195 316 32 53 chr12 400 495 -143785960 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 619 682 -143785773 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 747 816 -143785639 - L2 LINE L2 -216 3097 3021 1254 199 3 94 chr12 1384 1600 -143784855 - AluJo SINE Alu -8 304 127 1600 111 0 0 chr12 1600 1825 -143784630 + AluSg/x SINE Alu 85 309 -3 1254 199 3 94 chr12 1825 1939 -143784516 - AluJo SINE Alu -185 127 4 653 106 0 11 chr12 1941 2035 -143784420 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 3371 3790 -143782665 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 3793 4082 -143782373 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 4083 4216 -143782239 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 4224 4283 -143782172 + Alu SINE Alu 246 304 -7 900 292 30 28 chr12 4341 4841 -143781614 + L1M4 LINE L1 3526 4026 -2120 1228 166 0 10 chr12 4841 5034 -143781421 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 5071 5375 -143781080 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 5693 6259 -143780196 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 7650 7849 -143778606 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 7858 7896 -143778559 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 7898 8191 -143778264 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 8913 8984 -143777471 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 9304 9338 -143777117 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 10345 10447 -143776008 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 10448 10626 -143775829 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 10697 10942 -143775513 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 11707 11830 -143774625 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 12514 12700 -143773755 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 12896 12946 -143773509 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 13531 13699 -143772756 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 14055 14096 -143772359 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 15070 15361 -143771094 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 15385 15498 -143770957 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 15499 15647 -143770808 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 16573 16911 -143769544 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 16911 16989 -143769466 + GA-rich Low_complexity Low_complexity 1 80 0 632 313 55 9 chr12 17536 17767 -143768688 - MIR SINE MIR -21 241 3 324 256 0 23 chr12 17846 17932 -143768523 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 18203 18370 -143768085 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 18423 18608 -143767847 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 19777 20356 -143766099 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 20713 21118 -143765337 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 21437 22375 -143764080 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 22761 22881 -143763574 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 23006 23085 -143763370 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 23661 23717 -143762738 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 24080 24253 -143762202 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 24934 25116 -143761339 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 26452 26590 -143759865 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 28429 28611 -143757844 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 28619 28892 -143757563 - L1ME3 LINE L1 0 6162 5879 1912 135 0 0 chr12 28920 29187 -143757268 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 29187 29290 -143757165 - HAL1 LINE L1 -197 2310 2214 532 297 170 3 chr12 29291 29661 -143756794 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 29674 31143 -143755312 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 32397 32445 -143754010 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 32498 32606 -143753849 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 33430 33604 -143752851 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 34327 34431 -143752024 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 34421 34645 -143751810 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 34805 35010 -143751445 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 35034 35508 -143750947 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 36501 36723 -143749732 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 37019 37176 -143749279 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 37733 37824 -143748631 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 37827 37964 -143748491 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 37991 38144 -143748311 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 38298 38615 -143747840 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 38737 38796 -143747659 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 38808 39011 -143747444 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 39028 39132 -143747323 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 40856 40937 -143745518 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 41141 41216 -143745239 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 42648 42668 -143743787 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 44562 44615 -143741840 - MIR SINE MIR -63 145 87 207 282 14 42 chr12 49373 49444 -143737011 - L2 LINE L2 -8 3264 3196 751 285 130 12 chr12 50970 51293 -143735162 - MLT1K LTR MaLR 0 588 228 366 311 155 24 chr12 52017 52223 -143734232 - L3 LINE CR1 -12 1565 1333 263 277 43 11 chr12 52386 52480 -143733975 - MIR SINE MIR -132 130 34 583 353 28 8 chr12 54974 55229 -143731226 - MLT1L LTR MaLR -17 598 339 180 0 0 0 chr12 55252 55272 -143731183 + (CCA)n Simple_repeat Simple_repeat 1 20 0 204 125 0 0 chr12 55327 55359 -143731096 + (TAA)n Simple_repeat Simple_repeat 3 34 0 489 232 271 34 chr12 55359 55536 -143730919 - MIR SINE MIR 0 262 44 283 246 184 9 chr12 56532 56646 -143729809 - MER117 DNA MER1_type -9 188 55 357 309 25 56 chr12 56664 56826 -143729629 - MIR3 SINE MIR -49 159 3 262 286 0 13 chr12 58201 58278 -143728177 + (TG)n Simple_repeat Simple_repeat 2 77 0 4300 141 49 59 chr12 58314 59715 -143726740 + pTR5 LTR ERV1 742 2438 0 962 241 56 25 chr12 60267 60553 -143725902 + MLT1F LTR MaLR 240 534 -8 256 238 114 9 chr12 60581 60686 -143725769 - MLT1L LTR MaLR -221 321 206 364 305 198 0 chr12 61785 61982 -143724473 - L1M4 LINE L1 -1882 4264 4029 1113 134 6 0 chr12 61990 62161 -143724294 - AluSg/x SINE Alu -15 295 124 2518 42 3 0 chr12 62161 62468 -143723987 - AluY SINE Alu -3 308 1 1021 343 50 48 chr12 62476 62850 -143723605 - BaEV-int LTR ERV1 -2711 3938 3566 315 0 0 0 chr12 62850 62885 -143723570 + (CCCTAA)n Simple_repeat Simple_repeat 1 35 0 1021 343 50 48 chr12 62885 63352 -143723103 - BaEV-int LTR ERV1 -3083 3566 3095 603 278 147 4 chr12 63877 64129 -143722326 + MER102b DNA MER1_type 51 338 -3 251 308 109 19 chr12 64191 64347 -143722108 - L3 LINE CR1 0 1577 1408 337 246 45 18 chr12 64631 64741 -143721714 - LTR18B LTR ERVL -234 380 268 522 96 0 0 chr12 64793 64866 -143721589 - LTR18B LTR ERVL -212 402 330 211 291 0 0 chr12 64882 64937 -143721518 + CT-rich Low_complexity Low_complexity 2 56 0 1274 323 40 32 chr12 64942 65701 -143720754 - BaEV-int LTR ERV1 -5731 2054 1290 576 333 25 45 chr12 65898 66255 -143720200 - BaEV-int LTR ERV1 -6779 1006 657 245 202 19 106 chr12 67873 67977 -143718478 + MIR3 SINE MIR 87 181 -27 206 125 0 54 chr12 68177 68233 -143718222 + (TTA)n Simple_repeat Simple_repeat 2 54 0 317 302 38 9 chr12 68612 68718 -143717737 - MIR SINE MIR -109 153 45 588 297 80 6 chr12 69230 69451 -143717004 + MIR SINE MIR 22 258 -4 181 330 66 47 chr12 70286 70392 -143716063 + L3b LINE CR1 1342 1449 -134 528 267 142 22 chr12 70870 71095 -143715360 - MIR SINE MIR -3 259 8 394 267 60 0 chr12 71452 71568 -143714887 - MIR SINE MIR -117 145 23 360 239 90 22 chr12 73350 73484 -143712971 - MIR3 SINE MIR -49 159 17 398 333 45 0 chr12 74310 74466 -143711989 - MIR SINE MIR -64 198 36 828 293 129 25 chr12 74847 75243 -143711212 - LTR16A LTR ERVL -7 443 7 268 296 133 104 chr12 75304 75544 -143710911 - L2 LINE L2 0 3272 3026 363 239 55 47 chr12 77092 77290 -143709165 - MIR SINE MIR -9 253 6 359 293 49 0 chr12 77553 77676 -143708779 - MIR3 SINE MIR -11 197 69 216 250 0 0 chr12 77677 77733 -143708722 + (TG)n Simple_repeat Simple_repeat 1 56 0 1082 265 21 11 chr12 77797 78080 -143708375 - LTR16C LTR ERVL -52 439 154 1622 138 12 108 chr12 78409 78742 -143707713 + AluJb SINE Alu 1 301 -1 372 196 19 84 chr12 79109 79216 -143707239 + MIR3 SINE MIR 100 199 -9 193 297 99 0 chr12 79266 79357 -143707098 - L2 LINE L2 -10 3303 3204 2347 98 0 6 chr12 79391 79706 -143706749 + AluSq SINE Alu 1 313 0 356 306 131 33 chr12 79711 79894 -143706561 - MIR SINE MIR -13 249 49 236 291 100 0 chr12 79995 80105 -143706350 - L2 LINE L2 -218 3054 2934 691 266 62 0 chr12 80442 80634 -143705821 - MIR SINE MIR -1 261 58 261 0 0 0 chr12 81831 81860 -143704595 + (TG)n Simple_repeat Simple_repeat 1 29 0 420 286 27 38 chr12 81897 82082 -143704373 + MIR3 SINE MIR 20 202 -6 261 354 82 38 chr12 82142 82300 -143704155 + L3 LINE CR1 338 502 -1075 371 326 21 0 chr12 82747 82888 -143703567 - L2 LINE L2 -272 3041 2898 493 206 70 106 chr12 82988 83187 -143703268 + MER20 DNA MER1_type 2 193 -26 1633 239 268 8 chr12 83204 83988 -143702467 - L2 LINE L2 -508 2806 1819 458 254 98 54 chr12 83988 84264 -143702191 + L1MC5 LINE L1 7510 7797 -164 479 229 118 7 chr12 84305 84458 -143701997 - L2 LINE L2 -1476 1838 1669 302 355 0 8 chr12 84576 84697 -143701758 - MIR SINE MIR 0 262 143 776 253 192 15 chr12 85182 85589 -143700866 - L2 LINE L2 0 3313 2835 470 295 109 6 chr12 85806 85989 -143700466 - MIR SINE MIR -6 256 55 216 305 0 24 chr12 86353 86435 -143700020 + (TATG)n Simple_repeat Simple_repeat 3 82 0 263 194 90 15 chr12 87683 87750 -143698705 + MIR SINE MIR 84 155 -107 291 312 91 26 chr12 87910 88064 -143698391 - L2 LINE L2 -3 3269 3106 547 267 86 16 chr12 88402 88589 -143697866 - MIR SINE MIR -19 243 44 537 345 17 2 chr12 88640 88838 -143697617 - MIR SINE MIR -19 243 43 403 306 67 22 chr12 89012 89146 -143697309 - MLT1G1 LTR MaLR -28 567 428 331 194 0 15 chr12 89196 89263 -143697192 - MLT1G1 LTR MaLR -280 315 250 474 348 98 14 chr12 89282 89710 -143696745 - L2 LINE L2 -1258 2056 1593 210 276 38 57 chr12 89769 89874 -143696581 - MIR SINE MIR -11 251 149 270 277 36 22 chr12 91387 91407 -143695048 - L1MA10 LINE L1 0 6334 6315 3182 228 51 15 chr12 91407 92745 -143693710 - L1ME1 LINE L1 -8 6158 4673 1670 139 41 60 chr12 93440 93756 -143692699 + AluJb SINE Alu 1 310 -2 206 143 29 0 chr12 94341 94376 -143692079 - MER91 DNA MER1_type -117 73 38 272 324 20 20 chr12 95019 95121 -143691334 - MIR SINE MIR -80 182 81 2561 142 51 10 chr12 95622 96037 -143690418 + MSTB1 LTR MaLR 1 432 0 193 267 0 0 chr12 96100 96145 -143690310 - L2 LINE L2 -23 3290 3246 281 272 62 0 chr12 96210 96291 -143690164 + MIR SINE MIR 17 102 -160 349 286 19 23 chr12 96693 97005 -143689450 + C-rich Low_complexity Low_complexity 1 311 0 248 130 22 0 chr12 97025 97071 -143689384 + CT-rich Low_complexity Low_complexity 1 47 0 9968 59 3 0 chr12 97193 98540 -143687915 - L1P LINE L1 -1772 4374 3024 274 224 105 26 chr12 98540 98616 -143687839 + MLT1J LTR MaLR 330 411 -100 806 120 0 0 chr12 98719 98827 -143687628 - FLAM_C SINE Alu -35 108 1 479 49 0 0 chr12 98830 98891 -143687564 + L1P LINE L1 2970 3030 -3116 305 344 0 16 chr12 99004 99132 -143687323 - MLT1J LTR MaLR -270 241 116 270 264 18 36 chr12 99233 99343 -143687112 - L2 LINE L2 -222 3050 2943 906 274 145 3 chr12 99347 99720 -143686735 - MLT1J2 LTR MaLR 0 450 25 309 296 43 17 chr12 100034 100149 -143686306 - MIR SINE MIR -58 204 87 879 157 0 0 chr12 100149 100283 -143686172 + AluJo SINE Alu 1 134 -178 1586 189 36 26 chr12 101825 102211 -143684244 + Charlie5 DNA MER1_type 2234 2623 0 216 341 54 16 chr12 102512 102641 -143683814 + L2 LINE L2 3139 3272 0 521 181 75 8 chr12 102832 102965 -143683490 + L2 LINE L2 2600 2741 -573 1270 234 31 31 chr12 103029 103388 -143683067 + MLT1E-int LTR MaLR 248 606 -765 466 269 147 103 chr12 103589 104237 -143682218 + MLT1E-int LTR MaLR 696 1371 0 1544 228 127 29 chr12 104241 104396 -143682059 + MLT1E LTR MaLR 2 140 -453 2223 133 0 0 chr12 104396 104697 -143681758 + AluSx SINE Alu 1 301 -11 1544 228 127 29 chr12 104697 105067 -143681388 + MLT1E LTR MaLR 140 579 -14 590 324 29 3 chr12 105079 105404 -143681051 + L2 LINE L2 2792 3125 -188 1395 209 0 0 chr12 105405 105673 -143680782 - AluJb SINE Alu -5 307 40 235 230 257 0 chr12 105695 105769 -143680686 + L2 LINE L2 3221 3313 0 223 267 60 26 chr12 106072 106188 -143680267 - MIR SINE MIR -59 149 30 6060 97 11 0 chr12 106973 108159 -143678296 - L1PA10 LINE L1 -5 6163 4962 510 246 22 22 chr12 108706 108840 -143677615 + MIR SINE MIR 20 153 -109 2955 217 71 19 chr12 108911 109709 -143676746 - L1ME1 LINE L1 -2 6164 5325 566 329 46 71 chr12 109725 110141 -143676314 + L2 LINE L2 2230 2628 -686 2153 140 13 0 chr12 110141 110448 -143676007 - AluSx SINE Alu -1 311 1 566 329 46 71 chr12 110448 110620 -143675835 + L2 LINE L2 2628 2803 -511 621 327 59 11 chr12 110661 110933 -143675522 + L2 LINE L2 2910 3194 -78 915 168 23 51 chr12 110958 111154 -143675301 - MER45B DNA AcHobo -541 1040 840 2161 104 0 4 chr12 111154 111433 -143675022 + AluSg SINE Alu 1 278 -32 200 35 35 0 chr12 111433 111462 -143674993 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 915 168 23 51 chr12 111462 111478 -143674977 - MER45B DNA AcHobo -739 842 833 2486 123 47 90 chr12 111697 112288 -143674167 - MER4D LTR ERV1 -337 566 1 505 303 40 21 chr12 112288 112504 -143673951 - L1M2 LINE L1 -600 5574 5349 341 364 64 27 chr12 112535 112925 -143673530 - L1M4 LINE L1 -764 5382 4982 1622 179 65 4 chr12 112939 113218 -143673237 + AluJo SINE Alu 4 299 -13 264 200 0 0 chr12 113486 113536 -143672919 + MIR3 SINE MIR 157 206 -2 531 247 47 65 chr12 113642 113693 -143672762 - MIR3 SINE MIR -6 202 152 669 172 28 50 chr12 113693 113873 -143672582 + MER5B DNA MER1_type 2 177 -1 531 247 47 65 chr12 113873 113991 -143672464 - MIR3 SINE MIR -56 152 36 185 265 29 15 chr12 114290 114358 -143672097 - L2 LINE L2 -210 3062 2994 393 237 61 9 chr12 115501 115615 -143670840 + MIR3 SINE MIR 86 205 -3 198 0 0 0 chr12 117105 117127 -143669328 + (TCTG)n Simple_repeat Simple_repeat 1 22 0 245 352 0 22 chr12 118920 119102 -143667353 + G-rich Low_complexity Low_complexity 1 178 0 * 274 245 11 87 chr12 119012 119196 -143667259 + (CGGGG)n Simple_repeat Simple_repeat 5 174 0 372 300 155 20 chr12 119446 119646 -143666809 - MIR SINE MIR -1 261 35 398 240 87 27 chr12 119744 119894 -143666561 - L1ME4a LINE L1 -2 6119 5961 404 175 25 0 chr12 121253 121333 -143665122 - MER45B DNA AcHobo -431 609 528 419 185 62 0 chr12 121334 121415 -143665040 - 5S rRNA rRNA -33 88 3 1700 239 95 14 chr12 121415 121918 -143664537 - MER45B DNA AcHobo -496 544 1 184 154 154 19 chr12 121918 121970 -143664485 + L2 LINE L2 3214 3272 0 325 281 125 23 chr12 122480 122608 -143663847 + MIR3 SINE MIR 22 162 -46 794 294 20 20 chr12 122704 122717 -143663738 - MIR SINE MIR 0 262 250 2285 112 3 0 chr12 122717 123020 -143663435 + AluSc SINE Alu 1 304 -5 794 294 20 20 chr12 123020 123258 -143663197 - MIR SINE MIR -11 251 11 330 195 0 0 chr12 123291 123368 -143663087 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 629 302 80 7 chr12 123721 123996 -143662459 + L3 LINE CR1 1282 1576 -1 2004 166 7 0 chr12 124198 124506 -143661949 + AluJo SINE Alu 1 310 -2 234 286 170 0 chr12 124764 124876 -143661579 - MIR3 SINE MIR -63 145 15 482 276 21 21 chr12 124939 125084 -143661371 - MIR SINE MIR -112 150 6 218 276 105 0 chr12 125385 125461 -143660994 + MIR SINE MIR 46 129 -133 218 281 34 45 chr12 125561 125650 -143660805 + MIR SINE MIR 17 104 -104 1522 83 98 5 chr12 125659 125864 -143660591 - AluY SINE Alu -87 224 1 861 223 31 49 chr12 125864 126151 -143660304 + L1ME2 LINE L1 5599 5880 -286 1929 179 0 0 chr12 126160 126456 -143659999 + AluJb SINE Alu 1 296 -16 18374 150 38 17 chr12 126469 130012 -143656443 + L1PB1 LINE L1 3 3470 -3397 1911 117 4 11 chr12 130012 130278 -143656177 + AluSp SINE Alu 50 313 0 18374 150 38 17 chr12 130278 132762 -143653693 + L1PB1 LINE L1 3470 6192 -675 1632 127 32 118 chr12 132762 133102 -143653353 + AluSq SINE Alu 1 311 -2 18374 150 38 17 chr12 133102 133791 -143652664 + L1PB1 LINE L1 6192 6865 -2 386 278 57 26 chr12 133774 133968 -143652487 + L1ME1 LINE L1 5822 6021 -145 * 333 228 0 0 chr12 133960 134039 -143652416 + L1ME2 LINE L1 6076 6154 -10 * 209 293 0 0 chr12 134066 134124 -143652331 - MER5A DNA MER1_type -45 144 87 1996 173 68 34 chr12 134146 134590 -143651865 + LTR2B LTR ERV1 32 490 0 195 259 37 0 chr12 134593 134647 -143651808 - MER5A DNA MER1_type -105 84 29 911 186 36 0 chr12 135226 135393 -143651062 + FRAM SINE Alu 4 176 0 231 357 43 45 chr12 135838 136142 -143650313 + L2 LINE L2 2924 3270 -2 208 329 14 0 chr12 136280 136350 -143650105 + MIR3 SINE MIR 123 193 -15 245 239 0 42 chr12 136539 136610 -143649845 + CT-rich Low_complexity Low_complexity 4 71 0 224 275 25 0 chr12 137251 137331 -143649124 + C-rich Low_complexity Low_complexity 2 83 0 228 331 16 24 chr12 141085 141209 -143645246 + CT-rich Low_complexity Low_complexity 2 124 0 2184 94 0 7 chr12 142947 143283 -143643172 + AluY SINE Alu 1 334 0 486 324 78 5 chr12 143379 143598 -143642857 + MIR SINE MIR 15 249 -13 1820 109 16 12 chr12 143630 143887 -143642568 + AluSx SINE Alu 55 312 0 198 405 34 6 chr12 144000 144178 -143642277 - L3b LINE CR1 -79 1504 1322 527 270 61 25 chr12 144941 145104 -143641351 - MIR3 SINE MIR -18 190 22 414 0 0 0 chr12 146270 146316 -143640139 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 347 0 40 chr12 147489 147613 -143638842 + MIR SINE MIR 33 151 -57 22 0 0 0 chr12 148225 148247 -143638208 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr12 148283 148317 -143638138 + GC_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr12 148689 148712 -143637743 + AT_rich Low_complexity Low_complexity 1 23 0 520 272 140 30 chr12 148804 149039 -143637416 + MIR SINE MIR 1 261 -1 320 348 81 36 chr12 149146 149589 -143636866 - L3 LINE CR1 -291 1286 824 1545 166 8 4 chr12 149621 149874 -143636581 - AluJo SINE Alu -17 295 42 430 271 153 20 chr12 149882 150229 -143636226 - L1MC4a LINE L1 -1635 6173 5781 457 301 77 17 chr12 150875 151083 -143635372 - MIR SINE MIR 0 262 28 478 294 27 0 chr12 151966 152112 -143634343 - HERVI LTR ERV1 -2573 5212 5063 270 257 40 0 chr12 152764 152838 -143633617 + MIR3 SINE MIR 89 165 -43 433 264 14 47 chr12 153256 153468 -143632987 - L1MC4a LINE L1 -1875 5933 5729 2797 189 49 5 chr12 153647 154240 -143632215 - L1M2c LINE L1 -6157 632 14 3340 138 5 0 chr12 154241 154814 -143631641 - Tigger1 DNA MER2_type -1236 1182 607 1971 116 14 7 chr12 155281 155574 -143630881 - AluSx SINE Alu -17 295 1 180 0 0 0 chr12 155983 156003 -143630452 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr12 157034 157058 -143629397 + AT_rich Low_complexity Low_complexity 1 24 0 1617 178 0 4 chr12 157094 157363 -143629092 - AluSx SINE Alu -44 268 1 255 320 5 104 chr12 157553 157658 -143628797 + L3 LINE CR1 668 742 -835 2075 98 11 0 chr12 157658 157959 -143628496 + AluSg SINE Alu 1 304 0 255 320 5 104 chr12 157959 158074 -143628381 + L3 LINE CR1 742 867 -710 1757 21 0 0 chr12 158095 158334 -143628121 - L1P LINE L1 -791 5355 5117 324 253 23 0 chr12 158358 158445 -143628010 + MIR SINE MIR 48 136 -126 308 291 91 94 chr12 158431 158750 -143627705 + L2 LINE L2 2914 3231 -41 * 368 386 55 15 chr12 158994 159320 -143627135 + L2 LINE L2 2439 2777 -537 194 307 27 13 chr12 159700 159775 -143626680 + L2 LINE L2 3175 3250 -22 289 299 35 0 chr12 160327 160414 -143626041 + MIR3 SINE MIR 98 187 -21 417 239 46 23 chr12 160513 160643 -143625812 - L2 LINE L2 -1 3271 3139 589 323 22 35 chr12 160668 160900 -143625555 - MIR SINE MIR -19 243 15 218 343 0 14 chr12 162012 162085 -143624370 - L2 LINE L2 -1 3271 3200 186 286 79 0 chr12 162317 162380 -143624075 - L2 LINE L2 -19 3253 3186 283 301 165 5 chr12 163284 163484 -143622971 - MIR SINE MIR -3 259 21 209 214 45 107 chr12 163849 163961 -143622494 + MIR SINE MIR 17 121 -87 455 344 18 12 chr12 164603 164766 -143621689 - L2 LINE L2 0 3313 3150 1184 144 5 26 chr12 165031 165226 -143621229 + AluSx SINE Alu 1 191 -121 2166 95 3 16 chr12 165263 165567 -143620888 + AluSx SINE Alu 1 300 -12 2352 235 152 3 chr12 165885 166451 -143620004 + MLT1E1 LTR MaLR 5 654 0 350 276 35 55 chr12 167842 168041 -143618414 - L1MC5 LINE L1 -54 7907 7713 258 105 0 0 chr12 168050 168088 -143618367 + (A)n Simple_repeat Simple_repeat 1 38 0 1519 171 0 38 chr12 168090 168383 -143618072 - AluJo SINE Alu -30 282 1 29 84 0 0 chr12 169105 169176 -143617279 + GC_rich Low_complexity Low_complexity 1 71 0 198 118 0 0 chr12 169496 169530 -143616925 + (GGA)n Simple_repeat Simple_repeat 2 35 0 259 265 265 0 chr12 170536 170638 -143615817 - L2 LINE L2 0 3313 3185 238 331 107 22 chr12 170639 170817 -143615638 - MIR SINE MIR -38 224 32 433 305 0 16 chr12 170888 171133 -143615322 - MER5C DNA MER1_type 0 324 25 207 374 49 8 chr12 171898 172021 -143614434 - L2 LINE L2 -19 3294 3167 189 312 48 91 chr12 172705 172891 -143613564 + MIR3 SINE MIR 30 207 -1 212 160 0 60 chr12 173087 173137 -143613318 + CT-rich Low_complexity Low_complexity 1 47 0 542 238 89 12 chr12 173722 173890 -143612565 + MIR3 SINE MIR 14 194 -14 369 0 0 0 chr12 174246 174287 -143612168 + (TG)n Simple_repeat Simple_repeat 1 41 0 1558 196 21 7 chr12 175261 175552 -143610903 - AluJo SINE Alu -17 295 1 277 239 230 9 chr12 175576 175689 -143610766 + MIR SINE MIR 117 254 -8 848 196 7 0 chr12 175690 175838 -143610617 - FRAM SINE Alu -8 168 20 1304 172 12 124 chr12 176764 177102 -143609353 + AluJo SINE Alu 12 311 -1 280 179 26 0 chr12 177102 177180 -143609275 + GA-rich Low_complexity Low_complexity 1 80 0 660 311 58 9 chr12 177727 177952 -143608503 - MIR SINE MIR -21 241 6 324 256 0 23 chr12 178037 178123 -143608332 - MIR3 SINE MIR -30 178 95 381 335 12 48 chr12 178394 178561 -143607894 - MIR SINE MIR -6 256 96 947 189 22 11 chr12 178614 178799 -143607656 + MER5A DNA MER1_type 1 187 -2 299 344 139 35 chr12 179968 180547 -143605908 - L2 LINE L2 0 3272 2545 771 279 165 0 chr12 180904 181309 -143605146 - L2 LINE L2 -1203 2111 1640 1055 326 67 41 chr12 181628 182566 -143603889 + L2 LINE L2 2313 3271 -1 205 325 50 50 chr12 182952 183072 -143603383 + MIR SINE MIR 114 233 -29 195 215 139 25 chr12 183197 183276 -143603179 + MIR SINE MIR 67 154 -108 184 214 18 71 chr12 183852 183908 -143602547 - L3 LINE CR1 -33 1544 1492 417 289 35 52 chr12 184271 184444 -143602011 - MER5B DNA MER1_type -8 170 1 323 324 11 28 chr12 185125 185307 -143601148 + CT-rich Low_complexity Low_complexity 2 180 0 313 341 29 0 chr12 186643 186781 -143599674 - MIR3 SINE MIR -15 193 52 528 253 66 11 chr12 188620 188802 -143597653 - HAL1 LINE L1 -10 2497 2306 768 275 48 7 chr12 188810 189083 -143597372 - L1ME3 LINE L1 0 6162 5879 1893 132 4 0 chr12 189111 189377 -143597078 - AluSx SINE Alu -45 267 1 253 212 9 80 chr12 189377 189480 -143596975 - HAL1 LINE L1 -197 2310 2214 573 289 180 3 chr12 189481 189848 -143596607 - HAL1 LINE L1 -353 2154 1723 3248 279 97 18 chr12 189861 191330 -143595125 - HAL1 LINE L1 -845 1662 78 236 229 0 0 chr12 192585 192633 -143593822 - L2 LINE L2 -4 3309 3262 194 389 56 0 chr12 192686 192794 -143593661 + L3b LINE CR1 1340 1453 -130 323 167 23 92 chr12 193619 193793 -143592662 + C-rich Low_complexity Low_complexity 2 163 0 319 269 39 48 chr12 194516 194620 -143591835 - L2 LINE L2 -4 3268 3166 249 339 179 9 chr12 194610 194834 -143591621 + L2 LINE L2 2476 2737 -577 * 298 283 93 78 chr12 194994 195199 -143591256 + L2 LINE L2 3100 3307 -6 499 310 66 68 chr12 195223 195697 -143590758 - L2 LINE L2 -108 3205 2713 401 329 77 31 chr12 196690 196912 -143589543 - L1MC4 LINE L1 -382 7660 7429 268 299 210 6 chr12 197208 197365 -143589090 - MIR SINE MIR -6 256 68 212 275 0 66 chr12 197922 198013 -143588442 + GA-rich Low_complexity Low_complexity 1 85 0 791 175 36 0 chr12 198016 198153 -143588302 + FLAM_C SINE Alu 1 142 -1 340 320 176 0 chr12 198180 198333 -143588122 - MIR SINE MIR -76 186 7 632 353 95 16 chr12 198487 198804 -143587651 + L3b LINE CR1 1147 1488 -95 323 68 85 0 chr12 198926 198985 -143587470 + MADE1 DNA Mariner 3 66 -14 518 282 98 20 chr12 198997 199200 -143587255 - MIR SINE MIR -26 236 5 263 225 119 0 chr12 199217 199321 -143587134 - MIR SINE MIR -62 146 25 213 309 37 12 chr12 201045 201126 -143585329 - MIR SINE MIR 0 262 180 289 200 13 40 chr12 201330 201405 -143585050 - MIR SINE MIR -139 123 51 180 0 0 0 chr12 202837 202857 -143583598 + (CCCTG)n Simple_repeat Simple_repeat 2 21 0 190 226 132 19 chr12 204751 204804 -143581651 - MIR SINE MIR -63 145 87 192 77 0 0 chr12 208525 208551 -143577904 + (CCTG)n Simple_repeat Simple_repeat 4 29 0 207 282 14 42 chr12 209568 209639 -143576816 - L2 LINE L2 -8 3264 3196 195 316 32 53 chr12 210322 210417 -143576038 - L3b LINE CR1 -248 1335 1243 212 349 0 0 chr12 210541 210604 -143575851 - L2 LINE L2 -34 3279 3217 183 246 116 0 chr12 210669 210738 -143575717 - L2 LINE L2 -216 3097 3021 1266 201 3 88 chr12 211304 211520 -143574935 - AluJo SINE Alu -8 304 124 1600 114 0 0 chr12 211520 211747 -143574708 + AluSg/x SINE Alu 85 311 -1 1266 201 3 88 chr12 211747 211859 -143574596 - AluJo SINE Alu -188 124 4 653 106 0 11 chr12 211861 211955 -143574500 - AluJo SINE Alu -176 136 44 699 296 55 17 chr12 213291 213710 -143572745 + L1M4 LINE L1 3070 3504 -2642 1651 180 3 3 chr12 213713 214002 -143572453 + AluJb SINE Alu 21 309 -3 914 143 0 0 chr12 214003 214136 -143572319 + AluJb SINE Alu 1 133 -179 403 119 0 0 chr12 214144 214203 -143572252 + Alu SINE Alu 246 304 -7 1170 292 77 30 chr12 214261 214761 -143571694 + L1M4 LINE L1 3526 4070 -2076 2002 112 10 36 chr12 214761 214896 -143571559 + AluSx SINE Alu 1 138 -174 2541 40 0 0 chr12 214896 215195 -143571260 + AluY SINE Alu 10 308 -3 2002 112 10 36 chr12 215195 215364 -143571091 + AluSx SINE Alu 138 297 -15 1170 292 77 30 chr12 215364 215569 -143570886 + L1M4 LINE L1 4070 4264 -1882 849 245 56 25 chr12 216803 217089 -143569366 - MLT1F LTR MaLR -8 534 240 3915 142 49 59 chr12 217641 219042 -143567413 - pTR5 LTR ERV1 0 2438 742 262 286 0 13 chr12 219078 219155 -143567300 + (CA)n Simple_repeat Simple_repeat 2 77 0 373 309 25 56 chr12 220531 220693 -143565762 + MIR3 SINE MIR 3 159 -49 248 246 184 9 chr12 220711 220825 -143565630 + MER117 DNA MER1_type 55 188 -9 181 260 14 41 chr12 221695 221768 -143564687 + L2 LINE L2 3201 3271 -1 502 232 271 34 chr12 221821 221998 -143564457 + MIR SINE MIR 44 262 0 180 0 0 0 chr12 222082 222102 -143564353 + (TGG)n Simple_repeat Simple_repeat 1 20 0 534 349 28 8 chr12 222125 222380 -143564075 + MLT1L LTR MaLR 339 598 -17 181 262 119 12 chr12 224420 224504 -143561951 - L3 LINE CR1 -3 1574 1482 281 277 43 11 chr12 224874 224968 -143561487 + MIR SINE MIR 34 130 -132 391 311 155 24 chr12 225131 225337 -143561118 + L3 LINE CR1 1333 1565 -12 656 287 124 13 chr12 226070 226384 -143560071 + MLT1K LTR MaLR 240 588 0 1392 24 0 0 chr12 227463 227627 -143558828 + (TCCA)n Simple_repeat Simple_repeat 4 167 0 318 280 21 44 chr12 227942 228163 -143558292 + GA-rich Low_complexity Low_complexity 1 215 0 957 168 0 24 chr12 228837 229004 -143557451 + FRAM SINE Alu 2 164 -2 350 305 0 38 chr12 229020 229125 -143557330 + HAL1b LINE L1 1245 1345 -3 230 174 0 22 chr12 229557 229603 -143556852 + GA-rich Low_complexity Low_complexity 3 47 0 349 149 19 93 chr12 229646 229753 -143556702 - L1MA5 LINE L1 0 6300 6202 185 309 128 43 chr12 230190 230284 -143556171 - L3 LINE CR1 -72 1505 1404 314 370 45 19 chr12 230298 230452 -143556003 + L1ME4a LINE L1 5852 6009 -112 2528 40 7 0 chr12 230522 230825 -143555630 - AluY SINE Alu -5 306 2 225 286 0 0 chr12 230874 230923 -143555532 - L3 LINE CR1 -193 1384 1336 443 293 14 7 chr12 231765 231912 -143554543 + MER63A DNA MER1_type 63 210 0 435 371 38 24 chr12 232695 232908 -143553547 + L2 LINE L2 3098 3313 0 1611 131 35 46 chr12 233473 233756 -143552699 - AluJb SINE Alu 0 312 33 21 36 0 0 chr12 233903 233931 -143552524 + GC_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr12 234209 234243 -143552212 + GC_rich Low_complexity Low_complexity 1 34 0 559 257 115 40 chr12 235814 236040 -143550415 - MIR SINE MIR -15 247 5 494 295 81 59 chr12 236115 236489 -143549966 - L1ME4a LINE L1 -133 5988 5601 2529 182 25 2 chr12 236489 236934 -143549521 - L1MB3 LINE L1 -10 6173 5719 494 295 81 59 chr12 236934 237016 -143549439 - L1ME4a LINE L1 -520 5601 5522 24 0 0 0 chr12 237984 238008 -143548447 + AT_rich Low_complexity Low_complexity 1 24 0 1102 229 15 4 chr12 238996 239258 -143547197 + L1MB8 LINE L1 5874 6138 -40 685 312 113 27 chr12 239325 239890 -143546565 + L2 LINE L2 2700 3311 -2 237 282 141 0 chr12 239966 240037 -143546418 - MIR SINE MIR -65 197 117 209 373 13 0 chr12 240035 240110 -143546345 - MIR3 SINE MIR -130 78 3 * 331 307 81 32 chr12 240577 240763 -143545692 - MIR3 SINE MIR -56 206 12 297 269 81 62 chr12 242226 242386 -143544069 - MIR SINE MIR -1 261 99 307 261 49 12 chr12 242462 242588 -143543867 + MIR SINE MIR 64 200 -62 195 42 0 0 chr12 242936 242960 -143543495 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 347 354 111 0 chr12 243065 243209 -143543246 + L3b LINE CR1 1321 1480 -103 243 291 0 0 chr12 244850 244905 -143541550 + C-rich Low_complexity Low_complexity 5 59 0 659 262 38 29 chr12 247303 247513 -143538942 - MIR SINE MIR -50 212 1 1326 90 4 0 chr12 247621 247855 -143538600 + (TGGA)n Simple_repeat Simple_repeat 1 236 0 2422 51 0 3 chr12 248072 248368 -143538087 + AluY SINE Alu 1 295 -16 486 207 83 0 chr12 248577 248698 -143537757 - MIR SINE MIR -86 176 46 186 43 0 0 chr12 249120 249143 -143537312 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 713 238 117 26 chr12 252401 252632 -143533823 + MIR SINE MIR 9 260 -2 329 344 4 19 chr12 252667 252791 -143533664 + MIR SINE MIR 39 149 -59 234 378 0 0 chr12 253216 253298 -143533157 + L3b LINE CR1 1330 1411 -172 21 0 0 0 chr12 253833 253854 -143532601 + AT_rich Low_complexity Low_complexity 1 21 0 2098 123 0 13 chr12 255786 256094 -143530361 + AluSx SINE Alu 1 304 -8 229 213 5 190 chr12 256399 256615 -143529840 + L1MC4a LINE L1 5881 6056 -1752 539 217 109 22 chr12 257544 257682 -143528773 - MER6 DNA MER2_type 0 865 -5 203 272 48 97 chr12 259216 259319 -143527136 + MER5A DNA MER1_type 57 165 -24 641 278 20 7 chr12 260792 260943 -143525512 + MIR SINE MIR 2 154 -108 464 314 149 0 chr12 261093 261281 -143525174 + MIR SINE MIR 41 256 -6 244 204 9 157 chr12 262196 262304 -143524151 + L2 LINE L2 3220 3311 -2 435 288 108 0 chr12 262427 262566 -143523889 + MIR SINE MIR 104 257 -5 1579 97 4 25 chr12 264272 264510 -143521945 + MER41B LTR ERV1 1 233 -402 2656 108 18 13 chr12 264611 264890 -143521565 + MER41B LTR ERV1 236 520 -115 2113 106 0 0 chr12 264890 265236 -143521219 - AluSx SINE Alu 0 346 1 2656 108 18 13 chr12 265236 265353 -143521102 + MER41B LTR ERV1 520 635 0 6576 54 143 70 chr12 265792 266884 -143519571 + MER11A LTR ERVK 1 1266 0 219 125 175 0 chr12 266961 267001 -143519454 + L2 LINE L2 3267 3313 0 390 290 100 40 chr12 268794 268994 -143517461 + MIR SINE MIR 10 221 -41 500 264 156 27 chr12 269180 269514 -143516941 + L2 LINE L2 2497 2873 -441 954 267 83 55 chr12 269734 270191 -143516264 + L2 LINE L2 2843 3312 -1 1730 166 0 3 chr12 270631 270921 -143515534 - AluSx SINE Alu -21 291 3 423 218 99 14 chr12 270951 271093 -143515362 - L2 LINE L2 -1 3312 3159 2289 94 0 0 chr12 271442 271750 -143514705 + AluSg1 SINE Alu 1 308 -1 524 182 91 16 chr12 271884 272005 -143514450 - MER3 DNA MER1_type -4 205 76 229 148 37 111 chr12 272056 272110 -143514345 + MER3 DNA MER1_type 159 208 -1 * 451 174 43 65 chr12 272110 272154 -143514301 - MER3 DNA MER1_type -167 42 1 861 229 29 14 chr12 272252 272559 -143513896 + MER7A DNA MER2_type 1 337 0 569 129 11 11 chr12 272578 272671 -143513784 + Tigger2a DNA MER2_type 1 93 -341 374 243 0 0 chr12 273213 273287 -143513168 + FRAM/FAM SINE Alu 8 81 -85 243 163 20 0 chr12 273305 273354 -143513101 + L1MD3 LINE L1 7933 7982 -13 2085 99 0 17 chr12 273431 273733 -143512722 - AluSq SINE Alu -16 297 1 1871 166 78 24 chr12 274658 274825 -143511630 + MSTD LTR MaLR 1 158 -238 1885 131 3 17 chr12 274825 275122 -143511333 + AluJb SINE Alu 1 293 -19 1871 166 78 24 chr12 275122 275327 -143511128 + MSTD LTR MaLR 158 393 -3 5530 233 70 43 chr12 275445 275818 -143510637 + L1ME2 LINE L1 338 699 -5697 2199 116 0 0 chr12 275818 276121 -143510334 + AluSg SINE Alu 1 303 -7 1984 94 0 57 chr12 276121 276254 -143510201 + AluSc SINE Alu 1 140 -165 2247 78 0 3 chr12 276254 276547 -143509908 + AluY SINE Alu 1 292 -19 243 0 0 0 chr12 276551 276578 -143509877 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1984 94 0 57 chr12 276578 276761 -143509694 + AluSc SINE Alu 143 305 0 5530 233 70 43 chr12 276761 277145 -143509310 + L1ME2 LINE L1 699 1071 -5325 2280 117 0 0 chr12 277145 277454 -143509001 + AluSx SINE Alu 2 310 -2 5530 233 70 43 chr12 277454 278713 -143507742 + L1ME2 LINE L1 1071 2413 -3983 813 77 15 15 chr12 278713 278843 -143507612 + AluY SINE Alu 175 304 -7 9252 197 56 77 chr12 278844 281325 -143505130 + L1ME2 LINE L1 2362 4895 -1320 2170 66 0 0 chr12 281325 281596 -143504859 + AluY SINE Alu 33 303 -8 9252 197 56 77 chr12 281596 282091 -143504364 + L1ME2 LINE L1 4895 5272 -943 1659 146 0 71 chr12 282091 282413 -143504042 + AluJb SINE Alu 3 301 -11 9252 197 56 77 chr12 282413 282515 -143503940 + L1ME2 LINE L1 5272 5375 -840 315 273 108 0 chr12 282498 282637 -143503818 + L1ME2 LINE L1 5879 6032 -201 * 677 216 34 91 chr12 282658 282922 -143503533 + L1ME1 LINE L1 5899 6147 -19 1391 233 166 17 chr12 284761 285280 -143501175 + L2 LINE L2 1793 2388 -926 911 120 0 0 chr12 285283 285408 -143501047 + AluSq/x SINE Alu 1 125 -188 394 219 0 12 chr12 285434 285516 -143500939 + L2 LINE L2 2376 2456 -858 310 259 24 12 chr12 285487 285572 -143500883 - L2 LINE L2 -694 2620 2535 * 231 240 20 0 chr12 285696 285746 -143500709 - L2 LINE L2 -824 2490 2440 * 1119 236 97 95 chr12 285722 285834 -143500621 + L2 LINE L2 2609 2719 -594 2058 100 0 0 chr12 285834 286113 -143500342 + AluSx SINE Alu 3 281 -31 1119 236 97 95 chr12 286113 286722 -143499733 + L2 LINE L2 2719 3311 -2 728 281 41 27 chr12 289849 290070 -143496385 - MIR SINE MIR -38 224 1 241 304 107 14 chr12 290070 290182 -143496273 + MIR3 SINE MIR 79 204 -4 571 299 103 11 chr12 290889 291170 -143495285 + L1ME4a LINE L1 5610 5916 -205 676 264 83 25 chr12 291612 291840 -143494615 - MIR SINE MIR -8 254 5 2337 69 7 0 chr12 292063 292366 -143494089 + AluSq SINE Alu 1 305 -8 476 301 46 36 chr12 292641 292837 -143493618 + MIR SINE MIR 7 204 -58 216 97 0 0 chr12 293361 293392 -143493063 + (TCCCC)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr12 293913 293935 -143492520 + AT_rich Low_complexity Low_complexity 1 22 0 184 298 53 43 chr12 294144 294238 -143492217 + MIR SINE MIR 1 95 -167 3649 189 36 69 chr12 295866 296042 -143490413 + L1MC4a LINE L1 6888 7068 -740 664 178 85 8 chr12 296042 296160 -143490295 + FLAM_A SINE Alu 1 127 -6 3649 189 36 69 chr12 296160 296934 -143489521 + L1MC4a LINE L1 7068 7806 -2 1509 187 11 14 chr12 297129 297452 -143489003 - AluJo SINE Alu 0 322 1 725 312 16 28 chr12 297516 297766 -143488689 - MIR SINE MIR -10 252 6 2442 208 110 4 chr12 298577 299131 -143487324 - MER90 LTR ERV1 -1 613 1 617 250 0 59 chr12 299445 299597 -143486858 - MER5B DNA MER1_type -35 143 1 522 303 113 5 chr12 299606 299827 -143486628 - L3b LINE CR1 -235 1348 1104 482 365 6 6 chr12 300136 300303 -143486152 + MIR3 SINE MIR 20 186 -22 1843 82 49 98 chr12 300626 300954 -143485501 - AluSq SINE Alu -1 312 1 478 279 71 22 chr12 301028 301228 -143485227 - MIR SINE MIR -39 223 7 772 231 17 12 chr12 301228 301401 -143485054 + MER69A DNA AcHobo 4 177 0 290 131 262 0 chr12 303407 303468 -143482987 - MADE1 DNA Mariner -2 78 2 2080 211 117 20 chr12 303542 304083 -143482372 + MLT1E LTR MaLR 1 593 0 425 311 147 3 chr12 304226 304512 -143481943 + L1ME4a LINE L1 4965 5291 -855 388 236 145 37 chr12 304513 304755 -143481700 + L1ME4a LINE L1 5785 6052 -69 645 241 101 18 chr12 305327 305555 -143480900 + L1MB8 LINE L1 5932 6178 0 1803 113 0 8 chr12 305626 305873 -143480582 - AluSx SINE Alu -21 291 47 276 352 124 48 chr12 306009 306259 -143480196 + L3 LINE CR1 1099 1367 -210 955 204 11 0 chr12 306327 306513 -143479942 - MER5A DNA MER1_type -1 188 1 287 343 57 0 chr12 306732 306837 -143479618 - L2 LINE L2 -3 3310 3200 211 239 43 0 chr12 306912 306958 -143479497 - L2 LINE L2 -272 3041 2994 1208 123 16 0 chr12 307467 307654 -143478801 + L1PB1 LINE L1 5957 6146 -5 247 347 245 18 chr12 307824 309263 -143477192 - L2 LINE L2 -1231 2083 319 226 327 26 44 chr12 309912 310025 -143476430 + L3 LINE CR1 1449 1559 -18 422 230 120 0 chr12 312612 312712 -143473743 - FLAM_A SINE Alu -30 112 1 180 125 0 0 chr12 314636 314668 -143471787 + (TA)n Simple_repeat Simple_repeat 2 33 0 421 295 84 12 chr12 317339 317505 -143468950 + MIR SINE MIR 64 241 -21 422 274 85 24 chr12 317584 317748 -143468707 + MER5A DNA MER1_type 1 174 -15 599 202 9 0 chr12 319210 319319 -143467136 + MER81 DNA DNA 5 114 0 21 0 0 0 chr12 319623 319644 -143466811 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr12 319776 319816 -143466639 + AT_rich Low_complexity Low_complexity 1 40 0 1183 143 0 0 chr12 319979 320154 -143466301 + FRAM SINE Alu 1 167 -9 279 79 0 0 chr12 320311 320349 -143466106 + (T)n Simple_repeat Simple_repeat 1 38 0 859 186 17 29 chr12 320366 320538 -143465917 - FAM SINE Alu -5 170 1 587 311 33 6 chr12 321809 321989 -143464466 + MIR3 SINE MIR 3 187 -21 2196 105 0 10 chr12 322320 322624 -143463831 - AluSq SINE Alu -12 301 1 1394 172 22 0 chr12 323640 323907 -143462548 + L1MB4 LINE L1 5908 6180 0 2233 103 0 0 chr12 323915 324207 -143462248 + AluSx SINE Alu 1 292 -20 208 278 0 19 chr12 324882 324936 -143461519 + MIR SINE MIR 88 140 -122 278 251 50 112 chr12 325156 325335 -143461120 + MIR SINE MIR 36 203 -59 467 203 11 16 chr12 325647 325829 -143460626 + GA-rich Low_complexity Low_complexity 1 181 0 2194 102 0 10 chr12 326455 326758 -143459697 + AluSq SINE Alu 1 300 -13 430 319 112 11 chr12 327070 327258 -143459197 + L3 LINE CR1 1370 1576 -1 768 244 45 61 chr12 327796 328319 -143458136 + PABL_B LTR ERV1 1 667 0 30489 87 12 9 chr12 328405 334082 -143452373 + L1PA7 LINE L1 748 6467 -2 531 174 83 38 chr12 334280 334412 -143452043 + MER6B DNA MER2_type 1 138 -72 180 0 0 0 chr12 334865 334885 -143451570 + (T)n Simple_repeat Simple_repeat 1 20 0 235 135 0 0 chr12 334920 334957 -143451498 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 23 54 0 0 chr12 335680 335717 -143450738 + AT_rich Low_complexity Low_complexity 1 37 0 2065 134 10 13 chr12 336388 336693 -143449762 - AluJb SINE Alu -8 304 1 2158 127 0 0 chr12 336879 337179 -143449276 + AluSx SINE Alu 1 300 -12 449 292 120 23 chr12 338662 338878 -143447577 + MIR SINE MIR 20 256 -6 378 304 113 16 chr12 339383 339577 -143446878 + L1ME LINE L1 5552 5764 -357 527 165 11 0 chr12 339578 339669 -143446786 + MER6 DNA MER2_type 1 92 -773 * 1460 136 54 7 chr12 339661 339940 -143446515 + MER6 DNA MER2_type 574 865 0 887 273 23 19 chr12 340441 340701 -143445754 - MIR SINE MIR 0 262 2 1836 152 3 13 chr12 340767 341069 -143445386 + AluJb SINE Alu 1 299 -13 340 163 98 11 chr12 341672 341764 -143444691 - LTR37A LTR ERV1 -54 372 273 918 87 0 0 chr12 341780 341895 -143444560 + AluSq/x SINE Alu 1 115 -197 2279 99 0 0 chr12 342170 342464 -143443991 + AluSx SINE Alu 1 294 -18 229 175 0 0 chr12 342923 342963 -143443492 + HAL1b LINE L1 859 898 -450 1042 194 142 36 chr12 343046 343376 -143443079 - Tigger5 DNA MER2_type -1 2322 1 286 186 69 98 chr12 343694 343796 -143442659 - MIR SINE MIR -56 206 108 24 0 0 0 chr12 343814 343838 -143442617 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 69 8 chr12 343838 343969 -143442486 - MIR SINE MIR -122 140 2 321 241 51 0 chr12 344543 344622 -143441833 - L2 LINE L2 -31 3282 3200 2033 108 28 0 chr12 344626 344913 -143441542 - AluY SINE Alu -16 295 1 433 334 36 81 chr12 345084 345490 -143440965 - L2 LINE L2 -229 3043 2652 316 237 11 22 chr12 345600 345710 -143440745 + L1M2 LINE L1 1574 2060 -4323 1774 168 0 10 chr12 345710 346002 -143440453 + AluSx SINE Alu 1 289 -23 412 329 90 40 chr12 346106 346550 -143439905 - L2 LINE L2 -814 2500 2035 562 270 85 10 chr12 346629 346829 -143439626 + L2 LINE L2 3084 3298 -15 229 329 183 25 chr12 347294 347441 -143439014 + MIR3 SINE MIR 1 166 -74 1420 310 176 19 chr12 349086 349892 -143436563 - L2 LINE L2 -1 3312 2633 1709 171 0 11 chr12 349892 350200 -143436255 + AluJb SINE Alu 6 310 0 1420 310 176 19 chr12 350200 350631 -143435824 - L2 LINE L2 -680 2633 1876 2221 105 3 3 chr12 350633 350939 -143435516 + AluSx SINE Alu 1 306 -6 1195 263 60 75 chr12 352231 352816 -143433639 - L2 LINE L2 0 3313 2738 306 87 0 0 chr12 353629 353675 -143432780 + (A)n Simple_repeat Simple_repeat 1 46 0 1485 192 45 14 chr12 354443 354729 -143431726 + AluJo SINE Alu 1 295 -17 2297 122 0 0 chr12 355009 355313 -143431142 + AluSx SINE Alu 1 304 -8 1885 154 33 3 chr12 355821 356120 -143430335 + AluSx SINE Alu 3 310 -2 2158 130 0 0 chr12 356150 356450 -143430005 + AluSx SINE Alu 1 300 -12 191 273 136 57 chr12 356455 356631 -143429824 - L2 LINE L2 -844 2470 2281 2529 60 0 13 chr12 356998 357313 -143429142 + AluY SINE Alu 1 311 0 183 252 65 56 chr12 357318 357425 -143429030 - L2 LINE L2 -1386 1928 1821 23 54 0 0 chr12 357796 357833 -143428622 + AT_rich Low_complexity Low_complexity 1 37 0 2119 130 7 0 chr12 357846 358145 -143428310 + AluSx SINE Alu 1 301 -11 1741 183 0 10 chr12 358149 358439 -143428016 + AluJo SINE Alu 1 287 -25 755 221 6 0 chr12 358474 358632 -143427823 + L1MA10 LINE L1 6175 6333 -1 24 32 0 0 chr12 359796 359827 -143426628 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr12 360473 360505 -143425950 + (TG)n Simple_repeat Simple_repeat 2 33 0 315 91 0 232 chr12 361700 361799 -143424656 + MADE1 DNA Mariner 3 78 -2 193 122 0 61 chr12 361907 361956 -143424499 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr12 362384 362405 -143424050 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 362860 362881 -143423574 + AT_rich Low_complexity Low_complexity 1 21 0 2030 156 0 0 chr12 363555 363879 -143422576 + AluJo SINE Alu 1 324 0 26 0 0 0 chr12 364920 364946 -143421509 + AT_rich Low_complexity Low_complexity 1 26 0 332 277 80 15 chr12 365493 365630 -143420825 + L1MEd LINE L1 141 286 -5919 810 167 19 6 chr12 365765 365921 -143420534 + Charlie1b DNA MER1_type 54 211 -312 240 254 35 35 chr12 366026 366140 -143420315 + L1MEd LINE L1 1027 1140 -5065 2466 84 0 3 chr12 366178 366487 -143419968 + AluSq SINE Alu 1 308 -5 2035 139 10 0 chr12 366495 366796 -143419659 + AluJb SINE Alu 1 304 -8 1744 135 24 0 chr12 367016 367268 -143419187 + AluSx SINE Alu 40 297 -15 2003 135 154 5 chr12 367371 367742 -143418713 + MSTA LTR MaLR 1 426 -2 2311 101 10 0 chr12 368065 368361 -143418094 - AluSq SINE Alu -14 299 1 242 164 0 33 chr12 368384 368445 -143418010 - L1MC5 LINE L1 -50 7911 7853 2296 191 68 37 chr12 368499 369044 -143417411 + MER68 LTR ERV1 1 562 0 2332 78 7 0 chr12 369319 369614 -143416841 + AluSp SINE Alu 4 300 -13 853 229 97 64 chr12 370174 370294 -143416161 + MLT1F LTR MaLR 10 125 -417 1981 149 0 10 chr12 370294 370596 -143415859 - AluJb SINE Alu -13 299 1 853 229 97 64 chr12 370596 370832 -143415623 + MLT1F LTR MaLR 125 439 -103 2369 95 0 3 chr12 370832 371138 -143415317 + AluSg SINE Alu 1 305 -5 853 229 97 64 chr12 371138 371239 -143415216 + MLT1F LTR MaLR 439 535 -7 809 215 44 6 chr12 372014 372038 -143414417 + L1MEd LINE L1 2156 2178 -4037 2035 160 3 0 chr12 372038 372345 -143414110 + AluSg SINE Alu 1 308 -2 809 215 44 6 chr12 372345 372603 -143413852 + L1MEd LINE L1 2178 2406 -3809 2244 100 0 7 chr12 372879 373180 -143413275 - AluSx SINE Alu -13 299 1 23 0 0 0 chr12 373189 373212 -143413243 + AT_rich Low_complexity Low_complexity 1 23 0 35885 80 12 8 chr12 373215 379337 -143407118 + L1PA6 LINE L1 2 6152 -2 2219 114 3 0 chr12 379440 379738 -143406717 - AluSq SINE Alu -14 299 1 2467 68 0 0 chr12 379749 380042 -143406413 - AluSg1 SINE Alu -12 297 5 438 231 0 0 chr12 380163 380241 -143406214 - AluJ/FLAM SINE Alu -234 78 1 2219 95 10 0 chr12 380266 380561 -143405894 + AluSp SINE Alu 1 298 -15 2150 107 31 0 chr12 380573 380863 -143405592 + AluSx SINE Alu 1 299 -13 2429 59 0 0 chr12 381587 381907 -143404548 - L1PA7 LINE L1 -111 6043 5724 1016 118 0 0 chr12 382103 382238 -143404217 + AluSq/x SINE Alu 1 135 -177 2442 97 0 0 chr12 382238 382547 -143403908 + AluSx SINE Alu 1 309 -3 1530 168 60 3 chr12 383479 383764 -143402691 + AluJb SINE Alu 1 301 -11 2304 95 0 3 chr12 384057 384353 -143402102 + AluSc SINE Alu 1 295 -14 25 75 0 0 chr12 384654 384707 -143401748 + AT_rich Low_complexity Low_complexity 1 53 0 2333 78 10 0 chr12 384903 385196 -143401259 + AluY SINE Alu 1 296 -15 582 244 101 32 chr12 385692 385909 -143400546 - MIR SINE MIR 0 262 31 1641 155 18 14 chr12 387415 387692 -143398763 + AluJb SINE Alu 1 278 -34 1188 189 5 5 chr12 387720 387937 -143398518 + AluJo SINE Alu 85 301 -11 2500 85 0 0 chr12 387964 388271 -143398184 + AluSg SINE Alu 1 307 -3 269 333 93 0 chr12 388318 388447 -143398008 + MLT1L LTR MaLR 343 483 -132 2019 143 3 16 chr12 389107 389421 -143397034 + AluSg SINE Alu 1 310 0 582 206 56 103 chr12 389546 389779 -143396676 + L1MC4a LINE L1 6526 6747 -1061 191 270 16 48 chr12 389798 389861 -143396594 - L2 LINE L2 -799 2515 2455 1668 172 35 0 chr12 389886 390171 -143396284 + AluJb SINE Alu 1 295 -17 518 167 9 0 chr12 390185 390293 -143396162 + GA-rich Low_complexity Low_complexity 1 109 0 2028 134 10 3 chr12 390410 390700 -143395755 + AluSx SINE Alu 1 292 -20 404 331 165 36 chr12 390704 391463 -143394992 - L2 LINE L2 -1073 2241 1385 2369 85 0 0 chr12 391615 391910 -143394545 - AluY SINE Alu -16 295 1 479 199 38 61 chr12 393231 393362 -143393093 + FLAM_A SINE Alu 1 128 -5 3490 197 73 36 chr12 393624 394606 -143391849 + L1ME1 LINE L1 4559 5504 -662 2205 110 0 17 chr12 394606 394907 -143391548 + AluSx SINE Alu 1 296 -16 3490 197 73 36 chr12 394907 394920 -143391535 + L1ME1 LINE L1 5504 5515 -651 2382 72 16 0 chr12 394920 395225 -143391230 + AluY SINE Alu 1 310 -1 3490 197 73 36 chr12 395225 395477 -143390978 + L1ME1 LINE L1 5515 5756 -410 1926 150 0 3 chr12 395477 395770 -143390685 - AluJb SINE Alu -20 292 1 3490 197 73 36 chr12 395770 396081 -143390374 + L1ME1 LINE L1 5756 6161 -5 244 195 11 46 chr12 396845 396932 -143389523 + A-rich Low_complexity Low_complexity 4 87 0 1721 145 76 0 chr12 397244 397561 -143388894 + MER7A DNA MER2_type 1 339 -7 1534 153 16 70 chr12 397685 397831 -143388624 + AluJo SINE Alu 1 123 -189 1852 160 0 17 chr12 397831 398131 -143388324 + AluSx SINE Alu 1 295 -17 1534 153 16 70 chr12 398131 398297 -143388158 + AluJo SINE Alu 123 296 -16 1658 185 58 6 chr12 398300 398762 -143387693 + L1MB4 LINE L1 5594 6132 -48 497 197 50 131 chr12 398804 398866 -143387589 + MIR SINE MIR 29 94 -168 2068 109 13 3 chr12 398866 399168 -143387287 + AluSx SINE Alu 1 305 -7 497 197 50 131 chr12 399168 399303 -143387152 + MIR SINE MIR 94 210 -52 1023 264 96 84 chr12 399713 400201 -143386254 - L2 LINE L2 -5 3308 2815 2202 123 0 7 chr12 400527 400836 -143385619 + AluSx SINE Alu 1 307 -5 32548 57 10 3 chr12 401029 407135 -143379320 - L1PA5 LINE L1 0 6154 11 502 228 228 0 chr12 407458 407616 -143378839 + HAL1 LINE L1 271 464 -2043 2097 239 113 16 chr12 407651 408392 -143378063 + HAL1 LINE L1 1185 1997 -510 21 36 0 0 chr12 408400 408428 -143378027 + AT_rich Low_complexity Low_complexity 1 28 0 795 267 71 8 chr12 408497 408692 -143377763 + HAL1 LINE L1 2253 2467 -40 1579 169 38 28 chr12 408692 408982 -143377473 - AluJo SINE Alu -19 293 1 795 267 71 8 chr12 408982 409026 -143377429 + HAL1 LINE L1 2467 2507 0 2458 70 0 3 chr12 409093 409393 -143377062 + AluY SINE Alu 1 299 -12 862 199 45 30 chr12 409762 409963 -143376492 + L1ME3 LINE L1 5959 6162 0 196 241 0 37 chr12 410334 410388 -143376067 + L3b LINE CR1 1532 1583 0 1924 131 31 3 chr12 410403 410694 -143375761 + AluSx SINE Alu 1 299 -13 2028 134 0 23 chr12 410850 411149 -143375306 + AluSx SINE Alu 1 292 -20 23 65 0 16 chr12 411188 411220 -143375235 + AT_rich Low_complexity Low_complexity 1 33 -28 1944 122 3 40 chr12 411220 411404 -143375051 - AluSq SINE Alu -21 292 122 2371 91 3 10 chr12 411404 411711 -143374744 - AluSp SINE Alu -8 305 1 1944 122 3 40 chr12 411711 411829 -143374626 - AluSq SINE Alu -191 122 1 23 65 0 16 chr12 411829 411858 -143374597 + AT_rich Low_complexity Low_complexity 33 61 0 1845 154 0 14 chr12 412234 412520 -143373935 - AluJo SINE Alu -22 290 9 1597 119 5 0 chr12 412567 412785 -143373670 + AluSp SINE Alu 1 219 -94 829 100 0 0 chr12 412785 412895 -143373560 + AluSp/q SINE Alu 188 297 -16 28 61 0 0 chr12 412919 412968 -143373487 + AT_rich Low_complexity Low_complexity 1 49 0 2085 115 3 26 chr12 413062 413367 -143373088 + AluSg SINE Alu 1 298 -12 1993 155 0 10 chr12 413630 413934 -143372521 - AluJb SINE Alu -11 301 1 23 33 0 0 chr12 414059 414089 -143372366 + AT_rich Low_complexity Low_complexity 1 30 0 1311 88 0 0 chr12 414172 414332 -143372123 - AluSp SINE Alu -19 294 135 1394 151 138 30 chr12 414631 414935 -143371520 + MER1B DNA MER1_type 1 337 0 2307 75 31 0 chr12 415325 415618 -143370837 + AluSx SINE Alu 1 302 -10 25 102 0 0 chr12 415797 415885 -143370570 + AT_rich Low_complexity Low_complexity 1 88 0 2588 120 31 2 chr12 416565 416982 -143369473 - Tigger4(Zombi) DNA MER2_type 0 2731 2303 862 159 0 0 chr12 416983 417115 -143369340 + FLAM_C SINE Alu 2 133 0 287 150 0 67 chr12 417123 417183 -143369272 - Tigger4(Zombi) DNA MER2_type -2675 56 1 257 288 194 12 chr12 418390 418550 -143367905 - MER5A DNA MER1_type 0 189 1 240 143 0 0 chr12 419966 420008 -143366447 + (CGAGG)n Simple_repeat Simple_repeat 4 45 0 182 297 94 0 chr12 420480 420544 -143365911 + L2 LINE L2 2380 2449 -865 1572 183 34 10 chr12 420898 421154 -143365301 + MLT2D LTR ERVL 113 378 -36 225 0 0 0 chr12 421154 421179 -143365276 + (CA)n Simple_repeat Simple_repeat 2 26 0 1572 183 34 10 chr12 421179 421217 -143365238 + MLT2D LTR ERVL 378 414 0 920 255 91 25 chr12 421221 421541 -143364914 - MLT1H LTR MaLR -182 413 45 2257 104 0 10 chr12 421589 421887 -143364568 + AluSq SINE Alu 3 297 -16 5225 166 121 35 chr12 422823 422879 -143363576 - Charlie1a DNA MER1_type -1306 1455 1405 2311 95 0 3 chr12 422879 423175 -143363280 + AluSx SINE Alu 1 295 -17 5225 166 121 35 chr12 423175 423523 -143362932 - Charlie1a DNA MER1_type -1356 1405 1088 1598 152 47 34 chr12 423523 423820 -143362635 - AluJo SINE Alu -1 311 11 5225 166 121 35 chr12 423820 423955 -143362500 - Charlie1a DNA MER1_type -1673 1088 966 2257 105 3 0 chr12 423955 424249 -143362206 - AluSx SINE Alu -17 295 1 5225 166 121 35 chr12 424249 424967 -143361488 - Charlie1a DNA MER1_type -1795 966 88 532 192 60 60 chr12 425240 425422 -143361033 - L2 LINE L2 0 3313 3132 1652 192 0 38 chr12 425488 425806 -143360649 - AluJo SINE Alu -6 306 1 203 77 0 26 chr12 425969 426008 -143360447 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 2125 147 0 0 chr12 426029 426341 -143360114 + AluSx SINE Alu 1 312 0 837 187 0 0 chr12 426357 426491 -143359964 + FLAM_A SINE Alu 6 139 -3 2354 103 0 0 chr12 426527 426837 -143359618 + AluSx SINE Alu 1 310 -2 999 145 22 34 chr12 426853 427032 -143359423 - MER2 DNA MER2_type -168 177 1 1328 116 0 37 chr12 427335 427524 -143358931 - AluSg/x SINE Alu -23 289 108 635 85 0 0 chr12 427524 427606 -143358849 + AluSg1 SINE Alu 16 97 -212 187 286 0 18 chr12 427627 427683 -143358772 - L2 LINE L2 -665 2649 2595 4174 109 27 56 chr12 427870 428071 -143358384 - Tigger1 DNA MER2_type 0 2418 2213 2352 79 0 0 chr12 428071 428363 -143358092 - AluY SINE Alu -19 292 1 4174 109 27 56 chr12 428363 428861 -143357594 - Tigger1 DNA MER2_type -205 2213 1739 1036 65 0 0 chr12 428861 428985 -143357470 - AluSg/x SINE Alu -16 294 171 10588 122 20 44 chr12 428985 429176 -143357279 - Tigger1 DNA MER2_type -673 1745 1551 1715 171 31 3 chr12 429176 429469 -143356986 - AluJb SINE Alu -11 301 1 10588 122 20 44 chr12 429469 429593 -143356862 - Tigger1 DNA MER2_type -867 1551 1426 2271 92 10 3 chr12 429593 429887 -143356568 - AluSp SINE Alu -17 296 1 10588 122 20 44 chr12 429887 431338 -143355117 - Tigger1 DNA MER2_type -992 1426 19 212 190 70 10 chr12 432408 432480 -143353975 + MIR SINE MIR 113 189 -73 219 345 42 48 chr12 433112 433425 -143353030 - L2 LINE L2 -698 2616 2306 459 251 276 5 chr12 433703 433906 -143352549 - MIR SINE MIR 0 262 5 1874 162 7 0 chr12 433906 434209 -143352246 - AluJb SINE Alu -7 305 1 875 193 85 0 chr12 434220 434396 -143352059 - AluJo SINE Alu -24 288 98 2074 104 20 17 chr12 434456 434753 -143351702 + AluSx SINE Alu 3 300 -12 764 149 0 0 chr12 434904 435018 -143351437 + FLAM_C SINE Alu 2 115 -28 2376 93 3 0 chr12 435139 435439 -143351016 - AluSp SINE Alu -12 301 1 1848 159 57 21 chr12 435497 435880 -143350575 + L1MB8 LINE L1 5782 6178 0 2154 264 50 57 chr12 436190 436334 -143350121 - L2 LINE L2 -29 3284 3141 1848 153 32 0 chr12 436334 436616 -143349839 - AluJb SINE Alu -10 302 12 2154 264 50 57 chr12 436616 437082 -143349373 - L2 LINE L2 -172 3141 2673 2191 117 0 0 chr12 437082 437365 -143349090 + AluSx SINE Alu 1 283 -29 2154 264 50 57 chr12 437365 437443 -143349012 - L2 LINE L2 -640 2673 2596 600 228 8 0 chr12 437443 437570 -143348885 + FLAM_C SINE Alu 2 129 -4 2154 264 50 57 chr12 437570 438036 -143348419 - L2 LINE L2 -717 2596 2148 2542 72 0 0 chr12 438200 438504 -143347951 - AluY SINE Alu -7 304 1 591 156 0 0 chr12 438983 439079 -143347376 - FLAM_A SINE Alu -42 100 5 2422 80 0 22 chr12 439341 439653 -143346802 + AluSg SINE Alu 1 305 -5 915 166 13 6 chr12 439941 440098 -143346357 - FRAM SINE Alu -8 158 1 2237 109 0 13 chr12 440131 440434 -143346021 + AluSg SINE Alu 1 299 -11 2082 122 0 0 chr12 440679 440965 -143345490 - AluSp SINE Alu -7 306 21 1786 156 14 0 chr12 440968 441263 -143345192 - AluSx SINE Alu -13 299 1 735 130 0 0 chr12 441363 441471 -143344984 - FLAM_A SINE Alu -11 131 24 2171 102 7 23 chr12 441594 441897 -143344558 - AluSx SINE Alu -14 298 1 886 142 0 22 chr12 441901 442035 -143344420 - FLAM_C SINE Alu -2 131 1 1228 144 13 57 chr12 442875 443104 -143343351 - MER20 DNA MER1_type 0 219 1 2568 54 0 0 chr12 443358 443655 -143342800 - AluY SINE Alu -14 297 1 2431 60 0 10 chr12 443657 443956 -143342499 - AluY SINE Alu -15 296 1 2327 93 3 3 chr12 444044 444345 -143342110 - AluSx SINE Alu -11 301 1 2108 129 0 0 chr12 444508 444794 -143341661 - AluSg SINE Alu -11 299 14 260 154 0 0 chr12 445473 445512 -143340943 + MER21B LTR ERV1 126 164 -699 237 196 39 0 chr12 445574 445625 -143340830 - ALR/Alpha Satellite centromeric -58 114 62 281 157 36 42 chr12 445691 445857 -143340598 + (TATAA)n Simple_repeat Simple_repeat 3 167 0 277 279 6 24 chr12 445860 446025 -143340430 + (TTA)n Simple_repeat Simple_repeat 3 164 0 2046 141 3 13 chr12 446048 446217 -143340238 - AluJo SINE Alu -10 302 136 2244 124 0 0 chr12 446217 446523 -143339932 - AluSq SINE Alu -7 306 1 2046 141 3 13 chr12 446523 446658 -143339797 - AluJo SINE Alu -176 136 1 1286 154 35 95 chr12 446679 446718 -143339737 - L1MB2 LINE L1 -42 6129 6089 483 90 0 0 chr12 446718 446796 -143339659 + (TG)n Simple_repeat Simple_repeat 2 79 0 351 0 0 0 chr12 446795 446834 -143339621 + (TA)n Simple_repeat Simple_repeat 1 39 0 * 1286 154 35 95 chr12 446796 446834 -143339621 - L1MB2 LINE L1 -82 6089 6050 1597 137 12 4 chr12 446834 447083 -143339372 - AluSx SINE Alu -12 300 50 1286 154 35 95 chr12 447083 447244 -143339211 - L1MB2 LINE L1 -121 6050 5953 1925 106 22 99 chr12 447244 447566 -143338889 + AluSx SINE Alu 2 298 -14 1286 154 35 95 chr12 447566 447701 -143338754 - L1MB2 LINE L1 -218 5953 5812 2099 104 46 0 chr12 448050 448330 -143338125 + AluSx SINE Alu 1 293 -19 2144 128 20 0 chr12 448454 448752 -143337703 + AluSx SINE Alu 1 304 -8 291 28 0 0 chr12 449099 449135 -143337320 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1757 168 4 0 chr12 449136 449416 -143337039 - AluSx SINE Alu -31 281 1 744 294 127 17 chr12 449463 449755 -143336700 - LTR16A LTR ERVL -6 444 121 2417 151 34 5 chr12 452204 452615 -143333840 - L1MB3 LINE L1 -13 6170 5748 1285 204 0 13 chr12 452618 452853 -143333602 - AluJb SINE Alu -80 232 1 1643 104 79 156 chr12 452853 453054 -143333401 - L1M3 LINE L1 -509 5674 5459 1974 129 3 62 chr12 453054 453379 -143333076 - AluJb SINE Alu -6 306 1 1643 104 79 156 chr12 453379 453423 -143333032 - L1M3 LINE L1 -724 5459 5413 1981 166 0 3 chr12 453423 453736 -143332719 - AluJb SINE Alu 0 312 1 1643 104 79 156 chr12 453736 453921 -143332534 - L1M3 LINE L1 -770 5413 5294 1878 143 35 0 chr12 453921 454208 -143332247 - AluJb SINE Alu -15 297 1 1643 104 79 156 chr12 454208 454307 -143332148 - L1M3 LINE L1 -889 5294 5189 241 156 0 0 chr12 454309 454354 -143332101 - AluJo SINE Alu -3 299 255 1093 178 0 70 chr12 454354 454568 -143331887 - AluJo SINE Alu -113 199 1 1387 184 0 4 chr12 454568 454840 -143331615 - L1M3 LINE L1 -979 5167 4897 2183 127 0 6 chr12 454856 455170 -143331285 - AluJb SINE Alu 0 312 1 572 293 47 14 chr12 455422 455637 -143330818 - HERV16 LTR ERVL -2409 3076 2855 1647 298 82 24 chr12 455697 455783 -143330672 - HERV16 LTR ERVL -2430 2566 2486 2221 98 3 3 chr12 455783 456102 -143330353 - AluSg SINE Alu 0 310 1 1647 298 82 24 chr12 456102 456927 -143329528 - HERV16 LTR ERVL -2510 2486 1735 2079 88 0 4 chr12 456927 457201 -143329254 + AluSg SINE Alu 25 297 -13 1647 298 82 24 chr12 457201 457368 -143329087 - HERV16 LTR ERVL -3261 1735 1579 2129 104 10 3 chr12 457415 457712 -143328743 - AluSx SINE Alu -13 299 1 859 280 206 16 chr12 457767 458131 -143328324 - LTR16A LTR ERVL -6 444 12 2354 74 3 0 chr12 458170 458479 -143327976 + AluY SINE Alu 1 310 -1 250 265 84 0 chr12 458943 459026 -143327429 - MIR SINE MIR -66 196 107 262 263 41 67 chr12 459114 459308 -143327147 - L1ME4a LINE L1 -2 6119 5931 1876 144 7 0 chr12 459403 459694 -143326761 - AluJb SINE Alu -15 297 5 24 32 0 0 chr12 459707 459738 -143326717 + AT_rich Low_complexity Low_complexity 1 31 0 614 195 0 49 chr12 459738 459861 -143326594 - FLAM_A SINE Alu -13 120 4 2117 102 3 0 chr12 459914 460232 -143326223 - AluSp SINE Alu 0 319 1 952 194 0 0 chr12 460235 460395 -143326060 - FRAM SINE Alu -16 160 1 1990 97 48 3 chr12 460736 461025 -143325430 + AluSx SINE Alu 1 302 -10 1703 159 3 38 chr12 461149 461469 -143324986 - AluSq SINE Alu -4 309 1 1612 137 47 18 chr12 462698 462976 -143323479 + AluJo SINE Alu 1 286 -26 239 67 0 0 chr12 463526 463556 -143322899 + Alu SINE Alu 1 30 -273 * 405 92 105 53 chr12 463530 463606 -143322849 + AluJ/FRAM SINE Alu 218 297 -5 224 285 58 90 chr12 464157 464284 -143322171 + L2 LINE L2 1792 1922 -1392 2089 124 3 0 chr12 464284 464591 -143321864 - AluSx SINE Alu -4 308 1 224 285 58 90 chr12 464591 464775 -143321680 + L2 LINE L2 1922 2093 -1221 196 295 137 0 chr12 464798 464893 -143321562 + L2 LINE L2 2301 2408 -906 1805 163 0 3 chr12 465697 465979 -143320476 - AluJo SINE Alu -31 281 1 2195 45 10 35 chr12 466049 466337 -143320118 - AluY SINE Alu -4 307 27 895 98 16 0 chr12 466340 466463 -143319992 - AluSq/x SINE Alu -187 125 1 1422 169 32 52 chr12 467497 467805 -143318650 + AluJo SINE Alu 1 302 -10 189 0 0 0 chr12 468684 468705 -143317750 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 2012 113 0 36 chr12 468726 469035 -143317420 + AluSg SINE Alu 1 298 -12 669 311 94 26 chr12 469036 469177 -143317278 - L2 LINE L2 -13 3300 3170 2233 95 0 0 chr12 469177 469471 -143316984 + AluSx SINE Alu 1 294 -18 1767 112 4 7 chr12 469471 469739 -143316716 + AluSg SINE Alu 33 300 -10 669 311 94 26 chr12 469739 470185 -143316270 - L2 LINE L2 -142 3171 2681 23 54 0 0 chr12 472536 472573 -143313882 + AT_rich Low_complexity Low_complexity 1 37 0 1974 100 25 0 chr12 472716 472877 -143313578 - AluSq SINE Alu -25 288 116 216 0 0 0 chr12 472877 472901 -143313554 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1974 100 25 0 chr12 472901 473020 -143313435 - AluSq SINE Alu -197 116 1 2203 102 0 0 chr12 473330 473624 -143312831 + AluSc SINE Alu 1 294 -15 236 289 96 0 chr12 473804 473887 -143312568 - MIR3 SINE MIR -3 205 115 267 305 238 7 chr12 474029 474180 -143312275 + MIR SINE MIR 2 187 -75 3940 168 58 3 chr12 474192 474936 -143311519 + L1MB7 LINE L1 5254 6038 -146 455 117 43 32 chr12 474942 475019 -143311436 + L1MB7 LINE L1 6090 6170 -14 1866 143 7 3 chr12 475019 475313 -143311142 - AluJb SINE Alu -17 295 1 455 117 43 32 chr12 475313 475329 -143311126 + L1MB7 LINE L1 6170 6184 0 1350 199 39 52 chr12 475513 475819 -143310636 - AluJo SINE Alu 0 302 1 2278 62 3 36 chr12 475829 476136 -143310319 - AluY SINE Alu -14 297 1 1477 131 84 29 chr12 476615 476889 -143309566 + AluJb SINE Alu 1 289 -23 21 36 0 0 chr12 476928 476956 -143309499 + AT_rich Low_complexity Low_complexity 1 28 0 1395 176 16 0 chr12 477492 477737 -143308718 + AluJo SINE Alu 49 297 -15 314 299 174 52 chr12 477832 477980 -143308475 - L2 LINE L2 -1037 2277 2148 2417 49 3 3 chr12 477980 478284 -143308171 - AluY SINE Alu -7 304 1 314 299 174 52 chr12 478284 478560 -143307895 - L2 LINE L2 -1166 2148 1801 201 237 43 32 chr12 478781 478874 -143307581 - L2 LINE L2 -1904 1410 1317 1840 148 3 3 chr12 479646 479943 -143306512 + AluJo SINE Alu 6 302 -10 390 176 22 22 chr12 480114 480205 -143306250 - L1MD1 LINE L1 -13 6229 6139 762 209 0 0 chr12 480859 480993 -143305462 - AluJo SINE Alu -178 134 1 666 215 15 0 chr12 481777 481907 -143304548 - AluJb SINE Alu -25 287 156 1066 146 158 62 chr12 481954 482093 -143304362 + AluJo SINE Alu 5 129 -183 2088 117 23 0 chr12 482093 482393 -143304062 + AluSx SINE Alu 1 307 -5 1066 146 158 62 chr12 482393 482493 -143303962 + AluJo SINE Alu 129 267 -45 706 97 167 0 chr12 482744 482858 -143303597 - AluJo SINE Alu -178 134 2 2275 48 44 0 chr12 484041 484336 -143302119 - AluY SINE Alu -2 309 2 411 313 55 46 chr12 486054 486271 -143300184 + MIR SINE MIR 20 238 -24 328 278 0 72 chr12 486337 486434 -143300021 + L1MC4 LINE L1 6613 6702 -1340 893 147 102 6 chr12 488542 488699 -143297756 - FRAM SINE Alu -5 171 1 189 268 110 24 chr12 488987 489069 -143297386 + MIR SINE MIR 76 164 -98 982 163 0 0 chr12 489093 489259 -143297196 - AluJb SINE Alu -17 295 130 255 31 0 0 chr12 489844 489876 -143296579 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 203 128 51 0 chr12 489921 489960 -143296495 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 47 92 0 0 chr12 490216 490347 -143296108 + GC_rich Low_complexity Low_complexity 1 131 0 21 36 0 0 chr12 490510 490538 -143295917 + GC_rich Low_complexity Low_complexity 1 28 0 213 207 32 36 chr12 491250 491312 -143295143 + MIR SINE MIR 90 150 -58 261 248 191 0 chr12 491781 491886 -143294569 + MIR3 SINE MIR 62 186 -22 251 305 23 62 chr12 491916 492093 -143294362 - L3 LINE CR1 -127 1450 1281 348 331 102 80 chr12 493387 493810 -143292645 - L2 LINE L2 -3 3269 2838 2010 102 10 14 chr12 494287 494582 -143291873 + AluSx SINE Alu 1 294 -18 187 154 39 96 chr12 495232 495284 -143291171 + L2 LINE L2 3262 3310 -3 22 35 0 0 chr12 496688 496717 -143289738 + AT_rich Low_complexity Low_complexity 1 29 0 388 202 0 36 chr12 496834 496918 -143289537 - L1ME3A LINE L1 -61 6109 6029 266 208 0 14 chr12 496950 497022 -143289433 - L1ME3A LINE L1 -200 5964 5894 21 0 0 0 chr12 497031 497052 -143289403 + AT_rich Low_complexity Low_complexity 1 21 0 542 161 11 0 chr12 497059 497146 -143289309 - FRAM SINE Alu -24 152 65 2005 131 7 0 chr12 497216 497521 -143288934 + AluSx SINE Alu 1 307 -5 337 347 127 14 chr12 499089 499302 -143287153 + MIR SINE MIR 20 256 -6 23 0 0 0 chr12 499741 499764 -143286691 + AT_rich Low_complexity Low_complexity 1 23 0 929 126 0 0 chr12 499764 499891 -143286564 - FLAM_C SINE Alu -6 127 1 1946 97 37 0 chr12 500675 500966 -143285489 - AluSx SINE Alu 0 303 3 1863 126 7 0 chr12 501046 501364 -143285091 + AluSg SINE Alu 1 320 0 2052 122 0 0 chr12 501364 501650 -143284805 + AluSx SINE Alu 1 286 -26 220 0 86 0 chr12 501654 501689 -143284766 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 28 48 0 0 chr12 501706 501748 -143284707 + AT_rich Low_complexity Low_complexity 1 42 0 383 271 45 8 chr12 501782 501915 -143284540 - L1MEd LINE L1 -5932 187 50 1327 206 3 47 chr12 502225 502386 -143284069 - AluJo SINE Alu -17 295 151 2195 59 38 0 chr12 502386 502676 -143283779 - AluY SINE Alu -10 301 1 1327 206 3 47 chr12 502676 502815 -143283640 - AluJo SINE Alu -161 151 8 1569 174 43 0 chr12 502916 503197 -143283258 - AluJo SINE Alu -9 303 11 541 245 55 70 chr12 503631 503831 -143282624 - L2 LINE L2 -3 3310 3114 1913 151 3 19 chr12 504477 504617 -143281838 + AluJo SINE Alu 1 142 -170 1744 141 41 0 chr12 504617 504907 -143281548 + AluJb SINE Alu 1 302 -10 1913 151 3 19 chr12 504907 505083 -143281372 + AluJo SINE Alu 142 312 0 921 229 62 33 chr12 505994 506238 -143280217 + MIR SINE MIR 6 256 -6 1478 152 0 84 chr12 506241 506563 -143279892 + AluJo SINE Alu 1 295 -17 500 281 20 7 chr12 506826 506979 -143279476 - MER117 DNA MER1_type -35 162 8 198 328 0 16 chr12 506979 507040 -143279415 - MIR SINE MIR -56 152 93 1860 174 0 10 chr12 507908 508212 -143278243 + AluJo SINE Alu 5 305 -7 716 187 8 22 chr12 509148 509282 -143277173 - FLAM_A SINE Alu 0 133 2 243 296 0 61 chr12 509506 509621 -143276834 - L2 LINE L2 -1313 2001 1894 2565 43 0 7 chr12 509852 510154 -143276301 - AluY SINE Alu -11 300 1 398 287 34 40 chr12 510220 510404 -143276051 + MIR3 SINE MIR 8 191 -17 481 217 104 0 chr12 512289 512404 -143274051 - MIR3 SINE MIR -9 199 73 927 218 0 0 chr12 512654 512824 -143273631 + FAM SINE Alu 1 170 -5 1791 193 0 7 chr12 512837 513137 -143273318 - AluJb SINE Alu -2 310 13 1887 157 0 4 chr12 513354 513635 -143272820 + AluJb SINE Alu 1 280 -32 340 318 121 8 chr12 513652 513784 -143272671 - MIR SINE MIR -40 222 76 376 198 128 116 chr12 514367 514539 -143271916 + MER5B DNA MER1_type 1 174 -4 22 0 0 0 chr12 514732 514754 -143271701 + AT_rich Low_complexity Low_complexity 1 22 0 281 210 32 16 chr12 515531 515593 -143270862 - MER5B DNA MER1_type 0 178 116 230 317 12 0 chr12 515594 515676 -143270779 + L1ME2 LINE L1 6072 6154 -10 6645 169 67 7 chr12 515702 516142 -143270313 + L1MCa LINE L1 30 442 -5984 2292 115 3 0 chr12 516142 516446 -143270009 - AluSg SINE Alu -5 305 1 6645 169 67 7 chr12 516446 517371 -143269084 + L1MCa LINE L1 442 1477 -4949 2388 119 0 0 chr12 517371 517681 -143268774 + AluSx SINE Alu 2 311 -1 1226 164 37 23 chr12 517692 517906 -143268549 + AluJb SINE Alu 82 298 -14 322 111 99 49 chr12 517909 517990 -143268465 + L1MCa LINE L1 1471 1555 -4871 232 162 0 0 chr12 518006 518043 -143268412 + Alu SINE Alu 11 47 -255 2436 111 95 16 chr12 518043 518544 -143267911 + L1MCa LINE L1 1560 2179 -4247 1097 184 17 63 chr12 518548 518787 -143267668 + AluJo SINE Alu 85 312 0 9985 210 49 18 chr12 518803 518905 -143267550 + L1MCa LINE L1 2197 2294 -4319 2821 58 29 16 chr12 518905 519281 -143267174 + L1PA8 LINE L1 5791 6171 -1 9985 210 49 18 chr12 519281 520394 -143266061 + L1MCa LINE L1 2294 3371 -3242 1844 149 35 3 chr12 520394 520682 -143265773 + AluJb SINE Alu 1 297 -15 9985 210 49 18 chr12 520682 521271 -143265184 + L1MCa LINE L1 3371 3940 -2673 2070 152 10 0 chr12 521271 521568 -143264887 - AluJb SINE Alu -12 300 1 9985 210 49 18 chr12 521568 521713 -143264742 + L1MCa LINE L1 3940 4079 -2534 2224 113 7 13 chr12 521713 522022 -143264433 + AluSg SINE Alu 1 307 -3 9985 210 49 18 chr12 522022 523480 -143262975 + L1MCa LINE L1 4079 5894 -719 2248 103 0 57 chr12 523929 524260 -143262195 + AluJb SINE Alu 1 312 0 574 290 122 9 chr12 524975 525196 -143261259 - MIR SINE MIR -3 259 14 431 292 260 0 chr12 525504 525658 -143260797 + MER91A DNA MER1_type 3 196 0 2439 139 107 61 chr12 526218 526267 -143260188 - L1MB5 LINE L1 -6 6168 6123 2226 109 3 0 chr12 526267 526560 -143259895 + AluSx SINE Alu 9 302 -10 2439 139 107 61 chr12 526560 526820 -143259635 - L1MB5 LINE L1 -51 6123 5877 1261 165 169 0 chr12 526820 527075 -143259380 - AluJo SINE Alu -3 299 2 2387 62 36 7 chr12 527080 527384 -143259071 - AluSp SINE Alu 0 313 1 2439 139 107 61 chr12 527384 527626 -143258829 - L1MB5 LINE L1 -300 5874 5584 300 234 13 65 chr12 529623 529700 -143256755 + L2 LINE L2 3241 3313 0 404 243 88 7 chr12 529721 529869 -143256586 - Charlie8 DNA MER1_type -2213 204 45 980 141 18 41 chr12 530076 530246 -143256209 - FRAM SINE Alu 0 166 1 2149 109 0 23 chr12 530807 531110 -143255345 - AluSx SINE Alu -10 302 7 1291 126 0 0 chr12 531372 531546 -143254909 + FRAM SINE Alu 1 170 -6 238 285 115 55 chr12 531609 531774 -143254681 + MER5B DNA MER1_type 1 175 -3 * 402 236 61 88 chr12 531630 531778 -143254677 - MER5A DNA MER1_type -32 157 14 1892 153 7 19 chr12 532689 532996 -143253459 - AluJo SINE Alu -5 307 5 212 296 0 0 chr12 533396 533450 -143253005 + MIR SINE MIR 91 144 -64 204 186 103 72 chr12 533667 533764 -143252691 + L2 LINE L2 1902 2001 -1313 2258 117 0 0 chr12 533774 534072 -143252383 + AluSx SINE Alu 1 298 -14 859 126 16 0 chr12 534116 534243 -143252212 + AluJb SINE Alu 177 305 -7 1022 173 6 0 chr12 534410 534572 -143251883 - AluSg/x SINE Alu -21 289 127 560 167 20 10 chr12 534572 534674 -143251781 + AluJo/FRAM SINE Alu 203 305 -7 2284 88 7 10 chr12 534836 535133 -143251322 - AluSq SINE Alu -17 296 1 441 272 190 6 chr12 536159 536317 -143250138 - MIR3 SINE MIR -2 206 20 2674 52 0 0 chr12 536568 536877 -143249578 - AluY SINE Alu -2 309 1 894 211 52 9 chr12 536884 537116 -143249339 - L1MC3 LINE L1 0 7785 7544 1351 183 0 45 chr12 538218 538464 -143247991 - AluJo SINE Alu -18 294 60 875 169 33 0 chr12 540773 540956 -143245499 - L1MB7 LINE L1 -60 6124 5936 1119 136 60 0 chr12 540966 541150 -143245305 - AluJ SINE Alu 0 312 118 211 256 45 34 chr12 541315 541491 -143244964 + CT-rich Low_complexity Low_complexity 1 178 0 204 227 64 29 chr12 541641 541813 -143244642 + CT-rich Low_complexity Low_complexity 1 178 0 239 249 40 40 chr12 542217 542394 -143244061 + CT-rich Low_complexity Low_complexity 1 177 0 3028 132 17 33 chr12 542749 543271 -143243184 - MER41A LTR ERV1 -40 514 1 729 148 16 16 chr12 543294 543416 -143243039 - AluJ SINE Alu -188 124 3 1527 158 129 21 chr12 543416 543722 -143242733 - L1MB7 LINE L1 -341 5824 5486 2696 43 0 0 chr12 543722 544026 -143242429 - AluY SINE Alu -7 304 1 1527 158 129 21 chr12 544026 544070 -143242385 - L1MB7 LINE L1 -679 5486 5448 969 211 59 62 chr12 544248 544276 -143242179 + MIR SINE MIR 8 35 -227 2201 111 37 0 chr12 544276 544574 -143241881 + AluSx SINE Alu 1 309 -3 969 211 59 62 chr12 544574 544704 -143241751 + MIR SINE MIR 35 167 -95 2101 80 10 47 chr12 544704 545026 -143241429 - AluSc SINE Alu 0 309 1 969 211 59 62 chr12 545026 545122 -143241333 + MIR SINE MIR 167 262 0 288 282 59 0 chr12 545166 545251 -143241204 - MIR SINE MIR -70 192 103 1113 239 104 51 chr12 545339 545385 -143241070 - L2 LINE L2 -54 3259 3217 2489 59 0 29 chr12 545385 545692 -143240763 + AluY SINE Alu 1 298 -13 1113 239 104 51 chr12 545692 546059 -143240396 - L2 LINE L2 -96 3217 2824 452 273 18 0 chr12 546079 546189 -143240266 + MER94 DNA DNA 3 114 -20 1579 252 159 42 chr12 546193 546867 -143239588 - L2 LINE L2 -513 2801 2049 501 281 96 11 chr12 547446 547624 -143238831 + MIR SINE MIR 12 204 -58 357 302 40 13 chr12 547662 547794 -143238661 - MIR SINE MIR -74 134 7 1084 167 81 102 chr12 547818 547952 -143238503 + MER2 DNA MER2_type 1 136 -209 1579 152 54 11 chr12 547952 548229 -143238226 - AluJo SINE Alu -23 289 1 1084 167 81 102 chr12 548229 548429 -143238026 + MER2 DNA MER2_type 136 328 -17 879 58 0 0 chr12 550219 550323 -143236132 + AluSg/x SINE Alu 180 283 -27 267 293 49 0 chr12 551261 551343 -143235112 - MER5C DNA MER1_type -201 123 38 2672 149 33 33 chr12 551700 552182 -143234273 + L1MB3 LINE L1 5650 6134 -49 1850 128 13 39 chr12 552182 552494 -143233961 + AluJb SINE Alu 1 304 -8 2672 149 33 33 chr12 552494 552533 -143233922 + L1MB3 LINE L1 6133 6171 -12 315 298 26 67 chr12 553083 553239 -143233216 + MIR SINE MIR 2 150 -65 2228 107 3 3 chr12 553310 553609 -143232846 + AluSg SINE Alu 1 299 -11 228 111 0 0 chr12 554169 554205 -143232250 + (A)n Simple_repeat Simple_repeat 1 36 0 600 254 57 43 chr12 554206 554415 -143232040 + MIR SINE MIR 50 261 -1 2317 91 0 0 chr12 554616 554938 -143231517 - AluSx SINE Alu 0 322 1 222 227 15 76 chr12 555714 555780 -143230675 + L2 LINE L2 3201 3262 -10 207 0 0 0 chr12 556198 556221 -143230234 + (TTTG)n Simple_repeat Simple_repeat 4 26 0 186 43 0 0 chr12 556222 556245 -143230210 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1524 179 100 0 chr12 556450 556610 -143229845 - AluJb SINE Alu -4 308 165 219 36 0 0 chr12 556610 556638 -143229817 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1524 179 100 0 chr12 556638 556757 -143229698 - AluJb SINE Alu -147 165 1 327 257 50 8 chr12 557606 557724 -143228731 + MIR SINE MIR 2 128 -134 22 0 0 0 chr12 557733 557755 -143228700 + AT_rich Low_complexity Low_complexity 1 22 0 1067 150 6 39 chr12 557739 557919 -143228536 - FAM SINE Alu -1 174 1 243 305 0 0 chr12 559169 559228 -143227227 + MIR SINE MIR 203 261 -1 411 299 71 0 chr12 560145 560272 -143226183 + MIR SINE MIR 81 216 -46 217 321 0 0 chr12 560712 560765 -143225690 + L2 LINE L2 3207 3259 -13 1577 187 47 17 chr12 560896 561195 -143225260 + AluJo SINE Alu 1 308 -4 414 288 153 6 chr12 561306 561469 -143224986 - MIR SINE MIR -10 252 66 751 145 0 83 chr12 561490 561635 -143224820 - FLAM_C SINE Alu 0 133 1 1762 211 106 12 chr12 561901 562327 -143224128 - MER31B LTR ERV1 0 466 1 223 269 137 58 chr12 563100 563290 -143223165 + MIR SINE MIR 14 214 -37 451 326 62 26 chr12 563624 563817 -143222638 + MIR3 SINE MIR 2 201 -7 28 0 0 0 chr12 566004 566032 -143220423 + AT_rich Low_complexity Low_complexity 1 28 0 791 197 0 0 chr12 566043 566175 -143220280 - FLAM_A SINE Alu 0 133 2 327 333 180 0 chr12 566245 566395 -143220060 - MIR SINE MIR -3 259 83 433 229 93 7 chr12 566483 566623 -143219832 - MER103 DNA DNA -3 163 12 1402 181 120 18 chr12 566810 567086 -143219369 - AluJo SINE Alu -8 304 1 191 345 0 8 chr12 567090 567183 -143219272 - MIR SINE MIR -63 145 57 21 0 0 0 chr12 567696 567717 -143218738 + AT_rich Low_complexity Low_complexity 1 21 0 1893 151 0 13 chr12 567804 568115 -143218340 + AluJb SINE Alu 1 307 -5 237 278 56 95 chr12 568225 568351 -143218104 - MIR3 SINE MIR -39 169 49 186 213 307 0 chr12 568478 568553 -143217902 - MIR SINE MIR -102 160 63 379 68 0 123 chr12 569087 569160 -143217295 - L1MB8 LINE L1 -6 6172 6109 1607 188 7 0 chr12 569160 569436 -143217019 + AluJo SINE Alu 1 278 -34 189 0 0 0 chr12 569442 569463 -143216992 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 518 331 69 23 chr12 569934 570261 -143216194 - L2 LINE L2 -181 3091 2727 2504 65 0 0 chr12 570261 570571 -143215884 - AluY SINE Alu 0 311 2 518 331 69 23 chr12 570571 570706 -143215749 - L2 LINE L2 -545 2727 2600 417 269 19 0 chr12 570777 570885 -143215570 + MIR3 SINE MIR 77 186 -22 213 108 0 0 chr12 571361 571398 -143215057 + (CACCC)n Simple_repeat Simple_repeat 3 39 0 619 209 9 0 chr12 573985 574100 -143212355 + MER91A DNA MER1_type 1 116 -80 255 245 21 21 chr12 574961 575055 -143211400 + G-rich Low_complexity Low_complexity 1 94 0 322 144 0 89 chr12 575056 575236 -143211219 + (GGAGA)n Simple_repeat Simple_repeat 4 167 0 185 155 0 99 chr12 575239 575381 -143211074 + GA-rich Low_complexity Low_complexity 4 131 0 420 301 11 19 chr12 575415 575633 -143210822 + G-rich Low_complexity Low_complexity 1 216 0 245 331 18 31 chr12 575792 575955 -143210500 + CT-rich Low_complexity Low_complexity 1 161 0 545 233 41 7 chr12 576175 576321 -143210134 - MIR3 SINE MIR -38 170 20 1227 219 35 13 chr12 576502 576812 -143209643 + L1MA4A LINE L1 5985 6301 -2 297 306 306 0 chr12 576895 577065 -143209390 + MIR SINE MIR 9 230 -32 * 338 298 173 42 chr12 577029 577220 -143209235 - MIR SINE MIR -12 250 35 1875 129 43 20 chr12 577947 578250 -143208205 + AluJo SINE Alu 1 310 -2 195 200 25 0 chr12 578261 578301 -143208154 - MIR3 SINE MIR -52 156 116 713 328 9 4 chr12 578546 578775 -143207680 + MIR SINE MIR 23 252 -10 307 351 26 9 chr12 578777 578891 -143207564 + MER91B DNA MER1_type 75 190 0 1005 191 0 0 chr12 579660 579838 -143206617 + AluJb SINE Alu 135 312 0 396 0 0 0 chr12 581612 581656 -143204799 + (CA)n Simple_repeat Simple_repeat 2 45 0 613 195 88 13 chr12 582266 582425 -143204030 - MIR SINE MIR -66 196 26 231 167 0 0 chr12 583051 583093 -143203362 + GA-rich Low_complexity Low_complexity 1 42 0 2932 182 30 79 chr12 583748 583828 -143202627 - L1MB7 LINE L1 -16 6168 6086 2737 23 0 0 chr12 583828 584137 -143202318 + AluY SINE Alu 1 309 -2 2932 182 30 79 chr12 584137 584215 -143202240 - L1MB7 LINE L1 -98 6086 6006 2216 128 0 0 chr12 584215 584527 -143201928 + AluSx SINE Alu 1 312 0 2932 182 30 79 chr12 584527 585092 -143201363 - L1MB7 LINE L1 -178 6006 5492 2397 84 3 0 chr12 585092 585401 -143201054 - AluY SINE Alu 0 311 2 2932 182 30 79 chr12 585401 585559 -143200896 - L1MB7 LINE L1 -692 5492 5328 489 329 0 13 chr12 585622 585780 -143200675 - MIR3 SINE MIR -14 194 39 315 315 113 13 chr12 586232 586413 -143200042 - MIR SINE MIR -41 221 19 344 280 192 0 chr12 588211 588336 -143198119 - L2 LINE L2 -1 3271 3123 189 289 78 56 chr12 588885 588975 -143197480 + MIR SINE MIR 96 187 -75 426 269 47 23 chr12 589679 589839 -143196616 - MIR SINE MIR -56 206 41 272 290 187 0 chr12 590427 590534 -143195921 - MIR SINE MIR -108 154 28 182 370 40 0 chr12 592943 593043 -143193412 - L2 LINE L2 -30 3242 3139 359 234 0 26 chr12 594119 594196 -143192259 - MER5A DNA MER1_type -99 90 16 242 285 153 7 chr12 595558 595695 -143190760 + MIR3 SINE MIR 34 190 -18 296 311 10 19 chr12 595912 596015 -143190440 - MER91A DNA MER1_type -29 167 66 339 157 0 0 chr12 596794 596864 -143189591 + (TGGA)n Simple_repeat Simple_repeat 4 73 0 190 103 0 0 chr12 596914 596943 -143189512 + MIR SINE MIR 96 124 -84 2030 134 3 10 chr12 597043 597348 -143189107 + AluSx SINE Alu 1 303 -9 399 251 36 36 chr12 597358 597553 -143188902 - Charlie7 DNA MER1_type 0 2612 2418 23 0 0 0 chr12 598196 598219 -143188236 + GC_rich Low_complexity Low_complexity 1 23 0 185 341 73 49 chr12 599582 599705 -143186750 + L3b LINE CR1 1439 1564 -19 594 301 30 0 chr12 601961 602127 -143184328 - MIR SINE MIR -12 250 80 1318 92 0 0 chr12 602170 602343 -143184112 - AluSq SINE Alu -7 306 134 2304 82 0 3 chr12 602343 602646 -143183809 - AluSx SINE Alu -10 302 1 1024 171 0 17 chr12 602747 602928 -143183527 + AluSg/x SINE Alu 135 312 0 1978 94 45 3 chr12 603271 603559 -143182896 + AluSq SINE Alu 1 300 -13 562 103 26 0 chr12 603571 603672 -143182783 + AluSg/x SINE Alu 209 311 0 2013 212 23 13 chr12 603699 604091 -143182364 + MSTD LTR MaLR 1 396 0 828 214 12 0 chr12 605803 605976 -143180479 - AluJo SINE Alu -1 311 137 1668 150 17 0 chr12 606425 606725 -143179730 + MER47A DNA MER2_type 58 362 -4 234 62 0 0 chr12 606736 606768 -143179687 + (TA)n Simple_repeat Simple_repeat 2 33 0 634 99 0 0 chr12 606770 606851 -143179604 - AluSg/x SINE Alu -69 243 163 319 281 174 0 chr12 606852 606971 -143179484 - MIR SINE MIR -114 148 9 356 224 0 0 chr12 606971 607038 -143179417 + MER5A DNA MER1_type 1 67 -122 862 141 7 7 chr12 607041 607176 -143179279 - AluJo SINE Alu -177 135 1 22 0 0 0 chr12 607188 607210 -143179245 + AT_rich Low_complexity Low_complexity 1 22 0 1537 191 113 33 chr12 607252 607677 -143178778 + LTR2B LTR ERV1 32 490 0 1543 162 19 15 chr12 607678 607937 -143178518 - AluJo SINE Alu -52 260 1 263 303 53 0 chr12 607938 608014 -143178441 - MIR SINE MIR -171 91 12 915 210 119 113 chr12 608725 608802 -143177653 + MER4C LTR ERV1 1 76 -389 352 0 20 20 chr12 608802 608851 -143177604 + (CAAAA)n Simple_repeat Simple_repeat 5 53 0 915 210 119 113 chr12 608851 609235 -143177220 + MER4C LTR ERV1 76 465 0 189 74 0 0 chr12 609588 609615 -143176840 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2164 118 3 0 chr12 609631 609919 -143176536 + AluSx SINE Alu 7 295 -17 768 178 0 0 chr12 610118 610298 -143176157 + (TG)n Simple_repeat Simple_repeat 1 180 0 738 167 0 0 chr12 610351 610531 -143175924 + (TG)n Simple_repeat Simple_repeat 1 180 0 304 220 89 48 chr12 611337 611490 -143174965 - MIR SINE MIR -59 149 1 207 271 136 0 chr12 611509 611568 -143174887 + L2 LINE L2 3206 3272 0 385 296 0 0 chr12 611570 611746 -143174709 + (CATG)n Simple_repeat Simple_repeat 2 177 0 358 299 0 0 chr12 611809 611986 -143174469 + (CATG)n Simple_repeat Simple_repeat 4 180 0 * 401 301 0 0 chr12 611948 612177 -143174278 + (TGAA)n Simple_repeat Simple_repeat 1 229 0 303 322 0 0 chr12 612220 612397 -143174058 + (TGAA)n Simple_repeat Simple_repeat 2 178 0 * 391 299 0 0 chr12 612280 612457 -143173998 + (CATG)n Simple_repeat Simple_repeat 4 180 0 251 233 192 17 chr12 612963 613083 -143173372 + MIR SINE MIR 18 158 -104 234 270 95 7 chr12 613115 613252 -143173203 + L1ME4a LINE L1 5946 6094 -27 1085 181 42 23 chr12 613457 613673 -143172782 + AluJo SINE Alu 1 220 -92 328 100 0 0 chr12 613673 613723 -143172732 + AluSq/x SINE Alu 86 135 -168 2175 122 3 0 chr12 613723 614026 -143172429 + AluSx SINE Alu 1 304 -8 2023 93 41 7 chr12 614052 614342 -143172113 + AluSg SINE Alu 5 304 -6 250 53 0 126 chr12 614674 614769 -143171686 + (GGGAA)n Simple_repeat Simple_repeat 2 84 0 184 214 0 24 chr12 614899 614941 -143171514 - L2 LINE L2 -1 3312 3272 275 146 21 0 chr12 615239 615287 -143171168 - MER45 DNA AcHobo -14 1567 1519 375 219 0 0 chr12 615331 615413 -143171042 - MER45 DNA AcHobo -918 122 41 324 289 79 9 chr12 615836 615950 -143170505 - MIR3 SINE MIR -53 155 34 183 275 242 17 chr12 617012 617132 -143169323 + L2 LINE L2 3036 3182 -90 209 117 96 0 chr12 617353 617447 -143169008 + GA-rich Low_complexity Low_complexity 2 104 0 555 295 161 9 chr12 617621 617838 -143168617 - MIR SINE MIR 0 262 13 463 266 47 107 chr12 618035 618399 -143168056 + L1MC4a LINE L1 5463 5804 -317 305 249 102 51 chr12 618446 618643 -143167812 + L1MC4a LINE L1 5789 5995 -1813 336 127 18 0 chr12 618734 618789 -143167666 - U7 snRNA snRNA -7 56 1 264 305 78 31 chr12 618899 619027 -143167428 - L2 LINE L2 -1 3271 3138 582 131 9 47 chr12 619303 619410 -143167045 - AluJo SINE Alu -178 134 32 506 300 105 5 chr12 621274 621464 -143164991 + MIR SINE MIR 16 224 -38 2255 97 3 10 chr12 621618 621916 -143164539 + AluSq SINE Alu 1 296 -17 343 321 93 50 chr12 621996 622339 -143164116 + L1MC1 LINE L1 3014 3371 -2775 1813 126 16 0 chr12 622663 622918 -143163537 + AluJb SINE Alu 29 287 -25 435 155 0 0 chr12 622918 623002 -143163453 + GA-rich Low_complexity Low_complexity 1 84 0 204 40 0 0 chr12 623020 623045 -143163410 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4645 190 26 68 chr12 623124 623556 -143162899 + L1MC1 LINE L1 3973 4422 -1911 304 50 0 100 chr12 623556 623616 -143162839 + L1MA4A LINE L1 6244 6297 -6 4645 190 26 68 chr12 623616 623705 -143162750 + L1MC1 LINE L1 4422 4513 -1820 741 176 0 63 chr12 623705 623847 -143162608 + FLAM_C SINE Alu 1 133 0 4645 190 26 68 chr12 623847 624692 -143161763 + L1MC1 LINE L1 4513 5236 -1097 2035 98 79 0 chr12 624692 624969 -143161486 + AluSp SINE Alu 1 299 -14 4645 190 26 68 chr12 624969 625461 -143160994 + L1MC1 LINE L1 5236 5747 -586 1504 189 17 26 chr12 625461 625759 -143160696 + L1MC1 LINE L1 6035 6333 0 1999 142 7 7 chr12 625840 626142 -143160313 + AluJb SINE Alu 1 302 -10 732 265 33 0 chr12 626406 626587 -143159868 + MIR SINE MIR 76 262 0 365 205 71 54 chr12 627812 627908 -143158547 + L1ME4a LINE L1 5986 6086 -35 2067 131 3 0 chr12 627908 628198 -143158257 - AluJb SINE Alu -21 291 1 365 205 71 54 chr12 628198 628213 -143158242 + L1ME4a LINE L1 6086 6099 -22 1982 107 43 7 chr12 628298 628578 -143157877 + AluSq SINE Alu 1 290 -23 312 292 111 21 chr12 628742 628886 -143157569 - MIR SINE MIR -76 186 30 2053 115 10 13 chr12 629470 629775 -143156680 + AluSx SINE Alu 1 304 -8 414 0 0 0 chr12 629852 629898 -143156557 + (TG)n Simple_repeat Simple_repeat 2 47 0 829 181 18 41 chr12 629898 630058 -143156397 - AluJb SINE Alu -29 283 126 32 43 0 0 chr12 630415 630461 -143155994 + AT_rich Low_complexity Low_complexity 1 46 0 2467 61 3 10 chr12 630463 630774 -143155681 + AluY SINE Alu 1 309 -2 2127 112 0 44 chr12 630779 631100 -143155355 + AluSx SINE Alu 1 307 -5 4023 171 105 20 chr12 631350 632027 -143154428 - L1MB8 LINE L1 -15 6163 5545 1787 179 3 16 chr12 632027 632334 -143154121 - AluJo SINE Alu -9 303 1 4023 171 105 20 chr12 632334 632856 -143153599 - L1MB8 LINE L1 -633 5545 5069 2249 133 0 0 chr12 632856 633158 -143153297 - AluSx SINE Alu -10 302 1 4023 171 105 20 chr12 633158 633439 -143153016 - L1MB8 LINE L1 -1109 5069 4542 2459 75 0 0 chr12 633553 633860 -143152595 + AluSx SINE Alu 1 307 -5 292 287 49 25 chr12 633973 634095 -143152360 + HAL1 LINE L1 338 462 -2045 403 276 60 0 chr12 634095 634211 -143152244 + MER5C DNA MER1_type 1 123 -201 182 231 0 0 chr12 634372 634411 -143152044 + MER5C DNA MER1_type 286 324 0 234 306 47 0 chr12 634467 634552 -143151903 + HAL1 LINE L1 549 637 -1870 978 120 56 0 chr12 634624 634766 -143151689 + FRAM SINE Alu 14 163 -13 226 298 0 50 chr12 634781 634902 -143151553 + HAL1 LINE L1 684 798 -1709 349 222 228 26 chr12 635032 635221 -143151234 + HAL1 LINE L1 795 1021 -1486 32 26 0 0 chr12 635227 635266 -143151189 + AT_rich Low_complexity Low_complexity 1 39 0 687 121 0 0 chr12 635269 635368 -143151087 - AluJ/FLAM SINE Alu -212 100 2 1089 271 155 25 chr12 635382 636009 -143150446 + HAL1 LINE L1 1032 1739 -768 237 239 15 0 chr12 636243 636310 -143150145 + MLT1K LTR MaLR 511 578 -10 213 194 311 19 chr12 636324 636427 -143150028 - MER5A DNA MER1_type -13 176 44 * 422 258 200 0 chr12 636339 636459 -143149996 + MER5A DNA MER1_type 46 189 0 267 31 0 0 chr12 636549 636581 -143149874 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1068 228 57 24 chr12 637559 637805 -143148650 - MIR SINE MIR 0 262 9 341 233 105 12 chr12 638057 638143 -143148312 + MIR3 SINE MIR 74 167 -41 2608 58 0 7 chr12 638687 638997 -143147458 + AluY SINE Alu 3 310 -1 1041 99 0 21 chr12 639019 639161 -143147294 + AluJb SINE Alu 163 301 -11 183 284 119 64 chr12 639169 639278 -143147177 - MIR3 SINE MIR -93 115 1 2441 92 0 3 chr12 639924 640227 -143146228 - AluSq SINE Alu -6 307 6 2004 138 33 13 chr12 640359 640833 -143145622 - AluSx SINE Alu 0 312 1 206 269 0 19 chr12 640858 640910 -143145545 - MIR3 SINE MIR -23 185 135 1079 262 120 18 chr12 641053 641495 -143144960 + MLT1J LTR MaLR 18 504 -7 231 259 259 19 chr12 642168 642330 -143144125 - MIR3 SINE MIR -3 205 5 2146 132 0 3 chr12 642523 642819 -143143636 + AluSx SINE Alu 1 295 -17 2589 64 0 6 chr12 642821 643134 -143143321 + AluY SINE Alu 1 311 0 191 244 56 78 chr12 643228 643318 -143143137 - MIR SINE MIR -102 160 73 2261 92 3 3 chr12 644516 644800 -143141655 + AluSp SINE Alu 13 296 -17 2406 75 7 0 chr12 646121 646413 -143140042 + AluSx SINE Alu 1 294 -18 351 254 6 51 chr12 647410 647587 -143138868 + G-rich Low_complexity Low_complexity 2 170 0 331 327 19 9 chr12 647655 647762 -143138693 - MIR3 SINE MIR -6 202 95 594 235 95 34 chr12 648976 649155 -143137300 + MIR SINE MIR 3 192 -70 210 339 0 0 chr12 649475 649531 -143136924 + MIR3 SINE MIR 104 159 -49 2249 106 0 0 chr12 649815 650127 -143136328 - AluSx SINE Alu 0 312 1 1983 162 6 19 chr12 650365 650730 -143135725 + AluJo SINE Alu 3 363 0 2337 105 7 0 chr12 650738 651043 -143135412 + AluSc SINE Alu 3 309 0 2044 122 31 0 chr12 651049 651337 -143135118 + AluSg1 SINE Alu 1 297 -12 2409 67 40 3 chr12 651337 651636 -143134819 + AluY SINE Alu 1 310 -1 25 0 0 0 chr12 651978 652003 -143134452 + AT_rich Low_complexity Low_complexity 1 25 0 2167 140 0 6 chr12 652948 653262 -143133193 + AluJo SINE Alu 1 312 0 202 281 0 31 chr12 653647 653711 -143132744 - L2 LINE L2 -100 3213 3152 2312 98 3 3 chr12 653723 654020 -143132435 + AluSx SINE Alu 1 297 -15 2322 103 0 0 chr12 654023 654323 -143132132 + AluSx SINE Alu 1 300 -12 356 326 96 53 chr12 654375 654788 -143131667 - L2 LINE L2 -237 3035 2608 767 223 55 103 chr12 655817 656011 -143130444 + MIR SINE MIR 3 182 -80 1743 193 3 0 chr12 656011 656296 -143130159 + AluJo SINE Alu 6 291 -21 767 223 55 103 chr12 656296 656374 -143130081 + MIR SINE MIR 182 262 0 226 255 32 43 chr12 656659 656753 -143129702 - L2 LINE L2 -211 3061 2969 1023 133 60 0 chr12 657001 657152 -143129303 + AluSg/x SINE Alu 136 295 -15 4014 141 14 14 chr12 657744 658377 -143128078 + MER41B LTR ERV1 1 633 -2 654 194 32 67 chr12 658391 658581 -143127874 - MIR SINE MIR -62 146 8 1279 129 58 45 chr12 658705 658809 -143127646 - MER30 DNA MER1_type 0 230 129 2308 89 24 0 chr12 658809 659100 -143127355 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr12 659100 659126 -143127329 + (TA)n Simple_repeat Simple_repeat 2 27 0 1279 129 58 45 chr12 659126 659244 -143127211 - MER30 DNA MER1_type -100 130 4 2214 102 3 10 chr12 659538 659880 -143126575 - AluSx SINE Alu 0 312 1 2333 61 3 10 chr12 660547 660864 -143125591 - AluSc SINE Alu 0 309 1 208 263 23 128 chr12 661614 661747 -143124708 + L2 LINE L2 139 257 -3057 2078 122 7 7 chr12 662419 662714 -143123741 + AluSx SINE Alu 1 295 -17 2019 141 14 0 chr12 662737 663027 -143123428 + AluSx SINE Alu 1 294 -18 1968 112 42 3 chr12 663477 663762 -143122693 - AluSg SINE Alu -14 296 1 619 204 0 53 chr12 664114 664246 -143122209 - FLAM_C SINE Alu -16 127 3 2349 94 10 0 chr12 664257 664554 -143121901 - AluSq SINE Alu -13 300 1 2581 187 20 25 chr12 664583 664996 -143121459 + L1MB4 LINE L1 4789 5202 -978 2179 110 0 7 chr12 664996 665296 -143121159 + AluSx SINE Alu 1 298 -14 2372 106 3 0 chr12 665298 665644 -143120811 + AluSp SINE Alu 1 313 0 2581 187 20 25 chr12 665644 666272 -143120183 + L1MB4 LINE L1 5203 5830 -350 2369 96 0 0 chr12 666272 666563 -143119892 + AluSg SINE Alu 1 291 -19 2390 100 0 3 chr12 666563 666874 -143119581 + AluSg SINE Alu 1 310 0 2617 47 0 0 chr12 667618 667918 -143118537 - AluY SINE Alu -11 300 1 351 265 17 0 chr12 668111 668228 -143118227 + L1MC4a LINE L1 5753 5871 -1937 842 195 185 25 chr12 668475 668675 -143117780 - MIR SINE MIR -23 239 8 270 314 10 39 chr12 669455 669557 -143116898 - MIR3 SINE MIR -2 206 108 1437 156 117 12 chr12 669721 670001 -143116454 - AluSx SINE Alu 0 307 1 2438 49 0 16 chr12 670762 671066 -143115389 + AluY SINE Alu 1 299 -12 407 271 62 16 chr12 671239 671368 -143115087 + MIR SINE MIR 20 154 -108 2033 89 11 0 chr12 671461 671730 -143114725 - AluSq SINE Alu -40 273 2 266 192 29 70 chr12 672056 672228 -143114227 + (CCCG)n Simple_repeat Simple_repeat 4 168 0 250 181 157 72 chr12 672724 672807 -143113648 - MIR SINE MIR -70 192 103 180 278 150 38 chr12 673097 673230 -143113225 + L2 LINE L2 3121 3268 -45 284 236 0 0 chr12 673362 673417 -143113038 - MIR SINE MIR 0 262 208 453 194 218 8 chr12 673425 673549 -143112906 - MER5A DNA MER1_type 0 189 40 419 205 41 0 chr12 673557 673652 -143112803 - MIR SINE MIR -50 212 114 269 250 27 71 chr12 674133 674245 -143112210 - L2 LINE L2 -613 2701 2595 523 269 0 8 chr12 674416 674535 -143111920 + MIR SINE MIR 33 150 -112 282 243 96 64 chr12 674683 674856 -143111599 - MIR SINE MIR -62 146 19 726 185 147 13 chr12 676909 677066 -143109389 - MER5A DNA MER1_type -11 178 1 251 267 158 0 chr12 677090 677210 -143109245 + MIR SINE MIR 47 185 -77 2240 95 3 17 chr12 677285 677581 -143108874 - AluSq SINE Alu -21 292 1 214 392 75 22 chr12 677947 678174 -143108281 + L2 LINE L2 2807 3045 -227 513 47 0 0 chr12 678174 678238 -143108217 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2514 72 13 0 chr12 678245 678549 -143107906 - AluSx SINE Alu -4 308 1 325 175 16 16 chr12 678692 678755 -143107700 + L1MC4 LINE L1 6641 6703 -1339 808 222 124 29 chr12 678827 679277 -143107178 - L1ME4a LINE L1 -1 6120 5628 1736 139 9 73 chr12 679283 679599 -143106856 - AluSx SINE Alu -15 297 2 735 120 9 0 chr12 679620 679728 -143106727 + AluSg SINE Alu 2 110 -200 3710 176 33 65 chr12 679918 680779 -143105676 - L1MB4 LINE L1 -41 6139 5252 221 0 35 0 chr12 680779 680808 -143105647 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 3710 176 33 65 chr12 680808 680974 -143105481 - L1MB4 LINE L1 -928 5252 5082 2392 76 3 7 chr12 680974 681276 -143105179 - AluSg SINE Alu -9 301 1 3710 176 33 65 chr12 681276 681529 -143104926 - L1MB4 LINE L1 -1098 5082 4888 23 0 0 0 chr12 681786 681809 -143104646 + AT_rich Low_complexity Low_complexity 1 23 0 2392 97 7 0 chr12 681874 682184 -143104271 - AluSx SINE Alu 0 312 1 3528 25 7 0 chr12 682203 682611 -143103844 - L1PA5 LINE L1 -1 6153 5743 359 288 55 20 chr12 682749 682895 -143103560 + LTR16C LTR ERVL 247 397 -94 1470 150 0 67 chr12 682929 683037 -143103418 - AluJb SINE Alu -76 236 122 2395 69 3 0 chr12 683037 683325 -143103130 - AluY SINE Alu -22 289 1 1470 150 0 67 chr12 683325 683469 -143102986 - AluJb SINE Alu -190 122 1 570 200 50 0 chr12 683800 683920 -143102535 - L1MB7 LINE L1 -43 6141 6016 1192 201 42 113 chr12 683924 684333 -143102122 - MER21B LTR ERV1 -466 397 18 2363 100 0 19 chr12 684333 684644 -143101811 - AluSg SINE Alu -5 305 1 270 0 0 0 chr12 684644 684674 -143101781 + (T)n Simple_repeat Simple_repeat 1 30 0 203 231 15 15 chr12 684685 684750 -143101705 + T-rich Low_complexity Low_complexity 2 66 0 25 0 0 0 chr12 684751 684776 -143101679 + AT_rich Low_complexity Low_complexity 1 25 0 2413 102 0 10 chr12 684778 685092 -143101363 - AluSx SINE Alu -1 311 1 1081 123 31 44 chr12 685104 685215 -143101240 - L1MA4 LINE L1 -16 6284 6173 2041 162 0 0 chr12 685215 685524 -143100931 - AluJo SINE Alu -3 309 1 1081 123 31 44 chr12 685524 685640 -143100815 - L1MA4 LINE L1 -127 6173 6060 1142 190 0 74 chr12 685646 685891 -143100564 - L1MB7 LINE L1 -352 5832 5620 2427 84 0 3 chr12 685891 686190 -143100265 - AluSx SINE Alu -14 298 1 1142 190 0 74 chr12 686190 686256 -143100199 - L1MB7 LINE L1 -564 5620 5551 2707 125 29 7 chr12 686284 686731 -143099724 - MER4C LTR ERV1 -1 464 8 2357 84 3 7 chr12 687118 687415 -143099040 - AluSg SINE Alu -14 296 1 271 246 0 0 chr12 687537 687594 -143098861 - MLT1K LTR MaLR -4 584 528 195 42 0 0 chr12 687619 687643 -143098812 + (A)n Simple_repeat Simple_repeat 1 24 0 301 291 0 0 chr12 687755 687834 -143098621 - MLT1K LTR MaLR -178 410 332 279 77 0 0 chr12 688423 688462 -143097993 - MSTB LTR MaLR 0 426 388 2380 98 0 0 chr12 688465 688761 -143097694 + AluSg SINE Alu 1 296 -14 872 185 17 28 chr12 688769 688947 -143097508 + AluJb SINE Alu 137 312 0 1383 176 105 5 chr12 688951 689280 -143097175 - MSTB LTR MaLR -31 426 4 838 175 0 0 chr12 689352 689478 -143096977 - FLAM_C SINE Alu -17 126 1 2552 70 0 0 chr12 689480 689781 -143096674 - AluSx SINE Alu -11 301 1 1684 171 0 55 chr12 689781 690109 -143096346 - AluJb SINE Alu 0 312 3 569 255 110 57 chr12 690186 690277 -143096178 + MER115 DNA AcHobo 410 495 -198 1995 63 4 0 chr12 690277 690515 -143095940 - AluY SINE Alu -17 294 56 569 255 110 57 chr12 690515 690686 -143095769 + MER115 DNA AcHobo 495 686 -7 232 271 59 35 chr12 691110 691195 -143095260 - MIR SINE MIR -75 187 101 2342 88 0 0 chr12 691221 691515 -143094940 - AluSc SINE Alu -14 295 2 1909 172 0 0 chr12 691520 691810 -143094645 - AluJb SINE Alu -20 292 3 1167 81 64 47 chr12 691821 691971 -143094484 - AluSg/x SINE Alu -18 294 139 2291 108 0 3 chr12 691971 692266 -143094189 - AluSx SINE Alu -18 294 1 1167 81 64 47 chr12 692266 692287 -143094168 - AluSg/x SINE Alu -173 139 120 186 80 0 0 chr12 692288 692313 -143094142 - MIR SINE MIR -154 108 84 331 174 0 111 chr12 692343 692457 -143093998 - MER45A DNA AcHobo 0 178 81 192 286 0 0 chr12 692517 692559 -143093896 - MIR SINE MIR -136 72 31 283 285 191 45 chr12 692705 692731 -143093724 + L2 LINE L2 1528 1549 -1765 720 216 22 50 chr12 692731 692812 -143093643 - MER69A DNA AcHobo -2349 177 95 2212 88 51 0 chr12 692812 693107 -143093348 + AluY SINE Alu 1 310 -1 720 216 22 50 chr12 693107 693206 -143093249 - MER69A DNA AcHobo -2431 95 2 283 285 191 45 chr12 693206 693446 -143093009 + L2 LINE L2 1549 1833 -1481 1401 134 96 193 chr12 693461 694009 -143092446 - LTR36 LTR ERV1 -1 610 123 2192 42 48 31 chr12 694009 694298 -143092157 - AluY SINE Alu -6 305 12 1401 134 96 193 chr12 694298 694345 -143092110 - LTR36 LTR ERV1 -488 123 73 434 214 0 11 chr12 694493 694582 -143091873 + LTR23 LTR ERV1 329 416 -21 413 296 50 25 chr12 695148 695307 -143091148 + MER4B-int LTR ERV1 533 695 -6063 1847 158 31 74 chr12 695582 696030 -143090425 + MER4B-int LTR ERV1 1557 1985 -4346 543 256 0 0 chr12 696053 696229 -143090226 + (CA)n Simple_repeat Simple_repeat 1 176 0 2790 207 46 29 chr12 696229 696942 -143089513 + MER4B-int LTR ERV1 751 2657 -3674 2677 144 58 15 chr12 696942 697408 -143089047 - MER66B LTR ERV1 0 486 1 225 239 0 0 chr12 697408 697454 -143089001 + MER31A LTR ERV1 37 82 -403 226 217 0 0 chr12 697459 697505 -143088950 - MER54B LTR ERVL -2 791 746 2062 136 43 111 chr12 697505 697721 -143088734 + MER4B-int LTR ERV1 2718 2947 -3384 2046 152 7 0 chr12 697721 698017 -143088438 - AluSx SINE Alu -14 298 1 2062 136 43 111 chr12 698017 698052 -143088403 + MER4B-int LTR ERV1 2947 2983 -3348 2348 88 7 0 chr12 698052 698346 -143088109 - AluSp SINE Alu -16 297 2 2062 136 43 111 chr12 698346 698645 -143087810 + MER4B-int LTR ERV1 2983 3232 -3099 1129 154 0 38 chr12 698645 698898 -143087557 + AluSx SINE Alu 1 309 -3 252 125 21 0 chr12 698901 698949 -143087506 + MER4B-int LTR ERV1 3224 3272 -3059 503 177 0 10 chr12 698982 699078 -143087377 + MER4B-int LTR ERV1 3246 3340 -2991 427 198 66 19 chr12 699135 699241 -143087214 + MER4B-int LTR ERV1 3354 3464 -2867 1364 206 94 4 chr12 699400 699667 -143086788 + AluJb SINE Alu 1 291 -11 2571 63 3 0 chr12 699689 699991 -143086464 - AluY SINE Alu -8 303 1 3236 123 54 40 chr12 700051 700293 -143086162 - MER4A LTR ERV1 0 600 363 1969 108 9 97 chr12 700293 700635 -143085820 - AluSq SINE Alu 0 313 2 3236 123 54 40 chr12 700635 700984 -143085471 - MER4A LTR ERV1 -237 363 1 1777 104 104 15 chr12 701047 701366 -143085089 + AluSp SINE Alu 5 313 0 753 225 61 97 chr12 701425 701736 -143084719 - MER51C LTR ERV1 0 640 341 2046 112 3 7 chr12 702064 702359 -143084096 - AluSp SINE Alu -14 299 6 2182 133 32 61 chr12 702412 702552 -143083903 + LTR23 LTR ERV1 4 147 -290 2431 93 0 3 chr12 702552 702864 -143083591 - AluY SINE Alu 0 311 1 2182 133 32 61 chr12 702864 703165 -143083290 + LTR23 LTR ERV1 147 432 -5 3706 107 59 37 chr12 703234 703794 -143082661 + MER4B LTR ERV1 2 577 -33 2409 77 20 0 chr12 703794 704093 -143082362 - AluSg SINE Alu -5 305 1 3706 107 59 37 chr12 704093 704128 -143082327 + MER4B LTR ERV1 577 610 0 2610 59 3 0 chr12 705092 705399 -143081056 + AluY SINE Alu 1 308 -3 1118 95 0 0 chr12 705960 706097 -143080358 + FRAM SINE Alu 1 137 -39 200 35 35 0 chr12 706099 706128 -143080327 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 405 207 0 0 chr12 706217 706304 -143080151 + MER113 DNA MER1_type? 1 87 -434 22 0 0 0 chr12 706407 706429 -143080026 + AT_rich Low_complexity Low_complexity 1 22 0 226 276 165 24 chr12 706482 706609 -143079846 + MIR SINE MIR 53 197 -65 251 71 24 0 chr12 706610 706652 -143079803 + (TG)n Simple_repeat Simple_repeat 2 44 0 779 148 9 9 chr12 706652 706767 -143079688 - FLAM_C SINE Alu -18 115 1 203 318 16 0 chr12 706781 706844 -143079611 + L2 LINE L2 3193 3256 -16 197 282 111 50 chr12 707182 707327 -143079128 - MIR3 SINE MIR -62 146 7 395 233 41 48 chr12 707373 707519 -143078936 + MER103 DNA DNA 4 148 -18 2270 101 3 3 chr12 707854 708160 -143078295 - AluSp SINE Alu -7 306 1 2490 96 0 0 chr12 708891 709203 -143077252 - AluSx SINE Alu 0 312 1 693 313 26 49 chr12 709374 709639 -143076816 - MLT1I LTR MaLR 0 409 151 253 271 73 0 chr12 710133 710229 -143076226 + L1ME4a LINE L1 6015 6117 -4 2443 91 3 0 chr12 711122 711429 -143075026 - AluSg SINE Alu -2 308 1 2191 125 0 19 chr12 711439 711758 -143074697 - AluSp SINE Alu 0 313 1 460 122 61 12 chr12 711758 711830 -143074625 - AluJ/FRAM SINE Alu -10 302 224 976 136 0 32 chr12 711838 711993 -143074462 - AluJo SINE Alu -162 150 1 217 286 39 0 chr12 712559 712636 -143073819 - MIR SINE MIR -96 166 87 252 0 0 0 chr12 712752 712780 -143073675 + (TG)n Simple_repeat Simple_repeat 2 29 0 307 207 78 69 chr12 713163 713279 -143073176 + L1ME4a LINE L1 5836 5952 -169 1305 80 0 0 chr12 713294 713456 -143072999 + AluY SINE Alu 136 297 -14 563 241 86 26 chr12 713484 713716 -143072739 + MIR SINE MIR 17 262 0 675 181 132 0 chr12 713733 713877 -143072578 + MER45A DNA AcHobo 2 164 -14 2225 119 7 0 chr12 713942 714252 -143072203 - AluSx SINE Alu 0 312 1 395 222 57 45 chr12 714258 714331 -143072124 + L1ME4a LINE L1 5944 6015 -106 1414 153 122 49 chr12 714331 714618 -143071837 - AluJb SINE Alu -4 308 1 395 222 57 45 chr12 714618 714720 -143071735 + L1ME4a LINE L1 6015 6121 0 223 188 14 72 chr12 714753 714822 -143071633 - MIR SINE MIR -63 145 81 2485 78 0 0 chr12 715674 715970 -143070485 - AluSq SINE Alu -17 296 1 336 245 125 87 chr12 716135 716295 -143070160 - MIR SINE MIR -12 250 98 1444 137 34 0 chr12 716295 716529 -143069926 + L1MC1 LINE L1 6089 6330 -3 279 0 0 0 chr12 716530 716561 -143069894 + (CA)n Simple_repeat Simple_repeat 1 31 0 336 245 125 87 chr12 716561 716606 -143069849 - MIR SINE MIR -163 99 35 192 77 0 0 chr12 716669 716695 -143069760 + (TG)n Simple_repeat Simple_repeat 1 26 0 320 266 222 11 chr12 716724 716903 -143069552 + MIR SINE MIR 6 216 -46 1713 181 90 73 chr12 717377 717600 -143068855 - L1MC5 LINE L1 -46 7915 7697 2406 80 3 0 chr12 717600 717900 -143068555 + AluY SINE Alu 1 301 -10 1713 181 90 73 chr12 717900 718079 -143068376 - L1MC5 LINE L1 -264 7697 7523 1468 167 33 60 chr12 718079 718242 -143068213 - AluJo SINE Alu -19 293 140 2133 130 3 0 chr12 718242 718534 -143067921 - AluSq SINE Alu -20 293 1 1468 167 33 60 chr12 718534 718669 -143067786 - AluJo SINE Alu -172 140 3 1713 181 90 73 chr12 718669 718899 -143067556 - L1MC5 LINE L1 -438 7523 7271 834 106 0 0 chr12 719008 719131 -143067324 + (TTTC)n Simple_repeat Simple_repeat 2 124 0 1999 98 3 57 chr12 719137 719434 -143067021 - AluSq SINE Alu -32 281 1 2275 85 3 7 chr12 719848 720143 -143066312 - AluSg SINE Alu -16 294 1 2264 111 0 13 chr12 720473 720780 -143065675 + AluSx SINE Alu 1 303 -9 928 169 12 24 chr12 720797 720963 -143065492 + FRAM SINE Alu 1 164 -2 429 222 26 17 chr12 720975 721092 -143065363 - MER3 DNA MER1_type -46 163 46 2008 115 41 7 chr12 721548 721843 -143064612 - AluSx SINE Alu -7 305 1 386 285 82 13 chr12 721854 722012 -143064443 - MIR3 SINE MIR -6 202 34 1022 197 13 70 chr12 722531 722759 -143063696 + MER58A DNA MER1_type 1 215 -9 1854 132 0 53 chr12 722760 723079 -143063376 + AluJb SINE Alu 1 302 -10 1709 156 7 42 chr12 723510 723818 -143062637 - AluJo SINE Alu -15 297 1 765 177 0 0 chr12 723824 723948 -143062507 - FLAM_C SINE Alu -9 124 1 1125 74 0 0 chr12 724133 724268 -143062187 + AluSg/x SINE Alu 160 294 -18 225 65 0 0 chr12 727084 727115 -143059340 + (TC)n Simple_repeat Simple_repeat 2 32 0 939 286 39 16 chr12 727307 727671 -143058784 + L2 LINE L2 2942 3313 0 1772 163 4 11 chr12 728137 728413 -143058042 + AluJo SINE Alu 1 274 -38 2006 144 6 10 chr12 728565 728877 -143057578 + AluSx