32 chr13 8607664 8607738 -93265431 + Tigger4(Zombi) DNA MER2_type 2265 2338 -393 2062 141 0 0 chr13 8607738 8608036 -93265133 - AluSq SINE Alu -15 298 1 2769 109 32 32 chr13 8608036 8608428 -93264741 + Tigger4(Zombi) DNA MER2_type 2337 2731 0 27 73 0 0 chr13 8609292 8609347 -93263822 + AT_rich Low_complexity Low_complexity 1 55 0 419 359 138 26 chr13 8609385 8609995 -93263174 + L2 LINE L2 1341 2018 -1296 370 310 139 66 chr13 8609997 8610500 -93262669 + L2 LINE L2 2171 2710 -604 306 0 0 0 chr13 8610517 8610551 -93262618 + (CAA)n Simple_repeat Simple_repeat 2 35 0 363 78 0 0 chr13 8610709 8610760 -93262409 + (CA)n Simple_repeat Simple_repeat 2 52 0 824 229 19 33 chr13 8610769 8610983 -93262186 + Charlie1 DNA MER1_type 10 220 -2541 553 189 53 8 chr13 8610979 8611111 -93262058 + Charlie1 DNA MER1_type 2622 2759 -2 * 2627 36 0 3 chr13 8611147 8611450 -93261719 - AluY SINE Alu -9 302 1 365 255 229 38 chr13 8611520 8611677 -93261492 + L2 LINE L2 3124 3310 -3 511 339 38 6 chr13 8611867 8612050 -93261119 + MIR3 SINE MIR 15 203 -5 28 86 0 0 chr13 8612079 8612149 -93261020 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr13 8612549 8612573 -93260596 + AT_rich Low_complexity Low_complexity 1 24 0 558 217 159 16 chr13 8613376 8613565 -93259604 + L1ME3A LINE L1 5945 6160 -10 1188 243 122 21 chr13 8613670 8614196 -93258973 - L1M4 LINE L1 -945 5201 4623 341 57 0 19 chr13 8614292 8614345 -93258824 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 25 0 0 0 chr13 8614345 8614370 -93258799 + AT_rich Low_complexity Low_complexity 1 25 0 1096 256 83 2 chr13 8614378 8614789 -93258380 - L1M4 LINE L1 -1843 4303 3860 518 196 26 26 chr13 8614782 8614935 -93258234 - L1M4 LINE L1 -3206 2940 2788 * 493 237 7 40 chr13 8614933 8615085 -93258084 + L1MC5 LINE L1 7696 7842 -119 * 2301 105 0 0 chr13 8615727 8616021 -93257148 - AluSg SINE Alu -16 294 1 24 0 0 0 chr13 8616300 8616324 -93256845 + AT_rich Low_complexity Low_complexity 1 24 0 2239 81 21 0 chr13 8616525 8616809 -93256360 - AluSc SINE Alu -19 290 1 526 229 0 18 chr13 8617008 8617117 -93256052 + MIR SINE MIR 38 144 -118 233 189 0 0 chr13 8617117 8617154 -93256015 + L2 LINE L2 3220 3256 -16 1685 175 0 36 chr13 8617388 8617719 -93255450 - MLT1B LTR MaLR -2 388 70 * 4010 108 107 153 chr13 8617713 8618488 -93254681 - Tigger3b DNA MER2_type -1797 1232 423 2910 131 31 6 chr13 8618488 8618969 -93254200 - L1PA16 LINE L1 0 6166 5674 4010 108 107 153 chr13 8618969 8619074 -93254095 - Tigger3b DNA MER2_type -2606 423 315 1676 138 71 25 chr13 8619074 8619357 -93253812 + AluSx SINE Alu 1 296 -16 4010 108 107 153 chr13 8619357 8619779 -93253390 - Tigger3b DNA MER2_type -2714 315 1 502 132 13 0 chr13 8619779 8619855 -93253314 - MLT1B LTR MaLR -313 77 1 2137 113 3 7 chr13 8619978 8620279 -93252890 - AluSx SINE Alu -12 300 1 288 328 17 17 chr13 8620432 8620548 -93252621 - L2 LINE L2 0 3272 3157 655 303 29 29 chr13 8620657 8620901 -93252268 + MIR SINE MIR 10 253 -9 21 0 0 0 chr13 8621767 8621788 -93251381 + AT_rich Low_complexity Low_complexity 1 21 0 4008 174 38 38 chr13 8622088 8622896 -93250273 + L1MB4 LINE L1 5200 6012 -168 1713 120 59 115 chr13 8622896 8623253 -93249916 + MER1B DNA MER1_type 1 337 0 4008 174 38 38 chr13 8623253 8623423 -93249746 + L1MB4 LINE L1 6012 6180 0 21 57 0 0 chr13 8624053 8624088 -93249081 + AT_rich Low_complexity Low_complexity 1 35 0 259 285 57 55 chr13 8624196 8624327 -93248842 + MIR SINE MIR 51 183 -65 2063 141 20 3 chr13 8624453 8624794 -93248375 + MER7A DNA MER2_type 2 346 0 30 27 0 0 chr13 8625243 8625280 -93247889 + AT_rich Low_complexity Low_complexity 1 37 0 38 51 0 0 chr13 8626424 8626483 -93246686 + AT_rich Low_complexity Low_complexity 1 59 0 2399 77 0 3 chr13 8626522 8626832 -93246337 - AluY SINE Alu -2 309 1 24 53 0 0 chr13 8628509 8628547 -93244622 + AT_rich Low_complexity Low_complexity 1 38 0 2180 105 33 18 chr13 8628794 8629126 -93244043 + MER1B DNA MER1_type 1 337 0 2272 102 0 3 chr13 8629650 8629954 -93243215 + AluSg1 SINE Alu 1 303 -6 812 210 17 17 chr13 8630432 8630608 -93242561 + MER97c DNA MER1_type? 2 177 -913 2092 168 22 30 chr13 8631927 8632333 -93240836 - MLT2D LTR ERVL -8 406 4 2326 76 20 13 chr13 8632336 8632638 -93240531 + AluY SINE Alu 1 304 -7 1945 126 3 13 chr13 8632846 8633148 -93240021 + L1MB3 LINE L1 5533 5831 -352 1362 156 15 0 chr13 8633148 8633353 -93239816 + AluJo SINE Alu 86 293 -19 1683 96 123 15 chr13 8633373 8633697 -93239472 + L1MB3 LINE L1 5821 6179 -4 2186 134 0 3 chr13 8634024 8634331 -93238838 - AluSx SINE Alu -6 306 1 830 161 0 0 chr13 8634495 8634613 -93238556 + FLAM_C SINE Alu 7 124 -19 290 279 74 49 chr13 8634907 8635029 -93238140 + L2 LINE L2 3147 3271 -1 2099 168 6 6 chr13 8635654 8636017 -93237152 - MER47A DNA MER2_type -2 364 2 895 135 0 0 chr13 8636071 8636245 -93236924 - FLAM_C SINE Alu 0 174 1 2848 178 23 48 chr13 8636465 8636527 -93236642 - MLT2B3 LTR ERVL 0 554 492 494 70 14 0 chr13 8636527 8636598 -93236571 + (TGGA)n Simple_repeat Simple_repeat 3 74 0 2848 178 23 48 chr13 8636598 8637103 -93236066 - MLT2B3 LTR ERVL -62 492 1 21 0 0 0 chr13 8637309 8637330 -93235839 + AT_rich Low_complexity Low_complexity 1 21 0 2198 82 0 24 chr13 8637370 8637661 -93235508 + AluY SINE Alu 16 299 -12 763 167 0 53 chr13 8637835 8637985 -93235184 - FLAM_C SINE Alu -1 142 1 235 309 21 53 chr13 8638386 8638480 -93234689 - MIR SINE MIR -76 132 42 522 230 86 89 chr13 8638480 8638737 -93234432 - MER112 DNA MER1_type 0 260 5 26 0 0 0 chr13 8640875 8640901 -93232268 + AT_rich Low_complexity Low_complexity 1 26 0 331 191 119 0 chr13 8641770 8641854 -93231315 + MIR SINE MIR 52 145 -117 385 331 8 16 chr13 8641952 8642073 -93231096 + L2 LINE L2 3194 3313 0 423 358 111 16 chr13 8642517 8642707 -93230462 + L2 LINE L2 2553 2760 -554 550 207 21 14 chr13 8642772 8642917 -93230252 - MER104 DNA Tc2 -32 148 3 594 251 72 32 chr13 8643119 8643398 -93229771 - L1M4 LINE L1 -2225 3921 3632 1211 143 4 78 chr13 8643464 8643694 -93229475 + AluJb SINE Alu 1 213 -99 2032 136 0 3 chr13 8644145 8644439 -93228730 - AluSx SINE Alu -19 293 1 1512 170 50 40 chr13 8644439 8644739 -93228430 - AluJb SINE Alu -9 303 1 290 348 0 0 chr13 8644944 8645033 -93228136 - L2 LINE L2 -568 2746 2658 228 213 11 96 chr13 8645578 8645672 -93227497 + MIR SINE MIR 66 151 -57 215 211 28 28 chr13 8646004 8646075 -93227094 + CT-rich Low_complexity Low_complexity 4 74 0 192 357 85 39 chr13 8648343 8648472 -93224697 - L2 LINE L2 -6 3266 3132 328 313 48 54 chr13 8648524 8648671 -93224498 + MIR3 SINE MIR 55 200 -8 1807 166 7 7 chr13 8649413 8649721 -93223448 + AluJb SINE Alu 3 310 -2 1166 237 177 28 chr13 8649737 8650319 -93222850 - HAL1b LINE L1 -76 1272 604 947 278 130 33 chr13 8650445 8651548 -93221621 - HAL1 LINE L1 -632 1875 586 434 311 90 0 chr13 8651676 8651843 -93221326 + L2 LINE L2 2946 3127 -186 336 164 44 0 chr13 8652174 8652264 -93220905 + L1MD3 LINE L1 7725 7992 -3 181 325 0 0 chr13 8652889 8652929 -93220240 - L2 LINE L2 -95 3177 3138 2194 108 10 0 chr13 8653122 8653418 -93219751 - AluSx SINE Alu -13 299 1 2209 124 0 0 chr13 8653674 8653981 -93219188 + AluSx SINE Alu 1 307 -5 777 184 0 0 chr13 8655239 8655364 -93217805 - FLAM_A SINE Alu -8 125 1 188 300 0 0 chr13 8656017 8656067 -93217102 - L2 LINE L2 -6 3266 3217 2239 109 0 3 chr13 8656283 8656585 -93216584 - AluSg SINE Alu -9 301 1 24 0 0 0 chr13 8656834 8656858 -93216311 + AT_rich Low_complexity Low_complexity 1 24 0 225 211 0 0 chr13 8657265 8657322 -93215847 + T-rich Low_complexity Low_complexity 1 57 0 442 308 33 0 chr13 8658377 8658497 -93214672 - L2 LINE L2 -1 3312 3189 1171 128 30 134 chr13 8659165 8659463 -93213706 + AluYb8 SINE Alu 38 304 -14 22 35 0 0 chr13 8660822 8660851 -93212318 + AT_rich Low_complexity Low_complexity 1 29 0 247 257 14 0 chr13 8662011 8662081 -93211088 + CT-rich Low_complexity Low_complexity 2 72 0 2193 101 28 0 chr13 8662653 8662939 -93210230 + AluSc SINE Alu 1 294 -15 323 336 39 0 chr13 8663167 8663295 -93209874 + MER5A DNA MER1_type 57 189 0 809 258 47 13 chr13 8663411 8663644 -93209525 - MIR SINE MIR 0 262 22 536 231 142 35 chr13 8663700 8663869 -93209300 + MER3 DNA MER1_type 1 187 -22 497 273 145 18 chr13 8665547 8665774 -93207395 + MIR SINE MIR 1 256 -6 343 268 255 6 chr13 8665778 8665935 -93207234 + MIR SINE MIR 1 196 -66 243 333 83 0 chr13 8665965 8666061 -93207108 - MIR SINE MIR -133 129 26 431 205 4 19 chr13 8666999 8667239 -93205930 + AluJo SINE Alu 1 297 -15 2194 117 10 0 chr13 8669610 8669919 -93203250 - AluSx SINE Alu 0 312 1 252 331 91 34 chr13 8670141 8670316 -93202853 + L2 LINE L2 2110 2294 -1020 306 260 82 34 chr13 8670335 8670481 -93202688 + L2 LINE L2 3073 3225 -88 631 279 205 52 chr13 8670497 8671269 -93201900 + L2 LINE L2 2156 3126 -187 2333 101 0 0 chr13 8671269 8671565 -93201604 + AluSx SINE Alu 1 296 -16 631 279 205 52 chr13 8671565 8671788 -93201381 + L2 LINE L2 3126 3313 0 269 239 42 0 chr13 8671788 8671859 -93201310 + L2 LINE L2 2301 2374 -940 502 223 7 0 chr13 8671873 8672012 -93201157 - AluJb SINE Alu 0 312 173 331 321 3 20 chr13 8672030 8672252 -93200917 + C-rich Low_complexity Low_complexity 1 218 0 1753 118 8 0 chr13 8672536 8672782 -93200387 - AluSx SINE Alu -64 248 1 858 129 0 0 chr13 8673017 8673133 -93200036 + FLAM_C SINE Alu 1 116 -17 306 0 0 0 chr13 8673135 8673169 -93200000 + (CA)n Simple_repeat Simple_repeat 2 35 0 1787 161 0 24 chr13 8673617 8673909 -93199260 - AluJo SINE Alu -26 286 2 436 308 86 69 chr13 8674340 8674608 -93198561 - L2 LINE L2 0 3313 3032 636 65 13 0 chr13 8674608 8674685 -93198484 - MADE1 DNA Mariner 0 80 3 436 308 86 69 chr13 8674685 8674894 -93198275 - L2 LINE L2 -281 3032 2828 666 263 82 73 chr13 8675133 8675707 -93197462 + L2 LINE L2 2621 3184 -129 187 279 221 19 chr13 8675755 8675859 -93197310 + MIR SINE MIR 28 152 -110 497 222 152 41 chr13 8675971 8676142 -93197027 - MIR SINE MIR -42 220 31 530 353 27 20 chr13 8676835 8677130 -93196039 + LTR16C LTR ERVL 193 489 -2 985 230 59 0 chr13 8677450 8677689 -93195480 + MERVL LTR ERVL 2427 2679 -2806 2835 206 180 9 chr13 8677697 8678474 -93194695 + L1M4c LINE L1 27 936 -5448 1250 115 6 0 chr13 8678474 8678648 -93194521 + AluSc SINE Alu 132 306 -3 776 211 66 9 chr13 8678655 8678868 -93194301 + L1M4c LINE L1 923 1147 -5237 * 1864 190 37 19 chr13 8678867 8679455 -93193714 + L1M4c LINE L1 2121 2716 -3666 2272 219 30 52 chr13 8679491 8680087 -93193082 + L1M4c LINE L1 4057 4636 -1746 2153 139 0 0 chr13 8680087 8680388 -93192781 + AluSx SINE Alu 1 301 -11 2272 219 30 52 chr13 8680388 8680500 -93192669 + L1M4c LINE L1 4636 4749 -1633 1160 203 61 12 chr13 8680593 8680839 -93192330 - AluJo SINE Alu -10 302 45 279 54 0 0 chr13 8680839 8680876 -93192293 + (TTA)n Simple_repeat Simple_repeat 1 37 0 366 194 0 0 chr13 8680876 8680948 -93192221 - AluSp/q SINE Alu 0 303 232 315 83 0 0 chr13 8680953 8681001 -93192168 - AluY SINE Alu 0 302 255 1702 67 0 5 chr13 8681001 8681210 -93191959 - AluY SINE Alu -103 208 1 1810 125 0 0 chr13 8681210 8681449 -93191720 - AluSx SINE Alu -72 240 1 361 239 110 31 chr13 8681451 8681614 -93191555 - L1MEc LINE L1 -5105 1291 1116 2228 293 74 22 chr13 8681630 8681691 -93191478 - L1MEc LINE L1 -5380 1016 960 14954 130 42 26 chr13 8681691 8683624 -93189545 + Tigger1 DNA MER2_type 1 1902 -516 2424 77 3 7 chr13 8683624 8683923 -93189246 - AluSx SINE Alu -12 300 3 14954 130 42 26 chr13 8683923 8684248 -93188921 + Tigger1 DNA MER2_type 1902 2301 -117 1536 165 16 0 chr13 8684248 8684496 -93188673 - AluJo SINE Alu -17 295 44 14954 130 42 26 chr13 8684496 8684616 -93188553 + Tigger1 DNA MER2_type 2301 2418 0 2228 293 74 22 chr13 8684616 8685486 -93187683 - L1MEc LINE L1 -5436 960 37 2474 68 0 13 chr13 8686166 8686473 -93186696 - AluSg1 SINE Alu -6 303 1 886 173 32 16 chr13 8686667 8686852 -93186317 - MER53 DNA DNA 0 189 2 390 129 0 0 chr13 8687965 8688027 -93185142 + (T)n Simple_repeat Simple_repeat 1 62 0 234 225 0 56 chr13 8688730 8688801 -93184368 + MIR3 SINE MIR 95 161 -47 187 314 14 14 chr13 8689136 8689206 -93183963 + L2 LINE L2 3184 3253 -19 379 303 73 6 chr13 8689277 8689442 -93183727 - MIR SINE MIR -71 191 16 259 257 46 46 chr13 8689545 8689654 -93183515 + MLT1L LTR MaLR 495 603 -12 247 286 18 0 chr13 8690881 8690937 -93182232 - L2 LINE L2 -18 3254 3198 308 224 153 10 chr13 8691502 8691600 -93181569 - MER5A DNA MER1_type -59 130 19 335 289 91 25 chr13 8691724 8691845 -93181324 + MIR3 SINE MIR 41 169 -39 576 256 58 0 chr13 8691923 8692082 -93181087 + FLAM_A SINE Alu 4 169 0 7642 205 28 23 chr13 8692084 8694213 -93178956 + L1M1 LINE L1 3071 5211 -2354 958 179 0 0 chr13 8694217 8694385 -93178784 + L1M1 LINE L1 5533 5700 -1865 * 4305 190 3 23 chr13 8694358 8695214 -93177955 + L1P LINE L1 4707 5545 -2020 266 286 59 59 chr13 8695528 8695647 -93177522 - MER5A DNA MER1_type -50 139 21 339 316 76 13 chr13 8695751 8695909 -93177260 + MIR3 SINE MIR 34 201 -7 402 224 147 39 chr13 8696161 8696317 -93176852 + MER5B DNA MER1_type 6 178 0 281 296 96 30 chr13 8696540 8696675 -93176494 + MIR SINE MIR 63 206 -56 3080 224 73 24 chr13 8696744 8698206 -93174963 + L1ME1 LINE L1 5967 7582 -3 695 342 121 35 chr13 8698208 8699225 -93173944 - L2 LINE L2 -13 3259 2148 6279 233 21 17 chr13 8699288 8701738 -93171431 + L1MA5A LINE L1 4 2615 -4174 * 8600 129 21 21 chr13 8701737 8703369 -93169800 + L1MA5A LINE L1 4505 6139 -800 1898 129 30 0 chr13 8703369 8703640 -93169529 + AluSx SINE Alu 1 279 -33 8600 129 21 21 chr13 8703640 8704436 -93168733 + L1MA5A LINE L1 6139 6934 -5 414 337 143 19 chr13 8704457 8705071 -93168098 - L2 LINE L2 -1239 2075 1386 229 73 49 0 chr13 8705221 8705262 -93167907 + AluSx SINE Alu 260 302 0 236 387 93 17 chr13 8705267 8705569 -93167600 - L2 LINE L2 -2671 643 319 617 288 80 74 chr13 8706232 8706597 -93166572 + L2 LINE L2 2897 3263 -9 320 93 0 19 chr13 8706599 8706653 -93166516 + (TGAA)n Simple_repeat Simple_repeat 4 56 0 209 303 45 34 chr13 8706685 8706774 -93166395 + MIR SINE MIR 13 102 -160 2078 139 7 0 chr13 8707211 8707512 -93165657 - AluSx SINE Alu -9 303 1 1535 236 111 39 chr13 8708067 8708534 -93164635 + MLT1D LTR MaLR 1 501 -4 465 305 15 8 chr13 8708754 8708885 -93164284 - MIR SINE MIR -50 212 81 640 252 138 24 chr13 8708998 8709123 -93164046 + MIR SINE MIR 13 122 -140 201 39 0 0 chr13 8709123 8709149 -93164020 + (TGG)n Simple_repeat Simple_repeat 1 26 0 640 252 138 24 chr13 8709149 8709233 -93163936 + MIR SINE MIR 122 246 -16 237 303 0 0 chr13 8710120 8710186 -93162983 + T-rich Low_complexity Low_complexity 4 69 0 1550 221 65 3 chr13 8710740 8711296 -93161873 + L1MA10 LINE L1 5035 5609 -703 19670 164 22 54 chr13 8711302 8715624 -93157545 + L1MA3 LINE L1 11 3945 -3779 183 80 0 0 chr13 8715624 8715649 -93157520 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 19670 164 22 54 chr13 8715649 8719311 -93153858 + L1MA3 LINE L1 3945 7724 0 3404 166 16 55 chr13 8719311 8720075 -93153094 + L1MA10 LINE L1 5594 6332 -2 417 239 66 80 chr13 8720385 8720598 -93152571 + MER63A DNA MER1_type 1 210 0 247 298 97 0 chr13 8721820 8721944 -93151225 - MIR SINE MIR -19 243 108 189 107 0 0 chr13 8722008 8722036 -93151133 + (TG)n Simple_repeat Simple_repeat 1 28 0 304 355 43 7 chr13 8722044 8722182 -93150987 + L2 LINE L2 3129 3271 -1 393 224 66 0 chr13 8724060 8724212 -93148957 + (TA)n Simple_repeat Simple_repeat 2 163 0 2078 96 0 84 chr13 8724761 8725094 -93148075 - AluSg SINE Alu -5 305 1 663 347 89 44 chr13 8725167 8725740 -93147429 + L1M4 LINE L1 3390 3988 -2158 313 240 156 19 chr13 8726024 8726178 -93146991 + L1ME4a LINE L1 5933 6107 -14 2252 95 0 7 chr13 8726862 8727156 -93146013 - AluSx SINE Alu -20 292 1 467 247 7 91 chr13 8727864 8728018 -93145151 + MIR SINE MIR 1 141 -121 469 301 146 69 chr13 8728066 8728625 -93144544 + L2 LINE L2 2711 3312 -1 290 162 103 15 chr13 8728991 8729059 -93144110 + L1ME4a LINE L1 5574 5647 -474 373 315 103 14 chr13 8729067 8729280 -93143889 + L1ME4a LINE L1 5684 5915 -206 274 282 74 13 chr13 8729300 8729449 -93143720 + L1ME4a LINE L1 5964 6121 0 940 289 44 22 chr13 8729573 8729937 -93143232 + L1MC4a LINE L1 5512 5883 -1925 246 205 48 84 chr13 8731457 8731540 -93141629 + L2 LINE L2 3137 3216 -56 232 200 0 0 chr13 8732387 8732432 -93140737 - MER117 DNA MER1_type -152 45 1 265 360 0 0 chr13 8734025 8734114 -93139055 + L2 LINE L2 2658 2746 -568 1070 104 0 0 chr13 8784120 8784255 -93088914 + AluSg/x SINE Alu 156 290 -22 1896 134 0 24 chr13 8784280 8784570 -93088599 + AluSx SINE Alu 26 308 -4 463 278 203 41 chr13 8786311 8786549 -93086620 + L1ME4a LINE L1 5577 5775 -346 1940 119 59 7 chr13 8786549 8786835 -93086334 + AluSg SINE Alu 1 301 -9 463 278 203 41 chr13 8786835 8787068 -93086101 + L1ME4a LINE L1 5775 6117 -4 475 307 121 59 chr13 8787121 8787492 -93085677 + L3 LINE CR1 877 1270 -307 490 286 14 21 chr13 8787813 8787953 -93085216 - L2 LINE L2 0 3313 3175 502 222 24 16 chr13 8787956 8788082 -93085087 - MIR SINE MIR -46 216 90 695 269 82 26 chr13 8788953 8789221 -93083948 - L2 LINE L2 -4 3309 3027 373 230 87 24 chr13 8789259 8789385 -93083784 + MIR SINE MIR 61 194 -68 1646 108 0 5 chr13 8789450 8789664 -93083505 + AluSq SINE Alu 1 213 -100 382 94 166 1 chr13 8789668 8789755 -93083414 + L1MC2 LINE L1 6241 6343 -1 2110 148 0 0 chr13 8789792 8790102 -93083067 - AluSx SINE Alu -2 310 1 1402 92 0 0 chr13 8790924 8791097 -93082072 - AluSq SINE Alu -118 195 23 397 286 101 51 chr13 8791211 8791389 -93081780 - HAL1 LINE L1 -2286 221 35 313 250 0 34 chr13 8791389 8791477 -93081692 - LTR39 LTR ERV1 0 783 699 1160 203 18 31 chr13 8791540 8791826 -93081343 - LTR39 LTR ERV1 -501 282 1 637 76 0 0 chr13 8791842 8791921 -93081248 + AluS SINE Alu 2 80 -233 2471 84 3 0 chr13 8792338 8792648 -93080521 + AluY SINE Alu 1 311 0 21 0 0 0 chr13 8794438 8794459 -93078710 + AT_rich Low_complexity Low_complexity 1 21 0 262 260 135 31 chr13 8796458 8796554 -93076615 + L2 LINE L2 3137 3242 -30 192 121 0 190 chr13 8796850 8796908 -93076261 + L2 LINE L2 3267 3313 0 521 273 11 23 chr13 8797345 8797521 -93075648 - MER5B DNA MER1_type -3 175 2 664 274 148 56 chr13 8797671 8797826 -93075343 + L2 LINE L2 1556 1695 -1619 2232 110 3 13 chr13 8797826 8798127 -93075042 + AluSx SINE Alu 2 299 -13 664 274 148 56 chr13 8798127 8798580 -93074589 + L2 LINE L2 1695 2220 -1094 972 219 79 4 chr13 8798582 8798847 -93074322 + MER33 DNA MER1_type 1 285 -39 1909 160 7 114 chr13 8798917 8799373 -93073796 - MLT2D LTR ERVL 0 414 8 441 287 99 22 chr13 8799373 8799554 -93073615 + L2 LINE L2 2302 2496 -818 2039 165 39 31 chr13 8799558 8800103 -93073066 - MLT2A2 LTR ERVL 0 554 1 1036 291 121 14 chr13 8800105 8800534 -93072635 + L2 LINE L2 2498 2972 -342 1051 166 8 81 chr13 8800543 8800725 -93072444 - L1MA3 LINE L1 0 6305 6146 1849 191 3 0 chr13 8800725 8801029 -93072140 - AluJb SINE Alu -7 305 1 1051 166 8 81 chr13 8801029 8801105 -93072064 - L1MA3 LINE L1 -159 6146 6066 367 290 129 8 chr13 8801492 8801616 -93071553 + MIR SINE MIR 119 257 -5 248 347 60 40 chr13 8802110 8802309 -93070860 + L3 LINE CR1 64 266 -1311 202 350 52 0 chr13 8802442 8802539 -93070630 - MIR SINE MIR 0 262 161 428 271 0 8 chr13 8803106 8803224 -93069945 - LTR33 LTR ERVL -11 510 394 290 243 0 14 chr13 8803451 8803525 -93069644 - LTR33 LTR ERVL -448 73 1 2067 123 45 0 chr13 8803691 8803983 -93069186 + AluSx SINE Alu 1 305 -7 180 111 0 0 chr13 8803992 8804019 -93069150 + (A)n Simple_repeat Simple_repeat 1 27 0 443 244 36 48 chr13 8804019 8804187 -93068982 + Charlie8 DNA MER1_type 2 167 -2250 403 295 122 58 chr13 8804630 8804669 -93068500 + L2 LINE L2 2730 2765 -507 973 207 31 45 chr13 8804669 8804891 -93068278 + MER20 DNA MER1_type 1 219 0 403 295 122 58 chr13 8804891 8805303 -93067866 + L2 LINE L2 2765 3223 -49 235 362 80 55 chr13 8806610 8806809 -93066360 - MIR3 SINE MIR -3 205 2 520 278 112 18 chr13 8806847 8807083 -93066086 + MIR SINE MIR 9 255 -7 1895 180 103 5 chr13 8807333 8807711 -93065458 - Tigger7 DNA MER2_type -2065 422 8 543 168 0 0 chr13 8807808 8807903 -93065266 - AluSg/x SINE Alu -2 308 214 294 192 0 0 chr13 8807930 8807982 -93065187 + HERVK LTR ERVK 439 490 -6753 854 170 18 47 chr13 8807985 8808156 -93065013 + LTR5 LTR ERVK 804 969 0 1218 195 46 8 chr13 8808156 8808418 -93064751 + HERVK LTR ERVK 1 272 -6971 1187 157 0 0 chr13 8808400 8808598 -93064571 + HERVK LTR ERVK 423 620 -6623 * 2192 141 0 25 chr13 8808929 8809249 -93063920 + AluSx SINE Alu 1 312 0 1057 241 124 37 chr13 8809338 8809540 -93063629 + MLT1C LTR MaLR 1 184 -283 1901 161 0 0 chr13 8809540 8809825 -93063344 + AluJb SINE Alu 1 285 -27 1057 241 124 37 chr13 8809825 8810050 -93063119 + MLT1C LTR MaLR 184 465 -2 1740 126 0 4 chr13 8811007 8811253 -93061916 - AluSx SINE Alu -8 304 60 1706 94 76 10 chr13 8811253 8811579 -93061590 + LTR7 LTR ERV1 1 408 -42 465 94 0 0 chr13 8811591 8811655 -93061514 - AluJ/FLAM SINE Alu -247 65 2 447 355 6 6 chr13 8812623 8812789 -93060380 + MIR3 SINE MIR 37 202 -6 2129 113 3 7 chr13 8812968 8813261 -93059908 + AluSx SINE Alu 1 292 -20 2031 137 0 0 chr13 8817785 8818069 -93055100 + AluSx SINE Alu 11 294 -18 238 185 0 92 chr13 8818583 8818648 -93054521 + MST-int LTR MaLR 673 731 -920 346 155 31 210 chr13 8818735 8819026 -93054143 - L1MC4 LINE L1 0 8042 7804 639 240 91 68 chr13 8819419 8819758 -93053411 - MLT1G LTR MaLR -242 348 1 192 319 37 111 chr13 8819789 8819924 -93053245 + L2 LINE L2 3123 3247 -25 2331 107 10 0 chr13 8819944 8820253 -93052916 + AluSx SINE Alu 1 312 0 1321 227 40 73 chr13 8820442 8820922 -93052247 + MER101 LTR ERV1 11 474 0 2042 128 0 20 chr13 8821977 8822283 -93050886 + AluSx SINE Alu 1 300 -12 2642 37 0 0 chr13 8822548 8822843 -93050326 + AluY SINE Alu 1 295 -16 1601 197 0 3 chr13 8822857 8823152 -93050017 + AluJo SINE Alu 4 297 -15 1464 189 94 31 chr13 8823212 8823407 -93049762 - MER2 DNA MER2_type 0 345 121 2022 122 6 45 chr13 8823407 8823719 -93049450 - AluSx SINE Alu -12 300 1 1464 189 94 31 chr13 8823719 8823841 -93049328 - MER2 DNA MER2_type -224 121 8 2012 158 28 50 chr13 8823965 8824364 -93048805 - MLT1B LTR MaLR 0 390 1 311 0 26 0 chr13 8824541 8824580 -93048589 + (CA)n Simple_repeat Simple_repeat 2 41 0 1815 146 43 67 chr13 8824875 8825266 -93047903 + MLT1B LTR MaLR 9 390 0 387 348 42 70 chr13 8825767 8826126 -93047043 + L2 LINE L2 2906 3254 -18 209 237 0 0 chr13 8827213 8827251 -93045918 + L2 LINE L2 3215 3252 -20 296 260 207 12 chr13 8827703 8827872 -93045297 - MIR SINE MIR -12 250 49 220 238 53 19 chr13 8827940 8828047 -93045122 + MIR SINE MIR 83 202 -6 2067 218 98 33 chr13 8829085 8829687 -93043482 - LTR48B LTR ERV1 0 644 4 2546 53 7 3 chr13 8829710 8830010 -93043159 - AluY SINE Alu -10 301 1 1499 213 145 43 chr13 8830631 8831059 -93042110 + MLT2B1 LTR ERVL 3 386 -134 1951 160 71 0 chr13 8831059 8831384 -93041785 + MER7A DNA MER2_type 1 346 0 384 22 0 0 chr13 8831384 8831429 -93041740 + (TA)n Simple_repeat Simple_repeat 1 45 0 1499 213 145 43 chr13 8831429 8831469 -93041700 + MLT2B1 LTR ERVL 385 520 0 25 0 0 0 chr13 8831515 8831540 -93041629 + AT_rich Low_complexity Low_complexity 1 25 0 204 40 0 0 chr13 8831746 8831771 -93041398 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr13 8832380 8832401 -93040768 + AT_rich Low_complexity Low_complexity 1 21 0 975 169 0 0 chr13 8832984 8833138 -93040031 + FRAM SINE Alu 5 158 -8 2090 117 10 10 chr13 8833612 8833746 -93039423 + AluJb SINE Alu 1 134 -178 2204 110 7 3 chr13 8833746 8834037 -93039132 + AluSq SINE Alu 1 292 -21 2090 117 10 10 chr13 8834037 8834201 -93038968 + AluJb SINE Alu 133 299 -13 