SINE Alu 1 311 -1 756 208 0 0 chr12 728889 729019 -143057436 + FLAM_A SINE Alu 2 131 -2 718 138 7 7 chr12 729074 729212 -143057243 + GA-rich Low_complexity Low_complexity 3 140 0 2202 123 0 7 chr12 729656 729964 -143056491 - AluSx SINE Alu -6 306 1 235 54 89 71 chr12 730564 730620 -143055835 - L1MB2 LINE L1 -2 6169 6113 2006 73 98 4 chr12 730620 730894 -143055561 + AluSx SINE Alu 12 311 -1 1862 151 3 13 chr12 731563 731874 -143054581 - AluJo SINE Alu -4 308 1 36 0 0 0 chr12 732411 732447 -143054008 + AT_rich Low_complexity Low_complexity 1 36 0 2814 177 46 41 chr12 732591 732656 -143053799 + MER82 DNA MER2_type 62 125 -528 2574 55 3 0 chr12 732656 732963 -143053492 - AluY SINE Alu -3 308 1 2814 177 46 41 chr12 732963 733486 -143052969 + MER82 DNA MER2_type 125 653 0 449 244 84 0 chr12 733756 733887 -143052568 + MER5A DNA MER1_type 48 189 0 219 225 79 45 chr12 733989 734078 -143052377 + MIR SINE MIR 56 147 -115 202 139 28 0 chr12 734292 734328 -143052127 + CT-rich Low_complexity Low_complexity 2 38 0 2370 106 0 0 chr12 734502 734804 -143051651 - AluSx SINE Alu -10 302 1 881 200 0 0 chr12 734846 734996 -143051459 - FRAM SINE Alu -30 146 1 207 0 0 0 chr12 734996 735019 -143051436 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1883 128 23 0 chr12 735019 735284 -143051171 - AluJo SINE Alu -30 282 12 4975 38 8 0 chr12 735695 736281 -143050174 - LTR10C LTR ERV1 0 591 1 1056 98 22 120 chr12 736762 736987 -143049468 + LTR23 LTR ERV1 94 296 -141 917 144 0 7 chr12 737073 737212 -143049243 + AluJb SINE Alu 4 141 -171 728 135 127 0 chr12 737443 737569 -143048886 + AluSc SINE Alu 168 309 0 1788 158 0 17 chr12 737602 737900 -143048555 - AluJb SINE Alu -8 304 12 207 96 58 0 chr12 738823 738875 -143047580 + (TA)n Simple_repeat Simple_repeat 2 56 0 3212 121 81 19 chr12 738896 739153 -143047302 - L1MC1 LINE L1 -6 6327 6087 890 18 0 9 chr12 739153 739262 -143047193 + (CATAG)n Simple_repeat Simple_repeat 2 109 0 3212 121 81 19 chr12 739262 739598 -143046857 - L1MC1 LINE L1 -246 6087 5697 2256 72 0 49 chr12 739603 739909 -143046546 + AluY SINE Alu 1 291 -20 1310 93 0 0 chr12 739909 740071 -143046384 + AluSg/x SINE Alu 132 293 -17 235 357 0 0 chr12 740083 740195 -143046260 + L1ME LINE L1 5746 5857 -313 2229 100 3 13 chr12 740416 740726 -143045729 + AluSg SINE Alu 1 307 -3 8147 157 51 12 chr12 741156 742764 -143043691 + L1MC/D LINE L1 89 1853 -4573 515 167 0 0 chr12 742764 742848 -143043607 + AluS SINE Alu 1 84 -229 566 152 29 0 chr12 742849 742954 -143043501 + L1MC/D LINE L1 1841 1948 -4478 2478 90 3 0 chr12 742981 743293 -143043162 + AluSq SINE Alu 1 313 0 628 214 79 5 chr12 743411 743594 -143042861 + L1MC/D LINE L1 2354 2589 -3947 1586 186 14 24 chr12 743595 743891 -143042564 + AluJo SINE Alu 1 293 -19 2368 87 13 0 chr12 743921 744221 -143042234 + AluSp SINE Alu 1 304 -9 4889 202 41 58 chr12 744221 744291 -143042164 + L1MC/D LINE L1 4062 4132 -2481 2204 120 10 0 chr12 744291 744599 -143041856 + AluSp SINE Alu 2 312 -1 4889 202 41 58 chr12 744599 745308 -143041147 + L1MC/D LINE L1 4132 4852 -1761 2287 110 0 3 chr12 745308 745609 -143040846 + AluSx SINE Alu 1 300 -12 4889 202 41 58 chr12 745609 745762 -143040693 + L1MC/D LINE L1 4852 5006 -1607 2205 93 0 4 chr12 745762 746064 -143040391 + AluSc SINE Alu 2 302 0 4889 202 41 58 chr12 746064 746147 -143040308 + L1MC/D LINE L1 5006 5089 -1524 2342 95 0 0 chr12 746147 746442 -143040013 + AluSg SINE Alu 1 295 -15 4889 202 41 58 chr12 746442 746987 -143039468 + L1MC/D LINE L1 5089 5587 -1026 2324 90 0 3 chr12 746987 747286 -143039169 + AluSg SINE Alu 1 298 -12 4889 202 41 58 chr12 747286 747665 -143038790 + L1MC/D LINE L1 5587 5971 -642 2294 100 0 3 chr12 747668 747968 -143038487 - AluSx SINE Alu -2 310 12 358 162 86 68 chr12 747968 748085 -143038370 - LTR36 LTR ERV1 -491 120 2 375 303 41 52 chr12 748093 748360 -143038095 + L2 LINE L2 1852 2115 -1199 1828 124 96 37 chr12 748406 748760 -143037695 - THE1C LTR MaLR 0 375 1 2119 112 0 30 chr12 748777 749080 -143037375 - AluSx SINE Alu -18 294 1 736 210 27 58 chr12 749170 749427 -143037028 - L2 LINE L2 -378 2936 2688 2305 113 3 0 chr12 749505 749815 -143036640 + AluSp SINE Alu 1 311 -2 1223 93 27 22 chr12 749815 750141 -143036314 + AluSg/x SINE Alu 129 458 0 1117 100 6 6 chr12 750147 750327 -143036128 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chr12 750895 750934 -143035521 + AT_rich Low_complexity Low_complexity 1 39 0 393 275 92 56 chr12 751142 751514 -143034941 + L1ME LINE L1 4686 5080 -1066 2302 143 37 8 chr12 751514 751891 -143034564 + MLT1B LTR MaLR 1 388 -2 393 275 92 56 chr12 751891 751983 -143034472 + L1ME LINE L1 5080 5167 -979 356 248 168 8 chr12 752133 752258 -143034197 - Charlie8 DNA MER1_type -2272 145 1 340 189 81 18 chr12 752903 753014 -143033441 + L1ME4a LINE L1 6004 6121 0 655 277 33 28 chr12 753724 753937 -143032518 - MIR SINE MIR -44 218 5 352 185 62 0 chr12 754353 754434 -143032021 + MIR SINE MIR 156 241 -21 557 273 95 63 chr12 755082 755430 -143031025 - LTR16A LTR ERVL 0 450 92 477 232 116 0 chr12 755539 755651 -143030804 - AluJo/FRAM SINE Alu -17 295 171 517 135 0 0 chr12 755651 755725 -143030730 + AluJb SINE Alu 192 265 -47 862 215 11 0 chr12 756447 756633 -143029822 - MER53 DNA DNA -1 188 1 985 141 37 0 chr12 756643 756806 -143029649 - MER3 DNA MER1_type -86 123 2 390 145 0 0 chr12 757570 757632 -143028823 + FLAM SINE Alu 71 132 -1 848 250 43 71 chr12 757700 757915 -143028540 + L1ME LINE L1 5360 5559 -562 2372 45 41 10 chr12 757915 758206 -143028249 - AluY SINE Alu -11 300 1 848 250 43 71 chr12 758206 758337 -143028118 + L1ME LINE L1 5559 5692 -429 2251 140 88 10 chr12 758357 758742 -143027713 - MSTA LTR MaLR -1 427 13 327 130 0 0 chr12 758742 758788 -143027667 - MSTA LTR MaLR -382 46 1 3620 228 50 50 chr12 759169 759249 -143027206 + L1MEc LINE L1 35 113 -6092 1612 67 5 14 chr12 759249 759459 -143026996 - AluY SINE Alu -21 290 83 3620 228 50 50 chr12 759459 760309 -143026146 + L1MEc LINE L1 113 961 -5244 2503 80 3 0 chr12 760309 760611 -143025844 + AluSp SINE Alu 1 303 -10 3620 228 50 50 chr12 760611 760694 -143025761 + L1MEc LINE L1 961 1008 -5197 1280 54 0 0 chr12 760694 760842 -143025613 + L1PA5 LINE L1 5998 6145 -9 3620 228 50 50 chr12 760842 760866 -143025589 + L1MEc LINE L1 1008 1030 -5175 270 229 0 0 chr12 760875 760936 -143025519 + L1MEc LINE L1 1034 1094 -5302 2220 149 65 88 chr12 760938 761213 -143025242 - L1MB8 LINE L1 -307 5871 5591 1526 173 39 14 chr12 761213 761496 -143024959 - AluJb SINE Alu -18 294 5 2220 149 65 88 chr12 761496 761629 -143024826 - L1MB8 LINE L1 -587 5591 5475 2126 99 60 0 chr12 761629 761913 -143024542 - AluSx SINE Alu -11 301 1 2220 149 65 88 chr12 761913 762027 -143024428 - L1MB8 LINE L1 -703 5475 5360 249 33 0 0 chr12 762048 762078 -143024377 + (TG)n Simple_repeat Simple_repeat 2 31 0 793 118 109 0 chr12 762083 762193 -143024262 - FRAM SINE Alu -22 154 33 2448 191 41 45 chr12 762194 762422 -143024033 - L1MB8 LINE L1 -1064 5082 4855 2377 75 0 3 chr12 762422 762716 -143023739 - AluY SINE Alu -18 293 1 2448 191 41 45 chr12 762716 763115 -143023340 - L1MB8 LINE L1 -1291 4855 4457 308 111 32 63 chr12 763119 763182 -143023273 - HY1 scRNA scRNA -1 111 51 370 183 0 0 chr12 763222 763304 -143023151 - L1MB8 LINE L1 -1688 4458 4377 1846 129 41 0 chr12 763309 763612 -143022843 + AluSx SINE Alu 1 314 0 297 217 29 152 chr12 763637 763775 -143022680 + MIR3 SINE MIR 88 208 0 1448 280 54 20 chr12 763934 764394 -143022061 - L3 LINE CR1 -5 1572 1097 1520 173 67 35 chr12 764404 764687 -143021768 + AluJb SINE Alu 1 292 -20 970 130 0 15 chr12 764707 764838 -143021617 + AluJo SINE Alu 1 129 -173 198 0 0 0 chr12 764889 764911 -143021544 + (T)n Simple_repeat Simple_repeat 1 22 0 474 303 47 14 chr12 765044 765317 -143021138 - L3 LINE CR1 -870 707 369 763 257 72 0 chr12 765411 765633 -143020822 - MIR SINE MIR 0 262 25 951 148 0 0 chr12 766153 766295 -143020160 + AluJo SINE Alu 137 278 -34 222 37 0 0 chr12 766308 766335 -143020120 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 29 47 0 0 chr12 767309 767352 -143019103 + AT_rich Low_complexity Low_complexity 1 43 0 1754 150 20 23 chr12 767354 767660 -143018795 - AluSx SINE Alu -7 305 1 2355 90 0 3 chr12 767729 768030 -143018425 + AluSp SINE Alu 1 300 -13 372 103 0 0 chr12 768084 768142 -143018313 + (TG)n Simple_repeat Simple_repeat 1 58 0 2383 54 3 10 chr12 768170 768464 -143017991 - AluY SINE Alu -19 292 1 2174 107 0 0 chr12 769720 770029 -143016426 - AluSx SINE Alu 0 309 1 2277 99 0 10 chr12 770323 770627 -143015828 + AluSx SINE Alu 1 301 -11 3503 218 63 24 chr12 771069 771125 -143015330 - L1ME1 LINE L1 -5 6230 6178 1579 141 118 8 chr12 771125 771388 -143015067 + AluJo SINE Alu 1 292 -20 3503 218 63 24 chr12 771388 772295 -143014160 - L1ME1 LINE L1 -57 6178 5227 877 148 0 40 chr12 772295 772444 -143014011 + FLAM_C SINE Alu 1 143 0 391 160 53 0 chr12 772451 772526 -143013929 - L1ME1 LINE L1 -985 5230 5152 722 194 40 0 chr12 772528 772652 -143013803 - FLAM_C SINE Alu -12 131 3 2385 90 3 0 chr12 772672 772971 -143013484 + AluSc SINE Alu 1 300 -9 390 171 53 0 chr12 772972 773048 -143013407 - L1ME1 LINE L1 -1059 5156 5077 * 1379 242 70 29 chr12 773042 773433 -143013022 - L1ME1 LINE L1 -3698 2517 2141 2368 71 0 19 chr12 773433 773741 -143012714 - AluY SINE Alu -9 302 1 1379 242 70 29 chr12 773741 773991 -143012464 - L1ME1 LINE L1 -4074 2141 1903 23 33 0 0 chr12 773991 774021 -143012434 + AT_rich Low_complexity Low_complexity 1 30 0 912 147 0 0 chr12 774021 774150 -143012305 - FLAM_C SINE Alu -3 130 2 316 259 84 35 chr12 774284 774427 -143012028 - L1ME1 LINE L1 -4577 1819 1670 184 97 0 32 chr12 774483 774514 -143011941 - MER5B DNA MER1_type -123 55 26 230 336 15 15 chr12 774710 774847 -143011608 + HAL1b LINE L1 1211 1347 -1 1535 99 9 0 chr12 774895 775106 -143011349 + AluSg/x SINE Alu 90 302 -10 465 284 117 94 chr12 775213 775424 -143011031 - L1MC4a LINE L1 -1884 5924 5719 1212 146 0 0 chr12 775424 775588 -143010867 - FRAM SINE Alu -2 164 1 465 284 117 94 chr12 775588 775611 -143010844 - L1MC4a LINE L1 -2089 5719 5698 2215 97 3 3 chr12 775611 775901 -143010554 - AluSg SINE Alu -6 304 15 465 284 117 94 chr12 775901 776120 -143010335 - L1MC4a LINE L1 -2110 5698 5460 189 0 0 0 chr12 776156 776177 -143010278 + (T)n Simple_repeat Simple_repeat 1 21 0 1633 173 66 4 chr12 776187 776459 -143009996 + AluJo SINE Alu 1 289 -23 308 289 161 51 chr12 776524 776569 -143009886 - L1MC4a LINE L1 -748 5398 5359 2173 112 3 0 chr12 776569 776865 -143009590 - AluSx SINE Alu -5 307 11 308 289 161 51 chr12 776865 777428 -143009027 - L1MC4a LINE L1 -787 5359 4723 333 186 0 29 chr12 778162 778256 -143008199 + AluJ/FRAM SINE Alu 224 302 0 230 238 0 0 chr12 780143 780185 -143006270 + polypyrimidine Low_complexity Low_complexity 1 42 0 344 291 173 53 chr12 781628 782027 -143004428 + L1M2 LINE L1 536 982 -5867 22 0 0 0 chr12 782752 782774 -143003681 + AT_rich Low_complexity Low_complexity 1 22 0 2249 100 3 0 chr12 783638 783947 -143002508 + AluSg SINE Alu 1 310 0 185 234 0 21 chr12 784870 784917 -143001538 - MIR SINE MIR -121 141 96 1315 80 0 58 chr12 785250 785438 -143001017 - AluSc SINE Alu -3 306 130 2498 72 3 0 chr12 785699 786006 -143000449 + AluSg SINE Alu 1 308 -2 2158 21 0 0 chr12 786314 786551 -142999904 - AluYb8 SINE Alu -2 316 80 33 25 0 0 chr12 786953 786993 -142999462 + AT_rich Low_complexity Low_complexity 1 40 0 28 29 0 0 chr12 787216 787251 -142999204 + AT_rich Low_complexity Low_complexity 1 35 0 2422 77 0 0 chr12 787272 787572 -142998883 - AluSg SINE Alu -10 300 1 728 228 162 5 chr12 787661 787858 -142998597 + MIR SINE MIR 5 232 -30 2026 111 6 59 chr12 788704 789028 -142997427 - AluSx SINE Alu -5 307 1 1255 183 71 80 chr12 789851 789989 -142996466 + MER2 DNA MER2_type 1 139 -206 2150 108 0 14 chr12 789989 790286 -142996169 - AluSx SINE Alu -2 310 18 1255 183 71 80 chr12 790286 790485 -142995970 + MER2 DNA MER2_type 139 335 -10 2284 103 6 0 chr12 790678 790989 -142995466 - AluSp SINE Alu 0 313 1 369 217 0 0 chr12 791025 791094 -142995361 - Tigger7 DNA MER2_type -31 2456 2388 800 118 118 123 chr12 791111 791245 -142995210 - Tigger7 DNA MER2_type -489 244 110 2265 105 0 16 chr12 791245 791549 -142994906 + AluSq SINE Alu 1 299 -14 800 118 118 123 chr12 791549 791601 -142994854 - Tigger7 DNA MER2_type -623 110 59 341 286 34 84 chr12 791870 792108 -142994347 - L2 LINE L2 -941 2373 2148 2433 79 7 0 chr12 792303 792608 -142993847 + AluSp SINE Alu 7 313 0 742 150 64 132 chr12 792770 792808 -142993647 - MER3 DNA MER1_type -3 206 167 1882 117 34 0 chr12 792808 793073 -142993382 - AluSq SINE Alu -39 274 1 742 150 64 132 chr12 793073 793209 -142993246 - MER3 DNA MER1_type -42 167 47 1656 181 7 10 chr12 793209 793497 -142992958 + AluJo SINE Alu 1 287 -25 742 150 64 132 chr12 793497 793541 -142992914 - MER3 DNA MER1_type -162 47 2 715 194 0 43 chr12 793592 793731 -142992724 + FLAM_C SINE Alu 1 133 0 204 208 198 52 chr12 793947 794043 -142992412 - L2 LINE L2 -1414 1900 1791 734 143 7 97 chr12 794044 794198 -142992257 + L1PB4 LINE L1 6011 6150 -6 23 0 0 0 chr12 794206 794229 -142992226 + AT_rich Low_complexity Low_complexity 1 23 0 2293 92 7 0 chr12 794428 794720 -142991735 - AluSg SINE Alu -16 294 1 2229 114 0 0 chr12 794722 795020 -142991435 - AluSx SINE Alu -14 298 1 2403 97 0 0 chr12 795184 795494 -142990961 - AluSg SINE Alu 0 310 1 2040 129 0 16 chr12 796070 796379 -142990076 - AluSx SINE Alu -8 304 1 2328 88 7 3 chr12 796754 797051 -142989404 - AluSg SINE Alu -12 298 1 944 185 82 26 chr12 797113 797147 -142989308 - L1MC4a LINE L1 -903 6905 6874 2030 121 10 13 chr12 797147 797445 -142989010 - AluSx SINE Alu -15 297 1 944 185 82 26 chr12 797445 797642 -142988813 - L1MC4a LINE L1 -934 6874 6661 685 187 261 84 chr12 797664 797916 -142988539 - MLT1A1 LTR MaLR 0 365 47 2474 70 3 3 chr12 797916 798217 -142988238 - AluSp SINE Alu -12 301 1 685 187 261 84 chr12 798217 798274 -142988181 - MLT1A1 LTR MaLR -318 47 1 558 146 222 27 chr12 798309 798494 -142987961 + Charlie5 DNA MER1_type 2364 2584 -28 2189 91 0 10 chr12 798941 799239 -142987216 - AluY SINE Alu -15 296 2 1632 115 0 0 chr12 799461 799678 -142986777 - AluSx SINE Alu -95 217 1 649 195 51 0 chr12 799765 799883 -142986572 - AluJb SINE Alu -178 134 11 254 228 89 50 chr12 800069 800170 -142986285 - L1ME4a LINE L1 -19 6102 5998 417 156 0 0 chr12 800348 800425 -142986030 + (TG)n Simple_repeat Simple_repeat 1 77 0 2453 65 7 0 chr12 800921 801214 -142985241 + AluSp SINE Alu 1 295 -18 231 303 202 0 chr12 801580 801679 -142984776 - L2 LINE L2 -4 3309 3191 234 224 224 36 chr12 801679 801871 -142984584 - L1ME4a LINE L1 -202 5919 5692 313 226 24 89 chr12 802514 802638 -142983817 - L1ME4a LINE L1 -458 5663 5548 603 162 0 23 chr12 803392 803627 -142982828 + AluJo SINE Alu 24 290 -22 216 237 130 95 chr12 803699 803868 -142982587 - MIR SINE MIR -30 232 58 1709 166 4 4 chr12 803996 804273 -142982182 - AluJo SINE Alu -31 281 5 393 39 0 0 chr12 804338 804389 -142982066 + (TG)n Simple_repeat Simple_repeat 2 52 0 2184 92 3 3 chr12 804389 804673 -142981782 - AluSc SINE Alu -25 284 1 2304 95 10 0 chr12 805095 805401 -142981054 - AluSc SINE Alu 0 309 1 31 0 0 0 chr12 806234 806265 -142980190 + AT_rich Low_complexity Low_complexity 1 31 0 2275 108 7 0 chr12 806269 806574 -142979881 - AluSx SINE Alu -5 307 1 21 0 0 0 chr12 806581 806602 -142979853 + AT_rich Low_complexity Low_complexity 1 21 0 2280 109 10 0 chr12 807305 807645 -142978810 - AluSx SINE Alu 0 343 1 445 200 178 0 chr12 808904 809039 -142977416 + MER112 DNA MER1_type 1 159 -101 210 37 0 0 chr12 809044 809071 -142977384 + (CAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr12 809516 809538 -142976917 + AT_rich Low_complexity Low_complexity 1 22 0 223 342 63 9 chr12 810273 810384 -142976071 - MIR SINE MIR -70 192 76 1848 114 8 0 chr12 810501 810747 -142975708 - AluSx SINE Alu -64 248 1 1026 138 71 55 chr12 810750 810842 -142975613 - MER33 DNA MER1_type -2304 281 192 1949 124 3 54 chr12 810842 811157 -142975298 - AluJo SINE Alu -13 299 1 1026 138 71 55 chr12 811157 811311 -142975144 - MER33 DNA MER1_type -2393 192 31 1249 152 4 52 chr12 811311 811542 -142974913 + AluJo SINE Alu 1 220 -92 1185 199 0 14 chr12 811596 811817 -142974638 + AluJo SINE Alu 3 220 -92 243 0 0 0 chr12 811852 811879 -142974576 + (A)n Simple_repeat Simple_repeat 1 27 0 1460 210 0 10 chr12 811883 812174 -142974281 + AluJo SINE Alu 3 290 -22 22 0 0 0 chr12 812177 812199 -142974256 + AT_rich Low_complexity Low_complexity 1 22 0 403 204 97 9 chr12 812455 812568 -142973887 - L1MA10 LINE L1 0 6334 6212 * 1740 260 96 28 chr12 812566 813346 -142973109 - HAL1 LINE L1 -499 2008 1176 2017 90 11 4 chr12 813366 813632 -142972823 - AluY SINE Alu -35 276 9 25 0 0 0 chr12 813697 813722 -142972733 + AT_rich Low_complexity Low_complexity 1 25 0 320 284 153 26 chr12 813747 813937 -142972518 - HAL1 LINE L1 -1631 876 663 479 324 135 30 chr12 813960 814413 -142972042 - L1M4 LINE L1 -3360 2786 2251 2133 128 3 0 chr12 814413 814710 -142971745 - AluSq SINE Alu -15 298 1 479 324 135 30 chr12 814710 814864 -142971591 - L1M4 LINE L1 -3895 2251 2115 21 0 0 0 chr12 815093 815114 -142971341 + AT_rich Low_complexity Low_complexity 1 21 0 191 337 20 61 chr12 815131 815229 -142971226 + MIR SINE MIR 4 97 -165 661 104 85 0 chr12 815250 815356 -142971099 - AluJb SINE Alu -193 119 5 440 177 125 0 chr12 815362 815458 -142970997 + MIR SINE MIR 155 262 0 186 43 0 0 chr12 815775 815798 -142970657 + (TG)n Simple_repeat Simple_repeat 2 24 0 1544 168 59 66 chr12 815820 816212 -142970243 - MLT2C1 LTR ERVL -8 389 1 2144 104 0 0 chr12 816552 816830 -142969625 + AluSg SINE Alu 3 280 -30 978 130 86 12 chr12 817478 817640 -142968815 - AluJo SINE Alu -10 302 129 523 255 78 52 chr12 817855 818086 -142968369 - MLT1L LTR MaLR -377 238 2 803 165 0 0 chr12 818215 818342 -142968113 - AluJo SINE Alu -180 132 6 198 224 0 0 chr12 818721 818770 -142967685 + CT-rich Low_complexity Low_complexity 3 51 0 321 26 0 0 chr12 819169 819207 -142967248 + (CA)n Simple_repeat Simple_repeat 1 38 0 2230 101 0 10 chr12 820249 820557 -142965898 - AluSg SINE Alu -5 305 1 23 33 0 0 chr12 820762 820792 -142965663 + AT_rich Low_complexity Low_complexity 1 30 0 247 253 154 11 chr12 820878 820969 -142965486 + MIR SINE MIR 111 214 -48 3018 171 60 23 chr12 821705 822353 -142964102 - L1MB8 LINE L1 -6 6172 5501 1637 196 73 100 chr12 822366 822715 -142963740 - L1MB8 LINE L1 -2106 4040 3683 1444 214 18 11 chr12 822715 822995 -142963460 - AluJo SINE Alu -30 282 1 1637 196 73 100 chr12 822995 823270 -142963185 - L1MB8 LINE L1 -2463 3683 3433 1545 154 91 51 chr12 823270 823620 -142962835 + THE1B LTR MaLR 1 364 0 1637 196 73 100 chr12 823620 823667 -142962788 - L1MB8 LINE L1 -2713 3433 3386 1607 161 58 14 chr12 823826 824117 -142962338 - AluSx SINE Alu -8 304 1 494 247 60 0 chr12 824138 824288 -142962167 - L1MEc LINE L1 -4320 2076 1918 542 84 0 0 chr12 824448 824519 -142961936 - AluS SINE Alu -242 71 1 2247 89 0 13 chr12 825606 825910 -142960545 + AluSx SINE Alu 1 300 -12 2450 62 0 3 chr12 826131 826435 -142960020 - AluY SINE Alu -8 303 1 23 0 0 0 chr12 826594 826617 -142959838 + AT_rich Low_complexity Low_complexity 1 23 0 1849 142 3 27 chr12 827079 827374 -142959081 - AluJb SINE Alu -24 288 1 1365 194 0 86 chr12 827506 827628 -142958827 + AluJo SINE Alu 5 136 -176 2044 112 7 0 chr12 827628 827905 -142958550 - AluSx SINE Alu -10 302 24 1365 194 0 86 chr12 827905 828096 -142958359 + AluJo SINE Alu 136 291 -21 848 163 113 17 chr12 828104 828343 -142958112 - MER69 DNA AcHobo -100 2426 2165 21 0 0 0 chr12 828367 828388 -142958067 + AT_rich Low_complexity Low_complexity 1 21 0 227 44 44 0 chr12 828402 828447 -142958008 - L1MB4 LINE L1 0 6180 6134 369 0 0 0 chr12 829367 829408 -142957047 + (TG)n Simple_repeat Simple_repeat 2 42 0 1446 169 8 0 chr12 829408 829650 -142956805 - AluJo SINE Alu -67 245 2 1074 91 0 9 chr12 831444 831707 -142954748 + AluSx SINE Alu 1 307 -3 1605 147 13 102 chr12 832211 832373 -142954082 - L1MB3 LINE L1 -11 6172 6062 1892 95 0 0 chr12 832373 832616 -142953839 - AluSq SINE Alu -70 243 1 1605 147 13 102 chr12 832616 832835 -142953620 - L1MB3 LINE L1 -121 6062 5825 212 76 76 45 chr12 832848 832914 -142953541 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 1617 183 25 53 chr12 832914 833307 -142953148 - L1MB3 LINE L1 -364 5816 5435 22 0 0 0 chr12 833801 833823 -142952632 + AT_rich Low_complexity Low_complexity 1 22 0 762 139 9 0 chr12 835121 835236 -142951219 + FLAM_C SINE Alu 2 117 -16 2683 32 0 0 chr12 835652 835962 -142950493 - AluY SINE Alu -1 310 1 564 181 147 0 chr12 836234 836350 -142950105 - FLAM_C SINE Alu 0 133 1 2388 89 0 0 chr12 836705 837007 -142949448 - AluSq SINE Alu -11 302 1 32 0 0 0 chr12 837169 837201 -142949254 + AT_rich Low_complexity Low_complexity 1 32 0 2237 97 10 0 chr12 837913 838202 -142948253 + AluSg SINE Alu 1 292 -18 206 258 106 30 chr12 840291 840357 -142946098 - L2 LINE L2 -4 3309 3239 368 229 41 118 chr12 840611 840856 -142945599 + L1MEd LINE L1 983 1208 -4911 1664 159 31 7 chr12 840911 841201 -142945254 + AluJo SINE Alu 9 305 -7 2151 82 26 49 chr12 841975 842280 -142944175 + AluSx SINE Alu 1 298 -14 3410 121 17 19 chr12 842616 843144 -142943311 - MER1A DNA MER1_type 0 527 1 321 306 136 35 chr12 843825 844083 -142942372 + L1MEd LINE L1 82 365 -5754 1477 176 3 60 chr12 844212 844531 -142941924 - AluJo SINE Alu -11 301 1 331 243 134 102 chr12 844713 845154 -142941301 + L1MEd LINE L1 682 1136 -4983 1078 105 0 0 chr12 845154 845297 -142941158 + AluSg/x SINE Alu 155 297 -12 2228 92 3 44 chr12 845600 845917 -142940538 + AluSx SINE Alu 1 304 -8 869 184 32 0 chr12 845951 846136 -142940319 - L1MB5 LINE L1 0 6174 5984 423 258 53 33 chr12 846250 846401 -142940054 + MIR3 SINE MIR 14 167 -41 2247 192 80 12 chr12 846462 846566 -142939889 - L1MB5 LINE L1 -36 6138 6035 1450 224 171 9 chr12 846566 847271 -142939184 - L1MC4 LINE L1 -743 5639 5401 1047 145 98 28 chr12 847279 847493 -142938962 - MER46A DNA MER2_type -7 229 1 5505 218 62 28 chr12 847497 848410 -142938045 - L1MC4 LINE L1 -981 5401 4408 1722 181 7 16 chr12 848410 848719 -142937736 - AluJo SINE Alu -6 306 1 5505 218 62 28 chr12 848719 849407 -142937048 - L1MC4 LINE L1 -1974 4408 3745 4361 191 105 56 chr12 849421 850031 -142936424 - L1MC4 LINE L1 -3434 2948 2369 2385 88 0 3 chr12 850031 850336 -142936119 - AluSg SINE Alu -6 304 1 4361 191 105 56 chr12 850336 851580 -142934875 - L1MC4 LINE L1 -4013 2369 997 190 260 250 0 chr12 851586 851686 -142934769 - MIR SINE MIR -10 252 128 2021 134 0 13 chr12 851844 852151 -142934304 - AluSx SINE Alu -8 304 2 26 30 0 0 chr12 852714 852747 -142933708 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr12 852881 852912 -142933543 + AT_rich Low_complexity Low_complexity 1 31 0 544 182 54 68 chr12 853024 853172 -142933283 - L1ME2 LINE L1 -52 6112 5967 322 286 61 56 chr12 853302 853533 -142932922 - L1MCa LINE L1 -4196 1884 1653 271 153 129 0 chr12 853623 853708 -142932747 + L1M4 LINE L1 1257 1352 -5190 625 205 41 41 chr12 853897 854068 -142932387 - L1MCa LINE L1 -5580 490 320 982 181 52 5 chr12 854072 854265 -142932190 + MER3 DNA MER1_type 3 204 -5 488 240 143 41 chr12 854378 854574 -142931881 - L1MCa LINE L1 -5853 217 2 2190 108 0 0 chr12 855460 855772 -142930683 - AluSx SINE Alu 0 312 1 30 77 0 0 chr12 855860 855925 -142930530 + AT_rich Low_complexity Low_complexity 1 65 0 2201 112 0 26 chr12 855959 856272 -142930183 + AluSx SINE Alu 1 305 -7 1096 186 0 61 chr12 856381 856612 -142929843 - MER20 DNA MER1_type -1 218 2 476 262 160 44 chr12 858661 859024 -142927431 - L1MC5 LINE L1 -207 7754 7350 1658 149 51 70 chr12 859075 859199 -142927256 + Charlie1b DNA MER1_type 104 229 -2532 2248 111 0 0 chr12 859199 859496 -142926959 + AluSx SINE Alu 1 297 -15 1658 149 51 70 chr12 859496 859799 -142926656 + Charlie1b DNA MER1_type 229 523 0 2395 71 0 0 chr12 860012 860306 -142926149 - AluY SINE Alu -5 306 13 191 376 55 24 chr12 860998 861163 -142925292 + L2 LINE L2 2415 2584 -730 356 340 97 59 chr12 861777 862098 -142924357 - L2 LINE L2 -16 3256 2924 378 288 56 24 chr12 862509 862634 -142923821 + MIR SINE MIR 26 154 -108 1762 144 3 63 chr12 862980 863299 -142923156 + AluJb SINE Alu 1 300 -12 282 202 149 43 chr12 863476 863570 -142922885 - L2 LINE L2 -16 3297 3194 2114 122 7 3 chr12 863614 863909 -142922546 + AluSx SINE Alu 1 296 -16 2596 223 38 18 chr12 864887 864966 -142921489 - L1MB8 LINE L1 0 6178 6102 2623 110 34 63 chr12 864966 865235 -142921220 - MER57B LTR ERV1 0 434 182 2428 90 0 0 chr12 865235 865546 -142920909 + AluSx SINE Alu 1 311 -1 2623 110 34 63 chr12 865546 865723 -142920732 - MER57B LTR ERV1 -252 182 1 2596 223 38 18 chr12 865723 866022 -142920433 - L1MB8 LINE L1 -76 6102 5810 303 28 0 0 chr12 866022 866058 -142920397 + (TG)n Simple_repeat Simple_repeat 2 37 0 2596 223 38 18 chr12 866058 866345 -142920110 - L1MB8 LINE L1 -368 5810 5499 1791 164 4 7 chr12 866348 866654 -142919801 - AluJb SINE Alu 0 310 6 740 208 77 11 chr12 866655 866838 -142919617 - MLT1C LTR MaLR -272 195 1 320 301 63 28 chr12 866847 866990 -142919465 - L2 LINE L2 -5 3308 3161 322 346 45 11 chr12 867281 867460 -142918995 - L2 LINE L2 -601 2713 2529 26 64 0 0 chr12 867606 867653 -142918802 + AT_rich Low_complexity Low_complexity 1 47 0 1876 121 7 37 chr12 867672 867970 -142918485 - AluSx SINE Alu -23 289 1 1381 197 31 76 chr12 867990 868064 -142918391 + MER58B DNA MER1_type 3 79 -2341 1665 167 0 21 chr12 868064 868352 -142918103 - AluJo SINE Alu -7 305 24 1381 197 31 76 chr12 868352 868632 -142917823 + MER58B DNA MER1_type 79 341 0 2019 149 39 42 chr12 869037 869446 -142917009 - L1MB7 LINE L1 -21 6163 5756 1658 178 27 56 chr12 869547 869923 -142916532 - MLT1A1 LTR MaLR 0 365 1 185 174 87 0 chr12 870003 870049 -142916406 + L2 LINE L2 3264 3313 0 255 103 0 0 chr12 870226 870265 -142916190 + MADE1 DNA Mariner 42 80 0 189 0 0 0 chr12 870421 870442 -142916013 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 243 0 0 0 chr12 870867 870894 -142915561 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1959 138 0 3 chr12 870897 871180 -142915275 - AluSx SINE Alu -30 282 1 1778 143 77 29 chr12 871204 871583 -142914872 - Charlie1 DNA MER1_type -19 2742 2346 274 304 0 14 chr12 871585 871654 -142914801 - Charlie1 DNA MER1_type -2691 70 3 389 204 261 42 chr12 871675 871817 -142914638 + MER5A DNA MER1_type 11 183 -6 1931 134 6 19 chr12 872065 872379 -142914076 - AluSx SINE Alu -2 310 1 26 0 0 0 chr12 872756 872782 -142913673 + AT_rich Low_complexity Low_complexity 1 26 0 2827 13 0 0 chr12 872829 873138 -142913317 - AluYa5 SINE Alu -2 309 1 22 70 0 0 chr12 873163 873206 -142913249 + AT_rich Low_complexity Low_complexity 1 43 0 416 240 39 10 chr12 873476 873580 -142912875 + MIR SINE MIR 14 120 -142 292 281 157 7 chr12 873806 873959 -142912496 - MIR SINE MIR -6 256 81 204 412 0 15 chr12 875536 875604 -142910851 + MIR3 SINE MIR 15 81 -127 2181 104 13 13 chr12 875740 876048 -142910407 - AluSc SINE Alu -1 308 1 180 0 0 0 chr12 876440 876460 -142909995 + (T)n Simple_repeat Simple_repeat 1 20 0 7714 20 3 1 chr12 877514 878924 -142907531 - L1PA4 LINE L1 -4 6151 4741 1604 164 10 10 chr12 881702 881994 -142904461 - AluJo SINE Alu -20 292 1 1560 167 64 4 chr12 882029 882293 -142904162 + AluJo SINE Alu 1 280 -32 2175 92 34 0 chr12 882299 882591 -142903864 - AluSx SINE Alu -10 302 1 1157 189 160 39 chr12 882675 882982 -142903473 + MER2 DNA MER2_type 1 344 0 2425 78 0 3 chr12 883775 884082 -142902373 - AluSc SINE Alu -3 306 1 22 56 0 19 chr12 884084 884109 -142902346 + AT_rich Low_complexity Low_complexity 1 25 -28 2090 127 0 19 chr12 884109 884423 -142902032 + AluSx SINE Alu 1 308 -4 22 56 0 19 chr12 884423 884451 -142902004 + AT_rich Low_complexity Low_complexity 25 53 0 1966 159 3 0 chr12 886138 886433 -142900022 - AluSx SINE Alu -16 296 1 258 376 56 16 chr12 886591 886716 -142899739 + MIR SINE MIR 21 150 -58 1858 136 3 42 chr12 887651 887959 -142898496 - AluJo SINE Alu -16 296 1 181 85 0 64 chr12 887983 888030 -142898425 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2096 123 7 19 chr12 892044 892354 -142894101 - AluSx SINE Alu -6 306 1 2146 89 7 3 chr12 894320 894602 -142891853 - AluSc SINE Alu -25 284 2 2230 97 10 0 chr12 894785 895083 -142891372 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr12 895679 895705 -142890750 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr12 897434 897477 -142888978 + AT_rich Low_complexity Low_complexity 1 43 0 1093 204 5 15 chr12 898505 898711 -142887744 - MER20 DNA MER1_type -2 217 14 2142 121 0 0 chr12 899556 899846 -142886609 - AluSx SINE Alu -22 290 1 1771 99 48 79 chr12 900058 900380 -142886075 - AluSx SINE Alu 0 313 1 882 144 8 0 chr12 901978 902110 -142884345 + FRAM SINE Alu 26 158 -18 658 340 25 5 chr12 902617 902820 -142883635 - MIR SINE MIR -44 218 12 2370 68 0 3 chr12 904070 904364 -142882091 + AluY SINE Alu 1 293 -18 343 249 39 25 chr12 904596 904732 -142881723 + L1PA8A LINE L1 5671 5808 -323 314 267 28 20 chr12 904798 904947 -142881508 + L1ME4a LINE L1 1197 6049 0 2391 93 0 3 chr12 904996 905308 -142881147 - AluSp SINE Alu -2 311 1 329 153 17 0 chr12 906863 906922 -142879533 - HsTC2 DNA Tc2 -2 1896 1837 216 0 0 0 chr12 907457 907481 -142878974 + (T)n Simple_repeat Simple_repeat 1 24 0 182 309 0 0 chr12 910064 910106 -142876349 - L3b LINE CR1 -22 1561 1520 2016 116 0 7 chr12 910145 910422 -142876033 - AluSx SINE Alu -17 295 21 1100 127 0 0 chr12 911821 911978 -142874477 + AluSg/x SINE Alu 131 287 -23 2293 84 0 3 chr12 917480 917767 -142868688 + AluY SINE Alu 1 286 -25 2286 110 0 3 chr12 917895 918196 -142868259 - AluSx SINE Alu -12 300 1 2235 102 7 0 chr12 919087 919381 -142867074 - AluSp SINE Alu -17 296 1 219 88 0 0 chr12 919537 919571 -142866884 + (T)n Simple_repeat Simple_repeat 1 34 0 379 203 14 0 chr12 919640 919714 -142866741 + Charlie1 DNA MER1_type 46 120 -2641 1102 139 12 6 chr12 919716 919881 -142866574 + AluJo SINE Alu 127 292 -20 337 216 137 10 chr12 919881 919983 -142866472 + Charlie1 DNA MER1_type 2149 2263 -498 1280 26 0 7 chr12 920021 920174 -142866281 - L1PA4 LINE L1 -3 6152 6001 844 195 113 15 chr12 920201 920396 -142866059 - MER58A DNA MER1_type 0 224 11 251 257 114 0 chr12 920657 920762 -142865693 + L1MC4a LINE L1 5371 5487 -2321 408 216 84 96 chr12 920899 920916 -142865539 + L1MC4a LINE L1 5716 5732 -2076 1879 172 0 7 chr12 920916 921219 -142865236 + AluJb SINE Alu 1 301 -11 408 216 84 96 chr12 921219 921368 -142865087 + L1MC4a LINE L1 5732 5880 -1928 2343 82 0 0 chr12 921485 921791 -142864664 + AluY SINE Alu 1 306 0 2215 123 0 0 chr12 921879 922172 -142864283 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr12 923358 923390 -142863065 + AT_rich Low_complexity Low_complexity 1 32 0 2277 131 0 0 chr12 923390 923702 -142862753 - AluSx SINE Alu 0 312 1 477 0 0 0 chr12 924830 924883 -142861572 + (CA)n Simple_repeat Simple_repeat 1 53 0 236 198 74 0 chr12 924966 925047 -142861408 + (TTA)n Simple_repeat Simple_repeat 1 87 0 2403 92 3 0 chr12 926146 926449 -142860006 + AluY SINE Alu 1 304 -7 971 169 0 41 chr12 926516 926688 -142859767 - AluJo/FRAM SINE Alu -18 294 130 2224 96 7 3 chr12 926691 926982 -142859473 - AluSx SINE Alu -20 292 1 1215 125 171 75 chr12 927242 927523 -142858932 - AluSx SINE Alu -4 308 1 201 74 0 0 chr12 927951 927978 -142858477 + (T)n Simple_repeat Simple_repeat 1 27 0 1961 91 4 8 chr12 927978 928230 -142858225 - AluSq SINE Alu -62 251 1 1924 147 0 17 chr12 929958 930257 -142856198 + AluJb SINE Alu 1 294 -18 182 250 0 0 chr12 930748 930788 -142855667 + L2 LINE L2 3224 3263 -9 221 219 0 55 chr12 932730 932803 -142853652 - L2 LINE L2 -36 3277 3209 1295 181 82 25 chr12 934699 934980 -142851475 + AluJo SINE Alu 1 297 -15 2224 111 3 7 chr12 934980 935277 -142851178 + AluSx SINE Alu 1 297 -15 195 42 0 0 chr12 938637 938661 -142847794 + (CCA)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr12 939217 939238 -142847217 + AT_rich Low_complexity Low_complexity 1 21 0 1895 116 10 43 chr12 939675 939976 -142846479 + AluSx SINE Alu 1 291 -21 945 149 124 146 chr12 940105 940461 -142845994 + MER46B DNA MER2_type 5 227 -9 731 228 25 0 chr12 940522 940684 -142845771 + FRAM SINE Alu 1 166 0 1574 147 90 4 chr12 942817 943096 -142843359 + AluJb SINE Alu 1 303 -9 2221 114 10 7 chr12 943651 943958 -142842497 - AluSx SINE Alu -4 308 1 200 269 0 0 chr12 944322 944389 -142842066 + (CTG)n Simple_repeat Simple_repeat 3 69 0 647 143 109 0 chr12 945543 945662 -142840793 + AluJb SINE Alu 2 133 -179 1236 109 0 75 chr12 945692 945893 -142840562 + AluSg/x SINE Alu 109 294 -18 890 267 99 44 chr12 945903 946330 -142840125 + L1ME3A LINE L1 5470 5962 -208 1822 141 6 44 chr12 946330 946650 -142839805 - AluJo SINE Alu -4 308 1 890 267 99 44 chr12 946650 946856 -142839599 + L1ME3A LINE L1 5962 6155 -15 628 161 28 133 chr12 946897 947108 -142839347 + L1ME3A LINE L1 5902 6090 -80 2078 119 25 0 chr12 947115 947400 -142839055 + AluSq SINE Alu 11 302 -11 2142 99 3 20 chr12 947405 947708 -142838747 + AluSx SINE Alu 1 298 -14 2032 135 7 7 chr12 947712 948009 -142838446 + AluSq SINE Alu 1 297 -16 1269 109 0 0 chr12 948009 948174 -142838281 + AluSg/x SINE Alu 134 298 -14 2391 224 70 19 chr12 948181 948216 -142838239 + L1M4 LINE L1 2379 2411 -3735 2499 60 0 13 chr12 948216 948518 -142837937 + AluY SINE Alu 1 298 -13 2391 224 70 19 chr12 948518 949268 -142837187 + L1M4 LINE L1 2411 3204 -2942 1596 141 0 20 chr12 949281 949529 -142836926 + AluJb SINE Alu 16 258 -54 527 160 0 84 chr12 949533 949629 -142836826 + AluJb SINE Alu 190 274 -38 216 0 0 0 chr12 949629 949653 -142836802 + (AGATG)n Simple_repeat Simple_repeat 5 28 0 527 160 0 84 chr12 949653 949687 -142836768 + AluJb SINE Alu 274 309 -3 3187 146 32 53 chr12 949688 949765 -142836690 + L1MB2 LINE L1 5319 5396 -775 2288 103 3 0 chr12 949765 950057 -142836398 + AluSx SINE Alu 1 293 -19 3187 146 32 53 chr12 950057 950643 -142835812 + L1MB2 LINE L1 5396 5968 -203 515 183 77 0 chr12 950651 950755 -142835700 + FLAM_C SINE Alu 22 133 -10 1879 139 0 80 chr12 950760 951099 -142835356 - AluSx SINE Alu 0 312 1 250 153 0 0 chr12 951118 951174 -142835281 + FAM SINE Alu 126 169 -6 1313 168 30 99 chr12 951202 951535 -142834920 + AluJo SINE Alu 3 312 0 704 176 204 0 chr12 951535 951711 -142834744 + L1MB2 LINE L1 5960 6171 0 343 147 18 110 chr12 951705 951717 -142834738 + L1M4 LINE L1 3684 3696 -2450 * 2133 105 13 10 chr12 951717 952022 -142834433 + AluSx SINE Alu 1 306 -6 343 147 18 110 chr12 952022 952069 -142834386 + L1M4 LINE L1 3696 3731 -2415 2351 72 3 7 chr12 952069 952360 -142834095 + AluSg SINE Alu 1 290 -20 343 147 18 110 chr12 952360 952408 -142834047 + L1M4 LINE L1 3731 3782 -2364 2513 60 0 0 chr12 952888 953190 -142833265 - AluY SINE Alu -9 302 1 312 241 37 37 chr12 953588 953696 -142832759 - L2 LINE L2 -3 3310 3203 2222 159 56 31 chr12 953962 954151 -142832304 + MSTB LTR MaLR 2 185 -241 1844 153 0 34 chr12 954151 954472 -142831983 + AluJo SINE Alu 1 310 -2 2222 159 56 31 chr12 954472 954696 -142831759 + MSTB LTR MaLR 185 425 -1 233 266 91 106 chr12 955360 955525 -142830930 + Charlie2 DNA MER1_type 117 280 -2502 2303 102 3 0 chr12 955525 955819 -142830636 + AluSx SINE Alu 1 295 -17 233 266 91 106 chr12 955819 955852 -142830603 + Charlie2 DNA MER1_type 280 312 -2470 2149 194 47 118 chr12 955868 956170 -142830285 + Charlie2 DNA MER1_type 1872 2194 -668 2332 82 0 16 chr12 956170 956473 -142829982 + AluSp SINE Alu 1 298 -15 2149 194 47 118 chr12 956473 956853 -142829602 + Charlie2 DNA MER1_type 2194 2479 -383 1668 154 0 4 chr12 956853 957106 -142829349 - AluJo SINE Alu -60 252 1 2149 194 47 118 chr12 957106 957311 -142829144 + Charlie2 DNA MER1_type 2479 2697 -165 379 209 338 14 chr12 957311 957459 -142828996 - MER6B DNA MER2_type 0 210 15 * 736 185 39 22 chr12 957448 957626 -142828829 + Charlie2 DNA MER1_type 2680 2860 -2 841 117 0 17 chr12 958209 958329 -142828126 + FRAM SINE Alu 37 154 -22 2093 128 0 13 chr12 958625 958931 -142827524 + AluJb SINE Alu 1 302 -10 432 126 207 0 chr12 959339 959426 -142827029 - Charlie1 DNA MER1_type -33 2728 2624 * 880 231 60 5 chr12 959425 959624 -142826831 - Charlie1 DNA MER1_type -2551 210 1 1028 85 8 0 chr12 960017 960147 -142826308 + AluSg SINE Alu 1 131 -179 2309 105 0 0 chr12 960155 960450 -142826005 + AluSx SINE Alu 3 297 -15 2255 96 7 3 chr12 961117 961418 -142825037 + AluY SINE Alu 1 302 -9 1005 183 177 19 chr12 961678 961780 -142824675 + MER46B DNA MER2_type 2 87 -2644 1773 145 69 7 chr12 961780 962069 -142824386 + AluJo SINE Alu 1 307 -5 1005 183 177 19 chr12 962069 962125 -142824330 + MER46B DNA MER2_type 87 133 -2598 2291 91 20 0 chr12 962125 962422 -142824033 + AluSx SINE Alu 1 303 -9 1005 183 177 19 chr12 962422 962573 -142823882 + MER46B DNA MER2_type 133 236 0 884 129 43 0 chr12 962581 962721 -142823734 + L1MA9 LINE L1 6162 6307 -5 2226 111 0 7 chr12 962771 963060 -142823395 + AluSx SINE Alu 1 287 -25 190 176 0 0 chr12 963286 963320 -142823135 + MER5A DNA MER1_type 21 54 -135 1233 167 17 25 chr12 963322 963562 -142822893 - AluJo SINE Alu -11 301 64 2401 91 0 0 chr12 964148 964446 -142822009 + AluSg SINE Alu 1 298 -12 1276 119 11 0 chr12 964446 964622 -142821833 + AluSg/x SINE Alu 134 311 -1 680 188 100 109 chr12 964922 965151 -142821304 + MIR SINE MIR 21 247 -15 237 311 40 0 chr12 965182 965256 -142821199 - L2 LINE L2 -5 3308 3232 1302 163 111 12 chr12 965260 965341 -142821114 + AluJo SINE Alu 29 101 -211 2334 87 0 3 chr12 965341 965639 -142820816 + AluSg SINE Alu 1 297 -13 1302 163 111 12 chr12 965639 965809 -142820646 + AluJo SINE Alu 101 305 -7 947 277 83 75 chr12 965820 966545 -142819910 - L2 LINE L2 -681 2633 1903 2092 95 9 54 chr12 966613 966928 -142819527 - AluY SINE Alu -10 301 1 1135 158 0 12 chr12 966962 967133 -142819322 + FAM SINE Alu 1 169 -6 1030 180 40 40 chr12 967459 967659 -142818796 - AluJo SINE Alu -25 287 88 274 367 109 9 chr12 967662 967891 -142818564 + L3 LINE CR1 255 506 -1071 180 282 56 28 chr12 967945 968016 -142818439 + L3 LINE CR1 502 574 -1003 700 339 42 44 chr12 968033 968490 -142817965 - L2 LINE L2 -2595 719 264 213 290 171 38 chr12 968490 968783 -142817672 + L2 LINE L2 1635 1966 -1348 1063 255 199 8 chr12 968783 969264 -142817191 - MLT1F1 LTR MaLR 0 567 1 409 339 189 13 chr12 969264 969380 -142817075 + L2 LINE L2 1962 2056 -1258 2472 92 0 0 chr12 969380 969686 -142816769 - AluSx SINE Alu -6 306 1 409 339 189 13 chr12 969686 970020 -142816435 + L2 LINE L2 2056 2491 -823 2164 81 63 0 chr12 970136 970421 -142816034 - AluSx SINE Alu -9 303 1 221 262 0 0 chr12 970423 970465 -142815990 + L3 LINE CR1 1528 1569 -8 2092 137 0 3 chr12 970729 971029 -142815426 + AluSx SINE Alu 1 299 -13 1516 125 10 0 chr12 971091 971299 -142815156 + AluSc SINE Alu 83 292 -17 21 0 0 0 chr12 971418 971439 -142815016 + AT_rich Low_complexity Low_complexity 1 21 0 2011 94 62 0 chr12 971440 971716 -142814739 - AluSx SINE Alu -8 304 12 791 247 0 18 chr12 971716 971882 -142814573 - AluJo SINE Alu -148 164 2 2101 212 84 29 chr12 972134 972379 -142814076 - L1ME3A LINE L1 -219 5951 5721 2160 127 0 3 chr12 972379 972687 -142813768 - AluSx SINE Alu -5 307 1 2036 136 6 40 chr12 972689 973012 -142813443 - AluJb SINE Alu 0 312 1 2101 212 84 29 chr12 973012 973479 -142812976 - L1ME3A LINE L1 -449 5721 5197 996 116 0 20 chr12 973494 973640 -142812815 + FLAM_C SINE Alu 1 143 0 1101 265 119 13 chr12 973659 974195 -142812260 - L1ME3A LINE L1 -1526 4620 4028 2381 210 27 10 chr12 974195 974676 -142811779 - REP3 LTR ERV 0 562 74 332 272 124 18 chr12 974708 974877 -142811578 - L1ME3A LINE L1 -2114 4032 3846 2378 104 0 0 chr12 974921 975230 -142811225 - AluSg SINE Alu -1 309 1 387 0 0 0 chr12 975332 975375 -142811080 + (TG)n Simple_repeat Simple_repeat 2 44 0 1684 155 42 0 chr12 975701 975966 -142810489 - AluJb SINE Alu -36 276 1 22 0 0 0 chr12 976231 976253 -142810202 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr12 976414 976451 -142810004 + AT_rich Low_complexity Low_complexity 1 37 0 2408 78 3 0 chr12 976487 976782 -142809673 - AluSx SINE Alu -16 296 1 1004 199 130 4 chr12 976795 976926 -142809529 - AluJo SINE Alu -24 288 175 1325 200 51 44 chr12 976926 977221 -142809234 - AluJb SINE Alu -15 297 1 1004 199 130 4 chr12 977221 977320 -142809135 - AluJo SINE Alu -137 175 29 246 86 21 75 chr12 977451 977544 -142808911 + (TA)n Simple_repeat Simple_repeat 2 89 0 361 303 21 28 chr12 977701 977843 -142808612 - L2 LINE L2 -476 2838 2698 480 100 0 0 chr12 977986 978066 -142808389 + (TC)n Simple_repeat Simple_repeat 1 80 0 261 0 0 0 chr12 978066 978095 -142808360 + (TG)n Simple_repeat Simple_repeat 2 30 0 513 211 0 37 chr12 978189 978298 -142808157 - MER3 DNA MER1_type -2 207 103 438 233 78 0 chr12 978401 978504 -142807951 - MER3 DNA MER1_type -98 111 1 1174 153 74 114 chr12 978799 978969 -142807486 - Charlie5 DNA MER1_type -1 2623 2448 1016 90 0 15 chr12 978969 979102 -142807353 - FLAM_C SINE Alu -2 131 1 1174 153 74 114 chr12 979102 979336 -142807119 - Charlie5 DNA MER1_type -176 2448 2235 621 159 32 56 chr12 979339 979465 -142806990 - Charlie5 DNA MER1_type -2489 123 1 1987 113 0 7 chr12 979703 979978 -142806477 - AluSx SINE Alu -15 297 25 236 268 99 0 chr12 980239 980310 -142806145 + MER117 DNA MER1_type 15 92 -105 1783 148 19 42 chr12 980385 980695 -142805760 - AluJb SINE Alu -9 303 1 1837 145 13 43 chr12 980841 981144 -142805311 + AluSx SINE Alu 1 294 -18 2051 92 60 0 chr12 981661 981943 -142804512 - AluSc SINE Alu -10 299 1 237 143 54 54 chr12 981994 982050 -142804405 - MER46C DNA MER2_type -46 292 237 222 116 0 0 chr12 982908 982951 -142803504 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 1282 180 78 35 chr12 982953 983208 -142803247 - AluJo SINE Alu -44 268 3 1922 165 0 0 chr12 983362 983665 -142802790 - AluSx SINE Alu -9 303 1 2236 126 7 0 chr12 983943 984253 -142802202 - AluSx SINE Alu 0 312 1 1852 150 41 0 chr12 984255 984548 -142801907 - AluSx SINE Alu -7 305 1 497 233 89 47 chr12 984594 984830 -142801625 - L1MC/D LINE L1 -1989 5819 5574 2213 109 0 25 chr12 985820 986140 -142800315 - AluSx SINE Alu 0 312 1 2322 109 0 0 chr12 986184 986486 -142799969 - AluSx SINE Alu -10 302 1 2235 112 0 3 chr12 986685 986988 -142799467 - AluSx SINE Alu -10 302 1 2075 104 13 41 chr12 987388 987704 -142798751 - AluSx SINE Alu -5 307 1 326 347 132 12 chr12 987909 988314 -142798141 - L2 LINE L2 -14 3258 2773 1728 180 0 3 chr12 988325 988614 -142797841 - AluJb SINE Alu -24 288 1 962 213 53 9 chr12 988615 988840 -142797615 - Charlie1 DNA MER1_type -2522 239 5 1467 159 3 123 chr12 988903 989243 -142797212 - AluJo SINE Alu -13 299 1 1776 197 185 25 chr12 989308 989364 -142797091 - MLT1F1 LTR MaLR -8 559 513 2100 131 0 0 chr12 989364 989672 -142796783 + AluSx SINE Alu 1 308 0 1776 197 185 25 chr12 989672 990096 -142796359 - MLT1F1 LTR MaLR -54 513 1 2342 91 3 0 chr12 990398 990694 -142795761 - AluSg1 SINE Alu -12 297 1 1650 174 13 29 chr12 990957 991090 -142795365 + AluJb SINE Alu 1 135 -177 2504 50 0 7 chr12 991090 991388 -142795067 + AluY SINE Alu 1 296 -15 207 0 0 0 chr12 991391 991414 -142795041 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1650 174 13 29 chr12 991414 991587 -142794868 + AluJb SINE Alu 137 306 -6 2327 71 51 0 chr12 992345 992641 -142793814 - AluY SINE Alu 0 311 1 881 205 49 0 chr12 993020 993225 -142793230 - Charlie1 DNA MER1_type 0 2761 2547 2204 106 7 3 chr12 993241 993542 -142792913 - AluSq SINE Alu -11 302 1 1149 130 0 0 chr12 993923 994084 -142792371 - AluSx SINE Alu -151 161 1 2039 105 0 7 chr12 994095 994372 -142792083 - AluY SINE Alu -36 275 1 2068 120 33 0 chr12 994374 994673 -142791782 - AluSq SINE Alu -4 309 1 25 0 0 0 chr12 994676 994701 -142791754 + AT_rich Low_complexity Low_complexity 1 25 0 2280 113 0 3 chr12 995069 995378 -142791077 - AluSg SINE Alu -2 308 1 758 271 123 39 chr12 995515 995873 -142790582 + MER20B DNA MER1_type 44 431 -352 944 183 74 26 chr12 995915 996144 -142790311 + MER20B DNA MER1_type 544 783 0 420 306 50 6 chr12 996163 996323 -142790132 + MIR3 SINE MIR 37 203 -5 189 310 55 35 chr12 996502 996647 -142789808 + MIR SINE MIR 106 253 -9 22 0 0 0 chr12 997173 997195 -142789260 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 95 14 chr12 997543 997690 -142788765 - MIR SINE MIR -38 224 66 22 35 0 0 chr12 997767 997796 -142788659 + AT_rich Low_complexity Low_complexity 1 29 0 1172 171 101 19 chr12 998398 998655 -142787800 + MER58B DNA MER1_type 53 330 -11 663 258 154 0 chr12 998686 998907 -142787548 - MIR SINE MIR 0 262 8 848 156 10 116 chr12 1001390 1001589 -142784866 - MER5B DNA MER1_type 0 178 1 253 229 0 16 chr12 1001589 1001643 -142784812 - MER117 DNA MER1_type -139 58 4 2377 71 34 0 chr12 1001783 1002078 -142784377 - AluSq SINE Alu -8 305 1 383 229 95 17 chr12 1002471 1002584 -142783871 - MER5A DNA MER1_type -14 164 43 2049 81 0 4 chr12 1002788 1003049 -142783406 + AluSc SINE Alu 30 289 -20 532 261 75 25 chr12 1003182 1003343 -142783112 - MER5B DNA MER1_type -3 175 7 1601 160 0 97 chr12 1003443 1003774 -142782681 + AluJb SINE Alu 1 299 -3 1042 144 86 6 chr12 1004104 1004278 -142782177 - MER5A DNA MER1_type 0 189 2 2245 108 0 0 chr12 1004724 1005021 -142781434 + AluSq SINE Alu 1 297 -16 222 270 0 32 chr12 1006759 1006822 -142779633 - L2 LINE L2 -2 3311 3251 338 184 132 0 chr12 1007007 1007083 -142779372 + FRAM SINE Alu 56 141 -25 216 0 0 0 chr12 1007088 1007112 -142779343 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2132 139 7 0 chr12 1007206 1007516 -142778939 - AluSx SINE Alu 0 312 1 398 271 177 6 chr12 1007712 1007893 -142778562 + MIR SINE MIR 8 219 -43 989 96 0 22 chr12 1007898 1008061 -142778394 + FLAM_C SINE Alu 1 160 0 21 0 0 0 chr12 1008108 1008129 -142778326 + AT_rich Low_complexity Low_complexity 1 21 0 2156 179 36 116 chr12 1008327 1008992 -142777463 - LTR9 LTR ERV1 0 612 1 1699 149 64 14 chr12 1009166 1009462 -142776993 - AluSx SINE Alu -1 311 1 2257 117 0 0 chr12 1009622 1009930 -142776525 - AluSc SINE Alu -1 308 1 9138 141 9 96 chr12 1010000 1010826 -142775629 - L1M LINE L1 -837 5309 4413 829 186 0 14 chr12 1010826 1010971 -142775484 - FRAM SINE Alu -12 164 22 9138 141 9 96 chr12 1010971 1012081 -142774374 - L1M LINE L1 -1733 4413 3444 2408 70 6 70 chr12 1012081 1012212 -142774243 - THE1A LTR MaLR 0 355 217 3292 43 0 0 chr12 1012212 1012584 -142773871 - L1PA3 LINE L1 0 6155 5784 2408 70 6 70 chr12 1012584 1012761 -142773694 - THE1A LTR MaLR -138 217 70 2447 60 3 10 chr12 1012761 1013063 -142773392 - AluY SINE Alu -11 300 1 2408 70 6 70 chr12 1013063 1013108 -142773347 - THE1A LTR MaLR -285 70 24 1106 150 123 0 chr12 1013124 1013344 -142773111 - L1 LINE L1 -2698 4150 3904 1695 164 3 24 chr12 1013351 1013644 -142772811 + AluSx SINE Alu 1 287 -25 261 246 0 0 chr12 1013738 1013799 -142772656 + CT-rich Low_complexity Low_complexity 2 62 0 * 968 192 40 1 chr12 1013780 1014006 -142772449 - L1 LINE L1 -2963 3885 3653 2377 79 26 0 chr12 1014015 1014318 -142772137 - AluY SINE Alu 0 311 1 817 138 0 48 chr12 1014318 1014453 -142772002 - FLAM_C SINE Alu -177 135 6 2737 204 70 5 chr12 1014460 1015103 -142771352 - L1 LINE L1 -3186 3662 2978 1178 121 0 29 chr12 1015103 1015277 -142771178 - AluSq SINE Alu -16 297 129 210 91 0 0 chr12 1015277 1015310 -142771145 + (TATG)n Simple_repeat Simple_repeat 2 34 0 2033 128 0 3 chr12 1015314 1015602 -142770853 - AluSx SINE Alu -25 287 1 4511 152 54 151 chr12 1015603 1016261 -142770194 - L1 LINE L1 -3862 2986 2265 687 176 37 7 chr12 1016261 1016397 -142770058 - FAM SINE Alu -11 174 35 4511 152 54 151 chr12 1016397 1016447 -142770008 - L1 LINE L1 -4583 2265 2212 1452 187 28 21 chr12 1016447 1016731 -142769724 - AluJo SINE Alu -24 288 3 4511 152 54 151 chr12 1016731 1017029 -142769426 - L1 LINE L1 -4636 2212 1886 2476 99 0 0 chr12 1017029 1017341 -142769114 - AluSx SINE Alu 0 312 1 4511 152 54 151 chr12 1017341 1017521 -142768934 - L1 LINE L1 -4962 1886 1845 372 22 0 0 chr12 1017521 1017566 -142768889 + (TG)n Simple_repeat Simple_repeat 2 46 0 4511 152 54 151 chr12 1017566 1017848 -142768607 - L1 LINE L1 -5003 1845 1537 1963 194 11 3 chr12 1017848 1018224 -142768231 + L1MB5 LINE L1 5788 6166 -8 2319 110 0 0 chr12 1018595 1018895 -142767560 + AluSx SINE Alu 1 300 -12 1158 161 0 0 chr12 1018980 1019148 -142767307 - AluJo SINE Alu -144 168 1 2380 86 7 0 chr12 1019967 1020269 -142766186 - AluSg SINE Alu -5 305 2 290 286 51 51 chr12 1021544 1021631 -142764824 + L1MB8 LINE L1 5710 5796 -382 998 232 100 16 chr12 1021631 1021941 -142764514 - MER46C DNA MER2_type 0 338 3 290 286 51 51 chr12 1021941 1022108 -142764347 + L1MB8 LINE L1 5795 5964 -214 1781 153 58 7 chr12 1022331 1022626 -142763829 - AluJo SINE Alu -2 310 1 242 239 53 35 chr12 1022724 1022743 -142763712 - L1MA10 LINE L1 -1 6333 6315 2631 185 98 102 chr12 1022743 1022844 -142763611 - L1ME2 LINE L1 -10 6154 6054 238 128 0 0 chr12 1022844 1022883 -142763572 - MER3 DNA MER1_type -160 49 11 2631 185 98 102 chr12 1022883 1023790 -142762665 - L1ME2 LINE L1 -110 6054 5129 2332 107 0 0 chr12 1023859 1024159 -142762296 + AluSx SINE Alu 1 300 -12 2112 130 0 0 chr12 1024734 1025033 -142761422 - AluSx SINE Alu -13 299 1 694 126 0 0 chr12 1025061 1025156 -142761299 + AluY SINE Alu 2 96 -222 207 162 0 0 chr12 1025279 1025316 -142761139 + G-rich Low_complexity Low_complexity 2 38 0 2123 120 23 0 chr12 1025322 1025623 -142760832 + AluSx SINE Alu 3 310 -2 560 185 9 9 chr12 1025909 1026017 -142760438 + MLT1C LTR MaLR 360 467 0 412 298 129 28 chr12 1026110 1026629 -142759826 - L1ME LINE L1 -442 5720 5152 2143 109 0 7 chr12 1026641 1026925 -142759530 + AluSx SINE Alu 1 282 -30 359 288 61 102 chr12 1027664 1027754 -142758701 + MLT1L LTR MaLR 1 93 -522 2264 111 3 3 chr12 1027754 1028061 -142758394 - AluSg SINE Alu -1 309 3 1667 83 0 9 chr12 1028064 1028280 -142758175 - AluSg/x SINE Alu -6 306 93 359 288 61 102 chr12 1028280 1028449 -142758006 + MLT1L LTR MaLR 95 253 -362 627 245 43 0 chr12 1028580 1028719 -142757736 + MER45A DNA AcHobo 34 178 0 295 295 76 0 chr12 1028736 1028841 -142757614 + MLT1L LTR MaLR 493 605 -10 2299 95 7 3 chr12 1028842 1029138 -142757317 - AluSq SINE Alu -16 297 1 2461 82 0 25 chr12 1029467 1029785 -142756670 + AluSq SINE Alu 1 310 -3 1925 157 0 13 chr12 1029799 1030111 -142756344 + AluJb SINE Alu 5 312 0 565 240 84 71 chr12 1030206 1030508 -142755947 - MLT1G1 LTR MaLR -64 531 146 2276 102 0 0 chr12 1030508 1030803 -142755652 - AluSq SINE Alu -14 299 5 565 240 84 71 chr12 1030803 1030951 -142755504 - MLT1G1 LTR MaLR -449 146 1 362 297 31 0 chr12 1031420 1031548 -142754907 - MIR SINE MIR -45 217 86 397 298 18 0 chr12 1031619 1031733 -142754722 - L2 LINE L2 -1 3312 3197 1384 185 52 55 chr12 1031865 1032232 -142754223 - MER93b LTR ERV1 -7 366 1 190 219 0 0 chr12 1032234 1032275 -142754180 - L2 LINE L2 -320 2952 2912 1236 281 113 71 chr12 1032417 1032785 -142753670 - L2 LINE L2 -573 2741 2390 1578 150 29 33 chr12 1032785 1033058 -142753397 - AluJo SINE Alu -40 272 1 1236 281 113 71 chr12 1033058 1033327 -142753128 - L2 LINE L2 -924 2390 2134 2425 64 27 0 chr12 1033327 1033624 -142752831 + AluSx SINE Alu 1 305 -7 1236 281 113 71 chr12 1033624 1033661 -142752794 - L2 LINE L2 -1180 2134 2100 1388 202 114 52 chr12 1033661 1033867 -142752588 + MLT1C LTR MaLR 1 193 -274 1828 167 0 16 chr12 1033867 1034172 -142752283 + AluSx SINE Alu 1 300 -12 1388 202 114 52 chr12 1034172 1034405 -142752050 + MLT1C LTR MaLR 193 467 0 1236 281 113 71 chr12 1034405 1034560 -142751895 - L2 LINE L2 -1214 2100 1875 2451 64 3 26 chr12 1034626 1034938 -142751517 - AluY SINE Alu -6 305 1 264 59 0 0 chr12 1034985 1035019 -142751436 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1328 181 3 122 chr12 1035022 1035342 -142751113 - AluJb SINE Alu -19 283 2 548 251 54 35 chr12 1035591 1035794 -142750661 - L2 LINE L2 -2 3311 3105 26 74 0 0 chr12 1035917 1035971 -142750484 + AT_rich Low_complexity Low_complexity 1 54 0 711 241 140 26 chr12 1036116 1036577 -142749878 - L2 LINE L2 -190 3123 2629 1852 131 0 0 chr12 1036578 1036830 -142749625 + AluSx SINE Alu 2 253 -59 1467 196 11 0 chr12 1036901 1037167 -142749288 - AluJo SINE Alu -43 269 1 206 121 0 0 chr12 1037239 1037272 -142749183 + (CCTG)n Simple_repeat Simple_repeat 2 34 0 2234 94 3 0 chr12 1037280 1037568 -142748887 - AluSg SINE Alu -21 289 1 497 206 142 179 chr12 1037794 1037985 -142748470 + MLT1J LTR MaLR 12 209 -302 2013 138 3 3 chr12 1037985 1038275 -142748180 - AluSg SINE Alu -20 290 1 1652 149 46 11 chr12 1038276 1038558 -142747897 - AluJo SINE Alu -20 292 1 497 206 142 179 chr12 1038558 1038849 -142747606 + MLT1J LTR MaLR 208 478 -33 213 271 51 0 chr12 1038988 1039047 -142747408 - L2 LINE L2 -53 3219 3158 2093 141 0 10 chr12 1039390 1039688 -142746767 + AluSx SINE Alu 3 297 -15 839 179 28 0 chr12 1039920 1040065 -142746390 - AluJb SINE Alu -32 280 132 733 176 0 0 chr12 1040079 1040204 -142746251 + AluSc SINE Alu 133 257 -52 414 160 27 0 chr12 1040199 1040274 -142746181 - BC200 scRNA scRNA -123 77 1 * 349 221 0 32 chr12 1040274 1040369 -142746086 - L1ME3A LINE L1 -230 5940 5849 2735 235 20 32 chr12 1040382 1041064 -142745391 + L1M4 LINE L1 9 682 -5860 437 248 111 0 chr12 1041069 1041186 -142745269 + L2 LINE L2 3183 3312 -1 2068 139 21 6 chr12 1041216 1041553 -142744902 - MER2 DNA MER2_type -1 343 2 22 80 0 0 chr12 1041698 1041748 -142744707 + AT_rich Low_complexity Low_complexity 1 50 0 2076 117 3 20 chr12 1041796 1042096 -142744359 + AluJo SINE Alu 1 295 -17 2101 111 6 38 chr12 1042318 1042633 -142743822 + AluSx SINE Alu 1 305 -7 27 29 0 0 chr12 1043848 1043882 -142742573 + AT_rich Low_complexity Low_complexity 1 34 0 2196 39 8 4 chr12 1044047 1044306 -142742149 - AluY SINE Alu -18 293 34 403 234 145 69 chr12 1044424 1044714 -142741741 - L2 LINE L2 0 3313 3002 2411 89 3 0 chr12 1044917 1045219 -142741236 - AluSq SINE Alu -10 303 1 1156 117 25 0 chr12 1045221 1045383 -142741072 - AluSg/x SINE Alu -6 304 139 380 64 0 0 chr12 1045421 1045468 -142740987 - MLT1B LTR MaLR 0 390 344 399 107 36 0 chr12 1045476 1045532 -142740923 - MLT1C LTR MaLR -409 58 1 1284 181 17 181 chr12 1045533 1045673 -142740782 - MLT1C-int LTR MaLR -1 1370 1209 1813 167 0 7 chr12 1045673 1045961 -142740494 + AluSx SINE Alu 1 286 -26 1284 181 17 181 chr12 1045961 1046229 -142740226 - MLT1C-int LTR MaLR -162 1209 1029 1108 123 0 25 chr12 1046232 1046434 -142740021 + AluSg/x SINE Alu 134 331 0 371 313 0 18 chr12 1046434 1046577 -142739878 - MLT1B-int LTR MaLR -334 1037 956 286 337 0 0 chr12 1046652 1046753 -142739702 - MLT1B-int LTR MaLR -958 777 677 1591 196 53 4 chr12 1046809 1047278 -142739177 - MLT1B-int LTR MaLR -484 887 238 951 117 5 143 chr12 1047281 1047477 -142738978 - AluJb SINE Alu -10 302 134 2152 131 0 0 chr12 1047477 1047774 -142738681 - AluSx SINE Alu -15 297 1 644 197 8 8 chr12 1047774 1047901 -142738554 - MLT1B-int LTR MaLR -1244 127 1 1449 193 111 14 chr12 1047904 1048035 -142738420 - MLT1B LTR MaLR -3 387 270 2346 94 7 10 chr12 1048035 1048344 -142738111 - AluSq SINE Alu -5 308 1 1449 193 111 14 chr12 1048344 1048565 -142737890 - MLT1B LTR MaLR -120 270 1 2054 148 15 38 chr12 1048595 1048825 -142737630 - L1MB3 LINE L1 -1 6182 5963 2154 107 3 13 chr12 1048825 1049124 -142737331 - AluSq SINE Alu -17 296 1 2054 148 15 38 chr12 1049124 1049285 -142737170 - L1MB3 LINE L1 -220 5963 5800 2506 61 0 3 chr12 1049293 1049589 -142736866 - AluY SINE Alu -16 295 1 1186 83 0 0 chr12 1049589 1049733 -142736722 - AluY SINE Alu -167 144 1 1230 175 22 11 chr12 1049737 1049770 -142736685 - L1MB3 LINE L1 -978 5168 5137 1665 191 0 13 chr12 1049770 1050069 -142736386 - AluJo SINE Alu -17 295 1 1230 175 22 11 chr12 1050069 1050303 -142736152 - L1MB3 LINE L1 -1009 5137 4898 180 0 0 0 chr12 1050303 1050323 -142736132 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1471 133 18 0 chr12 1050337 1050563 -142735892 - AluSq SINE Alu -83 230 1 2418 88 3 0 chr12 1050563 1050858 -142735597 - AluSp SINE Alu -17 296 1 818 169 0 0 chr12 1050870 1050988 -142735467 - FLAM_C SINE Alu -25 118 1 1743 164 10 10 chr12 1050991 1051284 -142735171 - AluJo SINE Alu -14 298 6 307 284 55 0 chr12 1051478 1051587 -142734868 - HAL1 LINE L1 -701 1806 1692 2266 98 13 13 chr12 1051588 1051893 -142734562 - AluSq SINE Alu -8 305 1 376 226 226 8 chr12 1051894 1052151 -142734304 - HAL1 LINE L1 -1010 1497 1185 1910 179 0 3 chr12 1052174 1052486 -142733969 - AluJb SINE Alu -1 311 1 354 136 0 34 chr12 1052489 1052548 -142733907 - Alu SINE Alu -2 300 244 338 163 0 0 chr12 1052545 1052594 -142733861 - Alu SINE Alu -254 49 1 * 933 241 0 19 chr12 1052597 1052813 -142733642 - AluJb SINE Alu -14 298 87 247 297 280 3 chr12 1052815 1053108 -142733347 - HAL1 LINE L1 -1357 1150 777 2323 170 28 35 chr12 1053108 1053568 -142732887 - MSTB2 LTR MaLR 0 457 1 289 329 13 0 chr12 1054037 1054116 -142732339 - HAL1 LINE L1 -2427 80 1 324 303 116 7 chr12 1054294 1054449 -142732006 - MIR3 SINE MIR -36 172 1 264 30 0 0 chr12 1055559 1055592 -142730863 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr12 1055690 1055718 -142730737 + GC_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr12 1055764 1055810 -142730645 + GC_rich Low_complexity Low_complexity 1 46 0 286 224 9 19 chr12 1055869 1055976 -142730479 + (CGG)n Simple_repeat Simple_repeat 2 107 0 1299 126 0 6 chr12 1058662 1058837 -142727618 - AluSx SINE Alu -138 174 1 1888 200 28 45 chr12 1058849 1059023 -142727432 + LTR40c LTR ERVL 35 210 -255 2445 48 31 0 chr12 1059023 1059312 -142727143 + AluY SINE Alu 1 298 -13 1888 200 28 45 chr12 1059312 1059562 -142726893 + LTR40c LTR ERVL 210 452 -13 718 205 0 0 chr12 1059695 1059812 -142726643 - FLAM_C SINE Alu -25 118 2 313 163 50 75 chr12 1059813 1059893 -142726562 + MER112 DNA MER1_type 38 115 -145 238 233 17 0 chr12 1059893 1059953 -142726502 - MLT1F1 LTR MaLR -7 560 500 342 271 0 0 chr12 1060039 1060109 -142726346 + MER112 DNA MER1_type 186 255 -5 2322 75 56 31 chr12 1060124 1060262 -142726193 + THE1C LTR MaLR 8 141 -234 1478 131 186 8 chr12 1060262 1060514 -142725941 - AluSg1 SINE Alu -12 297 1 2322 75 56 31 chr12 1060514 1060734 -142725721 + THE1C LTR MaLR 141 375 0 2037 140 3 0 chr12 1061695 1061995 -142724460 + AluJb SINE Alu 1 301 -11 180 152 0 0 chr12 1062426 1062459 -142723996 + A-rich Low_complexity Low_complexity 1 33 0 992 149 11 6 chr12 1062508 1062683 -142723772 - MER2 DNA MER2_type -137 208 33 409 312 48 16 chr12 1062938 1063249 -142723206 - L1M4 LINE L1 -861 5285 4965 2178 143 22 22 chr12 1063325 1063391 -142723064 - THE1B LTR MaLR 0 364 299 2088 130 10 0 chr12 1063391 1063692 -142722763 - AluSq SINE Alu -9 304 1 2178 143 22 22 chr12 1063692 1063989 -142722466 - THE1B LTR MaLR -64 300 1 583 231 124 0 chr12 1064182 1064368 -142722087 - MER46C DNA MER2_type -129 209 1 322 240 30 10 chr12 1064392 1064492 -142721963 - L1M4 LINE L1 -1429 4717 4616 322 281 104 50 chr12 1064551 1064975 -142721480 - L1M4 LINE L1 -1543 4603 4157 799 182 0 0 chr12 1064975 1065107 -142721348 - FLAM_C SINE Alu 0 133 2 229 243 0 29 chr12 1066393 1066463 -142719992 + T-rich Low_complexity Low_complexity 1 68 0 2081 98 35 0 chr12 1066669 1066956 -142719499 + AluSx SINE Alu 1 297 -15 2351 92 0 0 chr12 1067341 1067636 -142718819 - AluSx SINE Alu -9 303 9 1946 144 28 51 chr12 1067955 1068037 -142718418 + MER7A DNA MER2_type 2 84 -2954 1592 167 30 17 chr12 1068037 1068337 -142718118 + AluJb SINE Alu 1 304 -8 1946 144 28 51 chr12 1068337 1068609 -142717846 + MER7A DNA MER2_type 84 346 0 522 279 57 13 chr12 1069438 1069596 -142716859 + MER5A DNA MER1_type 1 165 -24 2202 96 3 20 chr12 1069641 1069943 -142716512 - AluSg SINE Alu -11 299 3 216 259 19 0 chr12 1070201 1070255 -142716200 + MER5A DNA MER1_type 135 189 0 2031 142 3 19 chr12 1070461 1070636 -142715819 - AluSx SINE Alu -6 306 137 2370 91 0 3 chr12 1070636 1070932 -142715523 - AluY SINE Alu -16 295 1 2031 142 3 19 chr12 1070932 1071067 -142715388 - AluSx SINE Alu -175 137 1 1084 131 12 0 chr12 1071067 1071227 -142715228 - AluSg/x SINE Alu -17 293 132 2276 94 10 3 chr12 1071227 1071526 -142714929 - AluSx SINE Alu -11 301 1 778 211 0 0 chr12 1071891 1072024 -142714431 + FLAM_A SINE Alu 1 133 0 26 30 0 0 chr12 1072024 1072057 -142714398 + AT_rich Low_complexity Low_complexity 1 33 0 2503 58 0 0 chr12 1073237 1073531 -142712924 + AluY SINE Alu 1 294 -17 2254 103 0 3 chr12 1073971 1074272 -142712183 - AluSq SINE Alu -13 300 1 300 240 217 16 chr12 1075106 1075235 -142711220 + L3 LINE CR1 1134 1288 -289 2350 71 0 7 chr12 1075359 1075656 -142710799 + AluY SINE Alu 1 295 -16 198 0 0 0 chr12 1075660 1075682 -142710773 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 446 269 38 19 chr12 1075682 1075842 -142710613 + AluJb SINE Alu 130 292 -20 891 79 67 79 chr12 1077304 1077482 -142708973 - Tigger2a DNA MER2_type -57 387 212 1912 118 0 4 chr12 1077485 1077748 -142708707 + AluSc SINE Alu 3 264 -45 1114 167 17 43 chr12 1077799 1078033 -142708422 - Tigger2a DNA MER2_type -206 228 1 2211 108 0 0 chr12 1078455 1078750 -142707705 - AluSg SINE Alu 0 310 16 410 332 79 8 chr12 1080608 1080861 -142705594 + L1MB1 LINE L1 5098 5368 -778 275 280 134 25 chr12 1081999 1082156 -142704299 + L1MB1 LINE L1 5575 5748 -2060 1899 155 71 3 chr12 1082196 1082550 -142703905 - L1MB3 LINE L1 -1 6182 5805 2178 78 3 0 chr12 1082563 1082857 -142703598 + THE1A LTR MaLR 1 295 -60 895 122 0 0 chr12 1082854 1082985 -142703470 + THE1A LTR MaLR 223 353 -2 * 405 304 40 16 chr12 1083049 1083174 -142703281 - MIR SINE MIR -61 147 20 477 224 91 91 chr12 1083608 1083713 -142702742 + MIR SINE MIR 53 157 -105 1071 179 52 9 chr12 1083713 1083942 -142702513 + L1MB1 LINE L1 5929 6167 -1 477 224 91 91 chr12 1083942 1084046 -142702409 + MIR SINE MIR 156 262 0 2096 111 4 0 chr12 1084095 1084398 -142702057 - AluSg SINE Alu 0 304 1 1012 70 39 0 chr12 1084398 1084526 -142701929 - AluSg SINE Alu -177 133 1 2234 114 3 10 chr12 1084558 1084864 -142701591 - AluSq SINE Alu -9 304 1 22 0 0 0 chr12 1086487 1086509 -142699946 + AT_rich Low_complexity Low_complexity 1 22 0 1712 149 0 55 chr12 1086745 1087054 -142699401 - AluJo SINE Alu 0 312 21 180 111 0 0 chr12 1087075 1087102 -142699353 + (TTG)n Simple_repeat Simple_repeat 1 27 0 186 133 0 0 chr12 1087544 1087574 -142698881 + (TTA)n Simple_repeat Simple_repeat 2 31 0 180 111 0 0 chr12 1089327 1089354 -142697101 + (TTA)n Simple_repeat Simple_repeat 2 28 0 588 95 0 0 chr12 1091540 1091624 -142694831 + (TTA)n Simple_repeat Simple_repeat 2 85 0 1970 108 41 0 chr12 1091627 1091896 -142694559 - AluSx SINE Alu -32 280 1 260 355 127 23 chr12 1092032 1092252 -142694203 - L2 LINE L2 -260 3053 2811 435 284 90 25 chr12 1092377 1092578 -142693877 - L2 LINE L2 -540 2774 2561 2399 77 0 0 chr12 1092706 1093004 -142693451 - AluSg SINE Alu -12 298 1 622 310 47 7 chr12 1093007 1093304 -142693151 + HsTC2 DNA Tc2 5 313 -1585 561 193 30 86 chr12 1093311 1093386 -142693069 + HsTC2 DNA Tc2 1707 1785 -113 1939 146 17 0 chr12 1093386 1093681 -142692774 + AluSx SINE Alu 1 300 -12 561 193 30 86 chr12 1093681 1093802 -142692653 + HsTC2 DNA Tc2 1785 1892 -6 510 157 0 0 chr12 1094572 1094693 -142691762 + (TA)n Simple_repeat Simple_repeat 1 121 0 2183 115 0 0 chr12 1094730 1095026 -142691429 - AluSx SINE Alu -16 296 1 2080 135 7 3 chr12 1095114 1095417 -142691038 - AluSx SINE Alu -8 304 1 190 210 49 99 chr12 1095450 1095531 -142690924 - L2 LINE L2 -1 3271 3195 1853 122 0 0 chr12 1095858 1096104 -142690351 + AluSx SINE Alu 4 249 -63 1850 158 17 7 chr12 1096638 1096935 -142689520 - AluJb SINE Alu -12 300 1 182 284 21 74 chr12 1097195 1097290 -142689165 - L2 LINE L2 0 3313 3224 304 312 39 44 chr12 1097408 1097613 -142688842 - L1ME3A LINE L1 -5 6165 5962 574 292 91 65 chr12 1097853 1098409 -142688046 - L1MEc LINE L1 -5485 911 326 2194 106 0 13 chr12 1098409 1098720 -142687735 - AluSx SINE Alu -3 309 3 574 292 91 65 chr12 1098720 1098974 -142687481 - L1MEc LINE L1 -6070 326 80 1783 289 116 42 chr12 1099002 1099881 -142686574 - L2 LINE L2 -550 2764 1821 29 0 0 0 chr12 1099895 1099924 -142686531 + AT_rich Low_complexity Low_complexity 1 29 0 183 80 0 0 chr12 1099932 1099957 -142686498 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 238 273 91 9 chr12 1100041 1100151 -142686304 + Charlie2 DNA MER1_type 94 212 -2570 2620 250 180 11 chr12 1100307 1100543 -142685912 - L2 LINE L2 -1 3312 3117 2389 90 0 6 chr12 1100543 1100855 -142685600 - AluSg SINE Alu 0 310 1 2620 250 180 11 chr12 1100855 1101819 -142684636 - L2 LINE L2 -196 3117 1888 642 304 37 72 chr12 1101957 1102440 -142684015 - LTR67 LTR ERVL -87 470 5 501 301 147 6 chr12 1102535 1102691 -142683764 + MER91A DNA MER1_type 19 196 0 198 236 64 91 chr12 1102871 1102981 -142683474 - L2 LINE L2 -1361 1953 1847 731 250 37 28 chr12 1103303 1103519 -142682936 - L2 LINE L2 -4 3309 3092 441 290 20 33 chr12 1103590 1103874 -142682581 - L1MC5 LINE L1 -1 8041 7668 1367 262 118 19 chr12 1103919 1104403 -142682052 - L2 LINE L2 -363 2951 2420 766 171 0 0 chr12 1104426 1104543 -142681912 - FLAM_C SINE Alu -24 119 3 268 242 81 0 chr12 1104543 1104642 -142681813 - L2 LINE L2 -950 2364 2258 255 184 0 0 chr12 1105764 1105813 -142680642 - Charlie1 DNA MER1_type 0 2761 2713 * 663 126 59 0 chr12 1105802 1105921 -142680534 - Charlie1 DNA MER1_type -865 1896 1771 2353 104 0 0 chr12 1106102 1106401 -142680054 + AluSq SINE Alu 1 299 -14 1978 202 99 8 chr12 1106690 1107175 -142679280 + MER82 DNA MER2_type 1 529 -124 2169 106 3 10 chr12 1107410 1107721 -142678734 + AluSp SINE Alu 5 313 0 2215 126 0 0 chr12 1107729 1108038 -142678417 + AluSx SINE Alu 3 311 -1 180 0 0 0 chr12 1108191 1108211 -142678244 + (A)n Simple_repeat Simple_repeat 1 20 0 1270 175 5 22 chr12 1108216 1108439 -142678016 - AluJo SINE Alu -30 282 64 923 291 84 29 chr12 1109091 1109133 -142677322 + LTR16C LTR ERVL 1 39 -452 2299 97 0 7 chr12 1109133 1109431 -142677024 - AluSx SINE Alu -16 296 1 923 291 84 29 chr12 1109431 1109804 -142676651 + LTR16C LTR ERVL 39 439 -52 903 221 120 73 chr12 1109833 1110106 -142676349 + L1MC4 LINE L1 7326 7624 -418 2062 140 3 3 chr12 1110106 1110413 -142676042 + AluSx SINE Alu 1 307 -5 903 221 120 73 chr12 1110413 1110523 -142675932 + L1MC4 LINE L1 7624 7727 -315 598 163 0 0 chr12 1110541 1110633 -142675822 - AluJb SINE Alu -86 226 135 359 288 93 49 chr12 1110636 1110758 -142675697 + L1MC4 LINE L1 7781 7917 -125 297 0 0 0 chr12 1110758 1110791 -142675664 + (TG)n Simple_repeat Simple_repeat 2 34 0 359 288 93 49 chr12 1110791 1110873 -142675582 + L1MC4 LINE L1 7917 7994 -48 1654 154 46 4 chr12 1110875 1111155 -142675300 - AluJo SINE Alu -20 292 1 2358 94 0 0 chr12 1111502 1111801 -142674654 + AluSg SINE Alu 3 301 -9 2157 68 0 54 chr12 1112022 1112345 -142674110 + AluSc SINE Alu 1 307 0 694 257 9 64 chr12 1112561 1112904 -142673551 + L1ME LINE L1 1182 1505 -4879 2303 219 85 22 chr12 1112935 1113029 -142673426 + L1ME LINE L1 4620 4707 -1691 2304 98 0 0 chr12 1113029 1113324 -142673131 - AluSp SINE Alu -18 295 1 2321 105 0 13 chr12 1113329 1113643 -142672812 - AluSq SINE Alu -3 310 1 2303 219 85 22 chr12 1113643 1114173 -142672282 + L1ME LINE L1 4710 5205 -1193 2283 98 0 3 chr12 1114173 1114468 -142671987 + AluSg SINE Alu 1 294 -16 2303 219 85 22 chr12 1114468 1114946 -142671509 + L1ME LINE L1 5205 5803 -595 1982 116 0 20 chr12 1115061 1115355 -142671100 - AluSx SINE Alu -24 288 1 446 277 85 66 chr12 1115359 1115630 -142670825 - L1M4 LINE L1 -867 5279 5004 1751 170 7 0 chr12 1115641 1115941 -142670514 + AluSx SINE Alu 2 303 -9 1478 158 37 30 chr12 1115947 1116245 -142670210 + AluJb SINE Alu 1 300 -12 180 0 0 0 chr12 1116315 1116335 -142670120 + (A)n Simple_repeat Simple_repeat 1 20 0 497 125 38 0 chr12 1116467 1116547 -142669908 - AluS SINE Alu -5 307 225 2305 90 0 0 chr12 1116775 1117074 -142669381 + AluSq SINE Alu 1 299 -14 1175 48 0 0 chr12 1117244 1117391 -142669064 + AluY SINE Alu 158 304 -7 1252 272 108 23 chr12 1117399 1117673 -142668782 - L2 LINE L2 -381 2933 2615 2411 57 0 0 chr12 1117673 1117971 -142668484 - AluY SINE Alu -13 298 1 1252 272 108 23 chr12 1117971 1118086 -142668369 - L2 LINE L2 -699 2615 2511 1933 132 0 3 chr12 1118086 1118381 -142668074 - AluJb SINE Alu -18 294 1 1048 174 23 5 chr12 1118382 1118600 -142667855 - AluJo SINE Alu -5 307 86 873 265 31 0 chr12 1118601 1118797 -142667658 - L2 LINE L2 -796 2518 2317 331 183 50 0 chr12 1118854 1118914 -142667541 + LTR16C LTR ERVL 55 117 -374 268 262 39 19 chr12 1119160 1119263 -142667192 + MLT1L LTR MaLR 507 611 -4 480 236 180 60 chr12 1119279 1119512 -142666943 - MIR SINE MIR 0 262 2 1590 124 93 31 chr12 1119532 1119823 -142666632 + MER44D DNA MER2_type 1 579 -30 818 239 63 43 chr12 1120231 1120532 -142665923 + L2 LINE L2 1717 2023 -1291 211 279 132 0 chr12 1120540 1120608 -142665847 + L2 LINE L2 2131 2207 -1107 1501 226 202 36 chr12 1120615 1120640 -142665815 + MLT1H1 LTR MaLR 1 21 -534 2191 93 0 7 chr12 1120640 1120931 -142665524 + AluSg SINE Alu 1 289 -21 1501 226 202 36 chr12 1120931 1121412 -142665043 + MLT1H1 LTR MaLR 21 555 0 340 242 126 11 chr12 1121412 1121507 -142664948 + L2 LINE L2 2209 2314 -1000 583 181 0 0 chr12 1121512 1121606 -142664849 - LTR16C LTR ERVL 0 491 398 * 1003 270 78 82 chr12 1121601 1122248 -142664207 - MER50 LTR ERV1 -23 711 1 995 250 49 27 chr12 1122248 1122611 -142663844 - LTR16C LTR ERVL -84 407 1 270 184 0 0 chr12 1122633 1122682 -142663773 - L1MC4 LINE L1 -472 7570 7522 426 218 30 20 chr12 1122692 1122793 -142663662 + LTR40a LTR ERVL 4 105 -414 1130 50 0 69 chr12 1122795 1122955 -142663500 - AluSg SINE Alu -161 149 1 310 286 163 0 chr12 1122986 1123084 -142663371 - L1MC4a LINE L1 -1480 6328 6215 1349 140 5 14 chr12 1123121 1123343 -142663112 + AluSx SINE Alu 1 220 -92 1015 80 29 14 chr12 1123343 1123481 -142662974 + AluSg/x SINE Alu 150 289 -21 389 70 18 0 chr12 1123482 1123539 -142662916 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1427 164 33 140 chr12 1123648 1123760 -142662695 + MLT1B LTR MaLR 1 123 -267 1840 147 7 3 chr12 1123760 1124059 -142662396 + AluSx SINE Alu 1 300 -12 1427 164 33 140 chr12 1124059 1124367 -142662088 + MLT1B LTR MaLR 123 376 -14 1916 70 0 0 chr12 1124368 1124609 -142661846 + AluY SINE Alu 1 241 -70 1255 128 5 5 chr12 1124609 1124804 -142661651 + AluSg/x SINE Alu 101 295 -17 778 233 0 0 chr12 1124841 1124987 -142661468 - MLT-int LTR MaLR -128 1607 1462 300 116 58 43 chr12 1125111 1125180 -142661275 + AluSp/q SINE Alu 221 290 -13 1224 111 6 6 chr12 1125214 1125395 -142661060 + AluSx SINE Alu 6 186 -126 2166 94 7 3 chr12 1125449 1125756 -142660699 + AluSq SINE Alu 3 310 -3 1480 166 150 17 chr12 1125898 1126259 -142660196 + L1MB7 LINE L1 5732 6140 -44 1361 125 167 0 chr12 1126260 1126500 -142659955 + AluSg SINE Alu 1 280 -30 1731 137 7 0 chr12 1126549 1126841 -142659614 - AluSx SINE Alu -18 294 1 462 168 0 56 chr12 1126893 1127000 -142659455 - AluJb SINE Alu -7 305 205 2274 60 0 3 chr12 1128132 1128430 -142658025 + AluY SINE Alu 1 297 -14 850 137 0 0 chr12 1128431 1128555 -142657900 - AluJo/FLAM SINE Alu -188 124 1 1019 96 10 96 chr12 1128556 1128765 -142657690 - L1MA7 LINE L1 -122 6169 5979 1022 79 0 0 chr12 1128768 1128894 -142657561 - AluSp SINE Alu -187 126 1 648 163 120 34 chr12 1128895 1128952 -142657503 - L1 LINE L1 -745 5401 5350 1441 180 7 40 chr12 1128952 1129252 -142657203 - AluJo SINE Alu -20 292 3 648 163 120 34 chr12 1129252 1129403 -142657052 - L1 LINE L1 -796 5350 5175 * 785 229 81 34 chr12 1129400 1129723 -142656732 - L1 LINE L1 -2848 3298 2961 1364 189 31 54 chr12 1129790 1130107 -142656348 - AluJo SINE Alu -2 310 1 808 161 0 0 chr12 1130118 1130242 -142656213 - FLAM_A SINE Alu -9 124 1 667 226 48 6 chr12 1130281 1130449 -142656006 + MLT1C LTR MaLR 1 175 -292 1748 138 17 17 chr12 1130453 1130744 -142655711 + AluSq SINE Alu 1 291 -22 254 130 0 19 chr12 1130744 1130798 -142655657 + (GGGAA)n Simple_repeat Simple_repeat 1 53 0 1788 109 4 4 chr12 1131047 1131304 -142655151 - AluSq SINE Alu -56 257 1 269 206 52 0 chr12 1131724 1131816 -142654639 + HsTC2 DNA Tc2 14 1835 -63 192 156 0 0 chr12 1131971 1132003 -142654452 - MIR SINE MIR -152 110 79 2492 34 3 0 chr12 1132029 1132324 -142654131 + AluY SINE Alu 1 296 -15 510 158 18 70 chr12 1132552 1132666 -142653789 + MER3 DNA MER1_type 38 145 -64 302 203 127 17 chr12 1133243 1133361 -142653094 - L1M4 LINE L1 -780 5366 5236 2168 84 0 20 chr12 1133564 1133863 -142652592 + AluSc SINE Alu 3 295 -14 1729 103 58 0 chr12 1133936 1134197 -142652258 + AluSx SINE Alu 11 286 -26 1444 140 17 92 chr12 1134229 1134430 -142652025 - Tigger3(Golem) DNA MER2_type -956 275 101 2007 98 11 0 chr12 1134430 1134706 -142651749 - AluSc SINE Alu -30 279 1 1444 140 17 92 chr12 1134706 1134796 -142651659 - Tigger3(Golem) DNA MER2_type -1130 101 6 1725 156 24 0 chr12 1134840 1135128 -142651327 - AluSg SINE Alu 0 310 16 2004 135 10 0 chr12 1136022 1136318 -142650137 - AluSq SINE Alu -14 299 1 497 125 38 0 chr12 1136546 1136626 -142649829 + AluS SINE Alu 225 307 -5 627 199 0 30 chr12 1189925 1190056 -142596399 + FLAM_C SINE Alu 1 127 -6 266 290 15 8 chr12 1190621 1190752 -142595703 - L1MEc LINE L1 -6224 172 41 30 0 0 0 chr12 1191053 1191083 -142595372 + AT_rich Low_complexity Low_complexity 1 30 0 549 362 72 29 chr12 1191134 1191413 -142595042 + L2 LINE L2 2982 3272 0 775 188 0 0 chr12 1191571 1191704 -142594751 + FLAM_C SINE Alu 1 133 0 2022 143 0 13 chr12 1192003 1192311 -142594144 + AluSx SINE Alu 1 304 -8 25 0 0 0 chr12 1193381 1193406 -142593049 + AT_rich Low_complexity Low_complexity 1 25 0 1542 185 36 26 chr12 1193805 1193929 -142592526 + AluJo SINE Alu 1 122 -190 2179 109 0 0 chr12 1193929 1194213 -142592242 + AluSg SINE Alu 1 284 -26 1542 185 36 26 chr12 1194213 1194396 -142592059 + AluJo SINE Alu 122 311 -1 21 36 0 0 chr12 1194792 1194820 -142591635 + AT_rich Low_complexity Low_complexity 1 28 0 2366 80 0 7 chr12 1194974 1195275 -142591180 - AluSg SINE Alu -2 308 10 742 186 16 0 chr12 1195275 1195404 -142591051 - AluJo/FLAM SINE Alu -170 132 2 25 65 0 0 chr12 1195881 1195927 -142590528 + AT_rich Low_complexity Low_complexity 1 46 0 1690 151 11 35 chr12 1196192 1196477 -142589978 + AluJo SINE Alu 22 299 -13 2125 99 57 0 chr12 1197339 1197621 -142588834 - AluSp SINE Alu -15 298 1 2060 118 11 3 chr12 1198025 1198312 -142588143 + AluSx SINE Alu 1 289 -23 270 0 0 0 chr12 1198854 1198884 -142587571 + (CA)n Simple_repeat Simple_repeat 1 30 0 220 291 0 18 chr12 1199259 1199314 -142587141 - L2 LINE L2 0 3272 3219 2815 16 0 0 chr12 1199331 1199642 -142586813 + AluYa5 SINE Alu 1 311 0 260 352 19 0 chr12 1199723 1199831 -142586624 - L2 LINE L2 -514 2800 2691 590 219 21 139 chr12 1200165 1200402 -142586053 - L2 LINE L2 -1 3312 3104 12794 123 36 70 chr12 1201265 1202393 -142584062 + Tigger1 DNA MER2_type 1 1166 -1252 902 229 0 0 chr12 1202393 1202559 -142583896 + FRAM SINE Alu 1 166 0 12794 123 36 70 chr12 1202559 1203303 -142583152 + Tigger1 DNA MER2_type 1166 1769 -649 2295 94 0 3 chr12 1203303 1203602 -142582853 + AluSq SINE Alu 1 298 -15 12794 123 36 70 chr12 1203602 1204231 -142582224 + Tigger1 DNA MER2_type 1769 2418 0 232 293 13 0 chr12 1205817 1205892 -142580563 - MIR SINE MIR -34 228 153 210 244 44 0 chr12 1205889 1205934 -142580521 - MIR SINE MIR -211 51 5 * 24 53 0 0 chr12 1206349 1206387 -142580068 + AT_rich Low_complexity Low_complexity 1 38 0 1688 211 7 0 chr12 1206652 1206950 -142579505 - AluJo SINE Alu -12 300 1 213 39 0 0 chr12 1207758 1207784 -142578671 + (A)n Simple_repeat Simple_repeat 1 26 0 221 325 112 0 chr12 1208067 1208162 -142578293 + MIR SINE MIR 75 190 -18 221 232 125 0 chr12 1208634 1208690 -142577765 - MER91C DNA MER1_type -44 96 34 247 333 41 20 chr12 1208823 1209018 -142577437 + L1ME4a LINE L1 5725 5923 -198 894 269 100 3 chr12 1209536 1209845 -142576610 - LTR16A LTR ERVL -6 444 106 2315 101 3 7 chr12 1210352 1210658 -142575797 + AluSq SINE Alu 1 305 -8 1602 195 7 13 chr12 1210715 1211013 -142575442 + AluJb SINE Alu 1 296 -16 2101 109 3 3 chr12 1211128 1211432 -142575023 + AluSc SINE Alu 5 308 -1 1171 169 12 4 chr12 1212408 1212657 -142573798 + L1M4 LINE L1 3811 4061 -2085 1967 139 50 36 chr12 1212658 1213017 -142573438 - THE1B LTR MaLR 0 364 1 661 125 133 0 chr12 1213017 1213145 -142573310 - THE1B-int LTR MaLR 0 1580 1436 * 870 201 115 0 chr12 1213127 1213336 -142573119 + L1MB7 LINE L1 5933 6165 -19 2311 46 0 87 chr12 1213506 1213829 -142572626 + AluY SINE Alu 2 296 -15 312 140 0 0 chr12 1214363 1214413 -142572042 + MLT1G LTR MaLR 13 62 -533 2267 64 7 0 chr12 1214498 1214906 -142571549 + AluY SINE Alu 1 410 0 327 256 97 67 chr12 1214907 1215102 -142571353 + MLT1G LTR MaLR 87 287 -303 2087 149 3 0 chr12 1215123 1215431 -142571024 + AluSx SINE Alu 1 309 -3 463 233 60 0 chr12 1215546 1215662 -142570793 + MLT1G LTR MaLR 457 579 -11 22 0 0 0 chr12 1216409 1216431 -142570024 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr12 1217223 1217258 -142569197 + AT_rich Low_complexity Low_complexity 1 35 0 859 149 0 8 chr12 1218242 1218376 -142568079 + FLAM_C SINE Alu 1 133 0 1652 130 103 4 chr12 1218419 1218681 -142567774 - AluSx SINE Alu -20 292 5 246 358 129 0 chr12 1218820 1219021 -142567434 + L3 LINE CR1 554 780 -797 217 283 0 0 chr12 1219250 1219310 -142567145 - MIR SINE MIR -111 151 92 189 295 16 16 chr12 1219361 1219422 -142567033 + L3 LINE CR1 826 886 -691 217 263 70 0 chr12 1219528 1219585 -142566870 + L3 LINE CR1 1250 1310 -267 2071 161 3 3 chr12 1219615 1219937 -142566518 + MER1B DNA MER1_type 1 322 -17 383 295 114 32 chr12 1220249 1220385 -142566070 + HAL1b LINE L1 522 645 -703 2194 81 3 69 chr12 1220385 1220717 -142565738 + AluSp SINE Alu 1 310 -3 383 295 114 32 chr12 1220717 1220861 -142565594 + HAL1b LINE L1 645 825 -523 22 35 0 0 chr12 1220921 1220950 -142565505 + AT_rich Low_complexity Low_complexity 1 29 0 261 297 226 13 chr12 1221151 1221306 -142565149 - L3 LINE CR1 -139 1438 1251 * 562 250 55 0 chr12 1221304 1221432 -142565023 + L2 LINE L2 1902 2036 -1278 230 311 0 0 chr12 1221607 1221681 -142564774 + L1P LINE L1 4887 4960 -1186 1195 191 4 27 chr12 1221786 1222042 -142564413 + AluJb SINE Alu 54 303 -9 330 307 77 29 chr12 1222133 1222466 -142563989 + L1M4 LINE L1 5174 5518 -660 1990 127 7 7 chr12 1222601 1222910 -142563545 + AluSg SINE Alu 1 309 0 26 30 0 0 chr12 1223033 1223066 -142563389 + AT_rich Low_complexity Low_complexity 1 33 0 34 0 0 0 chr12 1223241 1223275 -142563180 + AT_rich Low_complexity Low_complexity 1 34 0 2322 65 17 3 chr12 1223367 1223661 -142562794 + AluY SINE Alu 1 298 -13 2692 138 77 30 chr12 1223666 1223799 -142562656 - L1P5 LINE L1 -377 5777 5652 1840 142 36 26 chr12 1223799 1224102 -142562353 - AluSx SINE Alu -6 306 1 2692 138 77 30 chr12 1224102 1224752 -142561703 - L1P5 LINE L1 -502 5652 4962 252 0 0 0 chr12 1224755 1224783 -142561672 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 326 0 0 chr12 1224798 1224884 -142561571 - L1MC4 LINE L1 -1342 6700 6615 360 0 0 0 chr12 1224884 1224924 -142561531 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 1719 130 18 11 chr12 1224925 1225201 -142561254 + L1PB3 LINE L1 5783 6060 -94 2277 102 0 3 chr12 1226917 1227221 -142559234 - AluSq SINE Alu -10 303 1 2207 218 29 21 chr12 1228016 1228539 -142557916 - L1MC3 LINE L1 -1 7784 7258 22 0 0 0 chr12 1228630 1228652 -142557803 + AT_rich Low_complexity Low_complexity 1 22 0 1902 150 3 3 chr12 1229444 1229730 -142556725 + AluJb SINE Alu 6 291 -21 27 0 0 0 chr12 1229969 1229996 -142556459 + AT_rich Low_complexity Low_complexity 1 27 0 2151 111 0 0 chr12 1230236 1230524 -142555931 + AluSx SINE Alu 1 288 -24 24 0 0 0 chr12 1230524 1230548 -142555907 + AT_rich Low_complexity Low_complexity 1 24 0 914 136 11 87 chr12 1230762 1230946 -142555509 + THE1B LTR MaLR 195 364 0 6546 152 33 28 chr12 1231736 1231979 -142554476 + L1PB1 LINE L1 3863 4103 -2048 4348 43 2 6 chr12 1231979 1232517 -142553938 + L1PA4 LINE L1 5620 6155 0 6546 152 33 28 chr12 1232517 1233821 -142552634 + L1PB1 LINE L1 4103 5398 -753 2351 85 0 0 chr12 1233821 1234114 -142552341 + AluSx SINE Alu 1 293 -19 6546 152 33 28 chr12 1234114 1234473 -142551982 + L1PB1 LINE L1 5398 5753 -398 345 100 0 0 chr12 1234473 1234523 -142551932 + (TA)n Simple_repeat Simple_repeat 1 50 0 6546 152 33 28 chr12 1234523 1234879 -142551576 + L1PB1 LINE L1 5753 6150 -1 676 315 116 35 chr12 1235062 1235691 -142550764 + L1MC/D LINE L1 4151 4830 -1316 468 0 0 0 chr12 1235756 1235808 -142550647 + (CA)n Simple_repeat Simple_repeat 2 53 0 399 159 0 0 chr12 1235842 1235905 -142550550 + FLAM_A SINE Alu 37 99 -34 25 0 0 0 chr12 1235906 1235931 -142550524 + AT_rich Low_complexity Low_complexity 1 25 0 1848 139 0 17 chr12 1235939 1236227 -142550228 + AluSx SINE Alu 6 288 -24 1185 259 93 19 chr12 1236309 1236792 -142549663 + L1MC/D LINE L1 5276 5794 -2014 299 130 0 0 chr12 1237654 1237700 -142548755 - tRNA-Gln-CAG tRNA tRNA -29 46 1 472 197 228 0 chr12 1237710 1237837 -142548618 - MER5A DNA MER1_type -3 186 31 946 175 22 11 chr12 1238249 1238432 -142548023 - MER33 DNA MER1_type -138 186 2 1185 140 77 31 chr12 1238576 1238798 -142547657 + MER46A DNA MER2_type 1 232 -4 3055 171 11 11 chr12 1239524 1240074 -142546381 - MER44D DNA MER2_type 0 605 1 284 294 83 9 chr12 1240173 1240282 -142546173 - MIR SINE MIR -134 128 12 344 107 87 17 chr12 1240719 1241010 -142545445 + (TA)n Simple_repeat Simple_repeat 1 311 0 248 154 31 15 chr12 1241020 1241085 -142545370 + (TATAA)n Simple_repeat Simple_repeat 4 69 0 349 109 77 13 chr12 1241096 1241252 -142545203 + (TA)n Simple_repeat Simple_repeat 1 166 0 2331 67 7 10 chr12 1241273 1241570 -142544885 - AluSx SINE Alu -16 296 1 292 306 9 54 chr12 1241627 1241738 -142544717 - MIR SINE MIR -93 169 64 2371 97 0 0 chr12 1241741 1242050 -142544405 + AluSc SINE Alu 1 309 0 226 393 98 6 chr12 1242424 1242587 -142543868 - L2 LINE L2 -457 2857 2680 * 233 350 75 12 chr12 1242577 1242657 -142543798 - L2 LINE L2 -47 3225 3141 338 176 28 65 chr12 1243207 1243238 -142543217 + L1MEd LINE L1 105 136 -6069 1258 203 128 40 chr12 1243238 1243667 -142542788 - MLT1C LTR MaLR 0 467 1 338 176 28 65 chr12 1243667 1243743 -142542712 + L1MEd LINE L1 136 208 -5997 698 185 122 70 chr12 1244054 1244110 -142542345 - Charlie1 DNA MER1_type -6 2755 2703 2278 100 3 0 chr12 1244110 1244409 -142542046 + AluSp SINE Alu 1 300 -13 698 185 122 70 chr12 1244409 1244486 -142541969 - Charlie1 DNA MER1_type -58 2703 2631 1897 141 10 36 chr12 1244486 1244792 -142541663 + AluJo SINE Alu 1 298 -14 698 185 122 70 chr12 1244792 1244927 -142541528 - Charlie1 DNA MER1_type -130 2631 2472 336 281 21 0 chr12 1244948 1245044 -142541411 + L1MEd LINE L1 618 715 -5681 * 2147 229 105 52 chr12 1245029 1246054 -142540401 - L1M4b LINE L1 -3060 3584 2528 2224 112 0 3 chr12 1246054 1246367 -142540088 - AluSx SINE Alu 0 312 1 2147 229 105 52 chr12 1246367 1246479 -142539976 - L1M4b LINE L1 -4116 2528 2423 785 260 0 0 chr12 1246511 1246684 -142539771 - FRAM SINE Alu -6 170 1 1488 280 58 42 chr12 1246697 1246897 -142539558 - L1M4b LINE L1 -4392 2433 2238 1583 177 10 45 chr12 1246897 1247207 -142539248 - AluJb SINE Alu -13 299 1 1488 280 58 42 chr12 1247207 1247927 -142538528 - L1M4b LINE L1 -4587 2238 1459 2213 84 47 0 chr12 1247927 1248225 -142538230 + AluSp SINE Alu 1 312 -1 1488 280 58 42 chr12 1248225 1248284 -142538171 - L1M4b LINE L1 -5366 1459 1402 1065 210 0 15 chr12 1248293 1248488 -142537967 - AluJb SINE Alu -24 288 97 339 268 95 14 chr12 1248505 1248715 -142537740 - L1M4b LINE L1 -5246 1296 1063 294 239 54 43 chr12 1249517 1249609 -142536846 - MIR SINE MIR -70 192 100 2385 60 0 57 chr12 1250981 1251147 -142535308 - AluSq SINE Alu -14 299 125 234 0 0 0 chr12 1251147 1251173 -142535282 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2304 71 4 0 chr12 1251173 1251454 -142535001 - AluY SINE Alu -29 282 1 2385 60 0 57 chr12 1251454 1251466 -142534989 - AluSq SINE Alu -187 126 115 2366 88 3 0 chr12 1251466 1251762 -142534693 - AluSg SINE Alu -13 297 1 2385 60 0 57 chr12 1251762 1251898 -142534557 - AluSq SINE Alu -198 115 1 21 36 0 0 chr12 1252200 1252228 -142534227 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr12 1252409 1252439 -142534016 + AT_rich Low_complexity Low_complexity 1 30 0 227 230 115 35 chr12 1254170 1254257 -142532198 + L1MC5 LINE L1 7833 7926 -35 223 161 21 32 chr12 1255363 1255456 -142530999 + (TA)n Simple_repeat Simple_repeat 1 92 0 423 0 0 0 chr12 1255495 1255542 -142530913 + (TG)n Simple_repeat Simple_repeat 2 48 0 991 99 0 0 chr12 1256212 1256343 -142530112 + AluSq/x SINE Alu 1 131 -181 517 128 0 0 chr12 1256591 1256677 -142529778 - L1M4 LINE L1 -1447 4699 4614 1572 214 53 69 chr12 1256745 1257269 -142529186 - MLT2B1 LTR ERVL -4 516 1 761 241 118 14 chr12 1257323 1257671 -142528784 - L1M4 LINE L1 -1103 5043 4660 758 298 84 69 chr12 1257975 1258310 -142528145 - L1M4 LINE L1 -1947 4199 3870 2086 119 0 0 chr12 1258310 1258587 -142527868 - AluSx SINE Alu -7 305 29 758 298 84 69 chr12 1258587 1259261 -142527194 - L1M4 LINE L1 -2276 3870 3175 6083 114 22 39 chr12 1259532 1259697 -142526758 + L1MA4 LINE L1 5274 5440 -860 1227 178 170 0 chr12 1259697 1259938 -142526517 + AluJo SINE Alu 1 282 -30 6083 114 22 39 chr12 1259938 1260317 -142526138 + L1MA4 LINE L1 5440 5824 -476 396 0 0 0 chr12 1260317 1260361 -142526094 + (CA)n Simple_repeat Simple_repeat 2 45 0 6083 114 22 39 chr12 1260361 1260853 -142525602 + L1MA4 LINE L1 5824 6295 -5 741 260 61 22 chr12 1262180 1262433 -142524022 - MIR SINE MIR 0 262 2 259 243 14 27 chr12 1263854 1263928 -142522527 + (TG)n Simple_repeat Simple_repeat 1 73 0 264 359 61 8 chr12 1264028 1264155 -142522300 - MIR SINE MIR -73 135 27 2297 92 0 22 chr12 1264633 1264947 -142521508 + AluSg SINE Alu 1 307 -3 21 0 0 0 chr12 1264947 1264968 -142521487 + AT_rich Low_complexity Low_complexity 1 21 0 556 293 39 85 chr12 1267855 1268088 -142518367 - L2 LINE L2 0 3313 3098 2372 76 3 10 chr12 1268088 1268402 -142518053 + AluSx SINE Alu 1 312 0 556 293 39 85 chr12 1268402 1268499 -142517956 - L2 LINE L2 -215 3098 2998 1084 112 25 6 chr12 1268762 1268923 -142517532 + MSTB1 LTR MaLR 269 432 0 473 318 115 75 chr12 1268924 1269178 -142517277 + L2 LINE L2 2422 2703 -611 1842 111 0 0 chr12 1269178 1269421 -142517034 - AluSx SINE Alu -69 243 1 473 318 115 75 chr12 1269421 1269609 -142516846 + L2 LINE L2 2703 2882 -432 433 342 98 52 chr12 1269628 1269836 -142516619 + L2 LINE L2 2845 3042 -271 1996 155 0 0 chr12 1269836 1270162 -142516293 + AluSg SINE Alu 1 310 0 433 342 98 52 chr12 1270162 1270400 -142516055 + L2 LINE L2 3042 3312 -1 231 114 0 0 chr12 1270872 1270907 -142515548 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 880 220 40 0 chr12 1270921 1271121 -142515334 - MER3 DNA MER1_type -1 208 1 291 319 39 28 chr12 1271229 1271411 -142515044 - L1MC4a LINE L1 -1081 6727 6544 2204 128 0 0 chr12 1271654 1271959 -142514496 - AluSg SINE Alu -5 305 1 458 293 144 13 chr12 1272369 1272598 -142513857 - MIR SINE MIR 0 262 4 335 339 35 29 chr12 1272757 1272928 -142513527 - L2 LINE L2 -906 2408 2237 695 204 98 0 chr12 1272928 1273060 -142513395 + FAM SINE Alu 14 158 -27 454 345 43 5 chr12 1273134 1273343 -142513112 + L2 LINE L2 2359 2575 -739 2337 194 74 60 chr12 1273516 1274121 -142512334 - Charlie2 DNA MER1_type -73 2789 2167 2014 118 7 7 chr12 1274121 1274410 -142512045 + AluSx SINE Alu 3 291 -21 2337 194 74 60 chr12 1274410 1274658 -142511797 - Charlie2 DNA MER1_type -695 2167 1924 603 284 186 18 chr12 1274679 1274954 -142511501 - Charlie2 DNA MER1_type -2536 326 6 567 297 117 51 chr12 1274959 1275558 -142510897 + L2 LINE L2 2605 3313 0 1314 103 0 0 chr12 1275841 1276016 -142510439 - AluY SINE Alu -10 301 127 329 331 24 116 chr12 1276030 1276281 -142510174 + L2 LINE L2 3029 3256 -16 1655 181 0 14 chr12 1276859 1277151 -142509304 - AluJo SINE Alu -24 288 1 2499 87 0 0 chr12 1277922 1278234 -142508221 + AluSx SINE Alu 1 312 0 21 0 0 0 chr12 1278246 1278267 -142508188 + AT_rich Low_complexity Low_complexity 1 21 0 3514 178 64 13 chr12 1278463 1279210 -142507245 + L1MC2 LINE L1 5549 6333 -11 2634 24 0 7 chr12 1279948 1280246 -142506209 - AluY SINE Alu -15 296 1 2332 102 0 6 chr12 1280637 1280951 -142505504 + AluSq SINE Alu 1 312 -1 300 27 0 0 chr12 1282932 1282969 -142503486 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1382 238 173 65 chr12 1284238 1284804 -142501651 + HAL1 LINE L1 1402 1905 -602 2418 81 3 7 chr12 1284804 1285114 -142501341 + AluSg SINE Alu 1 309 -1 1382 238 173 65 chr12 1285114 1285545 -142500910 + HAL1 LINE L1 1905 2507 0 1425 167 75 3 chr12 1286578 1286872 -142499583 + MER33 DNA MER1_type 2 316 -8 1656 249 111 16 chr12 1287189 1287684 -142498771 - MLT1F LTR MaLR 0 542 1 695 107 52 68 chr12 1288379 1288417 -142498038 + L1MA9 LINE L1 6104 6141 -171 6606 74 9 3 chr12 1288417 1288703 -142497752 + L1PA7 LINE L1 5187 5470 -684 2466 50 0 23 chr12 1288703 1289005 -142497450 + AluY SINE Alu 16 310 -1 6606 74 9 3 chr12 1289005 1289681 -142496774 + L1PA7 LINE L1 5470 6154 0 695 107 52 68 chr12 1289681 1289834 -142496621 + L1MA9 LINE L1 6141 6299 -13 1873 138 3 3 chr12 1289834 1290123 -142496332 + AluSx SINE Alu 21 309 -3 695 107 52 68 chr12 1290123 1290137 -142496318 + L1MA9 LINE L1 6299 6312 0 292 51 0 0 chr12 1290154 1290193 -142496262 - MADE1 DNA Mariner 0 80 42 2257 102 3 0 chr12 1290937 1291232 -142495223 - AluSp SINE Alu -17 296 1 1075 216 0 0 chr12 1292401 1292619 -142493836 + L1MA4 LINE L1 6069 6286 -14 26 30 0 0 chr12 1292620 1292653 -142493802 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr12 1294046 1294084 -142492371 + AT_rich Low_complexity Low_complexity 1 38 0 2399 133 6 3 chr12 1294589 1294943 -142491512 + MLT1A1 LTR MaLR 9 363 -2 1555 155 11 33 chr12 1295459 1295730 -142490725 + AluJo SINE Alu 24 288 -24 24 0 0 0 chr12 1295730 1295754 -142490701 + AT_rich Low_complexity Low_complexity 1 24 0 246 370 22 11 chr12 1295778 1295870 -142490585 + L2 LINE L2 3144 3236 -36 239 309 120 46 chr12 1295904 1296079 -142490376 + L2 LINE L2 2649 2836 -478 656 275 85 43 chr12 1296125 1296430 -142490025 + L2 LINE L2 2995 3312 -1 2264 103 3 0 chr12 1296611 1296912 -142489543 - AluSp SINE Alu -11 302 1 2412 237 68 58 chr12 1297146 1297380 -142489075 - L1MC4a LINE L1 -1 7807 7577 787 227 152 19 chr12 1297380 1297644 -142488811 - AluJb SINE Alu -2 300 2 2412 237 68 58 chr12 1297644 1298302 -142488153 - L1MC4a LINE L1 -231 7577 6906 552 263 66 14 chr12 1298310 1298523 -142487932 - L1MC4a LINE L1 -1988 5820 5597 300 147 21 126 chr12 1298527 1298556 -142487899 + Charlie1 DNA MER1_type 2670 2700 -61 838 124 0 29 chr12 1298556 1298693 -142487762 + FLAM_C SINE Alu 1 133 0 300 147 21 126 chr12 1298693 1298758 -142487697 + Charlie1 DNA MER1_type 2700 2754 -7 345 226 65 19 chr12 1299158 1299313 -142487142 + L1ME3A LINE L1 5804 5965 -205 1698 149 29 18 chr12 1299808 1300129 -142486326 + AluSx SINE Alu 1 324 0 691 221 91 5 chr12 1300803 1301002 -142485453 - MER20 DNA MER1_type -3 216 1 1254 203 86 52 chr12 1301262 1301403 -142485052 + MER2 DNA MER2_type 9 144 -201 2891 16 0 0 chr12 1301403 1301721 -142484734 - AluYb8 SINE Alu 0 318 1 1254 203 86 52 chr12 1301721 1301905 -142484550 + MER2 DNA MER2_type 144 345 0 203 160 100 0 chr12 1301959 1302009 -142484446 - MIR SINE MIR -50 212 158 1955 97 48 14 chr12 1302493 1302782 -142483673 + AluSx SINE Alu 14 312 0 23 0 0 0 chr12 1303884 1303907 -142482548 + AT_rich Low_complexity Low_complexity 1 23 0 289 196 161 42 chr12 1304247 1304390 -142482065 - L1MC5 LINE L1 -44 7917 7758 479 217 21 146 chr12 1304453 1304626 -142481829 - L1MC4 LINE L1 -1015 7012 6810 758 242 21 11 chr12 1304626 1304812 -142481643 + MER5A DNA MER1_type 1 188 -1 479 217 21 146 chr12 1304812 1304878 -142481577 - L1MC4 LINE L1 -1217 6810 6737 1257 217 37 10 chr12 1304881 1305181 -142481274 - AluJo SINE Alu -4 308 1 1028 171 239 13 chr12 1305271 1305531 -142480924 + AluJo SINE Alu 1 302 0 278 267 0 17 chr12 1305550 1305610 -142480845 - MIR SINE MIR -129 79 21 189 306 61 61 chr12 1305685 1305832 -142480623 + MIR SINE MIR 66 212 -50 357 345 36 12 chr12 1306899 1307064 -142479391 + MIR SINE MIR 20 188 -74 316 281 12 0 chr12 1307278 1307360 -142479095 + GA-rich Low_complexity Low_complexity 3 85 0 687 303 90 23 chr12 1308677 1309253 -142477202 - L1ME LINE L1 -375 5787 5150 1618 188 35 0 chr12 1309253 1309540 -142476915 - AluJb SINE Alu -15 297 1 687 303 90 23 chr12 1309540 1309648 -142476807 - L1ME LINE L1 -1012 5150 5051 395 320 46 5 chr12 1309863 1310057 -142476398 - L1ME LINE L1 -1335 4811 4610 1041 186 32 6 chr12 1310179 1310464 -142475991 - MER47B DNA MER2_type 0 418 29 557 257 72 64 chr12 1310580 1311078 -142475377 - L1MC5 LINE L1 -195 7766 7265 2258 119 0 0 chr12 1311133 1311436 -142475019 - AluSx SINE Alu -7 305 3 4078 232 80 74 chr12 1311764 1312589 -142473866 + L1MA9 LINE L1 2109 2928 -4637 2205 93 3 3 chr12 1312589 1312879 -142473576 + AluY SINE Alu 2 291 -20 4078 232 80 74 chr12 1312879 1314328 -142472127 + L1MA9 LINE L1 2928 4392 -3173 2222 102 27 0 chr12 1314328 1314622 -142471833 + AluSx SINE Alu 1 302 -10 4078 232 80 74 chr12 1314622 1315096 -142471359 + L1MA9 LINE L1 4392 4862 -2703 1293 194 38 19 chr12 1315121 1315384 -142471071 - AluJo SINE Alu -21 291 24 4046 182 44 9 chr12 1315418 1316275 -142470180 + L1MA9 LINE L1 4873 5759 -1806 4954 139 58 45 chr12 1316282 1317650 -142468805 + L1MA9 LINE L1 5858 7326 -405 2032 142 7 0 chr12 1317650 1317945 -142468510 + AluSx SINE Alu 1 297 -15 4954 139 58 45 chr12 1317945 1318357 -142468098 + L1MA9 LINE L1 7326 7731 0 396 0 0 0 chr12 1319133 1319177 -142467278 + (TG)n Simple_repeat Simple_repeat 2 45 0 1601 178 44 0 chr12 1319179 1319449 -142467006 - AluJo SINE Alu -30 282 1 1790 164 39 32 chr12 1319618 1319928 -142466527 - AluJo SINE Alu 0 312 1 21 36 0 0 chr12 1319984 1320012 -142466443 + AT_rich Low_complexity Low_complexity 1 28 0 220 200 0 0 chr12 1320339 1320379 -142466076 + (TG)n Simple_repeat Simple_repeat 1 40 0 360 331 173 0 chr12 1321084 1321223 -142465232 + MER5A DNA MER1_type 12 174 -15 274 273 0 0 chr12 1321521 1321587 -142464868 + L2 LINE L2 3245 3310 -3 1973 119 51 10 chr12 1322112 1322407 -142464048 + AluSx SINE Alu 1 307 -5 1297 187 78 33 chr12 1322423 1322754 -142463701 + MER7A DNA MER2_type 2 345 -1 894 286 95 14 chr12 1323397 1323754 -142462701 - L2 LINE L2 -3 3310 2925 593 247 181 0 chr12 1323823 1324005 -142462450 - MER58C DNA MER1_type 0 215 1 498 304 217 34 chr12 1324229 1324730 -142461725 - L2 LINE L2 -3 3310 2720 1288 148 10 5 chr12 1324789 1324991 -142461464 + AluJb SINE Alu 100 302 -10 2493 318 100 35 chr12 1324997 1325454 -142461001 - L2 LINE L2 -620 2694 2268 2339 105 0 0 chr12 1325454 1325749 -142460706 + AluSx SINE Alu 1 295 -17 2493 318 100 35 chr12 1325749 1327009 -142459446 - L2 LINE L2 -1046 2268 866 475 355 56 21 chr12 1329660 1329894 -142456561 + MIR SINE MIR 6 247 -15 348 24 0 0 chr12 1329924 1329965 -142456490 + (TG)n Simple_repeat Simple_repeat 2 42 0 26 64 0 0 chr12 1329977 1330024 -142456431 + AT_rich Low_complexity Low_complexity 1 47 0 216 319 113 34 chr12 1330179 1330417 -142456038 - MIR SINE MIR -1 261 5 1144 139 6 0 chr12 1330696 1330869 -142455586 - AluSg/x SINE Alu -2 310 137 2070 136 0 3 chr12 1330871 1331172 -142455283 - AluSx SINE Alu -12 300 1 2153 128 21 3 chr12 1331751 1332088 -142454367 + MER61A LTR ERV1 1 343 0 2076 126 0 32 chr12 1332757 1333066 -142453389 + AluSq SINE Alu 1 299 -14 2232 77 7 3 chr12 1333179 1333465 -142452990 + AluSp SINE Alu 1 287 -26 2123 105 31 3 chr12 1333627 1333913 -142452542 - AluSc SINE Alu -15 294 1 391 260 182 13 chr12 1334855 1335009 -142451446 + MER5A DNA MER1_type 10 189 0 2282 105 0 0 chr12 1335374 1335669 -142450786 + AluSx SINE Alu 17 311 -1 1162 93 6 47 chr12 1335671 1335843 -142450612 + AluSq SINE Alu 136 300 -13 1287 129 53 31 chr12 1336161 1336386 -142450069 + MER30 DNA MER1_type 1 230 0 466 321 49 16 chr12 1336417 1336601 -142449854 + MIR SINE MIR 34 223 -39 414 105 92 0 chr12 1336695 1336771 -142449684 - MER53 DNA DNA -106 83 1 801 100 77 8 chr12 1337616 1337746 -142448709 - MER85 DNA T2_type 0 139 1 221 287 35 0 chr12 1338224 1338307 -142448148 - MIR SINE MIR -98 164 79 351 203 0 0 chr12 1339188 1339267 -142447188 + (TA)n Simple_repeat Simple_repeat 1 79 0 352 278 91 32 chr12 1339422 1339609 -142446846 + MIR SINE MIR 65 262 0 2254 91 0 0 chr12 1341269 1341556 -142444899 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr12 1341880 1341903 -142444552 + AT_rich Low_complexity Low_complexity 1 23 0 1908 169 7 0 chr12 1341955 1342251 -142444204 - AluJb SINE Alu -14 298 1 399 175 29 29 chr12 1343327 1343430 -142443025 - MER104 DNA Tc2 -47 133 31 236 243 14 14 chr12 1343597 1343671 -142442784 + (TA)n Simple_repeat Simple_repeat 2 75 0 2498 56 0 0 chr12 1343769 1344073 -142442382 + AluY SINE Alu 1 304 -7 2279 97 0 26 chr12 1344827 1345138 -142441317 - AluSq SINE Alu -10 303 1 726 87 0 0 chr12 1345293 1345396 -142441059 + MSTA LTR MaLR 1 103 -325 615 71 0 0 chr12 1345398 1345483 -142440972 + MSTA LTR MaLR 19 103 -325 618 71 0 0 chr12 1345485 1345570 -142440885 + MSTA LTR MaLR 19 103 -325 594 94 0 0 chr12 1345572 1345657 -142440798 + MSTA LTR MaLR 19 103 -325 2213 113 87 8 chr12 1345659 1346039 -142440416 + MSTA LTR MaLR 19 428 0 1760 168 14 7 chr12 1346399 1346690 -142439765 + AluJb SINE Alu 1 293 -19 219 36 0 0 chr12 1346696 1346724 -142439731 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 188 301 68 27 chr12 1347249 1347322 -142439133 + MIR SINE MIR 36 111 -151 2190 138 0 0 chr12 1347346 1347650 -142438805 + AluSx SINE Alu 1 304 -8 513 0 0 0 chr12 1347664 1347721 -142438734 + (TG)n Simple_repeat Simple_repeat 2 58 0 594 91 0 0 chr12 1347721 1347820 -142438635 + (GA)n Simple_repeat Simple_repeat 2 100 0 1748 169 24 3 chr12 1347839 1348129 -142438326 + AluJb SINE Alu 3 298 -14 436 285 76 37 chr12 1348769 1349208 -142437247 - MLT1L LTR MaLR 0 615 116 786 175 27 33 chr12 1349331 1349514 -142436941 + L1ME1 LINE L1 5976 6157 -9 214 277 0 62 chr12 1349561 1349626 -142436829 + L2 LINE L2 3003 3063 -250 203 61 30 0 chr12 1350165 1350198 -142436257 + (TTTTA)n Simple_repeat Simple_repeat 4 37 0 2304 90 0 3 chr12 1350200 1350489 -142435966 - AluSx SINE Alu -24 288 1 683 261 19 97 chr12 1350688 1351060 -142435395 + MLT2C1 LTR ERVL 4 346 -51 23 0 0 0 chr12 1351073 1351096 -142435359 + AT_rich Low_complexity Low_complexity 1 23 0 282 233 0 0 chr12 1351111 1351197 -142435258 + (TATG)n Simple_repeat Simple_repeat 2 87 0 326 289 107 0 chr12 1352521 1352642 -142433813 + MIR3 SINE MIR 10 143 -65 1380 239 75 19 chr12 1354365 1354738 -142431717 + MSTD LTR MaLR 2 395 -1 194 229 42 0 chr12 1355484 1355532 -142430923 + MER5A DNA MER1_type 52 101 -88 759 205 86 0 chr12 1355872 1356023 -142430432 - FAM SINE Alu -11 174 11 306 0 0 0 chr12 1357855 1357889 -142428566 + (CA)n Simple_repeat Simple_repeat 2 35 0 1847 155 24 3 chr12 1357889 1358179 -142428276 - AluJb SINE Alu -16 296 1 250 226 129 77 chr12 1358569 1358683 -142427772 + MER103 DNA DNA 3 129 -37 1071 155 89 118 chr12 1358683 1359031 -142427424 + MER58B DNA MER1_type 1 338 -3 250 226 129 77 chr12 1359031 1359071 -142427384 + MER103 DNA DNA 129 165 -1 1564 141 36 0 chr12 1359183 1359431 -142427024 + AluSx SINE Alu 23 279 -33 210 265 10 78 chr12 1359503 1359567 -142426888 - MIR SINE MIR -4 258 202 2063 133 3 0 chr12 1359567 1359861 -142426594 - AluSq SINE Alu -18 295 1 210 265 10 78 chr12 1359861 1359898 -142426557 - MIR SINE MIR -60 202 164 539 326 150 11 chr12 1359904 1360370 -142426085 - L2 LINE L2 -1005 2309 1779 337 270 80 135 chr12 1360388 1360751 -142425704 - L3 LINE CR1 -3 1574 1232 2633 58 0 0 chr12 1360773 1361084 -142425371 + AluY SINE Alu 1 311 0 193 200 0 25 chr12 1361804 1361844 -142424611 - L2 LINE L2 -9 3263 3225 554 221 0 7 chr12 1362197 1362342 -142424113 + L1MC/D LINE L1 5184 5327 -819 443 113 0 0 chr12 1362348 1362419 -142424036 + L1MA5A LINE L1 6222 6292 -5 1812 148 38 1 chr12 1362436 1362800 -142423655 + L1MC/D LINE L1 5290 5667 -501 2809 137 11 9 chr12 1362954 1363408 -142423047 + MSTB2 LTR MaLR 3 457 0 2209 87 13 13 chr12 1364422 1364721 -142421734 - AluSg SINE Alu -11 299 1 2144 96 3 23 chr12 1365396 1365698 -142420757 - AluSq SINE Alu -17 296 1 2154 112 3 0 chr12 1366107 1366401 -142420054 - AluSx SINE Alu -17 295 1 992 121 23 0 chr12 1366587 1366761 -142419694 + L1MA8 LINE L1 6112 6289 -2 228 91 0 0 chr12 1366813 1366846 -142419609 - U2 snRNA snRNA -155 33 1 2751 10 0 0 chr12 1367141 1367442 -142419013 - AluYb8 SINE Alu -17 301 1 198 0 0 0 chr12 1367921 1367943 -142418512 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 344 299 123 21 chr12 1368149 1368433 -142418022 + HAL1b LINE L1 494 806 -542 261 222 209 0 chr12 1368557 1368620 -142417835 + HAL1b LINE L1 961 1010 -338 2446 63 0 10 chr12 1368620 1368922 -142417533 + AluY SINE Alu 1 299 -12 261 222 209 0 chr12 1368922 1369011 -142417444 + HAL1b LINE L1 1010 1145 -203 288 309 0 8 chr12 1369014 1369140 -142417315 + HAL1b LINE L1 1193 1317 -31 430 319 33 42 chr12 1369206 1369419 -142417036 + MIR SINE MIR 46 256 -6 2352 72 7 0 chr12 1369962 1370253 -142416202 + AluY SINE Alu 1 293 -18 185 364 18 0 chr12 1371192 1371247 -142415208 + L2 LINE L2 2679 2734 -580 2509 73 0 13 chr12 1371605 1371920 -142414535 - AluSx SINE Alu -1 311 1 25 31 0 0 chr12 1372015 1372047 -142414408 + AT_rich Low_complexity Low_complexity 1 32 0 3903 54 6 8 chr12 1372277 1372776 -142413679 - L1PA6 LINE L1 -2 6152 5655 1839 86 0 16 chr12 1372776 1373021 -142413434 + AluSc SINE Alu 69 309 0 740 173 0 16 chr12 1373203 1373330 -142413125 + FLAM_C SINE Alu 1 125 -18 17664 172 22 82 chr12 1373349 1376987 -142409468 + L1PA13 LINE L1 8 3863 -2951 1957 138 24 0 chr12 1376987 1377116 -142409339 + AluSx SINE Alu 1 125 -187 195 42 0 0 chr12 1377116 1377140 -142409315 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1957 138 24 0 chr12 1377140 1377299 -142409156 + AluSx SINE Alu 125 296 -16 17664 172 22 82 chr12 1377299 1378188 -142408267 + L1PA13 LINE L1 3863 4804 -2010 288 0 0 0 chr12 1378188 1378220 -142408235 + (CCAA)n Simple_repeat Simple_repeat 4 35 0 17664 172 22 82 chr12 1378220 1380472 -142405983 + L1PA13 LINE L1 4804 6331 -483 2466 77 0 0 chr12 1380472 1380772 -142405683 + AluSc SINE Alu 1 300 -9 17664 172 22 82 chr12 1380772 1381225 -142405230 + L1PA13 LINE L1 6331 6810 -4 351 273 106 42 chr12 1381632 1382087 -142404368 + HAL1 LINE L1 823 1306 -1201 1062 275 29 52 chr12 1382617 1383100 -142403355 + L1ME3A LINE L1 5694 6165 -5 360 258 70 51 chr12 1383148 1383404 -142403051 + L1MEd LINE L1 969 1229 -4890 243 295 0 0 chr12 1383457 1383518 -142402937 + GA-rich Low_complexity Low_complexity 3 63 0 198 0 0 0 chr12 1383638 1383660 -142402795 + (TAA)n Simple_repeat Simple_repeat 2 23 0 202 311 137 26 chr12 1384234 1384424 -142402031 + L2 LINE L2 2456 2666 -648 310 273 30 0 chr12 1384519 1384618 -142401837 + MIR SINE MIR 119 220 -42 2321 98 3 3 chr12 1384786 1385091 -142401364 - AluSx SINE Alu -7 305 1 414 314 117 89 chr12 1385464 1385659 -142400796 - L2 LINE L2 -440 2874 2686 1568 201 18 7 chr12 1385659 1385942 -142400513 + AluJb SINE Alu 1 286 -26 200 31 62 0 chr12 1385946 1385978 -142400477 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 414 314 117 89 chr12 1385978 1386596 -142399859 - L2 LINE L2 -630 2684 2033 273 333 17 11 chr12 1391666 1391783 -142394672 + MIR SINE MIR 7 129 -79 329 264 145 0 chr12 1391809 1391968 -142394487 - MIR SINE MIR -6 256 75 297 324 37 22 chr12 1392774 1392910 -142393545 - MIR SINE MIR -23 