186 118 0 0 chr13 8834276 8834310 -93038859 + (TG)n Simple_repeat Simple_repeat 1 34 0 479 312 32 0 chr13 8834415 8834569 -93038600 + MIR SINE MIR 14 172 -90 322 272 126 0 chr13 8835285 8835388 -93037781 + MIR SINE MIR 66 181 -81 2132 125 32 35 chr13 8835680 8835724 -93037445 - L1MB2 LINE L1 -7 6164 6121 219 36 0 0 chr13 8835724 8835752 -93037417 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2415 61 0 0 chr13 8835752 8836032 -93037137 - AluY SINE Alu -31 280 1 2132 125 32 35 chr13 8836032 8836362 -93036807 - L1MB2 LINE L1 -48 6123 5790 666 133 71 0 chr13 8836550 8836663 -93036506 - L1MB2 LINE L1 -384 5799 5679 353 276 18 29 chr13 8839414 8839584 -93033585 + L1ME4a LINE L1 5954 6121 0 879 216 22 35 chr13 8839780 8840012 -93033157 + MIR SINE MIR 33 261 -1 890 132 0 22 chr13 8840116 8840252 -93032917 - FLAM_C SINE Alu 0 133 1 1552 205 10 3 chr13 8844085 8844373 -93028796 - AluJo SINE Alu -22 290 1 216 209 0 0 chr13 8844846 8844889 -93028280 + A-rich Low_complexity Low_complexity 2 44 0 2136 103 0 31 chr13 8844889 8845208 -93027961 + AluSx SINE Alu 1 309 -3 237 229 43 29 chr13 8845219 8845289 -93027880 - Charlie8 DNA MER1_type -2343 74 4 306 0 0 0 chr13 8845863 8845897 -93027272 + (CA)n Simple_repeat Simple_repeat 2 35 0 191 336 80 24 chr13 8845971 8846096 -93027073 + L2 LINE L2 2926 3057 -256 2251 123 0 0 chr13 8847440 8847749 -93025420 - AluSc SINE Alu 0 309 1 232 250 17 0 chr13 8848081 8848141 -93025028 + MIR SINE MIR 81 141 -121 184 268 18 0 chr13 8848965 8849021 -93024148 - MIR SINE MIR -61 147 91 2113 128 131 11 chr13 8849406 8849788 -93023381 + MSTA LTR MaLR 1 428 0 339 266 187 48 chr13 8849924 8850213 -93022956 - L2 LINE L2 -4 3268 2940 226 247 221 19 chr13 8850639 8850793 -93022376 + MIR SINE MIR 78 262 0 477 205 98 71 chr13 8851910 8852005 -93021164 + L1MC4 LINE L1 7813 7904 -138 2357 64 3 10 chr13 8852005 8852302 -93020867 + AluY SINE Alu 1 295 -16 477 205 98 71 chr13 8852302 8852430 -93020739 + L1MC4 LINE L1 7904 8042 0 211 74 0 0 chr13 8852453 8852480 -93020689 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 397 62 31 15 chr13 8852480 8852545 -93020624 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1622 116 0 4 chr13 8852645 8852877 -93020292 + AluY SINE Alu 66 296 -15 341 228 132 0 chr13 8852891 8853005 -93020164 + L1MC4 LINE L1 7914 8042 0 211 74 0 0 chr13 8853028 8853055 -93020114 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 703 66 19 9 chr13 8853055 8853161 -93020008 + (TTCC)n Simple_repeat Simple_repeat 2 108 0 1759 185 6 13 chr13 8853162 8853476 -93019693 - AluJo SINE Alu 0 312 1 3327 153 35 56 chr13 8853622 8854303 -93018866 - L1MC2 LINE L1 -377 5967 5301 521 281 63 74 chr13 8854416 8854878 -93018291 + MLT1J LTR MaLR 25 481 -30 197 369 29 39 chr13 8855065 8855168 -93018001 - L2 LINE L2 -33 3280 3179 242 175 79 0 chr13 8855975 8856038 -93017131 + CT-rich Low_complexity Low_complexity 4 71 0 21 71 0 0 chr13 8856688 8856730 -93016439 + GC_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr13 8856789 8856815 -93016354 + GC_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr13 8856984 8857015 -93016154 + GC_rich Low_complexity Low_complexity 1 31 0 2554 70 0 3 chr13 8858851 8859165 -93014004 - AluSq SINE Alu 0 313 1 235 343 111 0 chr13 8859556 8859655 -93013514 - L2 LINE L2 -12 3260 3151 239 327 136 32 chr13 8860093 8860344 -93012825 - L2 LINE L2 -414 2900 2624 1809 196 159 25 chr13 8860660 8861169 -93012000 + MER119 DNA MER1_type 7 583 0 223 338 31 12 chr13 8861197 8861357 -93011812 - L2 LINE L2 -1108 2206 2044 312 139 14 14 chr13 8862060 8862132 -93011037 + C-rich Low_complexity Low_complexity 1 72 0 254 0 83 0 chr13 8862146 8862182 -93010987 + T-rich Low_complexity Low_complexity 3 41 0 717 120 0 0 chr13 8862480 8862580 -93010589 - FLAM_C SINE Alu -12 131 32 1949 118 37 0 chr13 8862635 8862906 -93010263 + AluSx SINE Alu 2 282 -30 26 30 0 0 chr13 8863042 8863075 -93010094 + AT_rich Low_complexity Low_complexity 1 33 0 267 317 49 8 chr13 8863336 8863459 -93009710 - L2 LINE L2 -6 3307 3180 186 196 0 87 chr13 8863959 8864005 -93009164 + L2 LINE L2 3267 3308 -5 249 161 0 71 chr13 8864267 8864323 -93008846 - AluJo SINE Alu -165 137 86 * 259 167 21 0 chr13 8864292 8864340 -93008829 - Alu SINE Alu -20 282 234 614 167 0 0 chr13 8864343 8864451 -93008718 + AluSg/x SINE Alu 195 302 -7 272 268 180 10 chr13 8865911 8866105 -93007064 - MLT1J2 LTR MaLR -223 227 1 193 250 87 65 chr13 8866286 8866378 -93006791 + MER5C DNA MER1_type 1 94 -230 750 248 40 49 chr13 8866646 8866872 -93006297 + MER58A DNA MER1_type 1 224 0 29 0 0 0 chr13 8866944 8866973 -93006196 + AT_rich Low_complexity Low_complexity 1 29 0 210 258 0 0 chr13 8867024 8867086 -93006083 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 782 249 130 38 chr13 8867086 8867521 -93005648 - L2 LINE L2 -208 3105 2639 863 273 131 28 chr13 8868455 8869210 -93003959 + L1M4 LINE L1 2576 3408 -2738 * 1848 249 125 28 chr13 8869209 8869252 -93003917 - L1MC4a LINE L1 -1541 6267 6230 2268 90 0 7 chr13 8869252 8869551 -93003618 + AluSq SINE Alu 1 297 -16 1848 249 125 28 chr13 8869551 8870428 -93002741 - L1MC4a LINE L1 -1578 6230 5258 878 315 74 47 chr13 8870584 8871826 -93001343 - L1MC4a LINE L1 -1088 5058 3757 2044 106 47 0 chr13 8871826 8872101 -93001068 - AluSx SINE Alu -24 288 1 878 315 74 47 chr13 8872101 8872535 -93000634 - L1MC4a LINE L1 -2389 3757 3336 329 132 29 0 chr13 8872611 8872679 -93000490 - L1MB3 LINE L1 -1 6182 6113 435 76 0 0 chr13 8872684 8872750 -93000419 - L1 LINE L1 -966 5180 5115 617 62 0 0 chr13 8873123 8873203 -92999966 - AluS SINE Alu -233 80 1 233 298 53 7 chr13 8873203 8873354 -92999815 - L1P LINE L1 -2355 3791 3634 241 242 0 0 chr13 8873567 8873629 -92999540 - L1P LINE L1 -2741 3405 3344 372 103 29 0 chr13 8873712 8873780 -92999389 - L1MB3 LINE L1 -1 6182 6113 439 75 0 0 chr13 8873785 8873852 -92999317 - L1 LINE L1 -966 5180 5114 797 210 205 11 chr13 8874059 8874412 -92998757 - L1ME3A LINE L1 -24 6140 5724 490 332 34 12 chr13 8874821 8875099 -92998070 - L1MEc LINE L1 -3824 2398 2148 2350 84 0 0 chr13 8875188 8875486 -92997683 - AluY SINE Alu -13 298 1 312 263 111 47 chr13 8875600 8875790 -92997379 - HAL1b LINE L1 -501 847 646 482 213 142 0 chr13 8875809 8875936 -92997233 + MER105 DNA DNA 56 200 -4 621 293 47 89 chr13 8875947 8876656 -92996513 - HAL1b LINE L1 -744 1531 53 203 196 22 0 chr13 8876667 8876713 -92996456 + T-rich Low_complexity Low_complexity 3 49 0 317 308 58 0 chr13 8876779 8876899 -92996270 - MER5B DNA MER1_type -32 146 20 489 250 16 0 chr13 8877085 8877209 -92995960 - L1MD2 LINE L1 -18 6341 6216 858 176 72 21 chr13 8878082 8878275 -92994894 - L1MD2 LINE L1 -135 6224 6022 1002 204 43 88 chr13 8878275 8878673 -92994496 - L1M4 LINE L1 -1817 4329 3950 2094 184 76 4 chr13 8878686 8879158 -92994011 - MER73 LTR ERVL -12 632 127 434 151 143 8 chr13 8879210 8879336 -92993833 - L1M4 LINE L1 -2197 3949 3807 1448 174 8 11 chr13 8879338 8879602 -92993567 - AluJo SINE Alu 0 312 50 24 53 0 0 chr13 8879675 8879713 -92993456 + AT_rich Low_complexity Low_complexity 1 38 0 1496 99 12 62 chr13 8880244 8880486 -92992683 - MER30 DNA MER1_type 0 230 1 2456 83 3 3 chr13 8880962 8881274 -92991895 - AluSp SINE Alu 0 313 2 1818 185 3 7 chr13 8881279 8881582 -92991587 - AluJb SINE Alu -10 302 1 594 265 38 52 chr13 8882611 8882744 -92990425 + MIR SINE MIR 16 146 -116 2185 124 3 7 chr13 8882744 8883051 -92990118 + AluSx SINE Alu 1 306 -6 594 265 38 52 chr13 8883051 8883128 -92990041 + MIR SINE MIR 146 223 -39 250 255 202 11 chr13 8885910 8886004 -92987165 + L2 LINE L2 3151 3262 -10 387 309 75 15 chr13 8886609 8886998 -92986171 - L1M4 LINE L1 -1113 5033 4622 217 255 20 0 chr13 8887070 8887121 -92986048 + MIR SINE MIR 38 89 -119 1447 163 0 4 chr13 8887256 8887483 -92985686 + AluJb SINE Alu 86 311 -1 376 258 26 26 chr13 8889001 8889152 -92984017 - L1MD2 LINE L1 -2251 5557 5407 1893 158 21 0 chr13 8889154 8889445 -92983724 - AluJb SINE Alu -15 297 1 1978 254 106 40 chr13 8891060 8892198 -92980971 - L2 LINE L2 -1 3312 2102 1128 201 51 56 chr13 8892706 8893079 -92980090 - MLT1A2 LTR MaLR 0 374 4 427 275 77 34 chr13 8893902 8894109 -92979060 + L2 LINE L2 3098 3313 0 324 289 62 31 chr13 8894132 8894357 -92978812 - L1ME4a LINE L1 -238 5883 5652 21 36 0 0 chr13 8894449 8894477 -92978692 + AT_rich Low_complexity Low_complexity 1 28 0 246 312 65 39 chr13 8894661 8894815 -92978354 + L2 LINE L2 2326 2483 -831 204 357 31 10 chr13 8895417 8895515 -92977654 + L2 LINE L2 3173 3272 0 247 281 184 0 chr13 8895567 8895681 -92977488 - L1MCc LINE L1 -4638 2484 2350 * 3636 214 59 24 chr13 8895673 8896720 -92976449 - L1MD2 LINE L1 -2 6357 5274 728 264 107 63 chr13 8896731 8897479 -92975690 - L1MCc LINE L1 -4778 2344 1630 2051 130 10 7 chr13 8897479 8897786 -92975383 - AluSx SINE Alu -4 308 1 234 0 0 0 chr13 8897796 8897822 -92975347 + (TTG)n Simple_repeat Simple_repeat 2 27 0 728 264 107 63 chr13 8897822 8897836 -92975333 - L1MCc LINE L1 -5500 1622 1610 7256 26 25 0 chr13 8897836 8898808 -92974361 - L1PA4 LINE L1 -3 6152 5158 728 264 107 63 chr13 8898808 8898982 -92974187 - L1MCc LINE L1 -5512 1610 1129 1952 125 32 0 chr13 8899234 8899513 -92973656 - AluSx SINE Alu -24 288 1 1356 118 5 5 chr13 8899523 8899726 -92973443 - AluSg/x SINE Alu 0 312 110 505 284 16 37 chr13 8899820 8900063 -92973106 - L1MCc LINE L1 -5972 451 214 898 236 26 15 chr13 8900607 8900802 -92972367 + MIR SINE MIR 12 208 -54 285 342 51 8 chr13 8902426 8902575 -92970594 - MIR3 SINE MIR -67 141 3 703 163 16 31 chr13 8903897 8904026 -92969143 + FLAM_C SINE Alu 1 127 -16 278 231 82 82 chr13 8904469 8904616 -92968553 + MIR SINE MIR 66 212 -50 233 273 18 0 chr13 8905884 8905939 -92967230 - L2 LINE L2 -9 3304 3249 1717 181 6 22 chr13 8906644 8906673 -92966496 - AluJb SINE Alu -2 310 282 408 20 0 0 chr13 8906673 8906722 -92966447 + (TG)n Simple_repeat Simple_repeat 1 49 0 1717 181 6 22 chr13 8906722 8907007 -92966162 - AluJb SINE Alu -30 282 1 1481 129 63 94 chr13 8907178 8907528 -92965641 + MER44D DNA MER2_type 1 609 0 1403 189 120 53 chr13 8907634 8907979 -92965190 - LTR54B LTR ERV1 -1 497 114 1820 175 0 13 chr13 8907979 8908287 -92964882 - AluJb SINE Alu -8 304 1 1403 189 120 53 chr13 8908287 8908391 -92964778 - LTR54B LTR ERV1 -384 114 18 180 261 99 27 chr13 8908812 8908923 -92964246 + L2 LINE L2 3113 3231 -82 693 209 61 10 chr13 8910260 8910456 -92962713 - MER3 DNA MER1_type -2 207 2 745 149 15 30 chr13 8911388 8911522 -92961647 - FLAM_C SINE Alu 0 133 2 265 282 208 7 chr13 8911549 8911698 -92961471 + MIR SINE MIR 58 236 -26 253 367 66 53 chr13 8912389 8912615 -92960554 + L2 LINE L2 3044 3272 0 47 44 0 0 chr13 8913491 8913559 -92959610 + AT_rich Low_complexity Low_complexity 1 68 0 2130 104 3 17 chr13 8913839 8914137 -92959032 + AluY SINE Alu 1 294 -17 208 204 114 0 chr13 8914304 8914348 -92958821 + MIR SINE MIR 94 142 -66 701 229 64 4 chr13 8914667 8914903 -92958266 + L1M4 LINE L1 2786 3035 -3111 2241 109 0 13 chr13 8915645 8915958 -92957211 - AluSc SINE Alu 0 309 1 458 184 0 18 chr13 8915968 8915980 -92957189 - L1MA10 LINE L1 -2 6332 6321 3464 206 54 12 chr13 8915980 8916877 -92956292 - L1ME1 LINE L1 -5 6161 5229 759 216 83 10 chr13 8917868 8918072 -92955097 + MIR SINE MIR 13 231 -31 1826 136 38 35 chr13 8918080 8918447 -92954722 + THE1C LTR MaLR 6 373 -2 387 245 81 14 chr13 8918994 8919156 -92954013 - L1ME LINE L1 -396 5766 5587 23 0 0 0 chr13 8920752 8920775 -92952394 + AT_rich Low_complexity Low_complexity 1 23 0 207 384 81 0 chr13 8921535 8921621 -92951548 + L2 LINE L2 3102 3194 -78 508 249 40 90 chr13 8921747 8921948 -92951221 - MIR3 SINE MIR -15 193 3 1187 123 0 0 chr13 8922977 8923139 -92950030 + AluSg/x SINE Alu 132 293 -17 2617 250 91 53 chr13 8923242 8925574 -92947595 + L1MCc LINE L1 17 2258 -4683 2735 141 16 87 chr13 8925574 8926128 -92947041 - MLT2B2 LTR ERVL 0 515 1 2617 250 91 53 chr13 8926128 8926376 -92946793 + L1MCc LINE L1 2258 2495 -4446 2772 121 19 23 chr13 8926376 8926863 -92946306 - MER31A LTR ERV1 0 485 1 2617 250 91 53 chr13 8926863 8927292 -92945877 + L1MCc LINE L1 2495 3355 -3586 28 0 0 0 chr13 8927571 8927599 -92945570 + AT_rich Low_complexity Low_complexity 1 28 0 202 211 0 0 chr13 8928076 8928114 -92945055 + (TATG)n Simple_repeat Simple_repeat 4 41 0 1067 31 0 0 chr13 8928121 8928251 -92944918 + L1PA2 LINE L1 6026 6155 0 189 0 0 0 chr13 8928259 8928280 -92944889 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 445 316 72 35 chr13 8929642 8930184 -92942985 - HERV16 LTR ERVL -1494 3502 3158 36 23 0 0 chr13 8930327 8930370 -92942799 + AT_rich Low_complexity Low_complexity 1 43 0 36619 81 6 11 chr13 8930512 8933548 -92939621 - L1PA6 LINE L1 -1 6153 3103 2392 91 0 3 chr13 8933548 8933855 -92939314 - AluSp SINE Alu -7 306 1 36619 81 6 11 chr13 8933855 8936999 -92936170 - L1PA6 LINE L1 -3051 3103 11 705 342 47 2 chr13 8937024 8937433 -92935736 - HERV16 LTR ERVL -2564 3200 2774 282 314 58 35 chr13 8938252 8938478 -92934691 - LTR16B LTR ERVL -17 447 217 1468 151 177 57 chr13 8939096 8939481 -92933688 + MSTB1 LTR MaLR 2 432 0 206 280 96 56 chr13 8939768 8939893 -92933276 - L2 LINE L2 -7 3265 3136 1764 184 33 29 chr13 8940048 8940500 -92932669 - MER74A LTR ERVL -30 528 75 677 150 92 0 chr13 8940490 8940610 -92932559 - MSTB LTR MaLR -294 132 2 * 2161 114 7 16 chr13 8940750 8941057 -92932112 - AluSx SINE Alu -7 305 2 910 257 139 43 chr13 8941101 8941661 -92931508 - HAL1 LINE L1 -1628 879 266 3075 143 10 0 chr13 8941751 8942240 -92930929 - LOR1a LTR ERV1 -3 494 1 285 233 17 0 chr13 8943144 8943204 -92929965 + L2 LINE L2 3251 3311 -2 1903 208 36 32 chr13 8944226 8944722 -92928447 + MLT1D LTR MaLR 1 498 -7 270 209 70 12 chr13 8944830 8944916 -92928253 - MER5B DNA MER1_type 0 178 88 1645 218 11 6 chr13 8945432 8945795 -92927374 + MLT1A1 LTR MaLR 1 365 0 284 265 5 83 chr13 8945987 8946191 -92926978 + L1MCc LINE L1 1283 1470 -4953 491 243 58 12 chr13 8946192 8946365 -92926804 + L1MCa LINE L1 539 719 -6222 22 0 0 0 chr13 8946397 8946419 -92926750 + AT_rich Low_complexity Low_complexity 1 22 0 244 227 72 0 chr13 8948314 8948411 -92924758 - L1ME LINE L1 -284 5837 5734 272 315 30 39 chr13 8949533 8949765 -92923404 + L1MCa LINE L1 1238 1467 -4956 * 3373 221 88 80 chr13 8949749 8950152 -92923017 + L1MCa LINE L1 6 404 -5920 1903 109 44 4 chr13 8950152 8950427 -92922742 + AluSg1 SINE Alu 3 288 -21 3373 221 88 80 chr13 8950427 8951432 -92921737 + L1MCa LINE L1 404 1489 -4835 1339 201 23 0 chr13 8951432 8951696 -92921473 + AluSx SINE Alu 42 311 -1 1518 252 139 22 chr13 8951708 8953243 -92919926 + L1MCa LINE L1 1595 3330 -3096 2006 302 158 25 chr13 8953243 8954466 -92918703 + L2 LINE L2 1223 2608 -706 965 276 177 24 chr13 8954526 8954950 -92918219 + L2 LINE L2 2825 3313 0 267 216 11 0 chr13 8955025 8955113 -92918056 + L1ME4a LINE L1 6025 6113 -8 241 203 17 0 chr13 8955168 8955227 -92917942 + L1ME4a LINE L1 6060 6119 -2 373 191 45 0 chr13 8955337 8955426 -92917743 - L1MC4 LINE L1 0 8042 7950 2570 195 57 78 chr13 8955507 8956400 -92916769 - L1MC4 LINE L1 -410 7632 6759 549 225 28 0 chr13 8956561 8956703 -92916466 + PABL_A-int LTR ERV1 4801 4946 -1385 251 152 0 0 chr13 8956729 8956775 -92916394 + PABL_A-int LTR ERV1 3918 3963 -1052 29 0 0 0 chr13 8957112 8957141 -92916028 + AT_rich Low_complexity Low_complexity 1 29 0 726 203 213 102 chr13 8957444 8957946 -92915223 + LTR64 LTR ERVK 1 558 0 21 0 0 0 chr13 8958594 8958615 -92914554 + AT_rich Low_complexity Low_complexity 1 21 0 270 308 17 0 chr13 8958840 8958957 -92914212 - MER103 DNA DNA -45 121 3 2067 287 24 40 chr13 8959243 8960444 -92912725 - L2 LINE L2 -1 3312 2132 243 290 129 46 