239 102 2538 65 0 0 chr12 1393102 1393408 -142393047 + AluY SINE Alu 1 306 -5 368 200 98 166 chr12 1393408 1393673 -142392782 + L1MC4a LINE L1 5581 5827 -1981 491 318 49 28 chr12 1393706 1394179 -142392276 + L1MC4a LINE L1 5467 5824 -297 5404 33 5 17 chr12 1396542 1396914 -142389541 - L1PA7 LINE L1 -3 6151 5789 2450 90 0 3 chr12 1396914 1397225 -142389230 - AluSq SINE Alu -3 310 1 5404 33 5 17 chr12 1397225 1397516 -142388939 - L1PA7 LINE L1 -365 5789 5496 31 0 0 0 chr12 1397617 1397648 -142388807 + AT_rich Low_complexity Low_complexity 1 31 0 2119 87 17 3 chr12 1397916 1398205 -142388250 + AluY SINE Alu 1 293 -18 240 100 0 0 chr12 1398351 1398391 -142388064 + (TC)n Simple_repeat Simple_repeat 2 41 0 1854 87 0 0 chr12 1398507 1398761 -142387694 + AluSx SINE Alu 56 309 0 1636 134 13 0 chr12 1398786 1399018 -142387437 + AluSx SINE Alu 1 235 -77 213 39 0 0 chr12 1399036 1399062 -142387393 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr12 1399300 1399321 -142387134 + AT_rich Low_complexity Low_complexity 1 21 0 261 291 137 11 chr12 1399540 1399715 -142386740 - L1ME LINE L1 -468 5653 5457 262 292 0 17 chr12 1399738 1399858 -142386597 - L1ME LINE L1 -2380 5428 5311 261 304 51 0 chr12 1399860 1399939 -142386516 - MIR SINE MIR -109 153 71 31 16 0 66 chr12 1400085 1400115 -142386340 + AT_rich Low_complexity Low_complexity 1 27 -30 2058 113 7 0 chr12 1400115 1400397 -142386058 - AluSx SINE Alu -26 286 3 31 16 0 66 chr12 1400397 1400427 -142386028 + AT_rich Low_complexity Low_complexity 27 57 0 323 282 77 77 chr12 1400669 1401048 -142385407 + MLT1J LTR MaLR 28 406 -105 1844 136 11 0 chr12 1401444 1401709 -142384746 + AluSx SINE Alu 1 268 -44 220 306 42 14 chr12 1402870 1402942 -142383513 - MIR SINE MIR -165 97 24 1665 108 77 19 chr12 1403592 1403852 -142382603 + AluSx SINE Alu 1 275 -37 306 0 0 0 chr12 1403859 1403893 -142382562 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 680 252 33 33 chr12 1403893 1403947 -142382508 - MIR SINE MIR -38 224 171 1539 85 0 0 chr12 1403947 1404180 -142382275 + AluY SINE Alu 92 324 0 680 252 33 33 chr12 1404180 1404334 -142382121 - MIR SINE MIR -90 172 15 22 0 0 0 chr12 1404366 1404388 -142382067 + AT_rich Low_complexity Low_complexity 1 22 0 1484 227 146 25 chr12 1404714 1404918 -142381537 + MER119 DNA MER1_type 1 179 -404 2024 183 5 11 chr12 1404918 1405285 -142381170 - MLT1A1 LTR MaLR 0 365 1 1484 227 146 25 chr12 1405285 1405600 -142380855 + MER119 DNA MER1_type 179 583 0 246 62 0 0 chr12 1405869 1405901 -142380554 + (TAA)n Simple_repeat Simple_repeat 2 33 0 180 97 0 0 chr12 1407348 1407379 -142379076 + (A)n Simple_repeat Simple_repeat 1 31 0 2414 50 30 0 chr12 1409023 1409323 -142377132 + AluY SINE Alu 1 309 -2 2362 83 10 0 chr12 1410129 1410429 -142376026 - AluSp SINE Alu -10 303 1 2336 84 0 10 chr12 1410439 1410748 -142375707 - AluY SINE Alu -5 306 1 2766 134 18 26 chr12 1410748 1411129 -142375326 + Tigger1 DNA MER2_type 1922 2300 -118 1722 156 21 3 chr12 1411129 1411417 -142375038 - AluJo SINE Alu -19 293 1 2766 134 18 26 chr12 1411417 1411535 -142374920 + Tigger1 DNA MER2_type 2300 2417 -1 1734 280 54 7 chr12 1411544 1412265 -142374190 - L1M4 LINE L1 -1917 4229 3475 3165 110 21 14 chr12 1412269 1412752 -142373703 - L1PA13 LINE L1 0 6163 5678 2019 154 11 14 chr12 1412753 1413123 -142373332 - L1PB3 LINE L1 -3 6151 5783 3796 136 23 2 chr12 1413124 1414129 -142372326 - L1PB3 LINE L1 -490 5673 4649 557 255 89 22 chr12 1414128 1414399 -142372056 - L1M4 LINE L1 -2655 3491 3203 * 1127 133 126 69 chr12 1414485 1414593 -142371862 + L1MA8 LINE L1 5954 6054 -237 2285 107 0 3 chr12 1414593 1414901 -142371554 + AluSx SINE Alu 1 307 -5 1127 133 126 69 chr12 1414901 1415109 -142371346 + L1MA8 LINE L1 6054 6288 -3 225 0 0 0 chr12 1415572 1415597 -142370858 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 427 281 124 47 chr12 1416810 1416925 -142369530 - L1ME4a LINE L1 0 6121 6016 2297 81 34 0 chr12 1416925 1417223 -142369232 + AluY SINE Alu 1 308 -3 427 281 124 47 chr12 1417223 1417406 -142369049 - L1ME4a LINE L1 -105 6016 5800 2166 118 0 0 chr12 1417896 1418200 -142368255 + AluSx SINE Alu 1 304 -8 2188 111 3 7 chr12 1418763 1419060 -142367395 + AluSx SINE Alu 1 296 -16 1892 141 11 4 chr12 1419178 1419455 -142367000 + AluSx SINE Alu 1 279 -33 612 0 0 0 chr12 1419455 1419523 -142366932 + (CA)n Simple_repeat Simple_repeat 1 68 0 610 107 0 39 chr12 1419525 1419618 -142366837 + FLAM_A SINE Alu 43 133 -178 2579 48 0 6 chr12 1419618 1419930 -142366525 + AluY SINE Alu 1 310 -1 544 110 90 0 chr12 1419991 1420091 -142366364 + L1MA4 LINE L1 6163 6271 -29 22 0 0 0 chr12 1421146 1421168 -142365287 + AT_rich Low_complexity Low_complexity 1 22 0 1864 159 3 14 chr12 1421168 1421464 -142364991 - AluJb SINE Alu -19 293 1 180 0 0 0 chr12 1422349 1422369 -142364086 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 240 111 0 0 chr12 1423932 1423968 -142362487 + (TG)n Simple_repeat Simple_repeat 2 37 0 683 70 0 50 chr12 1426123 1426223 -142360232 - AluJb SINE Alu -8 304 210 358 289 10 0 chr12 1427342 1427446 -142359009 + MIR SINE MIR 1 105 -157 180 196 0 43 chr12 1427482 1427528 -142358927 + MIR SINE MIR 219 262 0 184 200 308 0 chr12 1427542 1427607 -142358848 + MIR SINE MIR 123 207 -55 569 241 59 3 chr12 1427755 1427963 -142358492 + MER58B DNA MER1_type 14 295 -46 1259 171 96 20 chr12 1427972 1428223 -142358232 + AluJo SINE Alu 28 297 -15 253 331 33 33 chr12 1428837 1428958 -142357497 - MIR3 SINE MIR -13 195 75 2261 104 0 7 chr12 1429444 1429742 -142356713 + AluSx SINE Alu 1 296 -16 1249 222 53 25 chr12 1429748 1430248 -142356207 + MLT1F LTR MaLR 26 542 0 257 284 0 0 chr12 1430348 1430415 -142356040 + L2 LINE L2 2981 3047 -225 237 278 153 0 chr12 1430515 1430587 -142355868 + L2 LINE L2 3186 3268 -4 458 287 25 18 chr12 1432285 1432455 -142354000 - MIR SINE MIR -12 250 81 2223 106 3 7 chr12 1433719 1434021 -142352434 + AluSq SINE Alu 1 301 -12 270 222 0 32 chr12 1434178 1434241 -142352214 - MIR SINE MIR -98 164 104 998 8 8 0 chr12 1435211 1435330 -142351125 + (TCTA)n Simple_repeat Simple_repeat 3 122 0 222 118 0 0 chr12 1436068 1436102 -142350353 + (CA)n Simple_repeat Simple_repeat 2 35 0 1126 290 19 17 chr12 1436246 1436712 -142349743 + L1M4 LINE L1 2345 2811 -3335 1350 199 16 26 chr12 1436716 1437120 -142349335 - MER93b LTR ERV1 0 373 17 3305 149 26 26 chr12 1437142 1437804 -142348651 + L1MA5 LINE L1 5374 6035 -265 924 164 72 125 chr12 1437804 1438108 -142348347 + LTR8A LTR ERV1 1 288 -439 1988 100 0 37 chr12 1438118 1438388 -142348067 - AluSc SINE Alu -49 260 1 1345 189 65 92 chr12 1438442 1438886 -142347569 + LTR8A LTR ERV1 290 721 -6 1338 138 40 4 chr12 1438889 1439142 -142347313 + L1MA5 LINE L1 6037 6298 -2 2233 109 0 0 chr12 1439369 1439688 -142346767 + AluY SINE Alu 1 311 0 1047 130 6 0 chr12 1440304 1440473 -142345982 - L1MB2 LINE L1 -7 6164 5995 904 175 102 84 chr12 1441021 1441110 -142345345 - MER39 LTR ERV1 -59 648 562 1794 147 0 11 chr12 1441110 1441395 -142345060 + AluJo SINE Alu 1 282 -30 1198 44 19 0 chr12 1441398 1441558 -142344897 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 904 175 102 84 chr12 1441558 1441846 -142344609 - MER39 LTR ERV1 -146 561 260 353 212 30 30 chr12 1441822 1441921 -142344534 - LTR48B LTR ERV1 -545 99 1 * 645 296 13 52 chr12 1442027 1442260 -142344195 + MIR SINE MIR 37 260 -2 2271 116 0 3 chr12 1442325 1442626 -142343829 - AluSx SINE Alu -12 300 1 635 187 37 86 chr12 1443244 1443431 -142343024 - MIR SINE MIR -2 260 83 351 241 76 12 chr12 1444068 1444236 -142342219 + MIR SINE MIR 4 256 -6 210 37 0 0 chr12 1445252 1445279 -142341176 + (CA)n Simple_repeat Simple_repeat 2 28 0 440 252 45 18 chr12 1445282 1445393 -142341062 - L2 LINE L2 -17 3296 3183 238 211 18 18 chr12 1445393 1445450 -142341005 + GA-rich Low_complexity Low_complexity 1 57 0 1444 191 21 50 chr12 1445593 1445913 -142340542 + MLT1A1 LTR MaLR 1 310 -55 2018 132 12 21 chr12 1445913 1446253 -142340202 + MER1B DNA MER1_type 1 337 0 1444 191 21 50 chr12 1446253 1446308 -142340147 + MLT1A1 LTR MaLR 310 365 0 1994 144 6 10 chr12 1446500 1446812 -142339643 - AluSx SINE Alu -1 311 1 213 219 110 68 chr12 1447135 1447208 -142339247 + MIR3 SINE MIR 88 163 -45 220 234 0 0 chr12 1447226 1447273 -142339182 - MIR SINE MIR -6 256 210 778 297 33 0 chr12 1447307 1447519 -142338936 - MIR SINE MIR -31 231 13 465 326 21 0 chr12 1447537 1447678 -142338777 - MIR SINE MIR -115 147 4 1387 135 120 68 chr12 1449901 1449958 -142336497 - MER2 DNA MER2_type -2 342 289 216 97 0 0 chr12 1449958 1449989 -142336466 + (TA)n Simple_repeat Simple_repeat 1 31 0 1387 135 120 68 chr12 1449989 1450115 -142336340 - MER2 DNA MER2_type -55 289 171 2056 131 0 0 chr12 1450115 1450419 -142336036 + AluSx SINE Alu 1 304 0 1387 135 120 68 chr12 1450419 1450558 -142335897 - MER2 DNA MER2_type -173 171 1 1068 249 69 39 chr12 1452141 1452503 -142333952 + MLT1A2 LTR MaLR 1 373 -1 27 0 0 0 chr12 1452575 1452602 -142333853 + AT_rich Low_complexity Low_complexity 1 27 0 736 144 0 0 chr12 1452602 1452713 -142333742 - FLAM_A SINE Alu -26 116 6 1288 167 13 34 chr12 1453232 1453466 -142332989 - AluJo SINE Alu -13 299 71 866 282 16 37 chr12 1453833 1454078 -142332377 + MIR SINE MIR 22 261 -1 249 211 0 0 chr12 1454139 1454196 -142332259 + (TA)n Simple_repeat Simple_repeat 2 58 0 790 149 0 45 chr12 1454221 1454355 -142332100 - FLAM_C SINE Alu -5 128 1 2171 108 3 0 chr12 1454414 1454702 -142331753 - AluSx SINE Alu -23 289 1 678 162 11 123 chr12 1454891 1454934 -142331521 + MLT1A1 LTR MaLR 1 47 -318 1966 132 3 7 chr12 1454934 1455267 -142331188 - AluSx SINE Alu 0 332 1 678 162 11 123 chr12 1455267 1455400 -142331055 + MLT1A1 LTR MaLR 47 159 -206 407 143 0 0 chr12 1455404 1455474 -142330981 + L1PA16 LINE L1 6095 6164 -2 375 181 0 0 chr12 1455769 1455841 -142330614 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 991 247 9 0 chr12 1455858 1456077 -142330378 + MLT1A1 LTR MaLR 145 365 0 192 234 0 0 chr12 1456891 1456938 -142329517 + GA-rich Low_complexity Low_complexity 2 48 0 425 225 116 25 chr12 1457384 1457478 -142328977 - L1MEd LINE L1 -2927 3202 3118 279 0 0 0 chr12 1457478 1457509 -142328946 + (TG)n Simple_repeat Simple_repeat 2 32 0 425 225 116 25 chr12 1457509 1457571 -142328884 - L1MEd LINE L1 -3011 3118 3063 2224 105 26 0 chr12 1457571 1457875 -142328580 - AluSx SINE Alu 0 312 1 425 225 116 25 chr12 1457875 1458001 -142328454 - L1MEd LINE L1 -3066 3063 2893 473 211 119 32 chr12 1458116 1458301 -142328154 - L1MEd LINE L1 -4976 1143 943 724 286 113 0 chr12 1458407 1458620 -142327835 - MIR SINE MIR -6 256 20 22 35 0 0 chr12 1458620 1458649 -142327806 + AT_rich Low_complexity Low_complexity 1 29 0 198 191 0 0 chr12 1458785 1458832 -142327623 + (CTA)n Simple_repeat Simple_repeat 2 48 0 2581 55 3 0 chr12 1458890 1459200 -142327255 + AluY SINE Alu 1 311 0 2962 183 29 87 chr12 1459211 1460802 -142325653 + L1MB7 LINE L1 4672 6169 -15 1876 160 3 22 chr12 1460872 1461190 -142325265 + AluJo SINE Alu 1 312 0 699 180 65 40 chr12 1461291 1461491 -142324964 + MLT1A1 LTR MaLR 158 362 -3 366 312 76 73 chr12 1461494 1461795 -142324660 - L1MC4a LINE L1 -1106 6702 6401 1932 130 18 0 chr12 1461840 1462124 -142324331 + AluJb SINE Alu 1 289 -23 1996 267 67 23 chr12 1462152 1462994 -142323461 - L1MC4a LINE L1 -1468 6340 5462 372 331 47 39 chr12 1463081 1463465 -142322990 - L1MEd LINE L1 -5589 530 144 294 355 59 13 chr12 1463572 1463724 -142322731 + L2 LINE L2 3114 3272 0 1801 146 140 29 chr12 1465257 1465642 -142320813 - MSTA LTR MaLR 0 428 1 2497 63 3 0 chr12 1465702 1466005 -142320450 - AluY SINE Alu -7 304 1 2307 67 40 3 chr12 1466079 1466377 -142320078 - AluY SINE Alu -1 310 2 378 0 0 0 chr12 1466474 1466516 -142319939 + (CA)n Simple_repeat Simple_repeat 2 43 0 1782 145 7 24 chr12 1466589 1466878 -142319577 - AluJb SINE Alu -28 284 1 1145 194 118 0 chr12 1467793 1468108 -142318347 + MER31A LTR ERV1 128 479 -6 1696 206 82 5 chr12 1468156 1469053 -142317402 + L1MDa LINE L1 119 1125 -5415 29 90 0 0 chr12 1469662 1469740 -142316715 + AT_rich Low_complexity Low_complexity 1 78 0 23 0 0 0 chr12 1469766 1469789 -142316666 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr12 1469982 1470004 -142316451 + AT_rich Low_complexity Low_complexity 1 22 0 373 345 76 29 chr12 1470738 1471013 -142315442 + L2 LINE L2 2165 2452 -862 357 232 58 29 chr12 1471158 1471300 -142315155 + MLT1J2 LTR MaLR 295 391 -18 289 329 13 87 chr12 1471311 1471621 -142314834 + L2 LINE L2 2564 2850 -464 2294 59 55 3 chr12 1471755 1472044 -142314411 - AluY SINE Alu -7 304 1 1276 235 154 28 chr12 1472279 1472713 -142313742 - MLT1D LTR MaLR 0 505 17 1719 189 63 85 chr12 1472759 1473204 -142313251 - MLT1D-int LTR MaLR 0 1371 937 499 268 67 58 chr12 1473257 1473458 -142312997 + L1ME3A LINE L1 5940 6145 -25 2224 113 0 13 chr12 1473458 1473758 -142312697 - AluSx SINE Alu -16 296 1 499 268 67 58 chr12 1473758 1473780 -142312675 + L1ME3A LINE L1 6145 6165 -5 2340 105 3 0 chr12 1473787 1474092 -142312363 + AluSg SINE Alu 1 306 -4 2555 26 0 10 chr12 1474539 1474841 -142311614 + AluY SINE Alu 1 299 -12 712 264 94 24 chr12 1476071 1476283 -142310172 + MIR SINE MIR 1 227 -35 1131 145 0 0 chr12 1476475 1476641 -142309814 - AluSg/x SINE Alu -15 297 132 22 0 0 0 chr12 1477286 1477308 -142309147 + AT_rich Low_complexity Low_complexity 1 22 0 246 290 29 0 chr12 1477478 1477547 -142308908 - MIR3 SINE MIR -35 173 103 383 267 59 81 chr12 1477631 1477867 -142308588 + MER102a DNA MER1_type 78 308 -22 308 337 34 0 chr12 1477949 1478038 -142308417 - MIR3 SINE MIR -111 97 6 636 174 0 97 chr12 1478628 1478783 -142307672 + FLAM_C SINE Alu 4 143 0 693 227 38 3 chr12 1479985 1480187 -142306268 - L1ME2 LINE L1 -206 5968 5756 805 234 78 34 chr12 1480188 1480562 -142305893 + MLT1F LTR MaLR 1 540 -2 364 265 18 71 chr12 1480562 1480732 -142305723 + MLT1F-int LTR MaLR 1 161 -1210 * 711 268 77 4 chr12 1480718 1480953 -142305502 + MLT1F-int LTR MaLR 265 516 -855 2246 99 0 3 chr12 1484088 1484390 -142302065 + AluSg1 SINE Alu 1 301 -8 263 289 141 21 chr12 1484504 1484646 -142301809 - MIR SINE MIR -47 215 57 1735 147 67 56 chr12 1484661 1485021 -142301434 + THE1B LTR MaLR 1 364 0 216 67 0 0 chr12 1485269 1485299 -142301156 + (A)n Simple_repeat Simple_repeat 1 30 0 2259 120 0 0 chr12 1486315 1486624 -142299831 - AluSc SINE Alu 0 309 1 607 164 9 0 chr12 1487520 1487630 -142298825 - L1MB3 LINE L1 -1 6182 6072 186 292 42 42 chr12 1488320 1488392 -142298063 - MIR SINE MIR -72 190 119 211 264 42 42 chr12 1488412 1488484 -142297971 - MIR SINE MIR -72 190 119 202 274 41 41 chr12 1488503 1488576 -142297879 - MIR SINE MIR -71 191 119 480 273 31 37 chr12 1488595 1488756 -142297699 - MIR SINE MIR -71 191 32 1851 158 20 0 chr12 1488793 1489091 -142297364 + L1MB1 LINE L1 5864 6167 -1 1782 131 55 24 chr12 1489111 1489402 -142297053 + AluJb SINE Alu 1 300 -12 307 154 115 0 chr12 1491738 1491816 -142294639 - L1ME4a LINE L1 -4 6117 6031 210 71 0 0 chr12 1492150 1492178 -142294277 + (A)n Simple_repeat Simple_repeat 1 28 0 2484 142 78 2 chr12 1493900 1494338 -142292117 - L1MB2 LINE L1 0 6171 5701 430 310 0 0 chr12 1494564 1494677 -142291778 + L2 LINE L2 3192 3304 -9 364 158 0 0 chr12 1494885 1494942 -142291513 - AluS SINE Alu -251 57 1 2186 111 3 7 chr12 1495060 1495357 -142291098 - AluSx SINE Alu -16 296 1 2172 118 0 0 chr12 1495920 1496224 -142290231 - AluSx SINE Alu -8 304 1 253 281 124 47 chr12 1496714 1496897 -142289558 + L1ME4a LINE L1 5800 6016 -105 2301 81 34 0 chr12 1496897 1497195 -142289260 - AluY SINE Alu -3 308 1 253 281 124 47 chr12 1497195 1497310 -142289145 + L1ME4a LINE L1 6016 6121 0 225 0 0 0 chr12 1498523 1498548 -142287907 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1279 134 125 69 chr12 1499008 1499219 -142287236 - L1MA8 LINE L1 0 6291 6054 2284 107 0 3 chr12 1499219 1499527 -142286928 - AluSx SINE Alu -5 307 1 1279 134 125 69 chr12 1499527 1499635 -142286820 - L1MA8 LINE L1 -237 6054 5954 616 220 8 0 chr12 1499844 1499976 -142286479 - MLT1A1 LTR MaLR 0 365 233 618 139 9 26 chr12 1499999 1500114 -142286341 - MLT1A1 LTR MaLR -252 113 1 1138 136 0 23 chr12 1500863 1501039 -142285416 + FRAM SINE Alu 1 166 -10 1737 173 6 31 chr12 1501234 1501552 -142284903 + AluJb SINE Alu 3 312 0 2023 142 3 3 chr12 1501635 1501946 -142284509 - AluSx SINE Alu -1 311 1 4221 102 38 8 chr12 1502730 1503339 -142283116 + THE1C-int LTR MaLR 954 1580 0 2240 104 122 3 chr12 1503339 1503674 -142282781 + THE1C LTR MaLR 1 375 0 1296 242 116 17 chr12 1503675 1504150 -142282305 - L1MCc LINE L1 -4025 3097 2576 * 4067 173 61 41 chr12 1504146 1505183 -142281272 - L1MB3 LINE L1 0 6183 5128 379 250 62 76 chr12 1505183 1505327 -142281128 - L1MCc LINE L1 -4532 2590 2449 1654 160 6 66 chr12 1505327 1505659 -142280796 + AluJo SINE Alu 1 312 0 379 250 62 76 chr12 1505659 1505738 -142280717 - L1MCc LINE L1 -4673 2449 2370 2186 158 18 23 chr12 1505750 1506135 -142280320 + MLT1B LTR MaLR 2 384 -6 1373 261 38 60 chr12 1506140 1507155 -142279300 - L1MCc LINE L1 -4760 2362 877 3441 209 48 22 chr12 1507848 1508579 -142277876 + MER21B LTR ERV1 1 750 -113 1011 223 67 10 chr12 1509084 1509384 -142277071 - L1MA4 LINE L1 -3 6297 5981 2053 155 33 0 chr12 1510953 1511288 -142275167 + MER7A DNA MER2_type 3 346 0 1178 159 0 0 chr12 1511735 1511917 -142274538 + AluJb SINE Alu 129 310 -2 1725 235 94 61 chr12 1512273 1512527 -142273928 + L1MC4 LINE L1 6450 6694 -1348 2106 85 4 15 chr12 1512527 1512798 -142273657 - AluSp SINE Alu -9 304 37 1725 235 94 61 chr12 1512798 1513104 -142273351 + L1MC4 LINE L1 6694 7029 -1013 1498 210 85 33 chr12 1513409 1513461 -142272994 + L1MC4 LINE L1 7025 7073 -969 258 105 0 0 chr12 1513461 1513499 -142272956 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1498 210 85 33 chr12 1513499 1513904 -142272551 + L1MC4 LINE L1 7073 7506 -536 258 222 48 0 chr12 1513999 1514062 -142272393 + L1MC4 LINE L1 7921 7986 -56 * 568 226 195 0 chr12 1514048 1514212 -142272243 - L1MC4 LINE L1 -969 7073 6878 24 32 0 0 chr12 1514217 1514248 -142272207 + AT_rich Low_complexity Low_complexity 1 31 0 293 282 204 33 chr12 1514533 1514714 -142271741 + L3 LINE CR1 1334 1545 -32 207 0 0 0 chr12 1514955 1514978 -142271477 + (T)n Simple_repeat Simple_repeat 1 23 0 387 322 51 6 chr12 1514981 1515158 -142271297 + L3b LINE CR1 1296 1480 -103 2235 119 3 0 chr12 1515382 1515692 -142270763 + AluSq SINE Alu 1 311 -2 304 220 154 55 chr12 1515816 1515998 -142270457 + L1ME2 LINE L1 5100 5299 -847 3235 208 94 17 chr12 1516035 1516811 -142269644 + L1ME2 LINE L1 5304 6139 -25 315 0 0 0 chr12 1517694 1517729 -142268726 + (TG)n Simple_repeat Simple_repeat 2 36 0 2266 97 0 10 chr12 1518508 1518816 -142267639 - AluSc SINE Alu -4 305 1 33 25 0 0 chr12 1518899 1518939 -142267516 + AT_rich Low_complexity Low_complexity 1 40 0 2077 165 0 53 chr12 1520074 1520486 -142265969 - MLT1B LTR MaLR 0 390 1 3482 142 2 19 chr12 1521536 1522072 -142264383 - MER1A DNA MER1_type 0 527 1 2176 124 10 0 chr12 1522317 1522616 -142263839 + AluSx SINE Alu 1 302 -10 206 170 0 21 chr12 1522627 1522674 -142263781 + GA-rich Low_complexity Low_complexity 1 46 0 387 242 183 0 chr12 1522746 1522866 -142263589 - MIR3 SINE MIR -12 196 55 798 180 0 0 chr12 1525140 1525262 -142261193 + FLAM_A SINE Alu 1 122 -11 285 291 104 30 chr12 1525930 1526064 -142260391 + MIR3 SINE MIR 64 207 -1 1882 183 0 3 chr12 1526363 1526674 -142259781 + AluJb SINE Alu 1 310 -2 284 155 0 17 chr12 1526674 1526732 -142259723 + GA-rich Low_complexity Low_complexity 1 57 0 242 239 0 0 chr12 1526764 1526810 -142259645 - L2 LINE L2 -3 3310 3265 2410 94 0 10 chr12 1527016 1527323 -142259132 - AluSg SINE Alu -6 304 1 1205 132 0 0 chr12 1527479 1527646 -142258809 + FRAM SINE Alu 1 166 -10 199 328 120 8 chr12 1529294 1529419 -142257036 - L2 LINE L2 0 3272 3134 189 342 58 49 chr12 1529569 1529812 -142256643 - L2 LINE L2 -444 2870 2626 1880 167 0 16 chr12 1529845 1529978 -142256477 + AluJo SINE Alu 1 135 -177 2143 97 31 7 chr12 1529978 1530267 -142256188 + AluY SINE Alu 1 296 -15 1880 167 0 16 chr12 1530267 1530444 -142256011 + AluJo SINE Alu 135 306 -6 21 0 0 0 chr12 1530506 1530527 -142255928 + AT_rich Low_complexity Low_complexity 1 21 0 646 276 131 8 chr12 1530645 1531011 -142255444 + L1ME4a LINE L1 5507 5917 -204 185 356 26 26 chr12 1531025 1531140 -142255315 - L2 LINE L2 -995 2319 2205 365 169 24 48 chr12 1531251 1531334 -142255121 + MIR SINE MIR 181 261 -1 1444 252 122 33 chr12 1531628 1532508 -142253947 - L1ME3A LINE L1 -14 6156 5355 2494 49 14 0 chr12 1532508 1532796 -142253659 + AluY SINE Alu 1 292 -19 1444 252 122 33 chr12 1532796 1533458 -142252997 - L1ME3A LINE L1 -815 5355 4458 234 315 151 20 chr12 1533458 1533604 -142252851 - L2 LINE L2 -1400 1914 1750 24 0 0 0 chr12 1534089 1534113 -142252342 + AT_rich Low_complexity Low_complexity 1 24 0 1101 181 117 37 chr12 1534923 1535222 -142251233 - MER44D DNA MER2_type -8 601 9 305 339 39 47 chr12 1535838 1536071 -142250384 - L3 LINE CR1 -291 1286 1056 2316 99 6 6 chr12 1536430 1536743 -142249712 - AluSq SINE Alu 0 313 1 1489 188 18 70 chr12 1536745 1537011 -142249444 - L1MB8 LINE L1 0 6178 5943 2193 132 0 3 chr12 1537011 1537315 -142249140 + AluJb SINE Alu 1 303 -9 1489 188 18 70 chr12 1537315 1537489 -142248966 - L1MB8 LINE L1 -235 5943 5761 2146 120 0 13 chr12 1537674 1537990 -142248465 - AluSx SINE Alu 0 312 1 2545 54 3 0 chr12 1538020 1538314 -142248141 + AluY SINE Alu 1 295 -16 374 345 58 29 chr12 1538314 1538485 -142247970 - L1MB8 LINE L1 -2081 5727 5552 2302 79 7 23 chr12 1538568 1538873 -142247582 - AluSg SINE Alu -4 306 7 1806 173 0 26 chr12 1538879 1539185 -142247270 - AluJo SINE Alu -14 298 1 2438 105 0 0 chr12 1539194 1539499 -142246956 - AluSg SINE Alu -5 305 1 281 254 18 0 chr12 1539506 1539616 -142246839 - L1MB8 LINE L1 -2400 5408 5297 355 274 53 16 chr12 1540064 1540254 -142246201 - L1MB8 LINE L1 -1365 4781 4585 310 213 106 43 chr12 1540253 1540394 -142246061 + L1ME4a LINE L1 5939 6088 -33 * 2130 106 0 3 chr12 1540408 1540721 -142245734 - AluSx SINE Alu 0 312 1 252 0 0 0 chr12 1541369 1541397 -142245058 + (T)n Simple_repeat Simple_repeat 1 28 0 1629 171 7 50 chr12 1541419 1541717 -142244738 + AluJb SINE Alu 1 285 -27 261 256 0 31 chr12 1541722 1541851 -142244604 + GA-rich Low_complexity Low_complexity 4 128 0 2512 72 0 3 chr12 1541853 1542159 -142244296 + AluY SINE Alu 1 305 -6 731 165 0 9 chr12 1542162 1542277 -142244178 - FLAM_A SINE Alu -19 114 1 572 178 62 75 chr12 1542410 1542556 -142243899 + AluJb SINE Alu 5 148 -164 535 218 137 8 chr12 1542556 1542680 -142243775 - MIR SINE MIR -108 154 15 216 114 29 0 chr12 1543483 1543518 -142242937 + MIR SINE MIR 222 257 -5 229 303 50 42 chr12 1543804 1543923 -142242532 + MIR3 SINE MIR 9 128 -80 309 82 20 0 chr12 1545040 1545089 -142241366 + FLAM SINE Alu 84 133 0 218 227 0 0 chr12 1545392 1545436 -142241019 - L2 LINE L2 -5 3308 3265 2065 101 38 3 chr12 1547257 1547545 -142238910 + AluSx SINE Alu 1 298 -14 270 0 0 0 chr12 1547545 1547575 -142238880 + (TA)n Simple_repeat Simple_repeat 2 31 0 1750 157 3 20 chr12 1551177 1551476 -142234979 + AluJo SINE Alu 1 294 -18 346 270 86 90 chr12 1551658 1551891 -142234564 + L1MC5 LINE L1 7695 7926 -35 576 289 82 14 chr12 1552048 1552256 -142234199 - MIR SINE MIR -28 234 13 1705 157 11 0 chr12 1552806 1553073 -142233382 - AluJo SINE Alu -30 282 13 183 303 83 46 chr12 1553213 1553322 -142233133 - MIR3 SINE MIR -95 113 1 2331 105 0 9 chr12 1555256 1555571 -142230884 - AluSx SINE Alu 0 312 1 242 212 61 61 chr12 1555857 1555956 -142230499 + L2 LINE L2 3138 3236 -36 216 0 0 0 chr12 1556631 1556655 -142229800 + (TG)n Simple_repeat Simple_repeat 2 25 0 1461 101 0 55 chr12 1557914 1558132 -142228323 - AluSp SINE Alu 0 313 108 304 351 18 0 chr12 1559570 1559681 -142226774 + L2 LINE L2 3200 3312 -1 288 289 47 8 chr12 1559682 1559810 -142226645 - MIR3 SINE MIR -75 133 1 2296 195 29 67 chr12 1559866 1559906 -142226549 + L1MB3 LINE L1 5573 5613 -570 2201 110 3 10 chr12 1559906 1560207 -142226248 + AluSp SINE Alu 3 301 -12 2296 195 29 67 chr12 1560207 1560798 -142225657 + L1MB3 LINE L1 5613 6180 -3 555 190 33 109 chr12 1560827 1561038 -142225417 + L1MB4 LINE L1 5986 6180 0 1935 133 61 0 chr12 1561050 1561329 -142225126 + AluSx SINE Alu 1 296 -16 200 176 14 108 chr12 1561814 1561841 -142224614 - L3 LINE CR1 -142 1435 1407 1908 150 38 10 chr12 1561841 1562134 -142224321 - AluJb SINE Alu -11 301 1 200 176 14 108 chr12 1562134 1562180 -142224275 - L3 LINE CR1 -170 1407 1369 * 347 364 50 0 chr12 1562177 1562317 -142224138 - MIR3 SINE MIR -3 205 59 273 401 46 7 chr12 1562476 1562628 -142223827 - L3 LINE CR1 -1186 391 234 2601 43 0 3 chr12 1562652 1562954 -142223501 + AluY SINE Alu 1 301 -10 263 130 0 74 chr12 1562981 1563035 -142223420 - MER58B DNA MER1_type 0 341 292 479 234 161 2 chr12 1563036 1563191 -142223264 + MER45A DNA AcHobo 1 178 0 754 222 159 0 chr12 1563191 1563448 -142223007 - MER58B DNA MER1_type -43 298 1 237 255 0 0 chr12 1564807 1564854 -142221601 - L2 LINE L2 -4 3309 3263 4884 143 29 2 chr12 1564881 1565757 -142220698 - L1MA7 LINE L1 -2 6289 5391 2033 117 0 7 chr12 1565757 1566038 -142220417 + AluSx SINE Alu 34 312 0 2763 180 16 11 chr12 1566042 1566999 -142219456 + L1M2 LINE L1 2472 3432 -3416 1181 102 0 0 chr12 1567007 1567164 -142219291 + AluSp/q SINE Alu 155 311 -2 5673 126 22 4 chr12 1567166 1567913 -142218542 + L1MA4A LINE L1 5315 6084 -219 2488 67 0 16 chr12 1567913 1568226 -142218229 + AluY SINE Alu 1 308 -3 5673 126 22 4 chr12 1568226 1568450 -142218005 + L1MA4A LINE L1 6084 6303 0 237 290 93 19 chr12 1568789 1568896 -142217559 + MIR SINE MIR 117 231 -31 3269 164 18 37 chr12 1569056 1569796 -142216659 - L1MD2 LINE L1 -456 5903 5175 1370 213 26 11 chr12 1569798 1570150 -142216305 - L1MD2 LINE L1 -1007 5139 4783 1838 126 3 99 chr12 1570161 1570495 -142215960 - AluSx SINE Alu -10 302 1 2632 158 55 2 chr12 1570688 1571212 -142215243 - L1MB3 LINE L1 -1 6182 5631 574 264 34 0 chr12 1571859 1572007 -142214448 + MIR SINE MIR 48 200 -62 2047 124 0 50 chr12 1574150 1574473 -142211982 + AluSx SINE Alu 1 307 -5 1011 182 6 0 chr12 1574810 1574980 -142211475 - AluJb SINE Alu -5 307 137 1983 107 66 17 chr12 1575076 1575365 -142211090 - AluSc SINE Alu -5 304 2 1259 169 76 76 chr12 1575474 1575753 -142210702 + MER2 DNA MER2_type 1 282 -62 2093 130 0 46 chr12 1575753 1575891 -142210564 + AluSx SINE Alu 1 144 -168 2065 108 45 3 chr12 1575891 1576179 -142210276 + AluSx SINE Alu 1 300 -12 2093 130 0 46 chr12 1576179 1576363 -142210092 + AluSx SINE Alu 144 308 -4 1259 169 76 76 chr12 1576363 1576427 -142210028 + MER2 DNA MER2_type 281 344 0 2367 82 7 0 chr12 1576677 1576970 -142209485 - AluSp SINE Alu -18 295 1 229 307 118 8 chr12 1578237 1578364 -142208091 - MIR3 SINE MIR -38 170 30 233 267 44 22 chr12 1578415 1578505 -142207950 + L2 LINE L2 3140 3231 -82 831 108 0 58 chr12 1578731 1578870 -142207585 - FLAM_C SINE Alu -2 131 1 349 314 36 67 chr12 1579131 1579185 -142207270 - MIR SINE MIR -3 259 205 1965 148 0 16 chr12 1579185 1579488 -142206967 - AluJb SINE Alu -14 298 1 349 314 36 67 chr12 1579488 1579627 -142206828 - MIR SINE MIR -57 205 72 1938 123 63 26 chr12 1579806 1580157 -142206298 - THE1B LTR MaLR 0 364 1 2167 148 0 0 chr12 1580163 1580467 -142205988 + AluJb SINE Alu 8 311 -1 2519 56 0 3 chr12 1580973 1581275 -142205180 - AluY SINE Alu -10 301 1 245 164 16 33 chr12 1581694 1581755 -142204700 + CT-rich Low_complexity Low_complexity 4 63 0 2094 99 82 0 chr12 1582395 1582677 -142203778 + AluSq SINE Alu 1 305 -8 237 208 26 26 chr12 1584241 1584318 -142202137 + G-rich Low_complexity Low_complexity 4 80 0 31 26 0 0 chr12 1584707 1584745 -142201710 + GC_rich Low_complexity Low_complexity 1 38 0 43 92 0 0 chr12 1584805 1584925 -142201530 + GC_rich Low_complexity Low_complexity 1 120 0 183 100 0 0 chr12 1584979 1585009 -142201446 + (CCG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr12 1585074 1585109 -142201346 + GC_rich Low_complexity Low_complexity 1 35 0 1960 143 6 37 chr12 1588416 1588738 -142197717 - AluJb SINE Alu 0 312 1 306 299 0 0 chr12 1588742 1588819 -142197636 + MIR3 SINE MIR 125 201 -7 433 281 100 38 chr12 1589973 1590183 -142196272 + MIR SINE MIR 28 250 -12 637 67 79 0 chr12 1590468 1590557 -142195898 + AluS SINE Alu 2 97 -215 1318 182 10 0 chr12 1590563 1590772 -142195683 - AluJo SINE Alu -101 211 1 820 272 313 5 chr12 1590772 1590900 -142195555 + L2 LINE L2 1983 2070 -1244 1847 184 36 0 chr12 1590900 1591236 -142195219 + MER7A DNA MER2_type 1 346 0 820 272 313 5 chr12 1591236 1591765 -142194690 + L2 LINE L2 2070 2843 -471 667 278 46 49 chr12 1591757 1592041 -142194414 + L2 LINE L2 3030 3312 -1 * 1700 166 42 7 chr12 1592099 1592388 -142194067 + AluJo SINE Alu 1 299 -13 1004 204 11 0 chr12 1592982 1593168 -142193287 - MER20 DNA MER1_type -3 216 29 392 320 76 31 chr12 1593625 1593850 -142192605 + MIR SINE MIR 20 254 -8 615 212 97 6 chr12 1594266 1594431 -142192024 + MER104 DNA MER2_type 1 180 0 2475 71 3 0 chr12 1595244 1595541 -142190914 + AluSc SINE Alu 1 298 -11 371 204 150 84 chr12 1595617 1595784 -142190671 + MIR SINE MIR 85 262 0 2294 106 0 16 chr12 1596150 1596453 -142190002 + AluSx SINE Alu 1 298 -14 390 295 8 0 chr12 1596725 1596742 -142189713 - L1MA10 LINE L1 0 6334 6318 1131 221 26 75 chr12 1596742 1597091 -142189364 - L1ME2 LINE L1 -9 6155 5824 1175 161 19 10 chr12 1597092 1597278 -142189177 - AluJo SINE Alu -5 307 117 207 0 0 0 chr12 1597278 1597301 -142189154 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1175 161 19 10 chr12 1597301 1597319 -142189136 - AluJo SINE Alu -195 117 101 1739 186 48 55 chr12 1597322 1597573 -142188882 - L1MC4a LINE L1 -73 7735 7487 1902 95 0 4 chr12 1597573 1597816 -142188639 - AluSx SINE Alu -16 296 55 1739 186 48 55 chr12 1597816 1598022 -142188433 - L1MC4a LINE L1 -321 7487 7281 862 268 124 29 chr12 1598099 1598576 -142187879 - L1MEc LINE L1 -4323 2073 1552 923 145 0 14 chr12 1598591 1598729 -142187726 + AluJb SINE Alu 1 136 -176 2390 87 10 0 chr12 1598729 1599028 -142187427 + AluY SINE Alu 1 302 -9 993 206 10 20 chr12 1599400 1599604 -142186851 + AluJo SINE Alu 100 301 -11 2431 86 0 0 chr12 1599782 1600083 -142186372 - AluY SINE Alu -10 301 1 283 313 50 0 chr12 1601866 1601965 -142184490 + MIR SINE MIR 70 173 -89 872 214 34 15 chr12 1601965 1602171 -142184284 + MER119 DNA MER1_type 356 565 -18 543 330 18 0 chr12 1602171 1602389 -142184066 - HsTC2c DNA Tc2 -6 723 502 2056 115 100 54 chr12 1602389 1602741 -142183714 + MSTA LTR MaLR 1 335 -93 2360 78 10 0 chr12 1602741 1603037 -142183418 + AluY SINE Alu 1 299 -12 180 0 0 0 chr12 1603042 1603062 -142183393 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2056 115 100 54 chr12 1603062 1603112 -142183343 + MSTA LTR MaLR 338 428 0 8830 129 40 42 chr12 1603114 1603598 -142182857 + MSTA-int LTR MaLR 3 486 -1094 2249 129 3 3 chr12 1603598 1603908 -142182547 + AluSx SINE Alu 1 310 -2 8830 129 40 42 chr12 1603908 1605004 -142181451 + MSTA-int LTR MaLR 486 1580 0 1707 119 116 12 chr12 1605006 1605325 -142181130 + MSTA LTR MaLR 3 354 -74 1098 237 93 11 chr12 1605355 1605710 -142180745 - HsTC2c DNA Tc2 -267 462 79 222 246 116 0 chr12 1606237 1606306 -142180149 - L2 LINE L2 -1527 1787 1711 342 246 73 9 chr12 1607140 1607250 -142179205 + MER103 DNA DNA 2 118 -48 181 338 68 38 chr12 1607984 1608117 -142178338 + L2 LINE L2 3136 3272 0 2405 99 0 0 chr12 1609009 1609311 -142177144 - AluSq SINE Alu -11 302 1 880 114 19 25 chr12 1609498 1609656 -142176799 - L1MB3 LINE L1 -1 6182 6026 267 191 79 0 chr12 1609683 1609746 -142176709 - L1MB3 LINE L1 -161 6022 5955 1973 135 3 21 chr12 1609777 1610065 -142176390 - AluJo SINE Alu -21 291 9 650 146 50 70 chr12 1610073 1610192 -142176263 - L1MB4 LINE L1 -214 5966 5879 2534 61 0 0 chr12 1610192 1610485 -142175970 - AluY SINE Alu -18 293 1 650 146 50 70 chr12 1610485 1610599 -142175856 - L1MB4 LINE L1 -301 5879 5764 3990 133 16 6 chr12 1610637 1611328 -142175127 - L1MA7 LINE L1 0 6291 5594 1199 226 80 23 chr12 1611332 1611633 -142174822 - MLT1A1 LTR MaLR -47 318 1 1661 149 91 84 chr12 1611633 1611717 -142174738 - MLT1A1-int LTR MaLR 0 1735 1653 2412 86 10 0 chr12 1611717 1612021 -142174434 - AluSp SINE Alu -6 307 1 2424 82 13 0 chr12 1612021 1612325 -142174130 - AluSp SINE Alu -5 308 1 1661 149 91 84 chr12 1612325 1612655 -142173800 - MLT1A1-int LTR MaLR -81 1654 1317 281 196 333 0 chr12 1612754 1612856 -142173599 + L2 LINE L2 3137 3272 0 2580 52 0 0 chr12 1612972 1613263 -142173192 - AluY SINE Alu -20 291 1 246 32 0 0 chr12 1613472 1613503 -142172952 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 218 286 18 0 chr12 1613916 1613972 -142172483 - L2 LINE L2 -6 3266 3210 1187 193 42 8 chr12 1614061 1614320 -142172135 - MLT1C LTR MaLR 0 467 200 389 184 13 0 chr12 1614376 1614452 -142172003 - MLT1C LTR MaLR -390 77 1 182 254 115 111 chr12 1614488 1614531 -142171924 + L2 LINE L2 3055 3096 -176 2073 142 0 3 chr12 1614531 1614827 -142171628 - AluSg SINE Alu -15 295 1 182 254 115 111 chr12 1614827 1615000 -142171455 + L2 LINE L2 3096 3272 0 267 103 0 0 chr12 1615000 1615039 -142171416 + (TGGA)n Simple_repeat Simple_repeat 2 40 0 478 255 20 33 chr12 1615381 1615534 -142170921 - MER5B DNA MER1_type -26 152 2 427 220 44 0 chr12 1615535 1615626 -142170829 - MIR3 SINE MIR -48 160 66 377 303 16 16 chr12 1615796 1615918 -142170537 + L2 LINE L2 3191 3312 -1 * 473 286 18 75 chr12 1615897 1616039 -142170416 - MIR SINE MIR 0 262 134 2253 98 14 0 chr12 1616039 1616358 -142170097 + AluSx SINE Alu 1 323 0 473 286 18 75 chr12 1616358 1616440 -142170015 - MIR SINE MIR -128 134 49 477 0 0 0 chr12 1616743 1616796 -142169659 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr12 1617445 1617467 -142168988 + AT_rich Low_complexity Low_complexity 1 22 0 850 172 14 0 chr12 1617468 1617613 -142168842 - FRAM SINE Alu -25 151 5 272 325 158 17 chr12 1618370 1618490 -142167965 + MIR SINE MIR 16 152 -56 800 201 6 13 chr12 1618491 1618650 -142167805 + FRAM SINE Alu 1 158 -8 2198 130 0 0 chr12 1618652 1618987 -142167468 + AluSq SINE Alu 1 313 0 266 182 26 26 chr12 1620325 1620402 -142166053 + (TA)n Simple_repeat Simple_repeat 1 77 0 5614 161 94 38 chr12 1620403 1621177 -142165278 + L1MCa LINE L1 117 847 -5693 2100 100 3 85 chr12 1621177 1621517 -142164938 + AluSx SINE Alu 1 312 0 5614 161 94 38 chr12 1621517 1622677 -142163778 + L1MCa LINE L1 847 2262 -4278 1395 74 26 0 chr12 1622677 1622867 -142163588 + AluSg/x SINE Alu 100 294 -16 391 188 0 0 chr12 1622867 1622936 -142163519 + L1MCa LINE L1 2582 2650 -3890 183 184 0 0 chr12 1623276 1623314 -142163141 + CT-rich Low_complexity Low_complexity 1 38 0 2467 53 0 0 chr12 1623391 1623695 -142162760 - AluY SINE Alu -6 305 2 777 256 58 5 chr12 1624119 1624429 -142162026 - LTR16C LTR ERVL 0 491 126 2377 74 3 3 chr12 1625192 1625504 -142160951 - AluSp SINE Alu -1 312 1 293 311 0 0 chr12 1625847 1625921 -142160534 - L2 LINE L2 -6 3307 3234 577 234 38 13 chr12 1626224 1626382 -142160073 - L1MA10 LINE L1 -2 6332 6171 381 305 198 59 chr12 1626639 1627281 -142159174 - L2 LINE L2 -481 2833 2103 * 411 303 135 19 chr12 1627229 1627437 -142159018 + L2 LINE L2 3022 3253 -19 223 306 128 37 chr12 1627607 1627719 -142158736 - L2 LINE L2 -246 3026 2926 2365 85 0 0 chr12 1627719 1628025 -142158430 + AluSp SINE Alu 1 306 -7 223 306 128 37 chr12 1628025 1628224 -142158231 - L2 LINE L2 -346 2926 2686 463 276 17 22 chr12 1628340 1628521 -142157934 + G-rich Low_complexity Low_complexity 1 180 0 22 0 0 0 chr12 1628899 1628921 -142157534 + AT_rich Low_complexity Low_complexity 1 22 0 247 133 22 78 chr12 1629302 1629392 -142157063 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 195 380 0 0 chr12 1630760 1630831 -142155624 + L2 LINE L2 3241 3311 -2 2059 114 7 0 chr12 1632355 1632653 -142153802 + AluSx SINE Alu 1 300 -12 2084 99 14 3 chr12 1633330 1633623 -142152832 + AluSx SINE Alu 1 296 -16 1933 128 7 3 chr12 1635839 1636267 -142150188 + AluSx SINE Alu 1 429 0 32 0 0 0 chr12 1637106 1637138 -142149317 + AT_rich Low_complexity Low_complexity 1 32 0 1697 124 4 26 chr12 1638080 1638353 -142148102 + AluJo SINE Alu 22 288 -24 2460 50 0 0 chr12 1639113 1639410 -142147045 + AluY SINE Alu 1 297 -14 823 132 0 0 chr12 1640251 1640372 -142146083 + FRAM SINE Alu 43 163 -13 685 182 25 0 chr12 1640378 1640499 -142145956 - FLAM_A SINE Alu -9 124 1 2357 62 3 19 chr12 1640952 1641261 -142145194 + AluSp SINE Alu 1 304 -9 1928 127 3 35 chr12 1643102 1643416 -142143039 + AluJb SINE Alu 1 304 -8 234 156 0 0 chr12 1643455 1643500 -142142955 + GA-rich Low_complexity Low_complexity 4 48 0 384 248 199 28 chr12 1643514 1643655 -142142800 + MIR SINE MIR 46 210 -52 307 41 41 0 chr12 1646178 1646227 -142140228 + (TA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr12 1648153 1648180 -142138275 + (CCG)n Simple_repeat Simple_repeat 2 28 0 201 288 25 25 chr12 1648193 1648311 -142138144 + C-rich Low_complexity Low_complexity 6 123 0 285 221 35 9 chr12 1648365 1648478 -142137977 + (CCG)n Simple_repeat Simple_repeat 3 118 0 39 50 0 0 chr12 1648479 1648539 -142137916 + GC_rich Low_complexity Low_complexity 1 60 0 25 95 0 0 chr12 1648786 1648860 -142137595 + GC_rich Low_complexity Low_complexity 1 74 0 310 276 23 11 chr12 1650881 1650968 -142135487 + MIR3 SINE MIR 106 193 -15 459 0 0 0 chr12 1651509 1651560 -142134895 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 113 0 17 chr12 1651617 1651918 -142134537 + AluSx SINE Alu 1 296 -16 199 253 88 66 chr12 1651930 1652021 -142134434 + L2 LINE L2 3180 3272 0 1504 171 23 7 chr12 1652271 1652558 -142133897 + L1MB2 LINE L1 5280 5558 -625 856 132 0 23 chr12 1652559 1652688 -142133767 + FLAM_C SINE Alu 1 126 -17 3348 158 14 11 chr12 1652689 1653252 -142133203 + L1MB2 LINE L1 5557 6121 -50 1080 66 7 0 chr12 1653252 1653388 -142133067 + AluSp SINE Alu 1 137 -176 2217 104 3 0 chr12 1653389 1653697 -142132758 + AluSp SINE Alu 4 312 -1 255 130 65 0 chr12 1653697 1653743 -142132712 + L1MB2 LINE L1 6121 6169 -2 226 275 0 62 chr12 1653976 1654056 -142132399 + MER94 DNA DNA 2 76 -58 1533 149 30 37 chr12 1654367 1654662 -142131793 + AluJo SINE Alu 1 293 -19 1701 144 0 14 chr12 1655110 1655387 -142131068 + AluJb SINE Alu 1 273 -39 530 233 83 79 chr12 1655703 1655931 -142130524 + MIR SINE MIR 34 262 0 2163 92 3 3 chr12 1656074 1656369 -142130086 + AluSg SINE Alu 1 295 -15 2154 105 0 0 chr12 1656593 1656887 -142129568 - AluSx SINE Alu -18 294 1 269 234 0 4 chr12 1656917 1657011 -142129444 - MER5A DNA MER1_type -2 187 57 575 327 31 13 chr12 1657251 1657477 -142128978 + MIR SINE MIR 7 236 -26 738 288 60 44 chr12 1657484 1657734 -142128721 - MIR SINE MIR -8 254 1 2171 150 35 8 chr12 1657809 1657894 -142128561 + L1MA5 LINE L1 5889 5970 -330 1778 134 3 3 chr12 1657894 1658177 -142128278 + AluJo SINE Alu 6 288 -24 2171 150 35 8 chr12 1658177 1658492 -142127963 + L1MA5 LINE L1 5970 6300 0 408 175 12 6 chr12 1658778 1658944 -142127511 + (TG)n Simple_repeat Simple_repeat 1 167 0 193 143 20 31 chr12 1658967 1659065 -142127390 + (TG)n Simple_repeat Simple_repeat 1 97 0 419 191 6 0 chr12 1659094 1659256 -142127199 + (TG)n Simple_repeat Simple_repeat 1 163 0 2132 95 3 0 chr12 1660633 1660918 -142125537 + AluSx SINE Alu 1 286 -26 234 81 0 0 chr12 1660920 1660957 -142125498 + (CTAA)n Simple_repeat Simple_repeat 3 39 0 2182 111 10 0 chr12 1661033 1661340 -142125115 + AluSg SINE Alu 1 310 0 2171 82 0 30 chr12 1661669 1661972 -142124483 - AluSx SINE Alu -18 294 1 1694 124 16 60 chr12 1663084 1663399 -142123056 - AluJb SINE Alu -11 301 1 1817 162 0 0 chr12 1663559 1663901 -142122554 - AluJo SINE Alu 0 312 1 454 171 36 45 chr12 1663997 1664108 -142122347 + L1ME3 LINE L1 6052 6161 -1 22 0 0 0 chr12 1664109 1664131 -142122324 + AT_rich Low_complexity Low_complexity 1 22 0 783 171 0 0 chr12 1664516 1664633 -142121822 + FLAM_C SINE Alu 1 117 -16 25 31 0 0 chr12 1664633 1664665 -142121790 + AT_rich Low_complexity Low_complexity 1 32 0 2437 69 0 0 chr12 1665086 1665390 -142121065 - AluY SINE Alu -7 304 1 343 284 90 45 chr12 1666584 1666718 -142119737 + L1ME LINE L1 5353 5492 -629 428 303 39 3 chr12 1666884 1667025 -142119430 - MIR3 SINE MIR -5 203 57 1788 139 7 3 chr12 1667246 1667533 -142118922 - AluJo SINE Alu -24 288 1 863 291 54 31 chr12 1667699 1668087 -142118368 - MLT1J2 LTR MaLR 0 450 54 214 293 48 85 chr12 1668727 1668915 -142117540 + L2 LINE L2 2613 2793 -521 257 109 22 0 chr12 1668986 1669032 -142117423 + CT-rich Low_complexity Low_complexity 2 48 0 996 159 63 11 chr12 1669826 1670015 -142116440 + MER3 DNA MER1_type 8 206 -3 231 311 14 14 chr12 1670116 1670190 -142116265 - MIR SINE MIR -3 259 186 26 0 0 0 chr12 1671298 1671324 -142115131 + AT_rich Low_complexity Low_complexity 1 26 0 1921 149 20 7 chr12 1671361 1671656 -142114799 + AluJb SINE Alu 13 311 -1 1896 146 7 10 chr12 1671853 1672148 -142114307 + AluJo SINE Alu 1 294 -18 832 250 51 90 chr12 1674039 1674527 -142111928 - L1ME3A LINE L1 0 6170 5702 1185 137 0 6 chr12 1674527 1674702 -142111753 - AluSc SINE Alu -4 305 132 2340 82 3 0 chr12 1674702 1674993 -142111462 - AluSc SINE Alu -13 296 5 259 393 159 0 chr12 1675086 1675287 -142111168 - L2 LINE L2 -665 2649 2417 1683 164 60 11 chr12 1675560 1675841 -142110614 - AluJo SINE Alu -17 295 1 1726 31 0 0 chr12 1676101 1676294 -142110161 - AluY SINE Alu -6 305 113 311 335 126 38 chr12 1676667 1676930 -142109525 - L2 LINE L2 -1 3312 3027 246 282 33 127 chr12 1677075 1677181 -142109274 - L2 LINE L2 -474 2840 2756 2624 61 0 0 chr12 1677181 1677491 -142108964 - AluY SINE Alu -1 310 1 246 282 33 127 chr12 1677491 1677565 -142108890 - L2 LINE L2 -558 2756 2677 2250 96 33 0 chr12 1678101 1678404 -142108051 + AluSq SINE Alu 1 313 0 503 282 140 5 chr12 1678454 1678656 -142107799 + MIR SINE MIR 37 262 0 2283 125 3 0 chr12 1679648 1679959 -142106496 - AluSx SINE Alu 0 312 1 1884 151 68 0 chr12 1679963 1680255 -142106200 - AluJo SINE Alu 0 312 1 2373 95 3 0 chr12 1680264 1680559 -142105896 - AluSp SINE Alu -17 296 1 2431 68 0 3 chr12 1680566 1680861 -142105594 - AluY SINE Alu -17 294 1 268 333 121 38 chr12 1680930 1681194 -142105261 - L2 LINE L2 -1 3312 3027 358 225 0 56 chr12 1681912 1682001 -142104454 + L2 LINE L2 3230 3313 0 1839 125 4 8 chr12 1682157 1682421 -142104034 - AluSx SINE Alu -16 296 34 218 192 19 0 chr12 1682906 1682958 -142103497 + (TG)n Simple_repeat Simple_repeat 1 53 0 21 36 0 0 chr12 1683038 1683066 -142103389 + AT_rich Low_complexity Low_complexity 1 28 0 219 184 41 20 chr12 1686536 1686585 -142099870 + L2 LINE L2 3221 3270 -2 892 108 0 8 chr12 1687928 1688048 -142098407 + FLAM_C SINE Alu 9 127 -16 663 307 179 12 chr12 1689238 1689557 -142096898 + L3 LINE CR1 1055 1426 -151 2659 157 50 18 chr12 1690159 1690494 -142095961 - L1MB7 LINE L1 -8 6176 5854 396 0 0 0 chr12 1690494 1690538 -142095917 + (TA)n Simple_repeat Simple_repeat 1 44 0 1796 161 10 30 chr12 1690539 1690699 -142095756 - AluJo SINE Alu -14 298 136 279 0 0 0 chr12 1690699 1690730 -142095725 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 2097 106 29 0 chr12 1690730 1691004 -142095451 - AluSq SINE Alu -31 282 1 1796 161 10 30 chr12 1691004 1691146 -142095309 - AluJo SINE Alu -174 138 1 2659 157 50 18 chr12 1691146 1691323 -142095132 - L1MB7 LINE L1 -329 5855 5645 843 115 56 133 chr12 1691324 1691452 -142095003 - Tigger1 DNA MER2_type -1 2417 2313 2243 84 0 45 chr12 1691452 1691760 -142094695 + AluSg SINE Alu 1 294 -16 843 115 56 133 chr12 1691760 1691865 -142094590 - Tigger1 DNA MER2_type -105 2313 2202 728 151 24 78 chr12 1691854 1691963 -142094492 - Tigger1 DNA MER2_type -2261 157 57 * 2157 96 7 0 chr12 1691963 1692273 -142094182 + AluY SINE Alu 1 312 0 728 151 24 78 chr12 1692273 1692328 -142094127 - Tigger1 DNA MER2_type -2361 57 1 922 187 87 48 chr12 1692332 1692562 -142093893 - L1MB7 LINE L1 -542 5642 5404 2473 55 3 3 chr12 1693124 1693433 -142093022 - AluY SINE Alu -2 309 1 328 321 36 0 chr12 1693433 1693545 -142092910 + L3 LINE CR1 1282 1397 -180 188 0 74 0 chr12 1694174 1694201 -142092254 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2382 94 0 3 chr12 1695099 1695398 -142091057 + AluSx SINE Alu 1 298 -14 2239 101 26 13 chr12 1695517 1695825 -142090630 + AluSx SINE Alu 1 312 0 2458 67 3 7 chr12 1697362 1697661 -142088794 - AluSp SINE Alu -14 299 2 180 77 0 0 chr12 1697683 1697709 -142088746 + (T)n Simple_repeat Simple_repeat 1 26 0 209 169 17 0 chr12 1697766 1697825 -142088630 + (TA)n Simple_repeat Simple_repeat 1 60 0 274 225 42 14 chr12 1698384 1698455 -142088000 + MIR SINE MIR 81 153 -109 192 77 0 0 chr12 1699224 1699250 -142087205 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 969 173 0 0 chr12 1699253 1699409 -142087046 - AluJo SINE Alu -30 282 127 23 54 0 0 chr12 1700297 1700334 -142086121 + AT_rich Low_complexity Low_complexity 1 37 0 2162 136 3 0 chr12 1702097 1702392 -142084063 + AluSx SINE Alu 1 296 -16 225 344 21 11 chr12 1702993 1703086 -142083369 - MIR3 SINE MIR -7 201 108 368 256 160 16 chr12 1703090 1703215 -142083240 - MER5A DNA MER1_type -33 156 14 393 70 0 0 chr12 1704099 1704156 -142082299 + (TG)n Simple_repeat Simple_repeat 2 58 0 183 80 0 0 chr12 1704908 1704933 -142081522 + (GA)n Simple_repeat Simple_repeat 2 26 0 503 255 26 39 chr12 1705215 1705368 -142081087 + L2 LINE L2 3163 3313 0 342 0 0 0 chr12 1705600 1705638 -142080817 + (TC)n Simple_repeat Simple_repeat 1 38 0 2402 75 0 19 chr12 1706396 1706714 -142079741 + AluSq SINE Alu 1 312 -1 21 36 0 0 chr12 1707056 1707084 -142079371 + AT_rich Low_complexity Low_complexity 1 28 0 2005 103 3 59 chr12 1707084 1707404 -142079051 + AluSx SINE Alu 1 302 -10 529 271 112 0 chr12 1707665 1707835 -142078620 - MIR SINE MIR 0 262 74 1746 157 13 41 chr12 1708054 1708199 -142078256 + AluJo SINE Alu 1 149 -163 1859 152 7 24 chr12 1708199 1708495 -142077960 + AluJo SINE Alu 1 291 -21 1746 157 13 41 chr12 1708495 1708667 -142077788 + AluJo SINE Alu 149 309 -3 780 211 0 0 chr12 1709797 1709925 -142076530 + FLAM_C SINE Alu 2 129 -14 323 257 9 55 chr12 1709928 1710037 -142076418 - MER5B DNA MER1_type -58 120 17 742 166 72 122 chr12 1710223 1710371 -142076084 + FAM SINE Alu 4 143 -168 2022 109 46 7 chr12 1710371 1710654 -142075801 - AluSg SINE Alu -16 294 1 742 166 72 122 chr12 1710654 1710686 -142075769 + FAM SINE Alu 143 175 0 1550 209 7 7 chr12 1711334 1711636 -142074819 - AluJo SINE Alu -10 302 1 331 136 0 17 chr12 1711646 1711705 -142074750 - FLAM SINE Alu 0 133 76 1776 174 3 33 chr12 1711934 1712233 -142074222 - AluJb SINE Alu -22 290 1 1622 121 128 12 chr12 1712473 1712730 -142073725 + AluSg SINE Alu 1 287 -23 318 288 116 14 chr12 1713176 1713322 -142073133 - MIR SINE MIR -65 197 37 20958 30 1 3 chr12 1713400 1716716 -142069739 + L1PA4 LINE L1 2838 6155 0 3538 147 49 12 chr12 1717652 1718326 -142068129 + L1MC2 LINE L1 5644 6342 -2 2187 120 0 13 chr12 1718337 1718646 -142067809 - AluSx SINE Alu -7 305 1 1712 173 67 6 chr12 1718646 1718992 -142067463 + L1MB4 LINE L1 5814 6180 0 1375 167 148 0 chr12 1719000 1719263 -142067192 + AluJo SINE Alu 1 302 0 2565 70 0 0 chr12 1719686 1719988 -142066467 - AluY SINE Alu -9 302 1 216 0 0 0 chr12 1720682 1720706 -142065749 + (A)n Simple_repeat Simple_repeat 1 24 0 871 173 0 0 chr12 1720711 1720844 -142065611 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr12 1720844 1720880 -142065575 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr12 1720955 1720998 -142065457 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chr12 1721342 1721365 -142065090 + (A)n Simple_repeat Simple_repeat 1 23 0 2416 96 0 3 chr12 1721570 1721883 -142064572 - AluSx SINE Alu 0 312 1 2208 109 13 13 chr12 1721915 1722227 -142064228 + AluSq SINE Alu 1 312 -1 28 29 0 0 chr12 1722826 1722861 -142063594 + AT_rich Low_complexity Low_complexity 1 35 0 293 325 87 16 chr12 1723136 1723262 -142063193 - L2 LINE L2 -201 3071 2937 241 310 118 68 chr12 1723303 1723745 -142062710 - L2 LINE L2 -763 2551 2088 221 321 0 18 chr12 1723707 1723763 -142062692 - MIR SINE MIR -120 88 34 * 2150 122 0 0 chr12 1723827 1724123 -142062332 + AluSq SINE Alu 1 296 -17 475 237 105 0 chr12 1724315 1724429 -142062026 + L2 LINE L2 3188 3313 0 294 284 25 0 chr12 1724622 1724703 -142061752 + L2 LINE L2 3225 3307 -6 2180 104 20 7 chr12 1724905 1725203 -142061252 + AluSq SINE Alu 1 302 -11 182 289 0 0 chr12 1725380 1725425 -142061030 + L2 LINE L2 3228 3272 0 1202 144 0 0 chr12 1725462 1725642 -142060813 + AluJb SINE Alu 129 308 -4 3136 154 35 53 chr12 1725661 1726044 -142060411 - L1MB3 LINE L1 -12 6171 5802 2246 98 0 3 chr12 1726044 1726340 -142060115 + AluSg SINE Alu 1 295 -15 3136 154 35 53 chr12 1726340 1726578 -142059877 - L1MB3 LINE L1 -381 5802 5561 259 122 0 0 chr12 1726580 1726621 -142059834 - L1MD1 LINE L1 -323 5919 5879 1729 123 27 61 chr12 1726651 1726977 -142059478 - AluSx SINE Alu 0 316 1 333 214 84 104 chr12 1727668 1727822 -142058633 + L2 LINE L2 1747 1897 -1417 1695 252 137 24 chr12 1727851 1728752 -142057703 + L2 LINE L2 2230 3239 -74 1517 129 182 116 chr12 1728753 1728809 -142057646 - MER4A LTR ERV1 0 664 613 2375 100 7 0 chr12 1728809 1729119 -142057336 + AluSx SINE Alu 1 312 0 1517 129 182 116 chr12 1729119 1729441 -142057014 - MER4A LTR ERV1 -51 613 261 533 174 10 10 chr12 1729441 1729539 -142056916 - MER4A LTR ERV1 -566 98 1 3185 104 76 17 chr12 1729551 1730022 -142056433 + MER1A DNA MER1_type 1 499 -30 304 236 14 42 chr12 1730023 1730095 -142056360 + L2 LINE L2 3243 3312 -1 245 271 75 56 chr12 1730231 1730338 -142056117 + L2 LINE L2 3122 3230 -42 1995 134 10 13 chr12 1730348 1730661 -142055794 + AluSx SINE Alu 1 312 0 662 296 69 9 chr12 1730689 1730922 -142055533 - MIR SINE MIR -6 256 10 372 226 0 0 chr12 1731722 1731810 -142054645 + L1ME1 LINE L1 6090 6184 0 265 304 0 33 chr12 1732401 1732493 -142053962 - L2 LINE L2 -6 3307 3219 2255 105 7 0 chr12 1732603 1732898 -142053557 - AluSp SINE Alu -14 299 3 731 118 2 2 chr12 1734159 1734276 -142052179 - LTR12 LTR ERV1 -132 582 170 295 264 11 0 chr12 1734276 1734367 -142052088 - LTR30 LTR ERV1 -79 643 552 1715 103 96 4 chr12 1734367 1734628 -142051827 - LTR12 LTR ERV1 -429 285 1 1000 145 6 12 chr12 1734628 1734785 -142051670 - pTR5 LTR ERV1 -1696 742 587 281 114 0 23 chr12 1734765 1734809 -142051646 + Harlequin LTR ERV1 5568 5610 -2789 * 26667 91 16 22 chr12 1734826 1738550 -142047905 + Harlequin LTR ERV1 1252 4952 -3447 829 129 188 8 chr12 1738537 1738793 -142047662 + Harlequin LTR ERV1 840 1141 -5755 * 5703 102 1 1 chr12 1738791 1739572 -142046883 + Harlequin LTR ERV1 7503 8283 -116 2162 120 3 6 chr12 1739552 1739876 -142046579 - HERV9 LTR ERV1 -8004 395 73 * 801 107 1 15 chr12 1739871 1739997 -142046458 - LTR12 LTR ERV1 -130 584 301 * 312 244 11 0 chr12 1739997 1740087 -142046368 - LTR30 LTR ERV1 -79 643 553 1248 112 122 5 chr12 1740088 1740285 -142046170 - LTR12 LTR ERV1 -429 285 66 31 26 0 0 chr12 1740561 1740599 -142045856 + AT_rich Low_complexity Low_complexity 1 38 0 2562 216 94 46 chr12 1740900 1741306 -142045149 + L1ME1 LINE L1 4319 4704 -1462 2306 98 3 0 chr12 1741306 1741601 -142044854 + AluSx SINE Alu 1 296 -16 2562 216 94 46 chr12 1741601 1742015 -142044440 + L1ME1 LINE L1 4704 5097 -1069 1048 185 106 97 chr12 1742015 1742356 -142044099 + MER2 DNA MER2_type 1 344 0 2562 216 94 46 chr12 1742356 1742552 -142043903 + L1ME1 LINE L1 5097 5282 -884 1462 177 39 45 chr12 1742552 1742863 -142043592 + AluJb SINE Alu 1 309 -3 2562 216 94 46 chr12 1742863 1743326 -142043129 + L1ME1 LINE L1 5282 5721 -445 842 208 13 0 chr12 1743326 1743480 -142042975 - FRAM SINE Alu -10 156 1 2562 216 94 46 chr12 1743480 1743725 -142042730 + L1ME1 LINE L1 5721 6161 -5 291 335 89 0 chr12 1744011 1744169 -142042286 - MIR SINE MIR -26 236 65 507 261 112 12 chr12 1744331 1744492 -142041963 - MIR SINE MIR -81 181 5 1636 127 156 0 chr12 1744672 1744955 -142041500 - MER46B DNA MER2_type -34 202 1 346 172 0 16 chr12 1744909 1744973 -142041482 + MER46A DNA MER2_type 99 161 -75 * 226 224 35 0 chr12 1746193 1746251 -142040204 + L1M4 LINE L1 4925 4984 -1162 208 241 0 0 chr12 1746251 1746309 -142040146 + A-rich Low_complexity Low_complexity 1 58 0 1015 208 20 15 chr12 1746316 1746518 -142039937 + AluJo SINE Alu 5 207 -105 243 0 0 0 chr12 1746578 1746605 -142039850 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 1463 171 80 8 chr12 1746607 1746871 -142039584 - AluJb SINE Alu -29 283 1 349 278 130 60 chr12 1746916 1747269 -142039186 - L1ME4a LINE L1 -65 6056 5679 523 228 29 29 chr12 1747364 1747500 -142038955 - LTR49 LTR ERV1 -1 594 459 307 266 213 12 chr12 1747502 1747671 -142038784 + L1M4 LINE L1 5086 5288 -858 345 288 89 57 chr12 1747711 1748027 -142038428 + L1M4 LINE L1 5328 5653 -2155 315 207 413 0 chr12 1748051 1748172 -142038283 + MER112 DNA MER1_type 67 237 -23 2223 120 3 0 chr12 1748177 1748485 -142037970 - AluSx SINE Alu -3 309 1 372 181 32 76 chr12 1748511 1748681 -142037774 + L1M4 LINE L1 5658 5820 -301 392 189 14 0 chr12 1748688 1748762 -142037693 - MER116 DNA Mariner 0 80 6 1615 180 31 3 chr12 1748903 1749197 -142037258 + AluJb SINE Alu 1 302 -10 2058 104 10 7 chr12 1750657 1750824 -142035631 - AluSp SINE Alu -14 299 129 202 0 29 57 chr12 1750824 1750859 -142035596 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2058 104 10 7 chr12 1750859 1750988 -142035467 - AluSp SINE Alu -184 129 2 205 277 191 32 chr12 1751117 1751211 -142035244 - L2 LINE L2 -18 3254 3146 327 291 36 9 chr12 1751458 1751568 -142034887 + L1ME LINE L1 5496 5608 -513 1583 170 57 11 chr12 1751802 1752084 -142034371 + AluJb SINE Alu 1 295 -17 297 0 0 0 chr12 1752085 1752118 -142034337 + (CA)n Simple_repeat Simple_repeat 2 34 0 1727 194 0 6 chr12 1753628 1753942 -142032513 + AluJo SINE Alu 1 312 0 201 171 0 0 chr12 1754456 1754491 -142031964 + A-rich Low_complexity Low_complexity 1 35 0 2134 113 0 29 chr12 1754643 1754953 -142031502 - AluSq SINE Alu -12 301 1 770 183 34 57 chr12 1754956 1755131 -142031324 - AluJo SINE Alu -16 296 126 865 191 42 0 chr12 1755145 1755313 -142031142 + AluJb SINE Alu 137 311 -1 891 189 90 0 chr12 1755314 1755526 -142030929 + L1MC2 LINE L1 6111 6341 -3 1882 164 52 12 chr12 1755675 1756004 -142030451 - MER2 DNA MER2_type 0 344 3 848 272 37 16 chr12 1756062 1756305 -142030150 + MIR SINE MIR 5 252 -10 2272 87 19 16 chr12 1756492 1756804 -142029651 + AluSq SINE Alu 1 313 0 1008 209 0 71 chr12 1756985 1757148 -142029307 - MER58A DNA MER1_type -2198 222 80 2214 125 0 0 chr12 1757148 1757452 -142029003 - AluSq SINE Alu -9 304 1 1008 209 0 71 chr12 1757452 1757527 -142028928 - MER58A DNA MER1_type -2340 80 1 218 244 0 0 chr12 1759165 1759206 -142027249 + G-rich Low_complexity Low_complexity 1 41 0 186 43 0 0 chr12 1759220 1759243 -142027212 + (CCG)n Simple_repeat Simple_repeat 3 25 0 202 224 30 15 chr12 1759262 1759329 -142027126 + (CCG)n Simple_repeat Simple_repeat 1 68 0 2295 100 3 3 chr12 1760855 1761155 -142025300 + AluSx SINE Alu 1 300 -12 1151 126 6 0 chr12 1761968 1762127 -142024328 + FRAM SINE Alu 5 164 -2 867 158 47 0 chr12 1762182 1762309 -142024146 - FLAM_C SINE Alu 0 133 1 2598 51 0 3 chr12 1762938 1763249 -142023206 + AluY SINE Alu 1 310 -1 3531 198 61 35 chr12 1763725 1764133 -142022322 - L1ME2 LINE L1 -9 6155 5759 1822 183 0 0 chr12 1764133 1764439 -142022016 - AluJo SINE Alu -2 310 5 3531 198 61 35 chr12 1764439 1764876 -142021579 - L1ME2 LINE L1 -405 5759 5284 2186 138 0 0 chr12 1764876 1765181 -142021274 - AluSx SINE Alu -7 305 1 3531 198 61 35 chr12 1765181 1765213 -142021242 - L1ME2 LINE L1 -880 5284 5254 1682 149 67 0 chr12 1766281 1766570 -142019885 + AluSx SINE Alu 1 307 0 1931 141 0 20 chr12 1766575 1766874 -142019581 + AluJo SINE Alu 1 293 -19 1995 124 7 3 chr12 1766876 1767184 -142019271 + AluY SINE Alu 1 309 0 215 294 110 18 chr12 1767252 1767284 -142019171 + MER5B DNA MER1_type 34 62 -116 1913 125 69 0 chr12 1767284 1767573 -142018882 + AluJo SINE Alu 1 309 -3 215 294 110 18 chr12 1767573 1767649 -142018806 + MER5B DNA MER1_type 62 152 -26 675 198 0 95 chr12 1767673 1767751 -142018704 + MER45A DNA AcHobo 1 54 -1527 2210 117 0 3 chr12 1767751 1768059 -142018396 - AluSq SINE Alu -6 307 1 675 198 0 95 chr12 1768059 1768165 -142018290 + MER45A DNA AcHobo 54 168 -10 1156 247 8 8 chr12 1769211 1769462 -142016993 - MIR SINE MIR 0 262 12 1656 165 14 30 chr12 1769747 1770044 -142016411 + AluJo SINE Alu 1 292 -20 2274 94 3 0 chr12 1770146 1770434 -142016021 - AluSx SINE Alu -23 289 1 293 273 0 13 chr12 1770510 1770587 -142015868 + L2 LINE L2 3196 3271 -1 201 131 66 16 chr12 1770668 1770729 -142015726 + (TATAA)n Simple_repeat Simple_repeat 4 67 0 2342 99 0 0 chr12 1771056 1771359 -142015096 + AluSg SINE Alu 1 303 -7 312 278 196 21 chr12 1771881 1772075 -142014380 + L2 LINE L2 2593 2820 -494 462 85 0 0 chr12 1772266 1772325 -142014130 - Alu SINE Alu -18 292 234 347 241 23 0 chr12 1772467 1772554 -142013901 + L1ME LINE L1 24 112 -6007 2244 99 0 0 chr12 1772557 1772851 -142013604 + AluSg SINE Alu 1 294 -16 1586 188 51 10 chr12 1772855 1773147 -142013308 + AluJo SINE Alu 1 304 -8 303 273 0 26 chr12 1773262 1773339 -142013116 + L1ME LINE L1 442 516 -5603 493 247 133 95 chr12 1773404 1773609 -142012846 + L1ME LINE L1 830 1026 -5284 2308 102 3 0 chr12 1773609 1773903 -142012552 + AluSx SINE Alu 1 295 -17 493 247 133 95 chr12 1773903 1774360 -142012095 + L1ME LINE L1 1026 1580 -4730 428 226 147 49 chr12 1774496 1774700 -142011755 + L1ME LINE L1 5506 5729 -416 2268 103 7 10 chr12 1774729 1775039 -142011416 - AluY SINE Alu -2 309 1 1728 129 4 16 chr12 1775041 1775297 -142011158 - AluSx SINE Alu -16 296 44 2263 103 3 0 chr12 1775344 1775636 -142010819 + AluSx SINE Alu 3 295 -17 507 233 67 0 chr12 1775745 1775865 -142010590 - L2 LINE L2 -3 3310 3183 3132 183 45 24 chr12 1775904 1776593 -142009862 + L1M4 LINE L1 4613 5323 -855 2040 125 7 0 chr12 1776593 1776898 -142009557 + AluSg SINE Alu 1 307 0 3132 183 45 24 chr12 1776898 1777032 -142009423 + L1M4 LINE L1 5323 5453 -725 2463 92 0 0 chr12 1777032 1777336 -142009119 + AluSx SINE Alu 1 304 -8 442 264 0 9 chr12 1777419 1777529 -142008926 - MIR3 SINE MIR -19 189 81 2377 94 0 0 chr12 1777532 1777830 -142008625 + AluSx SINE Alu 1 298 -14 2589 60 0 0 chr12 1778026 1778328 -142008127 - AluY SINE Alu -9 302 1 1916 169 3 0 chr12 1778373 1778674 -142007781 - AluSx SINE Alu -10 302 1 368 294 8 8 chr12 1778690 1778816 -142007639 - L1MC5 LINE L1 -115 7846 7721 2183 116 7 7 chr12 1780328 1780630 -142005825 + AluSg SINE Alu 1 302 -8 1446 172 31 64 chr12 1781788 1781850 -142004605 - L1MB3 LINE L1 0 6183 6121 1444 165 12 93 chr12 1781850 1782172 -142004283 + AluJo SINE Alu 1 296 -16 1446 172 31 64 chr12 1782172 1782477 -142003978 - L1MB3 LINE L1 -62 6121 5817 1803 160 0 17 chr12 1782636 1782936 -142003519 - AluJb SINE Alu -17 295 1 478 134 56 14 chr12 1783086 1783228 -142003227 + (TCTCTG)n Simple_repeat Simple_repeat 3 150 0 746 265 78 99 chr12 1783866 1784306 -142002149 - L1MB3 LINE L1 -336 5785 5364 2445 80 3 3 chr12 1784306 1784606 -142001849 + AluSp SINE Alu 1 300 -13 746 265 78 99 chr12 1784606 1784714 -142001741 - L1MB3 LINE L1 -757 5364 5255 301 250 146 0 chr12 1784720 1784816 -142001639 - L1MB3 LINE L1 -906 5240 5131 393 231 112 28 chr12 1785242 1785385 -142001070 + L1MC4 LINE L1 6495 6649 -1393 2153 142 0 0 chr12 1785423 1785732 -142000723 - AluJb SINE Alu -3 309 1 2215 120 3 0 chr12 1785749 1786058 -142000397 - AluSg SINE Alu 0 310 1 862 171 13 4 chr12 1786429 1786663 -141999792 + CT-rich Low_complexity Low_complexity 1 236 0 263 352 16 31 chr12 1786663 1786791 -141999664 - L2 LINE L2 -1 3271 3146 294 241 0 25 chr12 1787565 1787644 -141998811 + G-rich Low_complexity Low_complexity 5 81 0 417 97 0 113 chr12 1787647 1787842 -141998613 + (AGGGGG)n Simple_repeat Simple_repeat 5 177 0 403 98 0 109 chr12 1790354 1790537 -141995918 + (AGGGGG)n Simple_repeat Simple_repeat 5 167 0 180 188 24 12 chr12 1790919 1791004 -141995451 + (CCCCG)n Simple_repeat Simple_repeat 5 90 0 496 222 139 0 chr12 1792018 1792162 -141994293 + MER69A DNA AcHobo 1 164 -13 2397 88 0 13 chr12 1793109 1793415 -141993040 + AluSx SINE Alu 1 302 -10 1012 172 0 0 chr12 1793788 1793945 -141992510 - FRAM SINE Alu -19 157 1 189 378 122 11 chr12 1794153 1794333 -141992122 - L3b LINE CR1 -8 1575 1376 2360 106 3 0 chr12 1794342 1794653 -141991802 + AluSx SINE Alu 1 312 0 717 174 0 9 chr12 1795066 1795181 -141991274 + FLAM_C SINE Alu 3 116 -27 642 298 22 6 chr12 1795181 1795362 -141991093 + L3 LINE CR1 1360 1543 -34 518 240 99 9 chr12 1797684 1797875 -141988580 - MIR SINE MIR -38 224 23 258 324 11 39 chr12 1799036 1799218 -141987237 + (CA)n Simple_repeat Simple_repeat 1 177 0 227 253 14 14 chr12 1799235 1799381 -141987074 + (CA)n Simple_repeat Simple_repeat 2 147 0 461 272 27 15 chr12 1799460 1799800 -141986655 + (CA)n Simple_repeat Simple_repeat 1 344 0 921 276 54 27 chr12 1800153 1800558 -141985897 + L1ME2 LINE L1 38 453 -5617 289 271 140 0 chr12 1800944 1801051 -141985404 + L1ME2 LINE L1 709 830 -5240 1360 289 55 25 chr12 1801052 1801689 -141984766 - MLT2F LTR ERVL -7 656 1 4573 147 53 95 chr12 1801733 1801766 -141984689 - L1MA9 LINE L1 -38 6274 6241 1820 159 39 9 chr12 1801766 1802100 -141984355 + MER2 DNA MER2_type 1 344 0 4573 147 53 95 chr12 1802100 1802244 -141984211 - L1MA9 LINE L1 -71 6241 6092 189 0 0 0 chr12 1802244 1802265 -141984190 + (CAATA)n Simple_repeat Simple_repeat 4 24 0 4573 147 53 95 chr12 1802265 1803285 -141983170 - L1MA9 LINE L1 -220 6092 5108 1592 294 61 40 chr12 1803285 1803901 -141982554 + L1ME2 LINE L1 884 1527 -4734 2012 131 3 38 chr12 1803901 1804214 -141982241 + AluJo SINE Alu 1 302 -10 1592 294 61 40 chr12 1804214 1804504 -141981951 + L1ME2 LINE L1 1527 1809 -4452 1375 269 61 3 chr12 1804506 1805024 -141981431 + L1ME2 LINE L1 3737 4301 -1779 2479 215 71 21 chr12 1807120 1808120 -141978335 + L1ME2 LINE L1 4291 5447 -651 1636 143 87 4 chr12 1808120 1808410 -141978045 + AluSx SINE Alu 1 312 0 2479 215 71 21 chr12 1808410 1809059 -141977396 + L1ME2 LINE L1 5447 6062 -36 2398 109 0 3 chr12 1809090 1809403 -141977052 + AluSx SINE Alu 1 312 0 430 307 102 6 chr12 1809820 1809986 -141976469 - MIR SINE MIR -78 184 3 250 133 67 0 chr12 1810235 1810248 -141976207 + MER3 DNA MER1_type 37 52 -157 525 192 151 7 chr12 1810248 1810394 -141976061 - MER3 DNA MER1_type -2 207 41 408 264 88 0 chr12 1810827 1810918 -141975537 + MIR SINE MIR 2 100 -162 508 252 29 58 chr12 1811058 1811264 -141975191 + MIR SINE MIR 22 221 -41 332 263 12 12 chr12 1811387 1811467 -141974988 + MER5B DNA MER1_type 4 83 -95 1143 140 19 56 chr12 1811468 1811682 -141974773 - AluJo SINE Alu -22 290 85 479 245 0 0 chr12 1811682 1811780 -141974675 + MER5B DNA MER1_type 76 173 -5 1312 238 93 12 chr12 1812637 1813066 -141973389 - MLT1C LTR MaLR 0 467 4 297 267 164 48 chr12 1813289 1813454 -141973001 + L2 LINE L2 2546 2729 -585 240 314 105 42 chr12 1814258 1814449 -141972006 - L2 LINE L2 -135 3137 2935 214 306 74 8 chr12 1815146 1815267 -141971188 + MIR3 SINE MIR 66 194 -14 802 288 40 81 chr12 1815543 1815837 -141970618 - L2 LINE L2 0 3313 3041 868 119 0 35 chr12 1815837 1815980 -141970475 + L1MB5 LINE L1 6029 6166 -8 802 288 40 81 chr12 1815980 1816115 -141970340 - L2 LINE L2 -272 3041 2902 2169 142 0 0 chr12 1816127 1816430 -141970025 + AluSx SINE Alu 1 303 -9 273 386 0 15 chr12 1816537 1816669 -141969786 - MIR3 SINE MIR -3 205 76 247 284 0 0 chr12 1817369 1817443 -141969012 + L1M4 LINE L1 4513 4586 -1560 809 289 9 9 chr12 1817831 1818056 -141968399 - MIR SINE MIR -32 230 6 358 248 30 20 chr12 1818218 1818319 -141968136 + L1MC5 LINE L1 3854 3955 -2191 861 137 0 8 chr12 1818321 1818445 -141968010 - FLAM_C SINE Alu -20 123 1 1082 330 63 35 chr12 1818504 1819152 -141967303 + L1MC5 LINE L1 4026 4719 -1427 288 53 0 0 chr12 1819152 1819190 -141967265 + (CA)n Simple_repeat Simple_repeat 2 39 0 1082 330 63 35 chr12 1819190 1819640 -141966815 + L1MC5 LINE L1 4719 5155 -991 1364 203 21 21 chr12 1819650 1819931 -141966524 + AluJb SINE Alu 1 281 -31 2072 47 115 36 chr12 1819932 1820210 -141966245 - AluY SINE Alu -11 300 1 1817 263 116 74 chr12 1820360 1821928 -141964527 + L1MC5 LINE L1 5270 6771 -1190 607 200 17 0 chr12 1821928 1822070 -141964385 + FLAM_C SINE Alu 2 145 0 1817 263 116 74 chr12 1822070 1822634 -141963821 + L1MC5 LINE L1 6771 7310 -651 954 145 0 6 chr12 1822634 1822793 -141963662 + L1MB8 LINE L1 6010 6167 -11 1817 263 116 74 chr12 1822793 1823150 -141963305 + L1MC5 LINE L1 7310 7895 -66 235 225 73 15 chr12 1823162 1823247 -141963208 - MER5A DNA MER1_type -29 149 56 911 188 72 19 chr12 1824857 1825065 -141961390 + MER20 DNA MER1_type 1 219 0 184 98 24 24 chr12 1825415 1825456 -141960999 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 191 395 37 9 chr12 1827155 1827264 -141959191 - MIR3 SINE MIR -32 176 65 598 253 25 31 chr12 1827715 1827877 -141958578 - MIR SINE MIR -56 206 46 181 259 35 17 chr12 1830286 1830344 -141956111 - MIR SINE MIR -68 140 82 290 372 0 0 chr12 1830653 1830747 -141955708 + MER5A DNA MER1_type 12 105 -84 379 313 44 52 chr12 1830753 1831002 -141955453 - MIR SINE MIR -14 248 2 470 371 108 0 chr12 1831135 1831348 -141955107 - MIR SINE MIR -19 243 8 219 36 0 0 chr12 1835382 1835410 -141951045 + (TG)n Simple_repeat Simple_repeat 2 29 0 282 345 0 0 chr12 1836755 1836839 -141949616 - MIR SINE MIR -51 211 128 313 292 152 64 chr12 1837952 1838123 -141948332 + MIR SINE MIR 77 262 0 195 373 0 0 chr12 1838316 1838375 -141948080 - L2 LINE L2 0 3313 3255 796 301 22 6 chr12 1838424 1838663 -141947792 - MIR SINE MIR -14 248 15 191 300 114 0 chr12 1842032 1842102 -141944353 + MIR3 SINE MIR 120 197 -11 294 340 28 9 chr12 1844458 1844564 -141941891 + MIR SINE MIR 89 196 -66 212 296 14 28 chr12 1844948 1845019 -141941436 - MIR SINE MIR -147 115 46 507 228 144 0 chr12 1846447 1846601 -141939854 + MER5A DNA MER1_type 1 180 -9 467 337 51 6 chr12 1846733 1846908 -141939547 - MIR SINE MIR -59 203 21 221 179 0 18 chr12 1850258 1850314 -141936141 + GA-rich Low_complexity Low_complexity 4 58 0 1657 24 0 28 chr12 1851821 1852032 -141934423 - SVA Other Other 0 1386 1182 10894 35 45 5 chr12 1852047 1853371 -141933084 - SVA Other Other -2 1384 9 362 316 37 42 chr12 1853481 1853671 -141932784 + MIR3 SINE MIR 20 208 0 488 265 0 6 chr12 1853907 1854088 -141932367 + (TG)n Simple_repeat Simple_repeat 1 180 0 209 169 0 92 chr12 1854290 1854355 -141932100 + GA-rich Low_complexity Low_complexity 1 59 0 260 336 91 0 chr12 1854918 1855028 -141931427 - L3b LINE CR1 -173 1410 1291 810 291 202 7 chr12 1855192 1855641 -141930814 - L2 LINE L2 -10 3303 2943 2117 139 0 7 chr12 1855641 1855950 -141930505 + AluSx SINE Alu 1 307 -5 810 291 202 7 chr12 1855950 1856289 -141930166 - L2 LINE L2 -370 2943 2354 588 139 0 10 chr12 1856292 1856393 -141930062 + LTR12 LTR ERV1 1 100 -614 185 237 0 0 chr12 1856602 1856640 -141929815 + MIR3 SINE MIR 167 204 -4 191 211 0 0 chr12 1857192 1857230 -141929225 + MIR SINE MIR 108 145 -63 940 214 5 0 chr12 1857246 1857442 -141929013 - MER3 DNA MER1_type -3 206 10 796 199 130 0 chr12 1857459 1857620 -141928835 + MER5A DNA MER1_type 5 186 -3 406 289 95 40 chr12 1858059 1858283 -141928172 + MIR SINE MIR 18 262 0 400 232 42 18 chr12 1860005 1860173 -141926282 + (CA)n Simple_repeat Simple_repeat 1 172 0 186 296 214 0 chr12 1861404 1861502 -141924953 + MIR3 SINE MIR 52 170 -38 1066 236 28 8 chr12 1862318 1862572 -141923883 - MER58 DNA MER1_type -2161 259 1 214 268 0 18 chr12 1863125 1863181 -141923274 + L2 LINE L2 3213 3267 -5 859 238 112 59 chr12 1863352 1863860 -141922595 - MLT1F LTR MaLR -6 536 2 603 224 55 12 chr12 1863990 1864155 -141922300 + MER5A DNA MER1_type 14 185 -4 543 265 127 12 chr12 1866018 1866271 -141920184 - MLT1J LTR MaLR -202 309 28 387 0 0 0 chr12 1866668 1866711 -141919744 + (CA)n Simple_repeat Simple_repeat 2 44 0 405 0 0 0 chr12 1868772 1868817 -141917638 + (CA)n Simple_repeat Simple_repeat 2 46 0 188 108 0 27 chr12 1869147 1869184 -141917271 + (TC)n Simple_repeat Simple_repeat 1 36 0 411 277 96 12 chr12 1874307 1874473 -141911982 + MIR SINE MIR 23 202 -60 371 231 44 0 chr12 1874721 1874812 -141911643 - MER94 DNA DNA -17 117 23 333 165 39 107 chr12 1875693 1875796 -141910659 + MER21B LTR ERV1 1 96 -767 1388 231 95 16 chr12 1875799 1876483 -141909972 + MER21B LTR ERV1 16 792 -71 224 224 79 26 chr12 1878544 1878620 -141907835 - MIR SINE MIR -81 181 102 354 209 70 12 chr12 1878664 1878750 -141907705 - MIR SINE MIR -59 203 113 285 233 27 14 chr12 1878782 1878855 -141907600 + MIR SINE MIR 176 249 -13 196 277 112 30 chr12 1879981 1880095 -141906360 - MIR SINE MIR -62 146 33 183 212 0 0 chr12 1880385 1880418 -141906037 + L3b LINE CR1 1483 1515 -68 2167 95 7 3 chr12 1880533 1880827 -141905628 - AluSg SINE Alu -15 295 1 314 233 0 36 chr12 1881249 1881348 -141905107 + MIR SINE MIR 99 191 -61 326 243 133 46 chr12 1881400 1881618 -141904837 + L1 LINE L1 4197 4433 -1713 547 60 0 0 chr12 1881638 1881705 -141904750 - Alu SINE Alu -239 71 5 882 135 6 94 chr12 1881720 1881890 -141904565 - Tigger3(Golem) DNA MER2_type -3 3026 2872 348 310 0 0 chr12 1886264 1886351 -141900104 - MIR3 SINE MIR -27 181 95 806 257 25 33 chr12 1886360 1886605 -141899850 + MIR SINE MIR 20 262 0 196 364 0 15 chr12 1886635 1886701 -141899754 - MIR3 SINE MIR -140 68 4 225 100 0 0 chr12 1887175 1887205 -141899250 + AluSq SINE Alu 2 31 -102 1581 118 4 0 chr12 1887205 1887433 -141899022 + AluSq SINE Alu 72 300 -13 851 134 104 30 chr12 1887696 1887899 -141898556 + AluSg/x SINE Alu 137 351 0 457 262 81 12 chr12 1888096 1888268 -141898187 - MER112 DNA MER1_type -11 249 66 22 0 0 0 chr12 1889341 1889363 -141897092 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr12 1890067 1890089 -141896366 + AT_rich Low_complexity Low_complexity 1 22 0 4327 171 64 15 chr12 1891213 1892367 -141894088 - L1MB7 LINE L1 -81 6103 4886 2041 94 87 3 chr12 1893171 1893459 -141892996 + AluSp SINE Alu 2 313 0 240 312 138 8 chr12 1893787 1893962 -141892493 + MIR3 SINE MIR 11 212 -50 1119 60 0 0 chr12 1895697 1895830 -141890625 + AluSc SINE Alu 1 133 -176 2233 77 0 0 chr12 1895830 1896103 -141890352 + AluSc SINE Alu 1 273 -36 24 0 0 0 chr12 1898422 1898446 -141888009 + AT_rich Low_complexity Low_complexity 1 24 0 469 255 64 19 chr12 1898459 1898616 -141887839 - MIR SINE MIR -50 212 49 371 273 142 34 chr12 1898768 1898944 -141887511 + MIR3 SINE MIR 14 208 0 1427 128 18 154 chr12 1899454 1899791 -141886664 - AluJo SINE Alu -11 291 1 575 108 151 58 chr12 1899799 1899938 -141886517 - MER106A DNA MER1_type -45 191 40 26 30 0 0 chr12 1900347 1900380 -141886075 + AT_rich Low_complexity Low_complexity 1 33 0 1727 121 4 19 chr12 1900655 1900912 -141885543 + AluJb SINE Alu 45 297 -15 1911 118 35 3 chr12 1900991 1901280 -141885175 + AluSq SINE Alu 1 298 -15 617 272 76 45 chr12 1902736 1903226 -141883229 + MER110 LTR ERV1 1 485 0 2453 75 7 3 chr12 1903538 1903845 -141882610 - AluSq SINE Alu -5 308 1 224 324 70 0 chr12 1904585 1904656 -141881799 + L2 LINE L2 2922 2997 -275 211 326 0 0 chr12 1904732 1904781 -141881674 + L2 LINE L2 3138 3186 -86 346 316 72 0 chr12 1905262 1905414 -141881041 - MIR SINE MIR 0 262 100 1673 244 85 25 chr12 1905759 1906242 -141880213 + L1ME3A LINE L1 5619 6130 -40 288 0 0 0 chr12 1906242 1906274 -141880181 + (TG)n Simple_repeat Simple_repeat 2 33 0 441 290 8 30 chr12 1906644 1906775 -141879680 - MIR3 SINE MIR -36 172 45 2047 143 0 3 chr12 1906843 1907137 -141879318 - AluJo SINE Alu -19 293 1 429 214 53 46 chr12 1907338 1907469 -141878986 - MIR SINE MIR -8 254 123 230 233 20 42 chr12 1907558 1907645 -141878810 - MER5A DNA MER1_type 0 189 87 290 312 58 7 chr12 1908049 1908187 -141878268 + MIR SINE MIR 118 262 0 39 60 0 0 chr12 1908474 1908541 -141877914 + AT_rich Low_complexity Low_complexity 1 67 0 944 306 44 26 chr12 1908629 1909100 -141877355 - L2 LINE L2 -234 3038 2553 3905 175 29 7 chr12 1909250 1909591 -141876864 + L1MB8 LINE L1 5431 5763 -415 2397 184 65 50 chr12 1909591 1910133 -141876322 - MER44D DNA MER2_type 0 605 1 3905 175 29 7 chr12 1910133 1910511 -141875944 + L1MB8 LINE L1 5763 6166 -12 38 61 0 0 chr12 1910644 1910710 -141875745 + AT_rich Low_complexity Low_complexity 1 66 0 235 0 57 0 chr12 1910768 1910803 -141875652 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2046 121 0 4 chr12 1910807 1911088 -141875367 - AluSg SINE Alu -30 280 1 236 305 46 22 chr12 1911120 1911209 -141875246 - MER5A DNA MER1_type -32 146 50 274 294 124 41 chr12 1911810 1912000 -141874455 + MIR SINE MIR 3 209 -53 330 305 12 0 chr12 1912364 1912446 -141874009 + MIR3 SINE MIR 122 204 -4 1141 256 150 34 chr12 1913809 1914363 -141872092 + L2 LINE L2 2290 2907 -407 26 23 0 23 chr12 1914363 1914383 -141872072 + AT_rich Low_complexity Low_complexity 1 20 -23 2243 100 3 0 chr12 1914383 1914672 -141871783 + AluSx SINE Alu 1 290 -22 26 23 0 23 chr12 1914672 1914695 -141871760 + AT_rich Low_complexity Low_complexity 20 43 0 305 221 0 29 chr12 1914774 1914842 -141871613 + L2 LINE L2 2913 2978 -335 451 268 121 17 chr12 1914860 1915091 -141871364 + MER112 DNA MER1_type 6 260 0 2103 116 7 7 chr12 1915457 1915751 -141870704 + AluSc SINE Alu 1 294 -15 1839 106 76 0 chr12 1915819 1916083 -141870372 + AluSx SINE Alu 1 284 -28 474 65 0 0 chr12 1916083 1916145 -141870310 + (TAG)n Simple_repeat Simple_repeat 1 62 0 320 270 41 56 chr12 1916633 1916829 -141869626 + L1ME4a LINE L1 5772 5964 -157 242 295 90 0 chr12 1917067 1917145 -141869310 - MIR SINE MIR -54 208 124 21 0 0 0 chr12 1917983 1918004 -141868451 + AT_rich Low_complexity Low_complexity 1 21 0 221 266 210 42 chr12 1918059 1918202 -141868253 - MIR SINE MIR -10 252 86 963 176 6 17 chr12 1918435 1918604 -141867851 + AluSg/x SINE Alu 135 303 -7 2057 93 31 71 chr12 1918604 1918926 -141867529 + AluSc SINE Alu 1 309 0 1636 162 7 48 chr12 1919016 1919325 -141867130 + AluJo SINE Alu 4 299 -13 298 309 96 24 chr12 1919823 1920166 -141866289 + L1M4 LINE L1 4065 4435 -1711 511 234 66 51 chr12 1920173 1920247 -141866208 + L1M4 LINE L1 4245 4316 -1830 1722 168 0 36 chr12 1920247 1920556 -141865899 - AluJo SINE Alu -14 298 1 511 234 66 51 chr12 1920556 1920737 -141865718 + L1M4 LINE L1 4316 4504 -1642 1247 193 23 19 chr12 1920741 1921000 -141865455 + AluJo SINE Alu 43 302 -10 850 196 164 32 chr12 1921000 1921311 -141865144 + L1M4 LINE L1 4495 4846 -1300 609 161 153 0 chr12 1921324 1921461 -141864994 + MER21A LTR ERV1 1 158 -773 2993 150 38 32 chr12 1921552 1922105 -141864350 + MER21A LTR ERV1 376 931 0 689 184 6 81 chr12 1922107 1922281 -141864174 + L1M4 LINE L1 4859 5019 -1127 2554 65 0 0 chr12 1922285 1922593 -141863862 + AluY SINE Alu 1 308 -3 1263 257 31 38 chr12 1922593 1923258 -141863197 + L1M4b LINE L1 1550 2307 -4652 1805 219 65 80 chr12 1923409 1923743 -141862712 - L1MEc LINE L1 -3167 3048 2710 182 37 37 0 chr12 1923743 1923770 -141862685 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1805 219 65 80 chr12 1923770 1923798 -141862657 - L1MEc LINE L1 -3505 2710 2683 1571 202 3 21 chr12 1923798 1924080 -141862375 - AluJo SINE Alu -30 282 6 1805 219 65 80 chr12 1924080 1924319 -141862136 - L1MEc LINE L1 -3532 2683 2495 1785 130 123 0 chr12 1924319 1924595 -141861860 - AluSx SINE Alu -2 310 1 1805 219 65 80 chr12 1924595 1924784 -141861671 - L1MEc LINE L1 -3720 2495 2305 4976 152 6 4 chr12 1924888 1925711 -141860744 + HSMAR2 DNA Mariner 1 825 -477 2162 104 53 20 chr12 1925708 1926064 -141860391 + HSMAR2 DNA Mariner 934 1301 -1 * 1191 137 0 6 chr12 1926196 1926371 -141860084 + AluSx SINE Alu 1 174 -138 2214 102 7 0 chr12 1926429 1926734 -141859721 + AluY SINE Alu 1 307 -4 21 57 0 0 chr12 1926948 1926983 -141859472 + AT_rich Low_complexity Low_complexity 1 35 0 1404 172 62 17 chr12 1927147 1927437 -141859018 - AluJo SINE Alu -7 305 3 575 108 0 0 chr12 1927499 1927582 -141858873 - Alu SINE Alu -8 303 221 808 165 0 0 chr12 1927590 1927723 -141858732 - AluSq/x SINE Alu -179 133 1 1873 142 77 19 chr12 1927978 1928303 -141858152 - MER2 DNA MER2_type 0 344 1 1772 157 17 7 chr12 1928440 1928739 -141857716 + AluJo SINE Alu 1 302 -10 785 323 35 25 chr12 1929376 1929775 -141856680 + L2 LINE L2 2467 2869 -445 365 295 162 26 chr12 1929845 1930116 -141856339 + L2 LINE L2 2988 3295 -18 1977 184 24 8 chr12 1930205 1930586 -141855869 + MLT1B LTR MaLR 4 390 0 2203 94 0 7 chr12 1930716 1931014 -141855441 - AluSx SINE Alu -16 296 1 1178 206 81 31 chr12 1931104 1931425 -141855030 - MER58B DNA MER1_type -1 340 4 1119 315 109 24 chr12 1932338 1932887 -141853568 - L3 LINE CR1 -442 1135 540 189 319 56 14 chr12 1932945 1933017 -141853438 - L3 LINE CR1 -1150 427 353 192 329 13 13 chr12 1934610 1934689 -141851766 + L2 LINE L2 3142 3220 -93 235 236 106 24 chr12 1935219 1935342 -141851113 - MIR3 SINE MIR -72 136 4 306 298 40 40 chr12 1936105 1936256 -141850199 - MER5B DNA MER1_type -27 151 1 500 221 134 87 chr12 1938426 1938828 -141847627 + MLT1J LTR MaLR 78 498 -13 269 277 170 11 chr12 1939649 1939920 -141846535 + LTR16A LTR ERVL 130 443 -7 218 122 41 41 chr12 1940135 1940184 -141846271 + L2 LINE L2 2924 2972 -300 303 301 45 38 chr12 1940299 1940432 -141846023 + L2 LINE L2 3136 3269 -3 204 359 65 0 chr12 1940465 1940557 -141845898 + L3b LINE CR1 1258 1355 -228 374 260 103 63 chr12 1944835 1945185 -141841270 + L1ME LINE L1 600 963 -5156 699 310 42 40 chr12 1945257 1945825 -141840630 + L1ME LINE L1 1098 1666 -4463 21 0 0 0 chr12 1945996 1946017 -141840438 + AT_rich Low_complexity Low_complexity 1 21 0 625 176 17 34 chr12 1946017 1946136 -141840319 - FLAM_A SINE Alu -14 128 12 17781 163 25 23 chr12 1946366 1949781 -141836674 + L1MA4A LINE L1 7 3414 -3591 1797 117 0 11 chr12 1949781 1950045 -141836410 + AluSg1 SINE Alu 26 286 -23 17781 163 25 23 chr12 1950045 1952166 -141834289 + L1MA4A LINE L1 3414 5529 -1476 1435 191 7 24 chr12 1952166 1952459 -141833996 - AluJo SINE Alu -24 288 1 17781 163 25 23 chr12 1952459 1952909 -141833546 + L1MA4A LINE L1 5529 5977 -1028 207 0 0 0 chr12 1952909 1952932 -141833523 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 17781 163 25 23 chr12 1952932 1953127 -141833328 + L1MA4A LINE L1 5977 6170 -835 441 0 0 0 chr12 1953127 1953176 -141833279 + (CA)n Simple_repeat Simple_repeat 2 50 0 17781 163 25 23 chr12 1953176 1953566 -141832889 + L1MA4A LINE L1 6170 6608 -397 511 115 13 0 chr12 1953570 1953648 -141832807 + AluJ/FLAM SINE Alu 2 80 -232 2636 119 15 10 chr12 1953648 1954052 -141832403 + L1MA4A LINE L1 6599 7004 -1 477 289 71 16 chr12 1954054 1954307 -141832148 + L1ME LINE L1 2093 2359 -3770 670 279 32 42 chr12 1954312 1954720 -141831735 + L1ME LINE L1 2548 2951 -3178 * 1079 179 94 69 chr12 1954709 1954894 -141831561 + L1MB3 LINE L1 5101 5280 -903 207 0 0 0 chr12 1954894 1954917 -141831538 + (CAA)n Simple_repeat Simple_repeat 1 23 0 1079 179 94 69 chr12 1954917 1955164 -141831291 + L1MB3 LINE L1 5280 5532 -651 240 35 0 0 chr12 1955198 1955227 -141831228 + (TG)n Simple_repeat Simple_repeat 2 30 0 2114 144 22 27 chr12 1955237 1955640 -141830815 + L1MB3 LINE L1 5781 6181 -2 1326 286 78 14 chr12 1955665 1956497 -141829958 + L1ME LINE L1 2943 3827 -2302 906 272 22 31 chr12 1956506 1956658 -141829797 + L1ME LINE L1 5303 5455 -690 1743 155 14 30 chr12 1956658 1956955 -141829500 - AluJo SINE Alu -20 292 1 906 272 22 31 chr12 1956955 1957125 -141829330 + L1ME LINE L1 5455 5622 -523 15839 151 11 11 chr12 1957130 1961045 -141825410 + L1MA3 LINE L1 2393 6305 0 2735 101 24 13 chr12 1961045 1961499 -141824956 + L1MB5 LINE L1 1999 2457 -3927 * 6164 220 40 5 chr12 1961487 1963016 -141823439 + L1MB5 LINE L1 3975 5557 -825 201 309 18 0 chr12 1963159 1963214 -141823241 + L3 LINE CR1 1265 1320 -257 222 37 0 0 chr12 1963747 1963774 -141822681 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2334 32 0 11 chr12 1965695 1966012 -141820443 - AluY SINE Alu 0 316 3 204 317 173 0 chr12 1966228 1966332 -141820123 + L2 LINE L2 3151 3272 0 645 236 28 0 chr12 1966534 1966678 -141819777 + L1MC1 LINE L1 5583 5730 -444 1762 176 176 2 chr12 1966684 1967082 -141819373 + L1MC1 LINE L1 5865 6331 -2 2352 184 14 0 chr12 1967098 1967538 -141818917 + L1MB5 LINE L1 5957 6402 -8 2014 96 24 3 chr12 1967542 1967834 -141818621 - AluSc SINE Alu -10 299 2 230 295 259 14 chr12 1967913 1968052 -141818403 + MIR3 SINE MIR 34 206 -2 310 270 36 36 chr12 1969899 1970036 -141816419 - MIR3 SINE MIR -68 140 4 293 267 168 0 chr12 1970274 1970375 -141816080 + MIR SINE MIR 25 142 -120 344 272 61 0 chr12 1971196 1971310 -141815145 + MIR3 SINE MIR 71 191 -17 257 358 0 8 chr12 1971474 1971608 -141814847 + (CA)n Simple_repeat Simple_repeat 2 134 0 206 207 17 0 chr12 1971622 1971680 -141814775 + (CA)n Simple_repeat Simple_repeat 1 59 0 199 225 0 0 chr12 1972374 1972414 -141814041 - L2 LINE L2 -6 3307 3268 188 314 89 8 chr12 1972522 1972646 -141813809 - L2 LINE L2 -221 3051 2918 349 161 0 0 chr12 1972799 1972855 -141813600 + MER91B DNA MER1_type 2 57 -133 581 272 38 5 chr12 1973632 1973816 -141812639 + MIR SINE MIR 39 228 -34 3606 246 73 23 chr12 1975650 1976704 -141809751 + MER69 DNA AcHobo 10 1116 -1410 526 231 12 99 chr12 1976711 1976863 -141809592 + MER69 DNA AcHobo 2276 2401 -125 2289 199 7 32 chr12 1976863 1977400 -141809055 - L1MB3 LINE L1 -2 6181 5658 526 231 12 99 chr12 1977400 1977490 -141808965 + MER69 DNA AcHobo 2401 2497 -29 565 246 55 27 chr12 1977815 1978035 -141808420 + L2 LINE L2 2592 2817 -497 256 196 0 0 chr12 1978050 1978106 -141808349 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978144 1978200 -141808255 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978238 1978294 -141808161 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978332 1978388 -141808067 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978426 1978482 -141807973 - MER69 DNA AcHobo -128 2398 2343 256 196 0 0 chr12 1978520 1978576 -141807879 - MER69 DNA AcHobo -128 2398 2343 243 293 85 38 chr12 1978772 1978984 -141807471 - LTR33 LTR ERVL -7 514 293 429 254 0 42 chr12 1979232 1979374 -141807081 + L1MB7 LINE L1 6044 6179 -5 239 202 24 36 chr12 1979517 1979601 -141806854 + L2 LINE L2 3181 3263 -50 2155 161 68 68 chr12 1979863 1980367 -141806088 + L1MB3 LINE L1 5680 6183 0 2434 42 0 26 chr12 1980577 1980884 -141805571 - AluY SINE Alu -12 299 1 315 0 0 0 chr12 1981316 1981351 -141805104 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 390 21 0 0 chr12 1981350 1981397 -141805058 + (GA)n Simple_repeat Simple_repeat 1 47 0 464 225 92 35 chr12 1982173 1982346 -141804109 + MIR3 SINE MIR 15 197 -11 281 313 179 0 chr12 1982607 1982719 -141803736 + MIR SINE MIR 23 154 -108 568 257 145 36 chr12 1982721 1982997 -141803458 - MLT1L LTR MaLR 0 615 310 268 226 0 0 chr12 1983012 1983065 -141803390 - MLT1J LTR MaLR -348 163 111 238 284 15 0 chr12 1983184 1983251 -141803204 + MIR SINE MIR 176 243 -19 277 331 99 33 chr12 1983495 1983646 -141802809 + MIR3 SINE MIR 34 194 -14 211 211 0 0 chr12 1983738 1983776 -141802679 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 398 37 19 chr12 1985275 1985436 -141801019 - MIR3 SINE MIR -8 200 37 264 261 185 11 chr12 1985747 1985839 -141800616 + MIR SINE MIR 63 170 -92 956 145 6 11 chr12 1986256 1986622 -141799833 + GA-rich Low_complexity Low_complexity 1 364 0 203 329 86 26 chr12 1986887 1987039 -141799416 - L2 LINE L2 -11 3261 3101 585 280 56 13 chr12 1987226 1987458 -141798997 - MLT1L LTR MaLR -14 601 360 195 250 78 16 chr12 1987459 1987523 -141798932 + MER5A DNA MER1_type 65 132 -57 983 139 36 0 chr12 1988015 1988181 -141798274 + AluJo SINE Alu 121 292 -20 583 243 46 92 chr12 1988231 1988535 -141797920 + L1ME3 LINE L1 5863 6152 -10 351 253 12 6 chr12 1989409 1989575 -141796880 + (TG)n Simple_repeat Simple_repeat 2 168 0 251 213 19 19 chr12 1989598 1989706 -141796749 + (TG)n Simple_repeat Simple_repeat 2 109 0 252 131 0 98 chr12 1989706 1989767 -141796688 + MER4-int LTR ERV1 1111 1165 -5433 262 368 56 7 chr12 1990081 1990225 -141796230 + MIR3 SINE MIR 47 197 -11 311 280 136 0 chr12 1990874 1990992 -141795463 - MER94 DNA DNA 0 134 1 21 0 0 0 chr12 1991344 1991365 -141795090 + AT_rich Low_complexity Low_complexity 1 21 0 186 191 0 0 chr12 1991710 1991757 -141794698 + (CA)n Simple_repeat Simple_repeat 1 47 0 335 323 179 12 chr12 1991761 1992018 -141794437 + L2 LINE L2 2914 3213 -59 191 189 27 0 chr12 1995887 1995924 -141790531 + L2 LINE L2 3214 3251 -21 1052 80 0 0 chr12 1996975 1997113 -141789342 - L1P LINE L1 -4166 1980 1843 1443 76 0 0 chr12 1997137 1997322 -141789133 - AluY SINE Alu -126 185 1 5475 135 28 35 chr12 1997325 1998308 -141788147 - L1P LINE L1 -4288 1858 883 24882 80 7 32 chr12 1998309 2002545 -141783910 + L1PA8A LINE L1 1987 6113 -18 1736 154 17 10 chr12 2003209 2003508 -141782947 - AluJo SINE Alu -4 308 8 777 91 0 27 chr12 2004375 2004485 -141781970 - FLAM_C SINE Alu -35 108 2 525 221 181 38 chr12 2004807 2005030 -141781425 + MIR SINE MIR 20 261 -1 1561 181 17 17 chr12 2007174 2007467 -141778988 - AluJo SINE Alu -19 293 1 2106 100 0 10 chr12 2007510 2007810 -141778645 + AluSq SINE Alu 1 297 -16 407 267 67 22 chr12 2008195 2008330 -141778125 + L2 LINE L2 3173 3313 0 1181 173 4 9 chr12 2008682 2008908 -141777547 - AluJo SINE Alu -2 310 86 261 0 0 0 chr12 2009678 2009707 -141776748 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1752 174 6 3 chr12 2010421 2010732 -141775723 + AluJo SINE Alu 1 312 0 1696 160 24 3 chr12 2011378 2011671 -141774784 - AluJo SINE Alu -7 305 7 436 304 16 47 chr12 2013867 2014058 -141772397 + L1ME4a LINE L1 5935 6119 -2 409 232 50 0 chr12 2014457 2014556 -141771899 + L1 LINE L1 5002 5105 -1041 289 231 31 0 chr12 2014610 2014675 -141771780 + L1 LINE L1 5027 5093 -1053 345 211 40 0 chr12 2014675 2014751 -141771704 + L1 LINE L1 5027 5105 -1041 266 224 35 0 chr12 2014752 2014810 -141771645 + L1 LINE L1 5039 5098 -1048 * 314 237 40 0 chr12 2014805 2014881 -141771574 + L1 LINE L1 5027 5105 -1041 265 234 47 0 chr12 2014882 2014946 -141771509 + L1 LINE L1 5039 5105 -1041 * 310 237 40 0 chr12 2014935 2015011 -141771444 + L1 LINE L1 5027 5105 -1041 283 250 40 0 chr12 2015000 2015076 -141771379 + L1 LINE L1 5027 5105 -1041 * 326 224 40 0 chr12 2015065 2015141 -141771314 + L1 LINE L1 5027 5105 -1041 270 263 40 0 chr12 2015130 2015206 -141771249 + L1 LINE L1 5027 5105 -1041 * 248 276 40 0 chr12 2015195 2015271 -141771184 + L1 LINE L1 5027 5105 -1041 * 270 263 40 0 chr12 2015260 2015336 -141771119 + L1 LINE L1 5027 5105 -1041 * 276 246 31 0 chr12 2015325 2015390 -141771065 + L1 LINE L1 5027 5093 -1053 306 237 40 0 chr12 2015390 2015466 -141770989 + L1 LINE L1 5027 5105 -1041 239 226 38 0 chr12 2015467 2015520 -141770935 + L1 LINE L1 5039 5093 -1053 310 237 40 0 chr12 2015520 2015596 -141770859 + L1 LINE L1 5027 5105 -1041 6139 157 16 17 chr12 2015650 2016198 -141770257 + L1MA8 LINE L1 5027 5574 -717 2322 74 0 3 chr12 2016198 2016497 -141769958 + AluY SINE Alu 1 298 -13 6139 157 16 17 chr12 2016497 2017205 -141769250 + L1MA8 LINE L1 5574 6289 -2 323 349 60 13 chr12 2017224 2017373 -141769082 - L3 LINE CR1 -1 1576 1421 200 410 19 32 chr12 2018206 2018362 -141768093 - L2 LINE L2 -192 3080 2927 385 199 108 19 chr12 2018441 2018588 -141767867 + MER88 LTR ERVL 79 206 -258 * 1725 240 75 10 chr12 2018484 2018967 -141767488 - MER74B LTR ERVL -74 548 35 290 342 51 8 chr12 2019301 2019418 -141767037 - L2 LINE L2 -1 3271 3150 401 245 46 94 chr12 2019465 2019778 -141766677 - L1MC5 LINE L1 -393 7415 7219 * 806 271 151 41 chr12 2019747 2020437 -141766018 - L1MC4 LINE L1 -742 7219 6557 324 247 132 50 chr12 2020796 2020978 -141765477 - L1M4 LINE L1 -812 5334 5138 381 296 36 32 chr12 2020979 2021199 -141765256 - L1 LINE L1 -1032 5114 4894 295 295 6 12 chr12 2021611 2021777 -141764678 - L1 LINE L1 -1602 4544 4380 24 77 0 0 chr12 2021920 2021972 -141764483 + AT_rich Low_complexity Low_complexity 1 52 0 902 216 31 53 chr12 2022408 2022635 -141763820 + MER58A DNA MER1_type 2 223 -1 1848 112 56 11 chr12 2024603 2024889 -141761566 + AluSq SINE Alu 1 299 -14 23 0 0 0 chr12 2025262 2025285 -141761170 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr12 2026066 2026086 -141760369 + (T)n Simple_repeat Simple_repeat 1 20 0 314 322 17 0 chr12 2029020 2029135 -141757320 - MIR3 SINE MIR -5 203 87 351 326 0 0 chr12 2029302 2029400 -141757055 + GA-rich Low_complexity Low_complexity 3 100 0 304 314 198 16 chr12 2030550 2030671 -141755784 + L2 LINE L2 3129 3271 -1 274 204 23 11 chr12 2033356 2033444 -141753011 + GA-rich Low_complexity Low_complexity 4 92 0 2672 215 34 33 chr12 2035051 2035552 -141750903 - L1ME2 LINE L1 -9 6549 6050 2033 96 0 14 chr12 2035552 2035832 -141750623 - AluSx SINE Alu -34 278 3 2126 110 10 0 chr12 2035833 2036132 -141750323 - AluSx SINE Alu -10 302 1 2672 215 34 33 chr12 2036132 2036364 -141750091 - L1ME2 LINE L1 -507 6051 5813 1616 224 53 13 chr12 2036372 2036828 -141749627 + L1ME2 LINE L1 5761 6234 -322 840 202 40 16 chr12 2036854 2037106 -141749349 - L1ME2 LINE L1 -745 5795 5538 22 70 0 0 chr12 2037484 2037527 -141748928 + AT_rich Low_complexity Low_complexity 1 43 0 256 361 82 25 chr12 2038090 2038212 -141748243 + L2 LINE L2 3123 3251 -21 201 323 87 52 chr12 2038283 2038512 -141747943 - L2 LINE L2 -213 3059 2823 5132 230 70 36 chr12 2038683 2038728 -141747727 - L1ME2 LINE L1 -2364 4176 4134 2676 153 32 0 chr12 2038728 2039200 -141747255 - L1MB3 LINE L1 -2 6181 5695 5132 230 70 36 chr12 2039200 2042295 -141744160 - L1ME2 LINE L1 -2406 4134 954 2437 66 3 10 chr12 2042329 2042633 -141743822 - AluY SINE Alu -9 302 1 243 287 56 19 chr12 2042746 2042854 -141743601 - L1ME2 LINE L1 -5632 898 787 244 289 48 32 chr12 2043242 2043428 -141743027 - L1ME2 LINE L1 -5883 647 59 657 263 129 51 chr12 2043946 2044612 -141741843 - HAL1 LINE L1 0 2507 1790 1314 259 35 20 chr12 2044627 2044974 -141741481 - MLT1I LTR MaLR 0 409 58 355 209 143 9 chr12 2045123 2045228 -141741227 - HAL1 LINE L1 -2388 119 1 774 174 0 0 chr12 2045623 2045744 -141740711 + FLAM_A SINE Alu 1 121 -12 514 163 0 22 chr12 2045770 2045862 -141740593 + FRAM SINE Alu 61 150 -26 218 238 50 28 chr12 2045871 2045953 -141740502 + GA-rich Low_complexity Low_complexity 5 72 0 2038 135 7 13 chr12 2045953 2046257 -141740198 + AluSx SINE Alu 1 302 -10 324 351 107 19 chr12 2046597 2046802 -141739653 + MIR SINE MIR 28 250 -12 278 266 55 37 chr12 2047741 2047850 -141738605 + MIR SINE MIR 108 218 -44 1008 180 112 52 chr12 2047892 2048197 -141738258 - MER33 DNA MER1_type 0 324 2 21 36 0 0 chr12 2048346 2048374 -141738081 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr12 2050148 2050178 -141736277 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr12 2050271 2050306 -141736149 + AT_rich Low_complexity Low_complexity 1 35 0 180 302 60 9 chr12 2052297 2052413 -141734042 + L2 LINE L2 2148 2269 -1045 248 297 126 50 chr12 2052883 2053040 -141733415 + L2 LINE L2 2866 3040 -232 1264 128 33 83 chr12 2053040 2053282 -141733173 + MER30 DNA MER1_type 1 230 0 248 297 126 50 chr12 2053282 2053306 -141733149 + L2 LINE L2 3040 3061 -211 2133 88 27 27 chr12 2053767 2054061 -141732394 + AluSg SINE Alu 1 294 -16 1197 151 11 0 chr12 2055567 2055753 -141730702 + MER5A DNA MER1_type 1 188 -1 1763 125 14 61 chr12 2055950 2056268 -141730187 + AluJo SINE Alu 1 304 0 2349 84 0 0 chr12 2057275 2057574 -141728881 + AluSq SINE Alu 1 299 -14 249 225 42 42 chr12 2058149 2058220 -141728235 - MER5B DNA MER1_type -21 157 87 616 158 31 8 chr12 2058327 2058454 -141728001 - MER20 DNA MER1_type -89 130 1 4294 184 34 58 chr12 2061406 2062539 -141723916 + Charlie1a DNA MER1_type 1 1106 -349 491 110 7 208 chr12 2062560 2062648 -141723807 + Charlie1a DNA MER1_type 1333 1379 -1382 2382 83 0 0 chr12 2062648 2062948 -141723507 + AluSg SINE Alu 1 300 -10 491 110 7 208 chr12 2062948 2063013 -141723442 + Charlie1a DNA MER1_type 1379 1455 0 379 225 0 0 chr12 2063390 2063470 -141722985 + MER112 DNA MER1_type 172 251 -9 193 273 18 0 chr12 2064272 2064327 -141722128 + L2 LINE L2 2919 2974 -298 1262 153 0 5 chr12 2064622 2064855 -141721600 - AluJo SINE Alu 0 316 85 236 167 0 0 chr12 2064863 2064911 -141721544 - Alu SINE Alu -170 132 85 277 261 14 43 chr12 2064990 2065059 -141721396 + L2 LINE L2 3194 3260 -12 201 308 0 0 chr12 2066517 2066595 -141719860 + (TTA)n Simple_repeat Simple_repeat 2 79 0 196 246 18 70 chr12 2066669 2066726 -141719729 - L3 LINE CR1 -130 1447 1394 2369 93 0 7 chr12 2067387 2067697 -141718758 + AluSq SINE Alu 1 308 -5 212 213 363 0 chr12 2068019 2068099 -141718356 + MIR3 SINE MIR 93 201 -7 1146 176 40 0 chr12 2068829 2069028 -141717427 + MER58A DNA MER1_type 4 210 -14 224 323 46 92 chr12 2069070 2069200 -141717255 - L2 LINE L2 -22 3250 3127 690 293 59 36 chr12 2069594 2069847 -141716608 + MIR SINE MIR 1 259 -3 636 329 12 0 chr12 2070944 2071108 -141715347 - L2 LINE L2 0 3272 3107 200 200 67 0 chr12 2072017 2072062 -141714393 - MIR3 SINE MIR -54 154 107 415 240 143 19 chr12 2072111 2072265 -141714190 + MER5B DNA MER1_type 6 178 0 511 290 124 11 chr12 2072289 2072475 -141713980 + MIR SINE MIR 43 249 -13 280 229 49 0 chr12 2072500 2072561 -141713894 - MIR3 SINE MIR -132 76 13 349 244 0 191 chr12 2072715 2072883 -141713572 - L2 LINE L2 -1 3271 3136 2361 90 3 3 chr12 2072945 2073246 -141713209 - AluSq SINE Alu -8 305 5 580 217 101 0 chr12 2073320 2073458 -141712997 - MER5B DNA MER1_type -26 152 1 215 298 156 14 chr12 2073556 2073697 -141712758 - L2 LINE L2 -530 2784 2624 355 189 27 0 chr12 2074497 2074571 -141711884 - MER58 DNA MER1_type -106 109 34 1626 231 2 33 chr12 2074586 2075010 -141711445 + MER63 DNA MER1_type 649 1059 -2 1919 161 13 7 chr12 2075700 2076010 -141710445 + AluJo SINE Alu 1 312 0 620 153 42 7 chr12 2076010 2076154 -141710301 + GA-rich Low_complexity Low_complexity 4 152 0 212 242 15 0 chr12 2076527 2076593 -141709862 + CT-rich Low_complexity Low_complexity 1 67 0 773 284 28 24 chr12 2076688 2076942 -141709513 - MIR SINE MIR 0 262 8 545 302 174 12 chr12 2077265 2077507 -141708948 - L3 LINE CR1 -8 1569 1289 439 219 57 49 chr12 2077719 2077842 -141708613 - MIR SINE MIR -108 154 31 1010 207 137 43 chr12 2077853 2077918 -141708537 - MLT1A1 LTR MaLR -5 360 303 2353 89 0 3 chr12 2077918 2078211 -141708244 + AluSq SINE Alu 2 293 -20 1010 207 137 43 chr12 2078211 2078474 -141707981 - MLT1A1 LTR MaLR -62 303 1 3187 155 11 71 chr12 2078478 2078984 -141707471 + MER6A DNA MER2_type 1 461 -404 1805 142 68 4 chr12 2078984 2079265 -141707190 - AluJo SINE Alu -13 299 1 3187 155 11 71 chr12 2079265 2079402 -141707053 + MER6A DNA MER2_type 461 605 0 810 222 66 0 chr12 2079467 2079634 -141706821 + MER45A DNA AcHobo 1 178 0 211 111 0 28 chr12 2080442 2080478 -141705977 + MIR SINE MIR 21 55 -153 540 217 217 11 chr12 2080869 2081182 -141705273 - MLT1J LTR MaLR -23 488 82 472 264 78 9 chr12 2084895 2085044 -141701411 - MIR3 SINE MIR -48 160 1 502 235 136 128 chr12 2085151 2085402 -141701053 + MIR SINE MIR 10 262 0 196 186 0 102 chr12 2085595 2085654 -141700801 - MIR SINE MIR -63 145 93 1775 185 46 0 chr12 2085791 2086142 -141700313 - L1MB5 LINE L1 0 6174 5808 269 273 30 0 chr12 2088165 2088231 -141698224 + MER5B DNA MER1_type 17 84 -94 396 82 0 0 chr12 2088488 2088549 -141697906 + (TG)n Simple_repeat Simple_repeat 2 62 0 262 0 53 0 chr12 2090154 2090192 -141696263 + (CAA)n Simple_repeat Simple_repeat 2 41 0 307 351 153 4 chr12 2090297 2090565 -141695890 + L3 LINE CR1 954 1261 -316 693 234 85 51 chr12 2090571 2090806 -141695649 - MIR SINE MIR 0 262 20 430 364 30 4 chr12 2090820 2091051 -141695404 + L3 LINE CR1 1268 1504 -73 243 275 150 33 chr12 2091235 2091355 -141695100 - L2 LINE L2 0 3313 3180 22 94 0 0 chr12 2091630 2091694 -141694761 + GC_rich Low_complexity Low_complexity 1 64 0 654 337 53 16 chr12 2092203 2092446 -141694009 - L3b LINE CR1 -7 1576 1325 2111 113 24 0 chr12 2092993 2093284 -141693171 - AluSg SINE Alu -12 298 1 685 214 151 0 chr12 2094264 2094423 -141692032 + MER5A DNA MER1_type 7 189 0 491 335 77 24 chr12 2095990 2096277 -141690178 - L2 LINE L2 0 3272 2971 325 319 126 28 chr12 2097104 2097286 -141689169 + L3b LINE CR1 1249 1448 -135 285 370 0 10 chr12 2097380 2097480 -141688975 - MIR SINE MIR -116 146 48 2539 71 0 0 chr12 2097788 2098096 -141688359 - AluY SINE Alu -3 308 1 2143 216 18 11 chr12 2098416 2098986 -141687469 - Charlie2 DNA MER1_type -18 2844 2271 488 272 37 49 chr12 2099080 2099326 -141687129 - Charlie2 DNA MER1_type -2461 321 79 544 335 50 30 chr12 2099789 2100150 -141686305 - MLT1I LTR MaLR -2 407 40 2948 13 0 0 chr12 2100160 2100475 -141685980 - AluYb8 SINE Alu -3 315 1 255 325 18 74 chr12 2101891 2102054 -141684401 + MIR3 SINE MIR 17 170 -38 1184 251 147 16 chr12 2102277 2102720 -141683735 + MLT1D LTR MaLR 5 505 0 236 333 70 18 chr12 2102891 2103005 -141683450 - MIR SINE MIR -48 214 95 319 302 88 25 chr12 2103606 2103765 -141682690 + MIR SINE MIR 12 180 -82 192 279 0 0 chr12 2103771 2103814 -141682641 + L2 LINE L2 3270 3312 -1 612 296 104 5 chr12 2103819 2104039 -141682416 - MIR SINE MIR -1 261 20 248 87 22 43 chr12 2104110 2104156 -141682299 - L2 LINE L2 -8 3305 3261 650 274 46 13 chr12 2104213 2104775 -141681680 - MLT2F LTR ERVL 0 663 1 189 0 0 0 chr12 2105373 2105394 -141681061 + (GAA)n Simple_repeat Simple_repeat 1 21 0 282 304 101 9 chr12 2105471 2105688 -141680767 - L1ME4a LINE L1 -117 6004 5768 830 238 39 15 chr12 2105692 2105898 -141680557 + MIR SINE MIR 14 224 -38 321 268 39 1 chr12 2105906 2105993 -141680462 - L1ME4a LINE L1 -347 5774 5684 195 302 79 0 chr12 2106054 2106117 -141680338 - L2 LINE L2 -2 3270 3203 872 240 39 31 chr12 2106743 2106997 -141679458 + MIR SINE MIR 7 262 0 2509 227 125 43 chr12 2107422 2108486 -141677969 - L2 LINE L2 0 3313 2146 217 230 48 36 chr12 2109012 2109177 -141677278 + (CGCGG)n Simple_repeat Simple_repeat 2 168 0 27 29 0 0 chr12 2109204 2109238 -141677217 + GC_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr12 2109271 2109307 -141677148 + GC_rich Low_complexity Low_complexity 1 36 0 22 80 0 0 chr12 2109322 2109372 -141677083 + GC_rich Low_complexity Low_complexity 1 50 0 224 0 40 80 chr12 2109414 2109464 -141676991 + (CGGG)n Simple_repeat Simple_repeat 1 48 0 31 44 0 0 chr12 2109548 2109593 -141676862 + GC_rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr12 2109692 2109735 -141676720 + GC_rich Low_complexity Low_complexity 1 43 0 23 114 0 0 chr12 2110194 2110308 -141676147 + GC_rich Low_complexity Low_complexity 1 114 0 32 114 0 0 chr12 2110478 2110636 -141675819 + GC_rich Low_complexity Low_complexity 1 158 0 504 59 0 0 chr12 2112691 2112759 -141673696 + (TG)n Simple_repeat Simple_repeat 2 69 0 194 227 67 53 chr12 2113009 2113084 -141673371 + L3 LINE CR1 115 190 -1387 225 247 173 0 chr12 2116213 2116294 -141670161 - MIR3 SINE MIR -6 202 108 257 274 0 74 chr12 2117657 2117752 -141668703 + MIR SINE MIR 124 211 -51 689 288 56 13 chr12 2118734 2118967 -141667488 - MIR SINE MIR 0 262 20 597 176 5 0 chr12 2119442 2119644 -141666811 - L1MB7 LINE L1 -1 6183 5945 2250 102 3 0 chr12 2119674 2119969 -141666486 - AluSc SINE Alu -13 296 1 1395 162 30 0 chr12 2120191 2120467 -141665988 - L1MB5 LINE L1 -298 5876 5589 205 343 53 91 chr12 2121956 2122653 -141663802 - L2 LINE L2 -2 3270 2599 345 125 0 0 chr12 2123970 2124026 -141662429 + (TG)n Simple_repeat Simple_repeat 2 57 0 1654 181 52 0 chr12 2126338 2126625 -141659830 - AluJo SINE Alu -10 302 1 470 289 93 29 chr12 2126904 2127369 -141659086 - L1MEd LINE L1 -746 1744 1226 312 148 25 25 chr12 2127371 2127452 -141659003 + CT-rich Low_complexity Low_complexity 1 81 0 707 185 11 11 chr12 2127465 2127643 -141658812 + CT-rich Low_complexity Low_complexity 1 178 0 378 120 0 0 chr12 2127661 2127736 -141658719 + (CCTG)n Simple_repeat Simple_repeat 2 76 0 1516 183 18 35 chr12 2127761 2128046 -141658409 - AluJb SINE Alu -32 280 1 500 256 67 41 chr12 2128051 2128320 -141658135 - L1MEd LINE L1 -4940 1179 904 215 222 14 42 chr12 2128482 2128554 -141657901 + MIR SINE MIR 147 216 -46 206 116 23 0 chr12 2128690 2128733 -141657722 + (TA)n Simple_repeat Simple_repeat 1 44 0 1971 143 0 3 chr12 2128733 2129020 -141657435 - AluSx SINE Alu -26 286 1 180 339 0 0 chr12 2129348 2129410 -141657045 - L2 LINE L2 -3 3310 3249 210 336 96 39 chr12 2129437 2129541 -141656914 - L2 LINE L2 -9 3263 3154 533 209 32 25 chr12 2130370 2130528 -141655927 + MER117 DNA MER1_type 5 163 -34 261 364 98 17 chr12 2130829 2131002 -141655453 - MIR SINE MIR 0 262 76 550 294 0 7 chr12 2131943 2132086 -141654369 - MIR SINE MIR -118 144 3 256 131 16 16 chr12 2132988 2133049 -141653406 + CT-rich Low_complexity Low_complexity 4 64 0 328 308 9 9 chr12 2133982 2134089 -141652366 - MIR SINE MIR 0 262 156 283 310 26 9 chr12 2134177 2134293 -141652162 + L1MEd LINE L1 265 382 -5737 1944 160 31 46 chr12 2134449 2134520 -141651935 + L1MB1 LINE L1 5716 5787 -381 1849 187 19 21 chr12 2134520 2134895 -141651560 + MLT1A2 LTR MaLR 1 374 0 1944 160 31 46 chr12 2134895 2135222 -141651233 + L1MB1 LINE L1 5787 6118 -50 5122 27 0 3 chr12 2135222 2135815 -141650640 + L1PA4 LINE L1 5565 6155 0 1944 160 31 46 chr12 2135815 2135829 -141650626 + L1MB1 LINE L1 6118 6131 -37 1864 171 30 22 chr12 2135829 2136191 -141650264 - MLT1A1 LTR MaLR 0 365 1 1944 160 31 46 chr12 2136191 2136230 -141650225 + L1MB1 LINE L1 6131 6168 0 619 278 70 67 chr12 2136356 2136499 -141649956 + L1MEd LINE L1 678 819 -1671 2239 135 0 3 chr12 2136499 2136811 -141649644 + AluSx SINE Alu 1 311 -1 619 278 70 67 chr12 2136811 2136840 -141649615 + L1MEd LINE L1 819 846 -1644 2508 93 0 0 chr12 2136840 2137151 -141649304 + AluY SINE Alu 1 311 0 619 278 70 67 chr12 2137151 2137809 -141648646 + L1MEd LINE L1 846 1615 -875 2515 57 0 3 chr12 2137809 2138105 -141648350 + AluY SINE Alu 1 295 -16 619 278 70 67 chr12 2138105 2138185 -141648270 + L1MEd LINE L1 1615 1693 -797 350 255 142 21 chr12 2138429 2138570 -141647885 - MIR SINE MIR 0 262 105 265 290 21 21 chr12 2138666 2138759 -141647696 - MIR SINE MIR -156 106 14 182 218 182 0 chr12 2140061 2140116 -141646339 + MIR SINE MIR 84 148 -114 321 232 146 0 chr12 2140374 2140456 -141645999 - L2 LINE L2 -2 3311 3218 22 35 0 0 chr12 2140513 2140542 -141645913 + AT_rich Low_complexity Low_complexity 1 29 0 2672 291 52 23 chr12 2140704 2141685 -141644770 - L3 LINE CR1 -44 1533 525 665 343 141 36 chr12 2141775 2142771 -141643684 + L2 LINE L2 2159 3272 0 1200 238 63 58 chr12 2143032 2143460 -141642995 - MLT1J2 LTR MaLR 0 450 21 247 290 174 61 chr12 2143994 2144322 -141642133 + L3b LINE CR1 1211 1575 -8 258 323 56 71 chr12 2144448 2144646 -141641809 + MIR SINE MIR 24 218 -44 812 263 123 4 chr12 2144908 2145136 -141641319 + MIR SINE MIR 8 262 0 370 250 70 62 chr12 2145883 2146011 -141640444 - L2 LINE L2 -8 3264 3136 4084 140 62 35 chr12 2146137 2146273 -141640182 - L1MB2 LINE L1 -2 6169 6038 2263 97 17 0 chr12 2146273 2146573 -141639882 + AluY SINE Alu 1 305 -6 4084 140 62 35 chr12 2146573 2146831 -141639624 - L1MB2 LINE L1 -133 6038 5788 2525 91 0 0 chr12 2146831 2147138 -141639317 - AluSx SINE Alu -5 307 1 4084 140 62 35 chr12 2147138 2147571 -141638884 - L1MB2 LINE L1 -383 5788 5319 1853 182 173 18 chr12 2147831 2148265 -141638190 - MLT1D LTR MaLR 0 505 5 312 337 46 11 chr12 2148355 2148530 -141637925 + MIR3 SINE MIR 10 190 -18 466 269 17 8 chr12 2149247 2149366 -141637089 - MIR SINE MIR -90 172 53 182 288 206 0 chr12 2149863 2149936 -141636519 - L2 LINE L2 -21 3251 3164 185 148 148 19 chr12 2150596 2150650 -141635805 - MIR SINE MIR -94 168 108 595 235 25 24 chr12 2151053 2151226 -141635229 - MIR3 SINE MIR 0 208 34 297 271 127 25 chr12 2151540 2151658 -141634797 - MIR SINE MIR -132 130 1 28290 23 0 0 chr12 2152333 2156599 -141629856 + L1PA2 LINE L1 1908 6548 -1 195 42 0 0 chr12 2156689 2156713 -141629742 + (A)n Simple_repeat Simple_repeat 1 24 0 278 229 73 31 chr12 2156716 2156812 -141629643 + MIR SINE MIR 163 262 0 428 330 73 18 chr12 2157902 2158120 -141628335 + MIR SINE MIR 5 234 -28 2494 66 0 3 chr12 2158192 2158495 -141627960 + AluY SINE Alu 1 302 -9 330 288 128 40 chr12 2158663 2158788 -141627667 + MIR3 SINE MIR 15 150 -58 422 270 10 0 chr12 2158821 2158921 -141627534 - L2 LINE L2 -5 3308 3208 250 158 0 0 chr12 2159067 2159105 -141627350 - MIR SINE MIR -146 116 79 210 290 14 14 chr12 2159151 2159220 -141627235 + MER5B DNA MER1_type 43 111 -67 306 280 43 0 chr12 2160068 2160161 -141626294 - MIR SINE MIR -32 230 134 493 283 96 0 chr12 2161160 2161326 -141625129 + MER5A DNA MER1_type 6 187 -2 229 337 46 62 chr12 2161627 2162131 -141624324 + L2 LINE L2 1926 2421 -893 369 0 0 0 chr12 2162752 2162793 -141623662 + (CA)n Simple_repeat Simple_repeat 1 41 0 734 186 44 50 chr12 2162938 2163104 -141623351 - MIR SINE MIR 0 262 98 287 260 89 107 chr12 2163404 2163505 -141622950 - MIR SINE MIR -76 186 88 2539 73 0 0 chr12 2163505 2163808 -141622647 - AluY SINE Alu -8 303 1 287 260 89 107 chr12 2163808 2163875 -141622580 - MIR SINE MIR -174 88 21 228 241 107 88 chr12 2163886 2164045 -141622410 + MER5A DNA MER1_type 1 159 -19 205 332 37 32 chr12 2164110 2164300 -141622155 - L2 LINE L2 -1050 2264 2074 490 252 8 0 chr12 2164561 2164692 -141621763 - L1MB7 LINE L1 -12 6172 6041 369 0 0 0 chr12 2166205 2166246 -141620209 + (CA)n Simple_repeat Simple_repeat 2 42 0 627 240 137 11 chr12 2167668 2167843 -141618612 - MIR3 SINE MIR -3 205 9 188 254 18 36 chr12 2167885 2167940 -141618515 - L3 LINE CR1 -7 1570 1517 236 313 10 31 chr12 2168056 2168152 -141618303 - MIR SINE MIR -149 113 20 551 227 123 19 chr12 2168286 2168440 -141618015 - MIR SINE MIR -91 171 2 349 293 104 12 chr12 2169283 2169447 -141617008 + MIR SINE MIR 22 202 -6 2059 127 0 7 chr12 2169611 2169916 -141616539 - AluSx SINE Alu 0 303 1 283 272 136 8 chr12 2170106 2170231 -141616224 + MIR3 SINE MIR 38 178 -30 2228 84 20 17 chr12 2170233 2170531 -141615924 + AluY SINE Alu 1 299 -12 303 302 126 6 chr12 2170673 2170832 -141615623 + MER5B DNA MER1_type 1 178 0 526 252 22 7 chr12 2171113 2171248 -141615207 - MER5A DNA MER1_type -34 155 19 186 119 143 24 chr12 2172256 2172298 -141614157 + MIR3 SINE MIR 137 183 -25 717 229 75 87 chr12 2172353 2172886 -141613569 + MLT1G LTR MaLR 1 588 -2 258 204 0 0 chr12 2173886 2173935 -141612520 + MLT1K LTR MaLR 525 573 -15 263 299 0 13 chr12 2174110 2174187 -141612268 + MER117 DNA MER1_type 122 197 0 467 226 9 19 chr12 2176080 2176186 -141610269 + MER3 DNA MER1_type 1 105 -104 670 281 98 62 chr12 2177113 2177558 -141608897 + L2 LINE L2 2575 3040 -232 737 248 14 37 chr12 2178771 2178985 -141607470 + MER3 DNA MER1_type 1 209 0 10005 75 15 1 chr12 2182213 2184313 -141602142 + L1PA7 LINE L1 4034 6152 -2 194 281 225 0 chr12 2184556 2184645 -141601810 + L2 LINE L2 3200 3308 -5 335 310 71 7 chr12 2184758 2184913 -141601542 + L2 LINE L2 3149 3313 0 486 311 52 35 chr12 2185589 2185871 -141600584 + L1ME4a LINE L1 5635 5911 -210 1357 126 215 19 chr12 2185871 2186132 -141600323 - AluJb SINE Alu 0 312 1 1562 136 26 49 chr12 2186132 2186396 -141600059 - AluJb SINE Alu -15 297 40 486 311 52 35 chr12 2186396 2186407 -141600048 + L1ME4a LINE L1 5911 5920 -201 2279 96 0 63 chr12 2186407 2186739 -141599716 - AluSx SINE Alu -1 311 1 486 311 52 35 chr12 2186739 2186790 -141599665 + L1ME4a LINE L1 5920 5987 -134 866 283 14 5 chr12 2186834 2187053 -141599402 + MIR SINE MIR 2 222 -40 298 321 30 15 chr12 2187938 2188069 -141598386 + MIR SINE MIR 79 211 -51 507 357 33 0 chr12 2188777 2188959 -141597496 + MIR3 SINE MIR 21 208 0 4004 148 35 20 chr12 2189269 2189457 -141596998 + L1MB4 LINE L1 5415 5599 -581 2573 58 0 13 chr12 2189457 2189768 -141596687 + AluY SINE Alu 1 307 -4 4004 148 35 20 chr12 2189768 2190333 -141596122 + L1MB4 LINE L1 5599 6179 -1 305 294 64 9 chr12 2190833 2190942 -141595513 + L2 LINE L2 3155 3269 -3 13666 49 77 4 chr12 2191010 2192842 -141593613 - L1P LINE L1 -4179 1967 2 657 235 29 0 chr12 2192861 2192997 -141593458 - MIR SINE MIR -117 145 6 189 225 96 88 chr12 2193300 2193411 -141593044 + MER5B DNA MER1_type 21 122 -56 473 299 61 18 chr12 2193710 2193903 -141592552 + MIR SINE MIR 11 211 -51 728 203 101 0 chr12 2193948 2194086 -141592369 + AluJo SINE Alu 125 276 -36 1284 76 5 5 chr12 2195197 2195381 -141591074 + MSTB1 LTR MaLR 249 432 0 1592 206 28 30 chr12 2195536 2195934 -141590521 - MLT1C LTR MaLR 0 467 71 291 246 0 0 chr12 2196877 2196934 -141589521 + L2 LINE L2 3255 3311 -2 427 310 0 49 chr12 2196980 2197183 -141589272 + MIR3 SINE MIR 1 193 -15 485 285 112 75 chr12 2197227 2197719 -141588736 - L2 LINE L2 0 3313 2804 6441 137 37 44 chr12 2198725 2199496 -141586959 + Tigger3b DNA MER2_type 1 763 -2265 2293 86 27 0 chr12 2199496 2199788 -141586667 - AluSx SINE Alu -12 300 1 6441 137 37 44 chr12 2199788 2200254 -141586201 + Tigger3b DNA MER2_type 763 1230 -1 395 232 196 9 chr12 2200952 2201064 -141585391 - L2 LINE L2 -1 3312 3180 275 274 0 0 chr12 2202088 2202150 -141584305 - L2 LINE L2 0 3272 3211 396 278 61 28 chr12 2202408 2202588 -141583867 + MIR SINE MIR 77 262 0 192 246 53 18 chr12 2202821 2202878 -141583577 - L2 LINE L2 -243 3070 3012 1528 161 19 8 chr12 2205072 2205332 -141581123 - AluJo SINE Alu -16 296 34 365 229 0 62 chr12 2207688 2207784 -141578671 - MIR3 SINE MIR -11 197 108 928 263 92 4 chr12 2208721 2209002 -141577453 + MLT1J LTR MaLR 1 306 -205 23 33 0 0 chr12 2209199 2209229 -141577226 + AT_rich Low_complexity Low_complexity 1 30 0 1725 102 57 3 chr12 2209825 2210108 -141576347 - L1MB3 LINE L1 0 6183 5886 223 363 0 0 chr12 2211787 2211867 -141574588 - MIR3 SINE MIR -19 189 110 209 308 19 75 chr12 2211866 2211973 -141574482 + MIR3 SINE MIR 81 181 -27 * 312 279 21 21 chr12 2212513 2212653 -141573802 + L1ME3A LINE L1 5817 5956 -214 308 226 32 0 chr12 2212894 2212987 -141573468 + HAL1 LINE L1 45 140 -2367 2450 263 114 33 chr12 2213433 2213631 -141572824 + HAL1 LINE L1 154 335 -2172 881 141 49 5 chr12 2213631 2213815 -141572640 + L1MA8 LINE L1 6098 6289 -2 2450 263 114 33 chr12 2213815 2214817 -141571638 + HAL1 LINE L1 335 1451 -1056 1389 148 14 5 chr12 2214817 2215033 -141571422 + AluJb SINE Alu 1 218 -94 1058 217 84 49 chr12 2215047 2215393 -141571062 + HAL1 LINE L1 1427 1784 -723 606 268 156 22 chr12 2215417 2215731 -141570724 + HAL1 LINE L1 2129 2484 -23 1870 129 11 11 chr12 2215732 2216012 -141570443 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr12 2216012 2216035 -141570420 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2370 99 6 6 chr12 2216111 2216424 -141570031 - AluSq SINE Alu 0 313 1 204 245 0 19 chr12 2216467 2216520 -141569935 - L2 LINE L2 0 3313 3262 239 188 146 0 chr12 2216807 2216855 -141569600 + L2 LINE L2 3213 3267 -5 2309 113 0 0 chr12 2217331 2217640 -141568815 - AluSg SINE Alu -1 309 1 215 132 0 26 chr12 2218563 2218601 -141567854 + MIR SINE MIR 117 153 -109 1758 95 4 22 chr12 2219510 2219742 -141566713 + AluSp SINE Alu 74 301 -12 453 326 18 2 chr12 2219797 2219980 -141566475 - MIR SINE MIR -63 145 5 475 217 217 31 chr12 2220839 2221000 -141565455 + MIR3 SINE MIR 3 193 -15 561 301 119 4 chr12 2221177 2221403 -141565052 + MIR SINE MIR 3 254 -8 190 255 92 78 chr12 2221962 2222103 -141564352 + MIR3 SINE MIR 6 148 -60 204 40 0 0 chr12 2222248 2222273 -141564182 + (TG)n Simple_repeat Simple_repeat 2 26 0 521 232 18 61 chr12 2223105 2223269 -141563186 + MIR SINE MIR 105 261 -1 180 320 301 4 chr12 2223579 2223838 -141562617 - L2 LINE L2 -1 3271 2936 1778 256 82 25 chr12 2223839 2224484 -141561971 - L1ME LINE L1 -5327 743 62 237 360 98 12 chr12 2224650 2224814 -141561641 - L2 LINE L2 -480 2834 2657 316 222 14 14 chr12 2224847 2224919 -141561536 + MIR3 SINE MIR 121 192 -16 316 302 16 62 chr12 2226510 2226639 -141559816 + L2 LINE L2 3132 3254 -18 211 314 29 0 chr12 2228020 2228090 -141558365 + MIR SINE MIR 63 134 -128 497 333 144 17 chr12 2228122 2228470 -141557985 - L2 LINE L2 -1 3312 2921 310 253 50 30 chr12 2228567 2228666 -141557789 + MLT1J1 LTR MaLR 346 446 0 402 217 12 0 chr12 2230254 2230337 -141556118 + MIR SINE MIR 92 175 -87 291 284 57 0 chr12 2230384 2230472 -141555983 + MIR SINE MIR 79 171 -91 1618 242 48 95 chr12 2230937 2231140 -141555315 - L1MC5 LINE L1 -27 7934 7723 2550 145 9 53 chr12 2231140 2231594 -141554861 - Tigger2a DNA MER2_type 0 434 1 1618 242 48 95 chr12 2231594 2232380 -141554075 - L1MC5 LINE L1 -238 7723 6991 777 258 146 59 chr12 2232398 2233012 -141553443 - L2 LINE L2 0 3313 2645 620 143 18 42 chr12 2233981 2234149 -141552306 + CT-rich Low_complexity Low_complexity 2 165 0 2043 130 30 0 chr12 2234157 2234457 -141551998 - AluSx SINE Alu -3 309 1 1966 156 0 0 chr12 2235300 2235605 -141550850 + AluSx SINE Alu 1 305 0 254 258 30 0 chr12 2235956 2236022 -141550433 - L3 LINE CR1 -2 1575 1508 318 320 37 29 chr12 2237169 2237411 -141549044 + MIR3 SINE MIR 1 246 -16 232 349 132 13 chr12 2237444 2237596 -141548859 - L3 LINE CR1 -584 993 824 181 286 5 0 chr12 2237707 2237775 -141548680 + MIR SINE MIR 74 143 -65 527 312 168 71 chr12 2237880 2238626 -141547829 + L3 LINE CR1 709 1526 -51 216 0 0 0 chr12 2238652 2238676 -141547779 + (A)n Simple_repeat Simple_repeat 1 24 0 233 173 30 29 chr12 2239468 2239535 -141546920 + MIR SINE MIR 103 167 -41 922 141 0 7 chr12 2239558 2239693 -141546762 - AluJo SINE Alu -178 134 1 194 271 0 0 chr12 2239720 2239768 -141546687 + MIR SINE MIR 183 230 -32 282 290 70 37 chr12 2239905 2240044 -141546411 - MER5B DNA MER1_type -30 159 6 415 270 51 15 chr12 2241145 2241282 -141545173 - L2 LINE L2 0 3313 3172 1833 161 37 45 chr12 2241913 2242293 -141544162 + MLT1B LTR MaLR 4 380 -10 612 279 132 5 chr12 2243209 2243428 -141543027 - MIR SINE MIR -13 249 3 341 309 71 42 chr12 2243641 2243809 -141542646 - MIR SINE MIR -44 218 46 2602 62 0 3 chr12 2245331 2245639 -141540816 + AluY SINE Alu 1 307 -4 284 348 127 17 chr12 2247029 2247210 -141539245 - L2 LINE L2 0 3272 3072 538 292 125 24 chr12 2247229 2247606 -141538849 - MLT1J2 LTR MaLR -23 427 13 363 278 0 0 chr12 2248034 2248210 -141538245 + (CA)n Simple_repeat Simple_repeat 2 177 0 411 272 0 0 chr12 2248241 2248421 -141538034 + (CA)n Simple_repeat Simple_repeat 1 180 0 498 256 0 0 chr12 2248435 2248615 -141537840 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 340 38 0 chr12 2249127 2249233 -141537222 + MIR SINE MIR 120 229 -33 2038 154 0 0 chr12 2249693 2249998 -141536457 + AluJb SINE Alu 1 305 -7 333 282 194 31 chr12 2250192 2250486 -141535969 - L3 LINE CR1 -58 1519 1178 700 172 7 17 chr12 2250625 2250916 -141535539 + CT-rich Low_complexity Low_complexity 1 288 0 182 263 0 0 chr12 2250950 2250988 -141535467 - L3 LINE CR1 -613 964 927 337 262 149 42 chr12 2251850 2252018 -141534437 + MIR3 SINE MIR 23 208 0 277 279 38 77 chr12 2252334 2252517 -141533938 - MIR3 SINE MIR -7 201 26 359 272 29 110 chr12 2255611 2255759 -141530696 + L2 LINE L2 2826 2944 -369 2560 153 23 16 chr12 2255759 2256190 -141530265 + Tigger2a DNA MER2_type 1 434 0 359 272 29 110 chr12 2256190 2256313 -141530142 + L2 LINE L2 2944 3075 -238 467 234 18 0 chr12 2256316 2256427 -141530028 + AluJb SINE Alu 196 308 -4 472 192 242 28 chr12 2256472 2256654 -141529801 + L2 LINE L2 3093 3313 0 676 278 90 45 chr12 2256804 2256858 -141529597 - L2 LINE L2 -6 3307 3257 1230 126 36 50 chr12 2256858 2257080 -141529375 + MER20 DNA MER1_type 1 219 0 676 278 90 45 chr12 2257080 2257381 -141529074 - L2 LINE L2 -56 3257 2936 235 227 247 0 chr12 2258159 2258256 -141528199 - MLT1L LTR MaLR 0 615 495 264 287 282 5 chr12 2258285 2258487 -141527968 - MLT1L LTR MaLR -340 275 18 285 325 49 8 chr12 2258682 2258805 -141527650 - MIR3 SINE MIR -5 203 76 2508 13 0 0 chr12 2260570 2260873 -141525582 - L1PA2 LINE L1 -599 5556 5254 5238 22 10 0 chr12 2260875 2261471 -141524984 + L1PA2 LINE L1 5554 6155 0 287 297 124 22 chr12 2261917 2262102 -141524353 + L2 LINE L2 3008 3211 -102 1658 176 47 9 chr12 2262223 2262564 -141523891 - MLT1A1 LTR MaLR -2 363 10 536 328 33 6 chr12 2262926 2263106 -141523349 + MIR SINE MIR 20 204 -58 1952 146 0 35 chr12 2264048 2264364 -141522091 + AluJo SINE Alu 1 305 -7 198 349 121 0 chr12 2264646 2264712 -141521743 - L2 LINE L2 -10 3262 3189 225 196 22 0 chr12 2266506 2266552 -141519903 + GA-rich Low_complexity Low_complexity 2 48 0 2455 78 0 7 chr12 2268235 2268541 -141517914 - AluSq SINE Alu -9 304 1 349 376 8 0 chr12 2269242 2269359 -141517096 - L2 LINE L2 -19 3253 3136 181 244 12 85 chr12 2270669 2270751 -141515704 + MIR3 SINE MIR 95 170 -38 493 309 90 5 chr12 2270785 2270973 -141515482 + MIR SINE MIR 59 262 0 410 278 56 16 chr12 2270959 2271085 -141515370 - MIR SINE MIR -47 215 85 * 659 199 33 50 chr12 2273120 2273301 -141513154 + MER5B DNA MER1_type 1 178 0 2990 145 4 16 chr12 2273461 2273971 -141512484 + L1MB3 LINE L1 5679 6182 -1 250 240 125 42 chr12 2274269 2274365 -141512090 + MIR SINE MIR 31 134 -128 242 282 115 58 chr12 2274534 2274708 -141511747 + MIR3 SINE MIR 18 201 -7 306 276 114 16 chr12 2276773 2276896 -141509559 + MIR SINE MIR 109 243 -19 702 282 181 25 chr12 2277272 2277946 -141508509 - L2 LINE L2 0 3313 2539 876 283 62 58 chr12 2278063 2278664 -141507791 + L1ME4a LINE L1 5492 6094 -27 396 236 30 125 chr12 2278810 2279018 -141507437 + MIR3 SINE MIR 5 191 -71 211 306 27 72 chr12 2280102 2280213 -141506242 - MIR SINE MIR -149 113 8 200 219 0 0 chr12 2280367 2280408 -141506047 + L2 LINE L2 3271 3311 -2 221 266 0 47 chr12 2280819 2280883 -141505572 + L2 LINE L2 2212 2272 -1042 272 323 68 38 chr12 2281522 2281655 -141504800 + MIR3 SINE MIR 5 141 -67 435 38 0 0 chr12 2282641 2282694 -141503761 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 173 37 105 chr12 2282796 2282971 -141503484 - MIR SINE MIR -62 146 35 359 291 212 20 chr12 2283860 2284063 -141502392 + MIR SINE MIR 15 256 -6 455 257 53 23 chr12 2284243 2284414 -141502041 + MER104 DNA MER2_type 5 180 0 503 258 230 10 chr12 2284759 2284968 -141501487 - MIR SINE MIR -6 256 2 221 294 110 32 chr12 2285604 2285774 -141500681 + MIR3 SINE MIR 6 187 -61 965 286 139 11 chr12 2285925 2286504 -141499951 - L2 LINE L2 -2 3311 2658 565 308 88 9 chr12 2287276 2287503 -141498952 - MIR SINE MIR 0 262 18 252 349 54 24 chr12 2287650 2287816 -141498639 + L2 LINE L2 3127 3297 -16 203 263 58 88 chr12 2287954 2288091 -141498364 - MIR SINE MIR -46 216 84 4270 199 33 60 chr12 2288451 2289624 -141496831 - L1MC4a LINE L1 -1 7807 6666 311 342 88 0 chr12 2289847 2289961 -141496494 - L2 LINE L2 0 3313 3190 617 261 113 15 chr12 2292394 2292589 -141493866 - MIR SINE MIR -21 241 28 471 315 146 0 chr12 2292688 2292853 -141493602 - MER5A DNA MER1_type 0 189 1 529 293 72 22 chr12 2295432 2295613 -141490842 + MIR SINE MIR 73 262 0 379 290 98 36 chr12 2297702 2297895 -141488560 - MIR SINE MIR -7 255 51 334 234 56 37 chr12 2298297 2298404 -141488051 + L2 LINE L2 3205 3313 0 364 284 147 10 chr12 2298885 2299082 -141487373 - Charlie8 DNA MER1_type -2128 289 66 208 189 27 0 chr12 2299266 2299303 -141487152 + MIR SINE MIR 117 154 -108 493 274 11 45 chr12 2299335 2299514 -141486941 - MIR SINE MIR -29 233 61 384 222 267 7 chr12 2300077 2300212 -141486243 + MIR SINE MIR 6 175 -87 199 162 0 0 chr12 2301986 2302023 -141484432 - MIR SINE MIR -118 144 108 926 218 88 70 chr12 2302138 2302469 -141483986 + MER46C DNA MER2_type 1 337 -1 511 335 138 0 chr12 2303003 2303227 -141483228 - MIR SINE MIR 0 262 8 662 291 69 5 chr12 2305315 2305518 -141480937 + MIR SINE MIR 47 262 0 825 293 16 8 chr12 2305595 2305784 -141480671 + MIR SINE MIR 8 201 -61 1059 221 8 55 chr12 2305784 2306019 -141480436 + MER58A DNA MER1_type 1 224 0 825 293 16 8 chr12 2306019 2306082 -141480373 + MIR SINE MIR 201 262 0 182 310 60 80 chr12 2306115 2306215 -141480240 - MIR SINE MIR -77 185 88 907 99 0 0 chr12 2306286 2306407 -141480048 - AluY SINE Alu -7 304 184 1921 54 0 0 chr12 2306407 2306628 -141479827 - AluY SINE Alu -90 221 1 379 292 108 0 chr12 2307233 2307353 -141479102 - L3b LINE CR1 -159 1424 1292 209 229 42 0 chr12 2308381 2308429 -141478026 + MIR SINE MIR 98 147 -61 218 239 292 9 chr12 2310120 2310233 -141476222 + MIR SINE MIR 112 256 -6 203 309 117 11 chr12 2310249 2310343 -141476112 - L3b LINE CR1 -157 1426 1323 199 269 154 13 chr12 2311265 2311343 -141475112 - MER5A DNA MER1_type -98 91 3 309 237 105 18 chr12 2311589 2311703 -141474752 + MIR SINE MIR 25 148 -114 248 318 65 0 chr12 2312230 2312337 -141474118 - L2 LINE L2 -6 3307 3194 399 346 15 8 chr12 2312659 2312792 -141473663 + MER5A DNA MER1_type 51 184 -5 209 264 194 39 chr12 2313256 2313385 -141473070 - MER5B DNA MER1_type -26 152 4 693 267 96 23 chr12 2313544 2313847 -141472608 - MLT1J1 LTR MaLR -113 333 9 2278 111 49 9 chr12 2313856 2314180 -141472275 - MER1B DNA MER1_type 0 337 1 271 167 117 0 chr12 2314393 2314453 -141472002 + MER116 DNA Mariner 1 67 -13 228 350 50 21 chr12 2315044 2315184 -141471271 - MIR SINE MIR -111 151 8 695 174 84 62 chr12 2315656 2315834 -141470621 + MER5A DNA MER1_type 1 182 -7 1139 169 0 11 chr12 2316257 2316441 -141470014 + AluJo SINE Alu 86 267 -45 1689 181 23 19 chr12 2316715 2317025 -141469430 + AluJo SINE Alu 1 311 -1 620 287 72 51 chr12 2317148 2317323 -141469132 + MIR SINE MIR 7 190 -72 1777 217 112 8 chr12 2317323 2317469 -141468986 - Charlie1b DNA MER1_type -2238 523 393 2496 83 0 6 chr12 2317469 2317782 -141468673 + AluY SINE Alu 1 311 0 1777 217 112 8 chr12 2317782 2318109 -141468346 - Charlie1b DNA MER1_type -2368 393 1 620 287 72 51 chr12 2318109 2318170 -141468285 + MIR SINE MIR 190 248 -14 744 296 72 41 chr12 2319363 2319782 -141466673 - L2 LINE L2 -4 3309 2878 * 1457 251 89 69 chr12 2319750 2320416 -141466039 - L2 LINE L2 -345 2969 2291 518 277 0 0 chr12 2320899 2321011 -141465444 - MIR3 SINE MIR -6 202 91 207 298 43 21 chr12 2322301 2322395 -141464060 + MIR3 SINE MIR 109 204 -4 240 287 82 25 chr12 2323141 2323263 -141463192 + MIR SINE MIR 91 219 -43 283 321 30 15 chr12 2323312 2323443 -141463012 + MIR SINE MIR 20 152 -110 323 310 9 35 chr12 2323596 2323709 -141462746 + L2 LINE L2 3150 3259 -13 340 253 14 42 chr12 2323797 2323927 -141462528 - MIR SINE MIR -21 187 63 225 178 74 28 chr12 2324073 2324148 -141462307 - MIR3 SINE MIR -54 154 77 795 288 77 29 chr12 2326181 2326660 -141459795 - LTR33 LTR ERVL -4 517 16 640 259 43 82 chr12 2327979 2328138 -141458317 + MIR SINE MIR 40 189 -73 1993 127 21 0 chr12 2328138 2328422 -141458033 + AluJo SINE Alu 1 290 -22 640 259 43 82 chr12 2328422 2328494 -141457961 + MIR SINE MIR 189 262 0 1179 167 5 28 chr12 2329584 2329799 -141456656 + MER2 DNA MER2_type 1 210 -135 24 53 0 0 chr12 2329826 2329864 -141456591 + AT_rich Low_complexity Low_complexity 1 38 0 471 278 35 58 chr12 2331109 2331282 -141455173 - MIR SINE MIR -74 188 20 243 150 0 0 chr12 2332510 2332550 -141453905 - MER2 DNA MER2_type -225 120 81 32 43 0 0 chr12 2332563 2332609 -141453846 + AT_rich Low_complexity Low_complexity 1 46 0 239 307 53 26 chr12 2332667 2332781 -141453674 - MIR SINE MIR -64 144 28 207 277 128 64 chr12 2333598 2333739 -141452716 - MIR SINE MIR -2 260 111 615 75 0 0 chr12 2333855 2333949 -141452506 + (CA)n Simple_repeat Simple_repeat 2 95 0 3235 215 54 23 chr12 2334780 2335718 -141450737 - L1ME1 LINE L1 -6 6229 5265 1087 192 19 27 chr12 2335723 2335983 -141450472 - L1ME1 LINE L1 -1276 4939 4682 651 254 10 24 chr12 2335982 2336187 -141450268 - L1ME1 LINE L1 -3651 2564 2363 * 25 31 0 0 chr12 2336237 2336269 -141450186 + AT_rich Low_complexity Low_complexity 1 32 0 1151 145 9 54 chr12 2336274 2336495 -141449960 - MER2 DNA MER2_type -134 211 1 514 243 87 0 chr12 2336496 2336658 -141449797 - L1ME1 LINE L1 -3850 2365 2213 207 267 28 57 chr12 2336883 2337059 -141449396 + (CTTTG)n Simple_repeat Simple_repeat 2 172 0 3035 254 60 19 chr12 2337290 2337488 -141448967 - L1ME1 LINE L1 -4150 2246 2058 1337 42 6 0 chr12 2337488 2337654 -141448801 - L1PA4 LINE L1 -6 6149 5983 3035 254 60 19 chr12 2337654 2338554 -141447901 - L1ME1 LINE L1 -4338 2058 1103 617 253 60 76 chr12 2339341 2339590 -141446865 - MLT1L LTR MaLR -125 490 246 337 301 184 7 chr12 2339591 2339727 -141446728 - MER5A DNA MER1_type -1 188 29 231 270 56 0 chr12 2339746 2339835 -141446620 - MLT1J LTR MaLR -317 194 101 294 256 0 39 chr12 2340072 2340150 -141446305 + L2 LINE L2 3193 3267 -5 335 227 21 62 chr12 2340207 2340304 -141446151 - MER5A DNA MER1_type -85 104 12 591 236 7 21 chr12 2341778 2341922 -141444533 - MER63 DNA MER1_type -68 768 1 186 176 194 46 chr12 2343139 2343247 -141443208 - L2 LINE L2 -38 3234 3111 283 288 0 0 chr12 2344114 2344187 -141442268 - MER5B DNA MER1_type -1 177 105 965 185 46 0 chr12 2344207 2344380 -141442075 - MER5A DNA MER1_type -6 183 3 382 311 0 0 chr12 2344393 2344483 -141441972 + MER5B DNA MER1_type 88 177 -1 221 288 51 0 chr12 2344513 2344572 -141441883 - L2 LINE L2 -6 3307 3246 213 276 102 20 chr12 2344571 2344669 -141441786 - MER5B DNA MER1_type -72 106 1 * 197 390 90 10 chr12 2345319 2345419 -141441036 + MIR SINE MIR 19 126 -82 1964 144 38 49 chr12 2345498 2345866 -141440589 + MLT1A1 LTR MaLR 1 364 -1 192 293 86 26 chr12 2346146 2346262 -141440193 - MIR SINE MIR -22 240 118 1771 188 93 19 chr12 2346452 2346882 -141439573 + MLT1C LTR MaLR 6 467 0 2077 113 11 3 chr12 2347865 2348183 -141438272 + AluSq SINE Alu 1 320 0 1526 218 61 57 chr12 2348752 2349229 -141437226 + MLT1H LTR MaLR 71 549 0 196 324 108 20 chr12 2349501 2349603 -141436852 + L2 LINE L2 3174 3284 -29 260 309 39 34 chr12 2350452 2350656 -141435799 - L1ME4a LINE L1 -179 5942 5738 198 271 51 0 chr12 2352086 2352145 -141434310 + MIR SINE MIR 26 87 -175 744 288 49 0 chr12 2352217 2352441 -141434014 - MIR SINE MIR -14 248 11 212 288 0 17 chr12 2352431 2352490 -141433965 + MIR SINE MIR 100 157 -105 * 285 311 0 0 chr12 2352636 2352710 -141433745 - L3 LINE CR1 -1 1576 1503 186 286 0 0 chr12 2352708 2352750 -141433705 + L3 LINE CR1 1513 1554 -23 * 319 240 60 0 chr12 2352991 2353091 -141433364 - MER117 DNA MER1_type -91 106 1 326 333 0 23 chr12 2353105 2353237 -141433218 + MER94 DNA DNA 6 134 0 2167 122 3 3 chr12 2353860 2354154 -141432301 - AluSc SINE Alu -15 294 1 414 0 0 0 chr12 2355636 2355682 -141430773 + (CA)n Simple_repeat Simple_repeat 2 47 0 2194 139 79 25 chr12 2356270 2356674 -141429781 + MSTB LTR MaLR 1 426 0 223 69 0 0 chr12 2356716 2356745 -141429710 + MIR SINE MIR 116 144 -64 232 167 24 0 chr12 2357201 2357243 -141429212 + CT-rich Low_complexity Low_complexity 2 44 0 300 359 31 8 chr12 2357742 2357870 -141428585 + L2 LINE L2 3134 3264 -8 375 258 106 23 chr12 2358279 2358411 -141428044 - MER5B DNA MER1_type -35 143 1 519 267 93 17 chr12 2358835 2359007 -141427448 + MIR SINE MIR 7 191 -71 645 216 76 29 chr12 2359161 2359332 -141427123 + MIR SINE MIR 8 186 -76 339 198 9 19 chr12 2359346 2359452 -141427003 + CT-rich Low_complexity Low_complexity 3 107 0 216 329 13 0 chr12 2359654 2359730 -141426725 - L2 LINE L2 -257 3056 2980 510 170 21 0 chr12 2361020 2361114 -141425341 + MER103 DNA DNA 12 107 -59 464 280 38 8 chr12 2361609 2361741 -141424714 - MIR SINE MIR -106 156 21 274 306 207 29 chr12 2361836 2362078 -141424377 - L2 LINE L2 -90 3182 2898 2284 102 3 0 chr12 2362468 2362763 -141423692 + AluSx SINE Alu 1 296 -16 186 216 82 93 chr12 2363327 2363424 -141423031 - MER5A DNA MER1_type -31 158 63 297 128 0 0 chr12 2364950 2364997 -141421458 + (CA)n Simple_repeat Simple_repeat 2 48 0 270 176 0 0 chr12 2365035 2365086 -141421369 + (CA)n Simple_repeat Simple_repeat 2 52 0 234 91 0 0 chr12 2365122 2365155 -141421300 + (CA)n Simple_repeat Simple_repeat 2 34 0 331 290 88 38 chr12 2366414 2366579 -141419876 - MIR3 SINE MIR -29 179 5 1081 182 182 28 chr12 2367065 2367351 -141419104 + L1MDa LINE L1 15 344 -6196 2188 156 8 0 chr12 2367364 2367716 -141418739 - L1MB3 LINE L1 -7 6176 5822 865 204 33 0 chr12 2367717 2367898 -141418557 - L1MDa LINE L1 -6014 526 340 874 119 106 0 chr12 2367903 2368054 -141418401 + L1M2 LINE L1 5318 5484 -696 229 179 0 0 chr12 2368118 2368157 -141418298 + L1M2 LINE L1 5446 5484 -807 7416 200 72 12 chr12 2368461 2370280 -141416175 + L1MDa LINE L1 529 2455 -4085 981 153 49 178 chr12 2370281 2370646 -141415809 + L1MD2 LINE L1 5917 6234 -8 423 258 11 0 chr12 2373187 2373280 -141413175 - MIR SINE MIR -109 153 60 916 203 64 30 chr12 2373981 2374217 -141412238 - MIR SINE MIR -9 253 10 296 235 126 42 chr12 2374241 2374360 -141412095 + MIR SINE MIR 64 192 -70 192 333 167 43 chr12 2375174 2375360 -141411095 - MIR SINE MIR -38 224 16 421 250 151 13 chr12 2375530 2375682 -141410773 + MIR SINE MIR 28 200 -62 2506 211 104 69 chr12 2375978 2376776 -141409679 + LTR1B LTR ERV1 1 826 0 1876 149 0 11 chr12 2380300 2380575 -141405880 + AluSx SINE Alu 35 306 -6 948 119 8 0 chr12 2380621 2380747 -141405708 + AluJb SINE Alu 156 282 -30 213 39 0 0 chr12 2380752 2380778 -141405677 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr12 2381298 2381332 -141405123 + AT_rich Low_complexity Low_complexity 1 34 0 1812 132 40 36 chr12 2381653 2381957 -141404498 - AluJo SINE Alu -3 309 5 380 296 89 7 chr12 2382123 2382258 -141404197 - MIR SINE MIR -44 218 73 283 167 0 0 chr12 2382290 2382332 -141404123 - MIR SINE MIR -162 100 59 931 238 15 0 chr12 2383794 2383996 -141402459 + MER3 DNA MER1_type 5 209 0 223 273 161 12 chr12 2384073 2384234 -141402221 + L2 LINE L2 1700 1884 -1430 499 353 118 22 chr12 2384259 2384886 -141401569 + L2 LINE L2 2004 2690 -624 238 307 188 0 chr12 2385281 2385382 -141401073 + L2 LINE L2 3136 3255 -17 265 231 0 46 chr12 2385449 2385514 -141400941 - MER94 DNA DNA -1 133 72 798 307 112 25 chr12 2386343 2386948 -141399507 + L2 LINE L2 1699 2356 -958 200 306 0 0 chr12 2387021 2387083 -141399372 + L2 LINE L2 2297 2358 -956 1662 145 51 77 chr12 2387315 2387729 -141398726 - L1MA9 LINE L1 0 6312 5910 199 308 132 26 chr12 2387884 2388139 -141398316 + L2 LINE L2 2742 3048 -224 225 0 0 0 chr12 2388223 2388248 -141398207 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 2207 134 0 0 chr12 2388275 2388582 -141397873 - AluSx SINE Alu -5 307 1 193 412 26 0 chr12 2388584 2388698 -141397757 + L2 LINE L2 3119 3235 -37 566 304 45 99 chr12 2388944 2389437 -141397018 - L2 LINE L2 0 3272 2807 293 206 31 72 chr12 2389441 2389538 -141396917 - MER5B DNA MER1_type -2 176 84 1591 191 87 17 chr12 2389558 2389913 -141396542 + MER63 DNA MER1_type 683 1062 0 419 262 19 0 chr12 2389913 2390020 -141396435 + MER5B DNA MER1_type 68 176 -2 212 303 72 80 chr12 2390024 2390288 -141396167 - L2 LINE L2 -514 2800 2539 228 325 60 0 chr12 2390514 2390597 -141395858 + MIR3 SINE MIR 116 203 -5 336 344 48 32 chr12 2391390 2391579 -141394876 + L3b LINE CR1 1110 1301 -282 205 364 61 8 chr12 2391687 2391819 -141394636 + L3b LINE CR1 1441 1579 -4 330 272 136 39 chr12 2392652 2392755 -141393700 - MIR SINE MIR -117 145 33 1572 219 73 20 chr12 2393270 2393723 -141392732 - Charlie4a DNA MER1_type -16 492 16 297 273 23 55 chr12 2394562 2394690 -141391765 - MIR3 SINE MIR -13 195 72 2824 0 0 0 chr12 2395740 2396035 -141390420 - AluYa5 SINE Alu -16 295 1 375 204 34 34 chr12 2396123 2396211 -141390244 + MIR3 SINE MIR 81 168 -40 439 146 11 11 chr12 2396916 2397005 -141389450 + GA-rich Low_complexity Low_complexity 3 91 0 713 229 24 6 chr12 2397106 2397276 -141389179 - MER97b DNA MER1_type? -876 177 5 438 294 32 46 chr12 2397949 2398167 -141388288 + MIR SINE MIR 11 225 -37 237 288 15 0 chr12 2399295 2399361 -141387094 - L2 LINE L2 -20 3252 3186 261 267 105 0 chr12 2399475 2399561 -141386894 - MIR SINE MIR -138 124 30 207 327 18 0 chr12 2399684 2399739 -141386716 - L2 LINE L2 -9 3263 3208 247 291 126 34 chr12 2400247 2400422 -141386033 - MIR3 SINE MIR -9 199 9 292 277 88 36 chr12 2400640 2400777 -141385678 + MIR SINE MIR 44 187 -75 481 248 20 46 chr12 2401692 2401845 -141384610 + MIR3 SINE MIR 49 197 -11 271 284 163 14 chr12 2401903 2402044 -141384411 + L3b LINE CR1 1179 1340 -243 511 270 196 48 chr12 2402058 2402546 -141383909 + L2 LINE L2 2682 3311 -2 194 353 37 37 chr12 2402557 2402693 -141383762 + L3b LINE CR1 1349 1484 -99 22 0 0 0 chr12 2403169 2403191 -141383264 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr12 2404038 2404060 -141382395 + (A)n Simple_repeat Simple_repeat 1 22 0 918 177 21 52 chr12 2404173 2404365 -141382090 + MER5A DNA MER1_type 4 189 0 1020 287 151 37 chr12 2404573 2405141 -141381314 - L3 LINE CR1 -204 1373 741 798 254 146 36 chr12 2405205 2405787 -141380668 - L1ME4a LINE L1 -209 6306 5661 411 281 112 49 chr12 2405793 2406078 -141380377 - L1ME4a LINE L1 -886 5654 5352 2330 90 0 17 chr12 2406081 2406381 -141380074 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr12 2406747 2406773 -141379682 + AT_rich Low_complexity Low_complexity 1 26 0 701 299 111 28 chr12 2407033 2407684 -141378771 - L1ME4a LINE L1 -1524 5016 4312 24 0 0 0 chr12 2407885 2407909 -141378546 + AT_rich Low_complexity Low_complexity 1 24 0 383 287 52 64 chr12 2408059 2408391 -141378064 - L1MDa LINE L1 -3750 2790 2459 1843 138 48 33 chr12 2408398 2408695 -141377760 + MER1B DNA MER1_type 1 305 -2407 2022 145 119 38 chr12 2408695 2409089 -141377366 + MSTA LTR MaLR 1 426 -2 1843 138 48 33 chr12 2409089 2409125 -141377330 + MER1B DNA MER1_type 305 339 0 28 95 0 0 chr12 2409390 2409474 -141376981 + AT_rich Low_complexity Low_complexity 1 84 0 352 274 84 0 chr12 2409549 2409644 -141376811 - MIR SINE MIR -140 122 20 226 274 98 44 chr12 2409653 2409857 -141376598 - HAL1b LINE L1 -617 731 517 844 339 200 3 chr12 2410140 2410704 -141375751 - L3 LINE CR1 -847 730 56 187 232 54 40 chr12 2413558 2413638 -141372817 + L2 LINE L2 3146 3270 -43 346 386 82 0 chr12 2413676 2413909 -141372546 - MIR SINE MIR -6 256 5 858 221 128 12 chr12 2414027 2414276 -141372179 - MLT1J LTR MaLR -8 503 226 251 281 130 36 chr12 2414296 2414488 -141371967 - MLT1J LTR MaLR -260 251 42 409 296 9 0 chr12 2415039 2415147 -141371308 - MIR3 SINE MIR -13 195 87 197 69 52 35 chr12 2415577 2415635 -141370820 + (GGGTG)n Simple_repeat Simple_repeat 1 59 0 362 277 9 27 chr12 2415649 2415761 -141370694 - MER5A DNA MER1_type -48 141 32 526 272 127 19 chr12 2415901 2416169 -141370286 - L3b LINE CR1 -178 1405 1109 22 0 0 0 chr12 2416225 2416247 -141370208 + AT_rich Low_complexity Low_complexity 1 22 0 227 296 69 15 chr12 2417279 2417380 -141369075 + MIR SINE MIR 57 160 -48 513 0 0 0 chr12 2417476 2417533 -141368922 + (CA)n Simple_repeat Simple_repeat 2 58 0 2365 96 3 0 chr12 2417793 2418096 -141368359 - AluSq SINE Alu -9 304 1 492 240 19 0 chr12 2418849 2418953 -141367502 + MIR SINE MIR 42 147 -115 186 318 35 35 chr12 2419095 2419180 -141367275 - MIR3 SINE MIR -114 94 10 204 245 19 0 chr12 2419697 2419750 -141366705 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 995 191 44 0 chr12 2419894 2420098 -141366357 - MER20 DNA MER1_type -3 216 4 189 294 15 15 chr12 2420178 2420246 -141366209 - L2 LINE L2 -220 3052 2985 202 322 17 17 chr12 2422557 2422672 -141363783 + L2 LINE L2 2992 3106 -166 212 254 34 0 chr12 2422700 2422759 -141363696 + L2 LINE L2 3247 3307 -6 1127 129 5 55 chr12 2424477 2424694 -141361761 + MER20 DNA MER1_type 10 215 -4 358 284 203 31 chr12 2424759 2424981 -141361474 + L3 LINE CR1 1308 1567 -10 592 279 135 5 chr12 2425298 2425513 -141360942 + MIR SINE MIR 20 262 0 191 138 0 0 chr12 2425972 2426001 -141360454 - L2 LINE L2 -33 3239 3211 280 196 0 0 chr12 2426022 2426073 -141360382 - MIR SINE MIR -114 148 98 306 286 48 29 chr12 2426661 2426766 -141359689 + MIR3 SINE MIR 94 200 -8 344 213 0 22 chr12 2429407 2429590 -141356865 + (CA)n Simple_repeat Simple_repeat 2 180 0 626 289 35 20 chr12 2430122 2430319 -141356136 + MIR SINE MIR 14 213 -49 890 150 19 25 chr12 2432187 2432347 -141354108 - MER53 DNA DNA -7 182 24 274 291 38 136 chr12 2432643 2432856 -141353599 + MIR SINE MIR 20 211 -51 216 111 28 0 chr12 2433232 2433268 -141353187 - L2 LINE L2 -23 3249 3213 2515 57 3 3 chr12 2434811 2435109 -141351346 - AluY SINE Alu -13 298 1 300 305 34 17 chr12 2435356 2435531 -141350924 + L1ME4a LINE L1 5445 5602 -519 437 283 157 13 chr12 2435740 2435970 -141350485 + L1ME4a LINE L1 5835 6097 -24 570 191 29 0 chr12 2435973 2436078 -141350377 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3340 134 104 18 chr12 2436075 2436755 -141349700 + Tigger3(Golem) DNA MER2_type 2290 3028 -1 193 286 176 55 chr12 2437947 2438146 -141348309 + MIR SINE MIR 40 262 0 221 83 28 0 chr12 2438758 2438794 -141347661 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 388 305 40 13 chr12 2440979 2441130 -141345325 - MIR SINE MIR -55 207 53 660 232 0 0 chr12 2441136 2441261 -141345194 - FLAM_A SINE Alu -8 125 1 183 218 164 0 chr12 2441455 2441510 -141344945 + L2 LINE L2 3200 3263 -9 225 244 27 20 chr12 2441853 2441940 -141344515 + MIR SINE MIR 94 130 -78 232 367 87 5 chr12 2441987 2442183 -141344272 - L3b LINE CR1 -96 1487 1276 268 304 60 46 chr12 2442458 2442596 -141343859 + MIR SINE MIR 18 160 -48 332 294 152 6 chr12 2442931 2443301 -141343154 - L1ME4a LINE L1 -124 5997 5559 2042 173 49 117 chr12 2443425 2444102 -141342353 - L1MC4 LINE L1 0 8042 7412 1059 255 134 34 chr12 2444104 2444551 -141341904 - L1MC4 LINE L1 -899 7143 6652 21 36 0 0 chr12 2444592 2444620 -141341835 + AT_rich Low_complexity Low_complexity 1 28 0 375 321 12 42 chr12 2444914 2445082 -141341373 - L1ME4a LINE L1 -1127 5019 4857 627 221 15 28 chr12 2445182 2445388 -141341067 + MIR SINE MIR 6 262 0 208 329 26 13 chr12 2445408 2445484 -141340971 - MIR3 SINE MIR -49 159 83 218 310 152 38 chr12 2448205 2448363 -141338092 - MIR3 SINE MIR -15 193 18 532 162 204 26 chr12 2448602 2448793 -141337662 - MLT1J LTR MaLR -58 453 229 190 238 0 24 chr12 2448927 2448969 -141337486 + MIR3 SINE MIR 142 182 -26 368 296 19 56 chr12 2449330 2449492 -141336963 + MER5A DNA MER1_type 3 158 -31 402 281 244 6 chr12 2450114 2450278 -141336177 - MIR SINE MIR -6 256 54 427 222 75 96 chr12 2450693 2450922 -141335533 + MIR SINE MIR 26 245 -17 21 0 0 0 chr12 2452493 2452514 -141333941 + AT_rich Low_complexity Low_complexity 1 21 0 204 274 16 16 chr12 2452648 2452710 -141333745 + GA-rich Low_complexity Low_complexity 4 65 0 397 297 0 25 chr12 2452883 2453040 -141333415 - MIR SINE MIR -6 256 38 258 234 43 64 chr12 2453182 2453276 -141333179 + MIR SINE MIR 90 181 -81 761 242 175 47 chr12 2453959 2454302 -141332153 + L2 LINE L2 2918 3304 -9 348 204 153 10 chr12 2454347 2454445 -141332010 - MIR SINE MIR -63 199 88 215 213 19 28 chr12 2456827 2456935 -141329520 + CT-rich Low_complexity Low_complexity 4 110 0 246 244 0 44 chr12 2456958 2457048 -141329407 + CT-rich Low_complexity Low_complexity 2 87 0 182 284 222 0 chr12 2457192 2457273 -141329182 + L2 LINE L2 3144 3242 -30 3226 196 39 20 chr12 2458118 2458833 -141327622 - L1MB2 LINE L1 -2 6169 5441 194 211 39 39 chr12 2458837 2458889 -141327566 - MIR SINE MIR -30 232 181 655 248 80 36 chr12 2459364 2459605 -141326850 - MIR SINE MIR 0 262 12 1217 235 128 35 chr12 2460877 2461425 -141325030 + L1ME3A LINE L1 5561 6159 -11 972 323 177 21 chr12 2462594 2463352 -141323103 + L3 LINE CR1 471 1346 -231 791 128 0 15 chr12 2463835 2463968 -141322487 - L1MB3 LINE L1 -1 6182 6052 195 42 0 0 chr12 2465408 2465432 -141321023 + (TA)n Simple_repeat Simple_repeat 2 25 0 421 250 225 25 chr12 2465508 2465668 -141320787 + MIR SINE MIR 21 212 -50 215 292 0 0 chr12 2465959 2466007 -141320448 + L2 LINE L2 3141 3188 -84 4740 148 86 13 chr12 2466140 2466269 -141320186 - L1MA9 LINE L1 0 6312 6194 321 26 0 0 chr12 2466269 2466307 -141320148 + (TG)n Simple_repeat Simple_repeat 1 38 0 4740 148 86 13 chr12 2466307 2467118 -141319337 - L1MA9 LINE L1 -118 6194 5303 1860 157 61 5 chr12 2467118 2467527 -141318928 + L1MA9 LINE L1 4670 5302 -844 457 217 12 121 chr12 2467715 2467881 -141318574 + MER5A DNA MER1_type 1 148 -41 188 305 0 34 chr12 2468184 2468243 -141318212 + MER5A DNA MER1_type 130 186 -3 494 235 27 54 chr12 2468300 2468449 -141318006 + MIR3 SINE MIR 16 160 -48 318 258 0 21 chr12 2468990 2469083 -141317372 - MER103 DNA DNA -68 98 8 752 256 128 9 chr12 2469671 2469882 -141316573 + MIR SINE MIR 16 251 -11 1694 186 4 0 chr12 2469930 2470205 -141316250 - AluJb SINE Alu -18 294 19 472 298 33 22 chr12 2470379 2470560 -141315895 + MIR3 SINE MIR 20 202 -6 1127 189 102 81 chr12 2472069 2472170 -141314285 + MLT1B LTR MaLR 2 99 -291 804 160 8 0 chr12 2472170 2472301 -141314154 - FLAM_C SINE Alu -1 132 1 1127 189 102 81 chr12 2472301 2472580 -141313875 + MLT1B LTR MaLR 99 390 0 296 118 29 59 chr12 2474180 2474248 -141312207 + MER103 DNA DNA 47 112 -54 1872 147 3 33 chr12 2475145 2475451 -141311004 - AluJb SINE Alu -15 297 1 621 270 113 0 chr12 2475825 2475984 -141310471 - MIR SINE MIR -17 245 69 318 269 38 108 chr12 2476075 2476261 -141310194 + MER5A DNA MER1_type 17 189 0 329 255 38 125 chr12 2476443 2476627 -141309828 + MER5B DNA MER1_type 1 168 -10 184 382 11 0 chr12 2476966 2477055 -141309400 - MIR SINE MIR -74 134 45 2275 108 0 0 chr12 2477188 2477475 -141308980 + AluSc SINE Alu 1 287 -22 278 287 110 7 chr12 2477615 2477751 -141308704 - MIR SINE MIR -112 150 1 194 282 118 0 chr12 2479188 2479273 -141307182 - L2 LINE L2 -744 2570 2476 354 326 92 32 chr12 2479904 2480142 -141306313 + MIR SINE MIR 2 262 0 239 316 164 29 chr12 2480211 2480455 -141306000 - L2 LINE L2 -2 3270 2994 250 309 104 83 chr12 2481376 2481810 -141304645 + L2 LINE L2 2830 3272 0 253 219 134 37 chr12 2481925 2482007 -141304448 - L2 LINE L2 -2 3311 3222 1528 121 36 5 chr12 2482103 2482326 -141304129 + MER30 DNA MER1_type 1 230 0 337 271 0 11 chr12 2482503 2482598 -141303857 - L3b LINE CR1 -194 1389 1296 376 285 32 16 chr12 2483194 2483317 -141303138 - MIR SINE MIR -134 128 4 219 355 48 8 chr12 2483573 2483697 -141302758 + L2 LINE L2 3179 3307 -6 463 311 117 5 chr12 2484593 2484815 -141301640 - MIR SINE MIR 0 262 16 488 328 81 6 chr12 2485728 2485902 -141300553 + MIR3 SINE MIR 18 204 -4 443 239 51 36 chr12 2486103 2486241 -141300214 + L2 LINE L2 3174 3313 0 293 308 10 10 chr12 2487717 2487821 -141298634 - MER5A DNA MER1_type -84 105 2 * 503 314 0 13 chr12 2487821 2487973 -141298482 - MIR3 SINE MIR -47 161 12 351 286 112 0 chr12 2488124 2488222 -141298233 + MIR SINE MIR 133 241 -21 334 336 0 0 chr12 2489242 2489358 -141297097 + MIR3 SINE MIR 68 183 -25 375 212 0 0 chr12 2489975 2490060 -141296395 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 286 297 85 48 chr12 2490179 2490344 -141296111 - L3 LINE CR1 -144 1433 1263 240 175 167 53 chr12 2490426 2490540 -141295915 - MER113 DNA MER1_type? -306 215 89 328 341 51 7 chr12 2490941 2491079 -141295376 - MIR SINE MIR -111 151 8 195 373 40 0 chr12 2491112 2491187 -141295268 - MIR3 SINE MIR -40 168 91 736 263 81 16 chr12 2493256 2493503 -141292952 - MLT1L LTR MaLR -4 611 349 388 284 39 8 chr12 2493976 2494103 -141292352 + MIR SINE MIR 58 188 -74 890 203 0 15 chr12 2494143 2494481 -141291974 + (TGG)n Simple_repeat Simple_repeat 1 332 0 719 209 0 11 chr12 2494511 2494693 -141291762 + (TGG)n Simple_repeat Simple_repeat 1 180 0 903 178 0 4 chr12 2494728 2494960 -141291495 + (TGG)n Simple_repeat Simple_repeat 1 231 0 195 366 0 0 chr12 2495706 2495777 -141290678 + L3 LINE CR1 1492 1562 -15 1875 159 26 0 chr12 2496631 2496977 -141289478 - L1MB4 LINE L1 0 6180 5826 358 291 23 0 chr12 2498525 2498611 -141287844 - MIR SINE MIR -64 144 57 231 330 10 10 chr12 2498911 2499008 -141287447 + GA-rich Low_complexity Low_complexity 3 99 0 1981 148 92 14 chr12 2499112 2499483 -141286972 - MSTB LTR MaLR 0 426 27 2137 136 32 70 chr12 2499505 2499945 -141286510 - MSTB-int LTR MaLR 0 1651 1229 222 317 37 0 chr12 2500802 2500884 -141285571 + MIR3 SINE MIR 121 205 -3 271 309 66 66 chr12 2501117 2501405 -141285050 + L2 LINE L2 2329 2616 -698 278 180 16 0 chr12 2502540 2502601 -141283854 + (TGGG)n Simple_repeat Simple_repeat 3 64 0 869 171 0 11 chr12 2502635 2502816 -141283639 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 243 257 40 0 chr12 2502816 2502890 -141283565 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 762 211 0 0 chr12 2502890 2503070 -141283385 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 742 198 7 0 chr12 2503097 2503409 -141283046 + (TGGA)n Simple_repeat Simple_repeat 1 314 0 348 284 26 17 chr12 2503959 2504075 -141282380 - MER5A DNA MER1_type -14 175 59 1919 153 14 23 chr12 2505677 2506023 -141280432 - MER61A LTR ERV1 0 343 1 2759 36 0 0 chr12 2506794 2507100 -141279355 + AluY SINE Alu 1 306 -5 482 317 12 0 chr12 2510062 2510223 -141276232 + L2 LINE L2 110 272 -3042 435 270 101 14 chr12 2510250 2510398 -141276057 - MER58B DNA MER1_type -3 338 178 2177 259 108 132 chr12 2510441 2511809 -141274646 + L2 LINE L2 361 1760 -1553 1266 167 22 61 chr12 2511809 2512120 -141274335 + MER33 DNA MER1_type 26 324 0 2177 259 108 132 chr12 2512120 2513464 -141272991 + L2 LINE L2 1760 3313 0 218 323 32 0 chr12 2515366 2515428 -141271027 - MIR SINE MIR -125 83 20 1983 108 23 96 chr12 2515493 2515836 -141270619 - AluYb8 SINE Alu 0 318 1 496 277 18 119 chr12 2516483 2516909 -141269546 - MLT1I LTR MaLR -20 389 1 2754 275 66 73 chr12 2517567 2519130 -141267325 + L2 LINE L2 1752 3312 -1 2617 37 10 0 chr12 2519432 2519730 -141266725 - AluY SINE Alu -10 301 1 24 53 0 0 chr12 2519964 2520002 -141266453 + AT_rich Low_complexity Low_complexity 1 38 0 258 265 0 15 chr12 2520098 2520166 -141266289 - L2 LINE L2 -212 3060 2994 234 284 45 0 chr12 2520748 2520815 -141265640 - L2 LINE L2 -3 3310 3241 794 268 49 8 chr12 2521445 2521691 -141264764 + MIR SINE MIR 5 260 -2 222 345 30 18 chr12 2523183 2523351 -141263104 + MIR3 SINE MIR 24 193 -15 293 255 106 28 chr12 2523775 2523916 -141262539 - MIR3 SINE MIR -16 192 41 329 258 161 0 chr12 2525285 2525409 -141261046 + MIR3 SINE MIR 29 172 -36 192 40 0 0 chr12 2525520 2525545 -141260910 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 188 250 36 0 chr12 2525819 2525875 -141260580 - L2 LINE L2 -3 3310 3253 24 0 0 0 chr12 2526297 2526321 -141260134 + AT_rich Low_complexity Low_complexity 1 24 0 670 274 139 22 chr12 2527058 2527281 -141259174 + MIR SINE MIR 12 260 -2 1901 143 21 0 chr12 2527365 2527652 -141258803 - AluSx SINE Alu -18 294 2 228 219 27 0 chr12 2527662 2527735 -141258720 - L1MB7 LINE L1 -1 6183 6109 * 1574 270 50 79 chr12 2527725 2528205 -141258250 - L1ME LINE L1 -4331 1749 1257 2413 85 3 0 chr12 2528205 2528500 -141257955 - AluSg1 SINE Alu -13 296 1 1574 270 50 79 chr12 2528500 2529373 -141257082 - L1ME LINE L1 -4823 1257 531 337 286 29 0 chr12 2530135 2530240 -141256215 - MIR3 SINE MIR -45 163 56 2416 102 0 3 chr12 2530994 2531308 -141255147 + AluSq SINE Alu 1 313 0 2480 57 0 0 chr12 2531539 2531849 -141254606 + AluY SINE Alu 1 310 0 498 290 35 21 chr12 2531857 2532252 -141254203 + L1MEd LINE L1 691 1081 -5048 353 284 108 52 chr12 2532340 2532534 -141253921 + L1ME3A LINE L1 5959 6163 -7 235 217 60 36 chr12 2532681 2532764 -141253691 + MER117 DNA MER1_type 32 116 -81 461 335 138 13 chr12 2532830 2533054 -141253401 + MIR SINE MIR 11 262 0 543 295 33 0 chr12 2534011 2534221 -141252234 + LTR33 LTR ERVL 20 236 -285 254 279 29 0 chr12 2534902 2534970 -141251485 + MER5A DNA MER1_type 18 87 -102 599 332 101 8 chr12 2535084 2535322 -141251133 - MIR SINE MIR 0 262 3 929 212 0 6 chr12 2535736 2535901 -141250554 - FRAM SINE Alu -2 164 1 428 282 41 100 chr12 2536804 2537123 -141249332 + L2 LINE L2 2972 3271 -1 227 328 0 0 chr12 2537113 2537180 -141249275 + MIR3 SINE MIR 136 202 -6 * 587 316 35 4 chr12 2538880 2539108 -141247347 + MIR SINE MIR 9 243 -19 739 339 60 37 chr12 2539115 2539546 -141246909 - L3 LINE CR1 -16 1561 1121 327 333 91 0 chr12 2539792 2539924 -141246531 - L2 LINE L2 -541 2773 2630 286 238 0 112 chr12 2539978 2540121 -141246334 + L1ME4a LINE L1 5992 6118 -3 652 304 87 58 chr12 2540491 2541023 -141245432 - L2 LINE L2 -2 3270 2730 646 167 30 8 chr12 2542069 2542201 -141244254 - L1MB3 LINE L1 0 6183 6049 279 282 51 0 chr12 2542488 2542566 -141243889 + MIR SINE MIR 111 192 -70 237 65 0 0 chr12 2545618 2545649 -141240806 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 222 344 133 20 chr12 2546415 2546566 -141239889 - L3 LINE CR1 -1398 179 12 1827 203 54 14 chr12 2547470 2547914 -141238541 + L1ME1 LINE L1 5700 6161 -5 308 164 15 0 chr12 2547941 2548008 -141238447 + GA-rich Low_complexity Low_complexity 2 69 0 374 57 19 0 chr12 2548140 2548193 -141238262 + (GGA)n Simple_repeat Simple_repeat 2 55 0 315 0 0 0 chr12 2548484 2548519 -141237936 + (TC)n Simple_repeat Simple_repeat 2 36 0 978 79 29 14 chr12 2550533 2550673 -141235782 - L1PA8 LINE L1 0 6172 6031 286 221 47 47 chr12 2551398 2551484 -141234971 - L2 LINE L2 -11 3261 3176 202 226 38 0 chr12 2552470 2552523 -141233932 + CT-rich Low_complexity Low_complexity 6 60 0 389 331 64 17 chr12 2552553 2552725 -141233730 - MER5A DNA MER1_type -4 185 6 306 0 0 0 chr12 2554491 2554525 -141231930 + (CA)n Simple_repeat Simple_repeat 1 34 0 2514 67 0 13 chr12 2557446 2557761 -141228694 + AluY SINE Alu 1 311 0 238 186 23 0 chr12 2557976 2558019 -141228436 + L2 LINE L2 3267 3310 -3 714 229 30 61 chr12 2558777 2559008 -141227447 - L2 LINE L2 0 3313 3090 546 186 132 12 chr12 2559389 2559556 -141226899 - MER5A DNA MER1_type -2 187 1 731 175 145 6 chr12 2559642 2559808 -141226647 - MER5A DNA MER1_type 0 189 1 775 246 29 19 chr12 2560023 2560230 -141226225 + MER63A DNA MER1_type 1 209 -1 1074 117 0 0 chr12 2562035 2562180 -141224275 + FRAM SINE Alu 1 140 -36 484 303 96 5 chr12 2562889 2563077 -141223378 + MIR SINE MIR 58 262 0 373 298 126 7 chr12 2563112 2563263 -141223192 - MIR3 SINE MIR -6 202 34 454 370 45 4 chr12 2564135 2564378 -141222077 - MIR SINE MIR -7 255 3 1742 188 10 13 chr12 2564891 2565194 -141221261 + AluJo SINE Alu 1 302 -10 2784 216 49 11 chr12 2565875 2566483 -141219972 + MER82 DNA MER2_type 14 644 -9 243 125 0 0 chr12 2568093 2568133 -141218322 + (CA)n Simple_repeat Simple_repeat 2 41 0 955 212 30 20 chr12 2568661 2568864 -141217591 + MER63A DNA MER1_type 1 205 -5 1061 174 11 0 chr12 2570233 2570411 -141216044 + MER5A DNA MER1_type 4 183 -6 2064 274 157 24 chr12 2572404 2573695 -141212760 - L2 LINE L2 0 3313 1850 2583 54 0 0 chr12 2574848 2575146 -141211309 + AluY SINE Alu 1 298 -13 213 291 154 18 chr12 2575455 2575565 -141210890 - MIR3 SINE MIR -72 136 12 233 223 58 39 chr12 2579017 2579120 -141207335 + L3b LINE CR1 1144 1248 -335 300 258 83 17 chr12 2579329 2579449 -141207006 - MIR SINE MIR -70 192 65 266 379 0 10 chr12 2580818 2580921 -141205534 - L2 LINE L2 -82 3190 3089 560 301 79 20 chr12 2581006 2581411 -141205044 - MLT1J2 LTR MaLR -2 448 20 267 309 92 44 chr12 2581563 2581812 -141204643 - L2 LINE L2 -432 2882 2622 285 238 125 12 chr12 2584753 2584833 -141201622 + MIR3 SINE MIR 120 208 0 2159 243 17 22 chr12 2585091 2585631 -141200824 - LTR31 LTR ERV1 -9 610 74 211 308 46 0 chr12 2585954 2586019 -141200436 + L2 LINE L2 3237 3304 -9 248 303 90 49 chr12 2587656 2587778 -141198677 - MIR SINE MIR -116 146 20 555 226 71 19 chr12 2587838 2587993 -141198462 + MIR3 SINE MIR 7 169 -39 266 309 81 52 chr12 2588314 2588524 -141197931 - L3 LINE CR1 -11 1566 1351 201 167 0 0 chr12 2588835 2588871 -141197584 + CT-rich Low_complexity Low_complexity 1 36 0 198 216 52 95 chr12 2590321 2590437 -141196018 + MIR SINE MIR 109 219 -43 402 353 143 28 chr12 2591119 2591581 -141194874 - L3 LINE CR1 -87 1490 976 2386 100 0 0 chr12 2591629 2591929 -141194526 + AluY SINE Alu 1 300 -11 2074 139 0 22 chr12 2591938 2592255 -141194200 + AluJo SINE Alu 1 310 -2 350 308 85 8 chr12 2592935 2593065 -141193390 + MIR3 SINE MIR 9 148 -60 1952 177 0 0 chr12 2593072 2593371 -141193084 + AluJo SINE Alu 5 303 -9 474 227 133 0 chr12 2593429 2593557 -141192898 - MIR SINE MIR -109 153 9 640 266 106 30 chr12 2593753 2593990 -141192465 + MIR SINE MIR 6 260 -2 297 298 0 11 chr12 2594960 2595054 -141191401 + T-rich Low_complexity Low_complexity 3 95 0 205 294 92 37 chr12 2595057 2595166 -141191289 - MIR3 SINE MIR -41 167 53 293 244 78 43 chr12 2595541 2595656 -141190799 + MIR SINE MIR 46 164 -98 480 266 176 23 chr12 2596368 2596755 -141189700 - LTR33 LTR ERVL -58 463 18 563 266 136 10 chr12 2596984 2597183 -141189272 - MER58A DNA MER1_type 0 224 1 1537 213 14 72 chr12 2597358 2597772 -141188683 - MLT1B LTR MaLR 0 390 1 8961 100 26 8 chr12 2601018 2602282 -141184173 - HSMAR1 DNA Mariner 0 1287 1 254 164 18 0 chr12 2604144 2604199 -141182256 + (TG)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr12 2604580 2604602 -141181853 + AT_rich Low_complexity Low_complexity 1 22 0 476 299 24 37 chr12 2604928 2605092 -141181363 + MIR3 SINE MIR 36 197 -11 21 36 0 0 chr12 2605104 2605132 -141181323 + AT_rich Low_complexity Low_complexity 1 28 0 466 285 163 19 chr12 2608704 2608974 -141177481 - L2 LINE L2 0 3313 3005 332 300 50 0 chr12 2609621 2609741 -141176714 + MIR3 SINE MIR 42 167 -41 185 271 0 34 chr12 2609831 2609890 -141176565 + MIR3 SINE MIR 149 205 -3 255 301 14 0 chr12 2614368 2614441 -141172014 + L2 LINE L2 3240 3313 0 22 0 0 0 chr12 2615457 2615479 -141170976 + AT_rich Low_complexity Low_complexity 1 22 0 347 284 12 0 chr12 2615501 2615582 -141170873 + L2 LINE L2 3232 3313 0 231 88 0 0 chr12 2615787 2615821 -141170634 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 324 237 223 22 chr12 2616122 2616261 -141170194 - MIR SINE MIR -93 169 3 1289 201 59 7 chr12 2616343 2616632 -141169823 - MER33 DNA MER1_type -4 320 17 207 0 0 0 chr12 2617370 2617393 -141169062 + (A)n Simple_repeat Simple_repeat 1 23 0 3500 136 34 37 chr12 2619256 2619901 -141166554 - L1MA3 LINE L1 0 6305 5663 229 252 35 61 chr12 2620497 2620612 -141165843 + L3 LINE CR1 1439 1550 -27 454 204 59 150 chr12 2620633 2620853 -141165602 + MER112 DNA MER1_type 48 247 -13 216 338 93 25 chr12 2621164 2621368 -141165087 + L2 LINE L2 2426 2643 -671 670 231 11 33 chr12 2621644 2621708 -141164747 - MER5B DNA MER1_type 0 178 114 2898 7 3 0 chr12 2621708 2622018 -141164437 + AluYb8 SINE Alu 1 311 -7 670 231 11 33 chr12 2622018 2622135 -141164320 - MER5B DNA MER1_type -64 114 1 301 347 122 0 chr12 2622403 2622550 -141163905 + MIR SINE MIR 63 227 -35 236 315 178 7 chr12 2622626 2622772 -141163683 - MIR SINE MIR -3 259 89 394 279 120 22 chr12 2623726 2623909 -141162546 + MIR SINE MIR 62 262 0 302 316 107 20 chr12 2624499 2624743 -141161712 - MLT1J LTR MaLR -22 489 225 2359 150 48 7 chr12 2624793 2625451 -141161004 + L1MB3 LINE L1 5451 6183 0 368 261 147 41 chr12 2625745 2625818 -141160637 - MER112 DNA MER1_type 0 260 196 3179 185 49 0 chr12 2625818 2626468 -141159987 - L1MB7 LINE L1 -1 6183 5502 368 261 147 41 chr12 2626468 2626612 -141159843 - MER112 DNA MER1_type -64 196 20 658 259 25 84 chr12 2627523 2627797 -141158658 - MIR SINE MIR -3 259 2 207 100 0 0 chr12 2628550 2628580 -141157875 + (T)n Simple_repeat Simple_repeat 1 30 0 447 68 0 0 chr12 2628819 2628878 -141157577 + (TCC)n Simple_repeat Simple_repeat 2 60 0 1083 106 18 0 chr12 2628984 2629328 -141157127 + (TCC)n Simple_repeat Simple_repeat 1 350 0 407 43 57 0 chr12 2629337 2629407 -141157048 + CT-rich Low_complexity Low_complexity 2 75 0 1049 99 11 17 chr12 2629408 2629589 -141156866 + (TCC)n Simple_repeat Simple_repeat 1 180 0 1495 169 26 38 chr12 2629600 2629866 -141156589 - AluJo SINE Alu 0 312 50 180 0 0 0 chr12 2633755 2633775 -141152680 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 500 257 70 48 chr12 2634284 2634432 -141152023 - L2 LINE L2 0 3313 3153 2696 13 0 0 chr12 2634432 2634735 -141151720 - AluY SINE Alu -8 303 1 500 257 70 48 chr12 2634735 2634819 -141151636 - L2 LINE L2 -160 3153 3072 446 240 123 18 chr12 2635132 2635303 -141151152 - L2 LINE L2 -747 2567 2379 23 0 0 0 chr12 2636139 2636162 -141150293 + AT_rich Low_complexity Low_complexity 1 23 0 1545 163 7 53 chr12 2636162 2636462 -141149993 - AluJo SINE Alu -26 286 1 274 287 0 37 chr12 2637418 2637526 -141148929 + MER5A DNA MER1_type 21 124 -65 466 270 85 36 chr12 2637711 2637946 -141148509 - MIR SINE MIR 0 262 19 219 222 0 0 chr12 2638220 2638265 -141148190 + CT-rich Low_complexity Low_complexity 3 47 0 805 104 0 17 chr12 2638608 2638723 -141147732 + AluSg/x SINE Alu 186 298 -12 293 239 85 46 chr12 2640208 2640338 -141146117 + MIR SINE MIR 74 208 -54 180 318 16 0 chr12 2640445 2640508 -141145947 + MIR3 SINE MIR 145 208 0 211 200 0 0 chr12 2641142 2641177 -141145278 + polypurine Low_complexity Low_complexity 3 37 0 582 306 116 36 chr12 2643526 2643915 -141142540 + L1MC5 LINE L1 7513 7932 -29 202 243 0 43 chr12 2644968 2645038 -141141417 + CT-rich Low_complexity Low_complexity 1 67 0 323 299 51 22 chr12 2645074 2645211 -141141244 + MER91A DNA MER1_type 55 195 -1 886 293 85 34 chr12 2645675 2646517 -141139938 - L2 LINE L2 -8 3305 2425 1747 226 67 7 chr12 2648252 2648686 -141137769 - MLT1C LTR MaLR -2 465 6 269 164 15 75 chr12 2648831 2648898 -141137557 - L2 LINE L2 -11 3261 3199 * 546 214 84 39 chr12 2648879 2649033 -141137422 - MIR SINE MIR -96 166 6 189 0 0 0 chr12 2649271 2649292 -141137163 + (T)n Simple_repeat Simple_repeat 1 21 0 440 217 0 12 chr12 2649473 2649556 -141136899 + MER81 DNA DNA 1 82 -32 306 363 62 27 chr12 2650068 2650324 -141136131 - L1MEd LINE L1 -4240 2070 1806 1014 305 65 42 chr12 2650383 2651400 -141135055 - L1MEd LINE L1 -4456 1673 622 271 258 0 16 chr12 2651679 2651741 -141134714 - L1MEd LINE L1 -6058 61 1 359 308 49 35 chr12 2651744 2651887 -141134568 + MIR SINE MIR 46 190 -72 367 337 148 12 chr12 2655927 2656096 -141130359 + L3 LINE CR1 1169 1360 -217 777 282 48 9 chr12 2657428 2657655 -141128800 - MIR SINE MIR -14 248 13 481 248 67 0 chr12 2657836 2657941 -141128514 + MER81 DNA DNA 2 113 -1 680 206 11 0 chr12 2658949 2659237 -141127218 + (TG)n Simple_repeat Simple_repeat 1 291 0 364 256 35 0 chr12 2659237 2659323 -141127132 - MER5B DNA MER1_type -79 99 11 288 302 58 38 chr12 2659407 2659589 -141126866 - MIR SINE MIR -46 216 35 268 404 0 0 chr12 2659694 2659798 -141126657 + MIR SINE MIR 33 136 -72 3883 141 33 11 chr12 2660294 2660932 -141125523 - MER39B LTR ERV1 -1 652 1 463 354 53 5 chr12 2661153 2661359 -141125096 - MIR SINE MIR -37 225 10 184 351 99 45 chr12 2662798 2663131 -141123324 + L2 LINE L2 2916 3266 -6 630 195 0 46 chr12 2664832 2665002 -141121453 - MIR SINE MIR -62 146 18 251 272 0 0 chr12 2665145 2665226 -141121229 + (CAT)n Simple_repeat Simple_repeat 2 82 0 203 284 54 40 chr12 2666036 2666110 -141120345 - L2 LINE L2 -616 2698 2624 2002 85 0 4 chr12 2666409 2666668 -141119787 + AluSx SINE Alu 1 258 -54 217 122 0 41 chr12 2667992 2668041 -141118414 + (GGAGA)n Simple_repeat Simple_repeat 1 47 0 390 305 79 42 chr12 2669770 2669960 -141116495 - MIR SINE MIR -52 210 14 607 273 36 16 chr12 2671877 2672126 -141114329 + L1M4 LINE L1 4357 4610 -1536 180 342 26 26 chr12 2676356 2676432 -141110023 - L2 LINE L2 -15 3298 3223 219 312 145 22 chr12 2676621 2676759 -141109696 - MIR SINE MIR -6 256 102 202 315 41 14 chr12 2676809 2676882 -141109573 - MIR SINE MIR -24 238 164 257 233 68 27 chr12 2677584 2677657 -141108798 - L3 LINE CR1 -171 1406 1331 495 296 292 17 chr12 2677736 2678507 -141107948 - L2 LINE L2 -101 3212 2218 225 352 14 35 chr12 2678805 2678947 -141107508 - L2 LINE L2 -467 2847 2709 324 308 85 46 chr12 2680771 2680901 -141105554 + MER20B DNA MER1_type 42 176 -607 461 238 89 83 chr12 2682148 2682236 -141104219 - MIR SINE MIR 0 262 171 1540 164 26 48 chr12 2682236 2682547 -141103908 + AluJo SINE Alu 1 304 -8 461 238 89 83 chr12 2682547 2682626 -141103829 - MIR SINE MIR -91 171 94 182 374 12 0 chr12 2683389 2683472 -141102983 + L2 LINE L2 3189 3272 0 1288 136 189 12 chr12 2685192 2685435 -141101020 + AluJo SINE Alu 1 286 -26 657 264 88 0 chr12 2686063 2686256 -141100199 - MIR SINE MIR -45 217 8 200 111 28 0 chr12 2687934 2687970 -141098485 + CT-rich Low_complexity Low_complexity 3 39 0 195 198 11 44 chr12 2690718 2690809 -141095646 + T-rich Low_complexity Low_complexity 2 89 0 215 298 0 40 chr12 2691013 2691137 -141095318 + T-rich Low_complexity Low_complexity 1 119 0 486 172 0 0 chr12 2692359 2692458 -141093997 + (TG)n Simple_repeat Simple_repeat 1 99 0 207 279 78 47 chr12 2693073 2693202 -141093253 - MIR SINE MIR -53 209 77 1008 279 147 44 chr12 2694561 2695597 -141090858 - L2 LINE L2 -2 3311 2104 305 294 154 7 chr12 2696071 2696214 -141090241 + MIR3 SINE MIR 38 201 -7 314 310 20 10 chr12 2696711 2696811 -141089644 - MIR SINE MIR -63 145 45 192 323 54 11 chr12 2697829 2697922 -141088533 - MIR SINE MIR -66 142 46 28 29 0 0 chr12 2701028 2701063 -141085392 + AT_rich Low_complexity Low_complexity 1 35 0 209 56 0 28 chr12 2702826 2702862 -141083593 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 330 26 0 0 chr12 2703304 2703319 -141083136 + (GA)n Simple_repeat Simple_repeat 1 54 0 330 26 0 0 chr12 2703319 2703358 -141083097 + (GA)n Simple_repeat Simple_repeat 1 39 0 1952 134 0 50 chr12 2704408 2704729 -141081726 + AluJo SINE Alu 1 305 -7 201 231 0 0 chr12 2707334 2707373 -141079082 + C-rich Low_complexity Low_complexity 3 41 0 660 231 65 0 chr12 2709741 2709910 -141076545 - MIR SINE MIR -34 228 49 206 200 0 0 chr12 2710901 2710936 -141075519 + polypurine Low_complexity Low_complexity 1 35 0 271 281 48 0 chr12 2712097 2712181 -141074274 + MIR SINE MIR 62 148 -74 6564 135 27 9 chr12 2712259 2713426 -141073029 + L1 LINE L1 3732 4919 -1227 448 326 30 33 chr12 2713422 2713726 -141072729 + HAL1 LINE L1 1445 1747 -760 * 477 247 84 59 chr12 2713991 2714230 -141072225 + L1MDa LINE L1 2315 2559 -3981 351 328 139 14 chr12 2714237 2714914 -141071541 + L1MDa LINE L1 2567 3423 -3117 6193 122 81 31 chr12 2714914 2716087 -141070368 + Tigger3b DNA MER2_type 1 1231 0 351 328 139 14 chr12 2716087 2716461 -141069994 + L1MDa LINE L1 3423 3749 -2791 2349 96 0 0 chr12 2717110 2717402 -141069053 + AluSg SINE Alu 1 292 -18 1675 195 0 14 chr12 2717544 2717831 -141068624 + AluJo SINE Alu 3 285 -27 417 39 0 0 chr12 2717831 2717882 -141068573 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 344 98 17 chr12 2717903 2718261 -141068194 + L1MDa LINE L1 3704 4090 -2450 416 345 58 9 chr12 2718244 2718467 -141067988 + L1MDa LINE L1 4545 4778 -1762 * 506 324 100 28 chr12 2718453 2718527 -141067928 + L1ME4a LINE L1 4475 4542 -1998 2347 106 0 0 chr12 2718527 2718838 -141067617 + AluY SINE Alu 1 311 0 506 324 100 28 chr12 2718838 2719053 -141067402 + L1ME4a LINE L1 4542 4785 -1755 1210 299 39 25 chr12 2719061 2719807 -141066648 + L1ME4a LINE L1 4891 5646 -894 1988 113 0 0 chr12 2719823 2720114 -141066341 + L1PB2 LINE L1 5429 5719 -432 786 134 140 23 chr12 2720112 2720283 -141066172 + L1PB2 LINE L1 5960 6150 -1 * 2695 43 3 0 chr12 2720302 2720606 -141065849 - AluY SINE Alu -6 305 1 413 315 148 19 chr12 2720613 2721206 -141065249 + L1ME4a LINE L1 5657 6326 -238 2087 150 3 0 chr12 2722474 2722774 -141063681 + AluSx SINE Alu 1 301 -11 198 175 25 0 chr12 2723464 2723504 -141062951 + MIR3 SINE MIR 165 205 -3 2483 103 66 15 chr12 2725018 2725425 -141061030 - MSTA LTR MaLR 0 428 1 1403 77 101 0 chr12 2725813 2726022 -141060433 + MER30 DNA MER1_type 1 230 0 369 312 98 0 chr12 2726279 2726452 -141060003 + MER91A DNA MER1_type 4 193 -3 401 308 24 35 chr12 2726576 2726745 -141059710 + MER5A DNA MER1_type 2 168 -21 234 329 20 34 chr12 2726612 2726761 -141059694 - MER5A DNA MER1_type -27 162 16 * 235 345 86 2 chr12 2726853 2726980 -141059475 + MIR SINE MIR 16 152 -56 2258 103 17 0 chr12 2727145 2727445 -141059010 + AluSg SINE Alu 1 305 -5 2349 96 0 0 chr12 2727586 2727879 -141058576 - AluSc SINE Alu -16 293 1 266 284 116 13 chr12 2727892 2728047 -141058408 + L1ME4a LINE L1 6326 6496 -19 1720 226 82 5 chr12 2728949 2729378 -141057077 - MLT1C LTR MaLR 0 467 6 237 185 111 0 chr12 2729610 2729664 -141056791 - MIR SINE MIR -201 61 2 996 218 223 47 chr12 2729694 2729760 -141056695 - MLT1E3 LTR MaLR -1 623 570 2277 93 34 0 chr12 2729760 2730051 -141056404 + AluSp SINE Alu 1 301 -12 996 218 223 47 chr12 2730051 2730393 -141056062 - MLT1E3 LTR MaLR -54 570 143 253 284 0 73 chr12 2730849 2730990 -141055465 + G-rich Low_complexity Low_complexity 1 130 0 754 209 115 13 chr12 2731654 2731888 -141054567 - MER20B DNA MER1_type 0 783 526 996 274 150 19 chr12 2732046 2732514 -141053941 - MER20B DNA MER1_type -253 530 2 337 316 184 0 chr12 2732571 2732707 -141053748 - MIR SINE MIR -56 206 46 404 276 164 51 chr12 2733281 2733556 -141052899 + L1MC4a LINE L1 5862 6167 -1641 559 265 12 35 chr12 2734791 2734961 -141051494 + Charlie8 DNA MER1_type 115 280 -2137 303 242 0 0 chr12 2737860 2737922 -141048533 + MIR SINE MIR 195 256 -6 190 252 122 89 chr12 2738762 2738885 -141047570 - MIR SINE MIR -92 170 44 261 300 0 0 chr12 2738973 2739043 -141047412 + (TG)n Simple_repeat Simple_repeat 1 70 0 1356 78 16 3 chr12 2739417 2740162 -141046293 + (CA)n Simple_repeat Simple_repeat 1 754 0 3923 280 50 22 chr12 2740221 2741549 -141044906 + ERVL LTR ERVL 3074 4438 -1326 751 169 21 69 chr12 2741705 2741894 -141044561 + LTR41 LTR ERVL 1 180 -593 394 227 171 11 chr12 2742105 2742281 -141044174 + LTR50 LTR ERVL 590 793 -2 183 239 130 0 chr12 2742298 2742344 -141044111 + L2 LINE L2 2928 2979 -334 281 277 0 15 chr12 2742667 2742732 -141043723 - L2 LINE L2 -11 3302 3239 241 328 74 25 chr12 2742892 2743014 -141043441 + MER91A DNA MER1_type 1 128 -68 1802 256 67 53 chr12 2743386 2743604 -141042851 - MLT1E LTR MaLR 0 593 379 2026 116 7 7 chr12 2743604 2743897 -141042558 + AluSq SINE Alu 1 293 -20 1802 256 67 53 chr12 2743897 2744263 -141042192 - MLT1E LTR MaLR -214 379 1 183 263 35 18 chr12 2744496 2744553 -141041902 - L3b LINE CR1 -185 1398 1341 808 107 43 11 chr12 2745921 2746372 -141040083 + (CA)n Simple_repeat Simple_repeat 1 465 0 292 284 26 17 chr12 2746432 2746548 -141039907 + MER112 DNA MER1_type 1 117 -143 369 336 37 29 chr12 2746622 2746866 -141039589 - MER112 DNA MER1_type -7 253 8 213 311 0 40 chr12 2746967 2747041 -141039414 - MIR SINE MIR -81 181 111 240 262 0 0 chr12 2747730 2747789 -141038666 + MIR SINE MIR 94 153 -55 2289 83 3 0 chr12 2751007 2751307 -141035148 - AluSp SINE Alu -12 301 1 192 118 29 29 chr12 2751563 2751597 -141034858 + L3b LINE CR1 1293 1326 -257 292 198 430 0 chr12 2752567 2752688 -141033767 - MER5B DNA MER1_type -4 174 2 909 274 177 25 chr12 2752689 2753175 -141033280 + L3 LINE CR1 1010 1569 -8 652 235 88 14 chr12 2753190 2753407 -141033048 - L2 LINE L2 -3 3310 3078 1542 183 3 13 chr12 2753795 2754101 -141032354 - AluJo SINE Alu -9 303 1 23 33 0 0 chr12 2754928 2754958 -141031497 + GC_rich Low_complexity Low_complexity 1 30 0 1446 123 18 31 chr12 2761922 2762150 -141024305 + L1M4c LINE L1 19 243 -6141 3861 160 54 9 chr12 2762281 2762981 -141023474 + L1M4c LINE L1 249 980 -5404 * 45728 32 3 1 chr12 2762966 2769111 -141017344 + L1PA4 LINE L1 2 6155 0 10623 203 30 12 chr12 2769124 2773377 -141013078 + L1M4c LINE L1 947 5282 -1100 838 122 0 8 chr12 2773372 2773503 -141012952 + L1MB3 LINE L1 5818 5947 -224 * 501 145 226 8 chr12 2773510 2773634 -141012821 + L1MB3 LINE L1 6032 6182 -1 403 307 6 61 chr12 2774964 2775428 -141011027 + MER5A DNA MER1_type 8 161 -28 2173 109 0 0 chr12 2775006 2775308 -141011147 + AluSg SINE Alu 1 302 -8 200 300 87 47 chr12 2775308 2775450 -141011005 - MER5B DNA MER1_type -27 151 1 734 289 32 40 chr12 2776481 2776758 -141009697 + L2 LINE L2 2635 2909 -405 679 228 23 84 chr12 2776776 2776991 -141009464 + LTR41 LTR ERVL 1 202 -571 387 221 154 40 chr12 2777273 2777422 -141009033 + LTR41 LTR ERVL 605 770 -3 473 362 22 13 chr12 2777822 2778051 -141008404 + ERVL LTR ERVL 461 691 -5073 204 125 0 0 chr12 2778276 2778308 -141008147 + (TG)n Simple_repeat Simple_repeat 1 32 0 2014 146 50 20 chr12 2778323 2778373 -141008082 + THE1C LTR MaLR 8 55 -320 2293 83 0 3 chr12 2778373 2778675 -141007780 - AluSq SINE Alu -12 301 1 2014 146 50 20 chr12 2778675 2778981 -141007474 + THE1C LTR MaLR 55 375 0 235 250 0 29 chr12 2778981 2779049 -141007406 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 5921 196 21 114 chr12 2779050 2779845 -141006610 + L1 LINE L1 2679 3547 -2599 2211 102 0 0 chr12 2779845 2780140 -141006315 + AluSg SINE Alu 3 297 -13 5921 196 21 114 chr12 2780140 2780634 -141005821 + L1 LINE L1 3547 4086 -2060 1063 153 0 0 chr12 2780634 2780804 -141005651 + AluSg/x SINE Alu 135 304 -8 5921 196 21 114 chr12 2780804 2781313 -141005142 + L1 LINE L1 4086 4462 -1684 4218 142 41 1 chr12 2781313 2782023 -141004432 + L1PA16 LINE L1 5412 6149 -17 5921 196 21 114 chr12 2782023 2782040 -141004415 + L1 LINE L1 4462 4479 -1667 3638 321 40 7 chr12 2782070 2783255 -141003200 + ERVL LTR ERVL 1758 2985 -2779 951 117 0 0 chr12 2783255 2783435 -141003020 + (CA)n Simple_repeat Simple_repeat 1 180 0 3638 321 40 7 chr12 2783435 2783453 -141003002 + ERVL LTR ERVL 2985 3001 -2763 924 135 0 0 chr12 2783453 2783901 -141002554 + (CA)n Simple_repeat Simple_repeat 1 448 0 377 88 0 15 chr12 2783914 2783982 -141002473 + (CA)n Simple_repeat Simple_repeat 2 68 0 335 266 175 28 chr12 2784598 2784741 -141001714 + MIR3 SINE MIR 38 201 -7 1352 142 145 14 chr12 2985567 2985856 -140800599 - L1 LINE L1 -2363 3783 3457 257 298 11 43 chr12 2985864 2985958 -140800497 + L2 LINE L2 3000 3090 -182 704 232 24 68 chr12 2986134 2986341 -140800114 - MER58A DNA MER1_type 0 224 27 1330 178 22 0 chr12 2986361 2986630 -140799825 + L1MA4 LINE L1 6016 6290 -10 23 0 0 0 chr12 2986630 2986653 -140799802 + AT_rich Low_complexity Low_complexity 1 23 0 259 256 79 43 chr12 2986791 2986955 -140799500 + L1ME4a LINE L1 5935 6104 -17 810 111 8 0 chr12 2987372 2987489 -140798966 + FLAM_C SINE Alu 1 118 -15 2342 83 3 0 chr12 2987526 2987815 -140798640 + AluY SINE Alu 1 290 -21 942 57 0 0 chr12 2987823 2987945 -140798510 + HERVK9 LTR ERVK 5634 5755 -161 1046 59 15 0 chr12 2987946 2988081 -140798374 - MER9 LTR ERVK -374 137 1 476 172 108 0 chr12 2988082 2988175 -140798280 - AluSg SINE Alu -206 104 2 1017 214 10 0 chr12 2988177 2988383 -140798072 + L1MB8 LINE L1 5354 5561 -617 986 68 7 103 chr12 2988383 2988529 -140797926 + AluSq/x SINE Alu 1 132 -180 1264 105 6 0 chr12 2989062 2989248 -140797207 + AluSp SINE Alu 121 307 0 2421 199 38 25 chr12 2989248 2989807 -140796648 + L1MB8 LINE L1 5554 6119 -59 1282 182 0 0 chr12 2989809 2990018 -140796437 + AluJo SINE Alu 7 215 -97 2048 120 18 0 chr12 2990260 2990544 -140795911 - AluSx SINE Alu -23 289 1 577 216 8 24 chr12 2991343 2991468 -140794987 + MER2 DNA MER2_type 1 123 -222 3261 92 6 32 chr12 2991684 2992186 -140794269 - LTR22B LTR ERVK -3 489 1 207 0 0 0 chr12 2992777 2992800 -140793655 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2463 93 0 0 chr12 2992838 2993138 -140793317 + AluSp SINE Alu 1 300 -13 420 234 0 43 chr12 2993438 2993532 -140792923 - L1MC4 LINE L1 -1339 6703 6614 329 275 25 0 chr12 2993476 2993556 -140792899 + L1MC3 LINE L1 6571 6652 -1133 * 2169 115 7 0 chr12 2993632 2993920 -140792535 + AluSx SINE Alu 1 290 -22 2740 264 39 11 chr12 2994221 2994281 -140792174 + L1ME3 LINE L1 5173 5230 -932 243 0 0 0 chr12 2994281 2994308 -140792147 + (TG)n Simple_repeat Simple_repeat 2 28 0 2740 264 39 11 chr12 2994308 2994370 -140792085 + L1ME3 LINE L1 5230 5289 -873 2567 73 0 10 chr12 2994370 2994684 -140791771 - AluSx SINE Alu -1 311 1 2740 264 39 11 chr12 2994684 2995488 -140790967 + L1ME3 LINE L1 5289 6131 -31 245 227 82 41 chr12 2995655 2995752 -140790703 + L2 LINE L2 3198 3298 -15 928 128 0 0 chr12 2996613 2996738 -140789717 - FLAM_C SINE Alu -18 125 1 2021 134 14 7 chr12 2997291 2997583 -140788872 + AluJb SINE Alu 3 296 -16 332 292 129 67 chr12 2997649 2997696 -140788759 - MIR SINE MIR -29 233 190 1614 162 27 34 chr12 2997696 2997993 -140788462 + AluJb SINE Alu 2 296 -16 332 292 129 67 chr12 2997993 2998123 -140788332 - MIR SINE MIR -72 190 45 2588 71 0 0 chr12 2998297 2998608 -140787847 + AluY SINE Alu 1 311 0 272 329 87 14 chr12 2999533 2999740 -140786715 - MIR SINE MIR -35 227 6 1333 93 6 0 chr12 3000306 3000478 -140785977 + AluSq SINE Alu 1 173 -140 502 94 0 0 chr12 3000478 3000563 -140785892 + AluJ/FRAM SINE Alu 224 308 -4 192 276 92 13 chr12 3000601 3000677 -140785778 - L2 LINE L2 -4 3309 3228 186 43 0 0 chr12 3001432 3001455 -140785000 + (A)n Simple_repeat Simple_repeat 1 23 0 31 58 0 0 chr12 3001919 3001971 -140784484 + GC_rich Low_complexity Low_complexity 1 52 0 30 93 0 0 chr12 3002178 3002264 -140784191 + GC_rich Low_complexity Low_complexity 1 86 0 28 61 0 0 chr12 3002501 3002550 -140783905 + GC_rich Low_complexity Low_complexity 1 49 0 205 267 144 0 chr12 3003428 3003518 -140782937 - MIR SINE MIR -66 196 94 355 297 40 20 chr12 3005469 3005617 -140780838 + MIR3 SINE MIR 37 187 -21 180 297 55 55 chr12 3006130 3006258 -140780197 - L2 LINE L2 0 3272 3145 700 228 6 6 chr12 3008248 3008406 -140778049 + FRAM SINE Alu 1 158 -18 386 319 32 27 chr12 3008576 3008761 -140777694 - L1MC4a LINE L1 -1871 5937 5752 2319 100 13 0 chr12 3008774 3009074 -140777381 - AluSq SINE Alu -9 304 1 367 191 142 53 chr12 3009096 3009305 -140777150 - Charlie5 DNA MER1_type -27 2585 3 2018 152 0 7 chr12 3009366 3009668 -140776787 - AluJb SINE Alu -12 300 1 437 216 0 39 chr12 3011463 3011565 -140774890 + AluJb SINE Alu 191 288 -24 334 286 71 26 chr12 3011683 3011837 -140774618 - MIR SINE MIR 0 262 102 244 185 283 22 chr12 3011882 3011974 -140774481 + MIR3 SINE MIR 90 205 -3 215 295 186 38 chr12 3012338 3012575 -140773880 + L2 LINE L2 2546 2817 -497 945 162 6 39 chr12 3013066 3013080 -140773375 - AluJb SINE Alu -3 309 296 2250 123 10 0 chr12 3013080 3013382 -140773073 - AluSx SINE Alu -7 305 1 945 162 6 39 chr12 3013382 3013396 -140773059 - AluJb SINE Alu -16 296 283 213 65 0 0 chr12 3013396 3013427 -140773028 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 945 162 6 39 chr12 3013427 3013576 -140772879 - AluJb SINE Alu -29 283 137 2243 124 0 0 chr12 3013576 3013875 -140772580 - AluSq SINE Alu -14 299 1 310 183 157 78 chr12 3014063 3014178 -140772277 - L1MB5 LINE L1 -9 6165 6042 2416 83 0 32 chr12 3014684 3014998 -140771457 + AluY SINE Alu 1 304 -7 1996 96 37 0 chr12 3015468 3015738 -140770717 + AluSq SINE Alu 21 300 -13 2456 88 3 0 chr12 3015738 3016043 -140770412 + AluY SINE Alu 1 306 -5 2364 94 7 10 chr12 3016296 3016605 -140769850 + AluSg SINE Alu 1 308 -2 1904 178 7 0 chr12 3016622 3016925 -140769530 - AluSx SINE Alu -7 305 1 832 153 108 0 chr12 3017368 3017525 -140768930 + AluSg/x SINE Alu 136 309 -3 2466 65 0 46 chr12 3017527 3017668 -140768787 + AluSc SINE Alu 1 147 -162 2447 58 0 3 chr12 3017668 3017961 -140768494 + AluY SINE Alu 1 292 -19 207 0 0 0 chr12 3017961 3017984 -140768471 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 2466 65 0 46 chr12 3017984 3018165 -140768290 + AluSc SINE Alu 145 309 0 530 194 114 55 chr12 3018733 3018970 -140767485 + MER112 DNA MER1_type 3 253 -7 1478 108 10 0 chr12 3019682 3019886 -140766569 - AluSg/x SINE Alu -15 295 90 277 122 0 0 chr12 3019886 3019927 -140766528 - Alu SINE Alu -261 41 1 290 230 0 27 chr12 3019938 3020012 -140766443 + MIR SINE MIR 184 255 -7 281 348 51 8 chr12 3020038 3020156 -140766299 - L2 LINE L2 0 3272 3150 1827 180 0 3 chr12 3020585 3020885 -140765570 - AluJo SINE Alu -13 299 1 286 269 55 71 chr12 3021047 3021188 -140765267 + L2 LINE L2 3130 3269 -44 2119 157 0 6 chr12 3021188 3021501 -140764954 + AluJb SINE Alu 1 311 -1 286 269 55 71 chr12 3021501 3021541 -140764914 + L2 LINE L2 3269 3308 -5 1174 102 0 30 chr12 3021617 3021783 -140764672 - AluSq SINE Alu -16 297 137 1788 170 0 50 chr12 3022504 3022672 -140763783 - AluJo SINE Alu -11 301 126 2436 87 3 0 chr12 3022672 3022971 -140763484 - AluSx SINE Alu -12 300 1 2525 81 0 0 chr12 3022971 3023269 -140763186 - AluY SINE Alu -13 298 1 2049 151 0 22 chr12 3023269 3023586 -140762869 - AluJb SINE Alu -2 310 1 1788 170 0 50 chr12 3023586 3023732 -140762723 - AluJo SINE Alu -183 129 1 323 339 9 9 chr12 3025012 3025127 -140761328 - L2 LINE L2 0 3313 3199 746 214 37 21 chr12 3025137 3025324 -140761131 + AluJo SINE Alu 118 307 -5 2048 138 24 0 chr12 3025376 3025672 -140760783 + AluSq SINE Alu 1 303 -10 2002 121 13 49 chr12 3025676 3025823 -140760632 + AluSx SINE Alu 1 133 -179 2400 77 0 13 chr12 3025823 3026122 -140760333 + AluY SINE Alu 1 295 -16 2002 121 13 49 chr12 3026122 3026280 -140760175 + AluSx SINE Alu 133 295 -17 267 279 54 0 chr12 3026284 3026395 -140760060 - L2 LINE L2 -175 3138 3022 203 103 26 0 chr12 3027258 3027297 -140759158 + C-rich Low_complexity Low_complexity 2 41 0 1676 191 30 10 chr12 3028558 3028862 -140757593 - AluJo SINE Alu -2 310 1 469 245 129 0 chr12 3029169 3029308 -140757147 + MIR SINE MIR 36 192 -70 692 182 186 23 chr12 3031617 3031837 -140754618 - MER112 DNA MER1_type 0 256 1 2011 163 0 3 chr12 3032404 3032704 -140753751 - AluSx SINE Alu -13 299 1 424 136 0 0 chr12 3034878 3034944 -140751511 - L1MB7 LINE L1 -98 6086 6021 2430 76 3 10 chr12 3035198 3035499 -140750956 + AluSp SINE Alu 1 299 -14 829 146 51 22 chr12 3035565 3035702 -140750753 + FLAM_C SINE Alu 1 141 -2 1646 167 41 31 chr12 3036130 3036423 -140750032 + AluJb SINE Alu 3 298 -14 2232 105 3 0 chr12 3036440 3036725 -140749730 + AluSx SINE Alu 5 290 -22 230 262 71 56 chr12 3036798 3036924 -140749531 - L2 LINE L2 -213 3059 2932 2218 147 0 0 chr12 3037942 3038249 -140748206 + AluSx SINE Alu 1 307 -5 204 192 0 58 chr12 3038369 3038403 -140748052 + CT-rich Low_complexity Low_complexity 4 36 -16 638 241 0 0 chr12 3038403 3038536 -140747919 - FLAM_A SINE Alu 0 133 1 204 192 0 58 chr12 3038536 3038553 -140747902 + CT-rich Low_complexity Low_complexity 36 52 0 401 250 264 0 chr12 3038696 3038836 -140747619 + MER5A DNA MER1_type 11 187 -2 256 293 151 82 chr12 3039191 3039423 -140747032 + L2 LINE L2 3023 3270 -2 804 221 103 0 chr12 3040373 3040586 -140745869 - MIR SINE MIR 0 262 28 294 29 0 0 chr12 3041797 3041832 -140744623 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr12 3041832 3041861 -140744594 + (GA)n Simple_repeat Simple_repeat 2 30 0 821 265 108 42 chr12 3042518 3042926 -140743529 - L1ME3A LINE L1 -260 5910 5476 2137 182 44 22 chr12 3043222 3043679 -140742776 + MLT1C LTR MaLR 1 467 0 2272 93 0 52 chr12 3043696 3043836 -140742619 + AluSq SINE Alu 7 153 -160 2595 34 0 3 chr12 3043836 3044128 -140742327 + AluY SINE Alu 1 291 -20 2272 93 0 52 chr12 3044128 3044311 -140742144 + AluSq SINE Alu 153 313 0 1205 144 0 0 chr12 3044315 3044482 -140741973 + FRAM SINE Alu 1 159 -17 2097 141 3 0 chr12 3045650 3045940 -140740515 + AluSx SINE Alu 1 291 -21 737 212 71 16 chr12 3046204 3046388 -140740067 - L2 LINE L2 -1 3312 3119 1959 169 19 0 chr12 3046388 3046760 -140739695 + L1PA16 LINE L1 5787 6165 -1 235 191 21 149 chr12 3046761 3046807 -140739648 + L1M4 LINE L1 4505 4555 -1591 2270 92 0 23 chr12 3046807 3047110 -140739345 + AluSx SINE Alu 1 296 -16 235 191 21 149 chr12 3047110 3047161 -140739294 + L1M4 LINE L1 4555 4581 -1565 2418 60 0 0 chr12 3047161 3047443 -140739012 + AluY SINE Alu 17 298 -13 235 191 21 149 chr12 3047443 3047485 -140738970 + L1M4 LINE L1 4581 4627 -1519 820 160 33 149 chr12 3048184 3048360 -140738095 + MER33 DNA MER1_type 5 200 -2385 2346 91 0 3 chr12 3048360 3048657 -140737798 - AluSc SINE Alu -13 296 1 820 160 33 149 chr12 3048657 3048754 -140737701 + MER33 DNA MER1_type 200 307 -2278 2394 94 0 7 chr12 3048754 3049061 -140737394 - AluSc SINE Alu -4 305 1 820 160 33 149 chr12 3049061 3049100 -140737355 + MER33 DNA MER1_type 307 274 -2311 1802 158 34 0 chr12 3049100 3049391 -140737064 + AluJb SINE Alu 1 301 -11 820 160 33 149 chr12 3049391 3049438 -140737017 + MER33 DNA MER1_type 273 324 0 367 339 103 21 chr12 3049442 3049675 -140736780 - L3b LINE CR1 -140 1443 1192 233 298 18 0 chr12 3050042 3050099 -140736356 - MIR SINE MIR -109 153 96 2316 106 0 0 chr12 3050171 3050464 -140735991 + AluSx SINE Alu 1 293 -19 423 260 63 8 chr12 3050465 3050592 -140735863 + MIR SINE MIR 59 192 -70 1861 139 27 14 chr12 3050618 3050912 -140735543 + AluJb SINE Alu 1 298 -14 2032 154 0 0 chr12 3050912 3051204 -140735251 + AluSx SINE Alu 1 292 -20 816 154 0 0 chr12 3052509 3052639 -140733816 - FLAM_A SINE Alu -1 132 3 350 281 50 0 chr12 3053145 3053266 -140733189 + MIR3 SINE MIR 78 204 -4 923 208 60 1 chr12 3053525 3053824 -140732631 - L1MB7 LINE L1 -2 6169 5833 1711 153 5 83 chr12 3053838 3054017 -140732438 - L1MB4 LINE L1 -2 6178 5986 2279 76 10 30 chr12 3054017 3054321 -140732134 + AluY SINE Alu 1 298 -13 1711 153 5 83 chr12 3054321 3054560 -140731895 - L1MB4 LINE L1 -194 5986 5793 359 272 53 27 chr12 3054601 3054807 -140731648 - MIR SINE MIR -12 250 33 396 40 0 0 chr12 3055503 3055553 -140730902 + (CA)n Simple_repeat Simple_repeat 2 51 0 265 250 68 119 chr12 3056695 3056834 -140729621 - MER5B DNA MER1_type 0 178 48 2359 83 7 13 chr12 3056834 3057136 -140729319 + AluSg SINE Alu 1 300 -10 265 250 68 119 chr12 3057136 3057172 -140729283 - MER5B DNA MER1_type -130 48 12 2165 107 7 4 chr12 3057294 3057612 -140728843 - AluSx SINE Alu 0 319 1 216 0 0 0 chr12 3057619 3057643 -140728812 + (T)n Simple_repeat Simple_repeat 1 24 0 1146 108 25 0 chr12 3057658 3057815 -140728640 + AluSp SINE Alu 134 294 -19 1130 126 133 96 chr12 3057830 3057878 -140728577 - MER7C DNA MER2_type -2723 305 260 218 81 27 0 chr12 3057878 3057915 -140728540 + (TGAG)n Simple_repeat Simple_repeat 1 38 0 1130 126 133 96 chr12 3057915 3057984 -140728471 - MER7C DNA MER2_type -2768 260 195 2096 127 0 3 chr12 3057984 3058283 -140728172 - AluSx SINE Alu -14 298 1 195 48 48 24 chr12 3058289 3058331 -140728124 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2193 114 0 0 chr12 3058338 3058619 -140727836 - AluSx SINE Alu -31 281 1 1130 126 133 96 chr12 3058619 3058778 -140727677 - MER7C DNA MER2_type -2842 186 2 249 298 12 0 chr12 3058845 3058929 -140727526 - L2 LINE L2 -51 3262 3178 321 192 70 109 chr12 3058997 3059010 -140727445 + MIR SINE MIR 80 92 -170 1765 169 14 7 chr12 3059010 3059305 -140727150 - AluJo SINE Alu -15 297 1 321 192 70 109 chr12 3059305 3059363 -140727092 + MIR SINE MIR 92 151 -111 2215 96 23 7 chr12 3059363 3059666 -140726789 + AluSx SINE Alu 1 308 -4 321 192 70 109 chr12 3059666 3059749 -140726706 + MIR SINE MIR 151 229 -33 2466 74 10 0 chr12 3059916 3060213 -140726242 - AluSq SINE Alu -13 300 1 306 67 0 0 chr12 3060218 3060263 -140726192 + (TTTTTG)n Simple_repeat Simple_repeat 4 48 0 2227 99 3 0 chr12 3060671 3060965 -140725490 - AluSp SINE Alu -18 295 1 223 288 85 25 chr12 3060980 3061098 -140725357 - MIR SINE MIR -44 218 94 205 258 118 0 chr12 3061250 3061343 -140725112 + L2 LINE L2 3160 3263 -9 451 288 162 21 chr12 3062724 3062915 -140723540 - MIR SINE MIR -43 219 2 2206 103 10 3 chr12 3063011 3063303 -140723152 - AluSq SINE Alu -19 294 1 489 348 14 43 chr12 3066510 3066589 -140719866 + L1ME4a LINE L1 4932 5012 -1134 431 134 134 0 chr12 3066589 3066671 -140719784 + HY4 scRNA scRNA 1 93 0 489 348 14 43 chr12 3066671 3066873 -140719582 + L1ME4a LINE L1 5012 5205 -941 1364 183 77 18 chr12 3066879 3067152 -140719303 + AluJb SINE Alu 19 307 -5 2292 84 31 0 chr12 3067232 3067519 -140718936 + AluSx SINE Alu 1 296 -16 2430 81 0 3 chr12 3067527 3067823 -140718632 + AluSg SINE Alu 1 295 -15 718 318 65 31 chr12 3067844 3067972 -140718483 + L1ME4a LINE L1 5305 5427 -735 701 72 0 0 chr12 3067972 3068069 -140718386 + L1PB1 LINE L1 6054 6150 -1 718 318 65 31 chr12 3068069 3068539 -140717916 + L1ME4a LINE L1 5427 5887 -275 2440 93 0 0 chr12 3068539 3068839 -140717616 + AluSg SINE Alu 1 300 -10 718 318 65 31 chr12 3068839 3068876 -140717579 + L1ME4a LINE L1 5887 5921 -241 23 39 0 39 chr12 3069158 3069182 -140717273 + AT_rich Low_complexity Low_complexity 1 24 -26 1679 187 0 37 chr12 3069182 3069482 -140716973 - AluJo SINE Alu -23 289 1 23 39 0 39 chr12 3069482 3069509 -140716946 + AT_rich Low_complexity Low_complexity 24 50 0 902 171 51 37 chr12 3069701 3069917 -140716538 + MER20 DNA MER1_type 1 219 0 1829 157 10 23 chr12 3070030 3070335 -140716120 - AluJo SINE Alu -11 301 1 2290 93 20 3 chr12 3070345 3070645 -140715810 - AluSg SINE Alu -5 305 1 2537 88 0 0 chr12 3072284 3072592 -140713863 - AluSp SINE Alu -4 309 2 363 294 52 15 chr12 3072618 3072754 -140713701 - MER5A DNA MER1_type -6 183 43 * 511 282 20 13 chr12 3072636 3072785 -140713670 + MER5A DNA MER1_type 40 189 0 2179 137 0 0 chr12 3073511 3073811 -140712644 + AluSx SINE Alu 1 300 -12 1299 169 118 32 chr12 3073823 3074102 -140712353 + AluJb SINE Alu 1 303 -9 1495 36 0 0 chr12 3074151 3074316 -140712139 + AluY SINE Alu 131 295 -16 2430 84 3 16 chr12 3074334 3074644 -140711811 + AluSx SINE Alu 1 306 -6 243 246 53 0 chr12 3075529 3075586 -140710869 - MIR3 SINE MIR -3 205 146 184 320 0 0 chr12 3075743 3075793 -140710662 + MIR SINE MIR 37 86 -122 1732 154 3 63 chr12 3075911 3076077 -140710378 - AluJb SINE Alu -13 299 159 2370 94 3 7 chr12 3076077 3076376 -140710079 - AluSq SINE Alu -14 299 2 1732 154 3 63 chr12 3076376 3076527 -140709928 - AluJb SINE Alu -153 159 1 332 225 67 34 chr12 3076536 3076625 -140709830 - L1ME3 LINE L1 -1 6161 6070 1992 138 52 0 chr12 3076626 3076916 -140709539 - AluSp SINE Alu -8 305 1 1874 120 3 46 chr12 3076940 3077023 -140709432 + L1PA15 LINE L1 5854 5939 -226 2366 88 0 0 chr12 3077023 3077317 -140709138 + AluSc SINE Alu 1 294 -15 2371 92 3 0 chr12 3077319 3077623 -140708832 + AluSg SINE Alu 1 305 -5 1874 120 3 46 chr12 3077623 3077862 -140708593 + L1PA15 LINE L1 5940 6165 0 2021 124 7 20 chr12 3078006 3078304 -140708151 + AluJb SINE Alu 1 294 -18 188 320 98 52 chr12 3078458 3078611 -140707844 - L2 LINE L2 -15 3257 3098 2264 106 30 0 chr12 3078968 3079269 -140707186 + AluSx SINE Alu 1 310 -2 1253 182 0 10 chr12 3079495 3079704 -140706751 + AluJo SINE Alu 86 292 -20 2383 112 0 3 chr12 3079756 3080068 -140706387 + AluSx SINE Alu 1 311 -1 667 167 0 0 chr12 3080072 3080186 -140706269 + FLAM_C SINE Alu 2 115 -18 2243 101 13 7 chr12 3080210 3080518 -140705937 - AluSx SINE Alu -2 310 1 2467 97 0 0 chr12 3081623 3081933 -140704522 - AluSx SINE Alu -2 310 1 360 174 14 0 chr12 3082082 3082151 -140704304 - MER91C DNA MER1_type -8 132 63 1828 91 20 20 chr12 3082392 3082644 -140703811 - AluSq SINE Alu -4 309 58 1966 81 18 15 chr12 3132644 3132916 -140653539 - AluSq SINE Alu -40 273 1 22 88 0 0 chr12 3133856 3133913 -140652542 + GC_rich Low_complexity Low_complexity 1 57 0 358 243 72 79 chr12 3134593 3134745 -140651710 - L2 LINE L2 0 3272 3122 1806 133 31 0 chr12 3134754 3135040 -140651415 + AluJb SINE Alu 1 295 -17 329 296 124 94 chr12 3135193 3135791 -140650664 - L2 LINE L2 -350 2964 2349 1725 187 0 13 chr12 3135844 3136159 -140650296 - AluJb SINE Alu -1 311 1 1881 150 0 7 chr12 3136183 3136489 -140649966 - AluJb SINE Alu -8 304 1 312 321 98 10 chr12 3136489 3136682 -140649773 - L2 LINE L2 -964 2350 2141 * 385 274 120 101 chr12 3136661 3136889 -140649566 - L2 LINE L2 -1737 1577 1355 1498 163 71 27 chr12 3136889 3137184 -140649271 + AluJo SINE Alu 1 308 -4 2101 95 14 3 chr12 3137190 3137486 -140648969 + AluSx SINE Alu 1 299 -13 1711 166 7 17 chr12 3137493 3137794 -140648661 - AluJo SINE Alu -14 298 1 385 274 120 101 chr12 3137794 3137908 -140648547 - L2 LINE L2 -1968 1346 1213 2078 120 0 0 chr12 3137957 3138258 -140648197 - AluSx SINE Alu -11 301 1 651 228 37 15 chr12 3138269 3138405 -140648050 + L2 LINE L2 3175 3313 0 2211 105 7 0 chr12 3138480 3138784 -140647671 + AluSg SINE Alu 1 306 -4 210 243 54 40 chr12 3138934 3139008 -140647447 + L2 LINE L2 1820 1894 -1420 806 134 0 0 chr12 3139015 3139134 -140647321 + FLAM_C SINE Alu 1 119 -24 342 0 0 0 chr12 3139134 3139172 -140647283 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 1776 155 0 13 chr12 3139272 3139582 -140646873 + AluSx SINE Alu 1 306 -6 203 283 0 0 chr12 3139609 3139655 -140646800 - L2 LINE L2 -239 3074 3029 1525 177 3 25 chr12 3139658 3139941 -140646514 + AluJo SINE Alu 25 301 -11 1715 172 14 0 chr12 3139956 3140252 -140646203 + AluJb SINE Alu 5 304 -8 324 0 0 0 chr12 3140332 3140368 -140646087 + (TA)n Simple_repeat Simple_repeat 2 37 0 2456 50 7 0 chr12 3140368 3140671 -140645784 - AluSp SINE Alu -8 305 1 462 272 20 20 chr12 3140677 3140824 -140645631 + L1MC5 LINE L1 7763 7909 -52 189 74 0 0 chr12 3140906 3140933 -140645522 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1989 93 3 34 chr12 3140935 3141088 -140645367 - AluSx SINE Alu -30 282 126 180 0 0 0 chr12 3141088 3141108 -140645347 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1829 131 25 0 chr12 3141108 3141382 -140645073 - AluSx SINE Alu -31 281 1 1989 93 3 34 chr12 3141382 3141518 -140644937 - AluSx SINE Alu -184 128 1 344 308 156 113 chr12 3141564 3141980 -140644475 + L2 LINE L2 2836 3269 -3 2558 48 0 3 chr12 3142418 3142730 -140643725 - AluY SINE Alu 0 311 1 2040 127 3 19 chr12 3143224 3143539 -140642916 + AluJb SINE Alu 1 310 -2 207 314 0 0 chr12 3143722 3143773 -140642682 - MIR SINE MIR 0 262 212 411 194 86 11 chr12 3143805 3143898 -140642557 - L2 LINE L2 -18 3254 3155 1828 157 3 7 chr12 3143916 3144051 -140642404 + AluSx SINE Alu 1 135 -177 2013 134 3 0 chr12 3144051 3144356 -140642099 + AluSq SINE Alu 1 306 -7 1828 157 3 7 chr12 3144356 3144519 -140641936 + AluSx SINE Alu 135 298 -14 290 241 17 0 chr12 3144559 3144617 -140641838 - MIR SINE MIR -60 148 90 1707 129 4 7 chr12 3145384 3145655 -140640800 - AluSq SINE Alu -13 300 31 193 224 233 17 chr12 3146412 3146528 -140639927 - MIR SINE MIR -88 174 34 1734 124 7 7 chr12 3146818 3147093 -140639362 + AluSx SINE Alu 14 288 -24 1221 165 30 66 chr12 3148626 3148750 -140637705 + AluJo SINE Alu 1 128 -184 180 0 0 0 chr12 3148750 3148770 -140637685 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1221 165 30 66 chr12 3148770 3148948 -140637507 + AluJo SINE Alu 128 292 -20 2293 83 0 0 chr12 3149364 3149665 -140636790 - AluSc SINE Alu -8 301 1 1546 163 29 10 chr12 3149712 3150018 -140636437 - AluJb SINE Alu 0 312 1 2014 92 28 0 chr12 3150183 3150466 -140635989 - AluSp SINE Alu -12 301 11 901 126 7 0 chr12 3150664 3150799 -140635656 - AluJo SINE Alu -176 136 1 1807 112 3 70 chr12 3151087 3151394 -140635061 + AluSx SINE Alu 1 287 -20 309 51 0 0 chr12 3151394 3151433 -140635022 + (CA)n Simple_repeat Simple_repeat 2 40 0 1888 139 0 4 chr12 3151469 3151775 -140634680 + AluSg SINE Alu 1 305 0 1736 150 64 27 chr12 3152548 3152799 -140633656 - MER7A DNA MER2_type -2692 346 81 2167 105 3 3 chr12 3152799 3153095 -140633360 - AluSx SINE Alu -16 296 1 1736 150 64 27 chr12 3153095 3153173 -140633282 - MER7A DNA MER2_type -2957 81 7 209 146 91 73 chr12 3153549 3153604 -140632851 - MIR SINE MIR -85 177 122 187 278 62 104 chr12 3153651 3153795 -140632660 + MIR SINE MIR 112 249 -13 1992 108 17 3 chr12 3153877 3154165 -140632290 - AluSx SINE Alu -20 292 1 682 149 0 50 chr12 3154340 3154461 -140631994 + FLAM_C SINE Alu 3 117 -16 651 195 47 8 chr12 3154483 3154611 -140631844 - FLAM_C SINE Alu 0 133 1 244 28 0 0 chr12 3154611 3154647 -140631808 + Alu SINE Alu 285 320 0 2106 106 3 3 chr12 3154652 3154954 -140631501 + AluSq SINE Alu 1 302 -11 370 281 26 26 chr12 3154973 3155087 -140631368 - MIR SINE MIR -47 215 102 718 181 0 15 chr12 3155186 3155319 -140631136 - FLAM_A SINE Alu -11 131 1 780 198 47 41 chr12 3155326 3155498 -140630957 - MER58B DNA MER1_type -14 327 155 1622 156 11 0 chr12 3155557 3155832 -140630623 - AluJo SINE Alu -32 280 3 735 144 40 87 chr12 3155833 3155919 -140630536 - MER58B DNA MER1_type -176 165 89 2228 86 3 0 chr12 3155919 3156220 -140630235 + AluSp SINE Alu 1 302 -11 735 144 40 87 chr12 3156220 3156306 -140630149 - MER58B DNA MER1_type -252 89 1 2461 71 0 0 chr12 3156467 3156778 -140629677 + AluY SINE Alu 1 311 0 1848 121 10 33 chr12 3156791 3157096 -140629359 + AluSx SINE Alu 4 301 -11 1396 161 74 18 chr12 3157577 3157862 -140628593 - AluJb SINE Alu -11 301 1 446 209 0 0 chr12 3157865 3157956 -140628499 - L1ME LINE L1 -727 5437 5347 948 133 42 6 chr12 3157982 3158147 -140628308 - AluJb SINE Alu -22 290 120 180 0 0 0 chr12 3158148 3158168 -140628287 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 263 120 0 40 chr12 3158168 3158218 -140628237 - FLAM_A SINE Alu 0 133 86 1934 126 0 3 chr12 3158229 3158538 -140627917 - AluSx SINE Alu 0 308 1 742 210 70 0 chr12 3158538 3158724 -140627731 - L1ME LINE L1 -821 5325 5127 2033 132 0 0 chr12 3159720 3160015 -140626440 - AluSx SINE Alu -15 297 3 869 210 46 67 chr12 3160117 3160136 -140626319 - L1MD3 LINE L1 0 8042 8024 2306 87 3 0 chr12 3160136 3160447 -140626008 + AluSp SINE Alu 1 312 -1 869 210 46 67 chr12 3160447 3160627 -140625828 - L1MD3 LINE L1 -18 8024 7832 2181 93 0 13 chr12 3160627 3160937 -140625518 - AluSg SINE Alu -4 306 1 869 210 46 67 chr12 3160937 3161074 -140625381 - L1MD3 LINE L1 -210 7832 7694 801 191 0 0 chr12 3161210 3161357 -140625098 - FRAM SINE Alu -29 147 1 1818 96 75 21 chr12 3161673 3161953 -140624502 + AluSx SINE Alu 1 295 -17 2278 88 0 0 chr12 3162043 3162339 -140624116 - AluSc SINE Alu -13 296 1 24 0 0 0 chr12 3162383 3162407 -140624048 + AT_rich Low_complexity Low_complexity 1 24 0 522 158 0 0 chr12 3162806 3162888 -140623567 + AluSg/x SINE Alu 209 290 -19 1983 113 3 3 chr12 3162888 3163180 -140623275 - AluSg SINE Alu -14 296 5 2041 112 3 13 chr12 3163180 3163484 -140622971 - AluSx SINE Alu -11 301 1 25 0 0 0 chr12 3163484 3163509 -140622946 + AT_rich Low_complexity Low_complexity 1 25 0 1942 95 0 18 chr12 3163511 3163810 -140622645 + AluSq SINE Alu 23 313 0 2076 114 0 10 chr12 3163911 3164046 -140622409 + AluSx SINE Alu 1 136 -176 1897 117 10 26 chr12 3164046 3164354 -140622101 + AluSc SINE Alu 1 303 -6 2076 114 0 10 chr12 3164354 3164517 -140621938 + AluSx SINE Alu 136 296 -16 1662 128 40 10 chr12 3165281 3165577 -140620878 - AluSg SINE Alu -5 305 1 21 0 0 0 chr12 3165865 3165886 -140620569 + AT_rich Low_complexity Low_complexity 1 21 0 387 349 27 7 chr12 3165963 3166109 -140620346 + MIR SINE MIR 109 257 -5 1920 71 68 11 chr12 3166866 3167146 -140619309 + AluY SINE Alu 1 296 -15 339 359 46 8 chr12 3167196 3167327 -140619128 + L2 LINE L2 3136 3271 -1 2215 68 0 42 chr12 3168212 3168520 -140617935 - AluY SINE Alu -16 295 1 387 0 0 0 chr12 3168520 3168563 -140617892 + (T)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr12 3168630 3168651 -140617804 + AT_rich Low_complexity Low_complexity 1 21 0 629 206 0 53 chr12 3168702 3168833 -140617622 + FLAM_A SINE Alu 5 128 -5 516 290 41 26 chr12 3168962 3169117 -140617338 + MIR3 SINE MIR 2 162 -46 697 62 21 0 chr12 3169822 3169918 -140616537 - AluSc SINE Alu -4 305 208 875 94 16 8 chr12 3169927 3170055 -140616400 - L1M4 LINE L1 -656 5522 5394 303 28 0 0 chr12 3170057 3170093 -140616362 + (TG)n Simple_repeat Simple_repeat 1 36 0 1679 166 0 50 chr12 3170099 3170419 -140616036 - AluJo SINE Alu -8 304 1 362 230 74 67 chr12 3170419 3170454 -140616001 - L1M4 LINE L1 -1109 5037 5004 2243 103 0 0 chr12 3170454 3170764 -140615691 - AluSg SINE Alu 0 310 1 362 230 74 67 chr12 3170764 3170783 -140615672 - L1M4 LINE L1 -1142 5004 4987 1417 94 18 101 chr12 3170783 3170978 -140615477 - L1MA4 LINE L1 -11 6289 6122 2286 93 3 0 chr12 3170978 3171279 -140615176 - AluSp SINE Alu -11 302 1 1417 94 18 101 chr12 3171279 3171359 -140615096 - L1MA4 LINE L1 -178 6122 6037 362 230 74 67 chr12 3171359 3171438 -140615017 - L1M4 LINE L1 -1159 4987 4902 1923 147 0 0 chr12 3171494 3171787 -140614668 - AluSx SINE Alu -18 294 2 1927 127 0 7 chr12 3171838 3172145 -140614310 - AluSx SINE Alu 0 305 1 2212 87 0 22 chr12 3172388 3172699 -140613756 - AluSc SINE Alu -5 304 1 1842 112 47 4 chr12 3172874 3173152 -140613303 - AluSx SINE Alu -17 295 6 1701 100 0 0 chr12 3174110 3174340 -140612115 + AluSg/x SINE Alu 66 295 -17 2345 71 0 0 chr12 3174451 3174747 -140611708 + AluY SINE Alu 1 296 -15 1271 112 0 21 chr12 3174764 3174952 -140611503 + AluSq SINE Alu 106 289 -24 2176 83 13 0 chr12 3174967 3175267 -140611188 - AluSx SINE Alu -8 304 1 2152 99 3 0 chr12 3175403 3175695 -140610760 - AluSp SINE Alu -20 293 1 2093 99 3 23 chr12 3175745 3176047 -140610408 - AluSx SINE Alu -16 296 1 1807 157 7 0 chr12 3177083 3177382 -140609073 + AluJb SINE Alu 1 301 -11 312 169 143 13 chr12 3177458 3177535 -140608920 + MIR SINE MIR 100 186 -76 2175 80 3 10 chr12 3177995 3178295 -140608160 - AluSq SINE Alu -14 299 2 1755 178 3 0 chr12 3178657 3178950 -140607505 + AluJo SINE Alu 1 294 -18 2342 53 0 20 chr12 3179711 3180014 -140606441 - AluY SINE Alu -14 297 1 198 246 66 33 chr12 3180018 3180079 -140606376 - MIR SINE MIR -86 176 114 192 291 0 36 chr12 3180081 3180136 -140606319 - L2 LINE L2 -12 3301 3249 1952 111 36 13 chr12 3180228 3180534 -140605921 + AluSq SINE Alu 1 313 0 1691 162 0 30 chr12 3180547 3180850 -140605605 + AluJb SINE Alu 3 296 -16 417 317 89 85 chr12 3180866 3181251 -140605204 - L2 LINE L2 -15 3257 2875 1561 182 10 19 chr12 3181251 3181559 -140604896 + AluJo SINE Alu 1 305 -7 894 186 6 12 chr12 3181566 3181727 -140604728 + FRAM SINE Alu 4 163 -3 417 317 89 85 chr12 3181727 3181751 -140604704 - L2 LINE L2 -402 2870 2848 2165 63 31 14 chr12 3181751 3182038 -140604417 + AluY SINE Alu 1 292 -19 417 317 89 85 chr12 3182038 3182176 -140604279 - L2 LINE L2 -424 2848 2619 180 259 241 0 chr12 3182376 3182434 -140604021 - MIR SINE MIR -8 254 183 1639 132 66 11 chr12 3183074 3183346 -140603109 + AluJb SINE Alu 2 288 -24 2294 173 56 18 chr12 3183405 3183475 -140602980 - L1MB8 LINE L1 0 6178 6112 1705 150 3 19 chr12 3183475 3183782 -140602673 + AluSq SINE Alu 1 302 -11 2294 173 56 18 chr12 3183782 3184214 -140602241 - L1MB8 LINE L1 -66 6112 5657 2020 108 42 0 chr12 3184222 3184508 -140601947 - AluSg SINE Alu -12 298 1 2246 103 3 0 chr12 3185104 3185416 -140601039 + AluSp SINE Alu 1 313 0 237 91 0 68 chr12 3185467 3185511 -140600944 - L1MB4 LINE L1 0 6180 6140 2095 103 0 7 chr12 3185516 3185806 -140600649 + AluSx SINE Alu 1 288 -24 281 140 53 18 chr12 3185821 3185878 -140600577 + U7 snRNA snRNA 2 60 -3 1084 181 112 84 chr12 3185910 3185936 -140600519 - AluJo SINE Alu -7 295 271 2040 36 4 0 chr12 3185936 3186183 -140600272 + AluY SINE Alu 45 292 -19 1084 181 112 84 chr12 3186183 3186234 -140600221 - AluJo SINE Alu -30 272 2 734 231 125 19 chr12 3186234 3186442 -140600013 - AluJo SINE Alu -81 231 2 2304 94 17 0 chr12 3186447 3186744 -140599711 - AluY SINE Alu -9 302 1 1294 154 23 0 chr12 3186753 3186973 -140599482 - L1MB4 LINE L1 -29 6151 5927 2504 87 0 0 chr12 3187267 3187578 -140598877 - AluY SINE Alu 0 311 1 583 311 51 8 chr12 3188657 3188892 -140597563 - MIR SINE MIR -5 257 13 2071 148 0 3 chr12 3189152 3189455 -140597000 + AluSx SINE Alu 1 302 -10 568 220 0 0 chr12 3189561 3189670 -140596785 - FLAM_A SINE Alu -33 109 1 2496 84 3 0 chr12 3189788 3190096 -140596359 - AluY SINE Alu -2 309 1 189 107 0 0 chr12 3190496 3190524 -140595931 + (A)n Simple_repeat Simple_repeat 1 28 0 2091 141 3 0 chr12 3190524 3190823 -140595632 + AluSx SINE Alu 1 300 -12 1846 164 3 13 chr12 3190827 3191137 -140595318 + AluJo SINE Alu 6 312 0 300 282 121 77 chr12 3191509 3191849 -140594606 - L1MCa LINE L1 -5146 1280 926 243 299 91 0 chr12 3192297 3192374 -140594081 + L2 LINE L2 3229 3312 -1 1931 130 20 7 chr12 3192546 3192838 -140593617 + AluJb SINE Alu 1 296 -16 2327 92 0 10 chr12 3192840 3193143 -140593312 + AluSx SINE Alu 1 300 -12 2033 86 45 41 chr12 3193324 3193616 -140592839 + AluSp SINE Alu 1 293 -20 2151 81 37 37 chr12 3193681 3193976 -140592479 + AluSc SINE Alu 1 295 -14 2577 74 3 0 chr12 3194059 3194371 -140592084 - AluSq SINE Alu 0 313 1 1901 117 60 7 chr12 3195369 3195652 -140590803 + AluJb SINE Alu 1 298 -14 1813 149 4 18 chr12 3195827 3196108 -140590347 + AluJb SINE Alu 28 304 -8 2131 133 0 3 chr12 3198070 3198370 -140588085 + AluSx SINE Alu 1 299 -13 1818 129 92 4 chr12 3198695 3198966 -140587489 - AluSg SINE Alu -15 295 1 1275 110 0 0 chr12 3198966 3199139 -140587316 - AluSc SINE Alu -2 307 135 1667 178 31 3 chr12 3199151 3199437 -140587018 - AluJb SINE Alu -18 294 1 1904 133 61 0 chr12 3199481 3199759 -140586696 + AluSq SINE Alu 2 296 -17 2130 135 10 0 chr12 3199974 3200278 -140586177 - AluJb SINE Alu -5 307 1 2688 58 0 0 chr12 3200604 3200915 -140585540 - AluY SINE Alu 0 311 1 2258 53 88 0 chr12 3201840 3202123 -140584332 + AluY SINE Alu 2 309 -2 1864 136 16 52 chr12 3202211 3202521 -140583934 - AluJb SINE Alu -13 299 1 1810 130 44 0 chr12 3202567 3202837 -140583618 + AluJo SINE Alu 11 292 -20 2699 39 0 3 chr12 3203384 3203690 -140582765 + AluY SINE Alu 1 305 -6 2327 95 7 0 chr12 3203831 3204125 -140582330 + AluSx SINE Alu 5 300 -12 2573 52 0 16 chr12 3204261 3204571 -140581884 - AluY SINE Alu -5 306 2 723 162 143 19 chr12 3204619 3204773 -140581682 + FRAM SINE Alu 1 173 -3 451 260 101 54 chr12 3204798 3204840 -140581615 + L1MC4a LINE L1 5741 5780 -2028 1308 200 0 123 chr12 3204840 3205190 -140581265 + AluSx SINE Alu 1 307 -5 451 260 101 54 chr12 3205190 3205424 -140581031 + L1MC4a LINE L1 5780 6030 -1778 1888 174 7 0 chr12 3205467 3205766 -140580689 - AluJb SINE Alu -11 301 1 2113 130 3 0 chr12 3205824 3206131 -140580324 - AluSx SINE Alu 0 308 1 857 169 12 44 chr12 3206137 3206297 -140580158 - AluJb SINE Alu -25 287 133 530 150 242 8 chr12 3206459 3206579 -140579876 - MER3 DNA MER1_type -24 185 38 2189 142 0 0 chr12 3206579 3206890 -140579565 - AluSx SINE Alu -1 311 1 956 186 0 0 chr12 3206891 3207052 -140579403 - AluSg/x SINE Alu -15 295 135 1573 175 110 11 chr12 3207577 3207932 -140578523 - MLT1B LTR MaLR 0 390 1 1939 164 3 10 chr12 3207978 3208282 -140578173 - AluJb SINE Alu -10 302 1 212 0 36 0 chr12 3208367 3208395 -140578060 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 712 127 0 0 chr12 3208419 3208529 -140577926 + AluJb SINE Alu 185 294 -18 1140 53 8 0 chr12 3208529 3208661 -140577794 + AluSc SINE Alu 1 133 -176 2052 114 17 3 chr12 3208661 3208951 -140577504 + AluSx SINE Alu 1 294 -18 2502 81 3 0 chr12 3208953 3209263 -140577192 + AluY SINE Alu 1 311 0 990 120 0 0 chr12 3209372 3209505 -140576950 + AluSq/x SINE Alu 1 133 -180 21 0 0 0 chr12 3209507 3209528 -140576927 + AT_rich Low_complexity Low_complexity 1 21 0 1637 195 13 23 chr12 3209645 3209953 -140576502 + AluJb SINE Alu 1 305 -7 408 72 0 14 chr12 3210236 3210305 -140576150 - L1MA9 LINE L1 -5 6307 6240 547 75 88 0 chr12 3210305 3210385 -140576070 - AluY SINE Alu -24 287 201 * 699 103 28 9 chr12 3210379 3210486 -140575969 - AluSq/x SINE Alu -202 110 2 2375 72 3 3 chr12 3210490 3210781 -140575674 - AluSc SINE Alu -18 291 1 2615 50 0 0 chr12 3210781 3211078 -140575377 - AluY SINE Alu -14 297 1 198 0 0 0 chr12 3211078 3211100 -140575355 + (T)n Simple_repeat Simple_repeat 1 22 0 514 86 108 21 chr12 3211101 3211194 -140575261 - U6 snRNA snRNA -6 101 1 2347 60 0 3 chr12 3211336 3211642 -140574813 + AluY SINE Alu 1 305 0 1230 148 0 0 chr12 3211649 3211825 -140574630 + AluSp SINE Alu 137 312 -1 2454 87 3 0 chr12 3211925 3212236 -140574219 - AluSp SINE Alu -1 312 1 2214 117 0 3 chr12 3212237 3212535 -140573920 - AluSq SINE Alu -16 297 1 1881 171 0 25 chr12 3212590 3212906 -140573549 - AluJb SINE Alu 0 312 5 2373 98 10 0 chr12 3213524 3213830 -140572625 - AluSp SINE Alu -4 309 1 283 312 115 10 chr12 3214078 3214307 -140572148 + L2 LINE L2 2775 3026 -246 24 0 0 0 chr12 3214462 3214486 -140571969 + AT_rich Low_complexity Low_complexity 1 24 0 992 128 0 2 chr12 3214487 3214723 -140571732 - AluJb SINE Alu -27 285 5 547 345 39 4 chr12 3214805 3215034 -140571421 - MARNA DNA Mariner -4 582 346 253 79 0 0 chr12 3215200 3215238 -140571217 - MARNA DNA Mariner -242 344 307 207 261 0 29 chr12 3215423 3215492 -140570963 + L2 LINE L2 3140 3206 -66 229 62 42 21 chr12 3216094 3216142 -140570313 + (CCCGG)n Simple_repeat Simple_repeat 3 51 0 32 67 0 0 chr12 3216343 3216403 -140570052 + GC_rich Low_complexity Low_complexity 1 60 0 211 308 0 26 chr12 3218372 3218450 -140568005 + MIR3 SINE MIR 4 79 -129 210 314 0 0 chr12 3218712 3218763 -140567692 - L2 LINE L2 -5 3267 3217 438 228 0 63 chr12 3218933 3218947 -140567508 - MIR3 SINE MIR -47 161 148 1736 71 141 31 chr12 3218947 3219119 -140567336 - AluSx SINE Alu 0 333 181 492 95 0 0 chr12 3219119 3219203 -140567252 + (TA)n Simple_repeat Simple_repeat 2 85 0 2283 101 3 0 chr12 3219203 3219490 -140566965 - AluSp SINE Alu -25 288 1 1736 71 141 31 chr12 3219490 3219621 -140566834 - AluSx SINE Alu -151 182 1 438 228 0 63 chr12 3219621 3219732 -140566723 - MIR3 SINE MIR -60 148 43 2267 101 0 49 chr12 3221303 3221629 -140564826 - AluSp SINE Alu -3 310 1 1769 166 23 26 chr12 3222008 3222315 -140564140 - AluJo SINE Alu -6 306 1 2251 60 32 7 chr12 3222416 3222699 -140563756 - AluY SINE Alu -21 290 1 27 29 0 0 chr12 3222699 3222733 -140563722 + AT_rich Low_complexity Low_complexity 1 34 0 849 168 8 0 chr12 3222736 3222867 -140563588 - AluJb SINE Alu -31 281 150 335 319 84 37 chr12 3223004 3223195 -140563260 + L3 LINE CR1 438 637 -940 2286 111 7 7 chr12 3223259 3223565 -140562890 - AluSg SINE Alu -3 307 2 2339 105 0 0 chr12 3223568 3223862 -140562593 - AluSx SINE Alu -18 294 1 270 267 56 11 chr12 3223886 3223976 -140562479 + L3 LINE CR1 715 808 -769 391 267 170 30 chr12 3223990 3224361 -140562094 - L1ME4a LINE L1 -15 6106 5684 409 280 30 30 chr12 3224370 3224502 -140561953 + L3 LINE CR1 794 925 -652 229 302 62 21 chr12 3224520 3224616 -140561839 - MIR SINE MIR -6 256 157 2485 83 3 0 chr12 3224939 3225241 -140561214 - AluSp SINE Alu -10 303 1 1080 138 16 122 chr12 3225241 3225495 -140560960 - AluJo SINE Alu -1 311 85 185 0 40 0 chr12 3225495 3225520 -140560935 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1818 160 0 24 chr12 3225523 3225811 -140560644 - AluJo SINE Alu -31 281 1 944 221 88 48 chr12 3225973 3226303 -140560152 - MER2 DNA MER2_type -1 343 1 296 316 32 0 chr12 3226326 3226421 -140560034 + L3 LINE CR1 1477 1574 -3 213 220 0 20 chr12 3226419 3226469 -140559986 + MIR3 SINE MIR 114 162 -46 * 870 163 0 7 chr12 3226800 3226935 -140559520 + FLAM_A SINE Alu 1 134 -8 844 198 47 9 chr12 3226938 3227150 -140559305 - MER33 DNA MER1_type -83 241 22 471 231 267 15 chr12 3227152 3227347 -140559108 + MIR SINE MIR 14 257 -5 271 271 59 0 chr12 3227918 3228003 -140558452 - L2 LINE L2 -27 3286 3197 2392 60 7 20 chr12 3228287 3228630 -140557825 - AluY SINE Alu 0 311 1 2263 123 0 0 chr12 3228656 3228957 -140557498 - AluSx SINE Alu 0 312 12 1880 156 0 11 chr12 3228957 3229237 -140557218 - AluJo SINE Alu -33 279 1 2613 65 0 3 chr12 3229347 3229653 -140556802 - AluSp SINE Alu -5 308 4 746 183 83 65 chr12 3229699 3229989 -140556466 - L1ME1 LINE L1 -5 6161 5867 1318 164 44 0 chr12 3229992 3230217 -140556238 - AluJb SINE Alu -77 235 1 270 135 14 122 chr12 3230220 3230294 -140556161 - L1ME1 LINE L1 -859 5287 5222 2173 106 26 10 chr12 3230856 3231158 -140555297 - AluSx SINE Alu -5 307 1 23 33 0 0 chr12 3231917 3231947 -140554508 + AT_rich Low_complexity Low_complexity 1 30 0 2385 176 50 32 chr12 3232039 3232212 -140554243 - L1MC2 LINE L1 -5 6339 6171 2282 99 3 0 chr12 3232212 3232543 -140553912 - AluSp SINE Alu 0 332 1 2385 176 50 32 chr12 3232543 3232864 -140553591 - L1MC2 LINE L1 -173 6171 5831 2192 112 3 23 chr12 3232864 3233167 -140553288 - AluSx SINE Alu -15 297 1 2385 176 50 32 chr12 3233167 3233205 -140553250 - L1MC2 LINE L1 -513 5831 5795 375 351 8 0 chr12 3233217 3233348 -140553107 - MIR SINE MIR -55 153 22 218 319 97 43 chr12 3233925 3234132 -140552323 - MIR SINE MIR -32 230 13 236 243 14 0 chr12 3234142 3234216 -140552239 + CT-rich Low_complexity Low_complexity 2 76 0 295 308 96 25 chr12 3234387 3234585 -140551870 - MIR SINE MIR -34 228 17 2007 165 27 87 chr12 3235066 3235232 -140551223 - L1MB3 LINE L1 -9 6174 6000 1898 118 34 34 chr12 3235232 3235558 -140550897 - AluSx SINE Alu 0 312 2 2007 165 27 87 chr12 3235558 3235769 -140550686 - L1MB3 