chr13 8960599 8961034 -92912135 - L2 LINE L2 -1147 2167 1697 339 136 45 0 chr13 8961062 8961128 -92912041 - L1MB3 LINE L1 -7 6176 6108 2041 166 60 5 chr13 8961132 8961530 -92911639 - MSTB1 LTR MaLR -12 420 1 3071 151 45 26 chr13 8961530 8962171 -92910998 - L1MB2 LINE L1 -70 6101 5449 4567 122 14 7 chr13 8962462 8963160 -92910009 + L1PA16 LINE L1 5455 6157 -9 418 294 238 14 chr13 8963258 8963686 -92909483 - L2 LINE L2 -535 2779 2256 266 326 59 38 chr13 8964191 8964335 -92908834 + MIR SINE MIR 23 165 -64 194 208 0 75 chr13 8964633 8964686 -92908483 + L2 LINE L2 3264 3312 -1 201 321 81 42 chr13 8966797 8966970 -92906199 + MIR SINE MIR 16 194 -68 1960 62 117 7 chr13 8966970 8967243 -92905926 + AluSc SINE Alu 1 303 -6 1036 76 0 0 chr13 8969559 8969691 -92903478 - AluSg/x SINE Alu -7 305 174 2265 104 0 17 chr13 8969867 8970166 -92903003 - AluSq SINE Alu -19 294 1 5225 53 20 3 chr13 8970200 8970859 -92902310 + L1PA7 LINE L1 5484 6153 -1 21 0 0 0 chr13 8973010 8973031 -92900138 + AT_rich Low_complexity Low_complexity 1 21 0 190 329 49 12 chr13 8973758 8973840 -92899329 - L2 LINE L2 -54 3218 3134 196 310 0 0 chr13 8974217 8974275 -92898894 - L2 LINE L2 -253 3060 3003 239 272 12 25 chr13 8974546 8974627 -92898542 - L1MC4 LINE L1 -149 7893 7814 326 0 0 0 chr13 8974648 8974683 -92898486 - U2 snRNA snRNA -153 35 1 252 308 104 50 chr13 8975050 8975232 -92897937 - L1MC/D LINE L1 -2082 5726 5535 234 172 62 16 chr13 8975285 8975349 -92897820 - L1MC/D LINE L1 -753 5393 5327 429 20 0 0 chr13 8975826 8975876 -92897293 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 75 0 0 chr13 8975877 8975930 -92897239 + AT_rich Low_complexity Low_complexity 1 53 0 210 37 0 0 chr13 8975999 8976026 -92897143 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr13 8978597 8978625 -92894544 + AT_rich Low_complexity Low_complexity 1 28 0 382 219 133 16 chr13 8978650 8978778 -92894391 - L1ME4a LINE L1 -17 6104 5962 23 0 0 0 chr13 8981355 8981378 -92891791 + AT_rich Low_complexity Low_complexity 1 23 0 314 306 0 0 chr13 8982425 8982510 -92890659 + MER103 DNA DNA 5 89 -77 2062 119 3 17 chr13 8983540 8983842 -92889327 + AluJb SINE Alu 1 298 -14 1586 222 76 58 chr13 8984657 8985225 -92887944 + L1MC4 LINE L1 7465 8042 0 1380 141 0 23 chr13 8985236 8985456 -92887713 + AluJo SINE Alu 85 299 -13 294 260 26 0 chr13 8985630 8985707 -92887462 + MER3 DNA MER1_type 5 83 -126 232 214 14 71 chr13 8985693 8985763 -92887406 - Charlie5 DNA MER1_type -2546 66 1 * 250 230 126 0 chr13 8990190 8990277 -92882892 + L2 LINE L2 3136 3233 -39 204 339 0 0 chr13 8990369 8990431 -92882738 + MIR SINE MIR 184 245 -17 202 275 112 34 chr13 8990625 8990803 -92882366 - L2 LINE L2 -252 3020 2829 192 250 67 0 chr13 8991013 8991073 -92882096 - MIR3 SINE MIR -28 180 117 1567 249 102 85 chr13 8991370 8992299 -92880870 - L1ME LINE L1 -5116 954 10 22 56 0 0 chr13 8992325 8992361 -92880808 + AT_rich Low_complexity Low_complexity 1 36 0 2361 100 7 0 chr13 8992554 8992863 -92880306 + AluSx SINE Alu 1 311 -1 1851 164 0 13 chr13 8993847 8994151 -92879018 + AluJo SINE Alu 1 300 -12 279 0 0 0 chr13 8994152 8994183 -92878986 + (CA)n Simple_repeat Simple_repeat 1 31 0 351 250 17 58 chr13 8994977 8995097 -92878072 + MER5A DNA MER1_type 63 177 -12 1281 97 97 5 chr13 8996937 8997123 -92876046 - AluJo SINE Alu -15 297 95 3633 130 57 0 chr13 8998319 8998894 -92874275 + MER39B LTR ERV1 1 608 -45 532 211 49 8 chr13 8999329 8999452 -92873717 + L1MC4a LINE L1 5523 5650 -471 624 244 185 33 chr13 8999452 8999887 -92873282 + MLT1G1 LTR MaLR 1 595 0 689 231 124 20 chr13 8999888 9000186 -92872983 + L1MC4a LINE L1 5641 5969 -1839 296 208 0 0 chr13 9000488 9000560 -92872609 - MLT2C2 LTR ERVL 0 464 393 1668 201 129 12 chr13 9000604 9001023 -92872146 - MLT2B1 LTR ERVL -50 470 3 485 253 100 3 chr13 9001025 9001172 -92871997 + MIR SINE MIR 15 176 -58 2240 83 14 7 chr13 9001240 9001530 -92871639 - AluSq SINE Alu -21 292 1 209 57 29 0 chr13 9001573 9001608 -92871561 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 542 288 84 14 chr13 9001609 9002039 -92871130 - L1M4 LINE L1 -2868 3278 2819 862 114 16 0 chr13 9002039 9002162 -92871007 - AluSg/x SINE Alu -12 298 174 33 25 0 0 chr13 9002413 9002453 -92870716 + AT_rich Low_complexity Low_complexity 1 40 0 899 281 69 59 chr13 9002702 9003867 -92869302 - L1MEc LINE L1 -2161 4054 2778 2103 125 3 0 chr13 9004007 9004296 -92868873 + AluSx SINE Alu 1 290 -22 636 211 19 115 chr13 9004388 9004501 -92868668 - MIR SINE MIR -13 249 172 2488 39 0 0 chr13 9004501 9004826 -92868343 + AluY SINE Alu 1 325 0 636 211 19 115 chr13 9004826 9004971 -92868198 - MIR SINE MIR -90 172 15 432 271 118 23 chr13 9005023 9005366 -92867803 - L1MEc LINE L1 -3764 2481 2117 23 0 0 0 chr13 9005373 9005396 -92867773 + AT_rich Low_complexity Low_complexity 1 23 0 2089 145 3 0 chr13 9005487 9005783 -92867386 + AluSx SINE Alu 1 297 -15 1229 190 50 75 chr13 9005934 9006318 -92866851 - MLT1A2 LTR MaLR 0 374 1 2184 122 7 0 chr13 9006559 9006855 -92866314 - AluSx SINE Alu -14 298 1 400 246 116 25 chr13 9007012 9007201 -92865968 - LTR50 LTR ERVL -5 790 584 1946 159 31 0 chr13 9007201 9007542 -92865627 + MER6 DNA MER2_type -10 795 -70 294 233 0 0 chr13 9007741 9007827 -92865342 + (TG)n Simple_repeat Simple_repeat 1 86 0 215 270 203 7 chr13 9007936 9008084 -92865085 + MIR SINE MIR 17 193 -69 1550 82 32 9 chr13 9009017 9009236 -92863933 + L1PB1 LINE L1 5927 6150 -1 327 317 10 0 chr13 9010277 9010378 -92862791 + MER5B DNA MER1_type 70 171 -7 718 201 12 6 chr13 9010459 9010623 -92862546 - MER5A DNA MER1_type -2 187 23 1339 181 47 56 chr13 9011024 9011384 -92861785 - L1MB3 LINE L1 -1 6182 5826 447 283 91 24 chr13 9011391 9011588 -92861581 + MIR SINE MIR 5 212 -50 2159 126 3 7 chr13 9012082 9012391 -92860778 + AluSx SINE Alu 1 308 -4 639 227 29 29 chr13 9012487 9012659 -92860510 + MER5B DNA MER1_type 3 174 -4 1861 251 8 23 chr13 9012706 9013229 -92859940 - L1M4 LINE L1 -1678 4468 3954 355 212 75 137 chr13 9014149 9014390 -92858779 - MLT1K LTR MaLR -2 586 361 1363 205 47 26 chr13 9014770 9015111 -92858058 + MER7A DNA MER2_type 1 346 0 324 0 0 0 chr13 9015876 9015912 -92857257 + (CA)n Simple_repeat Simple_repeat 2 37 0 2427 80 0 16 chr13 9016084 9016395 -92856774 - AluSp SINE Alu -7 306 1 239 318 0 0 chr13 9017837 9017900 -92855269 + MIR SINE MIR 95 157 -105 300 116 23 0 chr13 9018351 9018394 -92854775 + MER41C LTR ERV1 23 66 -488 243 111 28 0 chr13 9018390 9018426 -92854743 + MER41C LTR ERV1 25 61 -493 * 3138 131 82 0 chr13 9018426 9018916 -92854253 + MER41C LTR ERV1 25 554 0 221 258 31 82 chr13 9018942 9019039 -92854130 + MIR SINE MIR 92 183 -79 248 278 67 0 chr13 9019139 9019229 -92853940 - MER117 DNA MER1_type -37 160 65 2294 92 3 0 chr13 9019945 9020250 -92852919 - AluSp SINE Alu -4 309 4 7032 93 17 14 chr13 9020712 9021731 -92851438 + HERVH LTR ERV1 1966 2987 -4726 752 167 20 13 chr13 9021725 9021875 -92851294 + HERVH LTR ERV1 3140 3290 -4423 * 3334 122 6 2 chr13 9021865 9022365 -92850804 + HERVH LTR ERV1 3492 3993 -3720 4452 141 1 1 chr13 9022367 9023029 -92850140 + HERVH LTR ERV1 4488 5149 -2564 969 121 0 0 chr13 9023030 9023179 -92849990 + HERVH LTR ERV1 5600 5748 -1965 1850 74 8 0 chr13 9023210 9023468 -92849701 + HERVH LTR ERV1 7429 7688 -25 1603 143 32 11 chr13 9023477 9023498 -92849671 + L1PA15 LINE L1 5880 5899 -266 3474 62 2 9 chr13 9023498 9023949 -92849220 + LTR7 LTR ERV1 1 448 -2 1603 143 32 11 chr13 9023949 9024207 -92848962 + L1PA15 LINE L1 5899 6165 0 1069 138 13 154 chr13 9024736 9025034 -92848135 - LTR8 LTR ERV1 0 691 436 8414 95 20 18 chr13 9025134 9026385 -92846784 - HERVH LTR ERV1 -6459 1254 1 3491 62 5 7 chr13 9026387 9026836 -92846333 - LTR7 LTR ERV1 -2 448 1 2495 141 10 5 chr13 9026836 9027225 -92845944 - L1PA15 LINE L1 -260 5905 5515 321 96 19 0 chr13 9027222 9027274 -92845895 + L1PA15 LINE L1 5474 5526 -642 * 720 287 116 10 chr13 9027527 9027977 -92845192 + MLT1G LTR MaLR 13 549 -41 622 349 7 0 chr13 9028218 9028487 -92844682 - L1ME LINE L1 -356 5765 5495 1877 114 36 23 chr13 9028892 9029198 -92843971 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr13 9029319 9029340 -92843829 + AT_rich Low_complexity Low_complexity 1 21 0 342 343 30 18 chr13 9030983 9031152 -92842017 - MIR SINE MIR -6 256 86 266 174 0 0 chr13 9033512 9033558 -92839611 - MLT2C2 LTR ERVL 0 554 509 249 65 0 0 chr13 9033578 9033609 -92839560 + MLT2C2 LTR ERVL 434 464 0 183 184 0 0 chr13 9033617 9033655 -92839514 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 2044 196 43 5 chr13 9033660 9034058 -92839111 - MLT2C2 LTR ERVL -48 416 4 414 349 9 5 chr13 9034427 9034642 -92838527 - L1ME2 LINE L1 -107 6126 5911 1387 256 45 8 chr13 9034714 9035233 -92837936 - L1ME2 LINE L1 -457 5776 5239 904 188 4 2 chr13 9035236 9035482 -92837687 - AluJb SINE Alu -17 295 2 603 238 72 18 chr13 9035488 9035711 -92837458 - L1ME2 LINE L1 -983 5232 4998 1934 170 89 25 chr13 9035763 9036168 -92837001 - Tigger2a DNA MER2_type -3 431 1 358 284 5 59 chr13 9036559 9036672 -92836497 - L1ME2 LINE L1 -4576 1820 1721 1918 154 0 6 chr13 9036672 9036984 -92836185 - AluSx SINE Alu -2 310 1 358 284 5 59 chr13 9036984 9037074 -92836095 - L1ME2 LINE L1 -4675 1721 1628 * 1583 192 60 6 chr13 9037070 9037419 -92835750 - L1MD1 LINE L1 0 6242 5875 539 242 80 105 chr13 9037408 9037846 -92835323 - L1ME2 LINE L1 -4756 1640 1214 * 1711 231 62 9 chr13 9039828 9040265 -92832904 + MLT1C LTR MaLR 8 467 0 1344 235 87 20 chr13 9040814 9041252 -92831917 - MLT1C LTR MaLR 0 467 1 698 208 127 34 chr13 9043003 9043390 -92829779 - MER31B LTR ERV1 0 543 1 276 264 104 32 chr13 9043494 9043619 -92829550 - MIR SINE MIR -71 191 58 293 230 127 56 chr13 9044156 9044282 -92828887 + MIR3 SINE MIR 23 157 -51 3345 288 171 29 chr13 9044915 9046871 -92826298 - L2 LINE L2 -1 3312 1060 316 266 36 27 chr13 9046896 9047007 -92826162 - MIR SINE MIR -93 115 16 1638 163 3 26 chr13 9047030 9047336 -92825833 + AluJo SINE Alu 1 299 -13 22 0 0 0 chr13 9047470 9047492 -92825677 + AT_rich Low_complexity Low_complexity 1 22 0 5573 116 19 26 chr13 9047635 9048344 -92824825 + L1PA13 LINE L1 4757 5467 -711 2249 87 3 6 chr13 9048344 9048656 -92824513 + AluY SINE Alu 1 311 0 5573 116 19 26 chr13 9048656 9049363 -92823806 + L1PA13 LINE L1 5467 6178 0 319 248 34 43 chr13 9049365 9049482 -92823687 - L1MEd LINE L1 -4919 1210 1095 243 231 81 46 chr13 9049607 9049780 -92823389 - L1MDa LINE L1 -4954 1469 1291 2536 119 14 5 chr13 9050181 9050552 -92822617 - THE1C LTR MaLR -1 374 1 10499 114 30 15 chr13 9050552 9052110 -92821059 - THE1C-int LTR MaLR 0 1580 1 2505 116 16 8 chr13 9052110 9052482 -92820687 - THE1C LTR MaLR 0 375 1 575 103 0 0 chr13 9052885 9052963 -92820206 + AluS SINE Alu 2 79 -233 274 268 78 13 chr13 9053064 9053217 -92819952 - L1MCa LINE L1 -5410 1016 854 393 121 0 30 chr13 9054215 9054281 -92818888 - MLT2A2 LTR ERVL 0 453 390 217 113 0 48 chr13 9054281 9054343 -92818826 + (TTTG)n Simple_repeat Simple_repeat 3 61 0 2035 190 55 65 chr13 9054343 9054848 -92818321 - MLT2B3 LTR ERVL -54 500 1 661 276 63 82 chr13 9055434 9056089 -92817080 - L1MEd LINE L1 -5021 1098 457 2018 102 0 4 chr13 9056489 9056764 -92816405 + AluSg SINE Alu 18 291 -19 184 329 73 12 chr13 9058082 9058164 -92815005 + MIR SINE MIR 97 183 -79 2105 106 13 3 chr13 9058531 9058833 -92814336 - AluSx SINE Alu -7 305 1 287 189 0 124 chr13 9062470 9062655 -92810514 + G-rich Low_complexity Low_complexity 3 164 0 302 229 57 0 chr13 9063460 9063530 -92809639 - MER5A DNA MER1_type -71 118 45 901 174 25 0 chr13 9064320 9064556 -92808613 + CT-rich Low_complexity Low_complexity 1 241 0 243 334 175 25 chr13 9065844 9066290 -92806879 + L2 LINE L2 2174 2686 -628 260 293 81 32 chr13 9066535 9066658 -92806511 + L2 LINE L2 2961 3089 -224 21 0 0 0 chr13 9067208 9067229 -92805940 + AT_rich Low_complexity Low_complexity 1 21 0 1146 176 40 22 chr13 9068906 9069133 -92804036 + MER46A DNA MER2_type 2 232 -4 23 0 0 0 chr13 9069356 9069379 -92803790 + AT_rich Low_complexity Low_complexity 1 23 0 238 312 78 7 chr13 9069398 9069552 -92803617 + MIR SINE MIR 20 184 -78 1277 123 33 5 chr13 9071120 9071331 -92801838 + MSTB1 LTR MaLR 179 395 -37 1336 130 10 91 chr13 9071477 9071521 -92801648 - L1MB4 LINE L1 -1 6179 6133 2304 95 3 7 chr13 9071521 9071815 -92801354 - AluSg SINE Alu -17 293 1 1336 130 10 91 chr13 9071815 9071964 -92801205 - L1MB4 LINE L1 -47 6133 6018 1661 126 0 0 chr13 9071964 9072195 -92800974 + AluSq SINE Alu 73 303 -10 1336 130 10 91 chr13 9072195 9072307 -92800862 - L1MB4 LINE L1 -162 6018 5898 307 275 20 10 chr13 9072488 9072636 -92800533 - L1MB4 LINE L1 -423 5698 5621 31 0 0 0 chr13 9072738 9072769 -92800400 + AT_rich Low_complexity Low_complexity 1 31 0 1731 171 37 3 chr13 9074044 9074342 -92798827 - AluJo SINE Alu -4 308 1 2364 116 0 0 chr13 9074343 9074653 -92798516 - AluSx SINE Alu -2 310 1 1198 192 108 16 chr13 9074881 9074952 -92798217 - LTR52 LTR ERVL -2 419 356 347 60 20 0 chr13 9074952 9075002 -92798167 + (CA)n Simple_repeat Simple_repeat 1 51 0 1198 192 108 16 chr13 9075002 9075311 -92797858 - LTR52 LTR ERVL -65 356 4 2191 283 46 35 chr13 9076732 9077917 -92795252 + L1M4 LINE L1 2218 3416 -2730 5305 167 73 41 chr13 9079495 9079829 -92793340 - L1MC2 LINE L1 0 6344 6022 9992 23 7 199 chr13 9079829 9081537 -92791632 + SVA Other Other 1 1380 -6 5305 167 73 41 chr13 9081537 9082336 -92790833 - L1MC2 LINE L1 -322 6022 5141 1932 154 0 7 chr13 9082336 9082648 -92790521 - AluSx SINE Alu 0 312 1 5305 167 73 41 chr13 9082648 9082982 -92790187 - L1MC2 LINE L1 -1203 5141 4819 962 264 75 20 chr13 9083184 9083479 -92789690 - L1ME3A LINE L1 0 6170 5860 1396 87 101 5 chr13 9083504 9083711 -92789458 + MER30 DNA MER1_type 4 230 0 613 199 20 139 chr13 9083725 9083926 -92789243 - MER58C DNA MER1_type -1 214 38 1161 239 139 21 chr13 9083946 9084422 -92788747 - L1ME3A LINE L1 -367 5803 5272 230 167 24 0 chr13 9084484 9084526 -92788643 - LTR67 LTR ERVL -9 548 506 1285 246 91 48 chr13 9084551 9084991 -92788178 - MLT2B1 LTR ERVL -61 459 1 246 225 45 22 chr13 9085034 9085123 -92788046 - LTR67 LTR ERVL -107 450 360 704 264 146 21 chr13 9085768 9086048 -92787121 - MLT1J LTR MaLR -175 336 22 25 23 0 23 chr13 9086075 9086099 -92787070 + AT_rich Low_complexity Low_complexity 1 25 -17 2296 101 3 0 chr13 9086099 9086397 -92786772 - AluSp SINE Alu -14 299 1 25 23 0 23 chr13 9086397 9086415 -92786754 + AT_rich Low_complexity Low_complexity 25 42 0 3453 163 3 24 chr13 9087169 9087783 -92785386 - L1PB4 LINE L1 -2 6154 5554 2344 148 50 36 chr13 9087788 9088371 -92784798 - L1PB4 LINE L1 -678 5478 4882 1632 173 21 7 chr13 9088716 9089000 -92784169 - AluJo SINE Alu -24 288 1 1890 142 0 4 chr13 9089454 9089721 -92783448 - AluSx SINE Alu -46 266 1 268 320 61 44 chr13 9089928 9089958 -92783211 - L1MC/D LINE L1 -304 5817 5789 3200 162 18 11 chr13 9089958 9090513 -92782656 + MER89 LTR ERV1 1 559 0 268 320 61 44 chr13 9090513 9090768 -92782401 - L1MC/D LINE L1 -332 5789 5618 319 245 21 64 chr13 9090933 9091027 -92782142 - LTR16A LTR ERVL -201 249 160 256 290 40 40 chr13 9091157 9091257 -92781912 - L2 LINE L2 -94 3178 3079 195 266 62 16 chr13 9091458 9091522 -92781647 + L2 LINE L2 3241 3307 -6 * 200 178 0 22 chr13 9091517 9091562 -92781607 - MIR SINE MIR -86 176 133 200 280 0 0 chr13 9091785 9091835 -92781334 - L2 LINE L2 -1384 1930 1881 2222 116 51 23 chr13 9094158 9094512 -92778657 + THE1B LTR MaLR 1 364 0 11793 97 5 1 chr13 9094512 9096086 -92777083 + THE1B-int LTR MaLR 1 1580 0 2041 118 91 21 chr13 9096086 9096426 -92776743 + THE1B LTR MaLR 1 364 0 256 322 0 11 chr13 9096431 9096521 -92776648 - L2 LINE L2 -3 3269 3181 * 270 264 118 0 chr13 