LINE L1 -183 6000 5830 2417 89 0 0 chr12 3235769 3236071 -140550384 - AluSx SINE Alu -10 302 1 2007 165 27 87 chr12 3236071 3236177 -140550278 - L1MB3 LINE L1 -353 5830 5719 1208 212 62 50 chr12 3236197 3236536 -140549919 + MER82 DNA MER2_type 311 653 0 619 189 114 0 chr12 3236571 3236703 -140549752 - MSTD LTR MaLR -249 147 1 187 298 0 0 chr12 3236708 3236755 -140549700 + L2 LINE L2 3262 3308 -5 388 222 67 0 chr12 3236944 3237034 -140549421 + MIR SINE MIR 53 148 -60 2302 114 0 0 chr12 3237306 3237605 -140548850 + AluSx SINE Alu 1 299 -13 473 123 37 0 chr12 3237635 3237716 -140548739 + AluS SINE Alu 2 85 -228 340 339 62 0 chr12 3237788 3237965 -140548490 + MIR SINE MIR 57 244 -18 192 248 0 119 chr12 3238394 3238503 -140547952 + L2 LINE L2 3142 3237 -76 21 57 0 0 chr12 3240012 3240047 -140546408 + AT_rich Low_complexity Low_complexity 1 35 0 430 311 43 24 chr12 3240300 3240464 -140545991 - MIR3 SINE MIR -8 200 34 370 285 182 31 chr12 3240641 3240960 -140545495 - L2 LINE L2 -7 3265 2899 200 360 182 11 chr12 3241105 3241369 -140545086 - L2 LINE L2 -542 2772 2464 3225 113 26 85 chr12 3241371 3241973 -140544482 - Tigger3(Golem) DNA MER2_type 0 3029 2466 2414 78 0 3 chr12 3241973 3242267 -140544188 + AluY SINE Alu 16 308 -3 3225 113 26 85 chr12 3242267 3242309 -140544146 - Tigger3(Golem) DNA MER2_type -563 2466 2423 1312 85 0 0 chr12 3242442 3242651 -140543804 + AluY SINE Alu 121 329 0 361 305 126 23 chr12 3242771 3243073 -140543382 + L2 LINE L2 2124 2456 -858 1601 153 35 78 chr12 3243076 3243387 -140543068 + Tigger3(Golem) DNA MER2_type 1 324 -2704 2287 118 0 6 chr12 3243387 3243700 -140542755 - AluSx SINE Alu -1 311 1 1601 153 35 78 chr12 3243700 3243760 -140542695 + Tigger3(Golem) DNA MER2_type 324 2153 -875 606 269 188 43 chr12 3243894 3244314 -140542141 - MLT1H LTR MaLR -16 533 53 269 190 69 0 chr12 3247179 3247237 -140539218 + L2 LINE L2 3242 3303 -10 1890 162 3 13 chr12 3247461 3247763 -140538692 - AluJo SINE Alu -13 299 1 2268 92 7 0 chr12 3248118 3248431 -140538024 - AluSp SINE Alu 0 316 2 8512 40 10 14 chr12 3248459 3249457 -140536998 - SVA Other Other 0 1386 393 186 293 98 12 chr12 3249903 3249985 -140536470 + L2 LINE L2 3210 3298 -15 261 0 0 0 chr12 3249987 3250016 -140536439 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2366 49 17 21 chr12 3250151 3250439 -140536016 - AluY SINE Alu -2 309 23 345 292 62 9 chr12 3251601 3251714 -140534741 + MIR3 SINE MIR 87 205 -3 204 318 15 0 chr12 3251898 3251964 -140534491 + L3 LINE CR1 812 878 -699 2014 156 0 6 chr12 3252202 3252516 -140533939 - AluSx SINE Alu 0 312 1 3351 259 51 34 chr12 3252539 3253307 -140533148 - L1MEc LINE L1 -5063 1333 531 2584 50 0 10 chr12 3253307 3253610 -140532845 - AluY SINE Alu -11 300 1 3351 259 51 34 chr12 3253610 3254125 -140532330 - L1MEc LINE L1 -5865 531 27 535 321 139 29 chr12 3254475 3254921 -140531534 + L3 LINE CR1 1054 1548 -29 1665 184 3 14 chr12 3255585 3255879 -140530576 - AluJo SINE Alu -7 305 15 2598 53 0 10 chr12 3255902 3256204 -140530251 - AluY SINE Alu -12 299 1 443 167 0 10 chr12 3256208 3256309 -140530146 + L1MA7 LINE L1 6045 6153 -150 268 294 42 17 chr12 3256385 3256504 -140529951 - MIR SINE MIR -55 153 32 193 324 29 0 chr12 3256884 3256952 -140529503 - L2 LINE L2 -16 3256 3187 669 271 206 2 chr12 3257253 3257777 -140528678 - L2 LINE L2 -6 3307 2670 2176 141 0 3 chr12 3257808 3258121 -140528334 - AluJo SINE Alu 0 312 1 386 342 151 4 chr12 3258123 3258348 -140528107 - MIR SINE MIR -2 260 3 684 200 0 0 chr12 3259205 3259365 -140527090 + (CA)n Simple_repeat Simple_repeat 1 160 0 1813 170 0 3 chr12 3259964 3260271 -140526184 + AluJb SINE Alu 1 306 0 1699 233 71 99 chr12 3261728 3262417 -140524038 - HAL1 LINE L1 -839 1668 1012 2393 64 7 3 chr12 3262417 3262712 -140523743 - AluY SINE Alu -15 296 1 1699 233 71 99 chr12 3262712 3263003 -140523452 - HAL1 LINE L1 -1495 1012 715 2467 70 3 3 chr12 3263015 3263314 -140523141 + AluSq SINE Alu 2 300 -13 1193 255 184 22 chr12 3263315 3263852 -140522603 + HAL1 LINE L1 84 707 -1800 229 287 58 0 chr12 3264085 3264172 -140522283 + L2 LINE L2 3180 3271 -1 224 322 33 0 chr12 3264486 3264576 -140521879 + MIR3 SINE MIR 89 181 -27 544 307 13 42 chr12 3264835 3265073 -140521382 + MIR SINE MIR 20 250 -12 2106 118 13 26 chr12 3265104 3265410 -140521045 - AluSx SINE Alu -10 302 1 219 280 98 0 chr12 3265434 3265502 -140520953 - MIR SINE MIR -64 144 78 608 174 28 141 chr12 3265544 3265676 -140520779 - L1 LINE L1 -2711 3435 3290 2407 84 7 0 chr12 3265676 3265973 -140520482 - AluSp SINE Alu -14 299 1 608 174 28 141 chr12 3265973 3266164 -140520291 - L1 LINE L1 -2856 3290 3155 1683 188 9 31 chr12 3266164 3266483 -140519972 - AluJo SINE Alu 0 312 1 608 174 28 141 chr12 3266483 3266521 -140519934 - L1 LINE L1 -2991 3155 3114 670 265 151 12 chr12 3266548 3266872 -140519583 - L2 LINE L2 -8 3305 2937 277 289 56 106 chr12 3267506 3267588 -140518867 + L2 LINE L2 3138 3212 -60 1420 221 47 3 chr12 3267588 3267910 -140518545 - MER58B DNA MER1_type -4 337 2 277 289 56 106 chr12 3267910 3267969 -140518486 + L2 LINE L2 3212 3272 0 2209 113 27 0 chr12 3268066 3268359 -140518096 + AluSx SINE Alu 1 301 -11 3003 173 25 48 chr12 3268405 3268964 -140517491 - L1MB8 LINE L1 -10 6168 5627 1555 171 60 26 chr12 3268964 3269316 -140517139 - MLT1A1 LTR MaLR -1 364 1 3003 173 25 48 chr12 3269316 3269467 -140516988 - L1MB8 LINE L1 -551 5627 5474 433 290 34 111 chr12 3269724 3269986 -140516469 + MIR SINE MIR 9 250 -12 244 322 185 15 chr12 3270196 3270401 -140516054 - L3 LINE CR1 -223 1354 1115 455 293 105 6 chr12 3271504 3271685 -140514770 + MIR SINE MIR 45 243 -19 2416 93 7 0 chr12 3271761 3272071 -140514384 - AluSx SINE Alu 0 312 1 325 276 60 35 chr12 3272805 3272921 -140513534 - MIR SINE MIR -124 138 20 294 310 44 6 chr12 3273388 3273546 -140512909 + MIR3 SINE MIR 21 184 -24 322 274 85 13 chr12 3274465 3274618 -140511837 + MIR3 SINE MIR 23 186 -22 324 294 122 50 chr12 3274624 3274758 -140511697 - MIR SINE MIR -2 260 137 361 259 140 84 chr12 3274758 3274861 -140511594 + MER102b DNA MER1_type 3 99 -1329 1976 156 0 44 chr12 3274861 3275176 -140511279 - AluJb SINE Alu -11 301 1 361 259 140 84 chr12 3275176 3275393 -140511062 + MER102b DNA MER1_type 99 341 0 324 294 122 50 chr12 3275393 3275496 -140510959 - MIR SINE MIR -125 137 6 2332 47 54 0 chr12 3275553 3275830 -140510625 + AluY SINE Alu 1 292 -19 725 191 253 18 chr12 3275831 3276056 -140510399 - AluSg1 SINE Alu -30 279 2 512 281 41 12 chr12 3277138 3277309 -140509146 - MIR SINE MIR -3 259 84 425 272 44 34 chr12 3277842 3277930 -140508525 + L1ME4a LINE L1 5698 5784 -337 1975 93 86 11 chr12 3277930 3278208 -140508247 - AluSp SINE Alu -14 299 1 425 272 44 34 chr12 3278208 3278274 -140508181 + L1ME4a LINE L1 5784 5857 -264 1972 159 0 16 chr12 3278274 3278582 -140507873 + AluJo SINE Alu 1 303 -9 425 272 44 34 chr12 3278582 3278632 -140507823 + L1ME4a LINE L1 5857 5905 -216 329 256 128 17 chr12 3278650 3278767 -140507688 + L1ME4a LINE L1 5964 6093 -28 23 0 0 0 chr12 3278987 3279010 -140507445 + AT_rich Low_complexity Low_complexity 1 23 0 426 266 179 6 chr12 3279532 3279705 -140506750 + MIR SINE MIR 11 213 -49 1358 157 26 0 chr12 3279725 3279955 -140506500 - Tigger3b DNA MER2_type 0 1241 1006 252 151 0 19 chr12 3280011 3280054 -140506401 - Tigger3b DNA MER2_type -255 976 935 667 106 0 53 chr12 3280054 3280125 -140506330 - MSTA LTR MaLR 0 428 364 1630 158 102 11 chr12 3280125 3280410 -140506045 + AluJo SINE Alu 1 311 -1 667 106 0 53 chr12 3280410 3280451 -140506004 - MSTA LTR MaLR -64 364 322 591 141 11 0 chr12 3280461 3280553 -140505902 - FLAM_A SINE Alu -30 112 20 29 0 0 0 chr12 3280586 3280615 -140505840 + AT_rich Low_complexity Low_complexity 1 29 0 856 96 43 0 chr12 3280617 3280732 -140505723 + FLAM_C SINE Alu 1 120 -23 1270 119 50 54 chr12 3280732 3280858 -140505597 - Tigger3b DNA MER2_type -2565 463 338 2487 71 0 0 chr12 3280858 3281153 -140505302 - AluY SINE Alu -16 295 1 1270 119 50 54 chr12 3281153 3281287 -140505168 - Tigger3b DNA MER2_type -2690 338 204 592 149 0 47 chr12 3281297 3281404 -140505051 - FLAM_A SINE Alu -21 121 20 1136 191 15 0 chr12 3281430 3281629 -140504826 - Tigger3b DNA MER2_type -1026 205 4 730 142 18 0 chr12 3281943 3282056 -140504399 + FLAM_A SINE Alu 1 115 -18 2255 159 49 2 chr12 3282259 3282705 -140503750 - L1MB3 LINE L1 -2 6181 5715 729 329 29 0 chr12 3282971 3283217 -140503238 + MIR SINE MIR 4 256 -6 671 266 22 5 chr12 3284097 3284281 -140502174 + MIR SINE MIR 73 259 -3 287 287 167 6 chr12 3284641 3284815 -140501640 - MIR SINE MIR -6 256 55 421 309 60 20 chr12 3284902 3285103 -140501352 + MIR SINE MIR 53 261 -1 3799 174 30 14 chr12 3285267 3286030 -140500425 - L1MB5 LINE L1 -9 6165 5391 22 0 0 0 chr12 3286874 3286896 -140499559 + AT_rich Low_complexity Low_complexity 1 22 0 235 311 141 67 chr12 3287368 3287503 -140498952 + MIR SINE MIR 38 182 -80 434 276 115 29 chr12 3287840 3288014 -140498441 - MIR3 SINE MIR 0 208 20 1748 156 0 11 chr12 3288601 3288884 -140497571 - AluJo SINE Alu -32 280 1 218 179 0 54 chr12 3289757 3289813 -140496642 - MIR SINE MIR -182 80 28 307 291 29 10 chr12 3289900 3290003 -140496452 - MIR SINE MIR -55 207 103 217 250 36 12 chr12 3291473 3291557 -140494898 + MIR SINE MIR 39 124 -84 1241 145 24 121 chr12 3291960 3292257 -140494198 - AluJb SINE Alu -10 302 35 1698 145 81 7 chr12 3293062 3293345 -140493110 - AluJb SINE Alu -8 304 1 203 306 194 32 chr12 3293621 3293745 -140492710 + MER5C DNA MER1_type 4 147 -177 405 258 172 8 chr12 3295509 3295637 -140490818 - MIR SINE MIR -33 229 81 3241 196 33 130 chr12 3296263 3297579 -140488876 - L1MC4a LINE L1 -87 7721 6545 248 0 31 0 chr12 3297580 3297612 -140488843 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2004 116 14 0 chr12 3297615 3297899 -140488556 - AluSx SINE Alu -24 288 1 683 272 91 25 chr12 3297924 3298167 -140488288 + MLT1C LTR MaLR 200 458 -9 272 217 0 12 chr12 3299247 3299330 -140487125 + G-rich Low_complexity Low_complexity 5 86 0 284 279 7 7 chr12 3299352 3299502 -140486953 + G-rich Low_complexity Low_complexity 1 150 0 2260 79 3 10 chr12 3299595 3299912 -140486543 + AluSx SINE Alu 1 315 0 290 211 53 0 chr12 3299919 3300014 -140486441 - L1M4 LINE L1 -1554 4592 4493 2923 198 43 23 chr12 3300016 3300042 -140486413 + MER21B LTR ERV1 1 25 -838 2186 70 37 20 chr12 3300042 3300340 -140486115 + AluSq SINE Alu 1 303 -10 2923 198 43 23 chr12 3300340 3300971 -140485484 + MER21B LTR ERV1 25 671 -192 491 158 0 24 chr12 3300971 3301053 -140485402 - AluJ/FLAM SINE Alu -232 80 1 539 270 86 67 chr12 3301083 3301247 -140485208 - L1MEd LINE L1 -4715 1595 1436 2007 134 0 3 chr12 3301247 3301546 -140484909 - AluSx SINE Alu -9 303 6 539 270 86 67 chr12 3301546 3302098 -140484357 - L1MEd LINE L1 -4874 1436 826 410 366 114 25 chr12 3302102 3302271 -140484184 - L1MEd LINE L1 -5526 593 440 2104 121 16 0 chr12 3302271 3302577 -140483878 - AluSx SINE Alu -1 311 1 410 366 114 25 chr12 3302577 3302724 -140483731 - L1MEd LINE L1 -5679 440 249 1461 164 53 49 chr12 3302729 3303033 -140483422 + AluJo SINE Alu 1 305 -7 332 272 0 25 chr12 3303082 3303163 -140483292 - L1MEd LINE L1 -6037 82 4 2042 151 0 0 chr12 3303191 3303490 -140482965 + AluSx SINE Alu 1 299 -13 269 328 17 17 chr12 3303670 3303786 -140482669 + MIR SINE MIR 37 152 -56 2342 77 0 0 chr12 3303827 3304126 -140482329 - AluSx SINE Alu -13 299 1 1005 227 36 0 chr12 3304908 3305155 -140481300 - L1MB2 LINE L1 -2 6169 5914 557 126 0 23 chr12 3305171 3305258 -140481197 - AluJ/FLAM SINE Alu -227 85 1 1895 155 0 22 chr12 3305268 3305585 -140480870 - AluJb SINE Alu -2 310 1 1516 189 47 6 chr12 3305586 3305908 -140480547 - L1MB2 LINE L1 -222 5949 5611 2097 87 0 4 chr12 3305908 3306183 -140480272 - AluSx SINE Alu -38 274 1 1516 189 47 6 chr12 3306183 3306199 -140480256 - L1MB2 LINE L1 -560 5611 5597 208 366 12 0 chr12 3306320 3306402 -140480053 - MIR3 SINE MIR -41 167 85 224 241 52 0 chr12 3307176 3307234 -140479221 - L2 LINE L2 0 3272 3212 1704 169 0 22 chr12 3307528 3307847 -140478608 + AluJo SINE Alu 1 312 0 1091 134 0 12 chr12 3308188 3308203 -140478252 - AluSg/x SINE Alu -14 298 284 2192 106 3 6 chr12 3308203 3308515 -140477940 - AluSp SINE Alu 0 313 3 192 40 0 0 chr12 3308515 3308540 -140477915 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 1091 134 0 12 chr12 3308540 3308694 -140477761 - AluSg/x SINE Alu -26 286 130 768 237 72 47 chr12 3308758 3309037 -140477418 - MLT1J LTR MaLR 0 511 226 2252 164 29 40 chr12 3309627 3310072 -140476383 - L1MB3 LINE L1 -10 6173 5734 316 352 36 0 chr12 3310438 3310613 -140475842 - MIR3 SINE MIR -62 146 12 2396 162 52 0 chr12 3312058 3312465 -140473990 - MSTC LTR MaLR 0 428 1 234 208 16 70 chr12 3312587 3312679 -140473776 - MIR SINE MIR -95 113 32 460 185 56 9 chr12 3312893 3313001 -140473454 + MIR SINE MIR 52 164 -98 3903 146 27 52 chr12 3313027 3313295 -140473160 - L1MB4 LINE L1 -2 6178 5905 2238 83 0 23 chr12 3313295 3313596 -140472859 + AluSg SINE Alu 1 294 -16 3903 146 27 52 chr12 3313596 3313625 -140472830 - L1MB4 LINE L1 -275 5905 5877 1952 102 21 25 chr12 3313625 3313910 -140472545 + AluSx SINE Alu 12 295 -17 3903 146 27 52 chr12 3313910 3314439 -140472016 - L1MB4 LINE L1 -303 5877 5372 193 370 33 0 chr12 3314486 3314578 -140471877 - L2 LINE L2 -55 3217 3123 280 274 113 28 chr12 3316156 3316262 -140470193 + MIR3 SINE MIR 72 186 -22 516 293 116 0 chr12 3316325 3316489 -140469966 + MIR SINE MIR 26 208 -54 1810 162 21 60 chr12 3316872 3317091 -140469364 + L1MA7 LINE L1 5844 6039 -252 1595 158 3 100 chr12 3317091 3317290 -140469165 - AluJo SINE Alu -4 308 154 2329 87 0 10 chr12 3317290 3317602 -140468853 - AluY SINE Alu 0 311 3 1595 158 3 100 chr12 3317602 3317743 -140468712 - AluJo SINE Alu -158 154 1 1810 162 21 60 chr12 3317743 3317955 -140468500 + L1MA7 LINE L1 6039 6258 -33 1342 167 21 17 chr12 3317955 3318188 -140468267 + MER46A DNA MER2_type 1 234 -2 2151 99 36 0 chr12 3318217 3318519 -140467936 + AluSp SINE Alu 1 313 0 2090 113 10 7 chr12 3318549 3318851 -140467604 + AluSx SINE Alu 1 303 -9 480 193 0 0 chr12 3319296 3319384 -140467071 + MER69A DNA AcHobo 3 90 -87 594 237 0 7 chr12 3319385 3319520 -140466935 - L1MA10 LINE L1 -12 6322 6189 316 232 50 10 chr12 3319521 3319620 -140466835 + MER69A DNA AcHobo 75 177 0 941 266 147 38 chr12 3319783 3320523 -140465932 - L2 LINE L2 -2 3311 2481 232 367 22 43 chr12 3320516 3320655 -140465800 - L2 LINE L2 -51 3221 3086 * 2323 89 0 9 chr12 3320951 3321266 -140465189 + AluSx SINE Alu 1 312 0 184 276 47 79 chr12 3321266 3321393 -140465062 - MIR3 SINE MIR -77 131 9 2172 117 0 3 chr12 3323030 3323337 -140463118 - AluSq SINE Alu -7 306 1 2262 113 0 0 chr12 3323469 3323771 -140462684 - AluSx SINE Alu -10 302 1 1464 203 10 7 chr12 3324756 3325057 -140461398 - AluJo SINE Alu -10 302 1 21 0 0 0 chr12 3325064 3325085 -140461370 + AT_rich Low_complexity Low_complexity 1 21 0 2182 88 18 0 chr12 3325262 3325546 -140460909 + AluSx SINE Alu 1 289 -23 624 161 194 0 chr12 3325567 3325691 -140460764 + FAM SINE Alu 16 163 -22 246 347 13 0 chr12 3325693 3325768 -140460687 + MIR3 SINE MIR 126 201 -7 450 254 51 14 chr12 3326365 3326503 -140459952 + MIR3 SINE MIR 37 179 -29 829 146 36 0 chr12 3327461 3327598 -140458857 - AluJb SINE Alu -7 305 164 587 179 60 0 chr12 3327706 3327823 -140458632 + AluJo SINE Alu 5 128 -174 1723 189 0 0 chr12 3327837 3328133 -140458322 - AluJb SINE Alu -16 296 1 1005 190 18 0 chr12 3328264 3328427 -140458028 + AluJo SINE Alu 137 302 0 207 359 13 0 chr12 3328835 3328913 -140457542 - L2 LINE L2 -8 3264 3186 302 327 48 0 chr12 3328973 3329100 -140457355 - MIR SINE MIR -63 145 33 21 0 0 0 chr12 3329298 3329319 -140457136 + GC_rich Low_complexity Low_complexity 1 21 0 191 219 24 0 chr12 3329616 3329657 -140456798 - MIR SINE MIR -118 144 103 295 303 15 38 chr12 3331932 3332064 -140454391 - L2 LINE L2 -1 3312 3184 219 256 33 78 chr12 3332043 3332133 -140454322 + L2 LINE L2 3148 3233 -80 * 267 289 19 19 chr12 3332681 3332785 -140453670 + CT-rich Low_complexity Low_complexity 1 104 0 2206 114 0 3 chr12 3333110 3333416 -140453039 - AluSx SINE Alu -7 305 1 379 269 83 40 chr12 3333489 3333641 -140452814 - MIR SINE MIR -58 150 6 1865 113 17 26 chr12 3335311 3335613 -140450842 + AluSg SINE Alu 1 299 -11 785 184 45 133 chr12 3335626 3335963 -140450492 + MLT1A1 LTR MaLR 1 307 -58 2025 104 7 23 chr12 3336321 3336629 -140449826 + AluSg SINE Alu 1 303 -7 1507 243 95 95 chr12 3336644 3336902 -140449553 - HAL1 LINE L1 -79 2428 2172 2154 35 24 12 chr12 3336902 3337156 -140449299 - AluY SINE Alu -19 292 36 1507 243 95 95 chr12 3337156 3337207 -140449248 - HAL1 LINE L1 -335 2172 2123 1845 157 61 0 chr12 3337207 3337500 -140448955 + AluJb SINE Alu 1 311 -1 1507 243 95 95 chr12 3337500 3337757 -140448698 - HAL1 LINE L1 -384 2123 1868 2240 110 10 0 chr12 3337757 3338057 -140448398 - AluSx SINE Alu -9 303 1 1507 243 95 95 chr12 3338057 3338340 -140448115 - HAL1 LINE L1 -639 1868 1587 1973 151 0 29 chr12 3338340 3338652 -140447803 - AluSx SINE Alu -9 303 1 1507 243 95 95 chr12 3338652 3339116 -140447339 - HAL1 LINE L1 -920 1587 1105 611 279 109 20 chr12 3339117 3339364 -140447091 - MLT1J LTR MaLR 0 511 243 1777 98 114 4 chr12 3339827 3340081 -140446374 - AluSq SINE Alu -31 282 1 414 282 60 0 chr12 3340086 3340203 -140446252 - HAL1 LINE L1 -1558 949 826 734 164 15 15 chr12 3340266 3340400 -140446055 + AluJo SINE Alu 2 135 -177 1810 188 0 0 chr12 3340400 3340692 -140445763 + AluSx SINE Alu 1 292 -20 3762 150 71 50 chr12 3340692 3341456 -140444999 - L1MB8 LINE L1 -57 6121 5374 1986 155 7 0 chr12 3341456 3341746 -140444709 - AluSx SINE Alu -20 292 1 3762 150 71 50 chr12 3341746 3341880 -140444575 - L1MB8 LINE L1 -804 5374 5244 1861 141 19 48 chr12 3341880 3342049 -140444406 - AluJo SINE Alu -8 304 147 2619 53 0 3 chr12 3342049 3342353 -140444102 - AluY SINE Alu -8 303 1 1861 141 19 48 chr12 3342353 3342496 -140443959 - AluJo SINE Alu -165 147 1 3762 150 71 50 chr12 3342496 3342601 -140443854 - L1MB8 LINE L1 -934 5244 5093 654 276 45 76 chr12 3342605 3342986 -140443469 - HAL1 LINE L1 -1703 804 436 855 181 0 0 chr12 3343014 3343152 -140443303 - FLAM_C SINE Alu -5 138 1 251 285 62 28 chr12 3343395 3343539 -140442916 - HAL1 LINE L1 -2358 149 1 455 289 64 46 chr12 3344479 3344697 -140441758 - MIR SINE MIR -40 222 1 258 302 57 0 chr12 3345316 3345428 -140441027 + MIR SINE MIR 48 165 -43 819 139 0 0 chr12 3347468 3347583 -140438872 + AluJb SINE Alu 3 117 -195 2235 113 0 23 chr12 3347627 3347936 -140438519 + AluSx SINE Alu 1 302 -10 1998 182 7 0 chr12 3348355 3348663 -140437792 + AluJo SINE Alu 1 310 -2 210 235 44 29 chr12 3348673 3348741 -140437714 + MIR SINE MIR 36 104 -104 223 262 74 94 chr12 3351192 3351341 -140435114 - MIR3 SINE MIR -22 186 41 349 300 71 21 chr12 3351940 3352080 -140434375 - MER5B DNA MER1_type 0 178 32 682 222 86 50 chr12 3352080 3352301 -140434154 - L1MD2 LINE L1 0 6359 6131 2372 87 10 0 chr12 3352504 3352802 -140433653 - AluSx SINE Alu -11 301 1 244 203 119 76 chr12 3354303 3354421 -140432034 + MIR SINE MIR 24 146 -116 258 95 0 0 chr12 3354479 3354521 -140431934 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 572 192 295 5 chr12 3354730 3354923 -140431532 + MIR SINE MIR 14 262 0 314 184 138 0 chr12 3356068 3356155 -140430300 - MIR SINE MIR -70 192 94 238 275 25 50 chr12 3356173 3356253 -140430202 - L2 LINE L2 0 3313 3236 337 285 134 18 chr12 3356307 3356742 -140429713 - L2 LINE L2 -188 3125 2644 189 0 0 0 chr12 3357299 3357320 -140429135 + (AGGGGG)n Simple_repeat Simple_repeat 6 26 0 2510 90 0 0 chr12 3357449 3357759 -140428696 + AluSq SINE Alu 1 310 -3 207 307 67 0 chr12 3357792 3357867 -140428588 + MIR SINE MIR 70 149 -113 2031 126 48 3 chr12 3358258 3358552 -140427903 + AluJb SINE Alu 1 307 -5 796 188 0 0 chr12 3359649 3359782 -140426673 - FLAM_A SINE Alu 0 133 1 1972 125 11 57 chr12 3359813 3360034 -140426421 + MER1B DNA MER1_type 1 202 -2508 2447 59 7 20 chr12 3360034 3360340 -140426115 + AluY SINE Alu 1 302 -9 1972 125 11 57 chr12 3360340 3360471 -140425984 + MER1B DNA MER1_type 202 337 0 315 309 36 52 chr12 3361046 3361240 -140425215 - L2 LINE L2 -19 3294 3104 729 179 0 8 chr12 3361281 3361415 -140425040 - FLAM_A SINE Alu -9 133 1 1900 163 3 13 chr12 3361424 3361725 -140424730 - AluJb SINE Alu -13 299 2 1205 186 18 63 chr12 3361725 3361827 -140424628 + MER58B DNA MER1_type 78 183 -2237 1990 137 27 0 chr12 3361827 3362120 -140424335 - AluJb SINE Alu -11 301 1 1205 186 18 63 chr12 3362120 3362292 -140424163 + MER58B DNA MER1_type 183 341 0 1501 302 122 7 chr12 3362457 3363198 -140423257 - HAL1 LINE L1 -1480 1027 202 406 135 11 11 chr12 3363200 3363254 -140423201 + CT-rich Low_complexity Low_complexity 2 58 -32 2249 115 0 0 chr12 3363254 3363542 -140422913 - AluSx SINE Alu -24 288 1 406 135 11 11 chr12 3363542 3363576 -140422879 + CT-rich Low_complexity Low_complexity 57 90 0 1645 169 0 4 chr12 3363612 3363867 -140422588 - AluJb SINE Alu -54 258 5 390 88 50 25 chr12 3363881 3363961 -140422494 + CT-rich Low_complexity Low_complexity 1 82 0 377 70 18 0 chr12 3363977 3364034 -140422421 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 841 126 11 27 chr12 3364035 3364218 -140422237 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 257 203 43 0 chr12 3364226 3364295 -140422160 + CT-rich Low_complexity Low_complexity 6 77 0 272 170 0 21 chr12 3364296 3364343 -140422112 - AluS SINE Alu -22 278 233 256 279 113 81 chr12 3364346 3364432 -140422023 - MLT1J LTR MaLR -52 459 377 1414 199 57 4 chr12 3364432 3364713 -140421742 - AluSx SINE Alu -16 296 1 256 279 113 81 chr12 3364713 3364848 -140421607 - MLT1J LTR MaLR -134 377 231 2401 68 10 32 chr12 3365017 3365326 -140421129 + AluSp SINE Alu 1 302 -11 1280 168 44 103 chr12 3365339 3365727 -140420728 + MLT1A1 LTR MaLR 1 365 0 612 242 199 5 chr12 3365924 3366110 -140420345 - MLT1J LTR MaLR -257 254 33 2050 145 0 3 chr12 3366188 3366485 -140419970 - AluJo SINE Alu -16 296 1 1737 182 10 22 chr12 3366485 3366797 -140419658 - AluJo SINE Alu -3 309 1 2623 48 0 13 chr12 3366843 3367156 -140419299 - AluY SINE Alu -2 309 1 264 315 87 3 chr12 3367163 3367307 -140419148 - MIR SINE MIR -50 212 58 381 151 0 0 chr12 3367493 3367579 -140418876 + (CCTG)n Simple_repeat Simple_repeat 3 88 0 1311 170 0 38 chr12 3367579 3367814 -140418641 - AluJb SINE Alu -3 309 84 216 274 43 4 chr12 3368299 3368391 -140418064 - MIR SINE MIR -104 104 12 650 245 21 7 chr12 3368779 3368922 -140417533 - L2 LINE L2 -2 3311 3167 833 163 0 16 chr12 3369127 3369256 -140417199 + FLAM_C SINE Alu 1 127 -16 207 322 17 26 chr12 3369370 3369485 -140416970 + MER5A DNA MER1_type 4 117 -72 829 236 16 16 chr12 3369959 3370150 -140416305 - AluJo SINE Alu 0 312 122 189 0 0 0 chr12 3371077 3371098 -140415357 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2693 46 0 0 chr12 3371187 3371494 -140414961 + AluY SINE Alu 1 307 -4 201 74 0 0 chr12 3371723 3371750 -140414705 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1552 158 0 0 chr12 3371761 3371989 -140414466 - AluJo SINE Alu -84 228 1 2663 42 0 7 chr12 3371998 3372308 -140414147 - AluY SINE Alu -3 308 1 332 201 163 105 chr12 3372331 3372625 -140413830 - L1MC5 LINE L1 -945 6863 6553 2342 95 7 7 chr12 3373190 3373494 -140412961 - AluSx SINE Alu -8 304 1 1821 209 150 4 chr12 3373746 3374254 -140412201 + MLT1E LTR MaLR 8 589 -4 807 336 110 44 chr12 3374270 3375200 -140411255 + L2 LINE L2 379 1389 -1925 1721 213 0 0 chr12 3375200 3375505 -140410950 - AluJb SINE Alu -7 305 1 807 336 110 44 chr12 3375505 3375627 -140410828 + L2 LINE L2 1389 1501 -1813 2527 165 53 48 chr12 3375648 3376235 -140410220 + LTR8A LTR ERV1 37 626 -101 894 170 19 94 chr12 3376229 3376361 -140410094 + LTR8 LTR ERV1 496 608 -83 * 2292 84 0 0 chr12 3376361 3376635 -140409820 + AluSx SINE Alu 25 298 -14 894 170 19 94 chr12 3376635 3376714 -140409741 + LTR8 LTR ERV1 608 691 0 326 226 189 3 chr12 3376826 3376987 -140409468 - L1ME LINE L1 -4970 1089 826 643 173 0 0 chr12 3377022 3377132 -140409323 - FLAM_A SINE Alu -10 132 23 1773 239 20 93 chr12 3377148 3377624 -140408831 - L1ME LINE L1 -5168 902 493 2255 99 3 0 chr12 3377624 3377928 -140408527 - AluSp SINE Alu 0 305 1 1773 239 20 93 chr12 3377928 3378162 -140408293 - L1ME LINE L1 -5577 493 243 3024 128 14 10 chr12 3378162 3378655 -140407800 + MER4D LTR ERV1 1 495 -408 1350 189 0 0 chr12 3378668 3378896 -140407559 + AluJb SINE Alu 85 312 0 2134 145 0 10 chr12 3378897 3379201 -140407254 + AluJb SINE Alu 1 301 -11 881 129 30 89 chr12 3379201 3379403 -140407052 + MER4E LTR ERV1 429 618 -161 2342 103 0 3 chr12 3379406 3379707 -140406748 - AluY SINE Alu -11 300 1 2261 230 116 14 chr12 3379722 3380388 -140406067 + MER50 LTR ERV1 1 734 0 1067 153 0 6 chr12 3380388 3380549 -140405906 + MER4D LTR ERV1 744 903 0 537 292 12 56 chr12 3380549 3380803 -140405652 - L1ME LINE L1 -5824 246 1 469 304 70 11 chr12 3380827 3381097 -140405358 + L2 LINE L2 1685 1970 -1344 1694 186 0 49 chr12 3381187 3381494 -140404961 - AluJo SINE Alu -20 292 1 2734 45 0 0 chr12 3381560 3381868 -140404587 - AluY SINE Alu -3 308 1 237 83 0 0 chr12 3382658 3382694 -140403761 + (CA)n Simple_repeat Simple_repeat 1 36 0 1071 195 0 0 chr12 3382852 3383037 -140403418 + MER58A DNA MER1_type 39 223 -1 363 181 71 71 chr12 3383085 3383212 -140403243 + MER53 DNA DNA 1 127 -62 23 78 0 0 chr12 3383609 3383660 -140402795 + AT_rich Low_complexity Low_complexity 1 51 0 847 129 9 0 chr12 3383670 3383786 -140402669 - FLAM_C SINE Alu -24 119 3 2403 93 3 13 chr12 3384950 3385263 -140401192 - AluSx SINE Alu 0 312 3 2351 80 7 3 chr12 3385268 3385567 -140400888 - AluSx SINE Alu -12 300 1 2189 91 51 0 chr12 3385629 3385905 -140400550 - AluSx SINE Alu -22 290 1 1013 219 32 24 chr12 3386038 3386284 -140400171 + MIR SINE MIR 13 260 -2 440 198 86 9 chr12 3386596 3386712 -140399743 + MER94 DNA DNA 10 134 0 180 257 43 29 chr12 3386912 3386982 -140399473 - L3b LINE CR1 -353 1230 1160 1871 124 42 35 chr12 3387149 3387432 -140399023 - AluJb SINE Alu -27 285 1 1477 131 3 134 chr12 3387453 3387774 -140398681 + AluJo SINE Alu 33 311 -1 299 267 184 73 chr12 3387785 3387873 -140398582 - MIR SINE MIR -6 256 179 2360 77 7 0 chr12 3387873 3388173 -140398282 - AluSx SINE Alu 0 312 5 299 267 184 73 chr12 3388173 3388290 -140398165 - MIR SINE MIR -83 179 28 1361 169 61 32 chr12 3388784 3389063 -140397392 - AluJo SINE Alu -25 287 1 1715 113 21 17 chr12 3389157 3389448 -140397007 + AluJb SINE Alu 21 312 0 362 92 0 15 chr12 3390062 3390127 -140396328 + (CCCCG)n Simple_repeat Simple_repeat 3 66 0 180 0 0 0 chr12 3390169 3390189 -140396266 + (CGG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr12 3390241 3390263 -140396192 + GC_rich Low_complexity Low_complexity 1 22 0 197 189 0 0 chr12 3391126 3391163 -140395292 + L2 LINE L2 3019 3055 -217 327 311 14 74 chr12 3391648 3391755 -140394700 - MIR3 SINE MIR 0 262 150 2166 101 3 0 chr12 3391755 3392051 -140394404 - AluSx SINE Alu -7 305 9 327 311 14 74 chr12 3392051 3392220 -140394235 - MIR3 SINE MIR -112 150 3 2216 125 0 0 chr12 3392229 3392542 -140393913 - AluSq SINE Alu 0 313 1 1758 141 9 58 chr12 3392544 3392870 -140393585 - AluJo SINE Alu -2 310 1 234 306 117 18 chr12 3392900 3393011 -140393444 + MIR3 SINE MIR 68 189 -19 755 152 78 86 chr12 3393079 3393110 -140393345 - L1MB2 LINE L1 -7 6164 6134 2110 101 3 10 chr12 3393110 3393416 -140393039 - AluSg SINE Alu -5 305 2 755 152 78 86 chr12 3393416 3393618 -140392837 - L1MB2 LINE L1 -37 6134 5929 478 339 30 0 chr12 3393797 3393965 -140392490 + MIR SINE MIR 90 262 0 1307 177 78 35 chr12 3394465 3394590 -140391865 + AluJo SINE Alu 1 119 -193 351 0 0 0 chr12 3394590 3394629 -140391826 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr12 3394628 3394653 -140391802 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1307 177 78 35 chr12 3394629 3394809 -140391646 + AluJo SINE Alu 119 294 -18 227 299 58 11 chr12 3394811 3394898 -140391557 - L2 LINE L2 -49 3264 3174 231 253 80 0 chr12 3395235 3395310 -140391145 - L2 LINE L2 0 3313 3233 205 260 0 0 chr12 3395609 3395659 -140390796 + L2 LINE L2 3178 3227 -86 469 309 94 6 chr12 3396138 3396319 -140390136 - MER117 DNA MER1_type 0 197 1 199 330 11 32 chr12 3397497 3397591 -140388864 - MIR SINE MIR -66 196 105 600 190 157 0 chr12 3397902 3398023 -140388432 + AluSg SINE Alu 3 142 -168 334 285 29 44 chr12 3398389 3398526 -140387929 + MIR3 SINE MIR 52 186 -22 230 288 30 15 chr12 3399518 3399584 -140386871 - MER91C DNA MER1_type -1 189 123 1570 157 49 28 chr12 3400036 3400322 -140386133 + AluJo SINE Alu 1 292 -20 2027 120 3 3 chr12 3400326 3400617 -140385838 + AluSg SINE Alu 3 293 -17 239 224 53 13 chr12 3400620 3400696 -140385759 + MER91C DNA MER1_type 62 140 0 2477 62 0 0 chr12 3401749 3402053 -140384402 + AluY SINE Alu 1 304 -7 916 140 17 51 chr12 3402419 3402597 -140383858 + AluSg/x SINE Alu 129 300 -10 307 279 43 91 chr12 3402606 3402814 -140383641 + HAL1 LINE L1 1557 1754 -753 833 127 0 0 chr12 3402881 3403007 -140383448 + FLAM_C SINE Alu 1 126 -17 32 57 0 0 chr12 3403172 3403225 -140383230 + AT_rich Low_complexity Low_complexity 1 53 0 1248 192 54 23 chr12 3456888 3457148 -140329307 + AluJo SINE Alu 34 301 -11 224 307 29 21 chr12 3457912 3458052 -140328403 + (CCCCAG)n Simple_repeat Simple_repeat 2 142 0 284 286 20 10 chr12 3459635 3459733 -140326722 + MIR SINE MIR 148 246 -16 310 197 0 15 chr12 3460148 3460214 -140326241 - L3 LINE CR1 -116 1461 1397 356 299 81 40 chr12 3461282 3461456 -140324999 + MIR SINE MIR 80 260 -2 198 337 51 10 chr12 3462363 3462461 -140323994 + MIR SINE MIR 128 229 -33 190 330 65 60 chr12 3462473 3462658 -140323797 - L2 LINE L2 -15 3257 3072 1218 308 63 9 chr12 3462691 3463350 -140323105 - L2 LINE L2 -2 3311 2614 289 309 41 0 chr12 3463489 3463586 -140322869 - L2 LINE L2 -710 2604 2504 286 238 107 0 chr12 3465150 3465234 -140321221 + MIR3 SINE MIR 84 176 -32 1193 178 53 0 chr12 3465284 3465492 -140320963 + MER20 DNA MER1_type 1 219 0 228 268 14 14 chr12 3466307 3466378 -140320077 + L2 LINE L2 3203 3273 -40 323 95 5 0 chr12 3466968 3467028 -140319427 + Alu SINE Alu 1 43 -265 325 282 17 86 chr12 3467934 3468108 -140318347 - L3 LINE CR1 -125 1452 1291 471 287 98 6 chr12 3468118 3468282 -140318173 - L3 LINE CR1 -486 1091 913 232 46 32 208 chr12 3470083 3470299 -140316156 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 211 329 106 29 chr12 3472105 3472275 -140314180 + MIR SINE MIR 80 262 0 409 316 75 0 chr12 3473127 3473260 -140313195 - MIR SINE MIR -20 242 100 330 298 124 8 chr12 3473583 3473704 -140312751 - MIR SINE MIR -79 183 49 470 322 103 14 chr12 3474608 3474822 -140311633 + MIR SINE MIR 29 261 -1 431 321 45 0 chr12 3476211 3476345 -140310110 + MIR3 SINE MIR 69 208 0 291 254 156 18 chr12 3476348 3476486 -140309969 - MIR SINE MIR -65 143 35 188 227 114 0 chr12 3476595 3476639 -140309816 - MIR SINE MIR -76 132 84 637 239 49 117 chr12 3478065 3478329 -140308126 + MIR SINE MIR 15 260 -2 190 309 160 11 chr12 3478903 3478997 -140307458 + L2 LINE L2 3201 3308 -5 316 311 57 0 chr12 3479414 3479520 -140306935 + L2 LINE L2 2268 2379 -935 431 302 242 14 chr12 3479544 3480119 -140306336 + L2 LINE L2 2498 3311 -2 291 300 44 0 chr12 3480357 3480447 -140306008 + MIR SINE MIR 77 170 -92 352 381 22 0 chr12 3484817 3484956 -140301499 + MIR SINE MIR 121 262 0 195 376 30 0 chr12 3485382 3485483 -140300972 - MIR SINE MIR -9 253 150 193 268 115 70 chr12 3485564 3485721 -140300734 - MER5A DNA MER1_type -23 166 3 538 234 86 25 chr12 3486003 3486200 -140300255 - MIR SINE MIR -20 242 34 329 271 30 8 chr12 3487929 3488062 -140298393 + L1ME4a LINE L1 5981 6116 -5 250 316 13 0 chr12 3488507 3488586 -140297869 + GA-rich Low_complexity Low_complexity 3 82 0 359 330 54 0 chr12 3489699 3489811 -140296644 + MIR SINE MIR 30 147 -61 223 323 50 10 chr12 3490858 3490957 -140295498 + MIR SINE MIR 104 206 -56 183 351 108 18 chr12 3492102 3492213 -140294242 - L3b LINE CR1 -2 1581 1461 2180 149 96 15 chr12 3493181 3493577 -140292878 + MSTA LTR MaLR 1 428 0 404 318 80 17 chr12 3496091 3496267 -140290188 + MIR SINE MIR 70 256 -6 201 306 32 0 chr12 3496759 3496821 -140289634 - MIR SINE MIR -87 121 58 336 341 61 12 chr12 3496975 3497139 -140289316 + MIR3 SINE MIR 1 172 -36 793 336 48 12 chr12 3498271 3498685 -140287770 - L1ME LINE L1 -338 5783 5355 250 306 24 12 chr12 3498831 3498916 -140287539 + MIR SINE MIR 1 86 -176 365 291 88 20 chr12 3498934 3499082 -140287373 + MIR SINE MIR 3 160 -102 442 305 64 11 chr12 3499311 3499498 -140286957 + L1MC5 LINE L1 7729 7925 -36 211 288 62 12 chr12 3499805 3499885 -140286570 + MIR SINE MIR 24 107 -101 338 292 84 8 chr12 3501252 3501404 -140285051 + MIR3 SINE MIR 4 146 -62 228 217 22 0 chr12 3501477 3501523 -140284932 + G-rich Low_complexity Low_complexity 1 47 0 220 336 89 59 chr12 3502405 3502676 -140283779 + L2 LINE L2 2973 3251 -21 725 286 95 9 chr12 3503020 3503251 -140283204 + MIR SINE MIR 12 262 0 519 346 13 34 chr12 3503188 3503425 -140283030 - MIR SINE MIR -16 246 15 * 489 303 82 26 chr12 3504014 3504209 -140282246 - MIR SINE MIR -56 206 1 492 18 0 0 chr12 3504266 3504323 -140282132 + (TA)n Simple_repeat Simple_repeat 1 57 0 2345 51 0 69 chr12 3504328 3504662 -140281793 - AluY SINE Alu 0 311 1 194 265 0 82 chr12 3505064 3505162 -140281293 - L2 LINE L2 -19 3294 3205 287 285 46 46 chr12 3505748 3505878 -140280577 + L1ME3A LINE L1 5610 5739 -423 377 294 12 12 chr12 3505882 3506045 -140280410 + L1ME3A LINE L1 5788 5950 -220 234 339 57 24 chr12 3506518 3506752 -140279703 + L3 LINE CR1 1190 1471 -106 374 314 52 7 chr12 3506837 3506990 -140279465 + MER5B DNA MER1_type 17 176 -2 274 271 112 9 chr12 3508222 3508329 -140278126 - MIR SINE MIR -71 137 20 23 0 0 0 chr12 3508417 3508440 -140278015 + AT_rich Low_complexity Low_complexity 1 23 0 1150 204 109 48 chr12 3510374 3510814 -140275641 + MLT1C LTR MaLR 1 467 0 495 279 127 33 chr12 3511003 3511157 -140275298 + MIR SINE MIR 15 190 -72 1729 164 0 50 chr12 3511157 3511474 -140274981 - AluJo SINE Alu -11 301 1 495 279 127 33 chr12 3511474 3511548 -140274907 + MIR SINE MIR 190 256 -6 519 202 0 0 chr12 3512643 3512727 -140273728 + FRAM/FAM SINE Alu 1 83 -93 332 281 0 0 chr12 3512731 3512795 -140273660 + L1MC4 LINE L1 6638 6701 -1341 774 32 0 0 chr12 3512795 3512888 -140273567 + (CA)n Simple_repeat Simple_repeat 2 94 0 600 123 0 0 chr12 3512899 3512980 -140273475 - FLAM_A SINE Alu -18 124 44 347 342 37 43 chr12 3514981 3515168 -140271287 + MIR3 SINE MIR 16 201 -7 199 354 62 26 chr12 3515316 3515429 -140271026 + L3b LINE CR1 1269 1385 -198 573 263 13 13 chr12 3515530 3515686 -140270769 + MER5B DNA MER1_type 10 165 -13 214 309 60 48 chr12 3515813 3515897 -140270558 - MIR SINE MIR -70 192 108 267 323 30 20 chr12 3517313 3517412 -140269043 + L2 LINE L2 3169 3268 -4 1748 163 51 0 chr12 3517599 3517875 -140268580 + AluJo SINE Alu 1 290 -22 2175 124 0 3 chr12 3517882 3518188 -140268267 + AluSx SINE Alu 1 305 -7 186 86 0 86 chr12 3519219 3519254 -140267201 + MIR SINE MIR 11 42 -220 2135 103 34 0 chr12 3519377 3519668 -140266787 - AluSq SINE Alu -12 301 1 1412 62 42 10 chr12 3519677 3519869 -140266586 - L1PA7 LINE L1 0 6154 5957 323 414 53 10 chr12 3521523 3521731 -140264724 - MIR SINE MIR -23 239 23 866 236 10 10 chr12 3525349 3525548 -140260907 - MIR3 SINE MIR -5 203 5 801 153 30 0 chr12 3526968 3527099 -140259356 + AluJo SINE Alu 1 135 -177 465 226 140 12 chr12 3527102 3527266 -140259189 + L1ME3A LINE L1 4407 4591 -1555 2113 134 0 0 chr12 3527271 3527578 -140258877 + AluSg SINE Alu 1 307 -3 517 281 118 52 chr12 3527946 3528495 -140257960 + L1ME3A LINE L1 4549 5060 -1273 1967 152 0 7 chr12 3528495 3528804 -140257651 + AluJo SINE Alu 1 307 -5 517 281 118 52 chr12 3528804 3529340 -140257115 + L1ME3A LINE L1 5060 5659 -674 1304 65 12 0 chr12 3529384 3529554 -140256901 - AluY SINE Alu -7 304 133 2667 36 0 0 chr12 3529554 3529863 -140256592 - AluY SINE Alu -2 309 1 220 222 37 0 chr12 3530008 3530062 -140256393 + MER5C DNA MER1_type 267 322 -2 544 339 60 3 chr12 3530062 3530277 -140256178 + L1ME3A LINE L1 5647 5885 -285 2331 97 0 0 chr12 3530277 3530585 -140255870 - AluSg SINE Alu -1 309 2 544 339 60 3 chr12 3530585 3530667 -140255788 + L1ME3A LINE L1 5885 5961 -209 183 42 0 0 chr12 3532937 3532961 -140253494 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 221 208 0 21 chr12 3533260 3533308 -140253147 + L2 LINE L2 3267 3313 0 234 176 14 95 chr12 3536229 3536303 -140250152 - L2 LINE L2 0 3313 3246 370 283 42 0 chr12 3536936 3537056 -140249399 - MIR3 SINE MIR -42 166 42 21 36 0 0 chr12 3538694 3538722 -140247733 + GC_rich Low_complexity Low_complexity 1 28 0 272 274 88 35 chr12 3540226 3540339 -140246116 + L2 LINE L2 3154 3272 0 248 260 62 21 chr12 3540413 3540509 -140245946 - L2 LINE L2 -35 3237 3138 447 175 0 52 chr12 3540644 3540938 -140245517 + (CTGTG)n Simple_repeat Simple_repeat 1 278 0 270 130 0 172 chr12 3540947 3541162 -140245293 + (TGG)n Simple_repeat Simple_repeat 3 180 0 * 338 176 0 78 chr12 3541069 3541262 -140245193 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 * 451 160 0 103 chr12 3541199 3541599 -140244856 + (TGG)n Simple_repeat Simple_repeat 1 358 0 342 155 0 82 chr12 3541647 3541841 -140244614 + (CTGTG)n Simple_repeat Simple_repeat 3 180 0 460 288 25 16 chr12 3542312 3542497 -140243958 + MIR SINE MIR 30 218 -44 397 211 0 11 chr12 3542968 3543058 -140243397 - MIR SINE MIR -54 208 120 1934 162 3 0 chr12 3544854 3545157 -140241298 + AluJb SINE Alu 1 304 -8 216 352 39 31 chr12 3545284 3545412 -140241043 + L2 LINE L2 3128 3256 -16 206 265 162 0 chr12 3545598 3545666 -140240789 + L2 LINE L2 3193 3271 -42 229 265 0 0 chr12 3545667 3545716 -140240739 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 279 296 68 74 chr12 3546361 3546523 -140239932 + MIR SINE MIR 6 166 -96 543 307 131 65 chr12 3546742 3547873 -140238582 + L2 LINE L2 2127 3310 -3 315 269 130 9 chr12 3547986 3548094 -140238361 + MIR3 SINE MIR 72 192 -16 385 331 163 16 chr12 3548384 3548704 -140237751 + L2 LINE L2 2906 3272 0 234 0 0 0 chr12 3551284 3551310 -140235145 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 196 118 0 0 chr12 3551316 3551350 -140235105 + MIR SINE MIR 116 149 -113 326 260 120 0 chr12 3551933 3552033 -140234422 - MIR SINE MIR -63 145 34 655 239 133 16 chr12 3552443 3552631 -140233824 + MER63A DNA MER1_type 1 210 0 714 257 236 3 chr12 3552866 3552963 -140233492 + L2 LINE L2 2708 2781 -532 282 29 0 0 chr12 3552963 3552998 -140233457 + (CA)n Simple_repeat Simple_repeat 2 36 0 714 257 236 3 chr12 3552998 3553248 -140233207 + L2 LINE L2 2781 3124 -189 236 284 99 0 chr12 3553236 3553317 -140233138 + L2 LINE L2 3225 3313 0 * 237 288 30 0 chr12 3554050 3554116 -140232339 + MER4A LTR ERV1 26 93 -571 267 231 15 15 chr12 3554340 3554405 -140232050 + L2 LINE L2 3206 3270 -2 242 160 20 0 chr12 3555066 3555116 -140231339 + CT-rich Low_complexity Low_complexity 1 51 0 1809 156 16 25 chr12 3555116 3555430 -140231025 - AluJb SINE Alu -1 311 1 209 265 169 36 chr12 3555694 3555777 -140230678 - MIR SINE MIR -95 113 20 350 345 63 11 chr12 3555805 3555979 -140230476 + MER5A DNA MER1_type 7 189 0 234 295 80 36 chr12 3556895 3557007 -140229448 + L2 LINE L2 3197 3313 0 331 306 139 6 chr12 3557769 3557942 -140228513 + MIR SINE MIR 2 197 -65 278 271 131 14 chr12 3558085 3558244 -140228211 + MIR SINE MIR 20 177 -72 381 318 94 5 chr12 3558351 3558574 -140227881 - L3 LINE CR1 -254 1323 1081 182 240 20 0 chr12 3558593 3558643 -140227812 + L2 LINE L2 3202 3252 -20 573 258 96 40 chr12 3558971 3559046 -140227409 - MER112 DNA MER1_type 0 260 191 1313 196 154 0 chr12 3559046 3559306 -140227149 - AluJo SINE Alu -2 300 1 573 258 96 40 chr12 3559306 3559428 -140227027 - MER112 DNA MER1_type -69 191 52 258 314 204 0 chr12 3560032 3560204 -140226251 + L3b LINE CR1 1223 1429 -154 212 280 0 0 chr12 3560877 3560927 -140225528 - L2 LINE L2 -12 3301 3252 2184 104 0 10 chr12 3560950 3561259 -140225196 + AluSq SINE Alu 1 306 -7 1996 132 0 0 chr12 3561808 3562097 -140224358 + AluSx SINE Alu 1 289 -23 2190 90 0 0 chr12 3562104 3562392 -140224063 + AluY SINE Alu 1 288 -23 23 0 0 0 chr12 3562423 3562446 -140224009 + AT_rich Low_complexity Low_complexity 1 23 0 203 216 20 0 chr12 3563363 3563414 -140223041 + L2 LINE L2 3190 3241 -31 2558 39 0 0 chr12 3564659 3564967 -140221488 + AluY SINE Alu 1 308 -3 269 272 22 88 chr12 3565095 3565174 -140221281 - MIR3 SINE MIR -4 204 136 1854 144 28 0 chr12 3565174 3565465 -140220990 + AluJo SINE Alu 1 299 -13 269 272 22 88 chr12 3565465 3565521 -140220934 - MIR3 SINE MIR -72 136 78 208 227 23 0 chr12 3565684 3565728 -140220727 + GA-rich Low_complexity Low_complexity 1 45 0 1401 169 64 14 chr12 3565747 3566042 -140220413 + AluJo SINE Alu 1 310 -2 204 359 66 0 chr12 3566098 3566265 -140220190 - L2 LINE L2 -222 3050 2873 407 262 100 57 chr12 3568181 3568410 -140218045 - L2 LINE L2 -34 3279 3041 271 333 16 32 chr12 3568420 3568543 -140217912 - L2 LINE L2 -655 2659 2539 189 313 90 0 chr12 3568564 3568631 -140217824 - L2 LINE L2 -939 2375 2303 569 231 137 40 chr12 3569341 3569582 -140216873 - MIR SINE MIR -5 257 3 308 305 58 58 chr12 3569976 3570150 -140216305 - MIR SINE MIR -41 221 48 247 145 177 16 chr12 3572253 3572315 -140214140 + L1P2 LINE L1 5392 5463 -692 * 1102 244 74 36 chr12 3572290 3572444 -140214011 + L1ME3A LINE L1 5791 5938 -232 2376 90 0 0 chr12 3572444 3572756 -140213699 + AluSx SINE Alu 1 312 0 1102 244 74 36 chr12 3572756 3572966 -140213489 + L1ME3A LINE L1 5938 6169 -1 251 241 63 0 chr12 3573074 3573153 -140213302 + MIR3 SINE MIR 125 208 0 222 171 0 0 chr12 3573919 3573960 -140212495 + MIR SINE MIR 109 149 -113 341 286 184 24 chr12 3574543 3574711 -140211744 - MIR3 SINE MIR 0 208 14 358 338 14 0 chr12 3574728 3574876 -140211579 + MER117 DNA MER1_type 21 170 -27 206 333 0 0 chr12 3575133 3575187 -140211268 - L2 LINE L2 0 3272 3219 248 244 179 0 chr12 3576366 3576444 -140210011 - L2 LINE L2 0 3313 3222 2093 132 80 66 chr12 3577183 3577563 -140208892 - MSTB1 LTR MaLR 0 432 59 817 204 7 7 chr12 3577563 3577715 -140208740 + FRAM SINE Alu 3 154 -12 426 39 0 0 chr12 3577716 3577768 -140208687 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2093 132 80 66 chr12 3577768 3577811 -140208644 - MSTB1 LTR MaLR -372 60 1 3905 152 47 46 chr12 3578051 3578308 -140208147 + L1MB8 LINE L1 4904 5159 -1019 2142 95 3 7 chr12 3578308 3578603 -140207852 - AluSp SINE Alu -19 294 1 3905 152 47 46 chr12 3578603 3579581 -140206874 + L1MB8 LINE L1 5159 6128 -50 1966 135 47 75 chr12 3579592 3579828 -140206627 - MLT1B LTR MaLR 0 390 168 710 203 0 0 chr12 3579828 3579956 -140206499 - FLAM_C SINE Alu -5 128 1 1966 135 47 75 chr12 3579956 3580120 -140206335 - MLT1B LTR MaLR -222 168 1 518 246 42 36 chr12 3580186 3580353 -140206102 - MIR3 SINE MIR -36 172 5 2285 89 0 0 chr12 3580797 3581088 -140205367 - AluSg SINE Alu -8 302 12 222 315 111 9 chr12 3581799 3581907 -140204548 + MIR SINE MIR 20 138 -70 398 283 215 16 chr12 3581934 3582125 -140204330 - MIR SINE MIR -16 246 18 2357 60 0 7 chr12 3582140 3582438 -140204017 + AluY SINE Alu 1 296 -15 2144 108 0 19 chr12 3582733 3583047 -140203408 + AluSx SINE Alu 1 308 -4 875 196 31 18 chr12 3583925 3584088 -140202367 - FRAM SINE Alu -11 165 1 644 280 18 0 chr12 3584350 3584518 -140201937 + Charlie8 DNA MER1_type 1 171 -2246 183 156 0 0 chr12 3584936 3584968 -140201487 + GA-rich Low_complexity Low_complexity 1 32 0 291 28 0 0 chr12 3585494 3585530 -140200925 + (CA)n Simple_repeat Simple_repeat 1 36 0 216 67 0 0 chr12 3585664 3585694 -140200761 + (CA)n Simple_repeat Simple_repeat 1 30 0 210 203 0 34 chr12 3585789 3585848 -140200607 + (CAGA)n Simple_repeat Simple_repeat 2 58 0 189 0 0 0 chr12 3586452 3586473 -140199982 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2190 108 0 7 chr12 3586653 3586960 -140199495 + AluSx SINE Alu 1 305 -7 1196 85 0 0 chr12 3587601 3587754 -140198701 - AluSg/x SINE Alu -13 297 145 277 279 0 0 chr12 3588320 3588388 -140198067 + (CA)n Simple_repeat Simple_repeat 1 68 0 257 250 0 0 chr12 3589199 3589255 -140197200 + MIR SINE MIR 73 128 -80 395 348 66 22 chr12 3589346 3589573 -140196882 + L2 LINE L2 3036 3272 0 495 295 8 14 chr12 3589665 3589833 -140196622 - MER5A DNA MER1_type -10 179 1 313 235 29 0 chr12 3591318 3591386 -140195069 + MIR3 SINE MIR 115 184 -24 759 238 11 32 chr12 3591772 3591961 -140194494 - MER3 DNA MER1_type -2 207 23 443 322 78 6 chr12 3592500 3592680 -140193775 - MIR SINE MIR -56 206 14 337 257 22 81 chr12 3592964 3593100 -140193355 + L2 LINE L2 3155 3282 -31 487 261 29 7 chr12 3593357 3593495 -140192960 - MIR3 SINE MIR -3 205 65 694 268 91 25 chr12 3594872 3595115 -140191340 - MLT1C LTR MaLR -9 458 200 2004 116 14 0 chr12 3595140 3595424 -140191031 + AluSx SINE Alu 1 288 -24 248 0 31 0 chr12 3595427 3595459 -140190996 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 3241 196 33 130 chr12 3595460 3596776 -140189679 + L1MC4a LINE L1 6545 7721 -87 405 258 172 8 chr12 3597402 3597530 -140188925 + MIR SINE MIR 81 229 -33 200 285 203 32 chr12 3599294 3599417 -140187038 - MER5C DNA MER1_type -177 147 4 1695 145 81 7 chr12 3599693 3599976 -140186479 + AluJb SINE Alu 1 304 -8 1235 144 24 124 chr12 3600781 3601079 -140185376 + AluJb SINE Alu 35 302 -10 217 250 36 12 chr12 3601482 3601566 -140184889 - MIR SINE MIR -84 124 39 320 282 29 10 chr12 3603036 3603139 -140183316 + MIR SINE MIR 103 207 -55 218 179 0 54 chr12 3603226 3603282 -140183173 + MIR SINE MIR 28 80 -182 1748 156 0 11 chr12 3604155 3604438 -140182017 + AluJo SINE Alu 1 280 -32 434 276 115 29 chr12 3605025 3605199 -140181256 + MIR3 SINE MIR 20 208 0 235 311 141 67 chr12 3605536 3605671 -140180784 - MIR SINE MIR -80 182 38 22 0 0 0 chr12 3606143 3606165 -140180290 + AT_rich Low_complexity Low_complexity 1 22 0 244 383 57 19 chr12 3606796 3607005 -140179450 + L3 LINE CR1 986 1202 -375 3568 178 30 14 chr12 3607009 3607781 -140178674 + L1MB5 LINE L1 5391 6174 0 186 394 0 39 chr12 3607798 3607902 -140178553 + L3 LINE CR1 1222 1321 -256 484 313 60 20 chr12 3607936 3608137 -140178318 - MIR SINE MIR -1 261 53 345 294 161 6 chr12 3608224 3608404 -140178051 + MIR SINE MIR 55 262 0 729 266 22 5 chr12 3608758 3608942 -140177513 - MIR SINE MIR -3 259 73 760 329 29 0 chr12 3609822 3610068 -140176387 - MIR SINE MIR -6 256 4 2470 159 49 2 chr12 3610334 3610780 -140175675 + L1MB3 LINE L1 5715 6181 -2 778 142 18 0 chr12 3610983 3611096 -140175359 - FLAM_A SINE Alu -18 115 1 1074 191 15 0 chr12 3611410 3611609 -140174846 + Tigger3b DNA MER2_type 4 205 -1026 630 149 0 47 chr12 3611635 3611742 -140174713 + FLAM_A SINE Alu 20 121 -21 1202 128 45 53 chr12 3611752 3611886 -140174569 + Tigger3b DNA MER2_type 204 337 -2691 2364 71 0 0 chr12 3611886 3612180 -140174275 + AluY SINE Alu 1 294 -17 1202 128 45 53 chr12 3612180 3612310 -140174145 + Tigger3b DNA MER2_type 337 466 -765 812 108 0 0 chr12 3612311 3612422 -140174033 - FLAM_C SINE Alu -32 111 1 29 0 0 0 chr12 3612424 3612453 -140174002 + AT_rich Low_complexity Low_complexity 1 29 0 630 141 11 0 chr12 3612486 3612578 -140173877 + FLAM_A SINE Alu 20 112 -30 622 106 0 53 chr12 3612588 3612629 -140173826 + MSTA LTR MaLR 322 364 -64 1558 158 102 11 chr12 3612629 3612914 -140173541 - AluJo SINE Alu -1 311 1 622 106 0 53 chr12 3612914 3612985 -140173470 + MSTA LTR MaLR 364 428 0 * 1290 157 23 35 chr12 3612985 3613313 -140173142 + Tigger3(Golem) DNA MER2_type 2732 3038 0 442 266 179 6 chr12 3613333 3613506 -140172949 - MIR SINE MIR -49 213 11 23 0 0 0 chr12 3614029 3614052 -140172403 + AT_rich Low_complexity Low_complexity 1 23 0 356 256 128 17 chr12 3614272 3614389 -140172066 - L1ME4a LINE L1 -28 6093 5964 388 272 44 34 chr12 3614407 3614457 -140171998 - L1ME4a LINE L1 -216 5905 5857 1888 159 0 16 chr12 3614457 3614765 -140171690 - AluJo SINE Alu -9 303 1 388 272 44 34 chr12 3614765 3614831 -140171624 - L1ME4a LINE L1 -264 5857 5793 1858 94 87 11 chr12 3614831 3615108 -140171347 + AluSp SINE Alu 1 298 -15 388 272 44 34 chr12 3615108 3615196 -140171259 - L1ME4a LINE L1 -328 5793 5698 542 281 41 12 chr12 3615729 3615900 -140170555 + MIR SINE MIR 84 259 -3 820 221 234 0 chr12 3616982 3617208 -140169247 + AluSg1 SINE Alu 1 279 -30 2194 54 54 0 chr12 3617209 3617486 -140168969 - AluY SINE Alu -19 292 1 352 298 122 50 chr12 3617543 3617646 -140168809 + MIR SINE MIR 6 100 -162 542 260 133 84 chr12 3617646 3617863 -140168592 - MER102b DNA MER1_type -1087 341 101 1944 145 0 55 chr12 3617863 3618188 -140168267 + AluJb SINE Alu 1 307 -5 542 260 133 84 chr12 3618188 3618293 -140168162 - MER102b DNA MER1_type -1327 101 3 352 298 122 50 chr12 3618293 3618427 -140168028 + MIR SINE MIR 100 260 -2 364 274 85 13 chr12 3618433 3618586 -140167869 - MIR3 SINE MIR -22 186 23 194 370 55 24 chr12 3618663 3618790 -140167665 + L2 LINE L2 3140 3270 -2 478 342 114 22 chr12 3621795 3622472 -140163983 - L2 LINE L2 -14 3258 2473 368 343 122 9 chr12 3622756 3622969 -140163486 + MIR SINE MIR 20 256 -6 1979 166 8 45 chr12 3623766 3624051 -140162404 + MER47A DNA MER2_type 1 270 -2053 2349 78 0 0 chr12 3624051 3624346 -140162109 - AluY SINE Alu -16 295 1 1979 166 8 45 chr12 3624346 3624439 -140162016 + MER47A DNA MER2_type 270 365 -1 2202 97 10 3 chr12 3624883 3625193 -140161262 - AluSq SINE Alu -1 312 1 840 142 0 8 chr12 3626990 3627124 -140159331 + FLAM_C SINE Alu 1 133 -10 216 0 0 0 chr12 3627281 3627305 -140159150 + (CAGGG)n Simple_repeat Simple_repeat 1 24 0 621 184 155 30 chr12 3627476 3627644 -140158811 + MER5A DNA MER1_type 1 189 0 331 307 150 13 chr12 3628633 3628786 -140157669 + MIR SINE MIR 86 259 -3 1817 173 0 3 chr12 3630771 3631072 -140155383 + AluJb SINE Alu 1 300 -12 387 242 44 0 chr12 3632048 3632139 -140154316 - MER5A DNA MER1_type -94 95 1 243 256 13 26 chr12 3632206 3632284 -140154171 - MER5A DNA MER1_type -93 96 20 216 0 0 0 chr12 3634945 3634969 -140151486 + (T)n Simple_repeat Simple_repeat 1 24 0 477 312 91 9 chr12 3635012 3635243 -140151212 - MIR SINE MIR -12 250 1 318 285 49 41 chr12 3635424 3635547 -140150908 + MIR SINE MIR 69 192 -70 450 288 142 14 chr12 3635595 3635814 -140150641 - MIR SINE MIR -15 247 1 219 186 0 0 chr12 3636087 3636130 -140150325 + (CA)n Simple_repeat Simple_repeat 1 43 0 1474 159 69 0 chr12 3636147 3636423 -140150032 + MER2 DNA MER2_type 48 342 -3 531 92 0 0 chr12 3636427 3636514 -140149941 + (CA)n Simple_repeat Simple_repeat 2 88 0 368 294 10 0 chr12 3638632 3638734 -140147721 + MIR SINE MIR 128 230 -32 818 250 88 0 chr12 3639613 3639805 -140146650 + MER3 DNA MER1_type 1 209 0 480 249 102 2 chr12 3640218 3640397 -140146058 - MIR SINE MIR -41 221 28 608 300 113 54 chr12 3641689 3642079 -140144376 - L2 LINE L2 0 3272 2860 449 272 105 42 chr12 3643328 3643519 -140142936 - MER115 DNA AcHobo -490 203 1 181 220 51 17 chr12 3645099 3645158 -140141297 + L2 LINE L2 2908 2968 -346 1095 186 48 5 chr12 3645711 3645921 -140140534 + MER20 DNA MER1_type 1 219 0 568 300 18 66 chr12 3646821 3647094 -140139361 - MIR SINE MIR 0 262 3 215 309 47 40 chr12 3647690 3647839 -140138616 + L2 LINE L2 2898 3047 -225 696 161 23 31 chr12 3649533 3649663 -140136792 + FLAM_C SINE Alu 15 143 0 315 0 0 0 chr12 3649716 3649751 -140136704 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 298 64 0 chr12 3652538 3652632 -140133823 + (CATG)n Simple_repeat Simple_repeat 3 102 0 212 317 0 0 chr12 3653309 3653369 -140133086 + L3 LINE CR1 1511 1570 -7 1315 214 101 14 chr12 3653846 3654201 -140132254 - MER88 LTR ERVL 0 464 79 277 340 62 7 chr12 3654259 3654403 -140132052 + MIR SINE MIR 83 234 -28 1090 209 78 76 chr12 3655870 3656292 -140130163 + L1MC5 LINE L1 7316 7738 -223 382 250 40 75 chr12 3656280 3656532 -140129923 + L1MC5 LINE L1 7668 7910 -51 * 603 222 6 11 chr12 3656577 3656753 -140129702 + GA-rich Low_complexity Low_complexity 5 179 0 501 289 115 9 chr12 3657213 3657431 -140129024 - MIR SINE MIR -12 250 10 307 258 225 0 chr12 3657636 3657756 -140128699 - MIR3 SINE MIR -59 149 3 351 296 31 0 chr12 3658516 3658614 -140127841 - MIR SINE MIR -114 148 48 737 214 40 23 chr12 3658791 3658964 -140127491 + MER104 DNA MER2_type 1 176 -4 369 311 19 0 chr12 3659112 3659218 -140127237 + MIR SINE MIR 43 150 -58 445 197 242 0 chr12 3659797 3659929 -140126526 + MER5B DNA MER1_type 15 178 0 567 295 6 22 chr12 3660664 3660847 -140125608 + MIR3 SINE MIR 1 180 -28 183 304 0 38 chr12 3661713 3661792 -140124663 + L2 LINE L2 2409 2484 -830 182 306 69 38 chr12 3661888 3662048 -140124407 + L2 LINE L2 2718 2882 -432 328 306 45 0 chr12 3662108 3662219 -140124236 + MIR SINE MIR 6 121 -141 244 333 81 49 chr12 3662743 3662989 -140123466 - L2 LINE L2 -1 3271 3018 213 175 0 0 chr12 3663701 3663741 -140122714 + GA-rich Low_complexity Low_complexity 1 40 0 478 299 51 13 chr12 3663741 3663898 -140122557 - MIR3 SINE MIR -29 179 17 2610 79 56 0 chr12 3664078 3664433 -140122022 + THE1C LTR MaLR 1 375 0 426 212 62 0 chr12 3665261 3665374 -140121081 - MER112 DNA MER1_type -8 252 133 2125 167 29 31 chr12 3665375 3665931 -140120524 - MLT2A2 LTR ERVL 0 554 1 363 288 46 86 chr12 3666092 3666242 -140120213 - MIR SINE MIR -1 261 108 1330 206 80 55 chr12 3666242 3666607 -140119848 - MLT1A2 LTR MaLR 0 374 1 363 288 46 86 chr12 3666607 3666693 -140119762 - MIR SINE MIR -154 108 20 290 297 99 0 chr12 3666927 3667038 -140119417 + L2 LINE L2 3188 3309 -4 262 280 102 8 chr12 3667057 3667175 -140119280 + MIR SINE MIR 25 153 -109 523 196 11 0 chr12 3668243 3668335 -140118120 - MER81 DNA DNA -21 93 1 595 344 130 4 chr12 3668393 3668861 -140117594 + L2 LINE L2 2100 2626 -688 249 285 39 54 chr12 3668866 3668900 -140117555 + L1ME4a LINE L1 5992 6025 -96 1942 225 44 24 chr12 3668900 3669358 -140117097 + MLT1C LTR MaLR 1 467 0 249 285 39 54 chr12 3669358 3669453 -140117002 + L1ME4a LINE L1 6025 6119 -2 1055 213 123 55 chr12 3669547 3669966 -140116489 + MER110A LTR ERV1 67 491 0 263 305 144 0 chr12 3669999 3670117 -140116338 - MIR SINE MIR -112 150 16 235 147 0 0 chr12 3670251 3670285 -140116170 + MER54A LTR ERVL 532 565 -336 240 35 0 0 chr12 3671220 3671249 -140115206 + (TC)n Simple_repeat Simple_repeat 1 29 0 876 211 83 13 chr12 3671456 3671684 -140114771 + MIR SINE MIR 19 262 0 260 235 74 74 chr12 3672770 3672851 -140113604 - MIR3 SINE MIR -5 203 123 469 153 12 12 chr12 3673012 3673097 -140113358 + MIR SINE MIR 34 118 -144 750 260 72 13 chr12 3673102 3673337 -140113118 - MIR SINE MIR -11 251 3 710 274 29 20 chr12 3673463 3673667 -140112788 + MLT1J LTR MaLR 4 209 -302 831 325 6 0 chr12 3673667 3674005 -140112450 - L1M4 LINE L1 -3427 2719 2380 2191 88 0 20 chr12 3674032 3674329 -140112126 - AluSp SINE Alu -22 291 1 986 242 30 30 chr12 3674330 3674594 -140111861 + MLT1J LTR MaLR 199 462 -49 583 229 90 12 chr12 3676420 3676548 -140109907 - MER5A DNA MER1_type 0 189 44 420 227 27 36 chr12 3676548 3676658 -140109797 + MER81 DNA DNA 2 110 -4 583 229 90 12 chr12 3676658 3676695 -140109760 - MER5A DNA MER1_type -145 44 11 221 100 0 50 chr12 3676700 3676740 -140109715 + L3 LINE CR1 1532 1569 -8 362 295 76 88 chr12 3677391 3677801 -140108654 - L2 LINE L2 -1 3271 2867 186 43 0 0 chr12 3677989 3678012 -140108443 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1521 150 8 0 chr12 3678013 3678266 -140108189 - L1MA8 LINE L1 -402 5889 5635 1377 131 71 138 chr12 3678248 3678494 -140107961 + L1MA8 LINE L1 5848 6109 -182 * 1578 78 65 0 chr12 3678494 3678711 -140107744 - L1PA6 LINE L1 0 6154 5924 2417 60 0 13 chr12 3678716 3679017 -140107438 - AluY SINE Alu -7 304 8 1377 131 71 138 chr12 3679017 3679077 -140107378 + L1MA8 LINE L1 6113 6175 -116 353 22 0 0 chr12 3679077 3679123 -140107332 - MADE1 DNA Mariner 0 80 35 1377 131 71 138 chr12 3679123 3679229 -140107226 + L1MA8 LINE L1 6175 6281 -10 230 215 129 21 chr12 3679713 3679806 -140106649 - MIR SINE MIR -86 122 20 479 268 56 0 chr12 3679838 3679980 -140106475 - MIR SINE MIR -1 261 112 1131 83 0 0 chr12 3680350 3680506 -140105949 + (TTCC)n Simple_repeat Simple_repeat 1 156 0 1783 135 0 0 chr12 3680514 3680774 -140105681 - AluSx SINE Alu -52 260 1 445 269 27 54 chr12 3681266 3681415 -140105040 + MIR SINE MIR 48 192 -70 388 212 59 34 chr12 3682295 3682317 -140104138 - MIR SINE MIR -32 230 210 1393 184 34 13 chr12 3682317 3682551 -140103904 + MER8 DNA MER2_type 1 239 0 388 212 59 34 chr12 3682551 3682646 -140103809 - MIR SINE MIR -52 210 110 281 257 40 0 chr12 3682648 3682722 -140103733 - MER94 DNA DNA -33 101 25 247 278 56 0 chr12 3683838 3683910 -140102545 - MIR SINE MIR -70 192 117 420 240 48 10 chr12 3684239 3684343 -140102112 - MER91C DNA MER1_type -30 110 3 638 263 78 10 chr12 3684724 3684917 -140101538 + MLT1J LTR MaLR 2 175 -275 812 213 41 0 chr12 3685023 3685192 -140101263 - MER5A DNA MER1_type -1 188 13 414 191 77 101 chr12 3685192 3685360 -140101095 + MLT1J LTR MaLR 312 475 -36 249 326 130 19 chr12 3685654 3685869 -140100586 + L2 LINE L2 1814 2052 -1262 189 363 133 7 chr12 3686442 3686577 -140099878 - L2 LINE L2 0 3272 3121 204 321 0 25 chr12 3687296 3687377 -140099078 + L3b LINE CR1 1317 1395 -188 21 0 0 0 chr12 3687439 3687460 -140098995 + AT_rich Low_complexity Low_complexity 1 21 0 6693 224 88 63 chr12 3687657 3689319 -140097136 - L1ME2 LINE L1 0 6184 4564 816 176 0 14 chr12 3689319 3689461 -140096994 - AluJb SINE Alu -171 141 2 6693 224 88 63 chr12 3689461 3691267 -140095188 - L1ME2 LINE L1 -1620 4564 2466 555 272 15 0 chr12 3691279 3691415 -140095040 + MLT2F LTR ERVL 4 141 -522 227 260 0 0 chr12 3691593 3691643 -140094812 + L2 LINE L2 3202 3251 -21 629 248 63 71 chr12 3691651 3691889 -140094566 + MIR SINE MIR 1 236 -26 3427 85 9 9 chr12 3692057 3692517 -140093938 + LTR46 LTR ERV1 1 460 0 312 277 92 8 chr12 3693717 3693836 -140092619 + L3b LINE CR1 1279 1407 -176 202 274 219 0 chr12 3694928 3695001 -140091454 + MIR SINE MIR 4 92 -170 440 261 17 9 chr12 3695075 3695190 -140091265 + MIR SINE MIR 129 244 -18 401 268 114 8 chr12 3695367 3695490 -140090965 + MIR SINE MIR 124 259 -3 362 299 132 20 chr12 3696537 3696709 -140089746 + MIR SINE MIR 18 205 -57 988 250 76 0 chr12 3696709 3696933 -140089522 + MIR SINE MIR 1 241 -21 875 267 71 8 chr12 3697551 3697791 -140088664 + MIR SINE MIR 6 260 -2 607 348 41 41 chr12 3698967 3699435 -140087020 - L2 LINE L2 -556 2758 2291 647 290 61 71 chr12 3699454 3700158 -140086297 + L1ME4a LINE L1 5174 5873 -248 487 276 142 39 chr12 3701912 3702144 -140084311 - MIR SINE MIR -1 261 6 248 284 0 84 chr12 3702375 3702470 -140083985 - MIR SINE MIR -70 138 52 1277 97 121 5 chr12 3703403 3703609 -140082846 + MER30 DNA MER1_type 1 230 0 665 174 193 19 chr12 3704052 3704213 -140082242 + MER5A DNA MER1_type 1 189 0 261 202 53 53 chr12 3704270 3704316 -140082139 + MER103 DNA DNA 2 47 -119 2245 65 0 7 chr12 3704316 3704607 -140081848 - AluSx SINE Alu 0 312 24 261 202 53 53 chr12 3704607 3704654 -140081801 + MER103 DNA DNA 46 95 -71 204 118 39 20 chr12 3704662 3704713 -140081742 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 242 296 62 0 chr12 3704885 3704966 -140081489 + MER5A DNA MER1_type 73 158 -31 4826 259 69 30 chr12 3707575 3709393 -140077062 + L1MEc LINE L1 100 1989 -4407 1501 201 4 26 chr12 3709393 3709666 -140076789 + Tigger7 DNA MER2_type 1 267 -466 503 219 10 0 chr12 3709664 3709760 -140076695 + Tigger7 DNA MER2_type 2390 2486 -1 * 4018 194 67 25 chr12 3709761 3711108 -140075347 + L1MB3 LINE L1 1993 6251 -1 1932 139 3 0 chr12 3711722 3712017 -140074438 - AluSx SINE Alu -16 296 1 180 0 0 0 chr12 3712295 3712315 -140074140 + (T)n Simple_repeat Simple_repeat 1 20 0 213 227 27 40 chr12 3712668 3712743 -140073712 + T-rich Low_complexity Low_complexity 5 78 0 421 291 60 86 chr12 3712849 3713467 -140072988 - HERVI LTR ERV1 -763 5886 5285 250 326 132 19 chr12 3713562 3713887 -140072568 - HERVI LTR ERV1 -1501 6284 5923 233 29 29 0 chr12 3714145 3714179 -140072276 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1650 324 25 45 chr12 3714185 3714286 -140072169 - HERVI LTR ERV1 -2026 5759 5658 2060 83 49 0 chr12 3714286 3714574 -140071881 - AluSg1 SINE Alu -7 302 1 1650 324 25 45 chr12 3714574 3715363 -140071092 - HERVI LTR ERV1 -2127 5658 4855 2295 92 0 0 chr12 3715363 3715666 -140070789 - AluSq SINE Alu -10 303 1 1650 324 25 45 chr12 3715666 3716426 -140070029 - HERVI LTR ERV1 -2930 4855 3104 566 250 133 27 chr12 3716973 3717229 -140069226 + MER102a DNA MER1_type 45 327 -3 258 344 6 25 chr12 3717594 3717751 -140068704 + CT-rich Low_complexity Low_complexity 2 155 0 458 101 0 25 chr12 3717768 3717847 -140068608 - LTR18B LTR ERVL -270 344 268 462 159 0 0 chr12 3717900 3717969 -140068486 - LTR18B LTR ERVL -212 402 334 703 318 65 58 chr12 3717970 3718735 -140067720 - HERVI LTR ERV1 -5751 2034 1264 551 363 3 7 chr12 3718914 3719203 -140067252 - HERVI LTR ERV1 -6779 1006 719 256 202 144 29 chr12 3719384 3719488 -140066967 - HERVI LTR ERV1 -6347 302 187 191 88 29 0 chr12 3719913 3719947 -140066508 + (TTG)n Simple_repeat Simple_repeat 2 36 0 751 305 56 13 chr12 3720294 3720599 -140065856 + L2 LINE L2 2996 3313 0 282 116 0 0 chr12 3720599 3720642 -140065813 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 190 285 130 41 chr12 3721298 3721314 -140065141 + MER5A DNA MER1_type 5 31 -158 683 132 88 137 chr12 3721314 3721432 -140065023 - MER5A DNA MER1_type -2 187 80 1198 35 0 0 chr12 3721432 3721575 -140064880 - L1PA4 LINE L1 -3 6152 6010 683 132 88 137 chr12 3721575 3721638 -140064817 - MER5A DNA MER1_type -109 80 15 577 272 31 0 chr12 3721826 3721988 -140064467 + MIR SINE MIR 84 250 -12 213 298 0 0 chr12 3723942 3723999 -140062456 - MIR SINE MIR -118 90 34 180 111 0 0 chr12 3724152 3724179 -140062276 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 372 324 205 42 chr12 3724288 3724884 -140061571 - L2 LINE L2 -741 2573 1881 1372 139 0 17 chr12 3726402 3726639 -140059816 - L1MA5A LINE L1 -4 6293 6061 466 329 140 40 chr12 3727360 3728304 -140058151 - L2 LINE L2 -5 3267 2156 1264 125 0 0 chr12 3729019 3729211 -140057244 + AluSg/x SINE Alu 121 312 0 2471 56 0 0 chr12 3729537 3729843 -140056612 + AluY SINE Alu 1 306 -5 565 262 94 53 chr12 3730651 3730895 -140055560 - MIR SINE MIR 0 262 9 493 384 20 0 chr12 3731250 3731448 -140055007 + MIR SINE MIR 58 259 -3 480 157 22 11 chr12 3731636 3731725 -140054730 + MLT1C LTR MaLR 3 92 -375 44128 29 21 1 chr12 3731729 3737762 -140048693 + L1HS LINE L1 1 6155 0 28 0 0 0 chr12 3737770 3737798 -140048657 + AT_rich Low_complexity Low_complexity 1 28 0 1826 192 45 11 chr12 3737798 3738173 -140048282 + MLT1C LTR MaLR 80 467 0 443 324 7 14 chr12 3738647 3738789 -140047666 + MIR SINE MIR 8 148 -114 194 302 38 0 chr12 3739076 3739129 -140047326 + MIR3 SINE MIR 151 205 -3 335 325 165 34 chr12 3739451 3739688 -140046767 + L3b LINE CR1 1290 1557 -26 21 0 0 0 chr12 3740024 3740045 -140046410 + AT_rich Low_complexity Low_complexity 1 21 0 510 230 241 16 chr12 3740220 3740411 -140046044 - MIR SINE MIR 0 262 29 234 0 0 0 chr12 3740717 3740743 -140045712 + (A)n Simple_repeat Simple_repeat 1 26 0 410 298 0 15 chr12 3741421 3741552 -140044903 - L2 LINE L2 -212 3060 2932 305 288 144 0 chr12 3742011 3742164 -140044291 - MIR SINE MIR -6 256 82 413 206 56 86 chr12 3742469 3742638 -140043817 + MIR SINE MIR 37 196 -63 218 333 81 18 chr12 3742687 3742798 -140043657 + L2 LINE L2 3147 3264 -8 513 0 0 0 chr12 3745068 3745125 -140041330 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 0 0 0 chr12 3745643 3745664 -140040791 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr12 3745852 3745881 -140040574 + GC_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr12 3746237 3746282 -140040173 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 59 0 0 chr12 3747099 3747150 -140039305 + (TG)n Simple_repeat Simple_repeat 1 51 0 404 299 76 11 chr12 3747425 3747609 -140038846 - MIR3 SINE MIR -9 199 4 289 279 95 27 chr12 3747970 3748117 -140038338 + MLT1G1 LTR MaLR 439 595 0 184 214 0 48 chr12 3748135 3748177 -140038278 + L2 LINE L2 3259 3298 -15 187 330 0 23 chr12 3748267 3748355 -140038100 - L2 LINE L2 -1 3312 3227 218 254 55 0 chr12 3748603 3748658 -140037797 + MIR SINE MIR 195 252 -10 542 275 192 0 chr12 3748724 3748906 -140037549 - MIR SINE MIR -15 247 31 715 205 112 6 chr12 3748945 3749106 -140037349 - MER5B DNA MER1_type 0 178 1 264 368 97 26 chr12 3749309 3749464 -140036991 + L3 LINE CR1 1412 1577 0 24 0 0 0 chr12 3750657 3750681 -140035774 + AT_rich Low_complexity Low_complexity 1 24 0 371 299 50 86 chr12 3751111 3751449 -140035006 - L1MC4a LINE L1 -86 6035 5710 328 255 131 48 chr12 3752272 3752417 -140034038 + MIR SINE MIR 79 235 -27 486 268 22 29 chr12 3752491 3752629 -140033826 + MIR3 SINE MIR 5 141 -67 457 287 18 17 chr12 3753754 3753961 -140032494 - MIR SINE MIR -21 241 36 426 253 31 62 chr12 3753968 3754130 -140032325 + MIR SINE MIR 24 180 -82 310 250 43 11 chr12 3756292 3756384 -140030071 + MIR3 SINE MIR 6 100 -108 260 289 87 0 chr12 3756444 3756548 -140029907 + MIR3 SINE MIR 87 199 -9 653 82 10 0 chr12 3758619 3758716 -140027739 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 281 306 120 28 chr12 3759580 3759688 -140026767 + L2 LINE L2 3154 3271 -1 219 386 95 21 chr12 3760636 3760825 -140025630 - L3b LINE CR1 -92 1491 1289 432 326 81 52 chr12 3762056 3762498 -140023957 - L2 LINE L2 -1 3271 2817 411 294 79 1 chr12 3762587 3762734 -140023721 - MIR SINE MIR -61 147 35 651 343 55 75 chr12 3762767 3763999 -140022456 - L2 LINE L2 -505 2809 1603 610 276 86 17 chr12 3764293 3764525 -140021930 - MIR SINE MIR -2 260 13 213 121 0 0 chr12 3764566 3764599 -140021856 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 1356 204 87 9 chr12 3767223 3767556 -140018899 - L1MB7 LINE L1 0 6184 5826 1931 244 84 16 chr12 3768376 3768949 -140017506 + MER90 LTR ERV1 3 614 0 2601 54 0 10 chr12 3769689 3770002 -140016453 - AluY SINE Alu -1 310 1 382 298 61 0 chr12 3770441 3770558 -140015897 - MIR SINE MIR -40 168 43 450 305 11 9 chr12 3770679 3770829 -140015626 - MIR3 SINE MIR -45 163 47 253 305 29 19 chr12 3771295 3771400 -140015055 + L2 LINE L2 2715 2820 -494 713 145 23 8 chr12 3771491 3771622 -140014833 - MER101 LTR ERV1 -4 470 338 33 25 0 0 chr12 3771622 3771662 -140014793 + AT_rich Low_complexity Low_complexity 1 40 0 380 152 42 0 chr12 3771662 3771827 -140014628 + (TA)n Simple_repeat Simple_repeat 1 172 0 2028 80 36 25 chr12 3771827 3772101 -140014354 - AluSp SINE Alu -22 291 15 993 157 141 0 chr12 3772109 3772294 -140014161 - MER101B LTR ERV1 -126 444 234 247 225 225 0 chr12 3772331 3772420 -140014035 + L2 LINE L2 3205 3313 0 809 183 26 26 chr12 3773198 3773351 -140013104 + FRAM SINE Alu 1 151 -25 209 252 233 48 chr12 3773392 3773495 -140012960 - MIR SINE MIR -139 123 2 365 107 165 29 chr12 3773728 3773820 -140012635 + MIR SINE MIR 58 154 -62 1383 177 90 3 chr12 3774315 3774615 -140011840 + LTR56 LTR ERV1 9 334 -111 734 94 9 0 chr12 3774617 3774723 -140011732 - L1PA13 LINE L1 -370 5791 5685 2311 113 21 0 chr12 3774723 3775056 -140011399 + L1PA13 LINE L1 5811 6153 -10 273 238 36 12 chr12 3775141 3775225 -140011230 + LTR23 LTR ERV1 352 437 0 545 238 67 47 chr12 3776172 3776365 -140010090 + MIR SINE MIR 8 204 -58 313 273 91 0 chr12 3776773 3776861 -140009594 + MIR3 SINE MIR 85 180 -28 2330 90 30 0 chr12 3778821 3779120 -140007335 + AluSc SINE Alu 1 308 -1 1888 157 10 7 chr12 3779349 3779649 -140006806 + AluJo SINE Alu 1 301 -11 234 0 0 0 chr12 3779867 3779893 -140006562 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 519 306 42 14 chr12 3780824 3781040 -140005415 - MIR SINE MIR -21 241 20 202 271 57 43 chr12 3781109 3781179 -140005276 + MIR SINE MIR 94 164 -98 412 127 0 0 chr12 3781691 3781754 -140004701 - LTR26 LTR ERV1 0 603 541 3028 169 37 2 chr12 3781760 3782321 -140004134 - LTR26 LTR ERV1 -22 581 1 285 29 0 0 chr12 3784607 3784641 -140001814 + (TG)n Simple_repeat Simple_repeat 2 35 0 1348 112 5 0 chr12 3784641 3784837 -140001618 - L1PA13 LINE L1 -16 6147 5951 756 238 28 6 chr12 3785564 3785745 -140000710 + MIR3 SINE MIR 23 207 -1 4674 189 75 6 chr12 3785861 3785902 -140000553 + Charlie1a DNA MER1_type 14 51 -2710 198 0 0 0 chr12 3785902 3785924 -140000531 + (G)n Simple_repeat Simple_repeat 1 22 0 4674 189 75 6 chr12 3785924 3786964 -139999491 + Charlie1a DNA MER1_type 51 1170 -285 6724 76 12 10 chr12 3786966 3788256 -139998199 + L1PA10 LINE L1 4890 6168 0 754 166 153 0 chr12 3788301 3788458 -139997997 + MER20 DNA MER1_type 33 213 -6 713 121 258 0 chr12 3788463 3788653 -139997802 + Charlie1a DNA MER1_type 1187 1425 -30 1881 143 0 40 chr12 3788655 3788955 -139997500 + AluJo SINE Alu 3 290 -22 460 226 34 85 chr12 3789380 3789557 -139996898 - L2 LINE L2 -220 3052 2885 278 111 44 0 chr12 3791463 3791508 -139994947 - MIR SINE MIR -33 229 183 1080 289 64 50 chr12 3793040 3793664 -139992791 - L2 LINE L2 -349 2965 2333 2154 102 0 0 chr12 3794001 3794286 -139992169 + AluSg SINE Alu 1 285 -25 508 306 81 61 chr12 3794604 3795172 -139991283 - L1 LINE L1 -2883 3263 2699 199 208 21 0 chr12 3795372 3795420 -139991035 - L2 LINE L2 -23 3249 3201 182 241 35 35 chr12 3795460 3795518 -139990937 - L2 LINE L2 -322 2991 2934 513 206 86 89 chr12 3795646 3795971 -139990484 - Charlie7 DNA MER1_type -97 2515 2192 1047 251 108 43 chr12 3796056 3796464 -139989991 - Charlie7 DNA MER1_type -2047 565 185 275 0 29 0 chr12 3796464 3796499 -139989956 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 2024 86 0 14 chr12 3796499 3796779 -139989676 - AluSc SINE Alu -33 276 1 1047 251 108 43 chr12 3796779 3796852 -139989603 - Charlie7 DNA MER1_type -2426 186 52 271 294 101 25 chr12 3796887 3797006 -139989449 - MIR SINE MIR -64 144 17 393 282 84 35 chr12 3799050 3799252 -139987203 - MIR SINE MIR -17 245 34 261 0 0 0 chr12 3799306 3799335 -139987120 + (TA)n Simple_repeat Simple_repeat 2 30 0 1417 127 14 0 chr12 3799384 3799596 -139986859 + L1PA15 LINE L1 5948 6162 -3 336 340 19 31 chr12 3799611 3799773 -139986682 + L1MC4a LINE L1 5770 5929 -1879 182 37 37 0 chr12 3800462 3800489 -139985966 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 2251 93 3 0 chr12 3801138 3801448 -139985007 + AluY SINE Alu 1 311 0 2197 97 0 0 chr12 3801689 3801989 -139984466 + AluSx SINE Alu 1 300 -12 2062 98 28 0 chr12 3803054 3803340 -139983115 + AluSx SINE Alu 1 294 -18 811 212 26 36 chr12 3803396 3803589 -139982866 + MIR SINE MIR 58 248 -14 537 320 65 7 chr12 3803729 3804004 -139982451 + L1ME LINE L1 5370 5660 -504 186 118 0 0 chr12 3804159 3804193 -139982262 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 363 320 120 16 chr12 3805098 3805407 -139981048 + L2 LINE L2 1729 2069 -1245 416 340 97 43 chr12 3805454 3805939 -139980516 + L2 LINE L2 2365 2875 -439 353 277 142 64 chr12 3805922 3806189 -139980266 + L2 LINE L2 2985 3272 0 * 197 263 105 0 chr12 3806421 3806497 -139979958 - MIR SINE MIR -56 206 123 1993 192 66 27 chr12 3806542 3806984 -139979471 + LTR2B LTR ERV1 32 490 0 33162 113 40 51 chr12 3806984 3814114 -139972341 + Harlequin LTR ERV1 1 6896 0 1763 204 54 36 chr12 3814114 3814324 -139972131 + LTR2 LTR ERV1 1 206 -243 228 67 0 0 chr12 3814324 3814354 -139972101 + (TTCTG)n Simple_repeat Simple_repeat 1 30 0 1763 204 54 36 chr12 3814354 3814584 -139971871 + LTR2 LTR ERV1 206 449 0 297 114 0 0 chr12 3814792 3814836 -139971619 - MIR SINE MIR -64 144 101 418 163 0 81 chr12 3816593 3816679 -139969776 - MIR SINE MIR -111 151 73 553 139 19 0 chr12 3816893 3817001 -139969454 + CT-rich Low_complexity Low_complexity 1 110 0 308 292 45 0 chr12 3817726 3817815 -139968640 + MIR SINE MIR 38 130 -78 1048 251 22 4 chr12 3818851 3819078 -139967377 - MIR SINE MIR 0 262 32 181 345 41 48 chr12 3820418 3820563 -139965892 - L2 LINE L2 -3 3310 3167 470 214 101 44 chr12 3821076 3821235 -139965220 + MIR3 SINE MIR 18 185 -23 3727 158 51 3 chr12 3821334 3821943 -139964512 + MER21B LTR ERV1 1 638 -225 438 263 135 13 chr12 3821943 3822124 -139964331 + LTR1 LTR ERV1 48 248 -568 668 203 29 37 chr12 3822175 3822345 -139964110 + LTR1B LTR ERV1 332 1216 -62 494 145 99 138 chr12 3822556 3822708 -139963747 + MER21B LTR ERV1 693 912 -19 384 248 70 16 chr12 3822819 3822948 -139963507 - L1ME4a LINE L1 -17 6104 5969 1275 131 29 5 chr12 3822960 3823166 -139963289 + MER2 DNA MER2_type 1 211 -134 925 199 25 0 chr12 3823205 3823366 -139963089 + Tigger3(Golem) DNA MER2_type 1 165 -2864 * 1141 113 0 0 chr12 3823355 3823514 -139962941 + Tigger3(Golem) DNA MER2_type 2175 2333 -696 1704 124 4 0 chr12 3823514 3823755 -139962700 - THE1B LTR MaLR 0 364 123 374 82 0 33 chr12 3823746 3823807 -139962648 + AluSq/x SINE Alu 81 139 -164 * 1019 98 0 0 chr12 3824045 3824177 -139962278 + AluSg SINE Alu 1 132 -178 648 149 79 0 chr12 3824180 3824294 -139962161 - THE1B LTR MaLR -252 123 1 3963 118 62 6 chr12 3824297 3824957 -139961498 + Tigger3(Golem) DNA MER2_type 2332 3028 -1 331 221 29 0 chr12 3824957 3825021 -139961434 + MER2 DNA MER2_type 280 345 0 991 183 213 39 chr12 3825026 3825387 -139961068 - MSTC LTR MaLR -4 424 1 2298 92 0 0 chr12 3826151 3826457 -139959998 + AluSg SINE Alu 1 306 -4 7116 200 40 21 chr12 3826978 3828425 -139958030 + L1M2a LINE L1 646 2121 -5043 1460 217 0 10 chr12 3828425 3828729 -139957726 + AluJb SINE Alu 5 305 -7 390 174 41 0 chr12 3828737 3828835 -139957620 + GA-rich Low_complexity Low_complexity 4 105 0 2886 174 14 86 chr12 3828845 3829637 -139956818 + L1M2a LINE L1 2096 2830 -4338 2961 85 0 0 chr12 3829637 3830012 -139956443 + THE1C LTR MaLR 1 375 0 9761 114 49 38 chr12 3830014 3831573 -139954882 + THE1C-int LTR MaLR 4 1580 0 2743 97 14 3 chr12 3831573 3831944 -139954511 + THE1C LTR MaLR 1 375 0 880 271 48 11 chr12 3831950 3832323 -139954132 + L1M2a LINE L1 3294 3680 -3487 697 212 28 79 chr12 3832326 3832562 -139953893 + L1ME3A LINE L1 5911 6129 -33 21 36 0 0 chr12 3832691 3832719 -139953736 + AT_rich Low_complexity Low_complexity 1 28 0 259 247 93 10 chr12 3832872 3832969 -139953486 + L1MC4 LINE L1 7929 8033 -9 2182 98 10 0 chr12 3833059 3833356 -139953099 - AluSx SINE Alu -8 304 5 272 237 64 103 chr12 3833371 3833465 -139952990 - L1ME LINE L1 -394 5727 5640 14265 134 14 13 chr12 3833465 3835788 -139950667 - L1PA11 LINE L1 0 6174 3839 2251 95 10 10 chr12 3835788 3836093 -139950362 - AluSp SINE Alu -8 305 1 14265 134 14 13 chr12 3836093 3836940 -139949515 - L1PA11 LINE L1 -2335 3839 2994 272 237 64 103 chr12 3836940 3837001 -139949454 - L1ME LINE L1 -481 5640 5578 43883 32 23 1 chr12 3838724 3844743 -139941712 + L1PA3 LINE L1 1 6151 -4 25 0 0 0 chr12 3844743 3844768 -139941687 + AT_rich Low_complexity Low_complexity 1 25 0 279 339 70 39 chr12 3844768 3845108 -139941347 + L2 LINE L2 2766 3114 -158 369 305 141 8 chr12 3845152 3845280 -139941175 - L2 LINE L2 -2 3270 3126 763 274 140 17 chr12 3845294 3845832 -139940623 + L2 LINE L2 2704 3313 0 394 264 33 33 chr12 3846038 3846159 -139940296 - L2 LINE L2 -4 3268 3148 723 257 45 10 chr12 3846256 3846458 -139939997 + MIR SINE MIR 12 220 -42 293 294 56 24 chr12 3847340 3847466 -139938989 + L2 LINE L2 3142 3271 -1 186 43 0 0 chr12 3847475 3847498 -139938957 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 450 246 59 0 chr12 3847636 3847754 -139938701 + MIR3 SINE MIR 53 177 -31 820 208 42 21 chr12 3848204 3848396 -139938059 + MIR SINE MIR 3 198 -64 1845 237 55 101 chr12 3848403 3849276 -139937179 + L1MC4 LINE L1 7210 8042 0 198 222 0 0 chr12 3849302 3849338 -139937117 + L2 LINE L2 3263 3298 -15 180 343 14 14 chr12 3849430 3849500 -139936955 + MIR SINE MIR 77 146 -116 244 384 34 34 chr12 3849804 3849950 -139936505 - L2 LINE L2 -8 3264 3119 2244 98 10 0 chr12 3849950 3850256 -139936199 + AluSg SINE Alu 1 309 -1 191 216 0 0 chr12 3850323 3850360 -139936095 + L2 LINE L2 3277 3313 0 255 103 0 0 chr12 3851007 3851046 -139935409 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 625 261 24 6 chr12 3851669 3851834 -139934621 + MIR SINE MIR 87 254 -8 524 246 25 0 chr12 3852032 3852158 -139934297 + MER20B DNA MER1_type 69 202 -17 414 188 145 0 chr12 3852206 3852323 -139934132 + MLT1L LTR MaLR 168 301 -314 437 295 39 19 chr12 3852396 3852552 -139933903 + MLT1L LTR MaLR 446 604 -11 5419 197 31 24 chr12 3852592 3853182 -139933273 + L1MD1 LINE L1 3872 4457 -1785 1884 147 68 34 chr12 3853182 3853535 -139932920 - MLT1A1 LTR MaLR 0 365 1 5419 197 31 24 chr12 3853535 3855311 -139931144 + L1MD1 LINE L1 4457 6240 -2 253 260 64 101 chr12 3856335 3856554 -139929901 + MLT1J LTR MaLR 99 309 -202 258 365 83 6 chr12 3857079 3857235 -139929220 - MIR SINE MIR -62 200 33 899 279 60 53 chr12 3857643 3858323 -139928132 - L2 LINE L2 0 3313 2630 320 277 50 10 chr12 3858397 3858498 -139927957 - MER91C DNA MER1_type 0 140 36 195 42 0 0 chr12 3858895 3858919 -139927536 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 709 70 0 0 chr12 3858921 3859007 -139927448 - L1PA10 LINE L1 -23 6145 6060 579 212 153 51 chr12 3859009 3859264 -139927191 - L2 LINE L2 -3 3310 3030 2307 94 31 22 chr12 3859984 3860303 -139926152 - THE1B LTR MaLR -42 322 1 299 304 123 0 chr12 3860399 3860537 -139925918 + MIR3 SINE MIR 47 201 -7 432 376 73 6 chr12 3861101 3861266 -139925189 - MER91A DNA MER1_type -5 191 16 334 352 39 66 chr12 3861822 3862078 -139924377 - L2 LINE L2 -189 3083 2835 306 0 0 0 chr12 3862142 3862176 -139924279 + (CCA)n Simple_repeat Simple_repeat 1 34 0 763 209 20 0 chr12 3862348 3862496 -139923959 - MER45A DNA AcHobo 0 178 28 1252 150 75 66 chr12 3863745 3864065 -139922390 - MER33 DNA MER1_type 0 324 2 742 299 66 71 chr12 3864167 3864619 -139921836 - L1MEc LINE L1 -3886 2510 2061 196 169 17 34 chr12 3864917 3864976 -139921479 + (TATG)n Simple_repeat Simple_repeat 4 61 0 317 291 91 43 chr12 3865014 3865268 -139921187 + L1ME4a LINE L1 5631 5896 -225 339 291 26 51 chr12 3865301 3865418 -139921037 + HAL1b LINE L1 1222 1335 -13 282 73 0 0 chr12 3866292 3866333 -139920122 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 411 167 0 0 chr12 3866345 3866417 -139920038 - FLAM SINE Alu -19 124 53 298 167 56 0 chr12 3866417 3866471 -139919984 + AluJ/FLAM SINE Alu 6 62 -240 315 0 0 0 chr12 3866887 3866922 -139919533 + (TG)n Simple_repeat Simple_repeat 1 35 0 201 237 0 0 chr12 3867357 3867395 -139919060 - MIR SINE MIR -58 150 113 550 248 0 16 chr12 3867831 3867956 -139918499 + MER3 DNA MER1_type 40 162 -47 1137 204 24 67 chr12 3867959 3868332 -139918123 + MER3 DNA MER1_type 2234 2590 0 277 191 15 73 chr12 3868856 3868924 -139917531 - LTR16A LTR ERVL -5 445 382 377 275 18 0 chr12 3869109 3869218 -139917237 - LTR16A LTR ERVL -101 349 239 22 56 0 0 chr12 3870927 3870963 -139915492 + GC_rich Low_complexity Low_complexity 1 36 0 236 301 82 56 chr12 3871897 3872093 -139914362 + MIR SINE MIR 12 212 -50 195 42 0 0 chr12 3872606 3872630 -139913825 + (GGGGA)n Simple_repeat Simple_repeat 3 26 0 1151 131 0 0 chr12 3872733 3872901 -139913554 - AluSq SINE Alu -145 168 1 265 280 60 20 chr12 3872975 3873075 -139913380 + MIR SINE MIR 43 146 -62 586 287 164 15 chr12 3873090 3873358 -139913097 + L2 LINE L2 3005 3312 -1 2375 58 7 10 chr12 3874282 3874591 -139911864 - AluY SINE Alu -3 308 1 404 311 26 1 chr12 3875102 3875257 -139911198 + MIR SINE MIR 3 169 -39 820 164 0 0 chr12 3876019 3876147 -139910308 + FLAM_C SINE Alu 1 128 -5 949 152 35 23 chr12 3876443 3876614 -139909841 - AluJb SINE Alu -9 303 131 2672 211 45 12 chr12 3876631 3877208 -139909247 - MER45B DNA AcHobo -444 596 1 720 173 36 36 chr12 3878194 3878362 -139908093 + MER58C DNA MER1_type 47 214 -1 409 295 29 0 chr12 3878430 3878535 -139907920 - MER5B DNA MER1_type -63 115 8 762 146 129 23 chr12 3878547 3878718 -139907737 + MER5A DNA MER1_type 1 189 0 201 146 122 0 chr12 3878869 3878910 -139907545 - MIR SINE MIR -67 141 96 822 262 59 5 chr12 3879301 3879522 -139906933 - MIR SINE MIR 0 262 30 270 259 133 49 chr12 3880052 3880195 -139906260 + MIR3 SINE MIR 24 178 -30 189 171 24 146 chr12 3880760 3880842 -139905613 + MIR3 SINE MIR 5 76 -132 182 286 65 26 chr12 3881542 3881619 -139904836 - MIR SINE MIR -115 147 68 327 113 0 0 chr12 3882420 3882473 -139903982 + L1MB4 LINE L1 6127 6179 -1 204 312 39 39 chr12 3882526 3882603 -139903852 + MIR3 SINE MIR 130 206 -2 377 212 80 80 chr12 3882908 3883059 -139903396 - MIR3 SINE MIR -55 153 3 210 352 33 22 chr12 3883574 3883665 -139902790 - L3b LINE CR1 -87 1496 1405 209 364 10 10 chr12 3883871 3883970 -139902485 - MER5A DNA MER1_type -6 183 85 224 302 105 0 chr12 3884044 3884130 -139902325 + MIR3 SINE MIR 3 97 -111 * 242 297 44 0 chr12 3884123 3884214 -139902241 + MIR SINE MIR 113 207 -55 518 271 0 0 chr12 3884226 3884359 -139902096 - MER94 DNA DNA -1 133 1 214 284 167 59 chr12 3884846 3885050 -139901405 - L2 LINE L2 0 3272 3047 38 98 0 0 chr12 3886091 3886213 -139900242 + AT_rich Low_complexity Low_complexity 1 122 0 311 216 22 97 chr12 3886275 3886409 -139900046 + L1MCa LINE L1 1995 2118 -4308 1222 160 0 0 chr12 3886784 3886972 -139899483 - MER5A DNA MER1_type 0 189 2 1494 115 0 37 chr12 3887919 3888162 -139898293 + AluJo SINE Alu 79 312 0 432 283 58 74 chr12 3888463 3888639 -139897816 + L1MC4a LINE L1 5764 5934 -1874 562 213 24 0 chr12 3888639 3888766 -139897689 + L1MD2 LINE L1 6215 6344 -15 432 283 58 74 chr12 3888766 3888900 -139897555 + L1MC4a LINE L1 5934 6069 -1739 1535 156 126 58 chr12 3889105 3889470 -139896985 + MLT1B LTR MaLR 1 390 0 418 227 273 0 chr12 3890834 3890962 -139895493 + MER5A DNA MER1_type 6 168 -21 186 398 17 0 chr12 3891293 3891411 -139895044 + L3b LINE CR1 1279 1398 -185 532 312 169 61 chr12 3891924 3892315 -139894140 - L3 LINE CR1 -18 1559 1127 318 50 0 0 chr12 3893141 3893181 -139893274 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 353 29 36 chr12 3894481 3894620 -139891835 + L3 LINE CR1 1365 1502 -75 1663 164 24 24 chr12 3894986 3895278 -139891177 + AluJo SINE Alu 1 292 -20 604 128 0 0 chr12 3895308 3895386 -139891069 + AluJb SINE Alu 213 290 -22 237 235 12 37 chr12 3895469 3895550 -139890905 + L1ME4a LINE L1 5938 6016 -105 203 336 55 36 chr12 3895623 3895720 -139890735 + L3b LINE CR1 1239 1340 -243 1421 114 59 9 chr12 3895720 3895939 -139890516 + MER30 DNA MER1_type 1 230 0 203 336 55 36 chr12 3895939 3895951 -139890504 + L3b LINE CR1 1340 1350 -233 345 312 19 18 chr12 3896850 3896985 -139889470 - MIR SINE MIR -63 145 10 343 284 74 0 chr12 3897151 3897246 -139889209 + MIR SINE MIR 34 135 -127 2024 120 42 0 chr12 3897488 3897772 -139888683 - AluSx SINE Alu -16 296 1 279 262 81 114 chr12 3897817 3897966 -139888489 - MIR SINE MIR -71 191 48 822 226 86 53 chr12 3898700 3898943 -139887512 + MIR SINE MIR 12 262 0 202 352 0 14 chr12 3898947 3899018 -139887437 + MIR SINE MIR 52 121 -87 249 293 114 8 chr12 3899037 3899160 -139887295 - MER5A DNA MER1_type 0 189 54 * 416 273 16 16 chr12 3899057 3899178 -139887277 + MER5A DNA MER1_type 43 163 -26 266 269 0 30 chr12 3899298 3899365 -139887090 + L2 LINE L2 3200 3264 -8 1216 257 65 24 chr12 3899782 3900618 -139885837 + L1MCc LINE L1 1138 2013 -4889 207 0 0 0 chr12 3901244 3901267 -139885188 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 368 173 25 0 chr12 3901409 3901490 -139884965 + GA-rich Low_complexity Low_complexity 2 84 0 543 259 129 24 chr12 3902388 3902558 -139883897 - MIR SINE MIR -28 234 47 379 263 11 0 chr12 3905000 3905095 -139881360 - MIR SINE MIR -17 245 150 318 180 16 0 chr12 3905095 3905156 -139881299 - MER8 DNA MER2_type 0 239 178 2048 156 83 22 chr12 3905163 3905420 -139881035 + Tigger2 DNA MER2_type 2284 2577 -141 2464 71 7 0 chr12 3905420 3905717 -139880738 - AluSq SINE Alu -14 299 1 2048 156 83 22 chr12 3905717 3905869 -139880586 + Tigger2 DNA MER2_type 2577 2718 0 234 195 0 0 chr12 3905878 3905919 -139880536 - MIR SINE MIR -123 139 99 528 322 79 9 chr12 3906125 3906352 -139880103 + MIR SINE MIR 19 261 -1 223 109 55 18 chr12 3907788 3907843 -139878612 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 238 269 75 0 chr12 3908075 3908142 -139878313 - MER91A DNA MER1_type -111 85 14 255 244 11 67 chr12 3908299 3908389 -139878066 - L2 LINE L2 -14 3258 3174 195 333 61 0 chr12 3909670 3909769 -139876686 - MIR SINE MIR -56 206 102 730 215 11 45 chr12 3910758 3910935 -139875520 + MER63A DNA MER1_type 40 210 0 455 291 58 54 chr12 3910958 3911181 -139875274 + L2 LINE L2 3090 3313 0 271 381 19 19 chr12 3911199 3911354 -139875101 + L3 LINE CR1 265 419 -1158 547 189 47 0 chr12 3911411 3911517 -139874938 + MER63 DNA MER1_type 1 737 -325 487 279 87 6 chr12 3911600 3911772 -139874683 - MIR SINE MIR -54 208 23 241 277 161 65 chr12 3911778 3911933 -139874522 + L3 LINE CR1 421 590 -987 279 300 69 64 chr12 3912030 3912263 -139874192 + L3 LINE CR1 782 1015 -562 330 357 60 0 chr12 3912545 3912727 -139873728 - MIR SINE MIR -5 257 65 2144 255 98 11 chr12 3913842 3914431 -139872024 + L1MC4 LINE L1 6448 6984 -1058 228 35 0 0 chr12 3914431 3914460 -139871995 + (GCTG)n Simple_repeat Simple_repeat 4 32 0 * 621 91 0 27 chr12 3914459 3914569 -139871886 + (TAGA)n Simple_repeat Simple_repeat 3 109 0 2144 255 98 11 chr12 3914460 3915180 -139871275 + L1MC4 LINE L1 6984 7899 -143 186 189 0 0 chr12 3915246 3915283 -139871172 + GA-rich Low_complexity Low_complexity 1 37 0 221 202 34 0 chr12 3915766 3915837 -139870618 + MIR SINE MIR 99 170 -62 1543 272 102 105 chr12 3916103 3918425 -139868030 + L2 LINE L2 967 3273 -40 228 67 0 0 chr12 3919453 3919483 -139866972 + (GGA)n Simple_repeat Simple_repeat 1 30 0 310 321 9 9 chr12 3919920 3920026 -139866429 - MIR SINE MIR -66 142 37 201 174 101 43 chr12 3921012 3921081 -139865374 + MIR SINE MIR 13 85 -177 302 274 5 59 chr12 3921184 3921262 -139865193 + CT-rich Low_complexity Low_complexity 1 82 -94 1971 101 4 0 chr12 3921262 3921519 -139864936 - AluSx SINE Alu -10 302 45 302 274 5 59 chr12 3921519 3921626 -139864829 + CT-rich Low_complexity Low_complexity 82 176 0 269 267 23 0 chr12 3921582 3921668 -139864787 + (TCTCTG)n Simple_repeat Simple_repeat 3 90 0 * 189 147 0 0 chr12 3921684 3921718 -139864737 + (TC)n Simple_repeat Simple_repeat 1 34 0 880 228 28 26 chr12 3922897 3923124 -139863331 - MIR SINE MIR -20 242 18 2513 67 0 22 chr12 3923787 3924100 -139862355 + AluY SINE Alu 1 306 -5 360 0 0 0 chr12 3924151 3924191 -139862264 + (TG)n Simple_repeat Simple_repeat 2 41 0 514 271 183 12 chr12 3924286 3924537 -139861918 - MLT1L LTR MaLR -12 603 310 258 269 0 13 chr12 3924696 3924774 -139861681 - MLT1L LTR MaLR -538 77 1 2087 177 44 2 chr12 3926008 3926420 -139860035 - MLT1C LTR MaLR 0 467 39 1119 232 103 31 chr12 3927108 3927565 -139858890 - L1MC4a LINE L1 -1631 6177 5688 426 275 84 54 chr12 3927618 3927916 -139858539 + Charlie8 DNA MER1_type 140 446 -1971 319 365 39 11 chr12 3928157 3928335 -139858120 - MIR SINE MIR -78 184 2 2136 132 0 3 chr12 3928346 3928641 -139857814 - AluSc SINE Alu -15 294 1 268 260 13 26 chr12 3928887 3928964 -139857491 - L2 LINE L2 -2 3270 3195 183 140 80 40 chr12 3930103 3930153 -139856302 + MIR3 SINE MIR 109 160 -48 835 173 13 0 chr12 3930162 3930312 -139856143 - L1PA16 LINE L1 0 6166 6015 2464 81 3 0 chr12 3930890 3931188 -139855267 - AluSc SINE Alu -10 299 1 252 143 0 0 chr12 3931190 3931232 -139855223 + (T)n Simple_repeat Simple_repeat 1 42 0 498 180 10 0 chr12 3931636 3931736 -139854719 + MER20B DNA MER1_type 515 615 -168 576 108 12 0 chr12 3931736 3931819 -139854636 + U6 snRNA snRNA 1 84 -23 423 181 116 55 chr12 3931857 3932056 -139854399 + MER20B DNA MER1_type 573 783 0 355 246 66 72 chr12 3932254 3932421 -139854034 - MER5B DNA MER1_type -12 166 1 1129 216 144 29 chr12 3932443 3932870 -139853585 + MLT1D LTR MaLR 27 389 -1 304 333 29 9 chr12 3934859 3934964 -139851491 - L2 LINE L2 -32 3240 3134 555 299 45 0 chr12 3935060 3935217 -139851238 - MIR3 SINE MIR -32 176 13 316 240 240 24 chr12 3935646 3935771 -139850684 + MIR SINE MIR 81 232 -30 392 320 93 0 chr12 3935866 3936016 -139850439 - L2 LINE L2 -7 3265 3102 450 211 35 0 chr12 3936237 3936351 -139850104 - L1ME4a LINE L1 -48 6073 5956 869 171 94 29 chr12 3936461 3936631 -139849824 - AluJo SINE Alu -13 299 119 278 104 0 21 chr12 3936631 3936679 -139849776 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 987 120 0 0 chr12 3936679 3936812 -139849643 - AluJo SINE Alu -169 133 1 207 300 17 0 chr12 3936826 3936886 -139849569 + L2 LINE L2 3207 3267 -5 551 70 0 23 chr12 3937571 3937657 -139848798 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 * 988 91 28 11 chr12 3937650 3937681 -139848774 + (TTTC)n Simple_repeat Simple_repeat 1 210 0 988 91 28 11 chr12 3937681 3937857 -139848598 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2278 125 0 3 chr12 3937915 3938228 -139848227 - AluSq SINE Alu -1 312 1 212 244 0 0 chr12 3938715 3938760 -139847695 - MIR SINE MIR -77 131 87 397 200 67 0 chr12 3939212 3939287 -139847168 - L2 LINE L2 -43 3270 3191 1287 185 68 16 chr12 3939289 3939597 -139846858 - MER33 DNA MER1_type 0 324 1 812 248 45 33 chr12 3939860 3940102 -139846353 - MIR SINE MIR 0 262 18 213 306 14 14 chr12 3940937 3941009 -139845446 + L2 LINE L2 2990 3061 -211 8388 117 20 21 chr12 3941091 3942393 -139844062 + HSMAR2 DNA Mariner 1 1300 -2 225 273 114 0 chr12 3942888 3942976 -139843479 + L2 LINE L2 3175 3272 0 231 197 145 34 chr12 3943352 3943469 -139842986 - L1ME4a LINE L1 -1 6120 5991 472 264 121 22 chr12 3943699 3943881 -139842574 + L2 LINE L2 3114 3313 0 2497 143 14 32 chr12 3945364 3945796 -139840659 + MSTA LTR MaLR 5 428 0 3287 165 34 0 chr12 3946257 3946814 -139839641 + MLT1A1-int LTR MaLR 1 576 -1159 1621 156 22 0 chr12 3946811 3947086 -139839369 + MLT1A1-int LTR MaLR 1448 1728 -7 * 1314 190 88 51 chr12 3947093 3947242 -139839213 + MLT1A1 LTR MaLR 1 143 -222 2295 97 0 0 chr12 3947242 3947551 -139838904 - AluSc SINE Alu 0 309 1 1314 190 88 51 chr12 3947551 3947753 -139838702 + MLT1A1 LTR MaLR 143 365 0 259 289 0 67 chr12 3948026 3948116 -139838339 + L1ME LINE L1 5562 5645 -476 327 264 71 36 chr12 3948119 3948259 -139838196 - MIR SINE MIR 0 262 118 2238 92 3 0 chr12 3948276 3948568 -139837887 - AluSx SINE Alu -19 293 1 702 273 55 45 chr12 3949265 3949339 -139837116 - LTR16A1 LTR ERVL 0 457 385 2300 39 0 3 chr12 3949339 3949648 -139836807 + AluY SINE Alu 1 308 0 702 273 55 45 chr12 3949648 3949880 -139836575 - LTR16A1 LTR ERVL -72 385 147 188 200 0 0 chr12 3950122 3950152 -139836303 + MIR SINE MIR 121 150 -112 385 261 33 26 chr12 3950687 3950840 -139835615 + L3b LINE CR1 1213 1366 -217 205 258 30 0 chr12 3951037 3951103 -139835352 + T-rich Low_complexity Low_complexity 1 68 0 1936 133 0 10 chr12 3951160 3951453 -139835002 + AluSx SINE Alu 1 290 -22 456 220 229 0 chr12 3951491 3951600 -139834855 - MIR SINE MIR -117 145 12 456 259 0 27 chr12 3952105 3952217 -139834238 - MER63 DNA MER1_type -85 751 17 501 229 66 0 chr12 3952234 3952356 -139834099 - MER21B LTR ERV1 -124 739 610 280 358 131 11 chr12 3952564 3952846 -139833609 + L3b LINE CR1 1218 1533 -50 7900 251 43 16 chr12 3953622 3954679 -139831776 - L1ME1 LINE L1 -106 6129 5102 2129 69 42 3 chr12 3954679 3954967 -139831488 + AluY SINE Alu 1 299 -12 7900 251 43 16 chr12 3954967 3957614 -139828841 - L1ME1 LINE L1 -1133 5102 2282 461 318 15 0 chr12 3957612 3957744 -139828711 - L1ME1 LINE L1 -6094 302 169 * 354 271 194 23 chr12 3957744 3957873 -139828582 + MER96 DNA MER1_type? 1 151 -24 473 274 86 0 chr12 3957874 3957991 -139828464 + MER96 DNA MER1_type? 49 175 0 594 215 14 28 chr12 3957991 3958135 -139828320 - L1ME1 LINE L1 -6220 176 35 225 340 104 0 chr12 3958237 3958343 -139828112 - L2 LINE L2 -1 3271 3155 230 211 53 53 chr12 3958491 3958548 -139827907 - MIR SINE MIR -84 124 68 204 227 68 91 chr12 3958656 3958744 -139827711 + L2 LINE L2 3169 3254 -18 237 65 0 0 chr12 3958746 3958777 -139827678 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 450 259 112 18 chr12 3958908 3959078 -139827377 + MIR SINE MIR 77 262 0 590 237 79 7 chr12 3959973 3960125 -139826330 - MIR3 SINE MIR -3 205 43 659 263 67 10 chr12 3960498 3960692 -139825763 + MIR SINE MIR 46 250 -12 252 271 101 62 chr12 3961427 3961556 -139824899 + MIR SINE MIR 24 157 -105 1717 188 18 3 chr12 3961814 3962150 -139824305 - MER58B DNA MER1_type 0 341 1 2677 138 30 0 chr12 3963827 3964232 -139822223 + L1PA13 LINE L1 1 417 -6370 1956 177 12 0 chr12 3964230 3964575 -139821880 + L1PA13 LINE L1 2276 2624 -4173 * 21204 163 27 9 chr12 3964577 3965527 -139820928 + L1PA13 LINE L1 423 1354 -5460 207 69 0 0 chr12 3965527 3965556 -139820899 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 21204 163 27 9 chr12 3965556 3970872 -139815583 + L1PA13 LINE L1 1354 6814 0 982 244 47 0 chr12 3971645 3971858 -139814597 + MER58A DNA MER1_type 2 224 0 347 311 89 6 chr12 3971904 3972084 -139814371 + MIR SINE MIR 47 241 -21 3579 150 18 8 chr12 3972149 3972777 -139813678 - L1MB3 LINE L1 -4 6179 5546 234 184 0 0 chr12 3972899 3972937 -139813518 + MER20 DNA MER1_type 16 53 -166 2431 136 191 28 chr12 3972960 3973488 -139812967 - LTR18B LTR ERVL 0 614 1 730 188 5 130 chr12 3973488 3973680 -139812775 + MER20 DNA MER1_type 48 215 -4 311 322 133 28 chr12 3974258 3974544 -139811911 - L2 LINE L2 0 3313 2998 1937 118 23 16 chr12 3974978 3975282 -139811173 + AluSg SINE Alu 1 306 -4 235 372 49 26 chr12 3975476 3975702 -139810753 + L3b LINE CR1 1219 1449 -134 248 256 78 22 chr12 3977148 3977238 -139809217 - MIR SINE MIR -16 246 152 634 212 75 126 chr12 3977281 3977536 -139808919 + MIR SINE MIR 17 258 -4 398 225 217 8 chr12 3980651 3980771 -139805684 + L3b LINE CR1 1211 1355 -228 1838 213 5 11 chr12 3981284 3981651 -139804804 - MLT1A1 LTR MaLR 0 365 1 246 62 0 0 chr12 3981932 3981964 -139804491 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 333 220 3 19 chr12 3982344 3982447 -139804008 - LTR16C LTR ERVL -52 438 301 884 169 0 7 chr12 3982568 3982710 -139803745 - MLT1A1 LTR MaLR -224 141 1 650 324 70 4 chr12 3984108 3984352 -139802103 + MIR SINE MIR 2 261 -1 557 312 0 87 chr12 3984805 3985023 -139801432 - MIR SINE MIR -29 233 35 933 219 64 27 chr12 3986080 3986299 -139800156 + MIR SINE MIR 36 262 0 397 196 54 0 chr12 3986429 3986522 -139799933 + MER5A DNA MER1_type 4 102 -87 403 280 15 45 chr12 3986574 3986706 -139799749 + MIR3 SINE MIR 31 158 -50 504 269 33 33 chr12 3987257 3987439 -139799016 + MIR3 SINE MIR 4 185 -23 201 278 28 14 chr12 3988841 3988913 -139797542 - MER5B DNA MER1_type -58 120 48 405 321 33 22 chr12 3989569 3989753 -139796702 - MER5A DNA MER1_type -3 186 1 265 252 222 30 chr12 3990803 3990938 -139795517 + MIR3 SINE MIR 38 198 -10 199 333 88 39 chr12 3991174 3991276 -139795179 + L3b LINE CR1 1477 1583 0 291 114 0 0 chr12 3991692 3991736 -139794719 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 259 24 82 chr12 3992443 3992528 -139793927 + MER5A DNA MER1_type 1 80 -109 * 612 299 70 14 chr12 3992495 3992709 -139793746 - MIR SINE MIR -5 257 32 2151 136 0 0 chr12 3993044 3993339 -139793116 - AluSx SINE Alu -17 295 1 195 286 238 32 chr12 3993374 3993500 -139792955 + L3 LINE CR1 535 686 -891 374 337 132 36 chr12 3993503 3993889 -139792566 + L1 LINE L1 2403 2825 -3321 1435 307 134 46 chr12 3993973 3994795 -139791660 + L3 LINE CR1 680 1573 -4 200 242 210 64 chr12 3995527 3995717 -139790738 - MIR SINE MIR 0 262 42 531 0 0 0 chr12 3997175 3997234 -139789221 + (TG)n Simple_repeat Simple_repeat 2 60 0 737 216 22 74 chr12 3998581 3998812 -139787643 + L2 LINE L2 3083 3301 -12 294 95 0 0 chr12 3998813 3998855 -139787600 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 215 340 117 10 chr12 4000100 4000203 -139786252 + MIR SINE MIR 7 120 -142 209 309 0 60 chr12 4001228 4001312 -139785143 - MIR3 SINE MIR -13 195 117 362 331 66 22 chr12 4003170 4003351 -139783104 + L3b LINE CR1 1185 1373 -210 269 315 46 0 chr12 4003902 4004010 -139782445 + MIR3 SINE MIR 89 201 -7 270 235 66 175 chr12 4004677 4004783 -139781672 - MIR SINE MIR -12 250 171 2417 82 0 7 chr12 4004783 4005077 -139781378 + AluSg SINE Alu 1 292 -18 270 235 66 175 chr12 4005077 4005153 -139781302 - MIR SINE MIR -91 171 88 188 184 20 0 chr12 4005237 4005286 -139781169 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 637 241 60 18 chr12 4006161 4006327 -139780128 - MIR3 SINE MIR -15 193 21 283 289 55 31 chr12 4006764 4006892 -139779563 - L1MC4a LINE L1 -1834 5974 5844 229 263 18 0 chr12 4007012 4007069 -139779386 - L3 LINE CR1 -1 1576 1519 358 172 0 23 chr12 4008176 4008263 -139778192 + CT-rich Low_complexity Low_complexity 3 87 0 294 271 104 21 chr12 4008294 4008390 -139778065 - L2 LINE L2 -1 3271 3168 266 0 0 29 chr12 4008795 4008830 -139777625 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2154 24 8 0 chr12 4008830 4009079 -139777376 - L1PA4 LINE L1 -10 6145 5895 220 365 44 25 chr12 4009853 4010012 -139776443 - MIR SINE MIR -64 198 37 459 264 208 6 chr12 4011002 4011161 -139775294 + MIR SINE MIR 15 205 -57 216 280 0 0 chr12 4011613 4011663 -139774792 + MIR SINE MIR 201 250 -12 198 316 18 0 chr12 4011751 4011808 -139774647 - L3 LINE CR1 -3 1574 1517 1194 241 89 51 chr12 4011995 4012443 -139774012 + L2 LINE L2 1474 1938 -1376 770 259 154 54 chr12 4012447 4013041 -139773414 + L2 LINE L2 2647 3313 0 189 74 0 0 chr12 4013043 4013070 -139773385 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 188 132 0 26 chr12 4013976 4014014 -139772441 + (TA)n Simple_repeat Simple_repeat 2 38 0 180 339 18 0 chr12 4014014 4014070 -139772385 - L3 LINE CR1 -4 1573 1517 775 53 59 6 chr12 4014130 4014299 -139772156 + (TA)n Simple_repeat Simple_repeat 1 178 0 306 104 0 42 chr12 4014311 4014359 -139772096 + L1MC4 LINE L1 6658 6703 -1339 1786 186 7 0 chr12 4015549 4015834 -139770621 + AluJo SINE Alu 1 287 -25 2384 96 0 0 chr12 4016699 4017000 -139769455 - AluSg SINE Alu -9 301 1 267 368 9 9 chr12 4017539 4017645 -139768810 - L2 LINE L2 0 3313 3208 512 286 19 26 chr12 4017663 4017817 -139768638 - L2 LINE L2 -6 3307 3155 192 179 0 0 chr12 4018567 4018606 -139767849 + (TG)n Simple_repeat Simple_repeat 2 40 0 270 321 16 0 chr12 4019067 4019163 -139767292 - MIR SINE MIR -87 121 40 339 301 72 57 chr12 4019210 4019368 -139767087 + L2 LINE L2 3100 3263 -50 186 103 0 0 chr12 4019368 4019397 -139767058 + (CAT)n Simple_repeat Simple_repeat 3 31 0 339 301 72 57 chr12 4019397 4019447 -139767008 + L2 LINE L2 3263 3311 -2 3402 86 55 6 chr12 4020157 4020645 -139765810 - LTR10D LTR ERV1 0 513 2 183 286 29 29 chr12 4020685 4020755 -139765700 - L2 LINE L2 -4 3268 3199 251 294 12 35 chr12 4021503 4021588 -139764867 - MIR SINE MIR -72 190 108 955 216 118 0 chr12 4021792 4022149 -139764306 + L1ME4a LINE L1 5526 5924 -197 1767 155 7 4 chr12 4022282 4022559 -139763896 + AluJo SINE Alu 25 302 -10 303 239 50 13 chr12 4025316 4025422 -139761033 - MIR SINE MIR -71 137 72 425 310 23 47 chr12 4025575 4025707 -139760748 + MIR3 SINE MIR 34 163 -45 2784 102 72 5 chr12 4025707 4026108 -139760347 - MSTA LTR MaLR 0 428 1 425 310 23 47 chr12 4026108 4026146 -139760309 + MIR3 SINE MIR 163 200 -8 185 315 0 19 chr12 4027349 4027403 -139759052 - L3 LINE CR1 -10 1567 1515 344 194 30 119 chr12 4027941 4028075 -139758380 - MIR3 SINE MIR -54 154 33 271 254 0 0 chr12 4028880 4028935 -139757520 + (TG)n Simple_repeat Simple_repeat 1 55 0 264 149 0 0 chr12 4029683 4029730 -139756725 + (TCC)n Simple_repeat Simple_repeat 1 47 0 917 131 12 0 chr12 4029810 4030064 -139756391 + GA-rich Low_complexity Low_complexity 1 257 0 504 287 14 14 chr12 4030080 4030223 -139756232 - MIR3 SINE MIR -63 145 3 348 236 0 0 chr12 4030789 4030861 -139755594 - L2 LINE L2 -39 3233 3162 457 179 0 13 chr12 4031472 4031550 -139754905 - L2 LINE L2 -43 3270 3194 224 379 0 0 chr12 4031614 4031680 -139754775 + L2 LINE L2 3121 3186 -86 189 282 128 81 chr12 4033015 4033164 -139753291 - MER5B DNA MER1_type -6 172 17 581 261 147 0 chr12 4033184 4033341 -139753114 - MER5A DNA MER1_type -1 188 9 472 224 7 92 chr12 4033750 4033902 -139752553 + L3b LINE CR1 1210 1348 -235 422 324 7 21 chr12 4034764 4034909 -139751546 - MIR3 SINE MIR -21 187 45 195 129 0 0 chr12 4035408 4035439 -139751016 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 309 25 0 chr12 4035670 4035751 -139750704 - MIR SINE MIR -86 122 40 2093 103 0 0 chr12 4036383 4036655 -139749800 - AluSg1 SINE Alu 0 309 38 181 214 24 0 chr12 4037027 4037069 -139749386 + L2 LINE L2 2949 2991 -322 187 229 0 0 chr12 4037468 4037503 -139748952 + MIR SINE MIR 111 145 -63 275 270 79 11 chr12 4039118 4039207 -139747248 - L3 LINE CR1 -113 1464 1370 1214 226 55 0 chr12 4039567 4039859 -139746596 + MER46C DNA MER2_type 8 315 -23 180 111 0 0 chr12 4039866 4039893 -139746562 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 212 303 50 40 chr12 4040583 4040682 -139745773 + MIR SINE MIR 64 163 -99 192 288 17 17 chr12 4041747 4041806 -139744649 - L2 LINE L2 0 3313 3255 189 229 167 111 chr12 4041915 4042059 -139744396 + MIR SINE MIR 65 216 -46 309 348 44 40 chr12 4042173 4042400 -139744055 - L2 LINE L2 -17 3255 3028 204 240 0 0 chr12 4043717 4043767 -139742688 + T-rich Low_complexity Low_complexity 2 51 0 228 292 73 21 chr12 4044357 4044453 -139742002 + MIR3 SINE MIR 81 181 -27 317 125 18 0 chr12 4044628 4044684 -139741771 + (TG)n Simple_repeat Simple_repeat 2 58 0 1478 186 78 0 chr12 4045058 4045164 -139741291 + AluJo SINE Alu 1 97 -215 468 0 0 0 chr12 4045164 4045216 -139741239 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 1478 186 78 0 chr12 4045216 4045378 -139741077 + AluJo SINE Alu 97 290 -22 447 293 75 28 chr12 4045504 4045716 -139740739 + MIR SINE MIR 41 262 0 3029 253 40 32 chr12 4046680 4046821 -139739634 - L1M4c LINE L1 -3649 2733 2595 2393 86 0 7 chr12 4046821 4047123 -139739332 - AluSq SINE Alu -8 305 6 3029 253 40 32 chr12 4047123 4048679 -139737776 - L1M4c LINE L1 -3787 2595 916 213 250 211 0 chr12 4050146 4050222 -139736233 + L2 LINE L2 3148 3239 -33 245 267 102 51 chr12 4050688 4050864 -139735591 + MIR SINE MIR 76 260 -2 809 104 0 14 chr12 4051274 4051418 -139735037 + L1MB4 LINE L1 6039 6180 0 324 340 61 0 chr12 4052123 4052270 -139734185 + L3 LINE CR1 1287 1442 -135 211 269 0 30 chr12 4052484 4052551 -139733904 + CT-rich Low_complexity Low_complexity 3 67 0 257 313 0 0 chr12 4052814 4052878 -139733577 + C-rich Low_complexity Low_complexity 2 65 0 202 300 11 33 chr12 4053187 4053277 -139733178 - MIR SINE MIR -59 149 62 217 200 0 0 chr12 4053724 4053769 -139732686 + MER5B DNA MER1_type 5 49 -129 823 201 74 0 chr12 4053799 4053948 -139732507 + FRAM SINE Alu 1 152 -24 279 0 0 0 chr12 4054389 4054420 -139732035 + (CA)n Simple_repeat Simple_repeat 2 32 0 1826 147 33 52 chr12 4054659 4055027 -139731428 + MER46B DNA MER2_type 1 236 0 258 300 18 36 chr12 4056762 4056872 -139729583 - MIR3 SINE MIR 0 208 101 458 311 34 28 chr12 4056940 4057117 -139729338 - L2 LINE L2 0 3272 3095 639 252 24 16 chr12 4057275 4057466 -139728989 - MIR SINE MIR -51 157 5 393 270 38 44 chr12 4057900 4058059 -139728396 - MIR SINE MIR -71 191 34 436 327 116 33 chr12 4058747 4059273 -139727182 + L2 LINE L2 2709 3271 -1 350 293 86 9 chr12 4060618 4060734 -139725721 - MIR SINE MIR -113 149 25 180 111 0 0 chr12 4064309 4064336 -139722119 + (CA)n Simple_repeat Simple_repeat 1 27 0 190 313 71 18 chr12 4065080 4065192 -139721263 - L3b LINE CR1 -126 1457 1340 1502 160 91 29 chr12 4066381 4066656 -139719799 + AluJo SINE Alu 12 303 -9 303 309 70 91 chr12 4067009 4067239 -139719216 + L2 LINE L2 3030 3254 -18 394 301 160 14 chr12 4067442 4067661 -139718794 + L3 LINE CR1 1213 1463 -114 3515 143 23 77 chr12 4068062 4068274 -139718181 + L1MA9 LINE L1 5571 5793 -519 276 30 0 0 chr12 4068274 4068307 -139718148 + (TG)n Simple_repeat Simple_repeat 1 33 0 3515 143 23 77 chr12 4068307 4068878 -139717577 + L1MA9 LINE L1 5793 6312 0 658 256 117 9 chr12 4069150 4069380 -139717075 - MIR SINE MIR -6 256 2 545 243 75 17 chr12 4069380 4069553 -139716902 + MER5A DNA MER1_type 3 185 -4 1063 341 68 35 chr12 4069618 4070575 -139715880 - L2 LINE L2 -480 2834 1846 870 323 84 36 chr12 4070572 4071374 -139715081 - L2 LINE L2 -4 3309 2462 * 23 0 0 0 chr12 4071895 4071918 -139714537 + AT_rich Low_complexity Low_complexity 1 23 0 786 268 102 27 chr12 4072059 4072836 -139713619 + L1MDa LINE L1 1030 1934 -4448 369 333 32 38 chr12 4072853 4073091 -139713364 + MIR SINE MIR 20 256 -6 2354 89 7 0 chr12 4073307 4073598 -139712857 + AluSc SINE Alu 1 293 -16 227 297 10 69 chr12 4074050 4074151 -139712304 + MIR SINE MIR 20 114 -148 603 217 31 37 chr12 4074381 4074542 -139711913 + MIR SINE MIR 10 169 -93 227 203 57 51 chr12 4075150 4075268 -139711187 - MIR SINE MIR -43 219 102 320 247 37 0 chr12 4077239 4077320 -139709135 + MIR SINE MIR 83 166 -96 355 301 101 7 chr12 4078105 4078283 -139708172 + MIR SINE MIR 19 214 -48 529 110 11 0 chr12 4078530 4078621 -139707834 + L1MB3 LINE L1 6088 6179 -4 2287 119 0 19 chr12 4079145 4079510 -139706945 + AluSp SINE Alu 1 313 0 1119 130 22 11 chr12 4079836 4080021 -139706434 + MLT1A2 LTR MaLR 1 187 -187 206 129 14 57 chr12 4080022 4080092 -139706363 + CT-rich Low_complexity Low_complexity 1 67 0 700 208 126 1 chr12 4080094 4080267 -139706188 + MLT1B LTR MaLR 163 382 -8 700 232 29 77 chr12 4080779 4080986 -139705469 + MIR SINE MIR 18 214 -48 813 275 9 13 chr12 4082630 4082859 -139703596 + MIR SINE MIR 2 229 -33 392 243 29 0 chr12 4082887 4082990 -139703465 - MER94 DNA DNA -17 117 12 189 74 0 0 chr12 4083418 4083445 -139703010 + (TTG)n Simple_repeat Simple_repeat 2 28 0 428 0 19 0 chr12 4083449 4083501 -139702954 + (TG)n Simple_repeat Simple_repeat 2 54 0 2264 120 7 0 chr12 4083579 4083888 -139702567 - AluSq SINE Alu -2 311 1 256 313 120 0 chr12 4083959 4084113 -139702342 + MIR SINE MIR 21 197 -11 708 246 33 6 chr12 4084724 4084907 -139701548 + MIR SINE MIR 48 235 -27 180 215 183 21 chr12 4085740 4085833 -139700622 - L3 LINE CR1 -190 1387 1280 537 110 0 0 chr12 4085964 4086055 -139700400 + (CA)n Simple_repeat Simple_repeat 1 91 0 546 154 0 45 chr12 4086300 4086410 -139700045 + MIR3 SINE MIR 74 179 -29 29 0 0 0 chr12 4086615 4086644 -139699811 + GC_rich Low_complexity Low_complexity 1 29 0 351 289 111 32 chr12 4087379 4087569 -139698886 + L2 LINE L2 2864 3068 -204 358 206 10 69 chr12 4087946 4088048 -139698407 - MIR3 SINE MIR -10 198 103 602 285 94 8 chr12 4088175 4088410 -139698045 + MIR SINE MIR 7 261 -1 201 275 0 29 chr12 4088853 4088922 -139697533 - MIR SINE MIR -119 143 77 233 233 0 0 chr12 4089060 4089103 -139697352 + MER45A DNA AcHobo 1 43 -135 1275 81 0 71 chr12 4089104 4089302 -139697153 - MER1B DNA MER1_type 0 339 156 258 141 14 141 chr12 4089278 4089349 -139697106 - MER1B DNA MER1_type -275 62 1 * 563 263 8 8 chr12 4089354 4089487 -139696968 + MER45A DNA AcHobo 43 175 -3 218 295 114 0 chr12 4091467 4091572 -139694883 - MIR3 SINE MIR -22 186 70 2751 95 28 8 chr12 4092216 4092573 -139693882 - THE1B LTR MaLR 0 364 1 565 310 0 11 chr12 4092891 4093065 -139693390 + MIR SINE MIR 72 243 -19 206 170 0 21 chr12 4093072 4093119 -139693336 + GA-rich Low_complexity Low_complexity 4 49 0 408 111 0 123 chr12 4093143 4093224 -139693231 + AluJo SINE Alu 81 151 -161 2279 113 147 26 chr12 4093224 4093391 -139693064 + MSTA LTR MaLR 1 147 -281 2722 87 20 0 chr12 4093391 4093736 -139692719 + THE1A LTR MaLR 1 352 -3 2279 113 147 26 chr12 4093736 4093950 -139692505 + MSTA LTR MaLR 147 428 0 582 148 0 0 chr12 4093961 4094049 -139692406 + AluJ/FRAM SINE Alu 220 307 -5 329 209 14 0 chr12 4094049 4094189 -139692266 + GA-rich Low_complexity Low_complexity 1 142 0 323 314 71 40 chr12 4094590 4094816 -139691639 + L1ME1 LINE L1 11 243 -6616 262 289 37 23 chr12 4095197 4095396 -139691059 + L1M4b LINE L1 1035 1345 -5602 2392 97 0 0 chr12 4095408 4095707 -139690748 + AluSg SINE Alu 1 299 -11 2178 123 0 16 chr12 4095710 4096026 -139690429 + AluY SINE Alu 1 311 0 1172 252 62 18 chr12 4096039 4096440 -139690015 + L1M4b LINE L1 1209 1627 -5232 1865 256 46 49 chr12 4096447 4097291 -139689164 + L1M4b LINE L1 2273 3114 -4024 2217 238 30 30 chr12 4097363 4097969 -139688486 + L1ME1 LINE L1 394 999 -5439 339 267 57 0 chr12 4097975 4098080 -139688375 + L1MCb LINE L1 1425 1535 -5324 279 189 0 0 chr12 4098082 4098135 -139688320 + L1ME1 LINE L1 1008 1060 -5378 2045 178 37 32 chr12 4098136 4098682 -139687773 - MLT2A2 LTR ERVL 0 554 1 3365 189 53 22 chr12 4098686 4098766 -139687689 + L1ME1 LINE L1 1064 1140 -5787 2459 67 0 0 chr12 4098766 4099063 -139687392 + AluY SINE Alu 1 297 -14 3365 189 53 22 chr12 4099063 4099966 -139686489 + L1ME1 LINE L1 1140 2075 -4852 316 75 0 0 chr12 4099966 4100006 -139686449 - MLT2B1 LTR ERVL -2 518 479 396 0 0 0 chr12 4100006 4100050 -139686405 + (CA)n Simple_repeat Simple_repeat 2 45 0 377 265 0 24 chr12 4100059 4100225 -139686230 + CT-rich Low_complexity Low_complexity 1 162 0 1892 208 88 14 chr12 4100318 4100736 -139685719 - MLT2B1 LTR ERVL -71 449 1 1777 198 275 15 chr12 4100747 4100946 -139685509 + L1ME1 LINE L1 2099 2245 -4712 2622 55 0 0 chr12 4100946 4101256 -139685199 - AluY SINE Alu -1 310 1 1777 198 275 15 chr12 4101256 4101743 -139684712 + L1ME1 LINE L1 2245 2964 -3993 1348 161 5 0 chr12 4101793 4102004 -139684451 + AluSp SINE Alu 1 212 -101 372 109 0 0 chr12 4102004 4102059 -139684396 + AluSp SINE Alu 78 132 -171 2418 80 3 0 chr12 4102061 4102360 -139684095 + AluSp SINE Alu 1 300 -13 3201 210 50 21 chr12 4102363 4103287 -139683168 + L1ME1 LINE L1 2968 3919 -3038 3109 245 41 28 chr12 4103290 4104196 -139682259 + L1ME1 LINE L1 5302 6195 -950 2483 68 0 0 chr12 4104196 4104488 -139681967 + AluY SINE Alu 1 292 -19 3109 245 41 28 chr12 4104488 4104936 -139681519 + L1ME1 LINE L1 6195 6636 -509 2302 71 3 17 chr12 4104936 4105233 -139681222 + AluY SINE Alu 1 293 -18 3109 245 41 28 chr12 4105233 4105525 -139680930 + L1ME1 LINE L1 6636 7145 0 472 267 103 51 chr12 4106410 4106702 -139679753 - L2 LINE L2 -2 3311 3005 2296 66 10 30 chr12 4107851 4108155 -139678300 + AluY SINE Alu 1 298 -13 1969 112 52 75 chr12 4108370 4108585 -139677870 + THE1C LTR MaLR 1 205 -170 207 0 0 0 chr12 4108585 4108608 -139677847 + (TC)n Simple_repeat Simple_repeat 1 23 0 1969 112 52 75 chr12 4108608 4108776 -139677679 + THE1C LTR MaLR 205 375 0 1110 268 224 30 chr12 4109497 4110507 -139675948 - L2 LINE L2 -38 3275 2075 339 343 62 19 chr12 4110520 4110730 -139675725 + L2 LINE L2 2661 2879 -435 211 363 97 8 chr12 4110708 4110832 -139675623 + L2 LINE L2 3089 3223 -49 * 373 130 0 26 chr12 4110851 4110928 -139675527 + (GGAA)n Simple_repeat Simple_repeat 4 78 0 25 0 0 0 chr12 4112053 4112078 -139674377 + AT_rich Low_complexity Low_complexity 1 25 0 1505 209 20 29 chr12 4112121 4112470 -139673985 - L1ME2 LINE L1 -28 6136 5791 3090 213 83 18 chr12 4112476 4113236 -139673219 - L1ME1 LINE L1 -35 6200 5392 848 60 0 0 chr12 4113255 4113355 -139673100 + AluSg SINE Alu 1 100 -210 2247 112 0 3 chr12 4113403 4113706 -139672749 + AluSg SINE Alu 1 302 -8 7385 216 93 89 chr12 4113706 4114461 -139671994 - L1ME1 LINE L1 -846 5369 4619 1109 184 44 0 chr12 4114461 4114667 -139671788 - AluJb SINE Alu -14 298 84 7385 216 93 89 chr12 4114667 4115348 -139671107 - L1ME1 LINE L1 -1596 4619 3943 2586 113 88 10 chr12 4115348 4115745 -139670710 + MSTA LTR MaLR 1 428 0 7385 216 93 89 chr12 4115745 4115956 -139670499 - L1ME1 LINE L1 -2272 3943 3734 2262 103 3 19 chr12 4115956 4116266 -139670189 - AluSx SINE Alu -7 305 1 7385 216 93 89 chr12 4116266 4116703 -139669752 - L1ME1 LINE L1 -2481 3734 3300 2259 99 6 13 chr12 4116703 4117015 -139669440 - AluSq SINE Alu -3 310 1 7385 216 93 89 chr12 4117015 4117099 -139669356 - L1ME1 LINE L1 -2915 3300 3218 666 216 0 43 chr12 4117099 4117260 -139669195 - FLAM_A SINE Alu 0 133 1 7385 216 93 89 chr12 4117260 4118443 -139668012 - L1ME1 LINE L1 -2997 3218 1853 2463 72 7 3 chr12 4118443 4118750 -139667705 - AluY SINE Alu -3 308 1 7385 216 93 89 chr12 4118750 4118966 -139667489 - L1ME1 LINE L1 -4362 1853 1639 4976 139 57 4 chr12 4118958 4119987 -139666468 - L1MB1 LINE L1 0 6168 5086 * 9398 74 21 4 chr12 4119988 4121247 -139665208 - L1PA7 LINE L1 -897 5249 3969 7452 49 2 24 chr12 4121247 4122161 -139664294 + L1PA7 LINE L1 5260 6154 0 3745 188 57 6 chr12 4122161 4122954 -139663501 - L1MB1 LINE L1 -1054 5092 4260 510 301 0 7 chr12 4123301 4123444 -139663011 - L1ME1 LINE L1 -6120 276 135 1746 141 44 0 chr12 4123539 4123809 -139662646 - MSTB LTR MaLR -144 282 1 210 220 160 0 chr12 4123813 4123863 -139662592 - MIR SINE MIR -200 62 5 736 238 114 5 chr12 4125001 4125203 -139661252 + LTR50 LTR ERVL 1 224 -571 570 257 153 8 chr12 4125356 4125605 -139660850 + LTR50 LTR ERVL 503 787 -8 347 196 244 11 chr12 4125725 4125854 -139660601 + MIR SINE MIR 2 159 -49 413 197 0 0 chr12 4125856 4125932 -139660523 + MER53 DNA DNA 33 108 -81 2192 82 0 4 chr12 4126000 4126279 -139660176 + AluSx SINE Alu 1 278 -34 192 97 0 0 chr12 4126890 4126921 -139659534 + (CA)n Simple_repeat Simple_repeat 2 32 0 468 252 98 28 chr12 4128168 4128311 -139658144 - MIR SINE MIR -21 241 89 237 250 0 18 chr12 4128314 4128370 -139658085 - tRNA-Gln-CAG tRNA tRNA -15 60 6 2512 81 0 0 chr12 4128436 4128746 -139657709 + AluY SINE Alu 1 310 -1 214 231 0 0 chr12 4130056 4130095 -139656360 - L3 LINE CR1 -11 1566 1528 258 290 0 0 chr12 4130186 4130248 -139656207 - L2 LINE L2 -2 3311 3250 674 310 49 13 chr12 4130433 4130659 -139655796 - L3b LINE CR1 -123 1460 1227 1863 227 68 36 chr12 4131087 4131615 -139654840 + MER74B LTR ERVL 56 600 -22 826 190 231 93 chr12 4131622 4131943 -139654512 - MLT1A1 LTR MaLR 0 365 1 442 206 19 0 chr12 4132740 4132834 -139653621 + MLT1A2 LTR MaLR 1 103 -262 * 655 152 62 0 chr12 4132831 4132943 -139653512 + MLT1A2 LTR MaLR 256 374 0 376 314 16 0 chr12 4133195 4133319 -139653136 + L3 LINE CR1 691 816 -761 476 247 88 0 chr12 4133379 4133549 -139652906 - L1ME4a LINE L1 -215 5906 5722 368 338 186 18 chr12 4133591 4134032 -139652423 + L3 LINE CR1 802 1316 -261 315 313 35 76 chr12 4134198 4134396 -139652059 + L2 LINE L2 2085 2274 -1040 412 303 123 59 chr12 4134463 4134885 -139651570 - MLT1K LTR MaLR -3 585 137 313 315 49 120 chr12 4135248 4135680 -139650775 + L2 LINE L2 2862 3262 -10 330 298 172 40 chr12 4136421 4136619 -139649836 - MIR SINE MIR -18 244 21 311 306 144 39 chr12 4137411 4137640 -139648815 + L3b LINE CR1 1304 1556 -27 2501 61 7 3 chr12 4138071 4138381 -139648074 + AluY SINE Alu 1 311 0 238 311 185 0 chr12 4138385 4138520 -139647935 + L3 LINE CR1 1345 1504 -73 276 296 144 24 chr12 4138558 4138683 -139647772 + L2 LINE L2 3133 3272 0 2437 226 42 4 chr12 4138742 4139295 -139647160 + MER90 LTR ERV1 1 574 -1 1017 223 34 13 chr12 4139426 4139659 -139646796 - MIR SINE MIR -2 260 23 526 290 22 65 chr12 4140030 4140261 -139646194 + L2 LINE L2 2976 3196 -76 265 286 29 14 chr12 4140569 4140639 -139645816 - MIR SINE MIR -104 104 34 2187 129 0 10 chr12 4143961 4144271 -139642184 + AluSx SINE Alu 1 307 -5 591 111 0 0 chr12 4144271 4144352 -139642103 + (GGAA)n Simple_repeat Simple_repeat 1 81 0 628 119 23 40 chr12 4144352 4144528 -139641927 + GA-rich Low_complexity Low_complexity 3 175 0 267 321 19 38 chr12 4144560 4144666 -139641789 - L3 LINE CR1 -52 1525 1422 210 315 71 16 chr12 4146131 4146258 -139640197 + L3b LINE CR1 1350 1483 -100 2392 88 0 7 chr12 4146452 4146758 -139639697 - AluSx SINE Alu -8 304 1 201 324 44 0 chr12 4148297 4148365 -139638090 - L3 LINE CR1 -19 1558 1488 21 36 0 0 chr12 4148815 4148843 -139637612 + AT_rich Low_complexity Low_complexity 1 28 0 705 298 187 39 chr12 4148880 4149464 -139636991 - L3 LINE CR1 -114 1463 794 669 294 216 13 chr12 4149878 4150266 -139636189 - L3 LINE CR1 -787 790 324 1368 133 0 5 chr12 4150375 4150563 -139635892 + AluSg/x SINE Alu 104 290 -22 2392 82 0 0 chr12 4150563 4150857 -139635598 + AluY SINE Alu 1 294 -17 360 302 121 13 chr12 4151475 4151624 -139634831 - MER5A DNA MER1_type -24 165 1 918 321 181 28 chr12 4151651 4153007 -139633448 + L2 LINE L2 1083 2645 -669 902 189 19 53 chr12 4153023 4153229 -139633226 - MER20 DNA MER1_type -20 199 1 509 311 28 6 chr12 4153229 4153406 -139633049 + L2 LINE L2 2660 2840 -474 193 364 116 23 chr12 4153462 4153635 -139632820 + L2 LINE L2 2788 2976 -338 300 300 12 0 chr12 4153796 4153876 -139632579 + L2 LINE L2 3228 3308 -5 255 254 61 50 chr12 4154636 4154817 -139631638 + L1MC5 LINE L1 7732 7914 -47 2667 17 0 3 chr12 4155970 4156271 -139630184 + AluY SINE Alu 1 300 -11 251 269 17 34 chr12 4157006 4157125 -139629330 - L1MC4a LINE L1 -1874 5934 5818 339 215 0 0 chr12 4157125 4157190 -139629265 + L2 LINE L2 3249 3313 0 838 287 108 25 chr12 4157191 4157287 -139629168 - L1MC4a LINE L1 -1986 5822 5735 2175 111 3 3 chr12 4157287 4157585 -139628870 + AluSx SINE Alu 1 298 -14 838 287 108 25 chr12 4157585 4157885 -139628570 - L1MC4a LINE L1 -2073 5735 5393 2177 77 3 24 chr12 4159384 4159682 -139626773 - AluY SINE Alu -19 292 1 2203 89 13 7 chr12 4161920 4162224 -139624231 + AluSg SINE Alu 1 306 -4 549 327 80 9 chr12 4163012 4163238 -139623217 + MIR SINE MIR 5 246 -16 811 240 144 0 chr12 4164300 4164529 -139621926 - MIR SINE MIR 0 262 1 293 251 18 104 chr12 4165094 4165257 -139621198 + MIR SINE MIR 79 227 -35 1484 194 17 17 chr12 4166971 4167260 -139619195 + AluJo SINE Alu 1 289 -23 2484 261 46 24 chr12 4167280 4168004 -139618451 + L1M4b LINE L1 69 816 -6043 2177 134 0 3 chr12 4168004 4168318 -139618137 + AluSq SINE Alu 1 313 0 2484 261 46 24 chr12 4168318 4168444 -139618011 + L1M4b LINE L1 816 938 -5921 227 143 0 127 chr12 4168677 4168740 -139617715 + L1M4b LINE L1 1160 1214 -5645 1883 223 44 77 chr12 4168953 4170154 -139616301 + L1M4b LINE L1 1205 2329 -4630 4209 164 11 9 chr12 4170279 4171024 -139615431 + L1MA4 LINE L1 1241 1986 -4579 3566 209 46 30 chr12 4171051 4171701 -139614754 + L1MA4 LINE L1 3344 3982 -3583 183 42 0 0 chr12 4171701 4171725 -139614730 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3566 209 46 30 chr12 4171725 4172395 -139614060 + L1MA4 LINE L1 3982 4694 -2871 181 0 0 65 chr12 4172806 4172837 -139613618 + (CCG)n Simple_repeat Simple_repeat 3 31 0 9749 148 25 39 chr12 4179930 4180132 -139606323 + L1MA4 LINE L1 4668 4871 -2848 2511 75 0 3 chr12 4180132 4180440 -139606015 + AluY SINE Alu 5 311 0 9749 148 25 39 chr12 4180440 4180460 -139605995 + L1MA4 LINE L1 4871 4890 -2829 1645 193 30 3 chr12 4180460 4180760 -139605695 + AluJo SINE Alu 5 312 0 9749 148 25 39 chr12 4180760 4183612 -139602843 + L1MA4 LINE L1 4890 7707 -12 30 45 0 0 chr12 4183613 4183657 -139602798 + AT_rich Low_complexity Low_complexity 1 44 0 4661 154 35 5 chr12 4183957 4184784 -139601671 + Tigger4(Zombi) DNA MER2_type 1 852 -1879 37200 74 8 9 chr12 4184795 4190932 -139595523 + L1PA6 LINE L1 11 6143 -11 9001 127 29 14 chr12 4190940 4192457 -139593998 + Tigger4(Zombi) DNA MER2_type 835 2373 -358 2181 116 0 26 chr12 4192461 4192771 -139593684 + AluSx SINE Alu 1 302 -10 602 188 23 0 chr12 4192771 4192899 -139593556 + Tigger4(Zombi) DNA MER2_type 2542 2672 -59 936 228 46 49 chr12 4192904 4192937 -139593518 + L1MEc LINE L1 2181 2213 -4002 2104 105 14 3 chr12 4192937 4193231 -139593224 + AluSg SINE Alu 1 297 -13 936 228 46 49 chr12 4193231 4193577 -139592878 + L1MEc LINE L1 2213 2526 -3689 * 1659 240 82 99 chr12 4193576 4194307 -139592148 + MLT1A1-int LTR MaLR 410 1121 -250 1503 150 13 86 chr12 4194307 4194621 -139591834 - AluJo SINE Alu -11 301 11 1659 240 82 99 chr12 4194621 4194864 -139591591 + MLT1A1-int LTR MaLR 1121 1367 -4 623 212 36 7 chr12 4194875 4195012 -139591443 + MLT1A1 LTR MaLR 1 141 -224 1076 204 58 10 chr12 4195017 4195396 -139591059 - L1MC/D LINE L1 -743 5472 5150 2197 82 0 4 chr12 4195396 4195675 -139590780 + AluY SINE Alu 1 278 -33 345 104 68 0 chr12 4195691 4195774 -139590681 + L1M LINE L1 5337 5427 -742 1676 155 6 79 chr12 4195799 4196115 -139590340 + AluJo SINE Alu 1 293 -19 265 225 0 0 chr12 4196125 4196205 -139590250 - L1MC/D LINE L1 -1086 5129 5050 28 71 0 0 chr12 4196209 4196265 -139590190 + AT_rich Low_complexity Low_complexity 1 56 0 2498 232 125 6 chr12 4196265 4197148 -139589307 - L1MC/D LINE L1 -1159 5056 4069 1946 233 67 42 chr12 4197148 4197727 -139588728 - MER77 LTR ERV1 0 605 12 5019 250 60 9 chr12 4197735 4199662 -139586793 - L1MEc LINE L1 -2139 4076 2084 662 279 77 0 chr12 4199798 4200045 -139586410 + L2 LINE L2 1897 2162 -1152 1866 143 4 0 chr12 4201832 4202098 -139584357 + AluSx SINE Alu 1 267 -45 457 261 232 44 chr12 4202098 4202481 -139583974 + L2 LINE L2 2213 2667 -647 1808 196 70 21 chr12 4202482 4202956 -139583499 - MLT1D LTR MaLR -8 497 1 891 301 117 24 chr12 4202975 4203560 -139582895 + L2 LINE L2 2670 3295 -18 1156 210 0 13 chr12 4203577 4203806 -139582649 - Tigger7 DNA MER2_type -2240 247 22 567 242 8 8 chr12 4204272 4204400 -139582055 - L2 LINE L2 -2 3311 3184 1563 168 90 9 chr12 4204945 4205267 -139581188 + MER7A DNA MER2_type 1 346 0 3604 162 56 9 chr12 4205421 4206095 -139580360 + MER39 LTR ERV1 1 706 -1 854 115 0 0 chr12 4206470 4206600 -139579855 + AluSg/x SINE Alu 174 303 -9 309 248 239 0 chr12 4207358 4207471 -139578984 + MIR SINE MIR 120 259 -3 2098 117 0 7 chr12 4207915 4208214 -139578241 - AluSx SINE Alu -15 297 1 207 178 44 0 chr12 4208519 4208564 -139577891 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 238 246 172 30 chr12 4208823 4209026 -139577429 - L1 LINE L1 -1710 4436 4205 2214 112 3 0 chr12 4209160 4209456 -139576999 - AluSx SINE Alu -12 300 4 346 311 35 44 chr12 4209487 4209853 -139576602 - L1 LINE L1 -2153 3993 3631 251 209 104 15 chr12 4210323 4210390 -139576065 + Charlie8 DNA MER1_type 183 255 -2162 511 188 21 0 chr12 4210599 4210695 -139575760 - Tigger7 DNA MER2_type -2 2489 2392 * 901 244 81 8 chr12 4210694 4210733 -139575722 - Tigger7 DNA MER2_type -2221 266 231 14796 122 19 30 chr12 4210733 4210953 -139575502 - Tigger1 DNA MER2_type 0 2418 2197 2337 96 0 0 chr12 4210953 4211245 -139575210 + AluSx SINE Alu 1 292 -20 14796 122 19 30 chr12 4211245 4212603 -139573852 - Tigger1 DNA MER2_type -221 2197 871 2280 103 0 10 chr12 4212603 4212913 -139573542 - AluY SINE Alu -3 308 2 14796 122 19 30 chr12 4212913 4213776 -139572679 - Tigger1 DNA MER2_type -1547 871 1 901 244 81 8 chr12 4213776 4213982 -139572473 - Tigger7 DNA MER2_type -2256 231 3 1693 156 69 39 chr12 4213990 4214323 -139572132 - MER2 DNA MER2_type -1 343 1 884 255 91 98 chr12 4215818 4216245 -139570210 - L2 LINE L2 0 3313 2890 297 0 0 0 chr12 4216246 4216279 -139570176 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 303 104 0 0 chr12 4216278 4216326 -139570129 + (TG)n Simple_repeat Simple_repeat 2 49 0 545 288 56 10 chr12 4216441 4216654 -139569801 - MIR SINE MIR -22 240 19 302 139 58 105 chr12 4217137 4217223 -139569232 + L1MB8 LINE L1 6095 6176 -2 979 263 3 24 chr12 4217494 4217791 -139568664 - AluY SINE Alu -9 302 12 226 333 12 0 chr12 4217885 4217969 -139568486 - AluSg/x SINE Alu -15 287 203 453 220 0 0 chr12 4218192 4218310 -139568145 + L1MEc LINE L1 996 1113 -5283 2297 91 0 29 chr12 4218316 4218624 -139567831 + AluY SINE Alu 4 302 -9 381 207 12 0 chr12 4218625 4218707 -139567748 + L1MB5 LINE L1 6082 6164 -10 717 170 15 0 chr12 4218753 4218888 -139567567 + L1PA16 LINE L1 6025 6161 -5 25 0 0 0 chr12 4218888 4218913 -139567542 + AT_rich Low_complexity Low_complexity 1 25 0 2428 58 0 19 chr12 4220057 4220365 -139566090 - AluY SINE Alu -9 302 1 646 94 0 0 chr12 4220448 4220533 -139565922 - AluSg/x SINE Alu -25 284 200 531 271 39 13 chr12 4220644 4220799 -139565656 + MIR3 SINE MIR 41 199 -9 228 339 34 0 chr12 4220864 4220923 -139565532 - L2 LINE L2 -72 3200 3140 189 231 0 0 chr12 4221779 4221818 -139564637 + L3b LINE CR1 1539 1577 -6 230 91 68 0 chr12 4221938 4221982 -139564473 + A-rich Low_complexity Low_complexity 2 48 0 635 128 220 0 chr12 4222351 4222460 -139563995 - FLAM_C SINE Alu 0 133 1 1517 166 31 0 chr12 4222631 4222913 -139563542 - AluJo SINE Alu 0 312 35 1044 314 194 16 chr12 4222913 4223613 -139562842 - L3 LINE CR1 -11 1566 742 686 290 21 29 chr12 4223612 4223850 -139562605 + MIR SINE MIR 27 262 0 * 810 300 67 122 chr12 4223865 4224622 -139561833 - L3 LINE CR1 -835 742 27 502 299 19 7 chr12 4224643 4224797 -139561658 + MIR3 SINE MIR 49 204 -4 298 85 0 51 chr12 4225235 4225294 -139561161 - Alu SINE Alu 0 301 246 2246 99 0 0 chr12 4225326 4225628 -139560827 - AluY SINE Alu -9 302 1 281 304 32 70 chr12 4226564 4226662 -139559793 - L2 LINE L2 0 3313 3213 2267 89 10 23 chr12 4226662 4226966 -139559489 + AluY SINE Alu 1 300 -11 243 0 0 0 chr12 4226966 4226993 -139559462 + (TA)n Simple_repeat Simple_repeat 1 27 0 408 20 0 0 chr12 4226992 4227041 -139559414 + (GA)n Simple_repeat Simple_repeat 2 50 0 281 304 32 70 chr12 4226993 4227099 -139559356 - L2 LINE L2 -98 3215 3162 192 314 35 0 chr12 4228001 4228087 -139558368 - MIR SINE MIR -102 160 72 182 283 92 106 chr12 4228721 4229041 -139557414 + L2 LINE L2 1798 2121 -1193 549 55 0 0 chr12 4229041 4229114 -139557341 + (TC)n Simple_repeat Simple_repeat 1 73 0 182 283 92 106 chr12 4229114 4229284 -139557171 + L2 LINE L2 2121 2284 -1030 1750 176 3 3 chr12 4229284 4229603 -139556852 - AluJo SINE Alu 0 319 1 182 283 92 106 chr12 4229603 4229641 -139556814 + L2 LINE L2 2284 2321 -993 3320 275 87 38 chr12 4229785 4231563 -139554892 + L2 LINE L2 1455 3313 0 182 393 0 0 chr12 4231703 4231759 -139554696 - MIR3 SINE MIR -138 70 15 278 208 78 0 chr12 4232198 4232275 -139554180 - MER102b DNA MER1_type -8 333 251 367 319 22 0 chr12 4232336 4232474 -139553981 - MER102b DNA MER1_type -184 157 17 289 307 146 15 chr12 4232516 4232653 -139553802 + MIR SINE MIR 37 191 -71 190 73 49 24 chr12 4232888 4232929 -139553526 + T-rich Low_complexity Low_complexity 2 43 0 1462 350 85 20 chr12 4233465 4234413 -139552042 + L3 LINE CR1 31 1040 -537 601 278 97 17 chr12 4234504 4234853 -139551602 - L1ME4a LINE L1 -17 6087 5711 1526 289 40 13 chr12 4234873 4235350 -139551105 + L3 LINE CR1 1088 1577 0 341 310 9 26 chr12 4235529 4235645 -139550810 - MIR SINE MIR -50 212 99 182 333 33 33 chr12 4235875 4235965 -139550490 + L2 LINE L2 2690 2779 -535 362 307 82 23 chr12 4236287 4236593 -139549862 - L1ME4a LINE L1 -1299 4830 4507 720 286 54 0 chr12 4236872 4237113 -139549342 + MLT1L LTR MaLR 362 615 0 288 303 116 25 chr12 4237207 4237448 -139549007 - L1ME4a LINE L1 -1786 4343 4081 224 97 0 0 chr12 4237509 4237540 -139548915 + MER91B DNA MER1_type 33 63 -127 524 225 71 50 chr12 4237604 4237786 -139548669 - MLT1J LTR MaLR 0 511 326 761 291 77 44 chr12 4237905 4238506 -139547949 - L1ME4a LINE L1 -2682 3447 2821 902 142 103 0 chr12 4238538 4238693 -139547762 + AluSg/x SINE Alu 136 306 -6 265 309 42 27 chr12 4238970 4239306 -139547149 - L1ME4a LINE L1 -3649 2480 2140 1426 178 94 22 chr12 4239329 4239649 -139546806 + MER2 DNA MER2_type 1 343 -1 2452 58 41 0 chr12 4239821 4240114 -139546341 + AluY SINE Alu 1 305 -6 2192 106 10 0 chr12 4240289 4240581 -139545874 - AluSg1 SINE Alu -14 295 1 687 287 20 45 chr12 4240840 4241192 -139545263 - L1ME4a LINE L1 -4882 1237 895 708 263 174 57 chr12 4241228 4241688 -139544767 + MLT1H LTR MaLR 36 549 0 381 22 0 0 chr12 4242413 4242459 -139543996 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2145 97 4 0 chr12 4242461 4242740 -139543715 - AluY SINE Alu -31 280 1 1059 100 0 0 chr12 4242743 4242873 -139543582 - AluSg SINE Alu -180 130 1 22 35 0 0 chr12 4243006 4243035 -139543420 + AT_rich Low_complexity Low_complexity 1 29 0 359 323 47 8 chr12 4243397 4243524 -139542931 + L2 LINE L2 3141 3272 0 2516 56 0 7 chr12 4243893 4244196 -139542259 - AluY SINE Alu -10 301 1 2388 44 3 99 chr12 4245465 4245809 -139540646 + AluY SINE Alu 1 311 0 821 191 174 4 chr12 4245943 4246214 -139540241 - Charlie5 DNA MER1_type 0 2618 2 2639 59 0 0 chr12 4246767 4247074 -139539381 + AluY SINE Alu 1 307 -4 2501 125 5 16 chr12 4247774 4248142 -139538313 + THE1B LTR MaLR 1 364 0 230 152 51 63 chr12 4248178 4248257 -139538198 - L1M4c LINE L1 -5032 1352 1275 680 101 36 34 chr12 4248818 4248978 -139537477 - MER30 DNA MER1_type 0 230 1 460 324 56 14 chr12 4248978 4249120 -139537335 + MER91A DNA MER1_type 21 168 -28 1454 182 4 29 chr12 4249196 4249497 -139536958 + AluJo SINE Alu 15 308 0 183 42 0 0 chr12 4250422 4250446 -139536009 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2366 62 0 0 chr12 4250446 4250722 -139535733 - AluY SINE Alu -35 276 1 22 0 0 0 chr12 4250850 4250872 -139535583 + AT_rich Low_complexity Low_complexity 1 22 0 436 357 20 25 chr12 4250888 4251132 -139535323 - L2 LINE L2 -108 3164 2922 368 261 8 76 chr12 4251259 4251378 -139535077 - MLT1-int LTR MaLR -233 1138 1028 285 346 15 15 chr12 4251542 4251672 -139534783 - MLT1-int LTR MaLR -478 893 764 2286 113 7 0 chr12 4251941 4252250 -139534205 - AluSx SINE Alu -1 311 1 506 267 46 41 chr12 4252351 4252546 -139533909 - MLT1-int LTR MaLR -777 594 399 2234 130 30 28 chr12 4252558 4252920 -139533535 + THE1B LTR MaLR 1 363 -1 407 288 35 40 chr12 4252967 4253165 -139533290 - MLT1-int LTR MaLR -1158 213 17 2113 132 0 0 chr12 4253613 4253916 -139532539 - AluSx SINE Alu -9 303 1 351 353 0 20 chr12 4254011 4254161 -139532294 + MIR SINE MIR 85 231 -31 297 0 0 0 chr12 4254368 4254401 -139532054 + (A)n Simple_repeat Simple_repeat 1 33 0 183 42 0 0 chr12 4255993 4256017 -139530438 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 234 81 0 0 chr12 4256020 4256057 -139530398 + (T)n Simple_repeat Simple_repeat 1 37 0 247 161 195 11 chr12 4257541 4257628 -139528827 - MIR SINE MIR -99 163 61 257 191 209 29 chr12 4258182 4258287 -139528168 + MIR SINE MIR 50 173 -89 374 278 21 0 chr12 4258353 4258450 -139528005 + MIR SINE MIR 164 262 0 372 43 0 0 chr12 4258471 4258517 -139527938 + (CAT)n Simple_repeat Simple_repeat 3 48 0 192 339 83 18 chr12 4258841 4258950 -139527505 - L2 LINE L2 -19 3294 3179 293 211 0 0 chr12 4258963 4259020 -139527435 - MER5A DNA MER1_type -3 186 130 213 121 0 0 chr12 4259943 4259976 -139526479 + (TCCC)n Simple_repeat Simple_repeat 2 34 0 254 364 28 0 chr12 4261376 4261519 -139524936 + L2 LINE L2 2914 3060 -212 338 136 17 0 chr12 4261667 4261726 -139524729 - MER91 DNA MER1_type -14 126 67 3623 149 0 12 chr12 4262479 4263070 -139523385 + L1PA16 LINE L1 5582 6165 -1 408 279 107 46 chr12 4263315 4263512 -139522943 + MIR SINE MIR 20 228 -34 418 370 67 26 chr12 4263988 4264329 -139522126 + L2 LINE L2 2912 3266 -6 180 111 0 0 chr12 4264968 4264995 -139521460 + (TG)n Simple_repeat Simple_repeat 2 28 0 219 333 14 0 chr12 4266316 4266388 -139520067 + MIR3 SINE MIR 127 199 -9 324 247 0 12 chr12 4268827 4268908 -139517547 + MIR SINE MIR 69 148 -114 226 160 0 40 chr12 4268939 4268989 -139517466 + L2 LINE L2 3265 3312 -1 1123 180 52 14 chr12 4269213 4269424 -139517031 - MER20 DNA MER1_type 0 219 1 7696 167 28 46 chr12 4269591 4270654 -139515801 + L1MCa LINE L1 3 1029 -5397 2501 72 0 0 chr12 4270654 4270959 -139515496 + AluY SINE Alu 1 305 -6 7696 167 28 46 chr12 4270959 4271492 -139514963 + L1MCa LINE L1 1029 1570 -4856 3886 180 27 70 chr12 4271473 4271789 -139514666 + L1MB1 LINE L1 2256 2584 -3864 * 2147 92 0 7 chr12 4271789 4272108 -139514347 + AluY SINE Alu 1 317 0 3886 180 27 70 chr12 4272108 4272874 -139513581 + L1MB1 LINE L1 2584 6341 -107 1992 34 0 8 chr12 4272876 4273114 -139513341 + AluY SINE Alu 1 236 -75 6615 186 68 34 chr12 4273132 4273936 -139512519 + L1MC3 LINE L1 5127 5902 -244 2007 111 50 0 chr12 4273936 4274216 -139512239 + AluSg SINE Alu 1 294 -16 6615 186 68 34 chr12 4274216 4274974 -139511481 + L1MC3 LINE L1 5902 5302 -844 222 37 0 0 chr12 4274974 4275001 -139511454 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6615 186 68 34 chr12 4275001 4275108 -139511347 + L1MC3 LINE L1 5301 5403 -743 262 233 0 0 chr12 4275205 4275248 -139511207 + LTR49-int LTR ERV1 1244 1286 -5045 1044 49 0 21 chr12 4275309 4275453 -139511002 + L1MA5 LINE L1 6158 6298 -2 567 230 58 0 chr12 4276323 4276462 -139509993 + MIR SINE MIR 106 252 -10 306 304 25 50 chr12 4276549 4276710 -139509745 + L2 LINE L2 2935 3091 -181 185 324 162 14 chr12 4277628 4277776 -139508679 - L3b LINE CR1 -310 1273 1104 1546 87 0 5 chr12 4277790 4277985 -139508470 + AluY SINE Alu 102 295 -16 2913 214 98 50 chr12 4278045 4278101 -139508354 - L1MC4 LINE L1 -3 8039 7987 1923 137 21 3 chr12 4278101 4278385 -139508070 + AluJb SINE Alu 1 289 -23 2913 214 98 50 chr12 4278385 4278559 -139507896 - L1MC4 LINE L1 -55 7987 7823 2309 125 0 0 chr12 4278559 4278870 -139507585 + AluSq SINE Alu 1 311 -2 2913 214 98 50 chr12 4278870 4278926 -139507529 - L1MC4 LINE L1 -219 7823 7771 2525 64 0 0 chr12 4278926 4279222 -139507233 + AluY SINE Alu 1 296 -15 2913 214 98 50 chr12 4279222 4279948 -139506507 - L1MC4 LINE L1 -271 7771 6977 185 317 33 0 chr12 4281710 4281770 -139504685 + MIR SINE MIR 86 147 -115 295 328 8 0 chr12 4281771 4281890 -139504565 + (TA)n Simple_repeat Simple_repeat 1 120 0 245 261 31 0 chr12 4281905 4281970 -139504485 - MIR SINE MIR -115 147 81 994 339 133 6 chr12 4282064 4282907 -139503548 + L2 LINE L2 1806 2755 -559 1901 166 54 58 chr12 4282933 4283361 -139503094 + MSTB1 LTR MaLR 7 432 0 276 370 43 24 chr12 4283361 4283680 -139502775 + L2 LINE L2 2747 3069 -203 1855 156 11 3 chr12 4284368 4284651 -139501804 - AluSx SINE Alu -18 294 10 830 196 26 0 chr12 4284725 4284878 -139501577 - MER45A DNA AcHobo -1 177 21 408 239 62 18 chr12 4284924 4285037 -139501418 - L2 LINE L2 0 3313 3196 951 57 0 0 chr12 4285037 4285159 -139501296 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 354 68 0 0 chr12 4285159 4285203 -139501252 - Alu SINE Alu -18 283 240 2136 108 4 0 chr12 4285231 4285533 -139500922 - AluSg SINE Alu 0 304 2 2456 151 66 11 chr12 4285676 4286113 -139500342 + LOR1b LTR ERV1 1 461 0 203 293 0 24 chr12 4286950 4287032 -139499423 + CT-rich Low_complexity Low_complexity 1 80 0 224 0 0 61 chr12 4287309 4287342 -139499113 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 187 388 70 0 chr12 4288361 4288490 -139497965 + L2 LINE L2 2555 2692 -622 855 287 90 39 chr12 4288491 4288543 -139497912 - L1MEd LINE L1 -3103 3026 2978 991 182 41 45 chr12 4288543 4288591 -139497864 - MER20 DNA MER1_type 0 219 172 2685 32 0 3 chr12 4288591 4288901 -139497554 - AluY SINE Alu -2 309 1 991 182 41 45 chr12 4288901 4289072 -139497383 - MER20 DNA MER1_type -47 172 1 855 287 90 39 chr12 4289072 4289908 -139496547 - L1MEd LINE L1 -3151 2978 2093 395 301 60 66 chr12 4289910 4290213 -139496242 - L1MEd LINE L1 -4182 2128 1826 2166 106 6 41 chr12 4290213 4290533 -139495922 - AluSc SINE Alu 0 309 1 395 301 60 66 chr12 4290533 4290578 -139495877 - L1MEd LINE L1 -4484 1826 1782 1929 163 10 0 chr12 4290592 4290893 -139495562 - AluJo SINE Alu -8 304 1 749 295 91 28 chr12 4291038 4291832 -139494623 - L1MEd LINE L1 -824 1666 723 227 119 0 0 chr12 4291855 4291897 -139494558 - AluJb SINE Alu -2 300 259 1246 176 0 5 chr12 4291898 4292120 -139494335 - AluJb SINE Alu -91 221 1 720 317 67 70 chr12 4292200 4292605 -139493850 - L1MEd LINE L1 -5446 673 269 2462 53 0 3 chr12 4292605 4292906 -139493549 - AluY SINE Alu -11 300 1 720 317 67 70 chr12 4292906 4293169 -139493286 - L1MEd LINE L1 -5850 269 7 2269 93 0 0 chr12 4293268 4293569 -139492886 + AluSp SINE Alu 1 301 -12 248 250 83 0 chr12 4293944 4294004 -139492451 + L2 LINE L2 3228 3292 -21 1848 132 3 14 chr12 4294209 4294498 -139491957 - AluSx SINE Alu -26 286 1 197 225 202 79 chr12 4294691 4294754 -139491701 + L2 LINE L2 3173 3251 -21 2706 75 20 0 chr12 4294754 4295102 -139491353 - THE1A LTR MaLR 0 355 1 197 225 202 79 chr12 4295102 4295127 -139491328 + L2 LINE L2 3251 3272 0 306 125 0 0 chr12 4295302 4295350 -139491105 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 266 232 0 0 chr12 4295356 4295412 -139491043 - L2 LINE L2 0 3272 3217 2245 101 0 3 chr12 4295454 4295762 -139490693 + AluSg SINE Alu 1 307 -3 248 288 14 27 chr12 4295860 4295933 -139490522 - L2 LINE L2 0 3313 3242 201 182 0 0 chr12 4296054 4296087 -139490368 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 203 357 71 0 chr12 4297489 4297573 -139488882 + L2 LINE L2 3121 3210 -62 371 264 0 36 chr12 4298404 4298514 -139487941 + MIR3 SINE MIR 82 187 -21 * 391 208 52 42 chr12 4298511 4298607 -139487848 + L2 LINE L2 3176 3272 0 240 238 75 12 chr12 4298650 4298730 -139487725 + MIR SINE MIR 36 120 -88 * 386 186 35 23 chr12 4298725 4298811 -139487644 - MIR SINE MIR -87 121 35 776 264 40 9 chr12 4299461 4299672 -139486783 + MIR SINE MIR 39 255 -7 225 244 0 0 chr12 4299841 4299886 -139486569 - MIR3 SINE MIR -50 158 114 629 208 22 142 chr12 4299959 4300091 -139486364 + MIR SINE MIR 64 210 -52 234 0 0 0 chr12 4300091 4300117 -139486338 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 40 0 0 chr12 4300122 4300147 -139486308 + (CA)n Simple_repeat Simple_repeat 2 26 0 629 208 22 142 chr12 4300147 4300163 -139486292 + MIR SINE MIR 214 230 -32 1521 177 52 4 chr12 4300163 4300434 -139486021 + AluJo SINE Alu 1 284 -28 629 208 22 142 chr12 4300434 4300504 -139485951 + MIR SINE MIR 230 262 0 234 288 136 8 chr12 4301441 4301566 -139484889 + L2 LINE L2 3168 3308 -5 498 280 71 6 chr12 4301726 4301894 -139484561 + MLT1J2 LTR MaLR 34 212 -238 479 285 103 12 chr12 4302099 4302264 -139484191 - MIR3 SINE MIR -1 207 28 189 195 24 24 chr12 4302856 4302897 -139483558 + L2 LINE L2 3020 3060 -212 848 259 28 9 chr12 4303100 4303312 -139483143 - MIR SINE MIR -46 216 1 2132 95 7 0 chr12 4303405 4303699 -139482756 + AluY SINE Alu 1 296 -15 197 306 32 0 chr12 4303906 4303968 -139482487 - L2 LINE L2 0 3313 3250 2060 110 3 3 chr12 4305660 4305952 -139480503 + AluSc SINE Alu 6 297 -12 2431 60 0 0 chr12 4306124 4306425 -139480030 - AluSc SINE Alu -8 301 1 1793 209 16 16 chr12 4307292 4307666 -139478789 + MLT1A2 LTR MaLR 1 374 0 367 236 9 28 chr12 4307839 4307945 -139478510 + L1MC5 LINE L1 7814 7917 -44 2037 99 41 0 chr12 4308112 4308404 -139478051 - AluSc SINE Alu -5 304 1 740 321 66 30 chr12 4308674 4309137 -139477318 - L2 LINE L2 -91 3222 2745 21 0 0 0 chr12 4309312 4309333 -139477122 + AT_rich Low_complexity Low_complexity 1 21 0 845 128 0 0 chr12 4309510 4309635 -139476820 + AluSg/x SINE Alu 176 300 -12 182 280 0 40 chr12 4310778 4310828 -139475627 - L2 LINE L2 0 3272 3225 653 233 121 9 chr12 4310893 4310973 -139475482 + MER58 DNA MER1_type 1 71 -2349 2240 88 0 0 chr12 4310973 4311270 -139475185 + AluSg1 SINE Alu 1 297 -12 653 233 121 9 chr12 4311270 4311493 -139474962 + MER58 DNA MER1_type 71 2420 0 629 287 12 52 chr12 4311670 4311921 -139474534 + MIR SINE MIR 1 241 -21 339 278 53 30 chr12 4312831 4312964 -139473491 + MIR3 SINE MIR 62 197 -11 2106 103 3 7 chr12 4314158 4314460 -139471995 + AluSg SINE Alu 1 301 -9 2115 97 0 3 chr12 4314711 4315001 -139471454 - AluSq SINE Alu -15 298 10 431 213 25 0 chr12 4315032 4315112 -139471343 + L2 LINE L2 3232 3313 0 431 344 42 14 chr12 4315259 4315474 -139470981 - LTR16A LTR ERVL -34 416 196 2572 40 0 0 chr12 4315792 4316095 -139470360 - AluY SINE Alu -8 303 1 2133 110 0 10 chr12 4316101 4316411 -139470044 - AluSc SINE Alu -2 307 1 263 281 45 56 chr12 4316442 4316531 -139469924 - MLT1K LTR MaLR -411 177 90 207 204 0 0 chr12 4317210 4317254 -139469201 + GA-rich Low_complexity Low_complexity 2 45 0 2219 56 0 28 chr12 4317504 4317837 -139468618 + AluY SINE Alu 1 325 0 218 219 0 0 chr12 4317897 4317938 -139468517 - MIR3 SINE MIR -49 159 119 3834 235 58 68 chr12 4317938 4319040 -139467415 + L1MEc LINE L1 18 1130 -5266 2020 125 3 0 chr12 4319040 4319337 -139467118 + AluSq SINE Alu 4 301 -12 3834 235 58 68 chr12 4319337 4319631 -139466824 + L1MEc LINE L1 1130 1425 -4971 2237 96 0 3 chr12 4319631 4319933 -139466522 + AluY SINE Alu 1 301 -10 3834 235 58 68 chr12 4319933 4319958 -139466497 + L1MEc LINE L1 1425 1449 -4947 1591 182 21 3 chr12 4319958 4320244 -139466211 + AluJo SINE Alu 1 291 -21 3834 235 58 68 chr12 4320244 4320324 -139466131 + L1MEc LINE L1 1449 1506 -4890 717 89 0 0 chr12 4320460 4320550 -139465905 - AluY SINE Alu -220 91 2 274 222 14 14 chr12 4320551 4320623 -139465832 + L1MEc LINE L1 1510 1581 -4634 1930 150 0 3 chr12 4320623 4320936 -139465519 - AluSx SINE Alu 0 312 1 853 105 48 0 chr12 4320942 4321066 -139465389 + AluSg/x SINE Alu 162 291 -19 1789 245 103 40 chr12 4321067 4321602 -139464853 + L1MEc LINE L1 1651 2151 -4064 1939 125 3 3 chr12 4321602 4321897 -139464558 + AluSc SINE Alu 1 295 -14 1789 245 103 40 chr12 4321897 4322527 -139463928 + L1MEc LINE L1 2151 2889 -3326 614 206 103 122 chr12 4322506 4322826 -139463629 + L1M4 LINE L1 4871 5184 -1031 * 32 43 0 0 chr12 4323135 4323181 -139463274 + AT_rich Low_complexity Low_complexity 1 46 0 1587 108 0 0 chr12 4323201 4323424 -139463031 + L1MA4 LINE L1 5676 5898 -402 240 307 148 34 chr12 4323467 4323555 -139462900 + L2 LINE L2 3161 3258 -14 198 71 0 0 chr12 4323556 4323584 -139462871 + (GA)n Simple_repeat Simple_repeat 2 29 0 246 264 99 25 chr12 4324703 4324824 -139461631 - L3b LINE CR1 -161 1422 1293 545 217 159 13 chr12 4324928 4325085 -139461370 + MER5A DNA MER1_type 10 189 0 196 29 29 29 chr12 4326716 4326750 -139459705 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 209 290 14 14 chr12 4327116 4327185 -139459270 - MIR3 SINE MIR -129 79 11 320 228 205 16 chr12 4377876 4378003 -139408452 + MIR SINE MIR 56 206 -56 3303 64 0 7 chr12 4378018 4378469 -139407986 + LTR7 LTR ERV1 1 448 -2 19935 87 25 16 chr12 4378471 4381441 -139405014 + HERVH LTR ERV1 1 2995 -4718 882 129 27 0 chr12 4381420 4381567 -139404888 + HERVH LTR ERV1 3140 3290 -4423 * 944 141 0 0 chr12 4381569 4381711 -139404744 + HERVH LTR ERV1 3503 3644 -4069 * 2535 163 0 0 chr12 4381710 4382120 -139404335 + HERVH LTR ERV1 4740 5149 -2564 1298 125 18 36 chr12 4382121 4382345 -139404110 + HERVH LTR ERV1 5600 5819 -1894 * 2469 76 45 13 chr12 4382343 4382723 -139403732 + HERVH LTR ERV1 7322 7713 0 3317 56 5 7 chr12 4382723 4383172 -139403283 + LTR7 LTR ERV1 1 448 -2 2236 102 3 0 chr12 4383217 4383537 -139402918 + AluSp SINE Alu 1 321 0 227 318 61 38 chr12 4383545 4383677 -139402778 + L2 LINE L2 3172 3306 -7 2320 99 3 0 chr12 4383896 4384198 -139402257 + AluSp SINE Alu 1 303 -10 223 305 39 62 chr12 4385682 4385811 -139400644 - MIR SINE MIR -68 140 26 244 286 71 54 chr12 4386146 4386258 -139400197 + L2 LINE L2 3191 3304 -9 * 334 236 47 38 chr12 4386235 4386341 -139400114 - L2 LINE L2 -8 3264 3158 404 298 146 20 chr12 4387633 4387989 -139398466 + L2 LINE L2 2543 2943 -371 399 341 32 0 chr12 4388094 4388220 -139398235 + L2 LINE L2 3141 3270 -2 219 36 0 0 chr12 4388511 4388539 -139397916 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2202 87 7 0 chr12 4388539 4388814 -139397641 - AluSp SINE Alu -32 281 5 2163 98 7 23 chr12 4388902 4389209 -139397246 + AluJb SINE Alu 1 302 -10 208 286 0 16 chr12 4389211 4389274 -139397181 + (TA)n Simple_repeat Simple_repeat 2 63 0 213 229 0 0 chr12 4389455 4389503 -139396952 + L2 LINE L2 3265 3312 -1 292 302 28 18 chr12 4389646 4389765 -139396690 + MIR SINE MIR 36 164 -63 325 285 146 73 chr12 4389787 4390075 -139396380 - L2 LINE L2 -73 3199 2891 215 344 0 0 chr12 4390147 4390211 -139396244 - L2 LINE L2 -581 2733 2670 196 284 72 93 chr12 4390260 4390454 -139396001 - MIR3 SINE MIR -16 192 3 35 0 0 0 chr12 4390730 4390765 -139395690 + GC_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr12 4390783 4390818 -139395637 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr12 4390885 4390914 -139395541 + GC_rich Low_complexity Low_complexity 1 29 0 198 258 32 32 chr12 4391411 4391473 -139394982 + MIR3 SINE MIR 101 162 -46 * 446 210 84 56 chr12 4391464 4391607 -139394848 + MIR3 SINE MIR 16 162 -46 2477 84 0 3 chr12 4392015 4392324 -139394131 + AluSq SINE Alu 1 308 -5 465 216 45 52 chr12 4392522 4392656 -139393799 + MIR3 SINE MIR 66 198 -10 493 232 146 43 chr12 4393673 4393906 -139392549 - MER112 DNA MER1_type -3 257 1 420 340 54 17 chr12 4394385 4394626 -139391829 - L3b LINE CR1 -90 1493 1244 238 321 126 46 chr12 4395111 4395251 -139391204 - MIR3 SINE MIR -67 141 6 2223 68 32 36 chr12 4395597 4395906 -139390549 - AluY SINE Alu -3 308 1 1020 275 63 25 chr12 4396265 4396629 -139389826 - L3 LINE CR1 -4 1573 1196 333 320 116 6 chr12 4396707 4396888 -139389567 - MIR SINE MIR -16 246 46 2575 38 0 0 chr12 4398545 4398837 -139387618 + AluY SINE Alu 13 304 -7 1776 170 0 3 chr12 4399168 4399451 -139387004 + AluJb SINE Alu 1 282 -30 472 282 192 13 chr12 4399992 4400148 -139386307 + MIR3 SINE MIR 8 191 -17 234 321 24 12 chr12 4401455 4401539 -139384916 - MIR3 SINE MIR -9 199 115 241 258 62 52 chr12 4401614 4401711 -139384744 + MIR SINE MIR 21 118 -144 1980 148 6 3 chr12 4402061 4402372 -139384083 + AluJo SINE Alu 1 312 0 876 276 65 50 chr12 4402457 4402859 -139383596 - L2 LINE L2 0 3313 2906 287 292 75 33 chr12 4403286 4403406 -139383049 + L2 LINE L2 3177 3301 -12 186 254 111 0 chr12 4403644 4403707 -139382748 + MIR SINE MIR 66 135 -127 290 337 21 0 chr12 4405305 4405400 -139381055 - MIR3 SINE MIR -17 191 95 214 274 0 0 chr12 4406526 4406588 -139379867 + T-rich Low_complexity Low_complexity 1 62 0 431 254 105 72 chr12 4407327 4407420 -139379035 + MIR SINE MIR 34 122 -140 2162 115 0 0 chr12 4407420 4407708 -139378747 - AluY SINE Alu -18 293 6 431 254 105 72 chr12 4407708 4407823 -139378632 + MIR SINE MIR 122 249 -13 389 238 85 0 chr12 4407840 4407961 -139378494 + MIR SINE MIR 28 167 -61 279 288 85 65 chr12 4408046 4408199 -139378256 + MIR3 SINE MIR 48 203 -5 639 245 89 51 chr12 4408517 4408754 -139377701 + MIR SINE MIR 17 262 0 273 273 13 13 chr12 4408905 4408982 -139377473 + MER5B DNA MER1_type 93 169 -9 349 324 14 42 chr12 4409064 4409206 -139377249 + MIR3 SINE MIR 65 202 -6 597 277 13 56 chr12 4409503 4409774 -139376681 - MIR SINE MIR 0 262 3 1209 104 245 60 chr12 4410054 4410323 -139376132 + MER33 DNA MER1_type 1 319 -5 752 201 123 6 chr12 4410328 4410507 -139375948 + MIR SINE MIR 32 231 -31 187 207 9 180 chr12 4410749 4410860 -139375595 + L2 LINE L2 3168 3259 -13 500 277 162 7 chr12 4414056 4414204 -139372251 + MER5B DNA MER1_type 6 176 -2 252 0 0 0 chr12 4416978 4417006 -139369449 + (TCTG)n Simple_repeat Simple_repeat 4 31 0 2822 153 95 9 chr12 4417229 4417764 -139368691 - L1MD3 LINE L1 -11 7984 7404 527 204 0 19 chr12 4417764 4417867 -139368588 - MLT1F1 LTR MaLR -442 125 25 267 178 0 82 chr12 4417868 4417941 -139368514 - L1MD3 LINE L1 -895 7100 7034 1066 185 0 5 chr12 4417944 4418128 -139368327 - MLT1C LTR MaLR -1 466 284 * 1261 201 73 34 chr12 4418123 4418451 -139368004 - MLT1C LTR MaLR -120 347 7 3271 196 59 60 chr12 4418461 4418596 -139367859 - L1MD3 LINE L1 -18 6148 6869 198 0 0 0 chr12 4418596 4418618 -139367837 + (TC)n Simple_repeat Simple_repeat 1 22 0 3271 196 59 60 chr12 4418618 4419459 -139366996 - L1MD3 LINE L1 704 6870 6030 295 298 40 40 chr12 4419991 4420142 -139366313 + L2 LINE L2 2966 3116 -197 296 292 0 0 chr12 4420177 4420249 -139366206 + L2 LINE L2 3223 3294 -19 231 192 19 0 chr12 4420586 4420638 -139365817 + HAL1 LINE L1 2269 2321 -186 40 37 0 0 chr12 4420821 4420875 -139365580 + AT_rich Low_complexity Low_complexity 1 54 0 334 243 64 21 chr12 4420913 4421053 -139365402 - L1MC5 LINE L1 -99 7862 7717 318 273 0 0 chr12 4421204 4421281 -139365174 - L1MC4 LINE L1 -610 7432 7356 1245 150 134 8 chr12 4421423 4421669 -139364786 - Tigger3(Golem) DNA MER2_type -1 3028 2752 919 142 239 15 chr12 4421673 4421878 -139364577 + AluSg1 SINE Alu 49 299 -10 315 255 49 10 chr12 4421947 4422049 -139364406 - L1MC5 LINE L1 -895 7066 6961 3409 201 67 27 chr12 4422101 4422907 -139363548 - L1ME2 LINE L1 -9 6155 5318 * 9631 162 45 18 chr12 4422902 4425593 -139360862 - L1MC1 LINE L1 -1 6612 3995 1796 171 0 3 chr12 4425593 4425879 -139360576 - AluJb SINE Alu -27 285 1 9631 162 45 18 chr12 4425879 4429463 -139356992 - L1MC1 LINE L1 -2618 3995 5 411 213 130 0 chr12 4429443 4429551 -139356904 - L1ME2 LINE L1 -810 5336 5215 * 231 146 0 134 chr12 4429550 4429632 -139356823 - L1MC5 LINE L1 -1008 6953 6883 * 256 274 65 114 chr12 4429845 4429886 -139356569 + MARNA DNA Mariner 26 67 -519 2269 91 0 13 chr12 4429886 4430194 -139356261 - AluY SINE Alu -7 304 1 256 274 65 114 chr12 4430194 4430353 -139356102 + MARNA DNA Mariner 67 216 -370 464 298 59 43 chr12 4430375 4430630 -139355825 - MIR SINE MIR -2 260 2 249 304 51 0 chr12 4430730 4430809 -139355646 - MARNA DNA Mariner -416 170 88 2212 203 53 69 chr12 4431098 4431423 -139355032 - L1MD2 LINE L1 0 6753 6441 1892 144 7 17 chr12 4431423 4431588 -139354867 - AluJo SINE Alu -13 299 137 1957 140 10 0 chr12 4431588 4431880 -139354575 - AluSx SINE Alu -17 295 1 1892 144 7 17 chr12 4431880 4432012 -139354443 - AluJo SINE Alu -175 137 5 2212 203 53 69 chr12 4432012 4432312 -139354143 - L1MD2 LINE L1 -312 6441 6138 1486 164 19 22 chr12 4432372 4432641 -139353814 - L1MD2 LINE L1 -502 6134 5867 2057 102 19 56 chr12 4432644 4432967 -139353488 - AluY SINE Alu 0 311 1 312 194 26 17 chr12 4432982 4433068 -139353387 - L1MD2 LINE L1 0 7769 7685 1461 184 40 114 chr12 4433068 4433238 -139353217 + MLT1A2 LTR MaLR 1 182 -192 285 29 0 0 chr12 4433238 4433272 -139353183 + (TC)n Simple_repeat Simple_repeat 1 34 0 1461 184 40 114 chr12 4433272 4433316 -139353139 + MLT1A2 LTR MaLR 182 228 -146 366 23 0 0 chr12 4433316 4433359 -139353096 + (TC)n Simple_repeat Simple_repeat 1 43 0 1461 184 40 114 chr12 4433359 4433545 -139352910 + MLT1A2 LTR MaLR 228 372 -2 312 194 26 17 chr12 4433545 4434172 -139352283 - L1MD2 LINE L1 -84 7685 6243 * 6910 220 53 21 chr12 4434170 4435912 -139350543 - L1MD2 LINE L1 -743 5797 4114 8630 129 10 6 chr12 4435912 4436453 -139350002 + L1PA10 LINE L1 4102 4639 -1529 1948 131 13 35 chr12 4436453 4436744 -139349711 + AluSx SINE Alu 1 286 -26 333 0 0 0 chr12 4436744 4436781 -139349674 + (CA)n Simple_repeat Simple_repeat 2 38 0 1948 131 13 35 chr12 4436781 4436801 -139349654 + AluSx SINE Alu 286 305 -7 8630 129 10 6 chr12 4436801 4438324 -139348131 + L1PA10 LINE L1 4639 6164 -4 6910 220 53 21 chr12 4438324 4438703 -139347752 - L1MD2 LINE L1 -2426 4114 3683 2413 192 19 24 chr12 4438704 4439168 -139347287 - L1MD2 LINE L1 -6061 479 18 706 288 62 64 chr12 4440480 4440935 -139345520 - MLT1J LTR MaLR -57 454 1 272 246 146 31 chr12 4441418 4441548 -139344907 - MIR SINE MIR -62 146 28 1212 190 4 4 chr12 4441599 4441825 -139344630 - AluJb SINE Alu -6 306 81 1797 151 10 7 chr12 4441826 4442117 -139344338 - AluJo SINE Alu -20 292 1 294 240 163 47 chr12 4442162 4442291 -139344164 - MIR SINE MIR -71 191 48 272 301 136 11 chr12 4443588 4443764 -139342691 - MIR SINE MIR -27 235 38 189 261 0 0 chr12 4444832 4444878 -139341577 - L3 LINE CR1 -9 1568 1523 233 298 39 19 chr12 4445056 4445160 -139341295 - MIR SINE MIR -98 164 59 33 0 0 0 chr12 4446549 4446582 -139339873 + AT_rich Low_complexity Low_complexity 1 33 0 693 100 0 0 chr12 4446674 4446774 -139339681 + AluY SINE Alu 208 307 -4 2051 167 30 3 chr12 4446879 4447245 -139339210 + L1MB5 LINE L1 5799 6174 0 272 75 57 75 chr12 4447262 4447315 -139339140 + L1MC1 LINE L1 6281 6332 -1 236 301 135 12 chr12 4447508 4447612 -139338843 + L2 LINE L2 3071 3161 -111 2391 104 3 0 chr12 4447612 4447920 -139338535 - AluSp SINE Alu -4 309 1 236 301 135 12 chr12 4447920 4447978 -139338477 + L2 LINE L2 3161 3253 -19 240 187 13 80 chr12 4447988 4448063 -139338392 + MIR SINE MIR 56 125 -83 252 279 139 0 chr12 4448457 4448586 -139337869 - MIR SINE MIR -62 200 54 212 365 69 14 chr12 4448612 4448757 -139337698 + L3b LINE CR1 1406 1558 -25 342 276 270 6 chr12 4449361 4449524 -139336931 - MIR SINE MIR -42 220 15 1096 236 105 57 chr12 4449622 4450306 -139336149 - L1MC5 LINE L1 -36 7925 7260 331 293 30 0 chr12 4450991 4451090 -139335365 - MIR3 SINE MIR -25 183 82 1048 154 0 0 chr12 4451092 4451254 -139335201 + FRAM SINE Alu 2 163 -13 194 310 35 78 chr12 4451746 4451862 -139334593 + L2 LINE L2 3203 3313 0 388 247 69 70 chr12 4452002 4452251 -139334204 - Charlie2a DNA MER1_type -32 2830 2582 1879 176 3 3 chr12 4452251 4452558 -139333897 - AluJb SINE Alu -5 307 1 388 247 69 70 chr12 4452558 4452807 -139333648 - Charlie2a DNA MER1_type -280 2582 2274 7260 220 56 69 chr12 4452814 4454715 -139331740 + L1MD1 LINE L1 2713 4638 -1591 1180 190 138 30 chr12 4454715 4454984 -139331471 + AluJo SINE Alu 5 302 0 7260 220 56 69 chr12 4454984 4454995 -139331460 + L1MD1 LINE L1 4638 4648 -1581 2575 65 0 0 chr12 4454995 4455302 -139331153 + AluY SINE Alu 1 307 -4 7260 220 56 69 chr12 4455302 4455659 -139330796 + L1MD1 LINE L1 4648 5008 -1221 381 43 0 0 chr12 4455659 4455706 -139330749 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2256 89 3 0 chr12 4455706 4455988 -139330467 - AluSp SINE Alu -30 283 1 7260 220 56 69 chr12 4455988 4456167 -139330288 + L1MD1 LINE L1 5007 5187 -1042 2244 116 0 3 chr12 4456167 4456477 -139329978 + AluSc SINE Alu 1 309 0 7260 220 56 69 chr12 4456477 4456845 -139329610 + L1MD1 LINE L1 5187 5486 -743 4959 196 25 63 chr12 4459264 4460500 -139325955 + L1MC2 LINE L1 4084 5365 -979 2111 80 29 0 chr12 4460500 4460798 -139325657 + AluY SINE Alu 1 306 0 4959 196 25 63 chr12 4460798 4461057 -139325398 + L1MC2 LINE L1 5365 5632 -712 793 142 0 8 chr12 4461057 4461191 -139325264 - L1PB2 LINE L1 -4 6147 6015 4959 196 25 63 chr12 4461191 4462039 -139324416 + L1MC2 LINE L1 5632 6343 -1 2205 86 0 4 chr12 4462064 4462342 -139324113 - AluSg SINE Alu -20 290 14 2751 225 60 3 chr12 4462363 4463034 -139323421 + L1MC3 LINE L1 7075 7783 -2 3223 172 17 32 chr12 4463043 4463676 -139322779 + L1MD1 LINE L1 5475 6098 -144 250 204 0 0 chr12 4463676 4463725 -139322730 + AluJ/monomer SINE Alu 257 305 -3 1961 73 4 4 chr12 4463739 4463987 -139322468 - AluSp SINE Alu -17 296 49 2853 199 56 38 chr12 4463989 4464013 -139322442 - Charlie2a DNA MER1_type -610 2252 2230 2276 75 0 0 chr12 4464013 4464319 -139322136 - AluY SINE Alu 0 306 1 2853 199 56 38 chr12 4464319 4465023 -139321432 - Charlie2a DNA MER1_type -632 2230 1506 2292 118 0 0 chr12 4465023 4465327 -139321128 - AluSc SINE Alu -5 304 1 2853 199 56 38 chr12 4465327 4465364 -139321091 - Charlie2a DNA MER1_type -1356 1506 1471 410 53 18 0 chr12 4465420 4465477 -139320978 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1570 266 116 38 chr12 4465498 4466110 -139320345 - Charlie2b DNA MER1_type -2117 665 6 183 80 0 0 chr12 4467390 4467415 -139319040 + (A)n Simple_repeat Simple_repeat 1 25 0 2070 135 0 3 chr12 4467420 4467717 -139318738 + AluJo SINE Alu 3 298 -14 388 311 62 6 chr12 4468275 4468436 -139318019 - MIR SINE MIR -1 261 92 254 308 158 0 chr12 4468479 4468612 -139317843 + L3 LINE CR1 1404 1557 -20 209 256 0 13 chr12 4468701 4468779 -139317676 + GA-rich Low_complexity Low_complexity 3 79 0 27 29 0 0 chr12 4468794 4468828 -139317627 + AT_rich Low_complexity Low_complexity 1 34 0 669 179 0 83 chr12 4468986 4469131 -139317324 - FLAM_C SINE Alu 0 133 1 200 263 163 67 chr12 4469728 4469820 -139316635 - L2 LINE L2 -238 3034 2952 1857 140 3 42 chr12 4469820 4470127 -139316328 + AluJo SINE Alu 2 296 -16 200 263 163 67 chr12 4470127 4470243 -139316212 - L2 LINE L2 -320 2952 2806 1653 163 88 0 chr12 4471404 4471735 -139314720 + MER46B DNA MER2_type 1 235 -1 531 247 89 32 chr12 4471963 4472210 -139314245 + L2 LINE L2 3050 3310 -3 298 310 70 10 chr12 4472232 4472332 -139314123 + L2 LINE L2 3116 3221 -51 309 51 0 0 chr12 4472355 4472394 -139314061 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 219 274 0 0 chr12 4472424 4472475 -139313980 - L2 LINE L2 -12 3260 3210 238 289 20 94 chr12 4473040 4473189 -139313266 - MIR3 SINE MIR -3 205 68 419 234 52 16 chr12 4473411 4473556 -139312899 + L1ME3 LINE L1 5987 6132 -38 1236 35 0 0 chr12 4473646 4473787 -139312668 + AluY SINE Alu 165 305 -6 2574 62 0 3 chr12 4473805 4474111 -139312344 + AluSc SINE Alu 1 305 -4 254 133 44 0 chr12 4474115 4474160 -139312295 - MIR SINE MIR -96 166 120 869 106 50 7 chr12 4474307 4474448 -139312007 - L1MB3 LINE L1 -3 6180 6034 331 299 0 0 chr12 4474450 4474547 -139311908 + MIR SINE MIR 49 145 -117 3290 138 2 8 chr12 4474575 4475055 -139311400 + MER1A DNA MER1_type 53 529 0 328 364 29 0 chr12 4475752 4475892 -139310563 + MIR SINE MIR 49 192 -70 233 273 39 26 chr12 4477024 4477101 -139309354 - MIR SINE MIR -98 164 87 189 0 0 0 chr12 4477785 4477806 -139308649 + (TG)n Simple_repeat Simple_repeat 1 21 0 249 119 0 0 chr12 4478004 4478046 -139308409 + (TC)n Simple_repeat Simple_repeat 1 42 0 225 128 0 0 chr12 4478045 4478092 -139308363 + (CA)n Simple_repeat Simple_repeat 1 47 0 * 256 193 35 0 chr12 4478476 4478533 -139307922 - L3 LINE CR1 -119 1458 1400 262 167 0 0 chr12 4479087 4479135 -139307320 - MIR SINE MIR -108 154 107 571 298 128 5 chr12 4480391 4480609 -139305846 - MIR SINE MIR -1 261 17 209 222 0 19 chr12 4480701 4480755 -139305700 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 425 295 47 37 chr12 4481481 4481671 -139304784 + MIR SINE MIR 51 242 -20 2459 79 0 0 chr12 4481805 4482109 -139304346 - AluSq SINE Alu -5 308 5 2490 51 3 26 chr12 4482121 4482432 -139304023 - AluY SINE Alu -7 304 1 198 0 0 0 chr12 4482598 4482620 -139303835 + (CA)n Simple_repeat Simple_repeat 1 22 0 338 275 84 28 chr12 4483455 4483597 -139302858 - MIR SINE MIR -93 169 20 2464 48 10 0 chr12 4483762 4484054 -139302401 - AluSg SINE Alu -15 295 1 2268 107 0 0 chr12 4484478 4484777 -139301678 + AluSq SINE Alu 1 299 -14 2924 207 12 14 chr12 4484806 4485518 -139300937 - L1M LINE L1 -737 5429 4720 4083 289 66 52 chr12 4485522 4485814 -139300641 - L1ME3A LINE L1 -232 6174 5888 2585 47 0 3 chr12 4485814 4486111 -139300344 + AluY SINE Alu 1 296 -15 4083 289 66 52 chr12 4486111 4487455 -139299000 - L1ME3A LINE L1 -518 5888 4564 1886 179 0 0 chr12 4487455 4487751 -139298704 - AluJo SINE Alu -16 296 1 4083 289 66 52 chr12 4487751 4487972 -139298483 - L1ME3A LINE L1 -1842 4564 4348 234 62 0 0 chr12 4487972 4488004 -139298451 + (TG)n Simple_repeat Simple_repeat 1 32 0 4083 289 66 52 chr12 4488004 4488522 -139297933 - L1ME3A LINE L1 -2058 4348 3839 2239 103 3 0 chr12 4488522 4488838 -139297617 - AluSp SINE Alu 0 313 1 4083 289 66 52 chr12 4488838 4489054 -139297401 - L1ME3A LINE L1 -2567 3839 3627 1939 205 55 26 chr12 4489054 4489417 -139297038 - MLT1C LTR MaLR 0 467 116 233 0 62 0 chr12 4489417 4489449 -139297006 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2111 111 0 11 chr12 4489452 4489732 -139296723 - AluSx SINE Alu -31 281 5 1939 205 55 26 chr12 4489732 4489818 -139296637 - MLT1C LTR MaLR -352 115 1 4083 289 66 52 chr12 4489818 4490827 -139295628 - L1ME3A LINE L1 -2779 3627 2518 1565 187 33 0 chr12 4490827 4491127 -139295328 - AluJb SINE Alu -2 310 1 4083 289 66 52 chr12 4491127 4491176 -139295279 - L1ME3A LINE L1 -3888 2518 2471 241 205 60 24 chr12 4491260 4491343 -139295112 - L1ME3A LINE L1 -3967 2417 2332 323 295 44 6 chr12 4491620 4491823 -139294632 - L1M4c LINE L1 -4444 1938 1620 683 199 29 15 chr12 4491835 4491971 -139294484 - LTR40a LTR ERVL -379 140 3 595 230 23 40 chr12 4492722 4492896 -139293559 - MER5A DNA MER1_type -5 184 14 446 320 11 17 chr12 4494809 4494990 -139291465 - MIR3 SINE MIR -10 198 19 2247 75 3 3 chr12 4495005 4495318 -139291137 - AluY SINE Alu 0 313 1 183 80 0 0 chr12 4495599 4495624 -139290831 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 293 68 23 0 chr12 4495868 4495912 -139290543 + (TG)n Simple_repeat Simple_repeat 2 46 0 214 296 71 31 chr12 4496661 4496759 -139289696 - MIR SINE MIR -113 149 48 1805 131 78 11 chr12 4497289 4497571 -139288884 + AluJb SINE Alu 1 301 -11 7520 48 0 0 chr12 4497866 4498767 -139287688 - L1PA5 LINE L1 0 6154 5254 180 324 96 7 chr12 4498788 4498924 -139287531 + L3 LINE CR1 1418 1565 -12 219 238 88 62 chr12 4499230 4499310 -139287145 + L2 LINE L2 3214 3295 -18 1476 194 3 31 chr12 4499320 4499609 -139286846 + AluJo SINE Alu 1 281 -31 325 239 37 30 chr12 4499922 4500056 -139286399 + CT-rich Low_complexity Low_complexity 2 136 0 236 324 120 9 chr12 4500738 4500846 -139285609 - L3b LINE CR1 -27 1556 1437 328 235 0 0 chr12 4501085 4501153 -139285302 + MIR SINE MIR 194 261 -1 419 250 45 30 chr12 4501415 4501547 -139284908 + MER94 DNA DNA 1 134 0 1779 169 3 3 chr12 4501625 4501909 -139284546 - AluJb SINE Alu -14 298 15 194 341 48 16 chr12 4501990 4502116 -139284339 + MER5A DNA MER1_type 33 162 -27 187 246 77 15 chr12 4502227 4502292 -139284163 - MIR SINE MIR -93 115 47 2263 109 3 3 chr12 4502857 4503169 -139283286 + AluSx SINE Alu 1 312 0 261 194 0 16 chr12 4503467 4503529 -139282926 - MIR SINE MIR -139 123 63 263 294 33 11 chr12 4503715 4503807 -139282648 - MIR3 SINE MIR -4 204 111 1169 238 188 22 chr12 4503835 4504372 -139282083 + Charlie2b DNA MER1_type 44 669 -2113 1043 235 128 18 chr12 4504458 4504678 -139281777 + L2 LINE L2 597 791 -2523 2151 91 24 7 chr12 4504678 4504965 -139281490 - AluSg SINE Alu -18 292 1 1043 235 128 18 chr12 4504965 4505190 -139281265 + L2 LINE L2 791 1091 -2223 353 294 125 0 chr12 4506100 4506260 -139280195 + MIR SINE MIR 49 228 -34 203 182 81 61 chr12 4506403 4506502 -139279953 + MIR SINE MIR 42 142 -66 267 282 166 30 chr12 4506894 4507058 -139279397 + MIR SINE MIR 18 196 -62 417 286 66 36 chr12 4507182 4507378 -139279077 - MIR SINE MIR -1 261 60 686 161 161 21 chr12 4507547 4507690 -139278765 - FRAM SINE Alu -12 164 2 202 344 22 0 chr12 4507927 4508017 -139278438 - MIR3 SINE MIR -16 192 101 2402 39 7 7 chr12 4508864 4509197 -139277258 - AluY SINE Alu 0 333 1 6606 84 14 2 chr12 4509204 4509872 -139276583 - L1PA14 LINE L1 0 6161 5478 2352 83 7 10 chr12 4509872 4510174 -139276281 - AluSp SINE Alu -12 301 1 6606 84 14 2 chr12 4510174 4510402 -139276053 - L1PA14 LINE L1 -683 5478 5254 2367 91 0 3 chr12 4510635 4510932 -139275523 + AluSq SINE Alu 1 296 -17 401 241 9 0 chr12 4510942 4511054 -139275401 + CT-rich Low_complexity Low_complexity 3 115 0 240 257 27 14 chr12 4511802 4511876 -139274579 + L1ME LINE L1 5845 5919 -202 2242 112 0 0 chr12 4512354 4512657 -139273798 - AluSx SINE Alu -9 303 1 268 214 36 116 chr12 4513366 4513478 -139272977 + MIR SINE MIR 84 186 -76 5234 158 56 27 chr12 4513478 4513530 -139272925 + L1MC2 LINE L1 5293 5342 -1002 946 107 15 0 chr12 4513530 4513661 -139272794 + FLAM_C SINE Alu 1 133 0 5234 158 56 27 chr12 4513661 4514021 -139272434 + L1MC2 LINE L1 5342 5690 -654 1974 123 18 0 chr12 4514021 4514325 -139272130 - AluSx SINE Alu 0 309 1 5234 158 56 27 chr12 4514325 4514932 -139271523 + L1MC2 LINE L1 5690 6343 -1 274 186 14 86 chr12 4514944 4515014 -139271441 + MIR3 SINE MIR 91 155 -53 325 157 0 0 chr12 4515021 4515072 -139271383 - MER3 DNA MER1_type -127 82 32 2264 102 0 10 chr12 4515096 4515400 -139271055 - AluSc SINE Alu -8 301 1 2456 81 0 0 chr12 4517178 4517475 -139268980 + AluSp SINE Alu 1 297 -16 2023 117 31 3 chr12 4517487 4517778 -139268677 + AluSq SINE Alu 1 299 -14 207 0 0 0 chr12 4517916 4517939 -139268516 + (T)n Simple_repeat Simple_repeat 1 23 0 924 143 75 7 chr12 4518567 4518714 -139267741 - FRAM SINE Alu -19 157 1 1003 199 103 18 chr12 4518714 4518943 -139267512 + L1ME3A LINE L1 5863 6122 -48 2326 107 0 3 chr12 4518943 4519253 -139267202 + AluSc SINE Alu 1 309 0 1003 199 103 18 chr12 4519253 4519304 -139267151 + L1ME3A LINE L1 6122 6167 -3 723 136 8 8 chr12 4519310 4519428 -139267027 + FLAM_C SINE Alu 17 134 -9 1207 224 98 67 chr12 4519660 4520110 -139266345 + MLT1C LTR MaLR 1 464 -3 2254 102 3 0 chr12 4520642 4520976 -139265479 - AluSx SINE Alu 0 335 1 1021 221 78 11 chr12 4521438 4521719 -139264736 + Charlie2b DNA MER1_type 370 669 -2113 2392 177 174 47 chr12 4521753 4522066 -139264389 + Charlie2a DNA MER1_type 1472 1744 -1118 2327 89 3 0 chr12 4522066 4522358 -139264097 - AluSg SINE Alu -17 293 1 2392 177 174 47 chr12 4522358 4522662 -139263793 + Charlie2a DNA MER1_type 1744 2008 -854 2586 47 3 0 chr12 4522662 4522961 -139263494 + AluY SINE Alu 1 300 -11 2392 177 174 47 chr12 4522961 4523171 -139263284 + Charlie2a DNA MER1_type 2008 2190 -672 1593 126 29 8 chr12 4523171 4523410 -139263045 - AluJo SINE Alu -9 303 60 2392 177 174 47 chr12 4523410 4523682 -139262773 + Charlie2a DNA MER1_type 2190 2778 -84 204 40 0 0 chr12 4524013 4524038 -139262417 + (T)n Simple_repeat Simple_repeat 1 25 0 207 270 190 35 chr12 4525593 4525767 -139260688 + L2 LINE L2 2984 3184 -129 2187 125 0 0 chr12 4526012 4526307 -139260148 - AluSx SINE Alu -17 295 1 311 189 42 11 chr12 4526314 4526409 -139260046 + (TA)n Simple_repeat Simple_repeat 1 98 0 190 343 67 0 chr12 4526425 4526530 -139259925 + L2 LINE L2 3136 3247 -25 404 282 0 9 chr12 4526755 4526865 -139259590 - L1M4 LINE L1 -3575 2571 2463 240 294 42 25 chr12 4527535 4527654 -139258801 - L2 LINE L2 -210 3062 2942 705 227 167 32 chr12 4527707 4527958 -139258497 - Charlie8 DNA MER1_type -2132 285 1 1367 330 104 28 chr12 4528065 4528561 -139257894 - L2 LINE L2 -556 2758 2301 2137 139 0 3 chr12 4528561 4528863 -139257592 + AluSx SINE Alu 1 301 -11 1367 330 104 28 chr12 4528863 4529511 -139256944 - L2 LINE L2 -1013 2301 1527 223 241 20 0 chr12 4529818 4529883 -139256572 + MIR SINE MIR 17 81 -133 1862 123 0 7 chr12 4529939 4530208 -139256247 + AluJb SINE Alu 39 305 -7 2334 136 8 0 chr12 4531042 4531390 -139255065 - L1PB4 LINE L1 -13 6143 5790 270 0 0 0 chr12 4531390 4531420 -139255035 + (TG)n Simple_repeat Simple_repeat 2 31 0 2334 136 8 0 chr12 4531420 4531438 -139255017 - L1PB4 LINE L1 -366 5790 5774 43 88 0 0 chr12 4531445 4531558 -139254897 + AT_rich Low_complexity Low_complexity 1 113 0 24 32 0 0 chr12 4531613 4531644 -139254811 + AT_rich Low_complexity Low_complexity 1 31 0 477 88 32 40 chr12 4531725 4531850 -139254605 + (TA)n Simple_repeat Simple_repeat 1 124 0 252 269 14 21 chr12 4531853 4531994 -139254461 + (TTA)n Simple_repeat Simple_repeat 3 142 0 348 133 0 0 chr12 4532025 4532085 -139254370 + (TA)n Simple_repeat Simple_repeat 1 60 0 713 145 17 29 chr12 4532098 4532249 -139254206 - L1PB4 LINE L1 -375 5781 5645 1579 243 207 16 chr12 4532519 4533012 -139253443 - MLT1E LTR MaLR -6 587 1 390 276 92 15 chr12 4533135 4533331 -139253124 - MIR SINE MIR -28 234 24 418 273 0 18 chr12 4533477 4533587 -139252868 - MLT1J LTR MaLR -85 426 319 2228 172 46 0 chr12 4533838 4534251 -139252204 + MSTB1 LTR MaLR 1 432 0 405 260 87 119 chr12 4534301 4534401 -139252054 - HAL1b LINE L1 -461 887 785 2364 88 0 7 chr12 4534401 4534697 -139251758 - AluSp SINE Alu -19 294 1 405 260 87 119 chr12 4534697 4534834 -139251621 - HAL1b LINE L1 -563 785 645 336 192 26 0 chr12 4534834 4534912 -139251543 + MER116 DNA Mariner 1 80 0 405 260 87 119 chr12 4534912 4535319 -139251136 - HAL1b LINE L1 -703 645 263 2155 80 0 0 chr12 4535335 4535625 -139250830 + AluSg1 SINE Alu 18 307 0 349 43 43 29 chr12 4535828 4535898 -139250557 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 390 247 51 51 chr12 4535987 4536165 -139250290 + L1MC4a LINE L1 5741 5918 -1890 1660 147 110 7 chr12 4536323 4536596 -139249859 - AluSx SINE Alu -11 301 1 1794 281 90 68 chr12 4536718 4537211 -139249244 + L1MEc LINE L1 35 516 -5880 2141 117 0 43 chr12 4537211 4537537 -139248918 + AluSx SINE Alu 1 312 0 2360 107 0 0 chr12 4537547 4537855 -139248600 + AluSx SINE Alu 1 308 -4 1794 281 90 68 chr12 4537855 4538755 -139247700 + L1MEc LINE L1 524 1470 -4926 2859 190 104 102 chr12 4538874 4539142 -139247313 + L1MEc LINE L1 2574 2840 -3375 225 125 0 0 chr12 4539142 4539174 -139247281 - Alu SINE Alu -224 78 47 2859 190 104 102 chr12 4539174 4539259 -139247196 + L1MEc LINE L1 2840 2923 -3292 7971 19 0 0 chr12 4539259 4540298 -139246157 - L1PA3 LINE L1 0 6155 5117 2859 190 104 102 chr12 4540298 4540839 -139245616 + L1MEc LINE L1 2923 3461 -2754 2167 102 0 7 chr12 4540839 4541124 -139245331 - AluSg SINE Alu -27 283 1 2859 190 104 102 chr12 4541124 4541156 -139245299 + L1MEc LINE L1 3461 3491 -2724 2326 45 52 3 chr12 4541156 4541445 -139245010 - AluY SINE Alu -8 303 1 2859 190 104 102 chr12 4541445 4541869 -139244586 + L1MEc LINE L1 3491 3986 -2229 337 314 20 65 chr12 4541912 4542157 -139244298 + L1M4 LINE L1 3702 3935 -2211 492 269 138 39 chr12 4542221 4542503 -139243952 - L2 LINE L2 -4 3309 3000 2061 238 41 23 chr12 4542678 4543330 -139243125 + HAL1 LINE L1 1076 1739 -768 767 307 121 18 chr12 4543346 4543799 -139242656 + MLT1J LTR MaLR 11 510 -1 1891 256 69 46 chr12 4543804 4544543 -139241912 + HAL1 LINE L1 1752 2507 0 1313 274 146 35 chr12 4544631 4545015 -139241440 + L1MC4a LINE L1 3797 4137 -1984 683 297 29 0 chr12 4545015 4545224 -139241231 - MER58C DNA MER1_type 0 215 1 1313 274 146 35 chr12 4545224 4546385 -139240070 + L1MC4a LINE L1 4137 5168 -953 2327 93 3 7 chr12 4546385 4546686 -139239769 + AluSq SINE Alu 1 300 -13 1313 274 146 35 chr12 4546686 4546875 -139239580 + L1MC4a LINE L1 5168 5335 -786 1783 171 3 0 chr12 4546875 4547161 -139239294 - AluJb SINE Alu -21 291 5 1313 274 146 35 chr12 4547161 4547341 -139239114 + L1MC4a LINE L1 5335 5951 -170 229 191 58 159 chr12 4547473 4547579 -139238876 - L1ME4a LINE L1 -35 6086 5971 210 43 22 43 chr12 4547579 4547625 -139238830 + (TTA)n Simple_repeat Simple_repeat 2 46 0 229 191 58 159 chr12 4547625 4547707 -139238748 - L1ME4a LINE L1 -150 5971 5928 1756 135 6 79 chr12 4547707 4548025 -139238430 + AluJb SINE Alu 1 295 -17 229 191 58 159 chr12 4548025 4548092 -139238363 - L1ME4a LINE L1 -193 5928 5856 197 280 130 30 chr12 4548501 4548601 -139237854 - L2 LINE L2 -4 3268 3159 533 348 8 37 chr12 4549757 4550001 -139236454 - MIR SINE MIR -6 256 20 2111 196 19 21 chr12 4550025 4550490 -139235965 - MLT1C LTR MaLR -3 464 1 205 176 0 0 chr12 4550509 4550543 -139235912 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 304 306 96 25 chr12 4550754 4550911 -139235544 - MIR SINE MIR -60 202 35 1744 166 32 3 chr12 4551390 4551673 -139234782 - AluJo SINE Alu -19 293 3 421 293 16 69 chr12 4552035 4552163 -139234292 - MER5B DNA MER1_type 0 178 62 1855 162 0 23 chr12 4552163 4552465 -139233990 - AluJo SINE Alu -13 299 5 421 293 16 69 chr12 4552465 4552524 -139233931 - MER5B DNA MER1_type -116 62 1 1752 142 28 34 chr12 4552830 4553153 -139233302 + L1MC2 LINE L1 6024 6344 0 309 324 54 0 chr12 4553786 4553934 -139232521 - MIR SINE MIR -13 249 94 2314 79 10 0 chr12 4554481 4554773 -139231682 + AluSp SINE Alu 6 300 -13 316 300 49 60 chr12 4555012 4555279 -139231176 - L2 LINE L2 -1 3312 3049 544 307 78 13 chr12 4555426 4555457 -139230998 + MIR SINE MIR 4 32 -230 2409 86 0 3 chr12 4555457 4555759 -139230696 + AluSc SINE Alu 1 301 -8 544 307 78 13 chr12 4555759 4555958 -139230497 + MIR SINE MIR 32 249 -13 1258 132 16 5 chr12 4556816 4557006 -139229449 + AluJb SINE Alu 114 305 -7 375 230 52 37 chr12 4557040 4557175 -139229280 - MLT1J LTR MaLR -374 137 1 483 261 14 35 chr12 4557268 4557410 -139229045 + L2 LINE L2 3134 3272 0 329 288 44 12 chr12 4557906 4558066 -139228389 - MIR3 SINE MIR -8 200 36 254 259 40 52 chr12 4558738 4558839 -139227616 - MIR SINE MIR -101 107 8 275 290 103 13 chr12 4561409 4561564 -139224891 + L3b LINE CR1 1284 1452 -131 364 264 61 74 chr12 4562065 4562213 -139224242 - MIR SINE MIR -49 213 68 574 294 135 37 chr12 4562478 4562958 -139223497 + L2 LINE L2 2782 3312 -1 456 253 95 28 chr12 4564134 4564279 -139222176 - MIR SINE MIR -65 143 36 755 325 15 18 chr12 4564465 4564862 -139221593 - L2 LINE L2 0 3313 2918 309 208 202 22 chr12 4564965 4565143 -139221312 + L1ME2 LINE L1 5944 6153 -11 2122 104 4 0 chr12 4565145 4565446 -139221009 - AluSx SINE Alu 0 302 1 207 362 9 29 chr12 4565641 4565746 -139220709 + MIR SINE MIR 80 182 -80 2256 215 47 103 chr12 4566322 4567201 -139219254 + MER97a DNA MER1_type? 59 887 -7 2437 107 0 0 chr12 4567550 4567860 -139218595 + AluSx SINE Alu 1 310 -2 417 101 0 0 chr12 4567890 4567982 -139218473 + Alu SINE Alu 241 332 0 271 250 16 0 chr12 4569210 4569274 -139217181 - MIR SINE MIR -112 150 86 240 293 0 13 chr12 4569488 4569563 -139216892 - MIR SINE MIR -104 158 85 482 305 122 15 chr12 4569872 4570186 -139216269 - L1MC/D LINE L1 -333 5788 5443 2212 101 0 7 chr12 4570199 4570496 -139215959 + AluSx SINE Alu 6 300 -12 2260 119 0 0 chr12 4570513 4570815 -139215640 + AluSx SINE Alu 1 302 -10 2314 97 3 0 chr12 4571770 4572068 -139214387 - AluSx SINE Alu -13 299 1 879 232 0 0 chr12 4572645 4572809 -139213646 - FRAM SINE Alu -2 164 1 9244 208 69 24 chr12 4573354 4575425 -139211030 + L1M2 LINE L1 157 2319 -4530 333 203 0 0 chr12 4575772 4575831 -139210624 + MER2 DNA MER2_type 287 345 0 362 300 36 7 chr12 4575839 4575979 -139210476 + MIR3 SINE MIR 54 197 -11 6912 52 36 0 chr12 4578788 4579878 -139206577 - L1P2 LINE L1 -642 5512 4381 297 295 93 16 chr12 4580379 4580508 -139205947 - L2 LINE L2 0 3272 3134 375 230 52 37 chr12 4580600 4580735 -139205720 + MLT1J LTR MaLR 1 137 -374 1258 132 16 5 chr12 4580769 4580959 -139205496 - AluJb SINE Alu -7 305 114 183 162 0 0 chr12 4581740 4581777 -139204678 + (TTA)n Simple_repeat Simple_repeat 1 37 0 238 184 0 174 chr12 4584274 4584383 -139202072 - MIR SINE MIR -117 145 56 538 242 97 36 chr12 4584789 4585037 -139201418 + AluJo SINE Alu 3 265 -47 8201 97 32 2 chr12 4585320 4586583 -139199872 - L1P LINE L1 -3385 2761 1460 375 307 62 41 chr12 4586745 4586989 -139199466 - L2 LINE L2 -832 2482 2234 1416 266 70 33 chr12 4586997 4587547 -139198908 + MLT1L LTR MaLR 1 570 -18 264 122 0 0 chr12 4589790 4589831 -139196624 + (CA)n Simple_repeat Simple_repeat 2 42 0 2211 98 3 10 chr12 4590008 4590313 -139196142 - AluSc SINE Alu -6 303 1 565 120 11 0 chr12 4590314 4590406 -139196049 - L1MC3 LINE L1 -99 7686 7594 203 170 21 0 chr12 4591421 4591468 -139194987 + CT-rich Low_complexity Low_complexity 2 49 0 2456 56 13 0 chr12 4593733 4594036 -139192419 + AluY SINE Alu 1 307 -4 305 241 126 0 chr12 4594055 4594142 -139192313 - LTR10A LTR ERV1 -511 98 1 823 202 255 47 chr12 4594171 4594552 -139191903 - MER31B LTR ERV1 0 466 7 243 0 0 0 chr12 4595431 4595458 -139190997 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 125 0 0 chr12 4596857 4596897 -139189558 + (A)n Simple_repeat Simple_repeat 1 40 0 27 29 0 0 chr12 4597001 4597035 -139189420 + AT_rich Low_complexity Low_complexity 1 34 0 207 186 0 0 chr12 4597115 4597158 -139189297 + A-rich Low_complexity Low_complexity 2 44 0 242 188 29 58 chr12 4597836 4597905 -139188550 + L2 LINE L2 3229 3295 -18 21 0 0 0 chr12 4598381 4598402 -139188053 + AT_rich Low_complexity Low_complexity 1 21 0 2029 115 7 14 chr12 4599242 4599537 -139186918 - AluSx SINE Alu -19 293 1 2149 94 10 13 chr12 4600302 4600610 -139185845 + AluSp SINE Alu 6 312 -1 1212 189 50 12 chr12 4601433 4601692 -139184763 - MLT1A1 LTR MaLR -93 272 4 255 278 101 35 chr12 4601974 4602172 -139184283 - L1MEc LINE L1 -4815 1495 1285 505 300 101 51 chr12 4602190 4602237 -139184218 - L1MEc LINE L1 -4917 1202 1159 2235 118 3 0 chr12 4602237 4602543 -139183912 - AluSq SINE Alu -6 307 1 505 300 101 51 chr12 4602543 4602584 -139183871 - L1MEc LINE L1 -4960 1159 1121 1544 199 82 15 chr12 4602584 4602926 -139183529 + MLT1A1 LTR MaLR 1 365 0 505 300 101 51 chr12 4602926 4603423 -139183032 - L1MEc LINE L1 -4998 1121 587 513 32 0 0 chr12 4603653 4603716 -139182739 + (CA)n Simple_repeat Simple_repeat 1 63 0 1936 124 29 0 chr12 4604371 4604665 -139181790 - AluSx SINE Alu 0 303 2 39 38 0 0 chr12 4604797 4604850 -139181605 + AT_rich Low_complexity Low_complexity 1 53 0 2073 116 17 10 chr12 4605059 4605361 -139181094 + AluSx SINE Alu 5 308 -4 678 302 49 40 chr12 4605432 4605760 -139180695 + L1MEc LINE L1 398 728 -5993 12468 170 27 20 chr12 4605769 4605936 -139180519 + L1MA2 LINE L1 2915 3079 -3067 1832 123 11 0 chr12 4605936 4606205 -139180250 + AluSq SINE Alu 35 306 -7 12468 170 27 20 chr12 4606205 4608483 -139177972 + L1MA2 LINE L1 3079 5379 -767 737 62 0 0 chr12 4608485 4608581 -139177874 + L1PA5 LINE L1 1 96 -6050 11179 44 5 0 chr12 4608581 4611926 -139174529 + L1PA5 LINE L1 623 6134 -20 11179 38 6 0 chr12 4611926 4613967 -139172488 + L1PA5 LINE L1 4094 6147 -7 11179 44 5 0 chr12 4613967 4613982 -139172473 + L1PA5 LINE L1 6134 6147 -7 6285 112 19 7 chr12 4613981 4614908 -139171547 + L1MA2 LINE L1 5366 6304 0 * 2022 147 0 0 chr12 4615060 4615352 -139171103 + AluJb SINE Alu 1 292 -20 276 260 61 41 chr12 4615425 4615621 -139170834 + L1MEc LINE L1 1578 1777 -4944 261 278 48 8 chr12 4615671 4615791 -139170664 + L1MEc LINE L1 1844 1950 -4590 366 265 97 17 chr12 4616015 4616306 -139170149 + L1MEc LINE L1 805 1050 -5165 835 236 5 26 chr12 4616308 4616503 -139169952 - MER58A DNA MER1_type -2 222 32 2390 81 0 7 chr12 4616625 4616921 -139169534 - AluSc SINE Alu -13 296 3 529 304 117 16 chr12 4617375 4617692 -139168763 - L1ME LINE L1 -330 5791 5443 2375 95 0 3 chr12 4617705 4618011 -139168444 + AluSx SINE Alu 6 310 -2 2091 75 8 4 chr12 4620761 4621026 -139165429 + AluSg SINE Alu 1 266 -44 2207 112 7 3 chr12 4621932 4622237 -139164218 - AluSx SINE Alu -6 306 1 499 269 139 22 chr12 4622421 4622744 -139163711 - L1ME LINE L1 -1170 4976 4616 442 257 192 66 chr12 4622780 4623431 -139163024 - L2 LINE L2 -1 3312 2579 2030 155 6 26 chr12 4623609 4623958 -139162497 - L1MC1 LINE L1 0 6402 6061 2337 80 0 3 chr12 4625028 4625328 -139161127 + AluY SINE Alu 1 299 -12 1176 97 0 0 chr12 4625345 4625490 -139160965 + AluSq/x SINE Alu 1 145 -168 201 74 0 0 chr12 4625494 4625521 -139160934 + (A)n Simple_repeat Simple_repeat 1 27 0 1110 239 75 95 chr12 4625589 4626242 -139160213 - L1MC4 LINE L1 -1 8041 7402 1386 229 90 43 chr12 4626249 4626739 -139159716 - L1MC4 LINE L1 -779 7263 6751 2075 218 63 51 chr12 4626756 4627306 -139159149 - L1MC1 LINE L1 -351 5882 5340 342 67 0 0 chr12 4627306 4627351 -139159104 + (TG)n Simple_repeat Simple_repeat 2 46 0 2075 218 63 51 chr12 4627351 4627957 -139158498 - L1MC1 LINE L1 -893 5340 4713 * 5425 153 43 89 chr12 4627954 4628249 -139158206 - L1MC3 LINE L1 0 7785 7478 566 155 29 0 chr12 4628249 4628352 -139158103 - L1MB4 LINE L1 0 6180 6075 5425 153 43 89 chr12 4628352 4628367 -139158088 - L1MC3 LINE L1 -307 7478 7464 2576 141 20 0 chr12 4628367 4628764 -139157691 - L1MA5 LINE L1 -10 6290 5886 5425 153 43 89 chr12 4628764 4628943 -139157512 - L1MC3 LINE L1 -321 7464 7278 2333 93 10 6 chr12 4628943 4629255 -139157200 - AluSp SINE Alu 0 313 1 5425 153 43 89 chr12 4629255 4630034 -139156421 - L1MC3 LINE L1 -507 7278 6573 879 106 28 28 chr12 4630043 4630184 -139156271 - L1MC3 LINE L1 -1449 6336 6196 * 4483 250 124 40 chr12 4630173 4630469 -139155986 - L1MC1 LINE L1 -1480 4735 4465 315 0 0 0 chr12 4630469 4630504 -139155951 + (TG)n Simple_repeat Simple_repeat 2 36 0 4483 250 124 40 chr12 4630504 4630684 -139155771 - L1MC1 LINE L1 -1750 4465 4302 1613 172 104 3 chr12 4630684 4631010 -139155445 + MER46B DNA MER2_type 1 234 -2 4483 250 124 40 chr12 4631010 4631797 -139154658 - L1MC1 LINE L1 -1913 4302 3583 1815 135 7 14 chr12 4631797 4632085 -139154370 - AluSx SINE Alu -21 291 6 4483 250 124 40 chr12 4632085 4633319 -139153136 - L1MC1 LINE L1 -2632 3583 2073 957 191 0 0 chr12 4633325 4633482 -139152973 - AluSc SINE Alu -19 290 134 1367 285 126 36 chr12 4633494 4634384 -139152071 - L1MC1 LINE L1 -4318 2078 1109 2472 90 0 0 chr12 4635100 4635410 -139151045 + AluSg SINE Alu 1 310 0 23 0 0 0 chr12 4635666 4635689 -139150766 + AT_rich Low_complexity Low_complexity 1 23 0 288 0 0 0 chr12 4637177 4637209 -139149246 + (T)n Simple_repeat Simple_repeat 1 32 0 187 302 63 32 chr12 4638405 4638468 -139147987 + MIR SINE MIR 16 80 -182 391 211 79 53 chr12 4638615 4638729 -139147726 - L2 LINE L2 -9 3304 3188 330 333 19 28 chr12 4638894 4639002 -139147453 - MIR3 SINE MIR -25 183 77 3877 19 0 0 chr12 4639127 4639546 -139146909 + L1PA2 LINE L1 5737 6155 0 304 246 0 0 chr12 4639562 4639627 -139146828 + MIR SINE MIR 2 66 -196 225 341 16 39 chr12 4640426 4640555 -139145900 + L2 LINE L2 2970 3095 -177 2399 83 0 3 chr12 4641574 4641875 -139144580 + AluY SINE Alu 1 300 -11 323 262 220 42 chr12 4642250 4642418 -139144037 + MIR SINE MIR 36 233 -29 382 324 72 27 chr12 4642847 4643069 -139143386 + MIR SINE MIR 29 260 -2 1994 118 10 0 chr12 4643736 4644025 -139142430 - AluSx SINE Alu -20 292 1 2565 52 0 0 chr12 4644629 4644936 -139141519 - AluY SINE Alu -4 307 1 279 223 117 68 chr12 4645042 4645145 -139141310 + L2 LINE L2 3205 3312 -1 23 0 0 0 chr12 4645464 4645487 -139140968 + AT_rich Low_complexity Low_complexity 1 23 0 573 76 0 0 chr12 4645929 4646008 -139140447 + (TGGA)n Simple_repeat Simple_repeat 1 79 0 315 49 0 0 chr12 4646401 4646442 -139140013 + (CA)n Simple_repeat Simple_repeat 2 42 0 270 331 63 49 chr12 4647922 4648064 -139138391 - L2 LINE L2 -22 3250 3107 408 253 77 45 chr12 4648143 4648332 -139138123 - MIR SINE MIR -50 212 20 854 247 60 8 chr12 4648346 4648581 -139137874 - MIR SINE MIR -3 259 13 1767 106 31 91 chr12 4649353 4649673 -139136782 + AluSx SINE Alu 1 301 -11 433 302 54 27 chr12 4650193 4650342 -139136113 + MER5B DNA MER1_type 1 153 -25 1898 130 17 0 chr12 4651035 4651328 -139135127 + AluSx SINE Alu 1 298 -14 197 372 58 43 chr12 4651689 4651896 -139134559 - L3b LINE CR1 -34 1549 1340 208 181 69 35 chr12 4652356 4652472 -139133983 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 336 224 45 0 chr12 4652430 4652564 -139133891 + (TA)n Simple_repeat Simple_repeat 2 141 0 28 0 0 0 chr12 4652568 4652596 -139133859 + AT_rich Low_complexity Low_complexity 1 28 0 318 278 83 21 chr12 4652615 4652759 -139133696 - L1ME4a LINE L1 -180 5941 5789 194 276 0 11 chr12 4652854 4652941 -139133514 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 2363 117 6 0 chr12 4653722 4654072 -139132383 + L1PA16 LINE L1 5811 6162 -4 1469 163 48 7 chr12 4654380 4654650 -139131805 + L1MC2 LINE L1 6015 6295 -49 232 170 0 0 chr12 4654650 4654697 -139131758 + T-rich Low_complexity Low_complexity 1 47 0 1216 14 0 0 chr12 4654698 4654837 -139131618 - L1PA2 LINE L1 0 6155 6017 301 154 0 0 chr12 4654837 4654885 -139131570 + L1MC2 LINE L1 6282 6333 -11 452 101 29 0 chr12 4655110 4655179 -139131276 - Alu SINE Alu -243 75 5 24 77 0 0 chr12 4655179 4655231 -139131224 + AT_rich Low_complexity Low_complexity 1 52 0 219 263 53 79 chr12 4655276 4655390 -139131065 + MIR3 SINE MIR 83 193 -15 27 29 0 0 chr12 4655604 4655638 -139130817 + AT_rich Low_complexity Low_complexity 1 34 0 267 137 20 0 chr12 4656785 4656836 -139129619 - HSMAR1 DNA Mariner -2 1285 1234 30 0 0 0 chr12 4656854 4656884 -139129571 + AT_rich Low_complexity Low_complexity 1 30 0 2109 116 0 0 chr12 4656884 4657185 -139129270 + AluSx SINE Alu 5 305 -7 358 225 92 23 chr12 4657221 4657333 -139129122 - MIR SINE MIR -70 138 20 2394 52 0 0 chr12 4658251 4658541 -139127914 - AluY SINE Alu -21 290 1 474 285 79 15 chr12 4658831 4659036 -139127419 - MIR SINE MIR -41 221 4 291 28 0 0 chr12 4659390 4659426 -139127029 + (TG)n Simple_repeat Simple_repeat 2 37 0 592 286 91 9 chr12 4660047 4660267 -139126188 + MIR SINE MIR 6 243 -19 209 139 23 0 chr12 4660296 4660339 -139126116 + (TTG)n Simple_repeat Simple_repeat 2 45 0 228 276 53 13 chr12 4660432 4660508 -139125947 + L2 LINE L2 3235 3313 0 1971 72 0 82 chr12 4660829 4661208 -139125247 - AluSc SINE Alu 0 354 1 313 288 0 68 chr12 4661600 4661718 -139124737 - MIR SINE MIR -75 187 78 370 252 99 18 chr12 4661844 4661955 -139124500 + MIR SINE MIR 49 168 -94 675 314 93 64 chr12 4662105 4662555 -139123900 - L2 LINE L2 0 3272 2836 2305 90 0 0 chr12 4662555 4662856 -139123599 + AluSx SINE Alu 1 301 -11 675 314 93 64 chr12 4662856 4663574 -139122881 - L2 LINE L2 -436 2836 2070 494 315 128 0 chr12 4664266 4664517 -139121938 - L2 LINE L2 -1254 2060 1778 1537 161 46 18 chr12 4664791 4665076 -139121379 - AluJb SINE Alu -19 293 1 1852 151 0 0 chr12 4665216 4665494 -139120961 + AluSx SINE Alu 1 278 -34 24 0 0 0 chr12 4665946 4665970 -139120485 + AT_rich Low_complexity Low_complexity 1 24 0 2188 103 0 0 chr12 4666039 4666340 -139120115 + AluY SINE Alu 1 301 -10 1009 220 19 6 chr12 4666356 4666577 -139119878 - MSTD LTR MaLR -4 392 203 220 135 19 19 chr12 4666590 4666642 -139119813 + GA-rich Low_complexity Low_complexity 4 55 0 464 178 0 0 chr12 4666705 4666778 -139119677 - MSTD LTR MaLR -323 73 1 1972 219 62 85 chr12 4666778 4667688 -139118767 - HAL1b LINE L1 -89 1259 371 201 167 0 0 chr12 4667713 4667749 -139118706 - MIR SINE MIR -14 248 213 636 254 113 29 chr12 4667808 4668083 -139118372 - HAL1b LINE L1 -981 367 70 285 329 4 9 chr12 4668153 4668292 -139118163 + CT-rich Low_complexity Low_complexity 1 138 0 417 73 0 61 chr12 4668500 4668582 -139117873 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 2009 125 3 13 chr12 4668861 4669164 -139117291 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr12 4669165 4669185 -139117270 + (TA)n Simple_repeat Simple_repeat 1 20 0 743 284 192 22 chr12 4669193 4669552 -139116903 + MLT1H1 LTR MaLR 27 446 -109 6971 98 34 4 chr12 4670920 4671881 -139114574 + THE1B-int LTR MaLR 286 1282 -298 1319 94 94 47 chr12 4671882 4672095 -139114360 + AluY SINE Alu 72 294 -17 2470 77 0 3 chr12 4672095 4672406 -139114049 + THE1B-int LTR MaLR 1271 1580 0 2440 106 19 30 chr12 4672406 4672774 -139113681 + THE1B LTR MaLR 1 364 0 285 274 55 0 chr12 4673618 4673691 -139112764 - MIR SINE MIR -113 149 73 2220 97 0 10 chr12 4673851 4674159 -139112296 - AluSq SINE Alu -8 305 1 394 234 109 15 chr12 4674274 4674411 -139112044 - MLT1L LTR MaLR 0 615 466 273 243 118 5 chr12 4674412 4674500 -139111955 - MLT1L LTR MaLR -191 391 235 302 246 71 60 chr12 4674788 4674971 -139111484 - L1ME4a LINE L1 -9 6112 5928 22 0 0 0 chr12 4675030 4675052 -139111403 + AT_rich Low_complexity Low_complexity 1 22 0 1349 218 14 7 chr12 4675168 4675453 -139111002 - L1ME4a LINE L1 -338 5783 5497 296 300 25 21 chr12 4675503 4675623 -139110832 + MIR SINE MIR 2 114 -94 2181 98 0 0 chr12 4675667 4675962 -139110493 - AluSg SINE Alu -15 295 1 708 192 32 0 chr12 4676115 4676271 -139110184 - Charlie1b DNA MER1_type -9 514 354 1116 175 0 73 chr12 4676273 4676547 -139109908 + AluJb SINE Alu 40 293 -19 1504 176 119 0 chr12 4676558 4676870 -139109585 - Charlie1b DNA MER1_type -167 356 8 275 200 0 0 chr12 4676870 4676920 -139109535 + MLT1L LTR MaLR 156 205 -410 23 33 0 0 chr12 4677975 4678005 -139108450 + AT_rich Low_complexity Low_complexity 1 30 0 287 175 17 0 chr12 4678006 4678063 -139108392 - AluJ/FLAM SINE Alu -205 97 55 183 243 0 0 chr12 4678275 4678312 -139108143 - MIR3 SINE MIR -3 205 169 288 219 62 0 chr12 4679950 4680014 -139106441 + MIR SINE MIR 86 153 -55 430 195 37 137 chr12 4680031 4680221 -139106234 + MER5B DNA MER1_type 6 176 -2 194 298 0 0 chr12 4680860 4680907 -139105548 - MIR SINE MIR 0 262 216 210 293 0 0 chr12 4680909 4680991 -139105464 + T-rich Low_complexity Low_complexity 1 82 0 2120 114 20 0 chr12 4680997 4681303 -139105152 - AluSx SINE Alu 0 312 1 239 203 0 31 chr12 4681303 4681360 -139105095 - MIR SINE MIR -60 202 146 1458 185 124 43 chr12 4681360 4681706 -139104749 + MLT1A2 LTR MaLR 1 374 0 1900 133 3 7 chr12 4681707 4682009 -139104446 - AluJo SINE Alu -1 311 11 262 326 33 0 chr12 4682015 4682116 -139104339 - MIR SINE MIR -67 141 38 272 278 188 15 chr12 4682887 4683020 -139103435 - MIR SINE MIR -56 206 51 632 183 67 39 chr12 4683159 4683339 -139103116 - MER53 DNA DNA -4 185 1 882 129 232 178 chr12 4683486 4683796 -139102659 - LTR12 LTR ERV1 -228 486 153 2062 118 13 0 chr12 4683796 4684102 -139102353 - AluY SINE Alu -1 310 1 882 129 232 178 chr12 4684102 4684140 -139102315 - LTR12 LTR ERV1 -561 153 119 250 231 0 0 chr12 4684142 4684194 -139102261 - LTR30 LTR ERV1 -670 52 1 1541 223 3 0 chr12 4684247 4684570 -139101885 + L1MB3 LINE L1 5854 6177 -6 1343 210 93 110 chr12 4685468 4686229 -139100226 - MER20B DNA MER1_type 0 783 36 376 110 14 14 chr12 4686282 4686355 -139100100 + (TTTCC)n Simple_repeat Simple_repeat 2 74 0 2864 142 21 4 chr12 4686509 4686982 -139099473 + L1PB4 LINE L1 5662 6142 -14 1610 160 68 0 chr12 4687027 4687308 -139099147 - AluJb SINE Alu -12 300 1 284 285 0 80 chr12 4687356 4687493 -139098962 - MIR SINE MIR -51 211 86 301 309 22 37 chr12 4687582 4687718 -139098737 + L2 LINE L2 3180 3313 0 899 273 62 4 chr12 4687946 4688173 -139098282 - MIR SINE MIR -2 260 21 25 31 0 0 chr12 4688462 4688494 -139097961 + AT_rich Low_complexity Low_complexity 1 32 0 1509 141 32 25 chr12 4688497 4688781 -139097674 - L1MA5A LINE L1 -9 6288 6003 1960 160 0 0 chr12 4689642 4689948 -139096507 + AluSx SINE Alu 1 306 -6 218 211 21 42 chr12 4690346 4690441 -139096014 + C-rich Low_complexity Low_complexity 6 98 0 589 208 75 0 chr12 4690480 4690600 -139095855 - MER20 DNA MER1_type -90 129 1 1116 234 72 41 chr12 4690784 4691147 -139095308 + MLT1B LTR MaLR 6 379 -11 2215 103 33 0 chr12 4692104 4692406 -139094049 - AluSx SINE Alu 0 312 1 1859 106 41 24 chr12 4692592 4692734 -139093721 - AluSx SINE Alu -14 298 160 2756 123 38 131 chr12 4692734 4693345 -139093110 - MER41C LTR ERV1 0 554 1 1859 106 41 24 chr12 4693345 4693495 -139092960 - AluSx SINE Alu -152 160 1 813 181 0 0 chr12 4693497 4693630 -139092825 - FLAM_C SINE Alu -10 133 1 301 276 52 9 chr12 4693689 4693805 -139092650 + L1MC1 LINE L1 5883 6003 -330 885 194 0 0 chr12 4693860 4694020 -139092435 + AluJb SINE Alu 132 291 -21 242 157 146 79 chr12 4694060 4694149 -139092306 + L1MB8 LINE L1 6040 6134 -44 291 104 0 0 chr12 4694536 4694584 -139091871 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2231 82 4 0 chr12 4694584 4694864 -139091591 - AluSp SINE Alu -32 281 1 2259 100 0 19 chr12 4694867 4695176 -139091279 - AluSx SINE Alu -9 303 1 275 294 154 37 chr12 4695690 4695826 -139090629 + MER5A DNA MER1_type 33 184 -5 * 278 254 18 64 chr12 4695820 4695930 -139090525 + L2 LINE L2 3168 3272 0 2430 77 0 19 chr12 4696855 4697167 -139089288 - AluY SINE Alu -5 306 1 2521 67 0 0 chr12 4697554 4697853 -139088602 + AluY SINE Alu 1 299 -12 1668 158 53 11 chr12 4698834 4699119 -139087336 + AluJb SINE Alu 1 297 -15 211 279 109 73 chr12 4701749 4701914 -139084541 - MIR3 SINE MIR -5 203 33 232 320 39 16 chr12 4702002 4702130 -139084325 + MIR3 SINE MIR 13 143 -65 1768 114 5 152 chr12 4702344 4702739 -139083716 + MER1B DNA MER1_type 1 337 0 1690 158 31 17 chr12 4703545 4703836 -139082619 + AluJo SINE Alu 1 295 -17 467 331 6 0 chr12 4704256 4704413 -139082042 + MIR SINE MIR 78 235 -27 1140 262 108 48 chr12 4705308 4705697 -139080758 + L1MC4a LINE L1 5337 5770 -2038 2121 101 31 3 chr12 4705697 4705985 -139080470 + AluSc SINE Alu 11 306 -3 1140 262 108 48 chr12 4705985 4706152 -139080303 + L1MC4a LINE L1 5770 5926 -1882 206 245 0 0 chr12 4706866 4706919 -139079536 + T-rich Low_complexity Low_complexity 1 53 0 203 271 40 66 chr12 4708382 4708533 -139077922 - MIR3 SINE MIR -16 192 46 211 328 26 72 chr12 4710076 4710271 -139076184 - MER5A DNA MER1_type -3 186 1 271 282 0 0 chr12 4711149 4711227 -139075228 + MER69 DNA AcHobo 1 78 -99 531 267 23 8 chr12 4713697 4713828 -139072627 - MIR SINE MIR -106 156 24 519 271 94 6 chr12 4715380 4715550 -139070905 + MIR SINE MIR 21 205 -57 184 287 170 72 chr12 4718207 4718472 -139067983 + L2 LINE L2 2817 3107 -165 3689 271 44 28 chr12 4718876 4720149 -139066306 + L1MEc LINE L1 16 756 -5640 2155 130 3 3 chr12 4720149 4720457 -139065998 + AluSg SINE Alu 1 308 -2 3689 271 44 28 chr12 4720457 4720899 -139065556 + L1MEc LINE L1 756 1189 -5207 1931 213 29 17 chr12 4720885 4721298 -139065157 + L1MC1 LINE L1 5 422 -6004 * 2137 126 152 0 chr12 4721291 4721712 -139064743 + L1MC1 LINE L1 1035 1519 -4907 2040 156 160 76 chr12 4721719 4721864 -139064591 + MER39 LTR ERV1 20 151 -556 2131 113 0 3 chr12 4721864 4722147 -139064308 + AluSx SINE Alu 1 282 -30 2040 156 160 76 chr12 4722147 4722514 -139063941 + MER39 LTR ERV1 151 575 -132 883 118 69 0 chr12 4722516 4722660 -139063795 - L1MCa LINE L1 -4759 1667 1514 256 232 0 18 chr12 4722660 4722716 -139063739 - MER39 LTR ERV1 0 707 653 772 180 77 16 chr12 4722723 4722917 -139063538 + L1MC1 LINE L1 1977 2182 -4244 2398 97 0 3 chr12 4722917 4723227 -139063228 + AluSx SINE Alu 1 309 -3 794 183 0 15 chr12 4723242 4723379 -139063076 + FLAM_C SINE Alu 6 140 -3 11466 221 37 15 chr12 4723410 4725828 -139060627 + L1MC1 LINE L1 2170 4533 -2080 2296 80 3 10 chr12 4725828 4726116 -139060339 + AluSq SINE Alu 9 294 -19 11466 221 37 15 chr12 4726116 4727469 -139058986 + L1MC1 LINE L1 4533 6056 -557 2273 107 3 0 chr12 4727469 4727768 -139058687 + AluSg SINE Alu 1 300 -10 11466 221 37 15 chr12 4727768 4728322 -139058133 + L1MC1 LINE L1 6056 6596 -17 365 255 49 11 chr12 4728346 4728472 -139057983 + L1ME1 LINE L1 1500 1728 -4916 2305 59 52 0 chr12 4728508 4728798 -139057657 + AluY SINE Alu 1 305 -6 2682 182 31 2 chr12 4728890 4729406 -139057049 - L1MA6 LINE L1 0 6300 5770 2161 253 150 15 chr12 4729409 4729421 -139057034 + L1ME1 LINE L1 1874 1883 -4761 2212 69 4 7 chr12 4729421 4729696 -139056759 + AluSc SINE Alu 33 306 -3 2161 253 150 15 chr12 4729696 4730921 -139055534 + L1ME1 LINE L1 1883 3225 -3419 * 2929 221 95 34 chr12 4730919 4731124 -139055331 + L1ME1 LINE L1 4028 4219 -2425 2432 66 0 26 chr12 4731124 4731428 -139055027 - AluY SINE Alu -15 296 1 2929 221 95 34 chr12 4731428 4732142 -139054313 + L1ME1 LINE L1 4219 5003 -1641 1078 229 16 12 chr12 4732152 4732401 -139054054 + MLT2D LTR ERVL 1 250 -164 5726 143 6 28 chr12 4732444 4732766 -139053689 + L1MA6 LINE L1 5469 5796 -1002 200 35 35 0 chr12 4732766 4732795 -139053660 + (CAA)n Simple_repeat Simple_repeat 1 30 0 5726 143 6 28 chr12 4732795 4733724 -139052731 + L1MA6 LINE L1 5796 6692 -106 3117 236 33 11 chr12 4733729 4734490 -139051965 + L1MB7 LINE L1 5407 6184 0 818 251 144 0 chr12 4734501 4734772 -139051683 + L1ME1 LINE L1 5114 5423 -1221 1310 205 27 67 chr12 4734780 4735151 -139051304 + MLT1D LTR MaLR 1 356 -149 2886 213 72 57 chr12 4735152 4735275 -139051180 + L1ME1 LINE L1 5555 5675 -989 189 0 0 0 chr12 4735275 4735296 -139051159 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1837 167 0 0 chr12 4735299 4735581 -139050874 - AluSx SINE Alu -30 282 1 2886 213 72 57 chr12 4735581 4736550 -139049905 + L1ME1 LINE L1 5676 6661 -3 250 320 105 32 chr12 4736786 4737005 -139049450 - L3 LINE CR1 -23 1554 1320 213 301 41 0 chr12 4737335 4737408 -139049047 + L3 LINE CR1 1486 1561 -16 453 252 202 38 chr12 4737506 4737768 -139048687 + MLT1L LTR MaLR 311 615 0 2331 188 62 10 chr12 4737845 4738357 -139048098 + MLT1F LTR MaLR 4 542 0 950 242 0 0 chr12 4738672 4738850 -139047605 + MER58A DNA MER1_type 1 178 -46 194 150 25 0 chr12 4739122 4739162 -139047293 + CT-rich Low_complexity Low_complexity 2 42 0 219 69 0 0 chr12 4739258 4739287 -139047168 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 239 0 0 chr12 4739803 4739849 -139046606 - L2 LINE L2 -88 3184 3139 5461 158 52 61 chr12 4740792 4742149 -139044306 + L1MA8 LINE L1 4187 5535 -743 2455 157 35 27 chr12 4742153 4742748 -139043707 + L1MA8 LINE L1 5683 6280 -11 566 275 185 18 chr12 4742913 4743135 -139043320 - MIR SINE MIR 0 262 4 661 125 19 0 chr12 4743601 4743720 -139042735 + L1MB7 LINE L1 6053 6174 0 240 295 63 53 chr12 4744056 4744151 -139042304 + L2 LINE L2 3160 3255 -17 358 293 169 38 chr12 4744853 4745119 -139041336 - L2 LINE L2 -20 3252 2952 896 253 0 10 chr12 4745193 4745391 -139041064 + MER58A DNA MER1_type 1 196 -28 1970 213 89 38 chr12 4745870 4747160 -139039295 - L1MDb LINE L1 -4227 2179 771 519 303 156 45 chr12 4747420 4747773 -139038682 + L2 LINE L2 2920 3311 -2 235 330 45 0 chr12 4747969 4748057 -139038398 - MIR SINE MIR -111 151 60 372 276 86 32 chr12 4748062 4748404 -139038051 - L1MEc LINE L1 -892 1684 1268 691 269 51 76 chr12 4748412 4748724 -139037731 + L1ME1 LINE L1 4947 5265 -901 2122 125 0 0 chr12 4748724 4749013 -139037442 + AluSg SINE Alu 1 289 -21 691 269 51 76 chr12 4749013 4749132 -139037323 + L1ME1 LINE L1 5265 5386 -780 2355 98 7 0 chr12 4749132 4749439 -139037016 + AluSx SINE Alu 2 310 -2 691 269 51 76 chr12 4749439 4749956 -139036499 + L1ME1 LINE L1 5386 5867 -299 1410 225 137 63 chr12 4750127 4750638 -139035817 + MLT1H LTR MaLR 1 549 0 278 127 13 38 chr12 4751667 4751746 -139034709 + GA-rich Low_complexity Low_complexity 3 79 0 564 260 106 41 chr12 4751747 4751993 -139034462 - MIR SINE MIR 0 262 1 2566 244 16 4 chr12 4752295 4752856 -139033599 + MER82 DNA MER2_type 1 568 -85 384 221 0 0 chr12 4752967 4753044 -139033411 + MER82 DNA MER2_type 577 653 0 1087 168 35 0 chr12 4754749 4754951 -139031504 + MER2 DNA MER2_type 1 209 -136 21 57 0 0 chr12 4757151 4757186 -139029269 + AT_rich Low_complexity Low_complexity 1 35 0 1778 156 72 46 chr12 4759089 4759140 -139027315 - Charlie1b DNA MER1_type -2240 521 473 686 213 8 0 chr12 4759140 4759262 -139027193 + FLAM_A SINE Alu 1 123 -10 1778 156 72 46 chr12 4759262 4759626 -139026829 - Charlie1b DNA MER1_type -2288 473 95 201 369 54 39 chr12 4760465 4760595 -139025860 + L2 LINE L2 3137 3268 -4 2280 91 0 0 chr12 4761017 4761322 -139025133 + AluSx SINE Alu 1 305 0 21 0 0 0 chr12 4761424 4761445 -139025010 + AT_rich Low_complexity Low_complexity 1 21 0 2963 220 39 8 chr12 4761480 4762220 -139024235 - L1M4 LINE L1 -930 5216 4454 23 0 0 0 chr12 4763145 4763168 -139023287 + AT_rich Low_complexity Low_complexity 1 23 0 1884 225 115 42 chr12 4764155 4764728 -139021727 + L1ME3A LINE L1 5556 6170 0 1886 109 7 59 chr12 4765871 4766175 -139020280 - MER1B DNA MER1_type 0 339 52 576 208 9 0 chr12 4766395 4766501 -139019954 - FLAM_A SINE Alu -18 124 18 183 295 0 0 chr12 4766995 4767073 -139019382 + GA-rich Low_complexity Low_complexity 3 80 0 216 0 0 0 chr12 4767852 4767876 -139018579 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2160 107 0 0 chr12 4767876 4768157 -139018298 - AluSc SINE Alu -28 281 1 1090 291 156 29 chr12 4768161 4768583 -139017872 + L2 LINE L2 2329 2696 -617 3502 116 27 12 chr12 4768583 4769101 -139017354 + MER1A DNA MER1_type 1 526 -1 1090 291 156 29 chr12 4769101 4769563 -139016892 + L2 LINE L2 2696 3313 0 420 288 51 24 chr12 4770466 4770659 -139015796 + MIR SINE MIR 16 218 -44 25 51 0 0 chr12 4770716 4770755 -139015700 + AT_rich Low_complexity Low_complexity 1 39 0 438 78 47 0 chr12 4821633 4821697 -138964758 + LTR56 LTR ERV1 262 328 -117 248 247 123 0 chr12 4822000 4822073 -138964382 + MIR SINE MIR 133 214 -48 586 260 49 29 chr12 4822136 4822340 -138964115 + Charlie8 DNA MER1_type 16 223 -2194 1103 175 200 66 chr12 4822371 4822736 -138963719 - LTR37A LTR ERV1 -1 425 12 267 234 182 0 chr12 4823511 4823588 -138962867 - L2 LINE L2 -2 3311 3221 1001 88 0 0 chr12 4823611 4823736 -138962719 - AluJb SINE Alu -187 125 1 855 107 25 0 chr12 4823807 4823928 -138962527 + MSTB1 LTR MaLR 309 432 0 1427 175 66 84 chr12 4824121 4824185 -138962270 + MER67C LTR ERV1 3 67 -575 2594 155 47 0 chr12 4824185 4824591 -138961864 - MSTA LTR MaLR -3 425 1 1427 175 66 84 chr12 4824591 4824918 -138961537 + MER67C LTR ERV1 67 408 -234 234 313 125 18 chr12 4825264 4825376 -138961079 + MIR SINE MIR 24 147 -115 808 233 56 23 chr12 4825463 4825678 -138960777 - MIR SINE MIR -1 261 40 207 0 0 0 chr12 4826001 4826024 -138960431 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1851 121 0 24 chr12 4826026 4826316 -138960139 - AluSg SINE Alu -27 283 1 5575 42 8 2 chr12 4826800 4827439 -138959016 + SVA Other Other 744 1386 0 1181 167 68 4 chr12 4827521 4827755 -138958700 + L1MA4 LINE L1 6043 6291 -9 477 275 15 8 chr12 4827968 4828099 -138958356 - MER5A DNA MER1_type -3 186 55 214 284 49 39 chr12 4828022 4828124 -138958331 + MER5A DNA MER1_type 69 171 -18 * 518 211 124 103 chr12 4828135 4828241 -138958214 - MER5A DNA MER1_type 0 189 76 1741 164 20 13 chr12 4828241 4828540 -138957915 - AluJo SINE Alu -11 301 1 518 211 124 103 chr12 4828540 4828618 -138957837 - MER5A DNA MER1_type -113 76 1 190 343 45 0 chr12 4828763 4828830 -138957625 - MIR SINE MIR -70 138 69 23 0 0 0 chr12 4829185 4829208 -138957247 + AT_rich Low_complexity Low_complexity 1 23 0 714 286 87 49 chr12 4830886 4831355 -138955100 - L2 LINE L2 -1343 1971 1485 799 195 0 0 chr12 4832121 4832249 -138954206 - FLAM_A SINE Alu -4 129 2 185 282 218 9 chr12 4832736 4832846 -138953609 + L2 LINE L2 1838 1970 -1344 * 395 246 55 0 chr12 4832844 4832954 -138953501 - L2 LINE L2 -5 3308 3193 366 218 0 39 chr12 4833276 4833354 -138953101 + L2 LINE L2 3239 3313 0 931 167 0 0 chr12 4833546 4833678 -138952777 - FLAM_A SINE Alu 0 133 2 1561 159 4 30 chr12 4833683 4833954 -138952501 - AluJo SINE Alu -48 264 1 259 232 203 22 chr12 4834605 4834743 -138951712 - L1ME4a LINE L1 -3 6118 5956 672 274 88 9 chr12 4834785 4835103 -138951352 - L1ME4a LINE L1 -234 5887 5545 37 52 0 0 chr12 4835115 4835173 -138951282 + AT_rich Low_complexity Low_complexity 1 58 0 251 180 126 63 chr12 4835215 4835326 -138951129 - L1ME4a LINE L1 -2336 5472 5355 1185 290 133 51 chr12 4836280 4837194 -138949261 + L2 LINE L2 1008 1996 -1318 3432 212 73 13 chr12 4837326 4838419 -138948036 - L1MB8 LINE L1 -14 6164 5009 25900 92 25 20 chr12 4838445 4844792 -138941663 - L1PA7 LINE L1 0 6469 7 1516 234 133 6 chr12 4844807 4845467 -138940988 - L1MB8 LINE L1 -1123 5023 4259 197 182 247 13 chr12 4846722 4846799 -138939656 - MER5B DNA MER1_type 0 178 84 269 158 35 0 chr12 4847065 4847122 -138939333 + GA-rich Low_complexity Low_complexity 4 62 0 282 183 17 0 chr12 4847400 4847460 -138938995 + MER116 DNA Mariner 1 61 -19 932 176 69 5 chr12 4847467 4847655 -138938800 + MER20 DNA MER1_type 20 219 0 617 286 59 79 chr12 4847661 4848043 -138938412 + L2 LINE L2 2903 3272 0 189 132 0 0 chr12 4848868 4848906 -138937549 + (T)n Simple_repeat Simple_repeat 1 38 0 2371 94 0 0 chr12 4848929 4849226 -138937229 + AluSg SINE Alu 1 297 -13 4164 170 38 31 chr12 4849237 4849407 -138937048 + L1MB2 LINE L1 4383 4550 -1621 936 174 214 86 chr12 4849407 4849758 -138936697 + MSTD LTR MaLR 1 396 0 4164 170 38 31 chr12 4849758 4850635 -138935820 + L1MB2 LINE L1 4550 5449 -722 1541 190 34 17 chr12 4850635 4850930 -138935525 + AluJo SINE Alu 2 301 -11 4164 170 38 31 chr12 4850930 4851620 -138934835 + L1MB2 LINE L1 5449 6132 -39 1386 181 47 4 chr12 4851618 4851894 -138934561 - MLT-int LTR MaLR -76 1659 1372 * 294 312 0 0 chr12 4851954 4852031 -138934424 - MLT-int LTR MaLR -373 1362 1286 279 261 0 0 chr12 4852244 4852309 -138934146 - MLT-int LTR MaLR -993 742 678 2294 193 11 11 chr12 4852421 4852893 -138933562 - MLT1B-int LTR MaLR -640 731 260 708 123 9 0 chr12 4852884 4852998 -138933457 - MLT1B-int LTR MaLR -1256 115 1 * 1539 196 33 48 chr12 4853002 4853394 -138933061 - MLT1B LTR MaLR -4 386 1 225 108 0 0 chr12 4853395 4853432 -138933023 + L1MB3 LINE L1 6140 6176 -7 1404 146 3 24 chr12 4853537 4853822 -138932633 + L1MC2 LINE L1 5785 6062 -282 301 189 122 14 chr12 4853827 4853901 -138932554 - MIR SINE MIR -107 101 20 2536 323 78 44 chr12 4854663 4856399 -138930056 + L2 LINE L2 564 2371 -943 845 230 17 0 chr12 4856399 4856573 -138929882 - MER5B DNA MER1_type -1 177 1 2536 323 78 44 chr12 4856573 4856733 -138929722 + L2 LINE L2 2371 2524 -790 326 318 0 12 chr12 4856782 4856867 -138929588 + L2 LINE L2 3230 3313 0 864 138 0 36 chr12 4857849 4857987 -138928468 + FLAM_C SINE Alu 1 133 0 26 50 0 0 chr12 4857987 4858027 -138928428 + AT_rich Low_complexity Low_complexity 1 40 0 233 325 12 36 chr12 4858248 4858331 -138928124 - L2 LINE L2 -5 3267 3187 213 264 14 42 chr12 4858673 4858745 -138927710 - L3 LINE CR1 -600 977 908 249 292 0 0 chr12 4859679 4859744 -138926711 + GA-rich Low_complexity Low_complexity 3 67 0 341 269 213 6 chr12 4859881 4860041 -138926414 + MIR SINE MIR 29 221 -41 405 238 57 8 chr12 4860799 4860921 -138925534 - MER20B DNA MER1_type -591 192 65 1455 136 136 7 chr12 4861119 4861405 -138925050 - MER33 DNA MER1_type -1 323 1 1140 220 5 0 chr12 4861413 4861631 -138924824 + MER58A DNA MER1_type 1 219 -5 820 307 98 9 chr12 4863231 4863547 -138922908 - L3 LINE CR1 -63 1514 1171 248 291 9 64 chr12 4863935 4864045 -138922410 - MIR SINE MIR -1 261 158 1861 293 181 20 chr12 4864061 4865070 -138921385 - L2 LINE L2 -1220 2094 923 280 270 90 0 chr12 4865072 4865161 -138921294 + MIR SINE MIR 160 256 -6 219 357 83 0 chr12 4865236 4865320 -138921135 - L2 LINE L2 -36 3236 3146 * 267 262 12 24 chr12 4865316 4865400 -138921055 + MIR SINE MIR 180 262 0 29 28 0 0 chr12 4865569 4865605 -138920850 + AT_rich Low_complexity Low_complexity 1 36 0 205 283 0 0 chr12 4865656 4865709 -138920746 + MIR SINE MIR 210 262 0 185 313 75 0 chr12 4866267 4866334 -138920121 + MIR SINE MIR 191 262 0 310 364 29 17 chr12 4866515 4866688 -138919767 - MER5B DNA MER1_type -3 175 1 279 274 97 9 chr12 4867056 4867169 -138919286 - MIR SINE MIR -56 206 84 311 309 111 37 chr12 4867804 4867966 -138918489 - MIR3 SINE MIR -14 194 21 517 276 167 14 chr12 4868131 4868352 -138918103 + L2 LINE L2 2896 3150 -163 826 171 0 0 chr12 4869218 4869347 -138917108 - FLAM_C SINE Alu -3 130 2 279 295 162 46 chr12 4869350 4869523 -138916932 + MIR SINE MIR 20 212 -50 311 197 70 14 chr12 4869585 4869656 -138916799 - MIR3 SINE MIR -7 201 127 2338 93 7 3 chr12 4869656 4869956 -138916499 + AluSx SINE Alu 1 301 -11 2085 114 17 3 chr12 4870060 4870349 -138916106 - AluSx SINE Alu -18 294 2 1232 113 149 9 chr12 4870939 4871368 -138915087 + MER1A DNA MER1_type 1 533 0 2007 138 3 7 chr12 4871812 4872109 -138914346 - AluSx SINE Alu -16 296 1 210 216 0 39 chr12 4872655 4872706 -138913749 - L2 LINE L2 -2 3311 3263 301 300 12 0 chr12 4873174 4873254 -138913201 + MIR3 SINE MIR 109 189 -19 209 321 103 38 chr12 4873885 4874069 -138912386 - L2 LINE L2 0 3313 3118 1079 99 31 31 chr12 4875268 4875430 -138911025 + AluSq SINE Alu 44 205 -108 667 145 73 0 chr12 4875552 4875676 -138910779 + AluSg/x SINE Alu 175 307 -2 494 312 0 48 chr12 4875787 4875973 -138910482 + MER5B DNA MER1_type 2 178 0 3162 57 0 37 chr12 4876570 4876623 -138909832 + L1PA6 LINE L1 5735 5788 -366 2561 68 0 0 chr12 4876623 4876934 -138909521 + AluY SINE Alu 1 311 0 3162 57 0 37 chr12 4876934 4877316 -138909139 + L1PA6 LINE L1 5788 6154 0 190 324 15 15 chr12 4877774 4877842 -138908613 - L2 LINE L2 -850 2464 2397 225 235 0 39 chr12 4878264 4878315 -138908140 - L2 LINE L2 -1 3271 3223 198 138 15 62 chr12 4878855 4878920 -138907535 + (TA)n Simple_repeat Simple_repeat 2 63 0 217 235 20 0 chr12 4879078 4879129 -138907326 - L2 LINE L2 -1 3312 3261 405 196 82 44 chr12 4879132 4879290 -138907165 - LTR41 LTR ERVL -6 767 604 499 159 104 99 chr12 4879387 4879569 -138906886 - LTR41 LTR ERVL -590 183 1 1805 169 21 0 chr12 4879693 4879983 -138906472 + AluJo SINE Alu 1 296 -16 35 24 0 0 chr12 4883426 4883468 -138902987 + AT_rich Low_complexity Low_complexity 1 42 0 726 153 48 16 chr12 4883468 4883592 -138902863 - AluJb SINE Alu -183 129 2 2474 80 0 0 chr12 4883799 4884110 -138902345 + AluY SINE Alu 1 311 0 293 266 39 34 chr12 4884507 4884714 -138901741 - MER31-int LTR ERV1 -3050 1886 1679 430 204 8 15 chr12 4884856 4884988 -138901467 - MER31-int LTR ERV1 -3494 1442 1312 207 69 0 0 chr12 4885116 4885145 -138901310 + (TG)n Simple_repeat Simple_repeat 1 29 0 1249 182 176 6 chr12 4885766 4886118 -138900337 - LTR37A LTR ERV1 -2 424 13 216 0 0 0 chr12 4886251 4886275 -138900180 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 680 313 39 27 chr12 4886294 4886550 -138899905 + MIR SINE MIR 2 260 -2 2105 52 4 0 chr12 4887095 4887366 -138899089 - L1PA13 LINE L1 -5 6158 5887 1035 93 0 7 chr12 4887366 4887517 -138898938 + L1PA13 LINE L1 5734 5883 -280 984 280 4 30 chr12 4887547 4887815 -138898640 + MIR SINE MIR 2 262 0 267 147 27 13 chr12 4890985 4891060 -138895395 + CT-rich Low_complexity Low_complexity 1 76 0 587 243 158 7 chr12 4891374 4891526 -138894929 + MER5A DNA MER1_type 3 177 -12 432 0 0 0 chr12 4892374 4892422 -138894033 + (CA)n Simple_repeat Simple_repeat 2 49 0 25 0 0 0 chr12 4892432 4892457 -138893998 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr12 4892500 4892521 -138893934 + AT_rich Low_complexity Low_complexity 1 21 0 882 285 118 23 chr12 4892546 4892976 -138893479 - L1ME LINE L1 -327 5794 5406 5604 129 12 3 chr12 4892976 4894690 -138891765 - L1PA14 LINE L1 -2 6159 4409 882 285 118 23 chr12 4894690 