9096520 9096630 -92776539 + MIR SINE MIR 90 212 -50 187 344 16 38 chr13 9096710 9096843 -92776326 - L3b LINE CR1 -300 1283 1154 2152 124 0 20 chr13 9096843 9097142 -92776027 - AluSq SINE Alu -20 293 1 187 344 16 38 chr13 9097142 9097194 -92775975 - L3b LINE CR1 -429 1154 1102 246 293 38 19 chr13 9097581 9097687 -92775482 + L1MC/D LINE L1 5681 5788 -2020 282 306 28 9 chr13 9098349 9098457 -92774712 - MIR SINE MIR -66 142 33 1816 146 48 0 chr13 9101039 9101339 -92771830 + AluSg SINE Alu 1 313 0 606 226 0 0 chr13 9102471 9102595 -92770574 - MER3 DNA MER1_type -5 204 81 21 0 0 0 chr13 9102601 9102622 -92770547 + AT_rich Low_complexity Low_complexity 1 21 0 2549 51 0 0 chr13 9103433 9103728 -92769441 - AluY SINE Alu -16 295 1 600 266 43 18 chr13 9103959 9104177 -92768992 + MIR SINE MIR 33 249 -13 1145 164 65 11 chr13 9104235 9104497 -92768672 - L1MA4 LINE L1 0 6300 6025 208 308 0 0 chr13 9104978 9105043 -92768126 + MIR SINE MIR 176 240 -22 1192 132 11 0 chr13 9105133 9105307 -92767862 + AluSg/x SINE Alu 137 312 0 27 0 0 0 chr13 9105635 9105662 -92767507 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr13 9106076 9106113 -92767056 + GC_rich Low_complexity Low_complexity 1 37 0 453 264 39 0 chr13 9106263 9106392 -92766777 + MIR SINE MIR 80 213 -49 539 316 56 5 chr13 9106526 9106741 -92766428 - MIR SINE MIR -30 232 7 1705 174 36 0 chr13 9106756 9107031 -92766138 + AluJo SINE Alu 4 288 -24 1088 172 0 0 chr13 9107816 9107985 -92765184 - AluJo SINE Alu -133 179 11 2299 113 0 28 chr13 9108218 9108537 -92764632 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr13 9110269 9110292 -92762877 + AT_rich Low_complexity Low_complexity 1 23 0 410 279 70 6 chr13 9110320 9110478 -92762691 + MIR SINE MIR 81 248 -14 316 279 66 0 chr13 9110554 9110676 -92762493 + L2 LINE L2 2418 2547 -767 3746 126 11 42 chr13 9110677 9111313 -92761856 + L1MC1 LINE L1 5718 6333 0 23 33 0 0 chr13 9111377 9111407 -92761762 + AT_rich Low_complexity Low_complexity 1 30 0 629 299 65 31 chr13 9111611 9112029 -92761140 + L2 LINE L2 2874 3305 -8 2014 161 13 40 chr13 9112336 9112714 -92760455 + MLT1B LTR MaLR 1 368 -22 522 197 197 0 chr13 9112923 9113050 -92760119 + LTR16C LTR ERVL 98 249 -242 802 189 25 51 chr13 9113284 9113321 -92759848 + LTR16C LTR ERVL 299 335 -156 1400 214 57 52 chr13 9113321 9113709 -92759460 - MLT1B LTR MaLR 0 390 1 802 189 25 51 chr13 9113709 9113867 -92759302 + LTR16C LTR ERVL 335 489 -2 241 220 99 22 chr13 9113867 9113948 -92759221 - MER103 DNA DNA -21 145 58 1602 83 0 0 chr13 9113948 9114141 -92759028 - AluSg/x SINE Alu -9 303 111 234 333 9 29 chr13 9114966 9115071 -92758098 + MIR SINE MIR 141 243 -19 219 252 135 54 chr13 9115151 9115262 -92757907 + MIR SINE MIR 21 140 -68 277 172 183 97 chr13 9115601 9115787 -92757382 - MER112 DNA MER1_type -4 256 55 903 109 28 186 chr13 9115816 9115873 -92757296 + MER7A DNA MER2_type 1 65 -2973 2278 105 3 0 chr13 9115873 9116168 -92757001 + AluSq SINE Alu 1 296 -17 903 109 28 186 chr13 9116168 9116358 -92756811 + MER7A DNA MER2_type 65 207 -139 * 1138 193 16 0 chr13 9116357 9116549 -92756620 + MSTD LTR MaLR 202 396 0 1988 151 40 81 chr13 9116741 9116794 -92756375 - MSTA LTR MaLR 0 428 374 3068 65 0 0 chr13 9116794 9117178 -92755991 - L1PA7 LINE L1 -5 6149 5766 1988 151 40 81 chr13 9117178 9117568 -92755601 - MSTA LTR MaLR -54 374 3 269 303 15 53 chr13 9117655 9117787 -92755382 + MER5B DNA MER1_type 51 177 -1 1966 139 35 30 chr13 9118388 9118756 -92754413 - L1MB3 LINE L1 0 6183 5814 292 190 35 0 chr13 9118798 9118856 -92754313 - L1MB2 LINE L1 -2 6169 6110 2649 137 17 2 chr13 9118945 9119369 -92753800 - L1MB3 LINE L1 -77 6106 5677 1827 143 18 0 chr13 9119921 9120201 -92752968 + AluSx SINE Alu 11 295 -17 994 248 98 10 chr13 9120346 9120652 -92752517 + MER46C DNA MER2_type 6 338 0 219 125 0 0 chr13 9121166 9121206 -92751963 + (TG)n Simple_repeat Simple_repeat 2 41 0 1333 264 71 68 chr13 9122405 9123126 -92750043 - L1MEd LINE L1 -4864 1255 533 238 285 102 36 chr13 9124693 9124830 -92748339 - L2 LINE L2 -46 3267 3122 3703 127 114 28 chr13 9125605 9126327 -92746842 - LTR1 LTR ERV1 0 785 2 480 238 79 37 chr13 9126428 9126592 -92746577 - MER91A DNA MER1_type -25 171 1 228 347 42 11 chr13 9128647 9128742 -92744427 + L2 LINE L2 3214 3311 -2 527 300 82 67 chr13 9129416 9129746 -92743423 + L2 LINE L2 2926 3260 -12 1955 123 0 20 chr13 9129936 9130236 -92742933 - AluSx SINE Alu 0 312 19 1921 102 0 0 chr13 9130456 9130712 -92742457 + AluSg SINE Alu 1 256 -54 745 208 118 65 chr13 9130816 9131095 -92742074 + MLT1D LTR MaLR 133 426 -79 3090 145 45 0 chr13 9131111 9131642 -92741527 - L1MC2 LINE L1 -169 6175 5621 343 136 0 0 chr13 9131642 9131701 -92741468 + MLT1D LTR MaLR 439 497 -8 602 250 48 27 chr13 9131816 9132004 -92741165 - MIR SINE MIR -4 258 67 238 110 24 37 chr13 9132993 9133075 -92740094 + (CCCG)n Simple_repeat Simple_repeat 4 84 0 355 190 52 69 chr13 9134330 9134446 -92738723 - MER5A DNA MER1_type -72 117 4 478 287 117 74 chr13 9135218 9135636 -92737533 - MLT1K LTR MaLR -2 586 151 1716 257 18 14 chr13 9136399 9136773 -92736396 - L1ME3 LINE L1 0 6162 5784 1754 178 83 3 chr13 9136773 9137111 -92736058 - MLT1A1 LTR MaLR 0 365 1 1716 257 18 14 chr13 9137111 9137226 -92735943 - L1ME3 LINE L1 -378 5784 5671 301 259 147 9 chr13 9137543 9137659 -92735510 - L1ME4a LINE L1 0 6121 5990 24 0 0 0 chr13 9137659 9137683 -92735486 + AT_rich Low_complexity Low_complexity 1 24 0 325 122 0 0 chr13 9138092 9138141 -92735028 + AluSg SINE Alu 248 296 -6 2345 118 49 3 chr13 9139253 9139601 -92733568 + THE1B LTR MaLR 1 364 0 192 313 47 0 chr13 9139843 9139907 -92733262 + MIR SINE MIR 156 222 -40 187 261 144 65 chr13 9139982 9140135 -92733034 + L2 LINE L2 2918 3082 -190 2311 61 3 3 chr13 9140247 9140540 -92732629 - AluY SINE Alu -5 306 14 1395 216 77 70 chr13 9140578 9141100 -92732069 + MER39 LTR ERV1 1 707 0 304 339 24 24 chr13 9141102 9141147 -92732022 - MIR3 SINE MIR -45 163 119 1431 172 62 44 chr13 9141147 9141385 -92731784 + MER2 DNA MER2_type 1 248 -96 2037 114 10 3 chr13 9141385 9141684 -92731485 - AluSq SINE Alu -12 301 1 1431 172 62 44 chr13 9141684 9141783 -92731386 + MER2 DNA MER2_type 248 344 0 304 339 24 24 chr13 9141783 9141861 -92731308 - MIR3 SINE MIR -88 120 40 2199 115 0 0 chr13 9142091 9142396 -92730773 + AluSc SINE Alu 1 305 -4 210 256 23 0 chr13 9142476 9142519 -92730650 - L2 LINE L2 -17 3255 3212 683 244 105 60 chr13 9142826 9143342 -92729827 + MER34C LTR ERV1 47 585 0 405 0 0 0 chr13 9143514 9143559 -92729610 + (TG)n Simple_repeat Simple_repeat 1 45 0 1702 177 0 19 chr13 9144175 9144492 -92728677 + AluJo SINE Alu 2 312 0 786 260 100 74 chr13 9145172 9145672 -92727497 - LTR33 LTR ERVL -8 513 1 216 0 0 0 chr13 9145952 9145976 -92727193 + (CA)n Simple_repeat Simple_repeat 1 24 0 2019 123 7 0 chr13 9146701 9146994 -92726175 + AluSx SINE Alu 1 295 -17 426 212 142 9 chr13 9147088 9147201 -92725968 + MIR SINE MIR 95 222 -40 428 240 48 24 chr13 9147249 9147374 -92725795 - MLT1J2 LTR MaLR -56 394 267 315 233 283 0 chr13 9148064 9148184 -92724985 - MIR SINE MIR -16 246 93 420 188 228 7 chr13 9149737 9149886 -92723283 - MER20B DNA MER1_type -596 187 6 4040 274 75 35 chr13 9151107 9151869 -92721300 + L1MEc LINE L1 46 776 -5620 2136 106 3 0 chr13 9151869 9152161 -92721008 - AluSp SINE Alu -20 293 1 4040 274 75 35 chr13 9152161 9153132 -92720037 + L1MEc LINE L1 776 1849 -4547 203 177 32 16 chr13 9153132 9153194 -92719975 + T-rich Low_complexity Low_complexity 1 63 0 5907 45 11 8 chr13 9153231 9153966 -92719203 - SVA Other Other 0 1386 650 1181 197 18 18 chr13 9153984 9154258 -92718911 + L1MEc LINE L1 1836 2109 -4287 3113 135 32 50 chr13 9154519 9155154 -92718015 + MER4B LTR ERV1 2 779 0 325 309 80 37 chr13 9155343 9155376 -92717793 + L2 LINE L2 2896 2926 -346 1902 140 14 0 chr13 9155376 91556