4894986 -138891469 - L1ME LINE L1 -715 5406 5028 7414 133 56 2 chr12 4894986 4896154 -138890301 - Tigger3b DNA MER2_type 0 1231 1 882 285 118 23 chr12 4896154 4896231 -138890224 - L1ME LINE L1 -1093 5028 4960 2224 73 52 0 chr12 4896243 4896529 -138889926 - AluSg SINE Alu -9 301 1 407 247 77 29 chr12 4896552 4896722 -138889733 - L1ME LINE L1 -1314 4832 4655 2406 200 44 68 chr12 4896732 4897157 -138889298 - L1MB7 LINE L1 -192 6386 5952 1839 154 13 7 chr12 4897157 4897462 -138888993 - AluJo SINE Alu -5 307 1 2406 200 44 68 chr12 4897462 4897980 -138888475 - L1MB7 LINE L1 -626 5952 5478 1037 205 68 0 chr12 4897980 4898185 -138888270 + MER20 DNA MER1_type 1 219 0 2406 200 44 68 chr12 4898185 4898427 -138888028 - L1MB7 LINE L1 -1100 5478 5232 3891 223 66 42 chr12 4898430 4898970 -138887485 - L1MB7 LINE L1 -3816 2724 2198 2242 114 3 0 chr12 4898970 4899268 -138887187 - AluSx SINE Alu -13 299 1 3891 223 66 42 chr12 4899268 4900167 -138886288 - L1MB7 LINE L1 -4342 2198 1246 333 287 155 0 chr12 4900373 4900502 -138885953 + MIR3 SINE MIR 58 206 -2 574 294 57 40 chr12 4902424 4902672 -138883783 + MLT1K LTR MaLR 330 581 -7 814 291 87 4 chr12 4903343 4903573 -138882882 - MIR SINE MIR -12 250 2 541 312 42 39 chr12 4904584 4904917 -138881538 - L3 LINE CR1 -1 1576 1243 349 314 8 8 chr12 4905082 4905206 -138881249 - L3 LINE CR1 -653 924 801 304 238 152 29 chr12 4905653 4905758 -138880697 - MIR3 SINE MIR -9 199 82 247 312 52 0 chr12 4906166 4906243 -138880212 + MIR SINE MIR 65 145 -117 238 356 20 27 chr12 4907313 4907462 -138878993 - MER5A DNA MER1_type -2 187 40 * 254 359 26 39 chr12 4907335 4907491 -138878964 + MER5A DNA MER1_type 36 189 0 204 345 18 0 chr12 4909535 4909590 -138876865 - MIR SINE MIR -123 85 30 291 261 232 22 chr12 4910125 4910263 -138876192 - MIR3 SINE MIR -36 172 6 1640 215 118 68 chr12 4910289 4910393 -138876062 + Charlie2b DNA MER1_type 1462 1559 -1303 362 19 0 39 chr12 4910393 4910445 -138876010 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 1640 215 118 68 chr12 4910445 4911530 -138874925 + Charlie2b DNA MER1_type 1559 2754 -28 189 0 0 0 chr12 4911532 4911553 -138874902 + (CAA)n Simple_repeat Simple_repeat 1 21 0 854 256 35 0 chr12 4912583 4912786 -138873669 - MIR SINE MIR -24 238 29 249 268 0 37 chr12 4914363 4914445 -138872010 + A-rich Low_complexity Low_complexity 2 80 0 315 0 0 0 chr12 4914827 4914862 -138871593 + (CA)n Simple_repeat Simple_repeat 2 36 0 32 0 0 0 chr12 4914937 4914969 -138871486 + AT_rich Low_complexity Low_complexity 1 32 0 450 265 201 31 chr12 4914985 4915497 -138870958 - L1ME4a LINE L1 -11 6110 5520 352 256 13 0 chr12 4915590 4915668 -138870787 + MER21B LTR ERV1 12 90 -773 1588 235 145 9 chr12 4915690 4916124 -138870331 + MER21B LTR ERV1 19 511 -352 368 274 142 0 chr12 4916307 4916420 -138870035 + L2 LINE L2 3137 3265 -7 422 291 20 33 chr12 4916730 4916881 -138869574 - MIR3 SINE MIR -13 195 47 216 297 0 14 chr12 4917081 4917155 -138869300 + L2 LINE L2 2978 3050 -222 198 0 0 0 chr12 4917446 4917468 -138868987 + (A)n Simple_repeat Simple_repeat 1 22 0 361 320 122 12 chr12 4918132 4918379 -138868076 - Charlie8 DNA MER1_type -2143 274 1 828 179 8 0 chr12 4918521 4918644 -138867811 - FLAM_C SINE Alu -9 124 1 2112 98 0 80 chr12 4918655 4918981 -138867474 - AluSx SINE Alu -12 300 1 356 315 139 12 chr12 4920833 4920998 -138865457 + MIR3 SINE MIR 16 201 -7 340 305 21 0 chr12 4921295 4921390 -138865065 + MIR3 SINE MIR 90 186 -22 183 278 0 0 chr12 4921685 4921721 -138864734 + L2 LINE L2 3103 3138 -134 1972 115 40 0 chr12 4922215 4922493 -138863962 + AluSq SINE Alu 1 289 -24 226 271 29 14 chr12 4922574 4922644 -138863811 + Charlie4 DNA MER1_type 1888 1958 -3 367 236 292 14 chr12 4922683 4922827 -138863628 + MER5A DNA MER1_type 4 187 -2 258 181 138 60 chr12 4923884 4924000 -138862455 + L3 LINE CR1 793 917 -660 609 279 94 35 chr12 4924256 4924575 -138861880 + L3 LINE CR1 1043 1380 -197 2027 229 122 18 chr12 4924767 4925388 -138861067 + MER76 LTR ERV 3 688 0 582 274 28 22 chr12 4926603 4926782 -138859673 + MIR SINE MIR 48 227 -35 191 187 55 66 chr12 4926795 4926886 -138859569 - L3b LINE CR1 -171 1412 1323 3808 107 71 0 chr12 4926968 4927520 -138858935 + L1MA2 LINE L1 5714 6304 0 916 199 0 11 chr12 4928505 4928686 -138857769 + FRAM SINE Alu 1 171 -5 275 232 0 0 chr12 4928709 4928765 -138857690 - MER113 DNA MER1_type? -462 59 4 614 254 129 0 chr12 4929683 4929876 -138856579 + MIR SINE MIR 6 223 -39 345 24 0 0 chr12 4929991 4930033 -138856422 + (TG)n Simple_repeat Simple_repeat 2 43 0 1481 152 118 37 chr12 4930531 4930801 -138855654 - AluJo SINE Alu -6 296 5 3218 28 3 0 chr12 4930956 4931315 -138855140 - L1PA4 LINE L1 -8 6147 5788 2565 63 0 0 chr12 4931884 4932186 -138854269 + AluY SINE Alu 1 302 -9 185 216 0 39 chr12 4932382 4932433 -138854022 - L3 LINE CR1 -3 1574 1526 * 220 221 39 78 chr12 4932421 4932498 -138853957 - L2 LINE L2 0 3272 3199 262 224 79 26 chr12 4932505 4932581 -138853874 + MER5A DNA MER1_type 108 187 -2 1295 100 0 0 chr12 4933044 4933214 -138853241 + AluSq SINE Alu 1 170 -143 711 162 0 0 chr12 4933498 4933603 -138852852 + AluSg/x SINE Alu 178 282 -30 327 104 0 0 chr12 4934252 4934300 -138852155 + (CATTT)n Simple_repeat Simple_repeat 3 50 0 2166 65 25 4 chr12 4934300 4934577 -138851878 - AluSp SINE Alu -30 283 1 1576 127 4 0 chr12 4934694 4934923 -138851532 + Tigger4(Zombi) DNA MER2_type 2502 2731 0 235 204 0 20 chr12 4934952 4935001 -138851454 + GA-rich Low_complexity Low_complexity 2 49 0 385 329 48 6 chr12 4936665 4936832 -138849623 - MIR3 SINE MIR -28 180 7 233 266 62 0 chr12 4937118 4937182 -138849273 + L2 LINE L2 2933 3000 -313 211 284 189 24 chr12 4937367 4937406 -138849049 + L2 LINE L2 3084 3115 -157 2377 92 3 0 chr12 4937406 4937744 -138848711 - AluSc SINE Alu 0 309 1 211 284 189 24 chr12 4937744 4937831 -138848624 + L2 LINE L2 3115 3231 -41 301 313 9 35 chr12 4937907 4938022 -138848433 + MIR SINE MIR 20 131 -131 567 258 58 111 chr12 4938037 4938604 -138847851 + L1MC2 LINE L1 700 1236 -4883 231 286 202 0 chr12 4938571 4938739 -138847716 + L1M4 LINE L1 4998 5199 -930 * 5583 188 36 16 chr12 4938744 4939370 -138847085 + L1MC2 LINE L1 4271 4883 -1444 694 203 31 8 chr12 4939370 4939498 -138846957 + FLAM_A SINE Alu 1 131 -2 5583 188 36 16 chr12 4939498 4940868 -138845587 + L1MC2 LINE L1 4883 6307 -20 1012 278 33 68 chr12 4940849 4941130 -138845325 + L1ME LINE L1 5166 5455 -723 * 2116 108 0 11 chr12 4941130 4941416 -138845039 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr12 4941416 4941439 -138845016 + (CA)n Simple_repeat Simple_repeat 2 24 0 1012 278 33 68 chr12 4941439 4941719 -138844736 + L1ME LINE L1 5454 5700 -478 2011 131 0 7 chr12 4941719 4942010 -138844445 + AluSx SINE Alu 1 289 -23 1012 278 33 68 chr12 4942010 4942110 -138844345 + L1ME LINE L1 5700 5802 -376 2419 84 0 0 chr12 4942486 4942795 -138843660 - AluY SINE Alu -2 309 1 21 0 0 0 chr12 4942876 4942897 -138843558 + AT_rich Low_complexity Low_complexity 1 21 0 305 307 0 40 chr12 4942957 4943058 -138843397 + MIR SINE MIR 56 152 -110 200 292 143 6 chr12 4943927 4944088 -138842367 - MIR SINE MIR -6 256 74 2368 58 0 45 chr12 4944144 4944455 -138842000 + AluY SINE Alu 1 297 -14 245 222 321 12 chr12 4944462 4944543 -138841912 - MER5B DNA MER1_type -72 106 1 341 234 99 63 chr12 4944650 4944761 -138841694 + L2 LINE L2 3199 3313 0 267 368 8 0 chr12 4944777 4944894 -138841561 - L2 LINE L2 -5 3308 3191 851 136 35 0 chr12 4944896 4945065 -138841390 - MER33 DNA MER1_type 0 324 150 194 114 0 23 chr12 4945105 4945149 -138841306 + (TAAAA)n Simple_repeat Simple_repeat 5 47 0 424 213 200 27 chr12 4945152 4945302 -138841153 - MER33 DNA MER1_type -148 176 1 231 224 104 0 chr12 4945342 4945409 -138841046 - L2 LINE L2 -235 3078 3005 33 66 0 0 chr12 4946015 4946076 -138840379 + AT_rich Low_complexity Low_complexity 1 61 0 1774 155 41 10 chr12 4946474 4946648 -138839807 - AluJb SINE Alu -8 304 116 408 40 0 0 chr12 4946648 4946698 -138839757 + (TTA)n Simple_repeat Simple_repeat 2 51 0 1774 155 41 10 chr12 4946698 4946814 -138839641 - AluJb SINE Alu -196 116 5 903 109 0 0 chr12 4946978 4947097 -138839358 + FLAM_C SINE Alu 1 119 -24 442 258 39 62 chr12 4947134 4947312 -138839143 + MIR SINE MIR 49 222 -40 2459 88 0 0 chr12 4948053 4948360 -138838095 + AluSp SINE Alu 1 307 -6 237 328 52 72 chr12 4950552 4950802 -138835653 - L2 LINE L2 -684 2630 2386 2255 98 0 10 chr12 4950814 4951111 -138835344 + AluSx SINE Alu 5 298 -14 482 257 37 93 chr12 4951160 4951374 -138835081 + MIR3 SINE MIR 1 202 -6 353 344 31 0 chr12 4951997 4952125 -138834330 - L2 LINE L2 -4 3268 3137 32 57 0 0 chr12 4952402 4952455 -138834000 + AT_rich Low_complexity Low_complexity 1 53 0 572 149 0 9 chr12 4952466 4952580 -138833875 - L1MA4 LINE L1 -149 6151 6039 843 326 70 56 chr12 4952653 4953312 -138833143 - L3 LINE CR1 -4 1573 906 583 157 37 9 chr12 4954863 4954971 -138831484 + AluSq/x SINE Alu 1 111 -201 2387 56 0 0 chr12 4955002 4955289 -138831166 + AluSc SINE Alu 23 309 0 184 316 167 47 chr12 4955414 4955689 -138830766 - L2 LINE L2 -161 3111 2804 216 338 198 9 chr12 4955729 4956052 -138830403 - L2 LINE L2 -581 2733 2350 28 0 0 0 chr12 4958427 4958455 -138828000 + AT_rich Low_complexity Low_complexity 1 28 0 863 293 30 19 chr12 4958675 4958945 -138827510 + Charlie8 DNA MER1_type 4 276 -2141 182 400 43 14 chr12 4959490 4959630 -138826825 - L2 LINE L2 -338 2976 2833 719 232 98 31 chr12 4959912 4960166 -138826289 + L1ME4a LINE L1 5603 5873 -248 544 264 121 25 chr12 4960524 4960763 -138825692 - MIR SINE MIR 0 262 1 330 256 259 41 chr12 4961038 4961405 -138825050 - L2 LINE L2 -339 2975 2529 1184 180 0 9 chr12 4961697 4961908 -138824547 + MER3 DNA MER1_type 1 209 0 1774 173 90 22 chr12 4962254 4962654 -138823801 + MLT1D LTR MaLR 1 427 -78 466 315 43 16 chr12 4963217 4963401 -138823054 + MIR SINE MIR 23 211 -51 696 239 22 22 chr12 4963905 4964089 -138822366 + MIR SINE MIR 77 260 -2 24 53 0 0 chr12 4964546 4964584 -138821871 + AT_rich Low_complexity Low_complexity 1 38 0 272 177 146 52 chr12 4964642 4964738 -138821717 - L1ME4a LINE L1 -18 6103 5999 551 217 108 43 chr12 4964796 4965073 -138821382 - L1MC5 LINE L1 -46 7915 7621 389 266 28 37 chr12 4965080 4965227 -138821228 - L1MC5 LINE L1 -445 7516 7370 2337 97 3 0 chr12 4965227 4965525 -138820930 - AluSx SINE Alu -13 299 1 389 266 28 37 chr12 4965525 4965595 -138820860 - L1MC5 LINE L1 -591 7370 7301 2014 161 0 0 chr12 4965799 4966110 -138820345 + AluSx SINE Alu 1 311 -1 900 124 7 15 chr12 4966773 4966910 -138819545 - L1M3 LINE L1 -424 5747 5612 939 165 60 22 chr12 4966911 4967093 -138819362 - MER46A DNA MER2_type -1 235 47 392 274 78 0 chr12 4967158 4967260 -138819195 + L2 LINE L2 3202 3311 -2 24 53 0 0 chr12 4967339 4967377 -138819078 + AT_rich Low_complexity Low_complexity 1 38 0 202 295 65 36 chr12 4967442 4967581 -138818874 + L2 LINE L2 2701 2843 -471 223 421 19 0 chr12 4967642 4967749 -138818706 + L2 LINE L2 2942 3050 -222 21 0 0 0 chr12 4968534 4968555 -138817900 + AT_rich Low_complexity Low_complexity 1 21 0 646 299 56 21 chr12 4968793 4969027 -138817428 + MIR SINE MIR 7 248 -14 1819 160 14 0 chr12 4969375 4969668 -138816787 + AluJo SINE Alu 1 297 -15 22 35 0 0 chr12 4970826 4970855 -138815600 + AT_rich Low_complexity Low_complexity 1 29 0 244 220 68 17 chr12 4970878 4970937 -138815518 - L2 LINE L2 -9 3263 3202 5049 144 45 9 chr12 4971144 4972098 -138814357 - L1MB7 LINE L1 0 6184 5196 2160 116 7 3 chr12 4973378 4973679 -138812776 + AluSq SINE Alu 1 302 -11 41 66 0 0 chr12 4974920 4974996 -138811459 + AT_rich Low_complexity Low_complexity 1 76 0 1390 133 69 9 chr12 4975430 4975648 -138810807 - MER46A DNA MER2_type -5 231 1 1086 202 32 9 chr12 4975757 4975975 -138810480 - Charlie1a DNA MER1_type -907 548 326 1373 227 42 30 chr12 4976093 4976423 -138810032 - Charlie1a DNA MER1_type -1121 334 1 1346 297 95 25 chr12 4976444 4977056 -138809399 + L2 LINE L2 2306 2960 -354 280 277 89 30 chr12 4977311 4977412 -138809043 + MIR SINE MIR 6 112 -150 858 257 50 20 chr12 4978658 4978958 -138807497 - L1ME3 LINE L1 -264 5898 5590 342 338 81 68 chr12 4979253 4979891 -138806564 - L2 LINE L2 -8 3264 2622 26 50 0 0 chr12 4980914 4980954 -138805501 + AT_rich Low_complexity Low_complexity 1 40 0 473 296 45 75 chr12 4981242 4981345 -138805110 - MIR3 SINE MIR -10 198 102 791 232 27 16 chr12 4981345 4981530 -138804925 + MER5A DNA MER1_type 1 187 -2 473 296 45 75 chr12 4981530 4981625 -138804830 - MIR3 SINE MIR -106 102 6 1881 158 3 7 chr12 4982038 4982336 -138804119 + AluJb SINE Alu 3 299 -13 908 139 61 11 chr12 4982821 4983001 -138803454 + MER53 DNA DNA 1 189 0 301 213 106 0 chr12 4983104 4983198 -138803257 - HsTC2 DNA Tc2 0 1900 1797 342 342 84 8 chr12 4983224 4983461 -138802994 - L2 LINE L2 -1366 1948 1694 768 322 162 37 chr12 4983471 4984204 -138802251 - L2 LINE L2 -1731 1583 759 1698 144 101 15 chr12 4984208 4984532 -138801923 - MER83 LTR ERV1 0 448 97 1146 74 217 0 chr12 4984532 4984721 -138801734 + MER30 DNA MER1_type 1 230 0 851 39 0 0 chr12 4984723 4984825 -138801630 - MER83 LTR ERV1 -346 102 1 314 315 39 62 chr12 4984837 4985097 -138801358 - L2 LINE L2 -2571 743 490 634 263 202 3 chr12 4987133 4987360 -138799095 - MIR SINE MIR -11 251 1 390 21 0 0 chr12 4987795 4987842 -138798613 + (TG)n Simple_repeat Simple_repeat 2 48 0 2345 98 0 0 chr12 4989884 4990179 -138796276 - AluSx SINE Alu -17 295 1 931 201 31 35 chr12 4990347 4990576 -138795879 - L1ME3A LINE L1 -5 6165 5938 22 0 0 0 chr12 4991045 4991067 -138795388 + AT_rich Low_complexity Low_complexity 1 22 0 244 264 107 14 chr12 4991805 4991945 -138794510 - L2 LINE L2 -71 3242 3090 237 269 0 125 chr12 4992208 4992312 -138794143 + L2 LINE L2 3182 3272 0 316 238 75 0 chr12 4992517 4992597 -138793858 - MER112 DNA MER1_type -174 86 1 361 102 65 32 chr12 4992642 4992705 -138793750 + AluSp/q SINE Alu 234 295 -8 5579 41 2 5 chr12 4992764 4993397 -138793058 - L1PA5 LINE L1 0 6154 5524 501 198 52 13 chr12 4993619 4993751 -138792704 - L1ME1 LINE L1 0 7129 6836 2460 195 67 27 chr12 4993761 4994325 -138792130 - L1ME1 LINE L1 -205 6756 6170 1291 177 59 20 chr12 4994331 4994504 -138791951 - L1ME1 LINE L1 -839 6102 5910 1755 174 48 3 chr12 4994504 4994820 -138791635 - L1MC1 LINE L1 -3 6330 6001 1291 177 59 20 chr12 4994820 4994951 -138791504 - L1ME1 LINE L1 -1031 5910 5786 180 0 0 0 chr12 4995021 4995041 -138791414 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 278 242 0 0 chr12 4995041 4995103 -138791352 - L1ME1 LINE L1 -2458 4483 4422 607 218 82 20 chr12 4995130 4995356 -138791099 - L1ME1 LINE L1 -4887 1536 1326 2120 100 0 31 chr12 4995371 4995660 -138790795 - AluSg SINE Alu -30 280 1 323 217 152 0 chr12 4995662 4995754 -138790701 - L1ME1 LINE L1 -5072 1351 1246 1135 93 20 0 chr12 4995960 4996110 -138790345 - L1PB1 LINE L1 0 6151 5999 575 260 60 89 chr12 4996131 4996446 -138790009 - L1ME1 LINE L1 -5267 1156 851 1666 199 65 3 chr12 4996452 4996804 -138789651 - L1ME1 LINE L1 -5954 469 96 1505 144 129 8 chr12 4996804 4997068 -138789387 - MER1B DNA MER1_type 0 339 44 30 0 0 0 chr12 4998015 4998045 -138788410 + AT_rich Low_complexity Low_complexity 1 30 0 865 136 0 0 chr12 4998045 4998163 -138788292 - FLAM_C SINE Alu -25 118 1 264 30 0 0 chr12 4998999 4999032 -138787423 + (TC)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chr12 4999031 4999054 -138787401 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 23 86 0 0 chr12 4999117 4999175 -138787280 + AT_rich Low_complexity Low_complexity 1 58 0 3831 94 37 2 chr12 4999859 5000378 -138786077 - L1PA11 LINE L1 0 6174 5638 3282 169 77 29 chr12 5000773 5001475 -138784980 - L1MA9 LINE L1 -1 6311 5576 1112 31 0 8 chr12 5001644 5001773 -138784682 - L1PA3 LINE L1 0 6155 6028 216 67 0 0 chr12 5001831 5001861 -138784594 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 43634 32 26 2 chr12 5001861 5007843 -138778612 - L1PA2 LINE L1 -24 6131 1 2118 144 3 0 chr12 5007969 5008275 -138778180 - AluSx SINE Alu -4 308 2 1189 262 42 42 chr12 5008873 5009304 -138777151 - L1MC4a LINE L1 -1842 5966 5536 1453 146 106 17 chr12 5010518 5010819 -138775636 - LTR56 LTR ERV1 -117 328 1 2378 86 3 3 chr12 5010931 5011234 -138775221 + AluSp SINE Alu 1 303 -10 202 315 63 45 chr12 5011390 5011501 -138774954 - MIR SINE MIR -142 120 8 2429 146 3 11 chr12 5012201 5012570 -138773885 - MER47A DNA MER2_type 0 366 1 488 270 117 0 chr12 5012750 5012913 -138773542 - L1ME LINE L1 -404 5717 5536 4033 187 71 35 chr12 5013184 5013230 -138773225 - MER21B LTR ERV1 -32 831 788 441 0 0 0 chr12 5013230 5013279 -138773176 + (TG)n Simple_repeat Simple_repeat 2 50 0 4033 187 71 35 chr12 5013279 5013681 -138772774 - MER21B LTR ERV1 -75 788 402 3151 108 35 15 chr12 5013681 5013704 -138772751 + MER4C LTR ERV1 1 22 -443 2447 87 0 3 chr12 5013704 5014015 -138772440 + AluY SINE Alu 1 310 -1 3151 108 35 15 chr12 5014015 5014446 -138772009 + MER4C LTR ERV1 22 464 -1 4033 187 71 35 chr12 5014446 5014706 -138771749 - MER21B LTR ERV1 -461 402 87 1587 161 113 0 chr12 5014706 5014980 -138771475 + AluJb SINE Alu 2 306 -6 4033 187 71 35 chr12 5014980 5015071 -138771384 - MER21B LTR ERV1 -776 87 1 1010 258 16 12 chr12 5015382 5015638 -138770817 + MIR SINE MIR 6 262 0 462 319 126 40 chr12 5015919 5016687 -138769768 - L2 LINE L2 -5 3267 2365 227 336 26 0 chr12 5016735 5016848 -138769607 + L1ME LINE L1 5352 5467 -654 666 0 0 0 chr12 5017605 5017679 -138768776 + (CCA)n Simple_repeat Simple_repeat 2 75 0 271 229 0 0 chr12 5018064 5018125 -138768330 - L1ME LINE L1 -520 5644 5584 * 441 226 105 0 chr12 5018120 5018184 -138768271 - L1ME LINE L1 -3485 2661 2605 2797 192 79 29 chr12 5018184 5018778 -138767677 + MLT1E2 LTR MaLR 1 624 -2 441 226 105 0 chr12 5018778 5018894 -138767561 - L1ME LINE L1 -3541 2605 2462 881 159 0 14 chr12 5018936 5019081 -138767374 - FLAM_C SINE Alu 0 143 1 2425 154 130 0 chr12 5019082 5019497 -138766958 - LTR44 LTR ERV1 -26 493 25 2325 85 7 0 chr12 5019499 5019792 -138766663 + AluSg SINE Alu 1 295 -15 733 192 6 144 chr12 5019834 5020086 -138766369 - L1ME LINE L1 -3680 2466 2264 1083 133 0 0 chr12 5020086 5020236 -138766219 + L1PA15 LINE L1 6013 6162 -3 733 192 6 144 chr12 5020236 5020296 -138766159 - L1ME LINE L1 -3882 2264 2197 511 184 0 0 chr12 5020304 5020391 -138766064 - MER58B DNA MER1_type 0 341 255 2717 166 127 31 chr12 5020425 5020514 -138765941 + L1MCa LINE L1 7 86 -6340 2444 75 0 3 chr12 5020514 5020822 -138765633 + AluSg SINE Alu 1 307 -3 2717 166 127 31 chr12 5020822 5021305 -138765150 + L1MCa LINE L1 86 634 -5792 4613 149 27 20 chr12 5021324 5022187 -138764268 + L1MCa LINE L1 834 1794 -4632 7728 219 31 77 chr12 5022198 5024086 -138762369 + L1MCa LINE L1 2684 4657 -1769 1454 35 0 99 chr12 5024086 5024288 -138762167 + L1PA3 LINE L1 5974 6155 0 7728 219 31 77 chr12 5024288 5024843 -138761612 + L1MCa LINE L1 4657 5010 -1416 2197 122 0 19 chr12 5024843 5025155 -138761300 - AluSx SINE Alu -6 306 1 7728 219 31 77 chr12 5025155 5025242 -138761213 + L1MCa LINE L1 5010 5099 -1327 198 103 0 0 chr12 5025587 5025616 -138760839 + (CAA)n Simple_repeat Simple_repeat 2 30 0 383 349 42 12 chr12 5026268 5026434 -138760021 + MIR SINE MIR 86 256 -6 574 198 127 24 chr12 5026548 5026674 -138759781 - FLAM_A SINE Alu -3 139 1 276 267 20 30 chr12 5027373 5027474 -138758981 - L1ME4a LINE L1 -55 6066 5967 608 222 2 19 chr12 5027540 5027680 -138758775 - L1MD3 LINE L1 -1109 6883 6717 381 75 0 0 chr12 5028727 5028780 -138757675 + (TG)n Simple_repeat Simple_repeat 2 54 0 1447 185 24 31 chr12 5028780 5029067 -138757388 - AluJb SINE Alu -27 285 1 407 274 213 5 chr12 5029108 5029305 -138757150 - MIR SINE MIR -5 257 20 242 296 0 20 chr12 5029381 5029479 -138756976 - L1ME4a LINE L1 -335 5786 5691 729 197 0 0 chr12 5029560 5029677 -138756778 + AluJo/FLAM SINE Alu 2 118 -194 2196 124 0 0 chr12 5029677 5029983 -138756472 - AluY SINE Alu -5 306 1 27 0 0 0 chr12 5029988 5030015 -138756440 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr12 5030071 5030101 -138756354 + (CA)n Simple_repeat Simple_repeat 2 31 0 321 317 46 42 chr12 5030245 5030416 -138756039 + MER5A DNA MER1_type 20 178 0 23 0 0 0 chr12 5030617 5030640 -138755815 + AT_rich Low_complexity Low_complexity 1 23 0 364 183 37 90 chr12 5030851 5030989 -138755466 - L1MC4 LINE L1 -1 8037 7685 357 150 1 68 chr12 5031115 5031262 -138755193 - L1MD2 LINE L1 -97 7711 6055 * 6903 174 139 98 chr12 5031260 5031977 -138754478 - L1MDa LINE L1 -4204 2336 1650 2162 112 6 34 chr12 5031977 5032299 -138754156 - AluSq SINE Alu 0 313 1 6903 174 139 98 chr12 5032299 5032774 -138753681 - L1MDa LINE L1 -4890 1650 1196 2004 143 0 7 chr12 5032774 5033068 -138753387 - AluJb SINE Alu -15 297 6 6903 174 139 98 chr12 5033068 5033089 -138753366 - L1MDa LINE L1 -5344 1196 1177 841 121 0 38 chr12 5033089 5033221 -138753234 - FLAM_C SINE Alu -16 127 1 6903 174 139 98 chr12 5033221 5034116 -138752339 - L1MDa LINE L1 -5363 1177 3 2299 95 0 6 chr12 5034118 5034433 -138752022 - AluSq SINE Alu 0 313 1 4750 29 41 39 chr12 5035484 5036070 -138750385 - LTR14C LTR ERVK 0 587 1 7785 75 2 3 chr12 5036707 5037676 -138748779 - LTR5 LTR ERVK 0 969 2 421 198 51 108 chr12 5037772 5037929 -138748526 + MIR SINE MIR 28 175 -87 347 292 7 52 chr12 5038290 5038510 -138747945 + GA-rich Low_complexity Low_complexity 1 209 0 2649 46 3 0 chr12 5039345 5039652 -138746803 + AluY SINE Alu 1 308 -3 340 239 11 45 chr12 5040338 5040426 -138746029 + MER91 DNA MER1_type 57 141 -55 237 350 0 0 chr12 5040486 5040546 -138745909 + MER91 DNA MER1_type 131 190 0 357 293 53 23 chr12 5040884 5041017 -138745438 - MER5A DNA MER1_type 0 189 53 * 403 253 53 11 chr12 5040929 5041024 -138745431 + MER5A DNA MER1_type 56 154 -35 2616 63 0 0 chr12 5041027 5041330 -138745125 - AluSg SINE Alu -7 303 1 276 336 16 33 chr12 5041587 5041709 -138744746 - MER5A DNA MER1_type -68 121 2 271 82 131 49 chr12 5042590 5042651 -138743804 - MIR SINE MIR -66 142 77 195 252 35 78 chr12 5042651 5042705 -138743750 + L2 LINE L2 1396 1505 -1809 4680 191 28 27 chr12 5042812 5044637 -138741818 - L1MB8 LINE L1 0 6178 4351 * 8180 167 51 15 chr12 5044623 5046332 -138740123 - L1MA6 LINE L1 0 6300 4478 2124 54 104 4 chr12 5046332 5046612 -138739843 - AluY SINE Alu -3 308 1 8180 167 51 15 chr12 5046612 5047327 -138739128 - L1MA6 LINE L1 -1822 4478 3790 822 238 29 0 chr12 5047361 5047533 -138738922 - MER45A DNA AcHobo 0 178 2 441 152 0 0 chr12 5047888 5047954 -138738501 - MER3 DNA MER1_type 0 209 144 441 152 0 0 chr12 5048057 5048123 -138738332 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 5048226 5048292 -138738163 - MER3 DNA MER1_type 0 209 144 415 182 0 0 chr12 5048395 5048461 -138737994 - MER3 DNA MER1_type 0 209 144 1017 218 35 0 chr12 5048564 5048766 -138737689 - MER3 DNA MER1_type 0 209 1 461 327 82 14 chr12 5049240 5049460 -138736995 + L2 LINE L2 2181 2415 -899 192 328 16 0 chr12 5049551 5049615 -138736840 - MIR SINE MIR -47 215 151 205 179 0 0 chr12 5049616 5049655 -138736800 + (CTA)n Simple_repeat Simple_repeat 1 39 0 357 259 191 38 chr12 5049797 5049928 -138736527 + MER5A DNA MER1_type 33 183 -6 307 363 8 0 chr12 5050072 5050196 -138736259 + L2 LINE L2 2624 2748 -566 2571 266 35 65 chr12 5050625 5051634 -138734821 + L1M4b LINE L1 12 1214 -5645 254 255 0 0 chr12 5051805 5051852 -138734603 + L1M4 LINE L1 915 961 -5894 * 260 229 0 0 chr12 5051826 5051874 -138734581 + L1M4 LINE L1 1177 1224 -5635 224 119 0 24 chr12 5052046 5052088 -138734367 + (GAAAA)n Simple_repeat Simple_repeat 2 42 0 1495 235 35 47 chr12 5052101 5052565 -138733890 + L1M4 LINE L1 1217 1674 -5185 3159 154 65 28 chr12 5052565 5053086 -138733369 + L1MCa LINE L1 20 565 -5861 1478 209 72 49 chr12 5053086 5053473 -138732982 + MSTD LTR MaLR 1 396 0 3159 154 65 28 chr12 5053473 5053521 -138732934 + L1MCa LINE L1 565 610 -5816 228 214 0 0 chr12 5053526 5053568 -138732887 + L1MCa LINE L1 570 611 -5815 1964 179 71 15 chr12 5053598 5054063 -138732392 + L1M4 LINE L1 4840 5330 -816 339 183 84 0 chr12 5054070 5054141 -138732314 + L1MA10 LINE L1 6180 6256 -78 206 316 0 0 chr12 5054173 5054230 -138732225 + MIR SINE MIR 201 257 -5 24 32 0 0 chr12 5054596 5054627 -138731828 + AT_rich Low_complexity Low_complexity 1 31 0 324 345 70 6 chr12 5054937 5055108 -138731347 - MIR SINE MIR -49 213 32 2286 102 0 10 chr12 5055129 5055443 -138731012 - AluY SINE Alu 0 311 1 381 320 85 25 chr12 5055676 5055876 -138730579 + MIR SINE MIR 14 225 -37 * 785 237 14 50 chr12 5055874 5055901 -138730554 - MIR SINE MIR -44 218 192 2158 134 0 0 chr12 5055901 5056200 -138730255 - AluSq SINE Alu -14 299 1 785 237 14 50 chr12 5056200 5056391 -138730064 - MIR SINE MIR -70 192 8 303 311 67 15 chr12 5056482 5056617 -138729838 + L3b LINE CR1 1319 1460 -123 220 333 31 10 chr12 5056932 5057028 -138729427 + MIR3 SINE MIR 62 159 -49 551 253 40 13 chr12 5057488 5057638 -138728817 + MIR SINE MIR 72 225 -37 209 266 62 0 chr12 5057895 5057959 -138728496 - L2 LINE L2 -1 3312 3245 676 153 53 46 chr12 5058492 5058623 -138727832 - AluJo SINE Alu -176 136 5 695 229 21 21 chr12 5059067 5059255 -138727200 + MIR SINE MIR 10 197 -65 246 114 0 0 chr12 5059712 5059747 -138726708 + MIR SINE MIR 204 238 -24 410 314 43 22 chr12 5060337 5060522 -138725933 + MIR3 SINE MIR 10 198 -10 192 397 0 0 chr12 5061470 5061548 -138724907 - L2 LINE L2 -197 3075 2998 919 148 0 15 chr12 5062253 5062388 -138724067 + FLAM_C SINE Alu 1 133 0 7565 201 36 12 chr12 5062550 5065655 -138720800 - L1MA2 LINE L1 0 7723 4540 5070 86 32 10 chr12 5065655 5066339 -138720116 - L1PA13 LINE L1 0 6163 5465 2599 147 2 0 chr12 5066339 5066761 -138719694 + L1P LINE L1 4726 5148 -998 * 20544 155 49 18 chr12 5066757 5071155 -138715300 - L1MA2 LINE L1 -3012 4553 19 240 295 121 27 chr12 5071284 5071564 -138714891 - MLT1I LTR MaLR -33 376 103 183 320 100 30 chr12 5071768 5071868 -138714587 + MIR SINE MIR 13 119 -143 221 288 34 0 chr12 5071872 5071931 -138714524 + L2 LINE L2 3238 3298 -15 2051 145 32 42 chr12 5072338 5072717 -138713738 + THE1C LTR MaLR 1 375 0 886 258 31 16 chr12 5072863 5073214 -138713241 - MLT1J LTR MaLR -31 480 77 183 286 0 0 chr12 5073865 5073907 -138712548 - L2 LINE L2 -16 3256 3215 314 219 16 0 chr12 5073920 5073984 -138712471 + MIR SINE MIR 43 107 -155 288 0 0 0 chr12 5074083 5074115 -138712340 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 360 0 0 0 chr12 5074114 5074154 -138712301 + (GA)n Simple_repeat Simple_repeat 1 40 0 2295 107 3 0 chr12 5074253 5074552 -138711903 - AluSx SINE Alu -12 300 1 228 291 18 18 chr12 5074968 5075023 -138711432 - MIR SINE MIR -188 74 20 2569 192 92 31 chr12 5075490 5076046 -138710409 - MLT1E LTR MaLR -3 590 1 646 233 70 57 chr12 5076770 5076998 -138709457 - MIR SINE MIR -30 232 2 487 157 209 52 chr12 5077085 5077200 -138709255 - FLAM_C SINE Alu 0 133 1 2990 123 14 2 chr12 5078252 5078681 -138707774 - MER57B LTR ERV1 0 434 1 2450 72 0 28 chr12 5080008 5080328 -138706127 - AluY SINE Alu 0 311 1 245 233 50 0 chr12 5080469 5080529 -138705926 - MIR SINE MIR -107 101 39 216 0 0 0 chr12 5080829 5080853 -138705602 + (T)n Simple_repeat Simple_repeat 1 24 0 316 143 54 0 chr12 5081036 5081133 -138705322 - AluSg SINE Alu 0 321 222 1603 115 34 26 chr12 5081312 5081546 -138704909 - AluSg SINE Alu -73 237 2 519 327 12 0 chr12 5081774 5081939 -138704516 + MIR SINE MIR 95 261 -1 427 282 107 43 chr12 5081985 5082265 -138704190 + L3 LINE CR1 799 1096 -481 616 310 99 58 chr12 5082484 5082878 -138703577 + L2 LINE L2 2862 3271 -1 420 305 17 77 chr12 5082944 5083177 -138703278 + L3 LINE CR1 1267 1485 -92 209 329 13 0 chr12 5083306 5083385 -138703070 + MIR SINE MIR 183 262 0 25 0 0 0 chr12 5083464 5083489 -138702966 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr12 5083841 5083869 -138702586 + AT_rich Low_complexity Low_complexity 1 28 0 412 276 85 92 chr12 5084725 5085159 -138701296 + L1ME4a LINE L1 5501 5931 -190 36 40 0 0 chr12 5085163 5085213 -138701242 + AT_rich Low_complexity Low_complexity 1 50 0 2275 112 0 10 chr12 5085493 5085807 -138700648 + AluSx SINE Alu 1 311 -1 454 333 86 25 chr12 5086013 5086211 -138700244 - MIR SINE MIR -5 257 48 339 321 28 0 chr12 5087292 5087398 -138699057 - MIR SINE MIR -128 134 26 2915 212 107 26 chr12 5089466 5090345 -138696110 + L1MC4a LINE L1 5329 5535 -643 1035 205 107 29 chr12 5090361 5090605 -138695850 + L1MC4 LINE L1 6754 7016 -1026 * 2376 173 60 24 chr12 5090603 5091101 -138695354 + L1MC4 LINE L1 7355 7870 -172 193 206 14 14 chr12 5091110 5091183 -138695272 + (TGGA)n Simple_repeat Simple_repeat 4 76 0 511 164 100 79 chr12 5091194 5091334 -138695121 + L1MC4 LINE L1 7900 8042 0 3442 219 28 28 chr12 5093295 5094117 -138692338 - MER99 DNA DNA -5 823 2 465 283 85 40 chr12 5097654 5097877 -138688578 - L1ME4a LINE L1 0 6121 5889 2270 77 0 7 chr12 5097877 5098174 -138688281 - AluY SINE Alu -16 295 1 1493 146 49 42 chr12 5098174 5098461 -138687994 - AluJo SINE Alu -7 305 17 511 308 73 13 chr12 5098856 5099064 -138687391 - MIR SINE MIR -1 261 43 925 137 0 0 chr12 5099154 5099285 -138687170 + FLAM_C SINE Alu 2 132 -1 1045 191 5 19 chr12 5099361 5099576 -138686879 - MER51C LTR ERV1 0 640 429 21 57 0 0 chr12 5099877 5099912 -138686543 + AT_rich Low_complexity Low_complexity 1 35 0 199 290 140 21 chr12 5100526 5100619 -138685836 + L2 LINE L2 3167 3270 -2 784 215 91 94 chr12 5100652 5101024 -138685431 - MLT1D LTR MaLR -134 371 1 254 296 231 22 chr12 5101084 5101405 -138685050 - L2 LINE L2 -16 3256 2869 188 317 58 8 chr12 5101446 5101566 -138684889 - L2 LINE L2 -467 2847 2722 505 267 27 20 chr12 5101974 5102120 -138684335 + MIR SINE MIR 1 147 -115 1377 266 58 28 chr12 5102120 5102549 -138683906 - MLT1J2 LTR MaLR 0 450 9 186 324 40 14 chr12 5102571 5102645 -138683810 + MIR SINE MIR 166 241 -21 224 30 30 0 chr12 5102648 5102681 -138683774 + (TG)n Simple_repeat Simple_repeat 1 34 0 303 309 55 9 chr12 5104276 5104386 -138682069 + MIR SINE MIR 47 161 -101 340 292 32 42 chr12 5104558 5104719 -138681736 + MIR SINE MIR 31 184 -60 2170 106 0 7 chr12 5105050 5105353 -138681102 - AluSx SINE Alu -11 301 1 1634 139 52 14 chr12 5105415 5105793 -138680662 + AluJb SINE Alu 1 389 0 477 230 86 33 chr12 5105853 5106005 -138680450 - L2 LINE L2 -2 3311 3152 4199 179 61 45 chr12 5106005 5106133 -138680322 + L1MB8 LINE L1 4915 5039 -1139 1899 146 0 16 chr12 5106133 5106468 -138679987 + AluSx SINE Alu 1 312 0 4199 179 61 45 chr12 5106468 5107585 -138678870 + L1MB8 LINE L1 5039 6178 0 918 237 158 73 chr12 5107585 5108086 -138678369 - L2 LINE L2 -151 3162 2598 719 261 65 15 chr12 5108086 5108285 -138678170 + MER63A DNA MER1_type 2 210 0 918 237 158 73 chr12 5108285 5108366 -138678089 - L2 LINE L2 -715 2598 2525 472 328 48 11 chr12 5108433 5108622 -138677833 - MER91A DNA MER1_type 0 196 1 211 313 146 28 chr12 5108622 5108759 -138677696 - MIR SINE MIR -84 178 25 233 264 26 0 chr12 5109059 5109141 -138677314 - MIR SINE MIR -81 127 42 260 302 69 35 chr12 5109311 5109427 -138677028 - L2 LINE L2 -1 3271 3152 315 213 0 0 chr12 5110083 5110158 -138676297 + (TG)n Simple_repeat Simple_repeat 2 76 0 293 239 15 0 chr12 5110289 5110356 -138676099 + MIR SINE MIR 48 115 -147 720 229 86 24 chr12 5110362 5110572 -138675883 - MLT1G LTR MaLR -4 586 364 275 152 0 0 chr12 5110604 5110650 -138675805 - MLT2A2 LTR ERVL -2 451 406 3051 104 17 7 chr12 5110686 5111100 -138675355 - MLT2A2 LTR ERVL -35 418 1 502 307 64 0 chr12 5111133 5111273 -138675182 + L2 LINE L2 3123 3271 -1 302 296 157 15 chr12 5112120 5112283 -138674172 - MIR3 SINE MIR -3 205 22 332 119 17 0 chr12 5114098 5114157 -138672298 + CT-rich Low_complexity Low_complexity 1 60 0 293 322 85 0 chr12 5114361 5114479 -138671976 - L2 LINE L2 -2 3270 3143 279 366 85 18 chr12 5114558 5114722 -138671733 + MIR3 SINE MIR 30 204 -4 290 224 104 0 chr12 5114998 5115065 -138671390 - tRNA-Glu-GAG tRNA tRNA 0 75 2 861 145 34 62 chr12 5115188 5115367 -138671088 - AluJo SINE Alu -24 288 115 395 274 42 2 chr12 5115368 5115539 -138670916 + MIR SINE MIR 45 260 -2 1024 287 87 21 chr12 5115947 5116327 -138670128 - MLT1I LTR MaLR -2 407 3 2055 118 10 0 chr12 5117959 5118255 -138668200 - AluSc SINE Alu -10 299 1 1114 289 27 27 chr12 5118297 5118702 -138667753 - MLT1I LTR MaLR -4 405 1 288 0 0 0 chr12 5119280 5119312 -138667143 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr12 5119908 5119932 -138666523 + (CA)n Simple_repeat Simple_repeat 1 24 0 1436 301 101 48 chr12 5120215 5121131 -138665324 + L2 LINE L2 2014 3014 -299 2008 125 0 0 chr12 5121131 5121418 -138665037 - AluSx SINE Alu -25 287 1 1436 301 101 48 chr12 5121418 5121735 -138664720 + L2 LINE L2 3014 3313 0 493 235 61 0 chr12 5122891 5123023 -138663432 + LTR43 LTR ERV1 169 308 -294 274 211 35 0 chr12 5123900 5123957 -138662498 + MIR SINE MIR 204 262 0 24 0 0 0 chr12 5128598 5128622 -138657833 + AT_rich Low_complexity Low_complexity 1 24 0 278 242 68 83 chr12 5128690 5128822 -138657633 + MIR SINE MIR 42 171 -91 258 373 12 6 chr12 5130499 5130660 -138655795 + CT-rich Low_complexity Low_complexity 1 162 0 248 254 120 74 chr12 5131008 5131225 -138655230 + L3b LINE CR1 1115 1341 -242 262 239 0 57 chr12 5131424 5131512 -138654943 + L1MB8 LINE L1 6035 6117 -61 480 18 0 0 chr12 5131726 5131783 -138654672 + (TG)n Simple_repeat Simple_repeat 1 57 0 23 54 0 0 chr12 5132111 5132148 -138654307 + AT_rich Low_complexity Low_complexity 1 37 0 299 383 25 41 chr12 5133696 5133892 -138652563 + MIR SINE MIR 20 212 -50 189 0 0 0 chr12 5134081 5134102 -138652353 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 209 146 21 0 chr12 5134426 5134474 -138651981 + (TTA)n Simple_repeat Simple_repeat 3 51 0 407 319 135 5 chr12 5134480 5134665 -138651790 - MIR SINE MIR -12 250 42 527 274 128 0 chr12 5135411 5135575 -138650880 + MIR SINE MIR 8 192 -70 371 303 29 67 chr12 5135585 5135749 -138650706 + MIR SINE MIR 6 161 -65 875 300 130 26 chr12 5135918 5136602 -138649853 - L2 LINE L2 -4 3309 2549 842 272 98 0 chr12 5137486 5137710 -138648745 - MIR SINE MIR -1 261 16 223 324 78 0 chr12 5138358 5138460 -138647995 + L2 LINE L2 2687 2796 -518 419 266 106 55 chr12 5138859 5139058 -138647397 + MLT1K LTR MaLR 363 571 -17 227 252 154 21 chr12 5139349 5139492 -138646963 - LTR33 LTR ERVL -163 358 197 435 218 0 0 chr12 5139709 5139796 -138646659 + LTR33 LTR ERVL 434 520 -1 202 250 125 0 chr12 5139937 5140001 -138646454 - MIR SINE MIR -103 105 34 612 291 23 0 chr12 5140421 5140593 -138645862 + MIR3 SINE MIR 30 205 -3 1757 195 58 6 chr12 5140905 5141249 -138645206 + MLT1A1 LTR MaLR 1 362 -3 209 275 38 25 chr12 5142809 5142889 -138643566 + GA-rich Low_complexity Low_complexity 4 84 0 * 300 329 153 14 chr12 5142843 5142977 -138643478 + HAL1 LINE L1 1106 1220 -1287 228 254 0 0 chr12 5142977 5143036 -138643419 + A-rich Low_complexity Low_complexity 1 59 0 300 329 153 14 chr12 5143036 5143059 -138643396 + HAL1 LINE L1 1220 1351 -1156 181 388 104 0 chr12 5143156 5143290 -138643165 + MIR3 SINE MIR 37 184 -24 780 226 32 36 chr12 5143894 5144115 -138642340 + MIR SINE MIR 29 248 -14 375 23 0 0 chr12 5146076 5146120 -138640335 + (CA)n Simple_repeat Simple_repeat 1 44 0 340 261 48 11 chr12 5146874 5147039 -138639416 - MIR SINE MIR -4 258 12 372 365 41 15 chr12 5148053 5148393 -138638062 - L3b LINE CR1 -92 1491 1143 1041 189 34 5 chr12 5148510 5148716 -138637739 - MER20 DNA MER1_type 0 219 8 41 58 0 0 chr12 5150036 5150105 -138636350 + AT_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chr12 5151887 5151915 -138634540 + AT_rich Low_complexity Low_complexity 1 28 0 362 100 17 0 chr12 5152187 5152247 -138634208 + (GGGGA)n Simple_repeat Simple_repeat 3 63 0 2158 110 3 0 chr12 5152362 5152684 -138633771 - AluSx SINE Alu 0 323 1 183 143 29 0 chr12 5152761 5152796 -138633659 - MIR3 SINE MIR -49 159 124 2583 150 31 0 chr12 5154087 5154500 -138631955 + MSTB LTR MaLR 1 426 0 2201 95 7 0 chr12 5154577 5154860 -138631595 + AluSg SINE Alu 2 286 -24 22 0 0 0 chr12 5154860 5154882 -138631573 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr12 5154922 5154947 -138631508 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2387 176 170 29 chr12 5154993 5155612 -138630843 + L1MB7 LINE L1 5454 6159 -25 321 356 65 40 chr12 5155732 5156007 -138630448 - L2 LINE L2 -2 3270 2989 232 320 115 0 chr12 5156758 5156880 -138629575 - MIR SINE MIR -8 254 119 1935 109 12 0 chr12 5157671 5157928 -138628527 - AluSq SINE Alu -53 260 1 364 223 161 18 chr12 5158533 5158645 -138627810 + MIR3 SINE MIR 15 142 -66 613 330 95 46 chr12 5159153 5160191 -138626264 + L2 LINE L2 2170 3271 -1 954 276 165 13 chr12 5160330 5160824 -138625631 + L2 LINE L2 2696 3264 -49 260 266 137 65 chr12 5161410 5161688 -138624767 - L2 LINE L2 -109 3163 2866 2204 109 10 19 chr12 5162558 5162871 -138623584 - AluSg SINE Alu 0 310 1 421 290 73 38 chr12 5162933 5163361 -138623094 + L2 LINE L2 2627 3079 -193 1255 211 102 5 chr12 5163798 5164177 -138622278 + MER63 DNA MER1_type 8 1060 0 2258 76 7 40 chr12 5164801 5165102 -138621353 + AluSg1 SINE Alu 1 291 -18 23 78 0 0 chr12 5165680 5165731 -138620724 + AT_rich Low_complexity Low_complexity 1 51 0 397 254 25 16 chr12 5166567 5166689 -138619766 - MIR3 SINE MIR -79 129 7 288 137 0 0 chr12 5167317 5167368 -138619087 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 943 254 65 7 chr12 5167764 5168040 -138618415 + MLT1C LTR MaLR 124 415 -52 849 47 0 0 chr12 5168044 5168150 -138618305 + (GAA)n Simple_repeat Simple_repeat 3 108 0 271 363 20 36 chr12 5168817 5169068 -138617387 + L3 LINE CR1 497 743 -834 219 234 0 0 chr12 5171172 5171219 -138615236 + L3 LINE CR1 1530 1576 -1 1718 182 24 0 chr12 5172254 5172551 -138613904 - AluJb SINE Alu -4 308 5 1206 258 81 15 chr12 5174326 5174722 -138611733 + LTR16A LTR ERVL 23 444 -6 1995 38 8 0 chr12 5174731 5174970 -138611485 - L1PA4 LINE L1 0 6155 5915 244 53 53 26 chr12 5175059 5175097 -138611358 - L1PA4 LINE L1 -280 5875 5837 1753 196 0 3 chr12 5176122 5176423 -138610032 - AluJb SINE Alu -11 301 2 25 0 0 0 chr12 5179092 5179117 -138607338 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr12 5179203 5179232 -138607223 + AT_rich Low_complexity Low_complexity 1 29 0 198 217 104 87 chr12 5179781 5179853 -138606602 - MIR SINE MIR -59 203 127 2100 131 7 0 chr12 5179853 5180150 -138606305 + AluSx SINE Alu 1 299 -13 198 217 104 87 chr12 5180150 5180192 -138606263 - MIR SINE MIR -135 127 87 218 150 50 0 chr12 5180243 5180283 -138606172 - L2 LINE L2 -10 3262 3221 537 233 54 4 chr12 5180888 5181055 -138605400 + MER104 DNA Tc2 1 177 -3 192 97 0 0 chr12 5181994 5182025 -138604430 + (TCTCTG)n Simple_repeat Simple_repeat 2 32 0 251 53 0 26 chr12 5186364 5186402 -138600053 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 23 33 0 0 chr12 5186633 5186663 -138599792 + AT_rich Low_complexity Low_complexity 1 30 0 39 38 0 0 chr12 5192219 5192272 -138594183 + AT_rich Low_complexity Low_complexity 1 53 0 276 170 0 0 chr12 5192699 5192752 -138593703 + CT-rich Low_complexity Low_complexity 2 54 0 621 219 0 24 chr12 5192759 5192882 -138593573 - FRAM SINE Alu -61 115 1 766 322 173 8 chr12 5192932 5193697 -138592758 - L2 LINE L2 0 3313 2407 267 287 30 48 chr12 5194200 5194367 -138592088 + LTR16C LTR ERVL 328 491 0 2136 279 128 26 chr12 5194368 5194491 -138591964 - L2 LINE L2 -942 2372 2263 889 173 152 11 chr12 5194491 5194682 -138591773 - MER20 DNA MER1_type 0 219 2 2136 279 128 26 chr12 5194682 5195482 -138590973 - L2 LINE L2 -1051 2263 1327 2166 138 3 0 chr12 5195482 5195793 -138590662 + AluSx SINE Alu 1 312 0 2136 279 128 26 chr12 5195793 5195918 -138590537 - L2 LINE L2 -1987 1327 1216 2292 90 0 7 chr12 5196388 5196727 -138589728 - AluY SINE Alu 0 311 1 810 301 52 19 chr12 5197148 5197457 -138588998 + L1ME1 LINE L1 139 457 -5939 4282 222 107 28 chr12 5197479 5197657 -138588798 + L1ME1 LINE L1 3893 4055 -2160 243 0 0 0 chr12 5197657 5197684 -138588771 + (CA)n Simple_repeat Simple_repeat 2 28 0 4282 222 107 28 chr12 5197684 5198934 -138587521 + L1ME1 LINE L1 4055 5434 -781 993 193 140 8 chr12 5198915 5199158 -138587297 + L1ME1 LINE L1 5955 6229 -6 * 375 342 59 78 chr12 5199386 5199860 -138586595 - L2 LINE L2 -4 3268 2804 310 325 68 12 chr12 5200179 5200342 -138586113 + MLT1L LTR MaLR 410 581 -34 585 310 54 71 chr12 5200431 5200912 -138585543 - MLT1K LTR MaLR -7 581 109 186 231 0 0 chr12 5201010 5201049 -138585406 - L2 LINE L2 -844 2470 2432 360 311 97 48 chr12 5201131 5201677 -138584778 - L2 LINE L2 -1409 1905 1333 7300 124 48 10 chr12 5201824 5202740 -138583715 + Tigger3b DNA MER2_type 3 974 -2054 1936 148 3 13 chr12 5202740 5203043 -138583412 - AluJb SINE Alu -7 305 6 7300 124 48 10 chr12 5203043 5203292 -138583163 + Tigger3b DNA MER2_type 974 1212 -19 739 229 58 39 chr12 5204244 5204421 -138582034 - MER3 DNA MER1_type 0 209 26 2472 68 0 3 chr12 5204421 5204717 -138581738 - AluY SINE Alu -16 295 1 739 229 58 39 chr12 5204717 5204744 -138581711 - MER3 DNA MER1_type -183 26 1 201 156 0 0 chr12 5205276 5205308 -138581147 + (CATA)n Simple_repeat Simple_repeat 3 34 0 2390 89 0 0 chr12 5205973 5206266 -138580189 - AluSc SINE Alu -16 293 1 26 30 0 0 chr12 5208709 5208742 -138577713 + AT_rich Low_complexity Low_complexity 1 33 0 1914 123 82 21 chr12 5208972 5209312 -138577143 + MER46B DNA MER2_type 1 236 0 802 289 76 23 chr12 5209369 5209764 -138576691 - L1ME3A LINE L1 -328 5842 5427 * 4288 204 56 38 chr12 5209756 5210659 -138575796 - L1MB3 LINE L1 0 6183 5258 512 65 0 130 chr12 5210659 5210751 -138575704 - MADE1 DNA Mariner 0 80 1 4288 204 56 38 chr12 5210751 5211288 -138575167 - L1MB3 LINE L1 -925 5258 4732 1508 269 121 37 chr12 5211423 5211992 -138574463 - L1MB3 LINE L1 -1650 4496 3977 1685 182 30 43 chr12 5211992 5212360 -138574095 - MLT1A1 LTR MaLR -2 363 1 1508 269 121 37 chr12 5212360 5213042 -138573413 - L1MB3 LINE L1 -2169 3977 3139 511 238 142 27 chr12 5213041 5213425 -138573030 - L1MEc LINE L1 -4494 1635 1242 * 687 294 107 44 chr12 5213426 5213492 -138572963 - L1MEc LINE L1 -4933 1186 1126 2636 39 7 3 chr12 5213492 5213799 -138572656 - AluY SINE Alu -3 308 1 687 294 107 44 chr12 5213799 5214351 -138572104 - L1MEc LINE L1 -4993 1126 529 255 219 0 16 chr12 5215047 5215111 -138571344 + GA-rich Low_complexity Low_complexity 2 64 0 218 286 14 0 chr12 5215326 5215396 -138571059 + L3b LINE CR1 1333 1403 -180 243 0 0 0 chr12 5215466 5215493 -138570962 + (TC)n Simple_repeat Simple_repeat 2 28 0 180 0 0 0 chr12 5215492 5215512 -138570943 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 210 71 0 0 chr12 5215531 5215559 -138570896 + (CACG)n Simple_repeat Simple_repeat 1 28 0 1649 163 3 37 chr12 5216132 5216427 -138570028 + AluJo SINE Alu 9 293 -19 925 264 35 35 chr12 5216649 5216967 -138569488 + L1MA9 LINE L1 5957 6274 -38 309 222 152 10 chr12 5217413 5217512 -138568943 - MIR SINE MIR -118 144 32 276 374 14 14 chr12 5217626 5217765 -138568690 + MIR SINE MIR 7 145 -117 194 327 0 0 chr12 5217773 5217828 -138568627 + L2 LINE L2 3247 3301 -12 453 230 57 109 chr12 5217948 5218076 -138568379 + L1MC5 LINE L1 7603 7736 -225 2563 47 0 28 chr12 5218076 5218396 -138568059 + AluY SINE Alu 1 311 0 453 230 57 109 chr12 5218396 5218598 -138567857 + L1MC5 LINE L1 7736 7916 -45 221 248 34 86 chr12 5219668 5219785 -138566670 - MIR SINE MIR -70 192 82 1016 145 14 104 chr12 5220114 5220335 -138566120 + THE1B LTR MaLR 164 364 0 12103 95 2 2 chr12 5220335 5221916 -138564539 + THE1B-int LTR MaLR 1 1580 0 2104 132 30 30 chr12 5221916 5222279 -138564176 + THE1B LTR MaLR 1 363 -1 270 255 78 35 chr12 5222285 5222426 -138564029 + MIR SINE MIR 115 261 -1 2611 206 17 11 chr12 5222902 5223441 -138563014 - MER74A LTR ERVL -16 542 1 243 261 118 59 chr12 5223718 5223837 -138562618 - L2 LINE L2 -1 3271 3146 271 330 32 37 chr12 5224546 5224734 -138561721 - L3 LINE CR1 -335 1242 1056 188 323 99 20 chr12 5224883 5225084 -138561371 + L3b LINE CR1 1342 1558 -25 1191 284 130 40 chr12 5226316 5226502 -138559953 - L1M4 LINE L1 -1783 4363 4195 829 92 8 8 chr12 5226502 5226632 -138559823 + (TTTC)n Simple_repeat Simple_repeat 2 131 0 1191 284 130 40 chr12 5226632 5226946 -138559509 - L1M4 LINE L1 -1951 4195 3911 2096 39 75 4 chr12 5226946 5227201 -138559254 + AluY SINE Alu 24 296 -15 1191 284 130 40 chr12 5227201 5227930 -138558525 - L1M4 LINE L1 -2235 3911 3022 416 304 81 14 chr12 5228302 5228647 -138557808 - L1M4 LINE L1 -3526 2620 2253 2638 174 131 13 chr12 5229859 5230400 -138556055 + MER6A DNA MER2_type 1 605 0 180 289 0 19 chr12 5230480 5230532 -138555923 + MIR3 SINE MIR 155 205 -3 23 0 0 0 chr12 5231130 5231153 -138555302 + AT_rich Low_complexity Low_complexity 1 23 0 577 259 15 0 chr12 5231682 5231813 -138554642 + MER94 DNA DNA 2 134 0 964 249 128 41 chr12 5232387 5232801 -138553654 + MLT1J2 LTR MaLR 1 450 0 3341 157 40 27 chr12 5233165 5233790 -138552665 + L1PA16 LINE L1 5521 6153 -13 479 153 92 0 chr12 5234526 5234624 -138551831 + MIR SINE MIR 60 166 -96 1530 138 0 127 chr12 5234786 5235126 -138551329 + AluJb SINE Alu 1 297 -15 200 219 0 0 chr12 5235459 5235500 -138550955 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 765 213 66 35 chr12 5235933 5236130 -138550325 - MER63A DNA MER1_type -7 203 1 882 284 0 0 chr12 5236713 5236938 -138549517 + MIR SINE MIR 28 252 -10 223 189 38 0 chr12 5236952 5237005 -138549450 + (CAT)n Simple_repeat Simple_repeat 3 57 0 1273 130 0 0 chr12 5238368 5238545 -138547910 - FRAM SINE Alu -4 172 1 529 268 37 6 chr12 5238602 5238766 -138547689 + MIR3 SINE MIR 33 201 -7 334 271 120 47 chr12 5238921 5239179 -138547276 - L2 LINE L2 -1 3312 3036 183 286 45 23 chr12 5239202 5239335 -138547120 - L2 LINE L2 -3120 194 59 435 38 0 0 chr12 5241425 5241478 -138544977 + (CA)n Simple_repeat Simple_repeat 1 53 0 788 211 33 11 chr12 5243052 5243232 -138543223 + MER5A DNA MER1_type 1 184 -5 2197 80 49 0 chr12 5243284 5243570 -138542885 + AluSp SINE Alu 1 300 -13 223 309 25 0 chr12 5244242 5244323 -138542132 - MIR3 SINE MIR -26 182 100 227 333 43 0 chr12 5245943 5246036 -138540419 - MIR SINE MIR -1 261 165 432 361 21 0 chr12 5246254 5246445 -138540010 - MIR3 SINE MIR -9 199 5 1020 219 113 124 chr12 5247557 5248502 -138537953 + L2 LINE L2 2405 3312 -1 247 246 14 29 chr12 5248793 5248862 -138537593 - L2 LINE L2 0 3272 3205 249 83 0 0 chr12 5251177 5251213 -138535242 + (A)n Simple_repeat Simple_repeat 1 36 0 1950 69 11 25 chr12 5251535 5251851 -138534604 - AluSc SINE Alu 0 321 10 1575 91 5 0 chr12 5251938 5252148 -138534307 + AluSp SINE Alu 79 289 -24 2720 258 109 40 chr12 5252175 5253462 -138532993 + HAL1 LINE L1 42 1416 -1091 1235 238 68 86 chr12 5253561 5253610 -138532845 + HAL1 LINE L1 1778 1826 -681 2305 75 0 25 chr12 5253610 5253928 -138532527 + AluY SINE Alu 1 310 -1 1235 238 68 86 chr12 5253928 5254438 -138532017 + HAL1 LINE L1 1826 2324 -183 1587 134 116 15 chr12 5254438 5254766 -138531689 + MER46B DNA MER2_type 1 236 0 1235 238 68 86 chr12 5254766 5254912 -138531543 + HAL1 LINE L1 2324 2471 -36 503 193 180 19 chr12 5255006 5255167 -138531288 + MER53 DNA DNA 2 188 -1 1449 258 110 43 chr12 5255189 5255934 -138530521 + HAL1 LINE L1 1383 2177 -330 978 250 41 116 chr12 5255988 5256566 -138529889 + L2 LINE L2 2754 3293 -20 561 196 23 86 chr12 5256576 5256737 -138529718 + HAL1 LINE L1 2301 2446 -61 2497 144 34 2 chr12 5256737 5257148 -138529307 + MSTA LTR MaLR 1 424 -4 561 196 23 86 chr12 5257148 5257206 -138529249 + HAL1 LINE L1 2446 2506 -1 2499 50 0 0 chr12 5257214 5257516 -138528939 + AluY SINE Alu 1 302 -9 376 323 85 11 chr12 5257621 5257881 -138528574 + L2 LINE L2 2450 2728 -586 2104 139 144 11 chr12 5257884 5258258 -138528197 + MSTA LTR MaLR 1 424 -4 340 353 101 58 chr12 5258329 5258631 -138527824 + L2 LINE L2 2850 3174 -98 450 0 0 0 chr12 5258631 5258681 -138527774 + (CA)n Simple_repeat Simple_repeat 2 51 0 340 353 101 58 chr12 5258681 5258775 -138527680 + L2 LINE L2 3174 3263 -9 966 225 136 121 chr12 5258942 5259529 -138526926 - Tigger8 DNA MER2_type -1 665 70 1215 91 6 0 chr12 5260220 5260396 -138526059 - L1P4 LINE L1 -684 5481 5305 441 0 0 0 chr12 5260449 5260498 -138525957 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 206 253 76 38 chr12 5260831 5260910 -138525545 + MIR SINE MIR 119 200 -62 2631 141 16 21 chr12 5261082 5261515 -138524940 - Tigger2a DNA MER2_type -2 432 2 1473 203 43 48 chr12 5261697 5262071 -138524384 + MLT1B LTR MaLR 1 372 -18 581 182 41 100 chr12 5262888 5263018 -138523437 + MER97c DNA MER1_type? 19 138 -952 4230 168 102 9 chr12 5263018 5263804 -138522651 - MER21B LTR ERV1 -3 860 2 581 182 41 100 chr12 5263804 5263843 -138522612 + MER97c DNA MER1_type? 138 178 -912 222 378 108 14 chr12 5264076 5264298 -138522157 + L2 LINE L2 2824 3066 -206 3346 133 25 55 chr12 5264386 5264445 -138522010 - LTR36 LTR ERV1 -26 585 526 2113 96 10 32 chr12 5264445 5264759 -138521696 + AluSq SINE Alu 1 307 -6 3346 133 25 55 chr12 5264759 5265260 -138521195 - LTR36 LTR ERV1 -85 526 42 2465 53 0 0 chr12 5265260 5265559 -138520896 + AluY SINE Alu 1 299 -12 3346 133 25 55 chr12 5265559 5265597 -138520858 - LTR36 LTR ERV1 -569 42 4 254 270 10 40 chr12 5266358 5266458 -138519997 + MLT1L LTR MaLR 17 113 -502 1770 148 3 23 chr12 5266459 5266762 -138519693 + AluJo SINE Alu 1 297 -15 270 116 0 0 chr12 5266771 5266814 -138519641 + (GAA)n Simple_repeat Simple_repeat 2 44 0 367 215 13 13 chr12 5266969 5267048 -138519407 + MLT1L LTR MaLR 322 400 -215 997 229 238 52 chr12 5267094 5267557 -138518898 + MLT1H LTR MaLR 1 549 0 268 261 22 11 chr12 5267557 5267639 -138518816 + MLT1L LTR MaLR 487 569 -46 385 329 86 7 chr12 5268732 5268884 -138517571 - MIR SINE MIR -78 184 21 321 331 33 76 chr12 5268970 5269154 -138517301 + MIR3 SINE MIR 9 184 -24 274 306 33 87 chr12 5270940 5271123 -138515332 + MER5B DNA MER1_type 5 177 -1 331 253 58 11 chr12 5271172 5271259 -138515196 + MER5A DNA MER1_type 56 146 -43 585 200 250 17 chr12 5271892 5272072 -138514383 + MIR SINE MIR 7 228 -34 323 248 177 9 chr12 5272194 5272307 -138514148 + L1ME4a LINE L1 5635 5766 -355 429 263 39 28 chr12 5272564 5272743 -138513712 + L1ME4a LINE L1 5941 6121 0 188 256 0 0 chr12 5272752 5272791 -138513664 - MIR SINE MIR -100 108 70 1006 169 13 9 chr12 5273402 5273721 -138512734 + GA-rich Low_complexity Low_complexity 1 320 0 259 277 79 20 chr12 5274095 5274196 -138512259 - MIR SINE MIR -84 124 18 217 0 61 0 chr12 5274440 5274473 -138511982 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 487 170 28 28 chr12 5275280 5275386 -138511069 + MER103 DNA DNA 14 119 -47 451 303 56 26 chr12 5275481 5275676 -138510779 + L3b LINE CR1 1265 1465 -118 449 270 82 41 chr12 5276485 5276681 -138509774 - MIR SINE MIR 0 262 59 2016 139 0 0 chr12 5276899 5277209 -138509246 - AluSx SINE Alu -2 310 1 2089 105 10 3 chr12 5278559 5278854 -138507601 + AluSq SINE Alu 1 297 -16 412 247 111 58 chr12 5278881 5279071 -138507384 - Charlie8 DNA MER1_type -2131 286 87 387 0 0 0 chr12 5279232 5279275 -138507180 + (CA)n Simple_repeat Simple_repeat 2 44 0 414 0 0 0 chr12 5280101 5280147 -138506308 + (TG)n Simple_repeat Simple_repeat 2 47 0 494 257 35 0 chr12 5280190 5280303 -138506152 + MIR SINE MIR 30 146 -62 391 297 102 0 chr12 5280762 5280890 -138505565 - MIR SINE MIR -48 214 74 300 304 0 0 chr12 5281607 5281768 -138504687 + (TG)n Simple_repeat Simple_repeat 2 162 0 319 211 42 0 chr12 5281768 5281839 -138504616 + L1MC4 LINE L1 1995 2068 -4358 261 253 40 61 chr12 5282040 5282139 -138504316 + MIR SINE MIR 71 167 -95 878 223 52 24 chr12 5282168 5282379 -138504076 - MIR SINE MIR -39 223 7 1676 137 45 16 chr12 5285322 5285615 -138500840 + L1P LINE L1 4351 4655 -1491 1202 106 38 64 chr12 5285615 5285840 -138500615 + L1PA11 LINE L1 5946 6174 0 1676 137 45 16 chr12 5285840 5285860 -138500595 + L1P LINE L1 4655 4673 -1473 294 293 57 19 chr12 5285925 5286031 -138500424 - L2 LINE L2 -9 3304 3195 278 137 20 0 chr12 5286203 5286254 -138500201 - MER53 DNA DNA 0 189 138 2793 209 34 61 chr12 5288363 5289120 -138497335 + L1MC4 LINE L1 4997 5773 -653 2443 62 3 0 chr12 5289120 5289428 -138497027 + AluY SINE Alu 1 309 -2 2793 209 34 61 chr12 5289428 5289628 -138496827 + L1MC4 LINE L1 5773 5320 -1106 249 98 0 0 chr12 5289628 5289669 -138496786 + (TG)n Simple_repeat Simple_repeat 2 42 0 2793 209 34 61 chr12 5289669 5290025 -138496430 + L1MC4 LINE L1 5319 5683 -743 304 315 34 68 chr12 5289709 5290061 -138496394 + L1MA10 LINE L1 5942 6281 -311 * 623 119 0 0 chr12 5290088 5290172 -138496283 - AluJ/FLAM SINE Alu -227 85 2 347 285 24 0 chr12 5290175 5290298 -138496157 + L1MA10 LINE L1 6486 6611 -3 699 265 152 19 chr12 5290590 5291096 -138495359 + L1ME3 LINE L1 5300 5829 -333 208 244 0 35 chr12 5291829 5291915 -138494540 + T-rich Low_complexity Low_complexity 2 84 0 264 344 32 0 chr12 5292022 5292179 -138494276 + L1ME LINE L1 5482 5643 -478 290 329 72 0 chr12 5292195 5292362 -138494093 + L1ME LINE L1 5692 5870 -300 2225 44 0 0 chr12 5292364 5292637 -138493818 - AluY SINE Alu -4 307 35 22 0 0 0 chr12 5292644 5292666 -138493789 + AT_rich Low_complexity Low_complexity 1 22 0 582 165 0 0 chr12 5292703 5292800 -138493655 + MSTA LTR MaLR 1 97 -331 1861 141 41 63 chr12 5293113 5293245 -138493210 + MSTA LTR MaLR 74 207 -221 2310 92 0 0 chr12 5293245 5293543 -138492912 + AluSc SINE Alu 9 302 -7 1861 141 41 63 chr12 5293543 5293773 -138492682 + MSTA LTR MaLR 207 428 0 467 257 68 78 chr12 5293990 5294580 -138491875 - L1MC5 LINE L1 -199 7843 7248 227 159 68 0 chr12 5294590 5294634 -138491821 - L1MC4 LINE L1 -795 7247 7201 * 331 288 68 41 chr12 5294611 5294830 -138491625 - L1MC5 LINE L1 -737 7224 7000 593 272 44 11 chr12 5295648 5295828 -138490627 + MIR SINE MIR 7 192 -70 2025 173 56 19 chr12 5295901 5296331 -138490124 + MER61C LTR ERV1 4 433 -1 219 236 0 18 chr12 5296625 5296680 -138489775 + MIR SINE MIR 88 141 -67 956 212 0 0 chr12 5298082 5298252 -138488203 - AluJb SINE Alu -7 305 136 1810 77 0 42 chr12 5298734 5298994 -138487461 + L1PB3 LINE L1 5752 6000 -154 490 308 50 6 chr12 5299074 5299233 -138487222 + MIR SINE MIR 22 187 -75 708 262 16 11 chr12 5299249 5299432 -138487023 - MIR SINE MIR -12 250 67 399 21 0 0 chr12 5299708 5299756 -138486699 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 235 0 29 chr12 5299773 5299841 -138486614 + (TCTCTG)n Simple_repeat Simple_repeat 2 67 0 197 0 71 0 chr12 5300484 5300512 -138485943 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 188 298 0 0 chr12 5301069 5301126 -138485329 - L3 LINE CR1 -1117 460 404 222 284 136 23 chr12 5302213 5302301 -138484154 + MIR SINE MIR 160 257 -5 977 206 94 26 chr12 5302926 5303276 -138483179 - LTR37A LTR ERV1 0 426 53 588 206 73 30 chr12 5305774 5305939 -138480516 - MER5B DNA MER1_type 0 178 7 314 264 46 11 chr12 5306167 5306254 -138480201 - MLT1I LTR MaLR 0 409 320 1964 151 47 114 chr12 5306355 5306844 -138479611 + MLT2C2 LTR ERVL 3 458 -6 25357 202 29 26 chr12 5306844 5307015 -138479440 + ERVL LTR ERVL 8 177 -5580 279 0 0 0 chr12 5307015 5307046 -138479409 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 25357 202 29 26 chr12 5307046 5308018 -138478437 + ERVL LTR ERVL 177 1145 -4612 2208 211 49 58 chr12 5308018 5308573 -138477882 - MLT2B3 LTR ERVL -4 550 1 25357 202 29 26 chr12 5308573 5313056 -138473399 + ERVL LTR ERVL 1145 5757 0 1787 180 30 3 chr12 5313062 5313395 -138473060 + MLT2C1 LTR ERVL 8 349 -48 227 140 70 0 chr12 5313414 5313471 -138472984 - L1MC4 LINE L1 -1341 6701 6641 557 119 144 85 chr12 5313485 5313603 -138472852 + Tigger1 DNA MER2_type 15 139 -2279 * 979 151 104 5 chr12 5313599 5313791 -138472664 + Tigger1 DNA MER2_type 2200 2410 -8 43560 32 25 1 chr12 5313792 5319794 -138466661 + L1PA2 LINE L1 4 6155 0 281 137 118 0 chr12 5319854 5319905 -138466550 + MLT2C1 LTR ERVL 464 520 0 329 295 51 26 chr12 5320235 5320391 -138466064 + MIR SINE MIR 47 206 -56 450 139 38 38 chr12 5320681 5320760 -138465695 - MER2 DNA MER2_type -266 79 1 637 300 79 45 chr12 5321555 5321958 -138464497 + MLT1K LTR MaLR 11 427 -161 390 42 0 0 chr12 5322499 5322547 -138463908 + (TG)n Simple_repeat Simple_repeat 2 49 0 205 182 0 23 chr12 5322789 5322833 -138463622 + GA-rich Low_complexity Low_complexity 1 43 0 302 314 122 0 chr12 5323037 5323209 -138463246 + MIR SINE MIR 46 238 -24 276 163 20 0 chr12 5323390 5323439 -138463016 - MER66A LTR ERV1 -402 76 27 315 317 69 7 chr12 5324718 5324863 -138461592 - MIR SINE MIR -17 245 92 3031 231 42 36 chr12 5324863 5325089 -138461366 - L1ME2 LINE L1 -3 6161 5938 2593 107 23 28 chr12 5325089 5325481 -138460974 - MLT1B LTR MaLR 0 390 1 3031 231 42 36 chr12 5325481 5326142 -138460313 - L1ME2 LINE L1 -226 5938 5282 1784 186 7 0 chr12 5326142 5326438 -138460017 + AluJb SINE Alu 1 298 -14 3031 231 42 36 chr12 5326438 5327226 -138459229 - L1ME2 LINE L1 -882 5282 4477 3231 146 23 4 chr12 5327231 5327744 -138458711 - L1PB4 LINE L1 -12 6144 5622 2221 125 46 10 chr12 5327748 5328330 -138458125 + L1PB4 LINE L1 5015 5609 -547 1805 241 77 42 chr12 5328332 5329070 -138457385 - L1ME2 LINE L1 -1655 4491 3728 209 344 0 0 chr12 5329076 5329137 -138457318 - MIR SINE MIR -153 109 49 3457 77 4 2 chr12 5329535 5329987 -138456468 - L1PA10 LINE L1 -51 6117 5665 4893 41 0 2 chr12 5330199 5330815 -138455640 + L1PA3 LINE L1 5598 6212 0 22 0 0 0 chr12 5332268 5332290 -138454165 + AT_rich Low_complexity Low_complexity 1 22 0 286 280 127 17 chr12 5332331 5332449 -138454006 + MIR3 SINE MIR 66 196 -12 271 258 86 80 chr12 5332645 5332796 -138453659 - L2 LINE L2 -4 3268 3117 487 299 58 39 chr12 5334700 5334907 -138451548 + MIR SINE MIR 40 250 -12 282 309 58 22 chr12 5335888 5336027 -138450428 - MIR3 SINE MIR -61 147 4 403 278 23 30 chr12 5337109 5337242 -138449213 - MIR SINE MIR -41 221 90 352 306 54 7 chr12 5337850 5337997 -138448458 + MIR3 SINE MIR 31 184 -24 297 283 40 10 chr12 5338595 5338694 -138447761 - MIR SINE MIR -26 236 135 195 259 161 25 chr12 5340417 5340498 -138445957 + MIR SINE MIR 44 135 -73 455 294 41 35 chr12 5340830 5341027 -138445428 - MIR SINE MIR -55 207 10 2417 235 56 14 chr12 5342518 5343160 -138443295 + L1MC4a LINE L1 7140 7808 0 1232 162 5 5 chr12 5343165 5343381 -138443074 + L1PA15 LINE L1 5938 6153 -12 274 128 0 39 chr12 5343381 5343428 -138443027 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 197 32 0 32 chr12 5343428 5343459 -138442996 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 327 188 43 0 chr12 5343757 5343826 -138442629 - L1MB1 LINE L1 -36 6153 6082 284 274 127 45 chr12 5344012 5344169 -138442286 - L3 LINE CR1 -34 1543 1374 462 296 169 21 chr12 5344361 5344604 -138441851 - L3 LINE CR1 -276 1301 1023 309 296 62 6 chr12 5344628 5344807 -138441648 + L1ME4a LINE L1 5706 5894 -227 * 1055 225 74 21 chr12 5344806 5345144 -138441311 + L1ME3A LINE L1 5812 6167 -3 2778 211 128 96 chr12 5345185 5345938 -138440517 + L1MC3 LINE L1 6384 7265 -520 342 191 29 0 chr12 5345938 5346006 -138440449 + MLT1F1 LTR MaLR 56 125 -442 2778 211 128 96 chr12 5346006 5346528 -138439927 + L1MC3 LINE L1 7265 7769 -16 240 269 0 0 chr12 5346586 5346638 -138439817 + (CA)n Simple_repeat Simple_repeat 2 53 0 578 192 0 10 chr12 5348035 5348139 -138438316 + FLAM_A SINE Alu 18 120 -22 441 0 0 0 chr12 5348824 5348873 -138437582 + (CA)n Simple_repeat Simple_repeat 1 49 0 294 303 23 61 chr12 5350093 5350225 -138436230 - L2 LINE L2 -4 3268 3142 399 244 144 37 chr12 5350308 5350579 -138435876 - LTR33 LTR ERVL 0 521 222 213 151 0 0 chr12 5351862 5351915 -138434540 + A-rich Low_complexity Low_complexity 1 53 0 355 271 241 15 chr12 5352376 5352579 -138433876 - MIR SINE MIR 0 262 14 351 60 0 0 chr12 5353680 5353730 -138432725 + (TG)n Simple_repeat Simple_repeat 2 51 0 375 276 106 76 chr12 5354087 5354362 -138432093 - HAL1 LINE L1 0 2507 2225 303 276 109 63 chr12 5354439 5354613 -138431842 - HAL1b LINE L1 -383 965 784 326 334 91 29 chr12 5355656 5356039 -138430416 + L1MEd LINE L1 347 753 -5366 192 258 81 0 chr12 5356169 5356231 -138430224 - MIR3 SINE MIR -32 176 110 793 243 21 21 chr12 5356716 5356905 -138429550 - MER5A DNA MER1_type 0 189 1 492 201 235 40 chr12 5356916 5357065 -138429390 - MER5A DNA MER1_type -3 186 9 186 246 58 72 chr12 5357766 5357835 -138428620 - L2 LINE L2 0 3272 3205 247 340 19 9 chr12 5358085 5358191 -138428264 + L3b LINE CR1 1292 1398 -185 184 346 0 0 chr12 5360792 5360844 -138425611 - MIR SINE MIR -141 67 16 181 260 52 31 chr12 5362422 5362518 -138423937 + L2 LINE L2 2925 3022 -250 215 333 151 0 chr12 5363005 5363098 -138423357 + MIR SINE MIR 47 153 -109 416 242 0 22 chr12 5363915 5364006 -138422449 + MIR3 SINE MIR 103 191 -17 237 341 53 59 chr12 5364455 5364633 -138421822 - MIR3 SINE MIR -63 199 9 366 285 132 51 chr12 5365023 5365214 -138421241 + MIR SINE MIR 5 204 -58 327 279 126 9 chr12 5365357 5365468 -138420987 + L2 LINE L2 3140 3263 -9 180 152 0 0 chr12 5365470 5365503 -138420952 + A-rich Low_complexity Low_complexity 5 37 0 215 247 206 0 chr12 5366229 5366302 -138420153 - MIR SINE MIR -129 133 46 1894 151 0 17 chr12 5366898 5367190 -138419265 + AluJb SINE Alu 5 291 -21 487 299 55 0 chr12 5367248 5367412 -138419043 - MIR SINE MIR -26 236 64 1874 189 3 0 chr12 5368422 5368718 -138417737 + AluJo SINE Alu 1 297 -15 23 78 0 0 chr12 5368743 5368794 -138417661 + AT_rich Low_complexity Low_complexity 1 51 0 2417 89 7 0 chr12 5368914 5369218 -138417237 + AluSx SINE Alu 1 306 -6 446 320 122 14 chr12 5369258 5369480 -138416975 + MIR SINE MIR 7 252 -10 366 248 219 0 chr12 5369469 5369574 -138416881 - L2 LINE L2 -2 3311 3184 * 345 302 111 48 chr12 5369943 5370132 -138416323 + MIR3 SINE MIR 3 203 -5 1037 295 43 19 chr12 5370366 5370742 -138415713 + MLT1I LTR MaLR 25 409 0 429 253 104 33 chr12 5371103 5371285 -138415170 - MIR SINE MIR -65 197 3 322 218 211 68 chr12 5372702 5372849 -138413606 + L2 LINE L2 3146 3313 0 217 313 16 0 chr12 5372851 5372915 -138413540 + L3b LINE CR1 1302 1366 -217 * 666 263 70 0 chr12 5372906 5373092 -138413363 + MIR SINE MIR 15 213 -49 789 150 18 0 chr12 5373097 5373210 -138413245 + FLAM_C SINE Alu 6 120 -23 180 0 0 0 chr12 5373210 5373230 -138413225 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 236 204 20 0 chr12 5373234 5373283 -138413172 + MIR SINE MIR 208 257 -5 640 282 31 31 chr12 5373694 5373889 -138412566 + MIR SINE MIR 8 202 -60 386 305 102 0 chr12 5374324 5374442 -138412013 + MER5A DNA MER1_type 60 189 0 234 204 0 0 chr12 5374453 5374497 -138411958 + MIR3 SINE MIR 164 207 -1 1498 217 17 0 chr12 5375368 5375663 -138410792 - AluJo SINE Alu -12 300 1 417 244 67 17 chr12 5376030 5376149 -138410306 + MIR3 SINE MIR 1 125 -83 215 289 0 0 chr12 5376199 5376244 -138410211 + L2 LINE L2 3210 3254 -18 181 318 71 48 chr12 5377090 5377216 -138409239 - L2 LINE L2 -12 3260 3132 617 239 189 25 chr12 5377264 5377507 -138408948 - L2 LINE L2 -6 3307 3025 444 285 223 0 chr12 5377735 5377928 -138408527 - MIR SINE MIR -26 236 1 1548 208 20 10 chr12 5378062 5378356 -138408099 - AluJo SINE Alu -15 297 1 302 286 82 59 chr12 5379164 5379419 -138407036 - MIR SINE MIR 0 262 2 230 193 35 0 chr12 5379789 5379846 -138406609 + MARNA DNA Mariner 394 452 -134 2333 104 0 0 chr12 5380278 5380575 -138405880 + AluSx SINE Alu 1 297 -15 333 0 0 0 chr12 5380575 5380612 -138405843 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 305 68 0 chr12 5381145 5381204 -138405251 + L2 LINE L2 3186 3248 -24 2270 71 0 20 chr12 5381451 5381787 -138404668 + AluY SINE Alu 17 311 0 183 336 80 50 chr12 5382218 5382456 -138403999 - L2 LINE L2 -4 3268 3024 845 83 0 18 chr12 5382477 5382586 -138403869 + AluSq/x SINE Alu 45 151 -161 299 331 132 0 chr12 5384747 5384868 -138401587 + L2 LINE L2 3136 3272 0 519 294 72 13 chr12 5385177 5385330 -138401125 + MIR3 SINE MIR 20 181 -27 593 121 30 0 chr12 5386097 5386196 -138400259 + MER58 DNA MER1_type 2318 2419 -1 208 327 28 37 chr12 5386529 5386636 -138399819 + L2 LINE L2 3153 3258 -14 2869 19 0 0 chr12 5386909 5387222 -138399233 - AluYb8 SINE Alu -5 313 1 182 170 0 21 chr12 5392374 5392421 -138394034 + C-rich Low_complexity Low_complexity 2 47 0 735 281 52 8 chr12 5393207 5393456 -138392999 - MIR SINE MIR 0 262 3 741 321 58 53 chr12 5394554 5395003 -138391452 + LTR16B LTR ERVL 1 451 -13 268 222 83 14 chr12 5395120 5395192 -138391263 - MER5A DNA MER1_type -99 90 14 326 186 12 0 chr12 5395284 5395370 -138391085 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 195 42 0 0 chr12 5397025 5397049 -138389406 + (TTCCC)n Simple_repeat Simple_repeat 3 26 0 802 243 15 5 chr12 5398264 5398443 -138388012 + MER5A DNA MER1_type 4 184 -5 354 249 141 68 chr12 5398519 5398696 -138387759 + MIR SINE MIR 15 204 -58 2941 148 24 16 chr12 5398983 5399482 -138386973 - MLT1D LTR MaLR -2 503 1 256 217 12 72 chr12 5399512 5399595 -138386860 - MIR3 SINE MIR -7 201 124 297 128 0 0 chr12 5400170 5400217 -138386238 + (T)n Simple_repeat Simple_repeat 1 47 0 234 81 0 0 chr12 5400537 5400574 -138385881 + (TG)n Simple_repeat Simple_repeat 2 38 0 471 328 41 26 chr12 5400828 5401023 -138385432 - MIR SINE MIR -2 260 63 797 219 31 85 chr12 5401825 5402049 -138384406 + MIR SINE MIR 49 260 -2 408 327 44 23 chr12 5402180 5402384 -138384071 + MIR SINE MIR 4 217 -45 1937 118 27 0 chr12 5402536 5402832 -138383623 - AluY SINE Alu -5 306 3 328 167 0 17 chr12 5402836 5402896 -138383559 - FAM SINE Alu -2 173 115 854 238 11 0 chr12 5402962 5403147 -138383308 - MLT2F LTR ERVL 0 663 477 180 200 0 0 chr12 5403175 5403220 -138383235 + (CTGGGG)n Simple_repeat Simple_repeat 3 47 0 2241 202 78 11 chr12 5403828 5404288 -138382167 - MLT2F LTR ERVL -172 491 1 409 240 31 31 chr12 5404676 5404805 -138381650 - MLT2F LTR ERVL -24 639 511 265 324 88 10 chr12 5405191 5405293 -138381162 + MIR SINE MIR 23 132 -76 2411 140 73 26 chr12 5405422 5405579 -138380876 + MER31A LTR ERV1 1 149 -336 1121 206 93 101 chr12 5405579 5406192 -138380263 - LTR36 LTR ERV1 0 611 4 2411 140 73 26 chr12 5406192 5406497 -138379958 + MER31A LTR ERV1 149 485 0 7497 37 5 0 chr12 5406593 5407536 -138378919 - L1PA5 LINE L1 0 6154 5210 261 57 0 0 chr12 5407603 5407638 -138378817 + (T)n Simple_repeat Simple_repeat 1 35 0 262 296 0 0 chr12 5407776 5407847 -138378608 + L2 LINE L2 3200 3270 -2 315 301 53 30 chr12 5407960 5408093 -138378362 - L1ME4a LINE L1 -11 6110 5975 406 313 113 0 chr12 5411388 5411538 -138374917 - MIR3 SINE MIR -2 206 40 671 228 58 78 chr12 5412726 5412932 -138373523 - MIR SINE MIR -41 221 20 476 191 75 0 chr12 5413852 5413946 -138372509 - MER5A DNA MER1_type -80 109 9 200 250 0 0 chr12 5414043 5414079 -138372376 - L3b LINE CR1 -257 1326 1291 679 282 12 82 chr12 5414090 5414335 -138372120 - MIR SINE MIR -3 259 32 195 383 47 0 chr12 5414768 5414875 -138371580 - L2 LINE L2 -24 3248 3137 257 308 15 90 chr12 5415164 5415297 -138371158 - L2 LINE L2 0 3313 3191 207 356 67 22 chr12 5415446 5415581 -138370874 - L2 LINE L2 -21 3251 3111 403 273 29 36 chr12 5415655 5415794 -138370661 + MER63A DNA MER1_type 69 206 -4 308 259 69 73 chr12 5415817 5416106 -138370349 - L2 LINE L2 -173 3099 2812 237 299 82 3 chr12 5416388 5416536 -138369919 + MIR SINE MIR 37 238 -24 380 343 70 6 chr12 5416654 5416826 -138369629 + L2 LINE L2 3087 3269 -3 245 183 17 0 chr12 5418276 5418336 -138368119 + (CA)n Simple_repeat Simple_repeat 2 62 0 1064 241 38 4 chr12 5420421 5420658 -138365797 - MIR SINE MIR 0 262 18 277 232 0 0 chr12 5420839 5420895 -138365560 + CT-rich Low_complexity Low_complexity 117 172 0 22 0 0 0 chr12 5421417 5421439 -138365016 + AT_rich Low_complexity Low_complexity 1 22 0 237 108 0 0 chr12 5421864 5421901 -138364554 + (TG)n Simple_repeat Simple_repeat 2 38 0 452 18 18 0 chr12 5422887 5422944 -138363511 + (GA)n Simple_repeat Simple_repeat 1 58 0 1917 188 30 10 chr12 5423193 5423592 -138362863 + L1MB7 LINE L1 5750 6156 -28 1247 203 109 14 chr12 5424429 5424705 -138361750 - AluJb SINE Alu 0 302 1 243 281 22 45 chr12 5425046 5425135 -138361320 + MIR SINE MIR 60 146 -62 324 120 0 0 chr12 5426628 5426678 -138359777 + (CATA)n Simple_repeat Simple_repeat 2 51 0 430 256 216 16 chr12 5427444 5427749 -138358706 + MLT1G1 LTR MaLR 230 595 0 269 277 23 35 chr12 5427980 5428097 -138358358 - MIR SINE MIR -103 105 16 5171 149 26 92 chr12 5428285 5429133 -138357322 - L1MA9 LINE L1 0 7272 6370 1664 88 0 0 chr12 5429133 5429349 -138357106 - AluSg/x SINE Alu -8 302 87 5171 149 26 92 chr12 5429349 5429648 -138356807 - L1MA9 LINE L1 -902 6370 6053 1735 172 13 0 chr12 5429648 5429956 -138356499 - AluJb SINE Alu 0 312 1 5171 149 26 92 chr12 5429956 5430081 -138356374 - L1MA9 LINE L1 -1219 6053 5921 2066 117 7 0 chr12 5430081 5430381 -138356074 - AluSq SINE Alu -11 302 1 5171 149 26 92 chr12 5430381 5430835 -138355620 - L1MA9 LINE L1 -1351 5921 5660 1883 229 37 18 chr12 5430827 5431339 -138355116 - L1MA9 LINE L1 -3423 3683 3162 * 980 266 99 20 chr12 5431367 5431769 -138354686 + MER57B LTR ERV1 1 434 0 1352 223 15 29 chr12 5431778 5431982 -138354473 - L1MA9 LINE L1 -5661 1369 1164 5019 28 2 5 chr12 5431982 5432564 -138353891 - L1PA3 LINE L1 -3 6152 5573 1352 223 15 29 chr12 5432564 5432698 -138353757 - L1MA9 LINE L1 -5866 1164 3 399 211 33 11 chr12 5432712 5432802 -138353653 + L2 LINE L2 3222 3313 0 330 337 66 31 chr12 5433466 5433662 -138352793 - MIR SINE MIR -36 226 24 195 299 58 23 chr12 5433798 5433885 -138352570 - MIR SINE MIR -70 192 103 248 265 44 0 chr12 5435116 5435184 -138351271 + L2 LINE L2 3242 3312 -1 476 283 36 18 chr12 5437013 5437179 -138349276 - MIR3 SINE MIR -10 198 30 1751 105 44 24 chr12 5437183 5437478 -138348977 + L1MA3 LINE L1 6005 6305 0 264 331 75 6 chr12 5438659 5438819 -138347636 + MER5A DNA MER1_type 1 171 -18 215 31 31 0 chr12 5438972 5439004 -138347451 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 260 334 138 2 chr12 5439136 5439308 -138347147 - MIR SINE MIR -68 194 15 197 303 66 0 chr12 5439664 5439740 -138346715 + L2 LINE L2 3114 3194 -78 221 0 35 0 chr12 5440063 5440092 -138346363 + (TC)n Simple_repeat Simple_repeat 1 30 0 187 329 63 0 chr12 5440481 5440560 -138345895 + L2 LINE L2 3111 3194 -78 307 272 52 29 chr12 5440663 5440799 -138345656 + MIR SINE MIR 110 248 -14 448 280 161 16 chr12 5440889 5441075 -138345380 - MIR SINE MIR -28 234 22 2018 119 0 10 chr12 5441652 5441964 -138344491 + AluSc SINE Alu 1 309 0 266 231 15 46 chr12 5442243 5442308 -138344147 + L2 LINE L2 3241 3303 -10 1368 153 0 5 chr12 5442871 5443093 -138343362 - AluSg/x SINE Alu -8 304 84 340 333 19 62 chr12 5443799 5443961 -138342494 - MIR SINE MIR -83 179 25 264 294 0 0 chr12 5444398 5444568 -138341887 + (TG)n Simple_repeat Simple_repeat 1 170 0 260 241 224 35 chr12 5446500 5446616 -138339839 - MIR3 SINE MIR -65 143 6 1234 131 60 0 chr12 5446945 5447144 -138339311 - MER20 DNA MER1_type -5 214 4 349 233 233 7 chr12 5448168 5448318 -138338137 + MER5A DNA MER1_type 6 189 0 181 333 0 71 chr12 5449357 5449456 -138336999 + L2 LINE L2 2996 3087 -185 1870 141 7 3 chr12 5449579 5449877 -138336578 + AluSg SINE Alu 1 299 -11 520 272 10 57 chr12 5449877 5450080 -138336375 + MIR SINE MIR 62 254 -8 221 269 71 14 chr12 5451321 5451427 -138335028 + MIR SINE MIR 32 142 -66 509 253 91 19 chr12 5451567 5451904 -138334551 + MLT1J2 LTR MaLR 13 442 -8 332 341 24 8 chr12 5451986 5452112 -138334343 + MIR3 SINE MIR 30 157 -51 261 333 53 26 chr12 5452473 5452587 -138333868 + MER91C DNA MER1_type 24 140 0 * 506 336 68 65 chr12 5452587 5452963 -138333492 + L2 LINE L2 2891 3267 -5 226 296 45 11 chr12 5454214 5454302 -138332153 + L2 LINE L2 3139 3229 -43 1373 248 47 77 chr12 5454364 5454695 -138331760 + MER77 LTR ERV1 121 477 -200 1798 153 0 7 chr12 5454695 5454989 -138331466 - AluSx SINE Alu -20 292 1 1373 248 47 77 chr12 5454989 5455181 -138331274 + MER77 LTR ERV1 477 673 -4 866 289 29 8 chr12 5455648 5455894 -138330561 - MIR SINE MIR 0 262 12 356 250 0 0 chr12 5456247 5456327 -138330128 + MER116 DNA Mariner 1 80 0 327 304 99 44 chr12 5456560 5456741 -138329714 + MIR SINE MIR 1 191 -71 254 209 105 35 chr12 5457735 5457821 -138328634 + L2 LINE L2 2969 3060 -212 * 484 355 69 43 chr12 5457816 5457909 -138328546 - L2 LINE L2 0 3313 3224 2463 56 0 0 chr12 5457909 5458215 -138328240 + AluY SINE Alu 1 306 -5 484 355 69 43 chr12 5458215 5458467 -138327988 - L2 LINE L2 -89 3224 2959 250 289 22 11 chr12 5459293 5459383 -138327072 + MIR SINE MIR 65 155 -107 1239 197 16 100 chr12 5459873 5460193 -138326262 + AluJb SINE Alu 2 294 -8 1380 196 36 0 chr12 5461192 5461493 -138324962 - MER33 DNA MER1_type -8 316 5 301 274 32 73 chr12 5463736 5463860 -138322595 + L2 LINE L2 3195 3313 0 252 149 0 0 chr12 5463860 5463907 -138322548 + (TGGA)n Simple_repeat Simple_repeat 2 48 0 2480 160 24 12 chr12 5464003 5464427 -138322028 + MSTB1 LTR MaLR 4 432 0 565 101 13 0 chr12 5464694 5464773 -138321682 - MADE1 DNA Mariner 0 80 1 240 304 13 38 chr12 5465823 5465902 -138320553 - L2 LINE L2 -5 3267 3191 369 75 0 0 chr12 5466560 5466613 -138319842 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 348 331 21 35 chr12 5466648 5466793 -138319662 + MIR SINE MIR 49 191 -71 399 253 131 19 chr12 5467614 5467774 -138318681 + MIR SINE MIR 30 204 -58 265 313 45 37 chr12 5468425 5468559 -138317896 - MER5A DNA MER1_type -5 184 50 * 419 335 13 13 chr12 5468443 5468595 -138317860 + MER5A DNA MER1_type 35 186 -3 213 275 14 14 chr12 5468975 5469044 -138317411 + GA-rich Low_complexity Low_complexity 4 72 0 888 212 4 11 chr12 5469208 5469477 -138316978 + AluY SINE Alu 44 310 -1 290 329 72 0 chr12 5469478 5469645 -138316810 - L1ME LINE L1 -300 5870 5692 264 344 32 0 chr12 5469661 5469818 -138316637 - L1ME LINE L1 -478 5643 5482 208 244 0 35 chr12 5469925 5470011 -138316444 + A-rich Low_complexity Low_complexity 2 84 0 699 264 148 15 chr12 5470744 5471250 -138315205 - L1ME3 LINE L1 -287 5883 5300 376 276 24 0 chr12 5471542 5471665 -138314790 - L1MA10 LINE L1 -3 6331 6206 623 119 0 0 chr12 5471668 5471752 -138314703 + AluJ/FLAM SINE Alu 2 85 -227 304 315 34 68 chr12 5471779 5471815 -138314640 - L1MA10 LINE L1 -311 6001 5966 2799 210 34 61 chr12 5471815 5472171 -138314284 - L1MD3 LINE L1 -743 5403 5039 249 98 0 0 chr12 5472171 5472212 -138314243 + (CA)n Simple_repeat Simple_repeat 2 42 0 2799 210 34 61 chr12 5472212 5472412 -138314043 - L1MD3 LINE L1 -1107 5039 5492 2439 62 3 0 chr12 5472412 5472720 -138313735 - AluY SINE Alu -2 309 1 2799 210 34 61 chr12 5472720 5473477 -138312978 - L1MD3 LINE L1 -653 5493 4717 278 137 20 0 chr12 5475586 5475637 -138310818 + MER53 DNA DNA 138 189 0 294 293 57 19 chr12 5475809 5475915 -138310540 + L2 LINE L2 3195 3304 -9 1187 111 38 64 chr12 5475999 5476234 -138310221 - L1PA11 LINE L1 0 6174 5946 1659 141 39 0 chr12 5476234 5476517 -138309938 - L1P LINE L1 -1502 4644 4351 306 345 42 18 chr12 5480188 5480356 -138306099 - MIR3 SINE MIR -1 207 36 971 264 115 21 chr12 5480375 5480844 -138305611 + MER113 DNA MER1_type? 1 513 -8 193 343 29 20 chr12 5482357 5482459 -138303996 - MIR SINE MIR -63 145 43 565 253 28 50 chr12 5483066 5483248 -138303207 + MIR3 SINE MIR 9 186 -22 2609 234 82 17 chr12 5483733 5484842 -138301613 - MER69B DNA AcHobo 0 1226 1 358 294 123 28 chr12 5485154 5485365 -138301090 + L1ME4a LINE L1 5730 5960 -161 1325 223 38 11 chr12 5485531 5485818 -138300637 - AluJb SINE Alu -7 295 1 203 176 0 0 chr12 5486017 5486051 -138300404 + GA-rich Low_complexity Low_complexity 1 34 0 346 282 0 0 chr12 5487105 5487190 -138299265 - L2 LINE L2 -3 3310 3226 579 288 21 46 chr12 5488446 5488686 -138297769 - L1ME LINE L1 -314 5807 5574 266 299 11 35 chr12 5489251 5489338 -138297117 - L2 LINE L2 0 3272 3188 2473 197 85 4 chr12 5489538 5490080 -138296375 - L1MB7 LINE L1 -8 6176 5591 674 303 118 36 chr12 5490203 5490794 -138295661 - L1ME4a LINE L1 -209 5912 5348 352 374 14 0 chr12 5491148 5491287 -138295168 + L3b LINE CR1 1257 1397 -186 385 243 84 24 chr12 5491608 5491771 -138294684 - MIR SINE MIR -19 189 17 574 270 44 22 chr12 5491979 5492180 -138294275 + MIR SINE MIR 60 262 0 237 196 0 0 chr12 5492242 5492298 -138294157 + CT-rich Low_complexity Low_complexity 3 58 0 211 292 0 0 chr12 5492305 5492353 -138294102 - L2 LINE L2 -10 3262 3215 275 282 65 100 chr12 5492506 5492676 -138293779 - MIR3 SINE MIR -14 194 31 349 302 43 9 chr12 5493307 5493423 -138293032 + MIR SINE MIR 26 145 -63 189 0 0 0 chr12 5493558 5493579 -138292876 + (T)n Simple_repeat Simple_repeat 1 21 0 364 351 0 0 chr12 5494257 5494371 -138292084 + L2 LINE L2 3195 3308 -5 340 254 75 67 chr12 5495402 5495536 -138290919 - MIR SINE MIR -108 154 20 2353 35 0 3 chr12 5495813 5496131 -138290324 + AluY SINE Alu 1 317 0 234 224 20 0 chr12 5497068 5497117 -138289338 + L2 LINE L2 3137 3186 -86 195 250 133 0 chr12 5497985 5498045 -138288410 - MIR SINE MIR -95 113 46 794 218 93 5 chr12 5498108 5498301 -138288154 + MER44D DNA MER2_type 1 480 -129 233 234 0 0 chr12 5499414 5499461 -138286994 + L2 LINE L2 3225 3271 -1 1241 249 23 26 chr12 5499881 5500223 -138286232 - L1ME1 LINE L1 -18 6148 5808 3085 130 45 2 chr12 5500244 5500728 -138285727 - L1PB2 LINE L1 -1 6150 5646 1218 250 56 75 chr12 5500728 5501140 -138285315 - MLT2B3 LTR ERVL 0 554 151 2666 43 19 0 chr12 5501142 5501464 -138284991 - L1PA7 LINE L1 -246 5908 5581 531 300 37 16 chr12 5502028 5502218 -138284237 - MIR3 SINE MIR -7 201 8 952 316 8 0 chr12 5502387 5502643 -138283812 - MIR SINE MIR -4 258 1 302 267 37 82 chr12 5503683 5503818 -138282637 - L2 LINE L2 0 3313 3185 416 285 48 42 chr12 5503844 5504009 -138282446 - MIR3 SINE MIR -27 181 16 330 333 26 52 chr12 5504114 5504267 -138282188 - L3b LINE CR1 -136 1447 1299 187 316 119 18 chr12 5504623 5504791 -138281664 + MIR SINE MIR 7 191 -71 1759 152 19 13 chr12 5504913 5505223 -138281232 - AluSx SINE Alu 0 312 1 357 301 78 0 chr12 5505399 5505502 -138280953 + L2 LINE L2 3203 3313 0 243 299 31 21 chr12 5505758 5505855 -138280600 - MIR3 SINE MIR -2 206 109 1919 119 0 33 chr12 5506668 5506971 -138279484 + AluSg SINE Alu 1 293 -17 2018 129 3 0 chr12 5507514 5507825 -138278630 - AluSx SINE Alu 0 312 1 599 289 34 5 chr12 5508472 5508676 -138277779 - ERVL LTR ERVL -3793 1971 1762 2317 81 0 0 chr12 5508820 5509148 -138277307 + AluY SINE Alu 1 311 0 334 289 82 59 chr12 5510035 5510305 -138276150 - ERVL LTR ERVL -5142 622 347 696 198 96 0 chr12 5510661 5510818 -138275637 + MER45C DNA AcHobo 25 196 -757 212 86 29 0 chr12 5511332 5511367 -138275088 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 267 318 12 0 chr12 5512266 5512351 -138274104 + GA-rich Low_complexity Low_complexity 3 88 0 25 65 0 0 chr12 5512583 5512629 -138273826 + AT_rich Low_complexity Low_complexity 1 46 0 1151 244 70 45 chr12 5513139 5513495 -138272960 - MLT1A2 LTR MaLR -4 370 6 1182 291 154 28 chr12 5514526 5515582 -138270873 - L2 LINE L2 0 3313 2111 566 275 16 11 chr12 5515587 5515769 -138270686 - MER117 DNA MER1_type -5 192 10 779 156 133 64 chr12 5515967 5516098 -138270357 + MER5A DNA MER1_type 3 150 -39 1449 156 122 0 chr12 5516098 5516368 -138270087 - AluSx SINE Alu -9 303 1 779 156 133 64 chr12 5516368 5516409 -138270046 + MER5A DNA MER1_type 150 187 -2 316 311 149 19 chr12 5516935 5517096 -138269359 + MIR SINE MIR 21 202 -60 1030 202 160 93 chr12 5517161 5517612 -138268843 + MLT1D LTR MaLR 21 501 -4 180 210 99 62 chr12 5518465 5518546 -138267909 + L2 LINE L2 476 559 -2755 401 331 86 43 chr12 5519452 5519650 -138266805 - L3b LINE CR1 0 1583 1368 937 167 6 13 chr12 5519650 5519806 -138266649 + FRAM SINE Alu 1 155 -11 401 331 86 43 chr12 5519806 5519885 -138266570 - L3b LINE CR1 -215 1368 1294 180 250 25 75 chr12 5520219 5520299 -138266156 - L3 LINE CR1 -143 1434 1359 590 276 20 15 chr12 5520538 5520734 -138265721 + MER117 DNA MER1_type 1 197 0 184 200 29 0 chr12 5520804 5520839 -138265616 + L2 LINE L2 3230 3265 -7 2335 75 0 3 chr12 5521704 5522010 -138264445 + AluY SINE Alu 1 305 -6 591 232 187 25 chr12 5522072 5522270 -138264185 + MIR SINE MIR 31 260 -2 430 99 127 0 chr12 5522337 5522408 -138264047 + MADE1 DNA Mariner 1 80 0 402 39 0 0 chr12 5523107 5523159 -138263296 + (TG)n Simple_repeat Simple_repeat 1 52 0 273 57 0 0 chr12 5523159 5523194 -138263261 + (GA)n Simple_repeat Simple_repeat 2 36 0 213 260 0 115 chr12 5524888 5524984 -138261471 + L3b LINE CR1 1180 1264 -319 1679 232 127 12 chr12 5528055 5528550 -138257905 - MLT1H1 LTR MaLR -2 553 2 236 259 23 76 chr12 5530239 5530265 -138256190 - L1MC4 LINE L1 -1304 6738 6712 321 26 0 0 chr12 5530265 5530303 -138256152 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 259 23 76 chr12 5530303 5530407 -138256048 - L1MC4 LINE L1 -1330 6712 6615 260 246 29 0 chr12 5530441 5530510 -138255945 + GA-rich Low_complexity Low_complexity 4 74 0 461 239 101 112 chr12 5530527 5530954 -138255501 + MLT1J1 LTR MaLR 1 422 -24 242 325 36 0 chr12 5531329 5531412 -138255043 + L3 LINE CR1 1405 1490 -87 641 104 21 10 chr12 5531421 5531517 -138254938 + AluSc SINE Alu 198 294 -15 2376 41 24 0 chr12 5531586 5531876 -138254579 - AluY SINE Alu -2 309 13 214 200 0 0 chr12 5533287 5533327 -138253128 + A-rich Low_complexity Low_complexity 1 40 0 259 282 87 68 chr12 5533556 5533659 -138252796 + L2 LINE L2 3143 3247 -25 650 289 122 28 chr12 5533669 5534029 -138252426 + MLT1I LTR MaLR 14 407 -2 483 18 0 0 chr12 5534054 5534110 -138252345 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 266 319 106 28 chr12 5534299 5534440 -138252015 - L2 LINE L2 -22 3291 3140 1496 179 0 14 chr12 5534755 5535034 -138251421 + AluJb SINE Alu 1 275 -37 221 352 51 40 chr12 5535085 5535261 -138251194 - L2 LINE L2 -555 2759 2582 335 250 202 58 chr12 5536777 5536965 -138249490 - MIR SINE MIR -41 221 7 1525 194 19 10 chr12 5537253 5537538 -138248917 + AluJb SINE Alu 1 292 -128 294 29 0 0 chr12 5537538 5537573 -138248882 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 1525 194 19 10 chr12 5537573 5537704 -138248751 + AluJb SINE Alu 292 420 0 498 185 19 0 chr12 5537596 5537887 -138248568 + GA-rich Low_complexity Low_complexity 4 296 0 270 152 103 52 chr12 5539342 5539460 -138246995 - MIR SINE MIR -64 144 30 286 277 12 24 chr12 5539791 5539874 -138246581 + MIR SINE MIR 22 103 -105 1348 208 75 13 chr12 5544546 5544854 -138241601 + L1ME3 LINE L1 5825 6151 -11 22 0 0 0 chr12 5545121 5545143 -138241312 + AT_rich Low_complexity Low_complexity 1 22 0 2324 160 149 9 chr12 5546427 5546890 -138239565 + MER74A LTR ERVL 1 528 -30 363 23 0 0 chr12 5547455 5547499 -138238956 + (CA)n Simple_repeat Simple_repeat 2 45 0 393 292 32 50 chr12 5548826 5549045 -138237410 + LTR16C LTR ERVL 253 467 -24 754 284 34 13 chr12 5549650 5549886 -138236569 + LTR16A1 LTR ERVL 217 457 0 519 274 57 6 chr12 5550077 5550234 -138236221 + MIR SINE MIR 20 184 -78 243 206 89 123 chr12 5553387 5553533 -138232922 - MIR SINE MIR -66 142 2 1672 159 18 4 chr12 5554020 5554296 -138232159 - MLT1A1 LTR MaLR 0 365 86 2765 148 31 67 chr12 5554296 5554493 -138231962 - LTR26B LTR ERV1 0 531 328 2168 110 62 39 chr12 5554493 5554849 -138231606 - THE1B LTR MaLR 0 364 1 2765 148 31 67 chr12 5554849 5555173 -138231282 - LTR26B LTR ERV1 -203 328 29 1327 155 155 8 chr12 5555174 5555337 -138231118 - AluSx SINE Alu -16 296 158 510 62 0 104 chr12 5555337 5555433 -138231022 - L1PA5 LINE L1 0 6154 6069 1327 155 155 8 chr12 5555433 5555527 -138230928 - AluSx SINE Alu -154 158 1 321 51 0 0 chr12 5555527 5555566 -138230889 - LTR26B LTR ERV1 -492 39 1 409 176 47 24 chr12 5555569 5555654 -138230801 - MLT1A1 LTR MaLR -287 87 1 292 310 47 21 chr12 5555697 5555851 -138230604 - MIR3 SINE MIR -64 144 3 211 284 15 0 chr12 5557979 5558046 -138228409 + L2 LINE L2 3246 3313 0 305 302 9 9 chr12 5558059 5558165 -138228290 - MER69 DNA AcHobo 0 2526 2421 228 281 105 26 chr12 5559713 5559827 -138226628 + MIR SINE MIR 24 146 -62 183 231 0 0 chr12 5559941 5559980 -138226475 + L2 LINE L2 3255 3293 -20 258 32 0 0 chr12 5560773 5560804 -138225651 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1982 126 7 3 chr12 5560813 5561098 -138225357 - AluSg SINE Alu -24 286 1 1133 81 0 0 chr12 5561098 5561234 -138225221 - AluSq/x SINE Alu -177 136 1 208 268 30 105 chr12 5561559 5561703 -138224752 - MIR SINE MIR -63 145 21 319 222 41 12 chr12 5561737 5561908 -138224547 + (TA)n Simple_repeat Simple_repeat 1 176 0 283 200 12 71 chr12 5563488 5563573 -138222882 + MIR SINE MIR 101 180 -82 436 267 96 37 chr12 5563983 5564170 -138222285 - MIR SINE MIR -42 220 23 234 279 15 0 chr12 5565488 5565556 -138220899 - MARNA DNA Mariner -106 480 412 2027 101 62 7 chr12 5567334 5567622 -138218833 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr12 5567757 5567787 -138218668 + (TG)n Simple_repeat Simple_repeat 2 31 0 247 291 45 22 chr12 5568297 5568431 -138218024 - MLT1J2 LTR MaLR -239 211 75 251 281 94 31 chr12 5569914 5570042 -138216413 + L2 LINE L2 3178 3313 0 1681 151 7 53 chr12 5571140 5571444 -138215011 - AluJo SINE Alu -22 290 1 396 147 11 53 chr12 5571579 5571674 -138214781 + MIR SINE MIR 61 151 -111 1735 205 108 24 chr12 5572036 5572461 -138213994 - MLT1C LTR MaLR -6 461 1 326 284 57 28 chr12 5572645 5572821 -138213634 + MER5A DNA MER1_type 3 183 -6 268 258 76 61 chr12 5575793 5575925 -138210530 - L2 LINE L2 0 3313 3180 2183 101 7 16 chr12 5576158 5576465 -138209990 - AluY SINE Alu -7 304 1 697 269 111 1 chr12 5576707 5576918 -138209537 + MIR SINE MIR 5 237 -25 724 213 8 130 chr12 5577031 5577270 -138209185 - MER63A DNA MER1_type 0 210 1 28 79 0 0 chr12 5577747 5577810 -138208645 + AT_rich Low_complexity Low_complexity 1 63 0 687 281 31 13 chr12 5577881 5578109 -138208346 - MIR SINE MIR -10 252 21 662 141 67 15 chr12 5578124 5578259 -138208196 + Ricksha_a DNA DNA 12 153 -1028 * 5639 190 49 51 chr12 5578227 5578995 -138207460 + Ricksha DNA DNA 1712 2481 -765 2453 68 0 0 chr12 5578995 5579312 -138207143 - AluY SINE Alu 0 317 1 5639 190 49 51 chr12 5579312 5580078 -138206377 + Ricksha DNA DNA 2481 3246 0 397 232 176 0 chr12 5580260 5580385 -138206070 + MER96 DNA MER1_type? 27 173 -2 5541 150 27 9 chr12 5580618 5581547 -138204908 - L1MA9 LINE L1 0 6312 5367 267 250 0 0 chr12 5581984 5582040 -138204415 + MIR SINE MIR 76 131 -77 182 265 0 0 chr12 5582411 5582460 -138203995 - L2 LINE L2 -1 3312 3264 315 321 0 0 chr12 5582607 5582691 -138203764 - L2 LINE L2 -2 3270 3187 2902 117 2 9 chr12 5582741 5583170 -138203285 + L1PB3 LINE L1 5726 6151 -3 1061 211 5 10 chr12 5583658 5583867 -138202588 - MLT1C LTR MaLR -3 464 257 1728 202 123 40 chr12 5583982 5584421 -138202034 + MLT2B1 LTR ERVL 1 485 -35 213 39 0 0 chr12 5584421 5584447 -138202008 + (CA)n Simple_repeat Simple_repeat 2 27 0 1728 202 123 40 chr12 5584447 5584487 -138201968 + MLT2B1 LTR ERVL 485 520 0 567 318 81 0 chr12 5585527 5585763 -138200692 + MIR SINE MIR 5 259 -3 371 246 15 52 chr12 5585875 5586009 -138200446 - MIR3 SINE MIR -4 204 76 223 354 108 49 chr12 5586020 5587024 -138199431 - L2 LINE L2 -15 3257 2099 2511 72 10 0 chr12 5587024 5587331 -138199124 + AluY SINE Alu 1 310 -1 223 354 108 49 chr12 5587331 5587914 -138198541 - L2 LINE L2 -1173 2099 1552 214 239 0 0 chr12 5588185 5588231 -138198224 - MIR SINE MIR -130 78 33 1540 174 83 0 chr12 5589268 5589533 -138196922 + AluJo SINE Alu 1 287 -25 948 271 161 21 chr12 5589611 5590046 -138196409 - MLT1H1 LTR MaLR -19 536 41 687 269 60 39 chr12 5590587 5591045 -138195410 + MLT1H LTR MaLR 22 587 -3 1045 175 18 51 chr12 5591621 5591838 -138194617 + MER20 DNA MER1_type 7 216 -3 1808 237 45 30 chr12 5591974 5592501 -138193954 + L1ME LINE L1 3449 3983 -2163 6529 79 6 12 chr12 5592520 5593397 -138193058 + L1PA10 LINE L1 5298 6168 0 326 47 0 0 chr12 5593397 5593440 -138193015 - MADE1 DNA Mariner -37 43 1 288 333 68 12 chr12 5593518 5593680 -138192775 + MIR SINE MIR 36 206 -56 1259 167 0 5 chr12 5595281 5595485 -138190970 - AluSg/x SINE Alu -14 298 96 318 303 148 12 chr12 5596449 5596611 -138189844 + MIR3 SINE MIR 12 195 -13 2233 88 0 63 chr12 5596774 5597091 -138189364 - AluY SINE Alu -14 297 1 502 270 33 20 chr12 5597347 5597499 -138188956 - MIR3 SINE MIR -9 199 46 668 282 39 0 chr12 5598942 5599148 -138187307 - MIR SINE MIR 0 262 49 259 362 65 7 chr12 5599202 5599340 -138187115 - MIR3 SINE MIR -62 146 1 287 306 9 28 chr12 5599733 5599841 -138186614 - MIR SINE MIR -78 184 79 1231 287 132 30 chr12 5599850 5600763 -138185692 + L2 LINE L2 2326 3313 0 449 273 27 21 chr12 5601750 5601899 -138184556 + MIR SINE MIR 16 163 -63 268 311 168 19 chr12 5602666 5602827 -138183628 + MIR SINE MIR 53 237 -25 189 107 0 0 chr12 5603277 5603305 -138183150 + (TG)n Simple_repeat Simple_repeat 1 28 0 6365 58 1 11 chr12 5606390 5607214 -138179241 - L1PA5 LINE L1 0 6154 5364 226 279 135 0 chr12 5607214 5607318 -138179137 - MER113 DNA MER1_type? -176 345 228 253 292 35 42 chr12 5607417 5607561 -138178894 + L1ME LINE L1 4055 4197 -1949 352 300 118 30 chr12 5607657 5608130 -138178325 + L1ME LINE L1 4330 4844 -1302 328 315 88 21 chr12 5608174 5608412 -138178043 + L1ME LINE L1 5017 5270 -876 315 319 98 43 chr12 5608497 5608845 -138177610 + L1ME LINE L1 5384 5750 -412 396 295 23 66 chr12 5608858 5609116 -138177339 + L2 LINE L2 3006 3252 -61 43603 32 24 2 chr12 5610558 5616576 -138169879 - L1PA3 LINE L1 0 6155 1 1546 196 76 25 chr12 5617144 5617511 -138168944 + MLT1B LTR MaLR 5 390 0 278 249 68 79 chr12 5618292 5618469 -138167986 - MIR3 SINE MIR 0 208 34 459 325 39 10 chr12 5619845 5620051 -138166404 - LTR16A LTR ERVL -101 349 138 225 277 15 0 chr12 5620099 5620164 -138166291 - LTR16A1 LTR ERVL -319 138 73 623 286 40 0 chr12 5620185 5620360 -138166095 + MIR3 SINE MIR 21 202 -6 1547 158 104 188 chr12 5620780 5621598 -138164857 - Zaphod DNA AcHobo -1 4030 3282 945 285 0 12 chr12 5621599 5621841 -138164614 - Zaphod DNA AcHobo -3383 648 410 546 196 0 0 chr12 5621848 5621945 -138164510 + FLAM_A SINE Alu 34 130 -12 976 303 110 16 chr12 5621945 5622328 -138164127 - Zaphod DNA AcHobo -3604 427 9 228 350 50 25 chr12 5622436 5622556 -138163899 + L2 LINE L2 2620 2742 -572 210 150 0 0 chr12 5622565 5622605 -138163850 + (A)n Simple_repeat Simple_repeat 1 40 0 302 367 33 37 chr12 5622631 5622846 -138163609 + L2 LINE L2 2764 2977 -337 246 294 89 0 chr12 5623231 5623348 -138163107 + MIR SINE MIR 45 178 -69 1970 159 0 13 chr12 5623416 5623731 -138162724 + AluSx SINE Alu 1 311 -1 180 347 13 27 chr12 5624225 5624300 -138162155 + MIR3 SINE MIR 126 199 -9 21 36 0 0 chr12 5624322 5624350 -138162105 + AT_rich Low_complexity Low_complexity 1 28 0 357 380 28 6 chr12 5624596 5624775 -138161680 + MIR SINE MIR 20 202 -60 364 302 85 32 chr12 5626460 5626649 -138159806 - MIR SINE MIR -15 247 49 338 138 0 62 chr12 5627120 5627185 -138159270 - L2 LINE L2 -1085 2229 2169 740 287 38 43 chr12 5627820 5628242 -138158213 + L1MCc LINE L1 35 454 -5969 662 319 101 18 chr12 5628696 5629239 -138157216 + HAL1b LINE L1 53 640 -708 1710 231 150 67 chr12 5629574 5630537 -138155918 + L1MC5 LINE L1 6505 7530 -431 338 296 52 35 chr12 5630620 5630792 -138155663 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr12 5630796 5630903 -138155552 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr12 5630823 5630907 -138155548 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 298 341 6 17 chr12 5631449 5631622 -138154833 + GA-rich Low_complexity Low_complexity 4 174 0 511 270 0 16 chr12 5632549 5632675 -138153780 + L2 LINE L2 3190 3313 0 581 276 13 84 chr12 5633105 5633330 -138153125 - MIR SINE MIR -5 257 49 263 296 281 0 chr12 5633480 5633683 -138152772 - MIR SINE MIR -1 261 2 203 226 19 19 chr12 5634179 5634232 -138152223 - L2 LINE L2 -3 3269 3217 418 310 78 0 chr12 5634426 5634578 -138151877 + MIR3 SINE MIR 33 197 -11 214 246 31 0 chr12 5635691 5635756 -138150699 - MIR SINE MIR -48 214 148 21 0 0 0 chr12 5636582 5636603 -138149852 + AT_rich Low_complexity Low_complexity 1 21 0 206 146 36 18 chr12 5637070 5637125 -138149330 + T-rich Low_complexity Low_complexity 4 59 0 353 252 131 44 chr12 5638326 5638532 -138147923 + MER5C DNA MER1_type 86 309 -15 324 207 133 30 chr12 5638613 5638748 -138147707 + MER103 DNA DNA 8 156 -10 1093 254 87 61 chr12 5639078 5639276 -138147179 + MLT1J LTR MaLR 3 194 -317 1954 97 23 0 chr12 5639276 5639533 -138146922 + AluSc SINE Alu 44 306 -3 1093 254 87 61 chr12 5639533 5639794 -138146661 + MLT1J LTR MaLR 194 474 -37 217 159 23 0 chr12 5639794 5639838 -138146617 + T-rich Low_complexity Low_complexity 2 46 0 2493 230 63 35 chr12 5639869 5640623 -138145832 - L1M4 LINE L1 -5720 822 5 924 283 79 41 chr12 5641136 5641504 -138144951 + L2 LINE L2 2157 2538 -776 1473 300 40 30 chr12 5641819 5642581 -138143874 + L2 LINE L2 2543 3313 0 334 291 39 0 chr12 5643492 5643595 -138142860 - MER103 DNA DNA -57 109 3 440 211 112 59 chr12 5643658 5643810 -138142645 + MER20B DNA MER1_type 43 202 -17 279 348 50 14 chr12 5643856 5643997 -138142458 - MIR3 SINE MIR -58 150 5 541 302 77 32 chr12 5644166 5644407 -138142048 - MIR SINE MIR -6 256 7 1802 176 10 3 chr12 5645018 5645325 -138141130 + AluSx SINE Alu 1 309 -3 11392 152 35 18 chr12 5645329 5648301 -138138154 + L1MA5 LINE L1 3046 6065 -235 5137 75 11 11 chr12 5648312 5648964 -138137491 - L1PA11 LINE L1 0 6174 5523 241 111 67 44 chr12 5648964 5649009 -138137446 + L1MA5 LINE L1 6050 6095 -205 2309 218 55 42 chr12 5650496 5651530 -138134925 - L1MEc LINE L1 -3333 2882 1860 252 221 126 0 chr12 5651530 5651625 -138134830 - Charlie8 DNA MER1_type -2261 156 50 266 227 106 0 chr12 5651754 5651820 -138134635 - L1MC/D LINE L1 -1999 5809 5737 314 252 102 95 chr12 5652052 5652199 -138134256 - MIR3 SINE MIR -28 180 33 253 279 41 141 chr12 5652236 5652455 -138134000 - L3 LINE CR1 -9 1568 1379 2430 66 0 7 chr12 5652455 5652758 -138133697 + AluY SINE Alu 1 301 -10 253 279 41 141 chr12 5652758 5652807 -138133648 - L3 LINE CR1 -198 1379 1327 948 319 125 47 chr12 5652842 5653313 -138133142 - L3 LINE CR1 -412 1165 733 1514 192 0 17 chr12 5653313 5653610 -138132845 + AluJo SINE Alu 1 292 -20 2106 72 8 0 chr12 5653611 5653873 -138132582 + AluSc SINE Alu 44 307 -2 948 319 125 47 chr12 5653873 5654173 -138132282 - L3 LINE CR1 -843 734 331 21 0 0 0 chr12 5654274 5654295 -138132160 + AT_rich Low_complexity Low_complexity 1 21 0 207 240 60 0 chr12 5655331 5655381 -138131074 + MIR3 SINE MIR 118 170 -38 961 204 21 5 chr12 5655454 5655640 -138130815 - MER5A DNA MER1_type 0 189 1 1224 198 107 0 chr12 5655701 5655944 -138130511 + Tigger4(Zombi) DNA MER2_type 1 269 -2462 1367 127 23 18 chr12 5655945 5656166 -138130289 + Tigger4(Zombi) DNA MER2_type 2510 2731 0 348 302 112 9 chr12 5656963 5657079 -138129376 - L2 LINE L2 -6 3266 3139 396 245 54 68 chr12 5658250 5658397 -138128058 + MER63A DNA MER1_type 61 205 -5 4398 113 9 3 chr12 5659742 5660379 -138126076 - L1PA16 LINE L1 -180 5986 5346 846 175 11 51 chr12 5660379 5660550 -138125905 + L1PA16 LINE L1 5994 6163 -3 633 251 24 86 chr12 5661092 5661347 -138125108 - MIR SINE MIR -3 259 21 22 35 0 0 chr12 5662210 5662239 -138124216 + AT_rich Low_complexity Low_complexity 1 29 0 206 240 0 20 chr12 5662506 5662556 -138123899 + CT-rich Low_complexity Low_complexity 3 51 0 233 345 112 0 chr12 5662745 5662861 -138123594 + L2 LINE L2 3137 3265 -7 2113 132 0 19 chr12 5663123 5663441 -138123014 + AluSx SINE Alu 1 312 0 1350 201 27 20 chr12 5663685 5663983 -138122472 + AluJo SINE Alu 1 300 -12 200 291 0 0 chr12 5664067 5664122 -138122333 + CT-rich Low_complexity Low_complexity 5 59 0 549 314 114 37 chr12 5664441 5664878 -138121577 + L3 LINE CR1 811 1281 -296 313 295 85 0 chr12 5665060 5665189 -138121266 - MIR SINE MIR -42 220 81 7583 47 14 3 chr12 5665609 5667238 -138119217 + L1PA7 LINE L1 4517 6154 0 5112 168 7 8 chr12 5667483 5668375 -138118080 - L1MB7 LINE L1 -1 6183 5293 275 235 286 8 chr12 5670031 5670150 -138116305 + MIR3 SINE MIR 54 205 -3 236 285 73 73 chr12 5670153 5670304 -138116151 + L3b LINE CR1 1293 1443 -140 1798 141 3 37 chr12 5670366 5670665 -138115790 - AluJo SINE Alu -23 289 1 183 214 24 0 chr12 5671288 5671330 -138115125 + L2 LINE L2 3263 3305 -8 386 273 31 72 chr12 5671784 5671978 -138114477 + MIR3 SINE MIR 20 205 -3 451 224 34 84 chr12 5672101 5672280 -138114175 - L2 LINE L2 0 3313 3144 300 359 60 8 chr12 5673266 5673383 -138113072 + L2 LINE L2 3150 3272 0 222 303 8 59 chr12 5673391 5673510 -138112945 - MIR SINE MIR -60 202 90 241 235 0 59 chr12 5673711 5673779 -138112676 + HsTC2 DNA Tc2 28 91 -1807 325 232 0 0 chr12 5674535 5674604 -138111851 - MER96 DNA MER1_type? 0 175 107 25 0 0 0 chr12 5674821 5674846 -138111609 + AT_rich Low_complexity Low_complexity 1 25 0 3129 235 68 50 chr12 5675366 5676309 -138110146 + L1MB7 LINE L1 16 975 -5567 * 7347 238 53 42 chr12 5676297 5678652 -138107803 + L1MB7 LINE L1 803 3130 -3552 1368 215 79 27 chr12 5678652 5679019 -138107436 + MLT1B LTR MaLR 5 390 0 7347 238 53 42 chr12 5679019 5682345 -138104110 + L1MB7 LINE L1 3130 6620 -62 538 250 183 11 chr12 5682407 5682587 -138103868 - MLT1K LTR MaLR -2 586 376 349 232 158 0 chr12 5682626 5682708 -138103747 - MLT1K LTR MaLR -305 283 189 9366 117 8 30 chr12 5683001 5683686 -138102769 - Tigger1 DNA MER2_type 0 2418 1778 1528 194 3 48 chr12 5683686 5684001 -138102454 - AluJo SINE Alu -11 301 1 9366 117 8 30 chr12 5684001 5684725 -138101730 - Tigger1 DNA MER2_type -640 1778 1040 330 64 0 0 chr12 5684735 5684782 -138101673 + Alu SINE Alu 262 308 0 * 780 254 91 14 chr12 5684779 5685055 -138101400 + MLT1C LTR MaLR 171 467 0 2254 110 0 3 chr12 5685111 5685412 -138101043 + AluSg SINE Alu 1 300 -10 676 68 19 10 chr12 5685415 5685518 -138100937 + (GAAA)n Simple_repeat Simple_repeat 1 104 0 1842 145 68 43 chr12 5685930 5686282 -138100173 - MER46B DNA MER2_type 0 236 1 1002 174 56 0 chr12 5686921 5687099 -138099356 + L1MD3 LINE L1 7797 7984 -11 209 32 0 32 chr12 5687115 5687146 -138099309 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 455 254 8 54 chr12 5687922 5688052 -138098403 - MIR SINE MIR -75 187 64 247 281 79 36 chr12 5688402 5688541 -138097914 - MIR SINE MIR -116 146 2 221 139 23 0 chr12 5688656 5688699 -138097756 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 445 255 94 13 chr12 5688841 5688990 -138097465 + MIR3 SINE MIR 27 187 -21 1687 165 0 0 chr12 5690367 5690640 -138095815 - AluJb SINE Alu -39 273 1 298 286 22 11 chr12 5691762 5691853 -138094602 - MIR SINE MIR -61 147 56 2397 91 3 0 chr12 5692220 5692528 -138093927 - AluSg1 SINE Alu 0 309 1 419 258 0 48 chr12 5693410 5693534 -138092921 + MIR3 SINE MIR 5 122 -86 233 253 0 46 chr12 5693877 5693964 -138092491 + MIR SINE MIR 174 256 -6 305 243 9 90 chr12 5694354 5694465 -138091990 + MIR3 SINE MIR 85 186 -22 357 182 149 33 chr12 5694799 5694920 -138091535 + MER5A DNA MER1_type 1 135 -54 248 180 328 0 chr12 5694921 5694982 -138091473 - Tigger5 DNA MER2_type -1 2322 2242 * 298 282 13 0 chr12 5694972 5695050 -138091405 + Tigger5 DNA MER2_type 2242 2320 -3 * 425 190 13 13 chr12 5695050 5695128 -138091327 - Tigger5 DNA MER2_type -2245 78 1 182 241 52 35 chr12 5695235 5695293 -138091162 + L2 LINE L2 3213 3271 -1 477 239 0 0 chr12 5695587 5695675 -138090780 - MIR3 SINE MIR -51 157 70 234 359 34 83 chr12 5695904 5696169 -138090286 + L2 LINE L2 2943 3194 -78 265 211 46 92 chr12 5696743 5696852 -138089603 + L3b LINE CR1 1230 1333 -250 442 285 93 89 chr12 5696928 5697174 -138089281 - MIR SINE MIR -8 254 8 443 253 62 14 chr12 5697174 5697320 -138089135 + MER117 DNA MER1_type 2 154 -43 418 221 11 21 chr12 5697325 5697420 -138089035 + MER117 DNA MER1_type 104 197 0 2670 148 26 16 chr12 5698971 5699465 -138086990 + L1MC2 LINE L1 5846 6344 0 246 128 0 0 chr12 5700582 5700621 -138085834 + (TG)n Simple_repeat Simple_repeat 1 39 0 308 356 22 85 chr12 5700927 5701419 -138085036 - L2 LINE L2 0 3272 2812 557 301 165 54 chr12 5701489 5702047 -138084408 - L2 LINE L2 -707 2607 1988 201 39 0 0 chr12 5702848 5702874 -138083581 + (TGGGGG)n Simple_repeat Simple_repeat 2 27 0 406 222 9 46 chr12 5703177 5703285 -138083170 + MER20B DNA MER1_type 3 106 -677 459 0 0 0 chr12 5703894 5703945 -138082510 + (TG)n Simple_repeat Simple_repeat 2 52 0 344 321 65 27 chr12 5704430 5704614 -138081841 - MIR3 SINE MIR -15 193 3 1914 174 67 59 chr12 5704988 5705449 -138081006 + MLT1C LTR MaLR 3 467 0 921 265 28 16 chr12 5706306 5706559 -138079896 - MIR SINE MIR -2 260 5 346 292 98 76 chr12 5706852 5707084 -138079371 + L1ME4a LINE L1 5598 5824 -297 2351 68 0 7 chr12 5707084 5707393 -138079062 + AluSc SINE Alu 1 307 -2 346 292 98 76 chr12 5707393 5707486 -138078969 + L1ME4a LINE L1 5824 5914 -207 1498 191 3 31 chr12 5707486 5707805 -138078650 + AluJo SINE Alu 1 310 -2 346 292 98 76 chr12 5707805 5707989 -138078466 + L1ME4a LINE L1 5914 6119 -2 336 150 17 17 chr12 5708278 5708338 -138078117 - MIR SINE MIR -87 175 116 283 321 28 46 chr12 5708435 5708544 -138077911 + MIR SINE MIR 3 109 -153 * 597 275 15 35 chr12 5708536 5708736 -138077719 - L2 LINE L2 0 3313 3118 240 328 90 0 chr12 5708745 5708879 -138077576 + MIR SINE MIR 117 262 0 291 325 149 30 chr12 5710303 5710571 -138075884 + L2 LINE L2 2970 3269 -3 284 250 182 13 chr12 5711826 5711980 -138074475 - MIR SINE MIR -34 228 42 211 282 64 39 chr12 5713271 5713349 -138073106 + MIR SINE MIR 152 231 -31 368 204 194 0 chr12 5713745 5713843 -138072612 - MER5B DNA MER1_type -1 177 61 420 20 0 0 chr12 5714141 5714190 -138072265 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 265 15 0 chr12 5714629 5714697 -138071758 + (TTCA)n Simple_repeat Simple_repeat 3 71 0 230 284 125 11 chr12 5714719 5714807 -138071648 + L2 LINE L2 2677 2774 -540 211 188 16 16 chr12 5715560 5715624 -138070831 + CT-rich Low_complexity Low_complexity 1 64 0 183 298 64 43 chr12 5716559 5716653 -138069802 + L2 LINE L2 3178 3273 -40 248 235 244 17 chr12 5717793 5717908 -138068547 - L2 LINE L2 0 3313 3173 225 324 106 47 chr12 5718224 5718394 -138068061 - MIR3 SINE MIR -17 191 12 422 193 73 37 chr12 5718690 5718799 -138067656 - MIR3 SINE MIR -19 189 77 221 221 301 26 chr12 5720146 5720259 -138066196 + MIR SINE MIR 103 246 -16 476 230 66 71 chr12 5720602 5720798 -138065657 - MIR3 SINE MIR -6 202 8 314 319 43 7 chr12 5722948 5723089 -138063366 - MIR SINE MIR -109 153 8 306 0 0 0 chr12 5724972 5725006 -138061449 + (CA)n Simple_repeat Simple_repeat 2 35 0 471 18 0 0 chr12 5726866 5726922 -138059533 + (TG)n Simple_repeat Simple_repeat 2 57 0 194 73 55 18 chr12 5727446 5727501 -138058954 + (CCGCG)n Simple_repeat Simple_repeat 1 57 0 198 208 0 0 chr12 5729719 5729767 -138056688 + GA-rich Low_complexity Low_complexity 2 49 0 184 293 0 0 chr12 5730744 5730785 -138055670 + MIR3 SINE MIR 139 179 -29 435 319 89 0 chr12 5731598 5731755 -138054700 + MIR SINE MIR 70 240 -22 210 303 72 10 chr12 5733145 5733245 -138053210 + MIR SINE MIR 31 140 -68 184 241 3 24 chr12 5734507 5734603 -138051852 - MIR SINE MIR -3 259 196 224 300 0 0 chr12 5734604 5734664 -138051791 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 265 182 0 78 chr12 5734666 5734743 -138051712 - L1MC4 LINE L1 -1336 6706 6636 452 293 24 37 chr12 5734806 5734970 -138051485 + MIR SINE MIR 24 185 -77 * 537 244 42 36 chr12 5734968 5735125 -138051330 - MIR SINE MIR -62 146 21 331 227 118 27 chr12 5735148 5735258 -138051197 - MIR SINE MIR -63 145 26 424 364 56 0 chr12 5735385 5735547 -138050908 - MER91A DNA MER1_type -25 171 1 2346 51 0 0 chr12 5735995 5736287 -138050168 - AluY SINE Alu -19 292 1 353 322 20 18 chr12 5736766 5736943 -138049512 - MIR3 SINE MIR -28 180 4 200 180 0 60 chr12 5736991 5737041 -138049414 + CT-rich Low_complexity Low_complexity 2 48 0 1719 144 0 61 chr12 5737425 5737738 -138048717 - AluSx SINE Alu -18 294 1 596 326 82 14 chr12 5737918 5738212 -138048243 + L3 LINE CR1 1251 1564 -13 21 36 0 0 chr12 5738379 5738407 -138048048 + AT_rich Low_complexity Low_complexity 1 28 0 1357 178 74 0 chr12 5738490 5738759 -138047696 - AluJb SINE Alu -23 289 1 430 275 15 65 chr12 5738824 5739024 -138047431 + L1ME LINE L1 120 309 -5810 * 1808 225 129 117 chr12 5738992 5739483 -138046972 + L1M4 LINE L1 2463 2946 -3183 753 192 8 0 chr12 5739483 5739613 -138046842 + FLAM_C SINE Alu 7 137 -6 1808 225 129 117 chr12 5739613 5740265 -138046190 + L1M4 LINE L1 2946 3588 -2541 2680 106 0 11 chr12 5740265 5740633 -138045822 - THE1B LTR MaLR 0 364 1 1808 225 129 117 chr12 5740633 5740661 -138045794 + L1M4 LINE L1 3588 3614 -2515 360 0 0 0 chr12 5740661 5740701 -138045754 + (TA)n Simple_repeat Simple_repeat 2 41 0 1808 225 129 117 chr12 5740701 5740850 -138045605 + L1M4 LINE L1 3614 3760 -2369 351 0 0 0 chr12 5740850 5740889 -138045566 + (CA)n Simple_repeat Simple_repeat 2 40 0 1808 225 129 117 chr12 5740889 5741027 -138045428 + L1M4 LINE L1 3760 4073 -2056 1114 239 9 44 chr12 5741029 5741347 -138045108 + L1ME2 LINE L1 5734 6040 -124 673 288 118 37 chr12 5742197 5743499 -138042956 + L1ME LINE L1 715 2172 -4138 308 312 77 17 chr12 5743591 5743953 -138042502 + L1ME LINE L1 2245 2628 -3501 504 186 31 0 chr12 5743980 5744077 -138042378 + MLT1B LTR MaLR 3 102 -272 1335 240 110 6 chr12 5744078 5744432 -138042023 + MSTD LTR MaLR 2 392 -4 837 168 49 27 chr12 5744439 5744748 -138041707 + MLT1B LTR MaLR 97 390 0 717 291 101 6 chr12 5744754 5745101 -138041354 + L1ME LINE L1 2665 3044 -3085 * 764 249 76 22 chr12 5745098 5745283 -138041172 + AluJo SINE Alu 100 294 -18 3766 256 77 43 chr12 5745285 5746172 -138040283 + L1ME LINE L1 3063 3918 -2235 381 43 0 0 chr12 5746172 5746219 -138040236 + (CA)n Simple_repeat Simple_repeat 1 47 0 3766 256 77 43 chr12 5746219 5746372 -138040083 + L1ME LINE L1 3918 4064 -2089 419 33 250 0 chr12 5746372 5746432 -138040023 - MADE1 DNA Mariner -4 76 2 3766 256 77 43 chr12 5746432 5748111 -138038344 + L1ME LINE L1 4064 5889 -264 819 183 20 26 chr12 5748122 5748275 -138038180 + FRAM SINE Alu 1 143 -33 250 211 0 0 chr12 5748285 5748337 -138038118 + L1MC4 LINE L1 6652 6703 -1339 231 303 90 0 chr12 5748295 5748384 -138038071 - L1MC4 LINE L1 -1339 6703 6607 * 198 191 0 0 chr12 5748388 5748430 -138038025 + (TA)n Simple_repeat Simple_repeat 2 43 0 825 271 23 26 chr12 5748436 5748702 -138037753 + L1ME3A LINE L1 5878 6142 -11 315 233 159 101 chr12 5749331 5749520 -138036935 + MIR SINE MIR 26 225 -37 696 293 59 43 chr12 5749979 5750235 -138036220 + MIR SINE MIR 3 262 0 368 397 22 6 chr12 5750469 5750648 -138035807 + MIR3 SINE MIR 20 201 -7 24 53 0 0 chr12 5751117 5751155 -138035300 + AT_rich Low_complexity Low_complexity 1 38 0 615 306 73 46 chr12 5751386 5751867 -138034588 + L3 LINE CR1 565 1058 -519 655 199 96 143 chr12 5752273 5752512 -138033943 + MIR SINE MIR 9 227 -35 463 278 30 30 chr12 5752508 5752677 -138033778 + MIR SINE MIR 86 254 -8 * 197 263 156 50 chr12 5753184 5753350 -138033105 + MIR SINE MIR 21 227 -35 213 300 29 14 chr12 5753808 5753878 -138032577 + L2 LINE L2 3201 3271 -1 196 226 32 16 chr12 5754718 5754780 -138031675 + L2 LINE L2 2908 2970 -302 2141 172 5 52 chr12 5754994 5755401 -138031054 + MLT1B LTR MaLR 1 388 -2 192 288 15 61 chr12 5756333 5756399 -138030056 + L2 LINE L2 3209 3271 -1 342 67 0 0 chr12 5756439 5756484 -138029971 + (CA)n Simple_repeat Simple_repeat 1 45 0 246 293 37 0 chr12 5758146 5758228 -138028227 + MIR SINE MIR 91 175 -87 427 306 44 50 chr12 5758638 5758818 -138027637 - MIR3 SINE MIR -10 198 20 240 111 0 0 chr12 5759200 5759236 -138027219 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 336 245 104 43 chr12 5759768 5759931 -138026524 - MIR SINE MIR -33 229 57 400 289 122 44 chr12 5760153 5760537 -138025918 - MLT1J LTR MaLR -25 486 73 559 291 139 36 chr12 5760702 5760925 -138025530 - MIR SINE MIR -14 248 3 343 374 7 7 chr12 5761140 5761279 -138025176 - L2 LINE L2 0 3272 3134 779 296 78 21 chr12 5761606 5762044 -138024411 - L2 LINE L2 -230 3042 2578 2168 107 0 25 chr12 5762072 5762389 -138024066 + AluSx SINE Alu 1 309 -3 352 349 40 7 chr12 5764598 5764750 -138021705 - MIR SINE MIR -81 181 25 788 219 69 94 chr12 5764825 5765217 -138021238 - MLT1B LTR MaLR 0 390 9 2837 0 3 0 chr12 5765289 5765592 -138020863 - AluYa5 SINE Alu -7 304 1 315 309 12 30 chr12 5766630 5766798 -138019657 + GA-rich Low_complexity Low_complexity 1 165 0 261 0 0 0 chr12 5766978 5767007 -138019448 + (CTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr12 5767074 5767104 -138019351 + AT_rich Low_complexity Low_complexity 1 30 0 318 358 20 55 chr12 5767473 5767552 -138018903 + L3 LINE CR1 1373 1453 -124 1346 205 78 61 chr12 5767552 5768011 -138018444 + MLT1C LTR MaLR 1 467 0 318 358 20 55 chr12 5768011 5768132 -138018323 + L3 LINE CR1 1453 1566 -11 21 71 0 0 chr12 5768178 5768220 -138018235 + AT_rich Low_complexity Low_complexity 1 42 0 988 223 19 23 chr12 5768382 5768597 -138017858 + MER20 DNA MER1_type 1 214 -5 287 273 58 33 chr12 5768691 5768812 -138017643 - MIR3 SINE MIR -82 126 3 230 315 74 62 chr12 5771571 5771733 -138014722 - L2 LINE L2 -190 3082 2919 2347 118 128 10 chr12 5771768 5772151 -138014304 - MSTA LTR MaLR 0 428 1 191 310 116 72 chr12 5772501 5772933 -138013522 - L2 LINE L2 -832 2482 2032 947 264 98 46 chr12 5773009 5773490 -138012965 - MLT1J LTR MaLR -3 508 3 662 287 11 0 chr12 5773548 5773722 -138012733 + MER5A DNA MER1_type 13 188 -1 205 326 0 0 chr12 5773769 5773818 -138012637 - L2 LINE L2 -13 3259 3211 2003 148 10 0 chr12 5773858 5774161 -138012294 - AluJb SINE Alu -6 306 1 255 271 85 39 chr12 5774729 5774858 -138011597 - L2 LINE L2 -2 3270 3136 268 268 42 14 chr12 5775792 5775863 -138010592 + MIR3 SINE MIR 87 159 -49 1284 219 107 44 chr12 5777103 5777364 -138009091 + Charlie4a DNA MER1_type 2 245 -1716 3223 83 42 16 chr12 5777364 5777751 -138008704 + MLT2A1 LTR ERVL 1 402 -42 315 0 0 0 chr12 5777751 5777786 -138008669 + (TG)n Simple_repeat Simple_repeat 2 36 0 3223 83 42 16 chr12 5777786 5777831 -138008624 + MLT2A1 LTR ERVL 402 444 0 1284 219 107 44 chr12 5777831 5778045 -138008410 + Charlie4a DNA MER1_type 245 507 -1 242 239 28 28 chr12 5778603 5778674 -138007781 + L2 LINE L2 3200 3270 -2 627 248 12 12 chr12 5778777 5778938 -138007517 - MER97a DNA MER1_type? -715 179 19 229 289 99 49 chr12 5779989 5780131 -138006324 - MIR3 SINE MIR -94 114 2 1384 71 0 0 chr12 5780219 5780387 -138006068 + AluY SINE Alu 144 311 0 264 306 36 36 chr12 5781400 5781511 -138004944 - MIR SINE MIR -81 127 17 212 302 12 12 chr12 5781546 5781632 -138004823 + MIR3 SINE MIR 82 167 -41 283 327 184 0 chr12 5782118 5782286 -138004169 + MLT1K LTR MaLR 1 199 -389 883 212 75 37 chr12 5782306 5782547 -138003908 + MLT1K LTR MaLR 326 575 -13 245 251 11 109 chr12 5782861 5783044 -138003411 - HAL1b LINE L1 -1106 242 78 2007 148 0 10 chr12 5783232 5783537 -138002918 - AluSx SINE Alu -10 302 1 471 241 68 0 chr12 5785413 5785546 -138000909 + MIR SINE MIR 109 250 -12 293 209 9 118 chr12 5785747 5785857 -138000598 + L2 LINE L2 3213 3310 -3 2286 113 0 0 chr12 5786380 5786689 -137999766 + AluSq SINE Alu 5 313 0 2063 118 31 3 chr12 5787225 5787513 -137998942 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr12 5787725 5787748 -137998707 + (TG)n Simple_repeat Simple_repeat 2 24 0 187 355 37 45 chr12 5789080 5789322 -137997133 + L2 LINE L2 2816 3055 -217 1937 221 25 2 chr12 5789360 5789758 -137996697 + MER63C DNA MER1_type 3 409 -521 243 0 0 0 chr12 5789762 5789789 -137996666 + (TG)n Simple_repeat Simple_repeat 2 28 0 2073 171 95 16 chr12 5789789 5790222 -137996233 + MER63C DNA MER1_type 436 902 -28 384 328 110 74 chr12 5790278 5790668 -137995787 - L2 LINE L2 -32 3240 2837 21 0 0 0 chr12 5790757 5790778 -137995677 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr12 5790905 5790929 -137995526 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1703 184 14 0 chr12 5790931 5791209 -137995246 - AluJo SINE Alu -30 282 1 2991 60 2 50 chr12 5792735 5793138 -137993317 - L1PA7 LINE L1 -2 6152 5769 746 189 13 38 chr12 5793268 5793427 -137993028 + L1PB3 LINE L1 5996 6150 -4 3003 168 24 9 chr12 5793436 5793977 -137992478 - L1MC1 LINE L1 -304 6029 5481 216 67 0 0 chr12 5794336 5794366 -137992089 + (CAA)n Simple_repeat Simple_repeat 2 31 0 302 303 193 0 chr12 5794528 5794647 -137991808 + L2 LINE L2 2892 3033 -239 236 347 29 23 chr12 5996217 5996390 -137790065 + MIR SINE MIR 54 227 -35 228 228 35 0 chr12 5997272 5997329 -137789126 - MIR3 SINE MIR -49 159 101 1295 233 62 48 chr12 5997354 5997852 -137788603 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr12 5999761 5999782 -137786673 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 219 36 0 0 chr12 5999781 5999809 -137786646 + (GA)n Simple_repeat Simple_repeat 1 28 0 449 305 7 20 chr12 6000222 6000373 -137786082 + MIR SINE MIR 49 197 -65 784 310 89 43 chr12 6000451 6002224 -137784231 - L1MEd LINE L1 -743 5386 3533 21 36 0 0 chr12 6002288 6002316 -137784139 + AT_rich Low_complexity Low_complexity 1 28 0 1294 188 30 4 chr12 6002321 6002555 -137783900 + AluJo SINE Alu 45 284 -28 22 0 0 0 chr12 6002679 6002701 -137783754 + AT_rich Low_complexity Low_complexity 1 22 0 1640 283 32 45 chr12 6002726 6003530 -137782925 - L1MEd LINE L1 -2846 3283 2495 2471 133 3 3 chr12 6003530 6003891 -137782564 - THE1B LTR MaLR -3 361 1 1640 283 32 45 chr12 6003891 6004125 -137782330 - L1MEd LINE L1 -3634 2495 2259 431 257 46 135 chr12 6004356 6004683 -137781772 - L1ME3A LINE L1 -220 5950 5653 1219 157 4 58 chr12 6004776 6005018 -137781437 - MER46A DNA MER2_type -4 232 4 481 231 56 65 chr12 6005039 6005360 -137781095 - L1MEd LINE L1 -5017 1102 785 247 270 18 81 chr12 6005955 6006066 -137780389 + MLT1L LTR MaLR 20 123 -492 562 247 141 38 chr12 6006088 6006351 -137780104 + MLT1L LTR MaLR 322 611 -4 507 301 87 41 chr12 6006536 6006802 -137779653 + MLT1I LTR MaLR 114 391 -18 252 0 0 0 chr12 6007216 6007244 -137779211 + (A)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chr12 6007830 6007858 -137778597 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 247 56 18 chr12 6007908 6008357 -137778098 - Charlie4a DNA MER1_type -17 491 26 264 311 142 0 chr12 6008835 6008983 -137777472 - MIR SINE MIR -6 256 88 202 333 0 0 chr12 6009137 6009200 -137777255 - L3 LINE CR1 -156 1421 1359 476 274 154 48 chr12 6009271 6009628 -137776827 - L2 LINE L2 -4 3309 2915 3111 190 40 49 chr12 6009814 6010293 -137776162 + MER21B LTR ERV1 1 474 -389 2289 122 0 0 chr12 6010293 6010604 -137775851 - AluSq SINE Alu -2 311 1 3111 190 40 49 chr12 6010604 6010798 -137775657 + MER21B LTR ERV1 474 668 -195 461 132 95 3 chr12 6010797 6010886 -137775569 + MER21A LTR ERV1 773 912 0 * 6189 134 12 7 chr12 6011063 6012003 -137774452 + LTR5 LTR ERVK 1 944 -25 1456 270 123 83 chr12 6012079 6013442 -137773013 - L2 LINE L2 -621 2693 1276 332 236 173 0 chr12 6013686 6013796 -137772659 + MIR SINE MIR 63 191 -71 1491 120 87 40 chr12 6013805 6014081 -137772374 + Tigger2a DNA MER2_type 1 289 -145 11417 183 18 8 chr12 6014115 6015845 -137770610 - L1PB2 LINE L1 0 6151 4376 180 0 0 0 chr12 6015845 6015865 -137770590 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11417 183 18 8 chr12 6015865 6017488 -137768967 - L1PB2 LINE L1 -1775 4376 2771 7127 119 52 45 chr12 6017489 6019315 -137767140 + L1PB2 LINE L1 1664 3501 -3361 867 191 20 0 chr12 6019318 6019465 -137766990 + Tigger2a DNA MER2_type 294 443 -1 604 259 27 84 chr12 6019708 6020005 -137766450 + MLT1J LTR MaLR 4 283 -228 625 276 33 0 chr12 6020142 6020294 -137766161 + MER115 DNA AcHobo 152 308 -385 304 303 155 13 chr12 6020304 6020459 -137765996 - L2 LINE L2 -252 3061 2885 217 238 0 0 chr12 6022156 6022198 -137764257 + CT-rich Low_complexity Low_complexity 3 44 0 199 373 62 8 chr12 6022674 6022872 -137763583 + MIR SINE MIR 2 212 -50 829 164 14 0 chr12 6023475 6023621 -137762834 - FAM SINE Alu -7 42 1 2601 137 29 14 chr12 6024067 6024484 -137761971 + MSTB LTR MaLR 4 426 0 200 236 258 0 chr12 6025314 6025403 -137761052 - MIR SINE MIR -115 147 36 182 266 71 53 chr12 6025521 6025634 -137760821 + MIR SINE MIR 16 130 -132 6174 97 17 2 chr12 6026110 6027075 -137759380 + L1PB1 LINE L1 5137 6113 -38 218 176 0 0 chr12 6027075 6027109 -137759346 + polypurine Low_complexity Low_complexity 2 35 0 839 89 11 56 chr12 6027110 6027290 -137759165 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 283 267 13 0 chr12 6027848 6027923 -137758532 + MIR SINE MIR 78 153 -109 1506 193 102 55 chr12 6028027 6028515 -137757940 + MER69 DNA AcHobo 2013 2523 -3 1971 119 29 10 chr12 6029412 6029722 -137756733 - L1PB1 LINE L1 -17 6134 5819 2480 60 0 13 chr12 6029722 6030024 -137756431 - AluY SINE Alu -13 298 1 1029 92 0 7 chr12 6030024 6030166 -137756289 - L1PB1 LINE L1 -544 5607 5467 388 319 63 49 chr12 6030915 6031282 -137755173 + HAL1b LINE L1 219 590 -758 983 230 84 16 chr12 6031291 6031627 -137754828 - LTR16A LTR ERVL 0 457 81 1347 160 29 19 chr12 6031905 6032208 -137754247 - MER61C LTR ERV1 -30 404 1 257 288 0 25 chr12 6032792 6032910 -137753545 + L1ME4a LINE L1 6007 6121 0 2035 170 67 22 chr12 6033396 6033802 -137752653 + MER21B LTR ERV1 1 424 -439 368 232 43 70 chr12 6033803 6033988 -137752467 + L2 LINE L2 3112 3291 -22 2488 45 7 32 chr12 6033993 6034302 -137752153 - AluY SINE Alu -10 301 1 3036 127 2 7 chr12 6034398 6034861 -137751594 + MER4C LTR ERV1 3 463 -2 2399 85 3 0 chr12 6035431 6035724 -137750731 + AluSp SINE Alu 1 294 -19 295 216 27 27 chr12 6036182 6036256 -137750199 - MER117 DNA MER1_type -119 78 5 642 238 101 11 chr12 6036317 6036506 -137749949 + L2 LINE L2 3089 3294 -19 1008 66 0 0 chr12 6036506 6036643 -137749812 + (GGAGA)n Simple_repeat Simple_repeat 5 141 0 21 0 0 0 chr12 6036693 6036714 -137749741 + AT_rich Low_complexity Low_complexity 1 21 0 526 308 45 0 chr12 6037647 6037868 -137748587 + MIR SINE MIR 29 259 -3 347 304 70 18 chr12 6040701 6040872 -137745583 - MIR SINE MIR -72 190 11 182 150 25 0 chr12 6041009 6041049 -137745406 + GA-rich Low_complexity Low_complexity 5 45 0 206 231 0 0 chr12 6041492 6041531 -137744924 + (CA)n Simple_repeat Simple_repeat 1 39 0 240 267 58 42 chr12 6041531 6041651 -137744804 - L3b LINE CR1 -184 1399 1278 667 198 81 137 chr12 6042005 6042157 -137744298 + MER112 DNA MER1_type 23 157 -103 2028 62 11 19 chr12 6042157 6042417 -137744038 - AluY SINE Alu -9 302 45 667 198 81 137 chr12 6042417 6042512 -137743943 + MER112 DNA MER1_type 157 256 -4 330 277 106 8 chr12 6042825 6043006 -137743449 + MIR SINE MIR 62 262 0 182 288 38 25 chr12 6043583 6043663 -137742792 + MIR SINE MIR 63 143 -65 261 244 12 24 chr12 6044491 6044573 -137741882 - MIR3 SINE MIR -29 179 99 218 32 32 0 chr12 6045710 6045741 -137740714 + (TC)n Simple_repeat Simple_repeat 2 33 0 241 236 197 8 chr12 6046572 6046699 -137739756 + L2 LINE L2 3159 3309 -4 2011 171 32 6 chr12 6049436 6049775 -137736680 - MER7A DNA MER2_type 0 346 1 315 288 48 16 chr12 6050912 6051037 -137735418 - MIR SINE MIR -34 228 100 1078 213 4 30 chr12 6052847 6053077 -137733378 - MER58A DNA MER1_type 0 224 1 321 280 119 42 chr12 6053552 6053788 -137732667 + L2 LINE L2 2606 2859 -455 399 233 11 116 chr12 6054152 6054341 -137732114 + MIR SINE MIR 93 261 -1 401 311 102 0 chr12 6054440 6054607 -137731848 + MIR3 SINE MIR 25 208 0 316 368 42 58 chr12 6056763 6057141 -137729314 + L2 LINE L2 2897 3268 -4 2649 49 0 0 chr12 6057392 6057696 -137728759 + AluY SINE Alu 1 304 -7 283 338 49 21 chr12 6058900 6059042 -137727413 - L2 LINE L2 0 3272 3127 223 286 170 20 chr12 6060621 6060768 -137725687 - L3 LINE CR1 -6 1571 1403 254 294 109 50 chr12 6061144 6061263 -137725192 - L2 LINE L2 -1 3271 3146 228 275 43 14 chr12 6062452 6062521 -137723934 + MIR SINE MIR 52 122 -86 269 275 30 46 chr12 6062848 6062979 -137723476 - MIR3 SINE MIR -45 163 35 310 273 13 0 chr12 6063319 6063396 -137723059 + GA-rich Low_complexity Low_complexity 1 78 0 1582 67 91 0 chr12 6064130 6064339 -137722116 - MER30 DNA MER1_type 0 230 3 1526 242 116 21 chr12 6064829 6064921 -137721534 - LTR48B LTR ERV1 0 644 562 2157 83 35 3 chr12 6064921 6065210 -137721245 + AluSq SINE Alu 1 298 -15 1526 242 116 21 chr12 6065210 6065633 -137720822 - LTR48B LTR ERV1 -82 562 80 332 216 41 41 chr12 6065679 6065776 -137720679 - MER34 LTR ERV1 -445 97 1 225 227 91 23 chr12 6065776 6065864 -137720591 + L2 LINE L2 3133 3226 -46 189 318 84 9 chr12 6066217 6066324 -137720131 - L2 LINE L2 -3 3310 3196 229 325 53 30 chr12 6066598 6066767 -137719688 - L2 LINE L2 -565 2749 2577 420 287 43 37 chr12 6067705 6067869 -137718586 - MIR SINE MIR -50 212 48 184 129 0 0 chr12 6068281 6068312 -137718143 + L2 LINE L2 3238 3268 -4 1792 177 0 6 chr12 6068570 6068881 -137717574 + AluJb SINE Alu 1 309 -3 201 312 26 13 chr12 6068966 6069043 -137717412 - L3 LINE CR1 -14 1563 1486 1771 174 24 10 chr12 6069213 6069383 -137717072 - AluJo SINE Alu -10 302 125 240 35 0 0 chr12 6069383 6069412 -137717043 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1771 174 24 10 chr12 6069412 6069539 -137716916 - AluJo SINE Alu -187 125 1 249 274 55 14 chr12 6069541 6069614 -137716841 - L2 LINE L2 -26 3246 3171 336 306 100 12 chr12 6069956 6070126 -137716329 + L1ME LINE L1 5512 5696 -425 551 134 0 0 chr12 6070129 6070211 -137716244 + AluJ/FLAM SINE Alu 21 102 -210 485 249 83 83 chr12 6070883 6071088 -137715367 - MIR SINE MIR -38 224 20 3013 107 30 0 chr12 6071113 6071553 -137714902 - L1PA13 LINE L1 0 6163 5711 2011 143 7 0 chr12 6072375 6072669 -137713786 - AluSx SINE Alu -13 299 4 181 319 208 0 chr12 6073189 6073333 -137713122 - MIR3 SINE MIR -29 179 6 1328 202 90 42 chr12 6074105 6074462 -137711993 + MLT1A2 LTR MaLR 1 374 0 327 276 39 24 chr12 6074484 6074611 -137711844 + MIR SINE MIR 134 262 0 391 78 0 31 chr12 6074690 6074754 -137711701 + MADE1 DNA Mariner 19 80 0 184 291 79 63 chr12 6074778 6074905 -137711550 - L3 LINE CR1 -3 1574 1446 407 339 58 5 chr12 6075038 6075262 -137711193 + MIR SINE MIR 5 240 -22 460 307 126 53 chr12 6075690 6076120 -137710335 + HAL1 LINE L1 4 464 -2043 1996 259 75 37 chr12 6076134 6076273 -137710182 + HAL1 LINE L1 1074 1206 -1301 1785 172 0 14 chr12 6076273 6076570 -137709885 - AluJb SINE Alu -19 293 1 1996 259 75 37 chr12 6076570 6077272 -137709183 + HAL1 LINE L1 1206 1947 -560 2526 68 0 0 chr12 6077680 6077987 -137708468 + AluY SINE Alu 1 307 -4 554 343 82 8 chr12 6078053 6078293 -137708162 - L2 LINE L2 -695 2619 2341 210 37 0 0 chr12 6078293 6078320 -137708135 + (GGA)n Simple_repeat Simple_repeat 2 28 0 554 343 82 8 chr12 6078320 6078446 -137708009 - L2 LINE L2 -973 2341 2226 21 0 0 0 chr12 6078754 6078775 -137707680 + AT_rich Low_complexity Low_complexity 1 21 0 718 277 100 31 chr12 6080315 6080705 -137705750 - MER113 DNA MER1_type? -104 417 1 212 314 0 0 chr12 6080772 6080823 -137705632 + (CA)n Simple_repeat Simple_repeat 2 52 0 250 304 126 33 chr12 6080948 6081162 -137705293 + MARNA DNA Mariner 175 408 -178 280 222 48 0 chr12 6081476 6081539 -137704916 - MIR SINE MIR -158 104 39 3645 126 8 4 chr12 6081544 6082069 -137704386 + MER1A DNA MER1_type 1 527 0 236 279 58 19 chr12 6082547 6082651 -137703804 - MIR3 SINE MIR -11 197 90 483 156 31 4 chr12 6083883 6084121 -137702334 + (TA)n Simple_repeat Simple_repeat 1 244 0 621 203 6 0 chr12 6084134 6084484 -137701971 + (TA)n Simple_repeat Simple_repeat 1 352 0 417 170 29 6 chr12 6084495 6084666 -137701789 + (TA)n Simple_repeat Simple_repeat 1 175 0 236 176 0 39 chr12 6084701 6084752 -137701703 + LTR66 LTR ERVL 391 439 -171 375 23 0 0 chr12 6084833 6084877 -137701578 + (CA)n Simple_repeat Simple_repeat 1 44 0 2154 112 7 3 chr12 6084989 6085285 -137701170 - AluSg SINE Alu -13 297 1 376 269 59 59 chr12 6085493 6085679 -137700776 + LTR67 LTR ERVL 363 548 -9 255 220 100 60 chr12 6086386 6086486 -137699969 + MIR SINE MIR 18 121 -141 219 69 0 0 chr12 6087231 6087260 -137699195 + (TG)n Simple_repeat Simple_repeat 1 29 0 1053 260 136 68 chr12 6088231 6088877 -137697578 + MER21B LTR ERV1 24 713 -150 1521 211 40 3 chr12 6090172 6090522 -137695933 - MLT1A1 LTR MaLR -2 363 1 347 291 36 0 chr12 6090865 6091030 -137695425 + (CACAC)n Simple_repeat Simple_repeat 5 175 0 345 319 34 15 chr12 6091079 6091605 -137694850 + (CACAC)n Simple_repeat Simple_repeat 1 535 0 724 301 99 17 chr12 6091958 6092303 -137694152 - LTR16C LTR ERVL -30 461 89 464 272 50 28 chr12 6092437 6092617 -137693838 - MIR SINE MIR -65 197 14 229 169 138 15 chr12 6093470 6093493 -137692962 - REP3 LTR ERV -359 203 173 411 240 208 42 chr12 6093493 6093685 -137692770 + MLT1J2 LTR MaLR 4 227 -223 201 74 0 0 chr12 6095591 6095618 -137690837 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 240 228 0 0 chr12 6096122 6096179 -137690276 + GA-rich Low_complexity Low_complexity 2 58 0 1844 155 30 0 chr12 6097006 6097309 -137689146 + AluSx SINE Alu 1 312 0 309 109 0 0 chr12 6098560 6098615 -137687840 + (CAGA)n Simple_repeat Simple_repeat 2 56 0 199 222 22 0 chr12 6098654 6098699 -137687756 - MIR SINE MIR -16 246 201 578 302 105 70 chr12 6098939 6099876 -137686579 - L2 LINE L2 -6 3307 2335 255 270 250 0 chr12 6100143 6100243 -137686212 + MIR SINE MIR 19 143 -65 1538 174 0 24 chr12 6102126 6102414 -137684041 + AluJo SINE Alu 1 281 -31 702 246 23 17 chr12 6102803 6102978 -137683477 + MIR SINE MIR 63 238 -24 236 247 0 25 chr12 6102985 6103066 -137683389 + (CGTG)n Simple_repeat Simple_repeat 1 79 0 263 320 191 0 chr12 6103111 6103258 -137683197 + MIR SINE MIR 71 245 -17 256 271 93 86 chr12 6105010 6105150 -137681305 - L2 LINE L2 -7 3265 3125 513 267 103 44 chr12 6105200 6105473 -137680982 + MLT1I LTR MaLR 114 402 -7 546 312 158 6 chr12 6105576 6105906 -137680549 + L2 LINE L2 2929 3308 -5 189 256 23 0 chr12 6107001 6107044 -137679411 + L2 LINE L2 3266 3309 -4 348 253 44 11 chr12 6109193 6109284 -137677171 + L3 LINE CR1 1419 1512 -65 270 0 0 0 chr12 6109915 6109945 -137676510 + (CA)n Simple_repeat Simple_repeat 1 30 0 414 57 0 0 chr12 6110921 6110974 -137675481 + (CA)n Simple_repeat Simple_repeat 2 54 0 262 260 14 14 chr12 6110975 6111048 -137675407 + G-rich Low_complexity Low_complexity 1 73 0 255 61 0 0 chr12 6111655 6111688 -137674767 + (TG)n Simple_repeat Simple_repeat 2 34 0 410 175 48 16 chr12 6111853 6111954 -137674501 + MER5A DNA MER1_type 4 109 -80 254 322 43 26 chr12 6112173 6112288 -137674167 - MIR3 SINE MIR -7 201 85 281 294 46 37 chr12 6112347 6112456 -137673999 - MIR3 SINE MIR -39 169 60 2345 88 0 0 chr12 6112543 6112850 -137673605 - AluY SINE Alu -4 307 1 649 272 160 19 chr12 6113643 6114204 -137672251 - L2 LINE L2 0 3313 2605 7189 52 6 2 chr12 6114739 6115702 -137670753 + L1PA6 LINE L1 5187 6152 -2 359 255 0 11 chr12 6115801 6115895 -137670560 + MER94 DNA DNA 8 100 -34 195 100 0 0 chr12 6116304 6116334 -137670121 + (ATG)n Simple_repeat Simple_repeat 3 32 0 2185 226 181 25 chr12 6116371 6117325 -137669130 + L2 LINE L2 1933 3070 -243 225 0 0 0 chr12 6117379 6117404 -137669051 + (CA)n Simple_repeat Simple_repeat 2 26 0 1748 264 70 27 chr12 6117666 6118724 -137667731 - L1ME3A LINE L1 -315 5838 4722 350 299 84 13 chr12 6118785 6118939 -137667516 - L1ME3A LINE L1 -4373 1937 1773 782 308 61 17 chr12 6118951 6119600 -137666855 - L1ME3A LINE L1 -4585 1725 957 848 103 0 0 chr12 6119601 6119717 -137666738 + AluSg/x SINE Alu 178 293 -17 234 62 0 0 chr12 6119730 6119762 -137666693 + (TG)n Simple_repeat Simple_repeat 2 33 0 214 235 12 24 chr12 6119762 6119847 -137666608 + (TA)n Simple_repeat Simple_repeat 2 85 0 249 304 141 44 chr12 6119950 6120220 -137666235 - L1ME3A LINE L1 -5307 812 517 419 345 55 63 chr12 6120361 6120741 -137665714 - L1ME3A LINE L1 -5739 380 4 438 254 116 7 chr12 6120761 6120899 -137665556 + L2 LINE L2 3160 3312 -1 250 226 151 21 chr12 6121058 6121151 -137665304 + MIR3 SINE MIR 87 191 -17 346 328 9 26 chr12 6122358 6122474 -137663981 + MIR SINE MIR 50 163 -99 243 284 125 97 chr12 6122922 6123098 -137663357 + MIR SINE MIR 62 242 -20 221 360 88 8 chr12 6123303 6123428 -137663027 - L2 LINE L2 -5 3267 3133 1751 120 11 35 chr12 6123940 6124092 -137662363 - AluSc SINE Alu -32 277 134 285 98 0 0 chr12 6124092 6124133 -137662322 + (TG)n Simple_repeat Simple_repeat 2 42 0 1751 120 11 35 chr12 6124133 6124264 -137662191 - AluSc SINE Alu -175 134 1 252 292 67 8 chr12 6124421 6124541 -137661914 - L2 LINE L2 -7 3265 3139 351 297 93 17 chr12 6125032 6125150 -137661305 + MIR SINE MIR 18 144 -64 237 267 46 61 chr12 6125267 6125398 -137661057 + MIR SINE MIR 109 237 -25 1046 168 0 5 chr12 6125724 6125909 -137660546 - FRAM SINE Alu 0 176 1 3102 214 17 12 chr12 6125910 6126564 -137659891 - L1ME1 LINE L1 -8 6158 5502 2769 143 49 92 chr12 6126574 6127181 -137659274 - L1MC3 LINE L1 -7 7778 7198 393 177 57 12 chr12 6127181 6127276 -137659179 - MLT1F1 LTR MaLR -442 125 35 298 292 88 40 chr12 6127688 6127914 -137658541 + MIR SINE MIR 26 262 0 393 375 73 30 chr12 6127920 6128248 -137658207 - L2 LINE L2 -5 3267 2926 196 344 57 13 chr12 6128432 6128589 -137657866 - MIR3 SINE MIR -5 203 40 337 340 111 34 chr12 6129251 6129639 -137656816 + L2 LINE L2 1182 1599 -1715 794 185 12 56 chr12 6129656 6129818 -137656637 - MER5A DNA MER1_type -5 184 30 455 313 82 10 chr12 6129906 6130101 -137656354 - MIR SINE MIR 0 262 54 297 326 73 22 chr12 6130272 6130450 -137656005 - L2 LINE L2 -1354 1960 1774 565 292 97 38 chr12 6130502 6130790 -137655665 + L2 LINE L2 2196 2500 -814 221 292 212 26 chr12 6130923 6131036 -137655419 + L2 LINE L2 3136 3269 -3 324 125 0 62 chr12 6131809 6131873 -137654582 - Alu SINE Alu 0 302 243 810 275 12 33 chr12 6132446 6132690 -137653765 + MIR SINE MIR 23 261 -1 552 175 19 0 chr12 6132690 6132850 -137653605 + (CAT)n Simple_repeat Simple_repeat 1 163 0 859 154 0 17 chr12 6132892 6133246 -137653209 + (CAT)n Simple_repeat Simple_repeat 1 347 0 187 300 67 56 chr12 6134264 6134354 -137652101 + MIR3 SINE MIR 69 159 -49 376 94 0 19 chr12 6134380 6134433 -137652022 + Tigger5 DNA MER2_type 1 52 -2271 422 207 12 0 chr12 6134448 6134530 -137651925 + Tigger5 DNA MER2_type 2239 2321 -2 463 356 62 6 chr12 6134602 6135003 -137651452 + L2 LINE L2 2762 3219 -94 229 287 161 35 chr12 6135546 6135720 -137650735 - L3b LINE CR1 -208 1375 1180 375 233 63 63 chr12 6135975 6136134 -137650321 - MER5A DNA MER1_type 0 189 31 204 385 28 18 chr12 6137098 6137207 -137649248 + L3b LINE CR1 1275 1384 -199 206 313 30 0 chr12 6138397 6138464 -137647991 + (CATG)n Simple_repeat Simple_repeat 2 70 0 807 183 0 0 chr12 6138545 6138725 -137647730 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 597 286 25 37 chr12 6138739 6138980 -137647475 - MIR SINE MIR -12 250 13 189 0 0 0 chr12 6140026 6140047 -137646408 + (CCCCCA)n Simple_repeat Simple_repeat 4 24 0 1713 248 82 19 chr12 6141095 6141559 -137644896 + MER77 LTR ERV1 77 569 -36 8567 137 16 1 chr12 6141864 6144002 -137642453 - L1PA10 LINE L1 -9 6159 4002 284 307 58 14 chr12 6144398 6144537 -137641918 + MIR SINE MIR 17 159 -69 275 254 0 0 chr12 6144594 6144649 -137641806 - L2 LINE L2 -8 3264 3210 303 296 59 15 chr12 6144700 6144835 -137641620 + L1MC5 LINE L1 7773 7913 -48 1526 181 10 36 chr12 6144846 6145155 -137641300 - AluJo SINE Alu -11 301 1 322 294 72 8 chr12 6145158 6145316 -137641139 - MIR SINE MIR -59 203 34 192 40 0 0 chr12 6145830 6145855 -137640600 + (TG)n Simple_repeat Simple_repeat 1 25 0 267 215 0 0 chr12 6146896 6146961 -137639494 + (TG)n Simple_repeat Simple_repeat 1 65 0 308 321 36 14 chr12 6147051 6147191 -137639264 + L3 LINE CR1 235 377 -1200 387 247 113 57 chr12 6147246 6147493 -137638962 - L1MC4a LINE L1 -1642 6166 5906 203 250 125 0 chr12 6147504 6147568 -137638887 + L3 LINE CR1 439 510 -1067 225 140 0 123 chr12 6147885 6147942 -137638513 + L2 LINE L2 3262 3311 -2 513 287 160 0 chr12 6149019 6149207 -137637248 + MIR SINE MIR 42 259 -3 244 229 186 0 chr12 6149322 6149392 -137637063 + L2 LINE L2 3190 3272 -41 222 118 0 0 chr12 6149409 6149443 -137637012 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 334 240 140 0 chr12 6150000 6150100 -137636355 + MIR SINE MIR 33 146 -62 292 266 180 47 chr12 6150731 6150964 -137635491 + L1ME4a LINE L1 5856 6119 -2 2109 138 0 0 chr12 6151087 6151398 -137635057 + AluSx SINE Alu 1 311 -1 1500 325 168 21 chr12 6152927 6153422 -137633033 + L3 LINE CR1 506 927 -650 6571 89 9 3 chr12 6153422 6154631 -137631824 + L1PA11 LINE L1 4961 6174 0 1500 325 168 21 chr12 6154631 6155064 -137631391 + L3 LINE CR1 927 1570 -7 299 273 47 47 chr12 6155541 6155669 -137630786 + MIR3 SINE MIR 78 205 -3 384 97 0 0 chr12 6156629 6156691 -137629764 + (TC)n Simple_repeat Simple_repeat 1 62 0 283 306 153 0 chr12 6158620 6158731 -137627724 - L2 LINE L2 -8 3264 3137 391 274 174 28 chr12 6159148 6159360 -137627095 + MIR SINE MIR 7 249 -13 1595 169 36 10 chr12 6159818 6160120 -137626335 + AluJb SINE Alu 1 310 -2 230 247 195 0 chr12 6160707 6160784 -137625671 - L2 LINE L2 -14 3299 3208 317 360 95 16 chr12 6161624 6161866 -137624589 + L3b LINE CR1 1262 1522 -61 284 301 27 70 chr12 6162034 6162220 -137624235 - MIR SINE MIR -57 205 28 180 0 0 0 chr12 6163126 6163146 -137623309 + (T)n Simple_repeat Simple_repeat 1 20 0 259 224 0 0 chr12 6164113 6164162 -137622293 + L2 LINE L2 3251 3299 -14 1058 289 109 63 chr12 6165211 6165363 -137621092 - L2 LINE L2 -6 3307 3163 2358 94 0 0 chr12 6165363 6165672 -137620783 + AluSg SINE Alu 1 309 -1 1058 289 109 63 chr12 6165672 6165937 -137620518 - L2 LINE L2 -150 3163 2912 1838 137 14 7 chr12 6165937 6166229 -137620226 + AluSx SINE Alu 1 294 -18 1058 289 109 63 chr12 6166229 6166633 -137619822 - L2 LINE L2 -401 2912 2440 2167 285 123 9 chr12 6167220 6168420 -137618035 + L2 LINE L2 1950 3296 -17 318 26 0 0 chr12 6168561 6168600 -137617855 + (GA)n Simple_repeat Simple_repeat 2 40 0 203 257 29 0 chr12 6168607 6168677 -137617778 + GA-rich Low_complexity Low_complexity 2 73 0 373 267 125 8 chr12 6168827 6168947 -137617508 + MIR3 SINE MIR 40 173 -35 243 0 0 0 chr12 6169050 6169077 -137617378 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 707 279 59 28 chr12 6169105 6169350 -137617105 + MIR SINE MIR 3 251 -11 575 271 30 96 chr12 6169569 6169872 -137616583 + L1M4 LINE L1 2610 2892 -3254 2042 123 0 0 chr12 6169874 6170167 -137616288 + AluSx SINE Alu 1 293 -19 409 183 0 0 chr12 6170225 6170296 -137616159 + L2 LINE L2 3207 3277 -36 1273 311 75 23 chr12 6170382 6171467 -137614988 + L1M4 LINE L1 3047 4187 -1959 2167 110 3 0 chr12 6171467 6171776 -137614679 + AluY SINE Alu 1 310 -1 25719 72 6 0 chr12 6171788 6175073 -137611382 + L1P LINE L1 5 3307 -2839 228 208 21 0 chr12 6175073 6175121 -137611334 - Alu SINE Alu -221 82 34 194 310 80 18 chr12 6175227 6175340 -137611115 + L2 LINE L2 2133 2252 -1062 434 96 108 12 chr12 6175403 6175486 -137610969 - Alu SINE Alu -6 304 214 223 393 74 0 chr12 6176065 6176200 -137610255 + L2 LINE L2 2920 3064 -208 27 0 0 0 chr12 6176334 6176361 -137610094 + AT_rich Low_complexity Low_complexity 1 27 0 352 317 42 0 chr12 6176467 6176609 -137609846 + L1ME3A LINE L1 2539 2686 -3460 507 218 174 3 chr12 6176668 6176898 -137609557 + L1P4 LINE L1 5171 5431 -735 293 303 57 14 chr12 6176915 6177126 -137609329 + L1ME3A LINE L1 4942 5161 -985 * 787 305 79 16 chr12 6177113 6177608 -137608847 + L1ME3A LINE L1 5425 5950 -220 1822 129 6 39 chr12 6177850 6178161 -137608294 - AluJo SINE Alu -10 302 2 206 274 9 151 chr12 6178236 6178342 -137608113 - L3 LINE CR1 -59 1518 1428 292 276 71 39 chr12 6178841 6178968 -137607487 - L3 LINE CR1 -143 1434 1304 285 29 0 0 chr12 6179004 6179038 -137607417 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 186 29 43 chr12 6179594 6179664 -137606791 + GA-rich Low_complexity Low_complexity 5 73 0 1548 248 46 37 chr12 6180515 6181110 -137605345 + L2 LINE L2 2704 3300 -13 267 316 0 11 chr12 6181118 6181213 -137605242 - MIR SINE MIR -102 160 67 262 299 46 11 chr12 6181231 6181318 -137605137 + MIR SINE MIR 32 121 -87 1859 142 75 33 chr12 6181339 6181699 -137604756 + THE1C LTR MaLR 1 375 0 875 298 182 26 chr12 6182198 6182769 -137603686 + L2 LINE L2 2185 2844 -470 617 278 139 22 chr12 6182856 6183079 -137603376 + MIR SINE MIR 6 254 -8 626 288 77 77 chr12 6183090 6183389 -137603066 + L2 LINE L2 2970 3268 -4 560 289 66 53 chr12 6183503 6183731 -137602724 + MLT1J LTR MaLR 6 236 -275 2328 170 31 24 chr12 6185141 6185195 -137601260 + MSTB LTR MaLR 1 53 -373 2480 37 10 0 chr12 6185195 6185490 -137600965 + AluY SINE Alu 1 298 -13 2328 170 31 24 chr12 6185490 6185858 -137600597 + MSTB LTR MaLR 53 426 0 1406 226 133 38 chr12 6186542 6186985 -137599470 + MLT1D LTR MaLR 21 505 0 632 310 99 48 chr12 6186996 6187607 -137598848 - L2 LINE L2 -201 3071 2430 272 198 0 37 chr12 6188930 6189011 -137597444 + CT-rich Low_complexity Low_complexity 5 82 0 328 389 7 0 chr12 6190231 6190375 -137596080 + L1ME4a LINE L1 5779 5923 -198 236 294 56 16 chr12 6190382 6190508 -137595947 + L1ME4a LINE L1 5991 6121 0 736 277 121 51 chr12 6192987 6193417 -137593038 + LTR33A LTR ERVL 64 523 0 1227 241 60 52 chr12 6193492 6193610 -137592845 + LTR16C LTR ERVL 67 183 -308 180 97 0 0 chr12 6193610 6193641 -137592814 + (CA)n Simple_repeat Simple_repeat 2 32 0 1227 241 60 52 chr12 6193641 6193698 -137592757 + LTR16C LTR ERVL 183 238 -253 1545 227 13 37 chr12 6193698 6194072 -137592383 + MLT1A1 LTR MaLR 1 365 0 1227 241 60 52 chr12 6194072 6194314 -137592141 + LTR16C LTR ERVL 238 488 -3 1952 135 0 13 chr12 6195815 6196119 -137590336 - AluJo SINE Alu -8 304 5 2256 216 61 22 chr12 6196144 6196540 -137589915 - MER119 DNA MER1_type -5 578 152 2515 62 7 3 chr12 6196540 6196847 -137589608 + AluY SINE Alu 1 308 -3 2256 216 61 22 chr12 6196847 6197005 -137589450 - MER119 DNA MER1_type -431 152 2 186 43 0 0 chr12 6197265 6197288 -137589167 + (CAA)n Simple_repeat Simple_repeat 2 24 0 278 175 12 0 chr12 6199413 6199493 -137586962 + (CA)n Simple_repeat Simple_repeat 1 81 0 848 266 192 16 chr12 6199772 6200204 -137586251 + LTR33A LTR ERVL 8 515 -8 516 221 207 9 chr12 6200803 6201016 -137585439 + MIR SINE MIR 8 262 0 2412 146 53 27 chr12 6201380 6201791 -137584664 + MSTA LTR MaLR 1 422 -6 386 178 0 99 chr12 6201849 6201950 -137584505 + L1MB8 LINE L1 4018 4108 -2038 1340 83 0 0 chr12 6201951 6202119 -137584336 - AluY SINE Alu -10 301 134 2499 73 0 0 chr12 6202120 6202421 -137584034 - AluY SINE Alu -10 301 1 5089 180 50 39 chr12 6202421 6204412 -137582043 + L1MB8 LINE L1 4099 6110 -68 311 151 21 54 chr12 6204492 6204585 -137581870 + L1MB8 LINE L1 6089 6178 0 319 309 9 9 chr12 6204623 6204733 -137581722 + MIR SINE MIR 16 125 -83 603 255 121 35 chr12 6206266 6206497 -137579958 + MIR SINE MIR 4 254 -8 340 267 84 0 chr12 6208433 6208564 -137577891 - MER103 DNA DNA -2 164 23 2353 106 0 6 chr12 6208954 6209265 -137577190 - AluSx SINE Alu -3 309 1 558 319 143 21 chr12 6209726 6210161 -137576294 - L2 LINE L2 -9 3304 2817 306 0 0 0 chr12 6213912 6213946 -137572509 + (CA)n Simple_repeat Simple_repeat 2 35 0 246 400 7 0 chr12 6214137 6214287 -137572168 + L2 LINE L2 2554 2704 -610 221 305 93 68 chr12 6214760 6215039 -137571416 - L2 LINE L2 -23 3249 2964 514 237 59 7 chr12 6215996 6216148 -137570307 - MIR SINE MIR -19 243 84 270 56 0 0 chr12 6217788 6217824 -137568631 + (TG)n Simple_repeat Simple_repeat 2 37 0 233 292 45 0 chr12 6218023 6218112 -137568343 + MIR SINE MIR 26 118 -90 608 220 31 31 chr12 6221372 6221531 -137564924 + L1MD2 LINE L1 6199 6357 -2 412 232 33 132 chr12 6221907 6222179 -137564276 + MER112 DNA MER1_type 8 252 -8 267 322 0 0 chr12 6222258 6222348 -137564107 + (TG)n Simple_repeat Simple_repeat 1 90 0 195 239 0 0 chr12 6222373 6222440 -137564015 + (TG)n Simple_repeat Simple_repeat 1 67 0 329 250 29 44 chr12 6222787 6222923 -137563532 + MIR SINE MIR 20 153 -109 201 178 22 22 chr12 6223141 6223186 -137563269 + CT-rich Low_complexity Low_complexity 2 46 0 186 71 0 0 chr12 6223186 6223214 -137563241 + (A)n Simple_repeat Simple_repeat 1 28 0 327 215 0 0 chr12 6223870 6223935 -137562520 + MLT1K LTR MaLR 511 575 -13 279 283 243 0 chr12 6224066 6224218 -137562237 - MIR SINE MIR -6 256 68 1789 150 7 29 chr12 6224234 6224540 -137561915 - AluJo SINE Alu -3 309 11 391 182 34 0 chr12 6225762 6225850 -137560605 + L1ME4a LINE L1 5965 6055 -66 * 5370 164 29 41 chr12 6225845 6227280 -137559175 - L1MA10 LINE L1 -2 6220 4788 294 167 0 6 chr12 6227280 6227338 -137559117 - L1MA10 LINE L1 -1579 4455 4400 1136 89 0 13 chr12 6227341 6227498 -137558957 - MER4C LTR ERV1 0 465 311 2481 77 28 25 chr12 6227498 6227851 -137558604 - MER4C LTR ERV1 -111 354 1 5863 229 61 48 chr12 6227851 6229668 -137556787 - L1MA10 LINE L1 -1636 4398 2606 3301 45 0 0 chr12 6229668 6230120 -137556335 - L1PA5 LINE L1 0 6154 5756 5863 229 61 48 chr12 6230120 6231553 -137554902 - L1MA10 LINE L1 -3428 2606 3 3402 250 116 52 chr12 6231913 6233294 -137553161 + L1ME3A LINE L1 18 1486 -4937 1223 269 35 59 chr12 6233295 6233736 -137552719 + L1ME3A LINE L1 1875 2292 -4830 2252 143 0 15 chr12 6233736 6234078 -137552377 + MER1B DNA MER1_type 1 337 0 1223 269 35 59 chr12 6234078 6234378 -137552077 + L1ME3A LINE L1 2292 2598 -4524 409 262 6 38 chr12 6234758 6234941 -137551514 + MER31-int LTR ERV1 973 1149 -5182 180 0 0 0 chr12 6235374 6235394 -137551061 + (A)n Simple_repeat Simple_repeat 1 20 0 337 196 14 98 chr12 6235571 6235714 -137550741 + LTR57-int LTR ERVL 622 752 -4591 * 892 209 42 58 chr12 6235656 6236196 -137550259 + MER31-int LTR ERV1 834 2028 -2843 * 899 232 21 64 chr12 6236089 6236369 -137550086 + LTR57-int LTR ERVL 1225 1492 -3851 664 202 65 85 chr12 6236455 6236703 -137549752 + MER31-int LTR ERV1 1737 1979 -2957 * 2077 195 68 102 chr12 6236702 6237747 -137548708 + MER31-int LTR ERV1 3455 4463 -1868 392 214 22 0 chr12 6237747 6237836 -137548619 + MER34B LTR ERV1 470 560 -5 1401 232 129 7 chr12 6237845 6238293 -137548162 + L1ME3A LINE L1 3612 4114 -2827 298 171 53 40 chr12 6238497 6238573 -137547882 - MIR SINE MIR -122 140 64 653 266 65 12 chr12 6238625 6238873 -137547582 - MIR SINE MIR 0 262 2 238 219 0 16 chr12 6239405 6239469 -137546986 + GA-rich Low_complexity Low_complexity 2 64 0 638 245 75 75 chr12 6239498 6239751 -137546704 - MER102a DNA MER1_type -4 326 74 233 314 89 32 chr12 6239818 6239942 -137546513 + MIR SINE MIR 4 134 -128 3078 261 60 10 chr12 6240037 6240999 -137545456 + L1ME3A LINE L1 5941 6948 -17 254 298 32 11 chr12 6241826 6241920 -137544535 - MIR SINE MIR -10 252 157 406 272 48 34 chr12 6244147 6244294 -137542161 - MER91A DNA MER1_type -45 151 3 401 286 48 48 chr12 6244306 6244453 -137542002 - MIR SINE MIR -111 151 5 1316 267 170 17 chr12 6244624 6245514 -137540941 + L2 LINE L2 2272 3311 -2 424 309 44 19 chr12 6245517 6245671 -137540784 - MIR SINE MIR -75 133 25 1950 120 45 0 chr12 6245813 6246105 -137540350 + AluSq SINE Alu 1 305 -8 891 241 191 26 chr12 6247237 6247577 -137538878 + LTR33 LTR ERVL 31 426 -95 298 319 44 67 chr12 6247656 6247791 -137538664 - MIR3 SINE MIR -32 176 45 252 237 105 13 chr12 6247798 6247874 -137538581 + MIR SINE MIR 179 261 -1 544 224 26 9 chr12 6248070 6248186 -137538269 - MER91A DNA MER1_type -78 118 1 1413 178 10 40 chr12 6248488 6248791 -137537664 + AluJb SINE Alu 1 294 -18 478 291 166 0 chr12 6249272 6249471 -137536984 - MIR SINE MIR -10 252 21 2204 56 0 0 chr12 6249777 6250043 -137536412 - AluY SINE Alu -12 299 34 189 344 76 8 chr12 6250546 6250677 -137535778 - MIR3 SINE MIR -48 160 21 307 262 97 10 chr12 6252268 6252371 -137534084 + L3b LINE CR1 1268 1379 -204 571 256 70 92 chr12 6252435 6252662 -137533793 - MIR SINE MIR -7 255 34 192 125 0 0 chr12 6252748 6252780 -137533675 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 577 251 29 0 chr12 6252817 6252992 -137533463 + MER104 DNA MER2_type 1 180 0 202 347 40 0 chr12 6253200 6253275 -137533180 + L2 LINE L2 3182 3259 -54 202 239 56 84 chr12 6253368 6253439 -137533016 + L3b LINE CR1 1506 1574 -9 2353 211 42 72 chr12 6253823 6254633 -137531822 + L1MC4 LINE L1 7221 8006 -36 2567 233 46 10 chr12 6256083 6256810 -137529645 - L1MEc LINE L1 -3312 2903 2184 341 269 92 8 chr12 6256835 6256965 -137529490 - L1MEc LINE L1 -6216 180 40 181 311 33 16 chr12 6256972 6257033 -137529422 + MER5A DNA MER1_type 128 189 0 870 266 125 37 chr12 6257266 6257675 -137528780 - L3 LINE CR1 -461 1116 672 275 316 0 0 chr12 6258012 6258091 -137528364 + MIR SINE MIR 58 136 -72 436 338 91 60 chr12 6258329 6258779 -137527676 + L2 LINE L2 2807 3270 -2 330 98 0 0 chr12 6259972 6260023 -137526432 + (CA)n Simple_repeat Simple_repeat 2 52 0 276 231 64 26 chr12 6260544 6260622 -137525833 - MIR3 SINE MIR -7 201 121 210 362 0 0 chr12 6260821 6260879 -137525576 + MIR3 SINE MIR 135 192 -16 341 306 244 10 chr12 6261057 6261250 -137525205 + MIR SINE MIR 3 240 -22 223 341 24 0 chr12 6261611 6261696 -137524759 + L2 LINE L2 2737 2823 -491 696 248 105 19 chr12 6261773 6261983 -137524472 + MIR SINE MIR 35 262 0 317 254 18 5 chr12 6262305 6262398 -137524057 + MLT1I LTR MaLR 72 203 -264 287 210 0 0 chr12 6262679 6262741 -137523714 - MER94 DNA DNA -60 74 13 395 253 0 0 chr12 6262760 6262835 -137523620 + L2 LINE L2 3179 3253 -19 2251 97 7 0 chr12 6262865 6263174 -137523281 - AluSx SINE Alu -1 311 1 500 232 101 7 chr12 6265932 6266070 -137520385 + MIR SINE MIR 32 182 -80 36 82 0 0 chr12 6266248 6266333 -137520122 + AT_rich Low_complexity Low_complexity 1 85 0 367 285 62 41 chr12 6266369 6266542 -137519913 - MIR SINE MIR -61 147 20 709 306 61 66 chr12 6267277 6267669 -137518786 + L3 LINE CR1 1123 1512 -65 182 280 67 73 chr12 6267850 6268000 -137518455 + MIR SINE MIR 4 152 -110 199 250 0 125 chr12 6268842 6268922 -137517533 + L2 LINE L2 3001 3070 -202 473 204 2 18 chr12 6270441 6270894 -137515561 + (CA)n Simple_repeat Simple_repeat 1 445 0 316 292 26 39 chr12 6272979 6273133 -137513322 - MIR3 SINE MIR -35 173 22 3035 247 123 25 chr12 6274184 6275508 -137510947 - L2 LINE L2 0 3313 1854 256 283 38 38 chr12 6277495 6277601 -137508854 + MIR SINE MIR 42 147 -61 289 295 66 25 chr12 6279940 6280062 -137506393 + MIR SINE MIR 20 146 -116 24 0 0 0 chr12 6281104 6281128 -137505327 + AT_rich Low_complexity Low_complexity 1 24 0 816 188 96 14 chr12 6282175 6282393 -137504062 + Charlie1 DNA MER1_type 1 236 -2525 585 220 38 8 chr12 6282380 6282512 -137503943 + Charlie1 DNA MER1_type 2621 2756 -5 * 559 226 8 0 chr12 6286371 6286618 -137499837 + G-rich Low_complexity Low_complexity 1 249 0 705 143 5 53 chr12 6286622 6286811 -137499644 + GA-rich Low_complexity Low_complexity 1 180 0 299 68 0 23 chr12 6286814 6286858 -137499597 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 219 246 0 0 chr12 6286864 6286921 -137499534 + A-rich Low_complexity Low_complexity 1 57 0 * 524 153 16 44 chr12 6286919 6287102 -137499353 + GA-rich Low_complexity Low_complexity 3 180 0 774 153 23 11 chr12 6287123 6287299 -137499156 + GA-rich Low_complexity Low_complexity 3 180 0 401 152 18 36 chr12 6287311 6287423 -137499032 + GA-rich Low_complexity Low_complexity 3 112 0 431 329 7 14 chr12 6287689 6287832 -137498623 - MER5A DNA MER1_type -13 176 35 213 292 34 11 chr12 6288014 6288103 -137498352 + MIR SINE MIR 48 138 -70 509 291 37 32 chr12 6288122 6288311 -137498144 - MIR3 SINE MIR 0 208 19 513 276 65 35 chr12 6288470 6288669 -137497786 + LTR33 LTR ERVL 314 518 -3 1040 255 77 20 chr12 6288703 6289056 -137497399 + L2 LINE L2 2941 3313 0 235 314 116 0 chr12 6289142 6289228 -137497227 + MIR SINE MIR 21 116 -92 313 250 170 0 chr12 6290896 6290996 -137495459 + MIR SINE MIR 34 150 -112 439 348 25 6 chr12 6291131 6291292 -137495163 + L2 LINE L2 3102 3265 -7 460 237 90 0 chr12 6291526 6291652 -137494803 - MIR SINE MIR -62 146 58 250 319 115 13 chr12 6292003 6292160 -137494295 - L2 LINE L2 -926 2388 2216 2702 70 123 5 chr12 6292403 6292763 -137493692 + MLT2A1 LTR ERVL 1 414 -30 478 53 13 13 chr12 6292763 6292838 -137493617 + (TA)n Simple_repeat Simple_repeat 2 76 0 2702 70 123 5 chr12 6292838 6292874 -137493581 + MLT2A1 LTR ERVL 414 444 0 4716 49 9 0 chr12 6292874 6293449 -137493006 + HERVL-A1 LTR ERVL 1 580 -5074 * 29763 63 9 5 chr12 6293441 6297082 -137489373 + HERVL-A1 LTR ERVL 765 4420 -1234 2163 80 27 23 chr12 6297082 6297382 -137489073 - THE1A LTR MaLR 0 355 55 1171 220 48 10 chr12 6347409 6347718 -137438737 + L1MC4a LINE L1 5639 5959 -1849 1776 166 31 3 chr12 6347767 6348057 -137438398 + AluJb SINE Alu 1 298 -14 2341 62 0 0 chr12 6348060 6348336 -137438119 + AluY SINE Alu 1 276 -35 4042 174 16 3 chr12 6348388 6349062 -137437393 - L1MB1 LINE L1 -6 6162 5475 342 0 0 0 chr12 6349062 6349100 -137437355 + (TG)n Simple_repeat Simple_repeat 2 39 0 4042 174 16 3 chr12 6349100 6349178 -137437277 - L1MB1 LINE L1 -693 5475 5400 306 265 191 37 chr12 6349876 6350065 -137436390 + MIR SINE MIR 31 248 -14 2100 107 0 0 chr12 6350216 6350487 -137435968 + AluSg SINE Alu 37 307 -3 402 290 66 48 chr12 6352145 6352257 -137434198 + L1ME2 LINE L1 5709 5818 -356 1919 167 0 0 chr12 6352257 6352562 -137433893 + AluJb SINE Alu 1 305 -7 402 290 66 48 chr12 6352562 6352673 -137433782 + L1ME2 LINE L1 5818 5940 -234 1195 191 36 13 chr12 6352682 6352985 -137433470 + L1MC3 LINE L1 7473 7782 -3 616 173 48 48 chr12 6353537 6353705 -137432750 - MER53 DNA DNA -19 170 3 489 283 40 80 chr12 6353742 6353821 -137432634 - MIR SINE MIR -44 218 137 2165 143 0 3 chr12 6353821 6354129 -137432326 - AluSx SINE Alu -3 309 3 489 283 40 80 chr12 6354129 6354275 -137432180 - MIR SINE MIR -125 137 2 238 266 31 16 chr12 6354618 6354682 -137431773 + L3b LINE CR1 1503 1567 -16 2326 100 0 3 chr12 6354701 6355000 -137431455 - AluSg SINE Alu -12 298 1 315 260 133 87 chr12 6355072 6355222 -137431233 - MIR SINE MIR -1 261 105 * 1011 271 89 39 chr12 6355221 6355682 -137430773 - L2 LINE L2 0 3313 2830 2518 68 0 0 chr12 6355961 6356257 -137430198 - AluY SINE Alu -14 297 2 654 152 0 0 chr12 6356291 6356416 -137430039 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 2293 91 0 31 chr12 6356841 6357160 -137429295 + AluY SINE Alu 1 309 -2 207 329 7 20 chr12 6357852 6358004 -137428451 + (CA)n Simple_repeat Simple_repeat 1 150 0 1143 121 0 0 chr12 6359266 6359566 -137426889 + (CA)n Simple_repeat Simple_repeat 1 300 0 478 252 208 6 chr12 6360136 6360295 -137426160 + MIR SINE MIR 37 227 -35 2325 129 151 0 chr12 6360810 6361214 -137425241 + MER4C LTR ERV1 1 465 0 915 322 140 7 chr12 6362104 6362859 -137423596 + L2 LINE L2 2120 2975 -339 381 282 0 28 chr12 6364734 6364915 -137421540 + CT-rich Low_complexity Low_complexity 3 178 0 301 250 0 62 chr12 6364936 6365080 -137421375 + CT-rich Low_complexity Low_complexity 3 137 0 261 297 17 51 chr12 6365304 6365422 -137421033 - L2 LINE L2 -453 2861 2748 287 273 63 98 chr12 6365723 6366133 -137420322 + L2 LINE L2 2466 2861 -453 326 285 0 42 chr12 6366357 6366649 -137419806 + GA-rich Low_complexity Low_complexity 1 279 0 312 307 0 28 chr12 6366692 6366871 -137419584 + GA-rich Low_complexity Low_complexity 4 177 0 339 304 0 28 chr12 6366892 6367073 -137419382 + GA-rich Low_complexity Low_complexity 3 178 0 276 235 0 0 chr12 6367862 6367930 -137418525 + (TGGA)n Simple_repeat Simple_repeat 2 69 0 204 254 18 91 chr12 6368121 6368231 -137418224 + L2 LINE L2 2901 3002 -270 966 185 16 22 chr12 6368448 6368632 -137417823 - MIR SINE MIR 0 262 80 309 306 0 0 chr12 6369575 6369647 -137416808 + L2 LINE L2 3168 3239 -33 550 214 29 0 chr12 6370117 6370220 -137416235 - MER5B DNA MER1_type -1 177 72 181 200 29 0 chr12 6370216 6370251 -137416204 + MER5B DNA MER1_type 142 177 -1 * 1823 175 26 48 chr12 6370345 6370676 -137415779 - L1M LINE L1 -743 5403 5120 1408 212 38 46 chr12 6370676 6371044 -137415411 + MLT1A1 LTR MaLR 1 365 0 1823 175 26 48 chr12 6371044 6371246 -137415209 - L1M LINE L1 -1026 5120 4915 21 57 0 0 chr12 6371261 6371296 -137415159 + AT_rich Low_complexity Low_complexity 1 35 0 2633 172 13 2 chr12 6371342 6371909 -137414546 - L1M2 LINE L1 -559 5753 5174 380 364 59 62 chr12 6372184 6372827 -137413628 - L1MEc LINE L1 -5700 696 56 350 170 0 0 chr12 6372831 6372898 -137413557 - Alu SINE Alu -250 53 1 2362 110 0 13 chr12 6372914 6373222 -137413233 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr12 6373285 6373310 -137413145 + AT_rich Low_complexity Low_complexity 1 25 0 2352 89 17 0 chr12 6373312 6373614 -137412841 + AluSc SINE Alu 1 307 -2 201 298 106 21 chr12 6373758 6373852 -137412603 - L2 LINE L2 -12 3260 3159 799 208 48 34 chr12 6374069 6374276 -137412179 - MLT1J2 LTR MaLR -240 210 1 375 23 0 0 chr12 6374441 6374485 -137411970 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 3890 179 34 1 chr12 6374934 6375665 -137410790 + L1MB7 LINE L1 5427 6181 -3 995 248 46 94 chr12 6375665 6376432 -137410023 + L1MDa LINE L1 1310 2039 -4501 21 0 0 0 chr12 6376700 6376721 -137409734 + AT_rich Low_complexity Low_complexity 1 21 0 517 269 82 39 chr12 6376957 6377165 -137409290 + L2 LINE L2 2842 3058 -255 5025 101 22 14 chr12 6377186 6377637 -137408818 + L1PB2 LINE L1 5337 5800 -351 363 73 0 0 chr12 6377637 6377692 -137408763 + (TG)n Simple_repeat Simple_repeat 2 56 0 5025 101 22 14 chr12 6377692 6378041 -137408414 + L1PB2 LINE L1 5800 6144 -7 183 42 0 0 chr12 6379347 6379371 -137407084 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr12 6379609 6379633 -137406822 + GC_rich Low_complexity Low_complexity 1 24 0 208 272 9 35 chr12 6379675 6379789 -137406666 + (CCCCG)n Simple_repeat Simple_repeat 5 115 0 540 309 99 4 chr12 6380719 6380952 -137405503 - MIR SINE MIR -6 256 2 527 224 40 59 chr12 6381917 6382069 -137404386 + MIR3 SINE MIR 36 184 -24 349 300 114 0 chr12 6382581 6382721 -137403734 - MIR SINE MIR -75 187 32 2450 84 0 0 chr12 6387324 6387620 -137398835 + AluSc SINE Alu 1 296 -13 944 302 102 26 chr12 6388206 6388666 -137397789 + L2 LINE L2 2255 2749 -565 761 366 36 5 chr12 6388694 6389115 -137397340 + L1ME LINE L1 32 465 -5605 631 293 37 73 chr12 6389332 6389597 -137396858 + L1ME LINE L1 525 706 -5364 3750 42 0 0 chr12 6389597 6390047 -137396408 - L1PA3 LINE L1 -3 6152 5703 631 293 37 73 chr12 6390047 6390381 -137396074 + L1ME LINE L1 706 1051 -5019 2779 123 136 6 chr12 6390386 6390892 -137395563 + Tigger3b DNA MER2_type 1 572 -659 924 138 12 31 chr12 6390893 6391053 -137395402 + FRAM SINE Alu 20 176 0 * 4032 118 39 8 chr12 6391038 6391685 -137394770 + Tigger3b DNA MER2_type 565 1231 0 1382 259 150 32 chr12 6391685 6392785 -137393670 + L1MC/D LINE L1 1247 2673 -3934 1770 181 0 7 chr12 6392792 6393091 -137393364 + AluJb SINE Alu 11 307 -5 3741 245 65 46 chr12 6393277 6393311 -137393144 + L1MC/D LINE L1 2641 2673 -3753 1885 161 30 3 chr12 6393311 6393610 -137392845 + AluJo SINE Alu 1 307 -5 3741 245 65 46 chr12 6393610 6394427 -137392028 + L1MC/D LINE L1 2673 3473 -2953 187 53 26 26 chr12 6394427 6394465 -137391990 + (TATAA)n Simple_repeat Simple_repeat 2 39 0 3741 245 65 46 chr12 6394465 6395227 -137391228 + L1MC/D LINE L1 3473 4286 -2140 3668 116 6 4 chr12 6395229 6395739 -137390716 + MER1A DNA MER1_type 19 529 0 4048 203 79 54 chr12 6395745 6396200 -137390255 + L1MC/D LINE L1 4296 4738 -1704 1209 206 66 71 chr12 6396200 6396565 -137389890 + MLT1A1 LTR MaLR 1 363 -2 4048 203 79 54 chr12 6396565 6396913 -137389542 + L1MC/D LINE L1 4738 5076 -1366 2376 86 0 26 chr12 6396913 6397226 -137389229 - AluSc SINE Alu -4 305 1 4048 203 79 54 chr12 6397226 6397915 -137388540 + L1MC/D LINE L1 5076 5821 -621 518 158 0 11 chr12 6398041 6398136 -137388319 - AluJ/FRAM SINE Alu 0 312 219 2316 70 0 33 chr12 6398303 6398597 -137387858 + AluY SINE Alu 1 285 -22 666 37 0 0 chr12 6398597 6398678 -137387777 + (CATA)n Simple_repeat Simple_repeat 2 82 0 215 61 30 0 chr12 6400647 6400680 -137385775 + (CA)n Simple_repeat Simple_repeat 2 35 0 302 262 12 0 chr12 6401401 6401485 -137384970 + L1MC/D LINE L1 6003 6087 -2001 211 214 0 0 chr12 6401486 6401528 -137384927 + L2 LINE L2 3266 3307 -6 1889 125 4 0 chr12 6402891 6403147 -137383308 + AluSx SINE Alu 1 257 -55 210 71 0 0 chr12 6403189 6403217 -137383238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 816 71 0 0 chr12 6410309 6410407 -137376048 + AluY SINE Alu 198 295 -16 244 343 29 19 chr12 6410675 6410780 -137375675 - L2 LINE L2 -5 3308 3203 245 317 8 42 chr12 6411343 6411463 -137374992 - L3 LINE CR1 -246 1331 1216 1428 272 67 58 chr12 6411515 6411966 -137374489 + L1MC5 LINE L1 5548 5993 -1992 1603 195 3 3 chr12 6411966 6412248 -137374207 + AluJb SINE Alu 1 282 -30 223 71 48 0 chr12 6412252 6412294 -137374161 + (TA)n Simple_repeat Simple_repeat 1 44 0 1428 272 67 58 chr12 6412294 6412645 -137373810 + L1MC5 LINE L1 5995 6341 -1644 1988 120 4 7 chr12 6412645 6412921 -137373534 - AluSx SINE Alu -16 296 22 1428 272 67 58 chr12 6412921 6413757 -137372698 + L1MC5 LINE L1 6341 7232 -753 2124 108 28 0 chr12 6413848 6414135 -137372320 + AluSc SINE Alu 1 295 -14 2484 73 0 19 chr12 6414138 6414455 -137372000 + AluY SINE Alu 1 311 0 680 135 0 8 chr12 6414472 6414598 -137371857 + (GGGA)n Simple_repeat Simple_repeat 2 126 0 529 286 38 19 chr12 6414681 6414891 -137371564 + L1MC5 LINE L1 7313 7526 -435 220 234 0 117 chr12 6415423 6415500 -137370955 + L2 LINE L2 3205 3272 0 189 107 0 0 chr12 6415500 6415528 -137370927 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 747 174 0 0 chr12 6415573 6415688 -137370767 + FLAM_A SINE Alu 1 115 -18 274 304 52 37 chr12 6415737 6415872 -137370583 + L2 LINE L2 3177 3313 0 246 156 0 0 chr12 6416001 6416046 -137370409 + (TGGA)n Simple_repeat Simple_repeat 1 45 0 746 95 17 34 chr12 6417727 6417906 -137368549 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 756 87 43 36 chr12 6417947 6418402 -137368053 + (TAGA)n Simple_repeat Simple_repeat 1 458 0 211 321 175 7 chr12 6418452 6418589 -137367866 + MIR SINE MIR 88 247 -15 264 277 0 0 chr12 6418591 6418656 -137367799 + MIR3 SINE MIR 133 197 -11 402 348 153 22 chr12 6418782 6419227 -137367228 - L3 LINE CR1 -835 742 240 192 286 66 11 chr12 6420472 6420563 -137365892 - MIR3 SINE MIR -32 176 81 316 182 27 0 chr12 6420612 6420690 -137365765 + MIR SINE MIR 104 183 -79 374 249 145 42 chr12 6421043 6421236 -137365219 - MIR SINE MIR -1 261 49 2156 136 3 3 chr12 6421273 6421581 -137364874 - AluSx SINE Alu -4 308 1 521 230 140 11 chr12 6421640 6421818 -137364637 - MIR SINE MIR -30 232 32 1531 229 46 15 chr12 6421959 6422352 -137364103 + L1ME1 LINE L1 5757 6161 -5 24 0 0 0 chr12 6423006 6423030 -137363425 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr12 6425221 6425246 -137361209 + (A)n Simple_repeat Simple_repeat 1 25 0 245 273 66 58 chr12 6425311 6425432 -137361023 + MIR SINE MIR 11 132 -130 417 39 0 0 chr12 6425504 6425555 -137360900 + (CA)n Simple_repeat Simple_repeat 1 51 0 499 269 90 0 chr12 6425555 6425700 -137360755 - MER103 DNA DNA -1 165 8 186 171 0 0 chr12 6425875 6425916 -137360539 + (TAA)n Simple_repeat Simple_repeat 3 43 0 1110 199 75 72 chr12 6426453 6426799 -137359656 + MLT1J LTR MaLR 4 350 -161 366 235 121 20 chr12 6427285 6427434 -137359021 - MIR3 SINE MIR -15 193 30 255 218 0 0 chr12 6427951 6428006 -137358449 + L1MC4 LINE L1 6648 6702 -1340 * 277 189 14 27 chr12 6427976 6428050 -137358405 - L1MC4 LINE L1 -1340 6702 6630 229 237 51 0 chr12 6428093 6428152 -137358303 - MIR SINE MIR -109 153 92 1437 64 16 0 chr12 6429318 6429505 -137356950 - MER30B DNA MER1_type 0 190 1 312 253 0 33 chr12 6430663 6430754 -137355701 - MIR3 SINE MIR -23 185 98 198 0 0 0 chr12 6431085 6431107 -137355348 + (A)n Simple_repeat Simple_repeat 1 22 0 363 325 52 19 chr12 6431787 6431999 -137354456 + MIR SINE MIR 30 248 -14 1984 68 0 0 chr12 6432551 6432785 -137353670 + AluY SINE Alu 1 234 -77 198 0 0 0 chr12 6432800 6432822 -137353633 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr12 6432822 6432850 -137353605 + (TA)n Simple_repeat Simple_repeat 2 29 0 2207 105 16 7 chr12 6433033 6433338 -137353117 - AluSg SINE Alu -2 308 1 357 24 0 0 chr12 6433779 6433821 -137352634 + (CA)n Simple_repeat Simple_repeat 2 43 0 970 300 98 42 chr12 6434252 6434845 -137351610 + HAL1b LINE L1 5 662 -686 2485 45 7 16 chr12 6434845 6435153 -137351302 + AluY SINE Alu 3 307 -4 970 300 98 42 chr12 6435153 6435420 -137351035 + HAL1b LINE L1 662 913 -435 23 68 0 0 chr12 6435544 6435588 -137350867 + AT_rich Low_complexity Low_complexity 1 44 0 1035 301 119 54 chr12 6435610 6436714 -137349741 + L1MC4a LINE L1 2139 3313 -2833 283 188 16 0 chr12 6436811 6436875 -137349580 + L1P LINE L1 3343 3407 -2739 413 295 14 58 chr12 6437003 6437210 -137349245 + L1MC4a LINE L1 3507 3704 -2442 607 110 0 0 chr12 6437226 6437308 -137349147 + L1M4c LINE L1 29 110 -6274 * 1046 159 10 0 chr12 6437307 6437502 -137348953 + L1M4c LINE L1 860 1056 -5328 * 2125 106 14 35 chr12 6437490 6437857 -137348598 + L1M4c LINE L1 1924 2282 -4102 1802 157 12 26 chr12 6437859 6438119 -137348336 + L1MB3 LINE L1 5842 6097 -86 2088 56 0 8 chr12 6438119 6438370 -137348085 - AluY SINE Alu 0 311 63 1802 157 12 26 chr12 6438370 6438453 -137348002 + L1MB3 LINE L1 6097 6180 -3 725 253 125 112 chr12 6438464 6438763 -137347692 + L1MC4a LINE L1 3692 3986 -2160 240 111 0 0 chr12 6438763 6438799 -137347656 + (TG)n Simple_repeat Simple_repeat 1 36 0 725 253 125 112 chr12 6438799 6439639 -137346816 + L1MC4a LINE L1 3986 4846 -1300 7773 220 38 33 chr12 6439801 6440819 -137345636 + L1MB1 LINE L1 2596 3608 -3957 2115 103 0 14 chr12 6440819 6441100 -137345355 + AluSc SINE Alu 1 277 -32 191 35 0 35 chr12 6441100 6441129 -137345326 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 7773 220 38 33 chr12 6441129 6443221 -137343234 + L1MB1 LINE L1 3607 5784 -1781 4986 160 19 17 chr12 6443203 6443752 -137342703 + L1MB1 LINE L1 6350 6896 -691 * 360 0 0 0 chr12 6443752 6443792 -137342663 + (CA)n Simple_repeat Simple_repeat 2 41 0 4986 160 19 17 chr12 6443792 6444466 -137341989 + L1MB1 LINE L1 6896 7581 -6 1684 220 58 76 chr12 6444471 6445061 -137341394 + L1MC4a LINE L1 5310 5888 -1920 180 0 0 0 chr12 6447010 6447030 -137339425 + (TG)n Simple_repeat Simple_repeat 2 21 0 2605 57 0 0 chr12 6447031 6447327 -137339128 - AluY SINE Alu -15 296 1 1833 270 144 11 chr12 6448110 6449154 -137337301 - L2 LINE L2 -5 3308 2128 242 254 34 0 chr12 6449164 6449223 -137337232 - MIR SINE MIR -63 145 85 240 376 120 0 chr12 6449487 6449612 -137336843 - L2 LINE L2 0 3272 3133 186 43 0 0 chr12 6449617 6449640 -137336815 + (CAATA)n Simple_repeat Simple_repeat 2 24 0 447 253 96 7 chr12 6450683 6450829 -137335626 - MIR3 SINE MIR -23 185 27 487 239 32 134 chr12 6451950 6452197 -137334258 - MIR SINE MIR -14 248 27 202 256 110 12 chr12 6452527 6452609 -137333846 - MIR SINE MIR -73 135 46 182 224 0 20 chr12 6452973 6453022 -137333433 - L2 LINE L2 -467 2847 2800 259 254 16 0 chr12 6454733 6454796 -137331659 - L2 LINE L2 0 3272 3209 219 148 0 49 chr12 6456051 6456112 -137330343 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 481 200 9 9 chr12 6456671 6456781 -137329674 - MER3 DNA MER1_type 0 209 100 918 150 0 0 chr12 6457415 6457548 -137328907 - FLAM_C SINE Alu -10 133 1 2317 117 3 0 chr12 6459068 6459376 -137327079 + AluSx SINE Alu 1 309 -3 228 273 162 0 chr12 6460578 6460677 -137325778 - MIR SINE MIR -117 145 31 1480 156 19 0 chr12 6460982 6461239 -137325216 + L1MA5 LINE L1 6037 6298 -2 270 298 163 51 chr12 6461260 6461438 -137325017 + L3 LINE CR1 1190 1387 -190 * 467 260 72 20 chr12 6461432 6461744 -137324711 + L2 LINE L2 2758 3082 -231 1441 183 83 40 chr12 6461792 6462164 -137324291 + MLT1D LTR MaLR 118 505 0 339 25 0 0 chr12 6462170 6462210 -137324245 + (CA)n Simple_repeat Simple_repeat 2 41 0 391 200 62 0 chr12 6462226 6462306 -137324149 + L2 LINE L2 3229 3313 0 6421 70 10 6 chr12 6462710 6463604 -137322851 + L1P LINE L1 1611 2508 -3638 429 308 77 18 chr12 6464843 6465012 -137321443 + MER5A DNA MER1_type 10 188 -1 2106 128 0 10 chr12 6465072 6465368 -137321087 + AluSx SINE Alu 1 293 -19 947 61 0 0 chr12 6466567 6466682 -137319773 + AluSc SINE Alu 194 308 -1 2566 59 3 0 chr12 6466684 6466991 -137319464 + AluY SINE Alu 1 308 -3 236 271 102 0 chr12 6466991 6467050 -137319405 + MIR SINE MIR 51 115 -147 615 231 0 0 chr12 6467050 6467357 -137319098 + (CA)n Simple_repeat Simple_repeat 1 307 0 293 182 18 0 chr12 6467361 6467416 -137319039 + (CATA)n Simple_repeat Simple_repeat 1 56 0 529 275 48 16 chr12 6468561 6468750 -137317705 + MER91A DNA MER1_type 1 195 -1 1656 100 6 108 chr12 6470117 6470505 -137315950 + Tigger4(Zombi) DNA MER2_type 1 2731 0 238 190 66 66 chr12 6470547 6470630 -137315825 - MIR SINE MIR -60 148 69 724 250 185 29 chr12 6471087 6471607 -137314848 + L1ME4a LINE L1 5519 6119 -2 236 267 124 19 chr12 6474299 6474460 -137311995 + MIR3 SINE MIR 24 201 -7 263 253 58 35 chr12 6474593 6474680 -137311775 - MIR3 SINE MIR -15 193 105 348 274 66 23 chr12 6474867 6475002 -137311453 - MIR SINE MIR -67 141 3 485 188 80 212 chr12 6475279 6475474 -137310981 + MER5C DNA MER1_type 1 220 -104 2251 114 0 16 chr12 6475474 6475782 -137310673 + AluSx SINE Alu 1 303 -9 2488 55 3 0 chr12 6475782 6476073 -137310382 - AluY SINE Alu -19 292 1 485 188 80 212 chr12 6476073 6476201 -137310254 + MER5C DNA MER1_type 218 282 -42 251 300 175 8 chr12 6478060 6478180 -137308275 - MIR3 SINE MIR -8 200 61 301 288 55 113 chr12 6479242 6479516 -137306939 + L2 LINE L2 3042 3299 -14 2335 87 14 3 chr12 6480267 6480556 -137305899 + AluSx SINE Alu 1 292 -20 1595 293 101 20 chr12 6481159 6481964 -137304491 + L2 LINE L2 1765 2634 -680 254 340 141 14 chr12 6482013 6482483 -137303972 - L1ME3A LINE L1 -233 5929 5397 2265 109 0 0 chr12 6482489 6482792 -137303663 - AluSc SINE Alu -6 303 1 2374 98 0 0 chr12 6482794 6483089 -137303366 - AluSx SINE Alu -17 295 1 285 244 122 41 chr12 6483918 6484041 -137302414 + MIR SINE MIR 50 182 -80 316 342 153 30 chr12 6484141 6484816 -137301639 + L2 LINE L2 2004 2761 -553 2350 81 17 0 chr12 6485004 6485299 -137301156 + AluSq SINE Alu 1 300 -13 720 243 47 27 chr12 6485300 6485596 -137300859 + L1MC5 LINE L1 7616 7917 -44 2287 82 58 0 chr12 6485606 6485900 -137300555 - AluY SINE Alu 0 311 1 255 330 139 9 chr12 6485920 6485956 -137300499 + L2 LINE L2 3140 3170 -102 1532 188 11 18 chr12 6485956 6486238 -137300217 - AluJo SINE Alu -32 280 1 255 330 139 9 chr12 6486238 6486316 -137300139 + L2 LINE L2 3170 3269 -3 519 311 60 0 chr12 6486688 6486839 -137299616 + MIR3 SINE MIR 35 194 -14 586 148 20 0 chr12 6487206 6487307 -137299148 - L1MD1 LINE L1 0 6242 6140 275 318 19 28 chr12 6487659 6487766 -137298689 - MIR SINE MIR -152 110 5 524 224 239 40 chr12 6487919 6488120 -137298335 + MIR SINE MIR 3 243 -19 274 376 55 0 chr12 6488872 6488981 -137297474 - L2 LINE L2 -9 3263 3149 287 261 133 33 chr12 6489327 6489507 -137296948 - L3b LINE CR1 -100 1483 1286 260 276 0 120 chr12 6489664 6489821 -137296634 - MIR SINE MIR -77 131 22 369 0 0 0 chr12 6490088 6490129 -137296326 + (CA)n Simple_repeat Simple_repeat 2 42 0 856 153 0 0 chr12 6490129 6490247 -137296208 - FRAM SINE Alu -36 140 23 186 305 34 0 chr12 6490393 6490452 -137296003 + L2 LINE L2 3004 3064 -208 1261 154 45 12 chr12 6491642 6491811 -137294644 - AluJo SINE Alu -12 300 119 423 0 0 0 chr12 6491811 6491858 -137294597 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1261 154 45 12 chr12 6491858 6491934 -137294521 - AluJo SINE Alu -193 119 47 383 219 142 52 chr12 6492613 6492768 -137293687 - MIR3 SINE MIR -31 177 9 180 283 0 0 chr12 6493238 6493291 -137293164 - MIR SINE MIR -127 81 29 900 231 52 45 chr12 6493506 6493753 -137292702 + L2 LINE L2 3022 3273 -40 2075 149 70 6 chr12 6493753 6494096 -137292359 - MLT1A1 LTR MaLR 0 365 1 900 231 52 45 chr12 6494096 6494138 -137292317 + L2 LINE L2 3273 3313 0 2197 121 0 0 chr12 6495249 6495556 -137290899 + AluSx SINE Alu 1 307 -5 392 313 45 39 chr12 6495601 6495780 -137290675 + MIR3 SINE MIR 20 199 -9 2685 182 27 16 chr12 6496018 6496534 -137289921 + Charlie1b DNA MER1_type 1 522 -1 238 282 0 42 chr12 6496681 6496752 -137289703 + MIR SINE MIR 109 176 -86 227 33 0 0 chr12 6498861 6498891 -137287564 - MER91B DNA MER1_type -126 64 35 301 263 237 13 chr12 6499771 6499927 -137286528 - MIR3 SINE MIR -3 205 15 2306 82 0 7 chr12 6502181 6502486 -137283969 + AluSx SINE Alu 1 303 -9 1741 133 13 66 chr12 6502802 6503119 -137283336 - AluSx SINE Alu -12 300 1 1789 155 16 10 chr12 6503131 6503163 -137283292 - AluJb SINE Alu 0 312 282 372 43 0 0 chr12 6503163 6503209 -137283246 + (TG)n Simple_repeat Simple_repeat 1 46 0 1789 155 16 10 chr12 6503209 6503485 -137282970 - AluJb SINE Alu -30 282 2 508 247 126 37 chr12 6503488 6503678 -137282777 - MIR SINE MIR -38 224 18 619 256 150 6 chr12 6504783 6504963 -137281492 + MIR SINE MIR 35 240 -22 2197 108 0 0 chr12 6507201 6507497 -137278958 - AluSx SINE Alu -16 296 1 207 0 0 0 chr12 6508818 6508841 -137277614 + (A)n Simple_repeat Simple_repeat 1 23 0 278 239 86 69 chr12 6510326 6510452 -137276003 - MER5B DNA MER1_type -40 138 18 532 239 52 7 chr12 6510653 6510808 -137275647 + MER104 DNA Tc2 1 162 -18 1854 131 0 18 chr12 6511372 6511654 -137274801 + AluSx SINE Alu 15 291 -21 269 258 0 15 chr12 6511844 6511910 -137274545 + MIR SINE MIR 46 110 -152 210 37 0 0 chr12 6512371 6512398 -137274057 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2321 70 0 13 chr12 6513655 6513956 -137272499 + AluY SINE Alu 1 297 -14 2247 98 0 0 chr12 6514950 6515245 -137271210 + AluSx SINE Alu 1 295 -17 2151 109 0 0 chr12 6515247 6515550 -137270905 + AluSc SINE Alu 1 303 -6 377 366 143 8 chr12 6515556 6516026 -137270429 + L1ME3 LINE L1 5397 5929 -233 1520 297 99 19 chr12 6516075 6516880 -137269575 - L2 LINE L2 -680 2634 1765 2202 89 14 3 chr12 6517481 6517772 -137268683 - AluSx SINE Alu -18 294 1 307 297 65 91 chr12 6518523 6518755 -137267700 - L2 LINE L2 -14 3299 3074 241 300 175 8 chr12 6519859 6519979 -137266476 + MIR3 SINE MIR 61 200 -8 457 194 80 209 chr12 6521838 6521966 -137264489 - MER5C DNA MER1_type -41 283 140 2364 55 3 0 chr12 6521966 6522257 -137264198 + AluY SINE Alu 1 292 -19 2130 114 0 16 chr12 6522257 6522565 -137263890 - AluSx SINE Alu -9 303 1 457 194 80 209 chr12 6522565 6522760 -137263695 - MER5C DNA MER1_type -182 142 1 320 292 57 16 chr12 6523037 6523172 -137263283 + MIR SINE MIR 3 141 -67 248 253 58 35 chr12 6523359 6523446 -137263009 + MIR3 SINE MIR 105 193 -15 217 292 130 25 chr12 6523579 6523740 -137262715 - MIR3 SINE MIR -7 201 24 775 258 181 25 chr12 6526432 6526952 -137259503 - L1ME4a LINE L1 -2 6119 5519 239 221 19 19 chr12 6527409 6527492 -137258963 + MIR SINE MIR 69 150 -60 1638 100 6 108 chr12 6527534 6527922 -137258533 - Tigger4(Zombi) DNA MER2_type 0 2731 1 526 275 48 16 chr12 6529289 6529478 -137256977 - MER91A DNA MER1_type -1 195 1 293 182 18 0 chr12 6530623 6530678 -137255777 + (TATG)n Simple_repeat Simple_repeat 1 56 0 615 231 0 0 chr12 6530682 6530989 -137255466 + (TG)n Simple_repeat Simple_repeat 1 307 0 218 271 102 0 chr12 6530989 6531048 -137255407 - MIR SINE MIR -147 115 51 2442 59 3 0 chr12 6531048 6531355 -137255100 - AluY SINE Alu -3 308 1 903 61 0 0 chr12 6531357 6531472 -137254983 - AluSc SINE Alu -1 308 194 1981 128 0 10 chr12 6532671 6532967 -137253488 - AluSx SINE Alu -19 293 1 403 308 77 18 chr12 6533027 6533196 -137253259 - MER5A DNA MER1_type -1 188 10 6369 70 10 6 chr12 6534435 6535329 -137251126 - L1P LINE L1 -3638 2508 1611 366 200 62 0 chr12 6535733 6535813 -137250642 - L2 LINE L2 0 3313 3229 339 25 0 0 chr12 6535829 6535869 -137250586 + (TG)n Simple_repeat Simple_repeat 2 41 0 1491 183 83 40 chr12 6535875 6536247 -137250208 - MLT1D LTR MaLR 0 505 118 445 273 67 16 chr12 6536295 6536607 -137249848 - L2 LINE L2 -231 3082 2758 241 310 95 57 chr12 6536621 6536779 -137249676 - L3 LINE CR1 -224 1353 1190 1555 159 19 0 chr12 6536800 6537057 -137249398 - L1MA5 LINE L1 -2 6298 6037 219 293 151 0 chr12 6537362 6537468 -137248987 + MIR SINE MIR 31 152 -110 2195 117 3 0 chr12 6538663 6538971 -137247484 - AluSx SINE Alu -3 309 1 918 150 0 0 chr12 6540491 6540624 -137245831 + FLAM_C SINE Alu 1 133 -10 481 200 9 9 chr12 6541258 6541368 -137245087 + MER3 DNA MER1_type 100 209 0 219 148 0 49 chr12 6541927 6541988 -137244467 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 259 254 16 0 chr12 6543243 6543306 -137243149 + L2 LINE L2 3209 3272 0 182 224 0 20 chr12 6545017 6545066 -137241389 + L2 LINE L2 2800 2847 -467 202 256 110 12 chr12 6545430 6545512 -137240943 + MIR SINE MIR 46 135 -73 487 239 32 134 chr12 6545842 6546089 -137240366 + MIR SINE MIR 27 248 -14 447 253 96 7 chr12 6547210 6547356 -137239099 + MIR3 SINE MIR 27 185 -23 186 43 0 0 chr12 6548399 6548422 -137238033 + (TATTG)n Simple_repeat Simple_repeat 2 24 0 240 376 120 0 chr12 6548427 6548552 -137237903 + L2 LINE L2 3133 3272 0 242 254 34 0 chr12 6548816 6548875 -137237580 + MIR SINE MIR 85 145 -63 1833 270 144 11 chr12 6548885 6549929 -137236526 + L2 LINE L2 2128 3308 -5 2615 57 0 0 chr12 6550712 6551009 -137235446 + AluY SINE Alu 1 297 -14 180 0 0 0 chr12 6551010 6551030 -137235425 + (CA)n Simple_repeat Simple_repeat 2 21 0 1684 220 58 76 chr12 6552979 6553569 -137232886 - L1MC4a LINE L1 -1920 5888 5310 4986 160 19 17 chr12 6553574 6554248 -137232207 - L1MB1 LINE L1 -6 6162 5477 360 0 0 0 chr12 6554248 6554288 -137232167 + (TG)n Simple_repeat Simple_repeat 2 41 0 4986 160 19 17 chr12 6554288 6554837 -137231618 - L1MB1 LINE L1 -691 5477 4931 456 132 53 99 chr12 6554819 6554971 -137231484 - L1MB1 LINE L1 -1781 4365 4221 * 225 291 46 80 chr12 6555775 6555799 -137230656 - MIR3 SINE MIR -62 146 123 1942 64 4 32 chr12 6555799 6556050 -137230405 + AluSp SINE Alu 44 287 -26 225 291 46 80 chr12 6556050 6556176 -137230279 - MIR3 SINE MIR -85 123 1 2358 98 7 0 chr12 6556599 6556906 -137229549 - AluSx SINE Alu 0 312 4 575 251 117 6 chr12 6557455 6557618 -137228837 + MER5A DNA MER1_type 9 189 0 2365 80 13 13 chr12 6557786 6558085 -137228370 + AluSx SINE Alu 1 299 -13 633 155 0 0 chr12 6558426 6558529 -137227926 + MER31B LTR ERV1 1 103 -363 2234 88 64 10 chr12 6558529 6558825 -137227630 - AluSx SINE Alu 0 312 1 187 385 13 0 chr12 6558826 6558904 -137227551 + MIR SINE MIR 63 141 -67 629 275 75 33 chr12 6559797 6559871 -137226584 - L1ME4a LINE L1 0 6121 6052 2347 113 0 0 chr12 6559871 6560181 -137226274 + AluSx SINE Alu 1 310 -2 629 275 75 33 chr12 6560181 6560531 -137225924 - L1ME4a LINE L1 -69 6052 5679 389 350 89 17 chr12 6560908 6561088 -137225367 + MIR3 SINE MIR 16 208 0 334 348 58 22 chr12 6561869 6562007 -137224448 + L2 LINE L2 3122 3264 -8 369 0 0 0 chr12 6563523 6563564 -137222891 + (CA)n Simple_repeat Simple_repeat 2 42 0 2468 50 0 0 chr12 6563936 6564244 -137222211 + AluY SINE Alu 1 308 0 554 330 68 16 chr12 6564280 6564647 -137221808 + L1ME3A LINE L1 27 412 -5707 2291 118 0 3 chr12 6564715 6565021 -137221434 - AluSg SINE Alu -5 305 1 252 232 185 40 chr12 6565047 6565198 -137221257 + L1ME3A LINE L1 665 837 -5282 889 165 0 0 chr12 6565207 6565334 -137221121 + FLAM_C SINE Alu 1 127 -16 1896 104 8 0 chr12 6565366 6565616 -137220839 + AluSc SINE Alu 51 302 -7 1709 172 20 30 chr12 6565645 6565948 -137220507 + AluJo SINE Alu 1 300 -12 232 248 109 10 chr12 6566016 6566074 -137220381 + L1ME3A LINE L1 1005 1056 -5063 2159 149 0 0 chr12 6566074 6566383 -137220072 + AluSx SINE Alu 1 309 -3 232 248 109 10 chr12 6566383 6566425 -137220030 + L1ME3A LINE L1 1056 1115 -5004 1011 250 69 12 chr12 6566474 6566794 -137219661 - LTR16C LTR ERVL 0 491 154 189 0 0 0 chr12 6566923 6566944 -137219511 + (T)n Simple_repeat Simple_repeat 1 21 0 1905 147 13 33 chr12 6567022 6567328 -137219127 - AluJb SINE Alu -12 300 1 345 293 101 35 chr12 6567749 6568066 -137218389 + L1ME3A LINE L1 2125 2462 -3667 400 259 47 86 chr12 6568216 6568266 -137218189 + L1ME3A LINE L1 4014 4064 -2065 1523 78 5 15 chr12 6568266 6568471 -137217984 + AluSc SINE Alu 1 203 -106 400 259 47 86 chr12 6568471 6568485 -137217970 + L1ME3A LINE L1 4064 4077 -2052 2505 68 3 3 chr12 6568485 6568794 -137217661 - AluY SINE Alu -2 309 1 400 259 47 86 chr12 6568794 6568960 -137217495 + L1ME3A LINE L1 4077 4236 -1893 490 249 75 30 chr12 6569072 6569096 -137217359 + L1ME3A LINE L1 4391 4412 -1717 2129 114 47 3 chr12 6569096 6569395 -137217060 + AluSx SINE Alu 1 312 0 490 249 75 30 chr12 6569395 6569635 -137216820 + L1ME3A LINE L1 4412 4667 -1462 1246 54 0 7 chr12 6569636 6569785 -137216670 + AluY SINE Alu 154 301 -10 2209 90 7 0 chr12 6569808 6570098 -137216357 + AluSp SINE Alu 1 292 -21 2401 80 13 0 chr12 6570099 6570399 -137216056 + AluY SINE Alu 1 304 -7 1019 119 44 6 chr12 6570493 6570653 -137215802 + AluSq SINE Alu 1 166 -147 8030 124 127 32 chr12 6570653 6572202 -137214253 + pTR5 LTR ERV1 743 2438 0 817 149 0 35 chr12 6572207 6572348 -137214107 + AluSq SINE Alu 165 300 -13 550 281 93 24 chr12 6572351 6572852 -137213603 + L1ME3A LINE L1 5369 5939 -214 1803 178 0 13 chr12 6572890 6573188 -137213267 + AluJb SINE Alu 11 304 -8 313 266 53 35 chr12 6573343 6573456 -137212999 + L1MC4 LINE L1 7926 8040 -2 374 253 138 23 chr12 6573488 6573662 -137212793 - L1ME LINE L1 -395 5726 5533 2264 60 42 7 chr12 6573727 6574011 -137212444 + AluY SINE Alu 1 294 -17 232 292 101 0 chr12 6574012 6574180 -137212275 - L1P4 LINE L1 -727 5438 5254 2299 121 0 3 chr12 6574304 6574617 -137211838 - AluSx SINE Alu 0 312 1 186 310 0 17 chr12 6575213 6575271 -137211184 - L2 LINE L2 -18 3254 3198 1217 221 79 79 chr12 6575291 6575603 -137210852 - MLT1C LTR MaLR -6 461 150 2178 132 7 0 chr12 6575603 6575907 -137210548 - AluSx SINE Alu -6 306 1 1870 133 10 58 chr12 6575909 6576218 -137210237 - AluSx SINE Alu -18 294 1 1217 221 79 79 chr12 6576218 6576358 -137210097 - MLT1C LTR MaLR -317 150 6 544 284 59 6 chr12 6576363 6576532 -137209923 - MIR SINE MIR -80 182 5 2266 90 3 20 chr12 6576637 6576937 -137209518 - AluY SINE Alu -16 295 1 342 277 92 31 chr12 6576949 6577079 -137209376 + L2 LINE L2 3167 3304 -9 563 266 25 61 chr12 6577405 6577489 -137208966 - L1ME LINE L1 -309 5812 5727 2629 59 0 0 chr12 6577489 6577794 -137208661 - AluY SINE Alu -6 305 1 563 266 25 61 chr12 6577794 6577987 -137208468 - L1ME LINE L1 -394 5727 5545 2039 159 124 28 chr12 6578419 6578877 -137207578 + MLT1D LTR MaLR 4 505 0 310 246 94 0 chr12 6579680 6579825 -137206630 + L1M4 LINE L1 2425 2620 -3526 988 192 0 6 chr12 6579827 6579994 -137206461 + AluJo SINE Alu 83 248 -64 1076 206 38 8 chr12 6579994 6580232 -137206223 - MER66B LTR ERV1 -7 479 235 3668 165 116 30 chr12 6580233 6581618 -137204837 + pTR5 LTR ERV1 741 2606 0 753 130 17 197 chr12 6581623 6581770 -137204685 - MER66A LTR ERV1 -256 222 133 2027 134 0 0 chr12 6581770 6582047 -137204408 - AluSx SINE Alu -35 277 1 753 130 17 197 chr12 6582047 6582138 -137204317 - MER66A LTR ERV1 -345 133 27 353 153 0 0 chr12 6582145 6582204 -137204251 + AluJo SINE Alu 238 296 -6 2130 112 0 30 chr12 6582210 6582515 -137203940 + AluSx SINE Alu 6 301 -11 277 234 26 0 chr12 6582530 6582607 -137203848 + L1MC/D LINE L1 5629 5707 -652 2062 66 96 0 chr12 6582608 6582880 -137203575 - AluY SINE Alu -13 298 1 1453 182 29 26 chr12 6582917 6583230 -137203225 + LOR1b LTR ERV1 70 383 -78 852 269 10 17 chr12 6583500 6583798 -137202657 + AluSx SINE Alu 17 312 0 232 292 101 0 chr12 6583921 6584089 -137202366 + L1P4 LINE L1 5254 5438 -727 1714 151 42 11 chr12 6584090 6584375 -137202080 - AluY SINE Alu -17 294 1 293 252 67 34 chr12 6584469 6584588 -137201867 + L1ME LINE L1 5577 5699 -422 1846 142 14 35 chr12 6584958 6585247 -137201208 - AluJb SINE Alu -29 283 1 420 279 114 67 chr12 6585690 6586005 -137200450 + L1 LINE L1 2164 2493 -3653 281 256 67 0 chr12 6586081 6586171 -137200284 - MLT1J LTR MaLR -60 451 356 227 235 0 44 chr12 6586574 6586642 -137199813 + L1MEd LINE L1 330 394 -5725 2231 87 11 0 chr12 6586654 6586940 -137199515 + AluY SINE Alu 1 289 -22 35 27 0 0 chr12 6587127 6587164 -137199291 + GC_rich Low_complexity Low_complexity 1 37 0 272 134 34 34 chr12 6587220 6587339 -137199116 + (TTG)n Simple_repeat Simple_repeat 2 120 0 1442 142 0 0 chr12 6587494 6587699 -137198756 + AluSq SINE Alu 107 311 -2 311 218 0 0 chr12 6587700 6587755 -137198700 - L1MC4 LINE L1 -221 7821 7767 2577 59 0 0 chr12 6587755 6588058 -137198397 + AluY SINE Alu 1 303 -8 760 138 144 28 chr12 6588059 6588240 -137198215 + L1MD1 LINE L1 5828 6029 -213 318 231 13 0 chr12 6588240 6588318 -137198137 + LOR1a LTR ERV1 1 79 -418 2555 45 3 3 chr12 6588330 6588638 -137197817 - AluY SINE Alu -3 308 1 1590 164 23 26 chr12 6588675 6588985 -137197470 + LOR1b LTR ERV1 70 378 -83 2034 125 7 0 chr12 6588985 6589272 -137197183 + AluSx SINE Alu 1 289 -23 672 294 33 82 chr12 6589474 6589926 -137196529 - L2 LINE L2 -32 3240 2811 3086 129 66 15 chr12 6590077 6590276 -137196179 + MER41C LTR ERV1 1 188 -366 2325 104 3 0 chr12 6590276 6590573 -137195882 - AluSg SINE Alu -12 298 1 3086 129 66 15 chr12 6590573 6590900 -137195555 + MER41C LTR ERV1 188 554 0 189 295 53 11 chr12 6590985 6591080 -137195375 - MIR3 SINE MIR -102 106 8 2354 102 3 0 chr12 6591895 6592200 -137194255 + AluSx SINE Alu 1 306 -6 2532 68 0 10 chr12 6592320 6592629 -137193826 - AluY SINE Alu -5 306 1 433 272 76 48 chr12 6592712 6592962 -137193493 + Charlie8 DNA MER1_type 215 471 -1946 685 243 88 23 chr12 6592974 6593348 -137193107 - MLT1F LTR MaLR -106 436 1 691 285 50 68 chr12 6593409 6593827 -137192628 + L1M4 LINE L1 2320 2744 -3402 2326 62 0 4 chr12 6593827 6594102 -137192353 + AluY SINE Alu 1 274 -37 261 75 0 0 chr12 6594106 6594146 -137192309 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 691 285 50 68 chr12 6594146 6594340 -137192115 + L1M4 LINE L1 2747 2926 -3220 2558 59 0 0 chr12 6594471 6594760 -137191695 - AluY SINE Alu -20 291 3 2055 139 3 0 chr12 6594966 6595268 -137191187 - AluSg SINE Alu -7 303 1 598 271 65 13 chr12 6595404 6595559 -137190896 - MLT1J LTR MaLR -348 163 1 1705 287 80 33 chr12 6595590 6596121 -137190334 + L1M4 LINE L1 3644 4149 -1997 2279 60 57 7 chr12 6596121 6596402 -137190053 + AluY SINE Alu 1 295 -16 1705 287 80 33 chr12 6596402 6597086 -137189369 + L1M4 LINE L1 4149 4916 -1230 2252 90 4 0 chr12 6597378 6597656 -137188799 - AluSq SINE Alu -10 303 25 304 331 44 44 chr12 6597704 6597885 -137188570 + L1ME3A LINE L1 5963 6143 -27 2483 67 0 7 chr12 6598455 6598755 -137187700 + AluSc SINE Alu 1 298 -11 2339 79 10 10 chr12 6599139 6599444 -137187011 - AluSq SINE Alu -8 305 1 1676 171 7 7 chr12 6599740 6600021 -137186434 - AluJb SINE Alu -30 282 2 457 332 46 37 chr12 6600039 6600280 -137186175 + L1ME4a LINE L1 5775 6017 -104 359 266 141 8 chr12 6600283 6600411 -137186044 - MER5A DNA MER1_type -3 186 42 1722 212 37 8 chr12 6600411 6600812 -137185643 - MER63B DNA MER1_type -23 413 1 1299 189 14 21 chr12 6600881 6601172 -137185283 - L1MA5 LINE L1 0 6300 6012 476 277 104 42 chr12 6602068 6602357 -137184098 - L2 LINE L2 -7 3306 3000 5798 141 240 20 chr12 6602357 6603738 -137182717 + pTR5 LTR ERV1 753 2438 0 1071 254 56 25 chr12 6603765 6604229 -137182226 - L2 LINE L2 -350 2964 2437 811 237 102 102 chr12 6604666 6605087 -137181368 - MLT1J LTR MaLR -60 451 28 1750 174 7 13 chr12 6605087 6605386 -137181069 + AluJb SINE Alu 1 297 -15 811 237 102 102 chr12 6605386 6605415 -137181040 - MLT1J LTR MaLR -482 29 1 889 66 22 22 chr12 6605499 6605635 -137180820 - MER85 DNA T2_type -3 136 1 416 317 84 6 chr12 6605693 6605860 -137180595 - MIR SINE MIR -67 195 16 2450 84 0 0 chr12 6606193 6606492 -137179963 - AluY SINE Alu -12 299 1 220 310 17 0 chr12 6606867 6606925 -137179530 - MIR3 SINE MIR -1 207 149 524 229 95 50 chr12 6607022 6607201 -137179254 + MIR SINE MIR 13 199 -63 824 153 24 0 chr12 6607201 6607325 -137179130 + FLAM_C SINE Alu 1 127 -16 34 0 0 0 chr12 6607325 6607359 -137179096 + AT_rich Low_complexity Low_complexity 1 34 0 1862 117 4 0 chr12 6607359 6607615 -137178840 + AluY SINE Alu 37 293 -18 2339 92 7 3 chr12 6607617 6607923 -137178532 + AluSc SINE Alu 1 307 -2 1645 109 143 4 chr12 6607962 6608259 -137178196 - AluSq SINE Alu 0 334 1 3112 204 21 20 chr12 6608263 6608863 -137177592 + MER82 DNA MER2_type 1 604 -49 2475 81 0 7 chr12 6608863 6609173 -137177282 - AluY SINE Alu -3 308 1 3112 204 21 20 chr12 6609173 6609224 -137177231 + MER82 DNA MER2_type 604 653 0 217 269 0 0 chr12 6609225 6609277 -137177178 + MIR SINE MIR 198 249 -13 413 288 61 8 chr12 6609289 6609421 -137177034 - MIR SINE MIR -76 186 48 2533 81 0 3 chr12 6609614 6609924 -137176531 + AluY SINE Alu 1 309 -2 491 241 118 15 chr12 6610468 6610663 -137175792 + MER58C DNA MER1_type 1 215 0 202 348 36 18 chr12 6610703 6610815 -137175640 + MIR SINE MIR 34 147 -61 184 261 130 78 chr12 6610989 6611104 -137175351 - MIR SINE MIR -114 148 28 2281 96 3 0 chr12 6611250 6611532 -137174923 - AluSq SINE Alu -30 283 1 2435 94 7 0 chr12 6612638 6612947 -137173508 - AluSx SINE Alu -1 311 1 2468 153 84 6 chr12 6612985 6613484 -137172971 + L1MC3 LINE L1 6137 6260 -84 383 180 100 31 chr12 6613480 6613505 -137172950 + L1MC3 LINE L1 7677 7699 -86 * 2277 104 7 10 chr12 6613505 6613812 -137172643 + AluSx SINE Alu 1 306 -6 383 180 100 31 chr12 6613812 6613918 -137172537 + L1MC3 LINE L1 7699 7785 0 230 196 11 120 chr12 6613992 6614024 -137172431 + MIR SINE MIR 2 36 -226 2662 40 0 3 chr12 6614024 6614324 -137172131 + AluY SINE Alu 1 299 -12 230 196 11 120 chr12 6614324 6614383 -137172072 + MIR SINE MIR 36 83 -179 360 316 9 9 chr12 6615162 6615276 -137171179 + MIR SINE MIR 24 137 -71 296 258 34 11 chr12 6615556 6615645 -137170810 - MIR SINE MIR -84 124 34 1908 110 69 39 chr12 6615968 6616332 -137170123 + THE1C LTR MaLR 1 375 0 467 220 0 23 chr12 6617308 6617440 -137169015 + L1MC4a LINE L1 4926 5054 -1092 25 51 0 0 chr12 6617517 6617556 -137168899 + AT_rich Low_complexity Low_complexity 1 39 0 1248 248 177 18 chr12 6617636 6617671 -137168784 + L1MC4a LINE L1 5258 5286 -2522 2225 128 3 0 chr12 6617671 6617968 -137168487 + AluSx SINE Alu 1 298 -14 1248 248 177 18 chr12 6617968 6618087 -137168368 + L1MC4a LINE L1 5286 5385 -2423 2211 100 0 32 chr12 6618087 6618397 -137168058 + AluY SINE Alu 1 300 -11 1248 248 177 18 chr12 6618397 6618847 -137167608 + L1MC4a LINE L1 5385 5959 -1849 2276 73 0 4 chr12 6618848 6619122 -137167333 + AluY SINE Alu 1 273 -38 379 75 0 0 chr12 6619122 6619175 -137167280 + Alu SINE Alu 242 294 -7 1792 164 13 41 chr12 6619393 6619534 -137166921 + AluJb SINE Alu 1 144 -168 2489 46 0 36 chr12 6619534 6619837 -137166618 + AluY SINE Alu 1 292 -19 1792 164 13 41 chr12 6619837 6620013 -137166442 + AluJb SINE Alu 144 309 -3 1083 76 15 0 chr12 6620607 6620738 -137165717 - AluSq/x SINE Alu -179 133 1 329 305 178 9 chr12 6620950 6621163 -137165292 - LTR33 LTR ERVL -115 406 158 404 299 57 86 chr12 6621421 6621806 -137164649 + L2 LINE L2 2899 3272 0 934 212 92 39 chr12 6622574 6622857 -137163598 - MLT1C LTR MaLR 0 467 170 1038 194 70 0 chr12 6622860 6623102 -137163353 - L1MB3 LINE L1 -65 6118 5860 817 209 5 31 chr12 6623110 6623301 -137163154 - MLT1C LTR MaLR -273 194 9 378 323 99 10 chr12 6623737 6624130 -137162325 - L2 LINE L2 -6 3307 2880 751 170 0 9 chr12 6624133 6624600 -137161855 + (TG)n Simple_repeat Simple_repeat 1 462 0 2332 104 7 0 chr12 6625879 6626188 -137160267 + AluSq SINE Alu 1 311 -2 398 265 197 0 chr12 6626266 6626413 -137160042 + L3 LINE CR1 1263 1438 -139 890 237 47 5 chr12 6626884 6627099 -137159356 - MIR SINE MIR -14 248 25 2032 184 78 23 chr12 6627172 6627644 -137158811 - MLT1D LTR MaLR -7 498 1 1507 130 113 45 chr12 6627662 6627954 -137158501 + AluSx SINE Alu 1 312 0 1031 230 41 70 chr12 6628159 6628375 -137158080 - L1MC5 LINE L1 -55 7906 7706 2687 42 0 3 chr12 6628375 6628685 -137157770 + AluY SINE Alu 1 309 -2 1031 230 41 70 chr12 6628685 6628881 -137157574 - L1MC5 LINE L1 -255 7706 7506 22 35 0 0 chr12 6628956 6628985 -137157470 + AT_rich Low_complexity Low_complexity 1 29 0 217 360 13 0 chr12 6629407 6629482 -137156973 + MIR SINE MIR 32 107 -101 1237 179 112 13 chr12 6629762 6629839 -137156616 + L1MD3 LINE L1 7653 7721 -274 2172 116 10 7 chr12 6629839 6630149 -137156306 + AluSx SINE Alu 1 311 -1 1237 179 112 13 chr12 6630149 6630383 -137156072 + L1MD3 LINE L1 7721 7995 0 450 149 0 0 chr12 6630392 6630459 -137155996 + AluSg/x SINE Alu 205 271 -29 348 149 11 35 chr12 6630462 6630549 -137155906 + GA-rich Low_complexity Low_complexity 3 87 0 2014 163 0 0 chr12 6630594 6630894 -137155561 + AluJb SINE Alu 1 300 -12 201 214 89 0 chr12 6631628 6631684 -137154771 + L2 LINE L2 3203 3263 -9 292 308 57 58 chr12 6631864 6632074 -137154381 - MIR SINE MIR -50 212 3 519 249 194 15 chr12 6632546 6632747 -137153708 + MIR SINE MIR 23 259 -3 952 160 0 0 chr12 6632822 6632966 -137153489 - AluSg/x SINE Alu -20 290 147 645 106 53 9 chr12 6632966 6633079 -137153376 - LTR5 LTR ERVK 0 969 852 4658 124 187 73 chr12 6633082 6634487 -137151968 - pTR5 LTR ERV1 0 2438 742 6396 62 82 1 chr12 6634487 6635277 -137151178 - LTR5 LTR ERVK -115 854 1 1209 102 13 0 chr12 6635300 6635457 -137150998 - AluSc SINE Alu -20 289 131 2629 53 0 0 chr12 6635458 6635759 -137150696 - AluY SINE Alu -10 301 1 481 193 119 51 chr12 6636134 6636310 -137150145 - L2 LINE L2 -1 3312 3125 1358 175 144 12 chr12 6637311 6637693 -137148762 - MLT1D LTR MaLR -8 497 15 1967 117 3 73 chr12 6637705 6637857 -137148598 + AluSx SINE Alu 1 121 -191 2378 88 0 0 chr12 6637857 6638142 -137148313 + AluSg SINE Alu 8 292 -18 1071 163 30 15 chr12 6638103 6638305 -137148150 + AluSg/x SINE Alu 88 292 -18 1967 117 3 73 chr12 6638142 6638305 -137148150 + AluSx SINE Alu 121 294 -18 242 335 102 28 chr12 6638451 6638705 -137147750 - L2 LINE L2 -6 3266 2994 365 271 90 36 chr12 6639177 6639223 -137147232 - MIR3 SINE MIR -12 196 154 2414 123 121 139 chr12 6639223 6639739 -137146716 - MER4A LTR ERV1 0 664 140 2343 60 0 3 chr12 6639739 6640039 -137146416 - AluY SINE Alu -8 303 5 2414 123 121 139 chr12 6640039 6640056 -137146399 - MER4A LTR ERV1 -524 140 124 2278 84 0 0 chr12 6640056 6640355 -137146100 - AluSc SINE Alu -10 299 1 2414 123 121 139 chr12 6640355 6640496 -137145959 - MER4A LTR ERV1 -540 124 1 365 271 90 36 chr12 6640496 6640615 -137145840 - MIR3 SINE MIR -54 154 22 220 336 37 0 chr12 6640715 6640822 -137145633 - MIR SINE MIR -3 259 149 206 275 108 62 chr12 6641111 6641369 -137145086 + L2 LINE L2 2844 3113 -159 268 294 123 12 chr12 6641649 6641812 -137144643 + L2 LINE L2 2626 2806 -508 310 293 106 8 chr12 6642173 6642296 -137144159 + L1ME4a LINE L1 5982 6116 -5 208 95 12 83 chr12 6643282 6643366 -137143089 + (CGGGGG)n Simple_repeat Simple_repeat 4 81 0 1696 162 17 7 chr12 6644807 6645109 -137141346 + AluJb SINE Alu 1 305 -7 353 318 101 14 chr12 6645824 6645972 -137140483 - MIR3 SINE MIR -28 180 20 301 309 0 40 chr12 6646183 6646309 -137140146 - MIR SINE MIR -112 150 30 664 244 44 11 chr12 6647086 6647266 -137139189 + MIR3 SINE MIR 12 197 -11 543 166 131 9 chr12 6647334 6647453 -137139002 + L1PB4 LINE L1 6034 6165 -1 222 311 113 9 chr12 6647668 6647774 -137138681 + MIR SINE MIR 113 229 -33 181 28 0 83 chr12 6648648 6648684 -137137771 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1722 153 10 32 chr12 6649261 6649574 -137136881 - AluJb SINE Alu -6 306 1 1481 167 85 4 chr12 6649951 6650232 -137136223 - AluJo SINE Alu -8 304 1 2310 97 3 0 chr12 6650993 6651301 -137135154 + AluSp SINE Alu 1 309 -4 2080 97 28 0 chr12 6651609 6651897 -137134558 - AluSp SINE Alu 0 313 18 2114 99 31 0 chr12 6652018 6652310 -137134145 - AluSx SINE Alu -11 301 1 2328 100 0 0 chr12 6652726 6653035 -137133420 - AluSx SINE Alu -3 309 1 619 296 38 46 chr12 6653782 6653886 -137132569 + MIR SINE MIR 1 104 -158 2190 87 3 3 chr12 6653886 6654186 -137132269 - AluSg SINE Alu -10 300 1 619 296 38 46 chr12 6654186 6654321 -137132134 + MIR SINE MIR 104 238 -24 312 268 18 45 chr12 6655254 6655366 -137131089 + MIR3 SINE MIR 63 171 -37 377 326 21 0 chr12 6656055 6656199 -137130256 + MIR SINE MIR 95 241 -21 200 176 0 0 chr12 6656208 6656242 -137130213 + (CTG)n Simple_repeat Simple_repeat 1 34 0 330 265 68 38 chr12 6657119 6657251 -137129204 + MIR SINE MIR 20 155 -107 1678 133 14 14 chr12 6657393 6657672 -137128783 - AluJb SINE Alu -4 308 30 592 217 97 23 chr12 6658413 6658588 -137127867 - MER5A DNA MER1_type -1 188 1 387 330 5 60 chr12 6659990 6660175 -137126280 - MIR SINE MIR -41 221 47 1700 157 7 30 chr12 6660291 6660590 -137125865 + AluJb SINE Alu 1 292 -20 1979 135 0 10 chr12 6660993 6661290 -137125165 + AluJb SINE Alu 1 294 -18 2318 94 0 0 chr12 6662048 6662356 -137124099 - AluSx SINE Alu -4 308 1 2397 77 0 0 chr12 6662525 6662835 -137123620 - AluY SINE Alu -1 310 1 1783 191 28 8 chr12 6663770 6664162 -137122293 - L1MD3 LINE L1 -8 7987 7588 1770 128 0 64 chr12 6664744 6665056 -137121399 + AluJo SINE Alu 1 292 -20 2413 60 0 0 chr12 6666312 6666611 -137119844 - AluY SINE Alu -12 299 1 438 245 63 14 chr12 6668100 6668243 -137118212 - L1ME3A LINE L1 -241 5929 5780 2277 93 3 0 chr12 6670236 6670548 -137115907 - AluSp SINE Alu 0 313 1 483 306 87 15 chr12 6670555 6670751 -137115704 - MIR SINE MIR -7 255 46 233 94 0 0 chr12 6671318 6671350 -137115105 - Alu SINE Alu -227 75 44 1923 103 0 25 chr12 6671350 6671632 -137114823 + AluSx SINE Alu 31 305 -7 198 226 19 0 chr12 6672391 6672444 -137114011 + MIR SINE MIR 78 131 -77 587 211 16 16 chr12 6674326 6674454 -137112001 - MIR SINE MIR -59 203 76 533 259 8 15 chr12 6674924 6675055 -137111400 - MIR SINE MIR -58 150 21 718 120 19 0 chr12 6677398 6677506 -137108949 - HY1 scRNA scRNA -2 110 1 326 257 154 22 chr12 6677758 6677894 -137108561 - MIR SINE MIR -26 236 83 261 364 148 0 chr12 6679369 6679578 -137106877 - MIR SINE MIR -11 251 12 2242 95 16 3 chr12 6680019 6680325 -137106130 - AluSq SINE Alu -3 310 1 408 155 95 0 chr12 6680366 6680450 -137106005 + AluSg/x SINE Alu 205 296 -13 221 21 42 42 chr12 6680933 6680981 -137105474 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2386 67 3 0 chr12 6681396 6681693 -137104762 - AluSp SINE Alu -15 298 1 264 362 17 17 chr12 6681734 6681850 -137104605 - MIR SINE MIR -62 146 31 241 171 162 124 chr12 6681892 6681997 -137104458 + L2 LINE L2 3205 3313 0 519 249 0 34 chr12 6682006 6682192 -137104263 - MLT2F LTR ERVL 0 663 436 1869 136 3 10 chr12 6682217 6682518 -137103937 - AluJb SINE Alu -13 299 1 733 176 11 13 chr12 6682541 6682724 -137103731 - MLT2F LTR ERVL -434 229 2 2124 161 67 38 chr12 6682958 6683384 -137103071 + L1MB4 LINE L1 5689 6132 -48 1627 191 20 0 chr12 6683384 6683678 -137102777 + AluJb SINE Alu 1 300 -12 2124 161 67 38 chr12 6683678 6683729 -137102726 + L1MB4 LINE L1 6132 6180 0 2119 111 3 0 chr12 6683840 6684146 -137102309 - AluSx SINE Alu -5 307 1 407 329 114 57 chr12 6685313 6685504 -137100951 + L3 LINE CR1 455 634 -943 2206 89 0 13 chr12 6685504 6685808 -137100647 + AluSx SINE Alu 1 300 -12 2082 108 7 3 chr12 6685810 6686107 -137100348 + AluSc SINE Alu 1 298 -11 407 329 114 57 chr12 6686107 6686262 -137100193 + L3 LINE CR1 634 824 -753 329 228 80 124 chr12 6686438 6686541 -137099914 - MLT1J LTR MaLR -174 337 231 2191 103 0 3 chr12 6686541 6686842 -137099613 + AluY SINE Alu 1 300 -11 329 228 80 124 chr12 6686842 6686988 -137099467 - MLT1J LTR MaLR -280 231 99 184 304 45 45 chr12 6687050 6687162 -137099293 - MIR SINE MIR -65 143 32 736 325 166 28 chr12 6687206 6687850 -137098605 + L3 LINE CR1 793 1525 -52 3675 93 0 6 chr12 6688482 6688996 -137097459 - MER9 LTR ERVK 0 511 1 2323 104 3 0 chr12 6689078 6689376 -137097079 - AluSp SINE Alu -14 299 1 2513 67 0 0 chr12 6689378 6689677 -137096778 - AluY SINE Alu -7 304 6 2292 112 0 3 chr12 6690206 6690510 -137095945 - AluSx SINE Alu -7 305 3 187 118 59 0 chr12 6690895 6690929 -137095526 + MIR SINE MIR 117 152 -110 2361 118 0 0 chr12 6690944 6691250 -137095205 + AluY SINE Alu 1 306 -5 242 162 0 0 chr12 6691566 6691603 -137094852 + Alu SINE Alu 2 38 -263 2075 129 23 13 chr12 6691603 6691912 -137094543 - AluSx SINE Alu 0 312 1 645 256 97 13 chr12 6692668 6692966 -137093489 - LTR50 LTR ERVL 0 678 296 2223 122 0 0 chr12 6694105 6694399 -137092056 - AluSx SINE Alu -18 294 1 2571 73 0 0 chr12 6694853 6695156 -137091299 - AluY SINE Alu -8 303 1 1929 120 7 37 chr12 6695327 6695626 -137090829 - AluJb SINE Alu -22 290 1 1195 149 0 0 chr12 6695827 6696008 -137090447 + AluSg/x SINE Alu 128 308 -2 346 269 57 46 chr12 6696017 6696192 -137090263 - MLT1L LTR MaLR -365 250 74 438 228 0 20 chr12 6696327 6696428 -137090027 - L2 LINE L2 -2644 670 572 1945 130 56 11 chr12 6696676 6696961 -137089494 + AluSg SINE Alu 1 298 -12 384 228 99 0 chr12 6697129 6697230 -137089225 + MIR SINE MIR 35 145 -117 2287 101 13 0 chr12 6697234 6697541 -137088914 + AluSq SINE Alu 1 311 -2 465 253 95 13 chr12 6697827 6697985 -137088470 + L2 LINE L2 576 746 -2568 230 188 203 14 chr12 6698004 6698073 -137088382 + MER112 DNA MER1_type 5 86 -174 2349 112 0 3 chr12 6698085 6698397 -137088058 + AluY SINE Alu 1 311 0 547 267 158 0 chr12 6698404 6698488 -137087967 + MER112 DNA MER1_type 64 133 -127 201 74 0 0 chr12 6698488 6698515 -137087940 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 547 267 158 0 chr12 6698515 6698595 -137087860 + MER112 DNA MER1_type 133 254 -6 400 186 0 0 chr12 6698682 6698752 -137087703 + FLAM_A SINE Alu 16 85 -57 228 246 0 0 chr12 6698790 6698847 -137087608 - L2 LINE L2 -1215 2099 2043 368 241 183 16 chr12 6698849 6699040 -137087415 + L2 LINE L2 834 1056 -2258 2303 95 0 0 chr12 6699040 6699369 -137087086 + AluSq SINE Alu 1 329 0 418 224 39 83 chr12 6699376 6699401 -137087054 - L2 LINE L2 -1 3312 3287 2315 106 0 7 chr12 6699401 6699704 -137086751 + AluSx SINE Alu 1 301 -11 418 224 39 83 chr12 6699704 6699834 -137086621 - L2 LINE L2 -26 3287 3164 2517 90 3 0 chr12 6699835 6700147 -137086308 + AluSp SINE Alu 1 313 0 14039 114 36 36 chr12 6700184 6702547 -137083908 - Tigger1 DNA MER2_type 0 2418 52 2460 67 0 17 chr12 6702547 6702847 -137083608 + AluY SINE Alu 2 296 -15 14039 114 36 36 chr12 6702847 6702897 -137083558 - Tigger1 DNA MER2_type -2366 52 4 339 242 20 0 chr12 6702901 6703000 -137083455 - L2 LINE L2 -363 2950 2850 2058 148 7 0 chr12 6703001 6703305 -137083150 + AluJb SINE Alu 1 306 -6 207 0 0 0 chr12 6703306 6703329 -137083126 + (CA)n Simple_repeat Simple_repeat 2 24 0 327 238 0 0 chr12 6703334 6703397 -137083058 + L1MC4 LINE L1 6640 6702 -1340 1712 253 165 39 chr12 6703399 6703712 -137082743 - L2 LINE L2 -453 2861 2589 2506 54 3 3 chr12 6703712 6704009 -137082446 - AluY SINE Alu -14 297 1 1712 253 165 39 chr12 6704009 6704533 -137081922 - L2 LINE L2 -725 2589 1919 2379 95 0 0 chr12 6704534 6704829 -137081626 - AluSq SINE Alu -6 307 13 1270 84 0 0 chr12 6704842 6704996 -137081459 - AluSq SINE Alu -8 305 152 200 239 155 0 chr12 6706320 6706391 -137080064 + MIR SINE MIR 107 188 -74 1315 175 69 95 chr12 6706404 6706509 -137079946 + MLT2D LTR ERVL 3 109 -305 2241 97 26 26 chr12 6706509 6706820 -137079635 + AluSx SINE Alu 1 311 -1 1315 175 69 95 chr12 6706820 6707137 -137079318 + MLT2D LTR ERVL 109 414 0 195 344 33 0 chr12 6707525 6707615 -137078840 - MIR3 SINE MIR -29 179 87 184 388 30 8 chr12 6707654 6707788 -137078667 - MIR SINE MIR -55 153 17 240 233 0 0 chr12 6708137 6708180 -137078275 - L2 LINE L2 -259 3054 3012 338 213 33 57 chr12 6708245 6708367 -137078088 + MIR SINE MIR 25 143 -119 862 142 0 0 chr12 6708378 6708505 -137077950 + FLAM_C SINE Alu 15 141 -2 396 194 83 9 chr12 6708511 6708619 -137077836 + MIR SINE MIR 137 252 -10 2426 90 0 7 chr12 6708641 6708942 -137077513 + AluSg1 SINE Alu 1 299 -10 276 30 0 0 chr12 6708942 6708975 -137077480 + (TA)n Simple_repeat Simple_repeat 2 34 0 2156 141 3 0 chr12 6708981 6709279 -137077176 + AluSq SINE Alu 1 299 -14 1975 149 0 7 chr12 6709296 6709598 -137076857 + AluSx SINE Alu 1 300 -12 276 170 0 0 chr12 6710057 6710110 -137076345 + (CA)n Simple_repeat Simple_repeat 1 53 0 306 327 6 12 chr12 6710254 6710419 -137076036 + L1MC4a LINE L1 5872 6035 -1773 2307 111 0 7 chr12 6710789 6711095 -137075360 + AluSq SINE Alu 1 304 -9 823 164 57 0 chr12 6711102 6711242 -137075213 + FRAM SINE Alu 11 158 -18 54 29 0 0 chr12 6711283 6711351 -137075104 + AT_rich Low_complexity Low_complexity 1 68 0 216 0 0 0 chr12 6712131 6712155 -137074300 + (A)n Simple_repeat Simple_repeat 1 24 0 546 290 68 27 chr12 6712175 6712396 -137074059 + MIR SINE MIR 21 250 -12 2502 71 0 10 chr12 6712425 6712733 -137073722 - AluY SINE Alu -6 305 1 359 283 106 33 chr12 6712798 6712978 -137073477 - MLT1K LTR MaLR 0 588 396 204 186 0 0 chr12 6713017 6713076 -137073379 + T-rich Low_complexity Low_complexity 1 59 0 240 111 0 0 chr12 6713491 6713527 -137072928 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 304 39 0 0 chr12 6713528 6713579 -137072876 + AluSp/q SINE Alu 253 303 0 652 277 64 84 chr12 6713595 6713899 -137072556 - MLT1E LTR MaLR -149 444 135 2372 61 4 0 chr12 6713899 6714209 -137072246 - AluY SINE Alu 0 311 1 1818 175 3 3 chr12 6714211 6714496 -137071959 - AluJb SINE Alu -17 295 11 652 277 64 84 chr12 6714496 6714627 -137071828 - MLT1E LTR MaLR -459 134 14 803 219 112 85 chr12 6714627 6714717 -137071738 - L2 LINE L2 -520 2794 2708 2375 98 0 0 chr12 6714717 6715012 -137071443 - AluSc SINE Alu -14 295 1 803 219 112 85 chr12 6715012 6715038 -137071417 - L2 LINE L2 -606 2708 2684 2034 103 0 35 chr12 6715038 6715353 -137071102 + AluY SINE Alu 1 305 0 803 219 112 85 chr12 6715353 6715600 -137070855 - L2 LINE L2 -630 2684 2419 251 307 168 0 chr12 6715747 6715848 -137070607 - L2 LINE L2 -5 3267 3150 1354 154 82 82 chr12 6716115 6716290 -137070165 - AluJo SINE Alu -20 292 115 315 0 0 0 chr12 6716290 6716325 -137070130 + (TG)n Simple_repeat Simple_repeat 2 36 0 1354 154 82 82 chr12 6716325 6716441 -137070014 - AluJo SINE Alu -196 116 1 1054 237 101 29 chr12 6716468 6716953 -137069502 - LTR33 LTR ERVL -1 520 1 326 276 168 0 chr12 6718389 6718531 -137067924 - MIR SINE MIR -55 207 33 2017 112 0 58 chr12 6718592 6718905 -137067550 + AluSx SINE Alu 1 295 -17 419 261 62 15 chr12 6719459 6719589 -137066866 + MER5B DNA MER1_type 43 178 0 2328 95 0 3 chr12 6719743 6720039 -137066416 + AluSg SINE Alu 1 295 -15 696 267 23 28 chr12 6720321 6720538 -137065917 + MIR SINE MIR 22 237 -25 244 229 0 0 chr12 6720552 6720613 -137065842 + (TA)n Simple_repeat Simple_repeat 1 61 0 521 178 19 9 chr12 6720699 6720806 -137065649 - FLAM_A SINE Alu -15 127 20 1517 166 104 6 chr12 6720818 6721156 -137065299 - Tigger2a DNA MER2_type -63 371 1 284 246 0 0 chr12 6721169 6721226 -137065229 - MIR SINE MIR -9 253 197 22 35 0 0 chr12 6721800 6721829 -137064626 + GC_rich Low_complexity Low_complexity 1 29 0 1648 165 3 14 chr12 6722086 6722383 -137064072 - AluJb SINE Alu -15 297 4 223 323 152 0 chr12 6723108 6723207 -137063248 - MIR SINE MIR -69 193 80 259 205 128 0 chr12 6723414 6723492 -137062963 + L2 LINE L2 3225 3312 -1 185 176 0 0 chr12 6723665 6723699 -137062756 - L3b LINE CR1 -196 1387 1354 * 447 304 213 41 chr12 6723676 6724762 -137061693 + L2 LINE L2 397 1295 -2019 2131 125 13 0 chr12 6724762 6725065 -137061390 + AluSx SINE Alu 1 307 -5 447 304 213 41 chr12 6725065 6725621 -137060834 + L2 LINE L2 1295 2321 -993 22 56 0 0 chr12 6725794 6725830 -137060625 + AT_rich Low_complexity Low_complexity 1 36 0 2339 143 70 64 chr12 6725830 6725921 -137060534 + L1MB2 LINE L1 5652 5741 -430 1881 125 0 45 chr12 6725921 6726208 -137060247 + AluJo SINE Alu 5 278 -34 233 0 62 0 chr12 6726213 6726245 -137060210 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2339 143 70 64 chr12 6726245 6726613 -137059842 + L1MB2 LINE L1 5744 6123 -48 2395 90 10 0 chr12 6726613 6726914 -137059541 + AluSp SINE Alu 1 304 -9 2339 143 70 64 chr12 6726914 6726964 -137059491 + L1MB2 LINE L1 6123 6171 0 660 132 61 0 chr12 6727002 6727116 -137059339 - AluSx SINE Alu -11 299 179 843 85 9 0 chr12 6727116 6727222 -137059233 - AluSx SINE Alu -206 107 1 228 333 31 0 chr12 6727223 6727319 -137059136 + L2 LINE L2 2725 2823 -491 224 341 41 0 chr12 6727541 6727664 -137058791 + L2 LINE L2 3142 3269 -3 434 311 106 6 chr12 6727697 6727858 -137058597 + MIR SINE MIR 36 212 -50 2030 152 10 0 chr12 6728671 6728973 -137057482 - AluJo SINE Alu -7 305 1 2328 58 44 31 chr12 6729693 6729987 -137056468 - AluSg SINE Alu -11 299 2 2438 65 0 29 chr12 6730263 6730572 -137055883 + AluY SINE Alu 1 300 -11 1513 198 88 0 chr12 6730586 6730859 -137055596 + AluJb SINE Alu 1 297 -15 1302 166 60 19 chr12 6730859 6731124 -137055331 - L1MB7 LINE L1 -171 6013 5738 990 137 0 0 chr12 6731135 6731274 -137055181 - AluJb SINE Alu -15 297 159 2614 171 37 27 chr12 6731275 6731569 -137054886 - L1M4 LINE L1 -394 5784 5495 2206 79 0 41 chr12 6731569 6731886 -137054569 - AluY SINE Alu -4 307 4 2614 171 37 27 chr12 6731886 6732104 -137054351 - L1M4 LINE L1 -683 5495 5281 2272 95 24 0 chr12 6732104 6732226 -137054229 + AluSx SINE Alu 1 119 -193 192 77 0 0 chr12 6732226 6732252 -137054203 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2272 95 24 0 chr12 6732252 6732423 -137054032 + AluSx SINE Alu 119 301 -11 2614 171 37 27 chr12 6732423 6732645 -137053810 - L1M4 LINE L1 -897 5281 5050 1175 147 73 10 chr12 6732652 6732856 -137053599 - AluJb SINE Alu -9 303 87 1007 203 66 4 chr12 6732859 6733100 -137053355 - L1M4 LINE L1 -1092 5054 4799 2122 191 32 92 chr12 6734695 6735079 -137051376 - L1M4 LINE L1 -1332 4814 4486 2536 80 0 0 chr12 6735079 6735390 -137051065 + AluY SINE Alu 1 311 0 2122 191 32 92 chr12 6735390 6735681 -137050774 - L1M4 LINE L1 -1660 4486 4179 242 141 51 77 chr12 6735944 6736022 -137050433 + L1MB4 LINE L1 6105 6180 0 872 191 0 13 chr12 6736333 6736485 -137049970 - AluJb SINE Alu -22 290 141 2048 152 0 0 chr12 6736496 6736785 -137049670 - AluSx SINE Alu -14 298 10 2329 97 13 7 chr12 6736913 6737212 -137049243 + AluSx SINE Alu 1 301 -11 1000 151 25 0 chr12 6737063 6737222 -137049233 + AluSg/x SINE Alu 147 309 -1 705 106 0 0 chr12 6737233 6737337 -137049118 + (GGAA)n Simple_repeat Simple_repeat 4 107 0 215 122 0 24 chr12 6737380 6737421 -137049034 + (GAAA)n Simple_repeat Simple_repeat 3 42 0 797 148 7 22 chr12 6737431 6737566 -137048889 + FLAM_C SINE Alu 1 133 0 282 287 107 24 chr12 6737578 6737761 -137048694 + MIR SINE MIR 19 212 -50 244 314 48 37 chr12 6738585 6738773 -137047682 + L2 LINE L2 2864 3053 -219 230 287 149 17 chr12 6738776 6738805 -137047650 - MLT1J LTR MaLR -24 487 463 2070 108 0 0 chr12 6738805 6739082 -137047373 + AluSx SINE Alu 1 277 -35 230 287 149 17 chr12 6739082 6739226 -137047229 - MLT1J LTR MaLR -48 463 291 1014 209 49 85 chr12 6739380 6739622 -137046833 + MER97a DNA MER1_type? 12 261 -633 2235 95 0 0 chr12 6739622 6739929 -137046526 + AluSx SINE Alu 1 307 0 1014 209 49 85 chr12 6739929 6739983 -137046472 + MER97a DNA MER1_type? 261 315 -579 2501 46 13 0 chr12 6739983 6740289 -137046166 + AluY SINE Alu 1 310 -1 1014 209 49 85 chr12 6740289 6740378 -137046077 + MER97a DNA MER1_type? 315 385 -509 2503 180 8 95 chr12 6740414 6740485 -137045970 + MER41D LTR ERV1 1 77 -480 813 153 15 0 chr12 6740485 6740616 -137045839 - FLAM_C SINE Alu 0 133 1 2503 180 8 95 chr12 6740616 6741154 -137045301 + MER41D LTR ERV1 77 557 0 482 199 67 107 chr12 6741163 6741303 -137045152 + MER97c DNA MER1_type? 468 612 -441 1628 118 0 0 chr12 6741303 6741531 -137044924 + AluSx SINE Alu 1 228 -84 482 199 67 107 chr12 6741531 6741682 -137044773 + MER97c DNA MER1_type? 612 1024 -29 372 181 14 0 chr12 6741682 6741754 -137044701 + AluS SINE Alu 1 73 -230 2159 70 46 0 chr12 6741930 6742215 -137044240 + L1PB1 LINE L1 5851 6148 -3 425 267 222 22 chr12 6742233 6742593 -137043862 + Charlie2b DNA MER1_type 312 743 -2039 971 229 84 74 chr12 6742647 6742683 -137043772 + Charlie2b DNA MER1_type 833 867 -1915 2129 98 3 7 chr12 6742683 6742979 -137043476 + AluSg SINE Alu 1 295 -15 971 229 84 74 chr12 6742979 6743144 -137043311 + Charlie2b DNA MER1_type 867 1029 -1753 1906 122 17 7 chr12 6743144 6743440 -137043015 - AluJb SINE Alu -8 304 6 971 229 84 74 chr12 6743440 6743643 -137042812 + Charlie2b DNA MER1_type 1029 1242 -1540 687 241 89 21 chr12 6743732 6743923 -137042532 - MIR SINE MIR -25 237 34 1414 153 0 5 chr12 6744069 6744284 -137042171 + AluJb SINE Alu 85 298 -14 189 0 0 0 chr12 6744285 6744306 -137042149 + (TA)n Simple_repeat Simple_repeat 1 21 0 273 282 89 0 chr12 6744343 6744467 -137041988 + L1MC4 LINE L1 7908 8042 0 2033 117 3 3 chr12 6744633 6744923 -137041532 - AluSx SINE Alu -13 299 10 705 251 16 16 chr12 6745134 6745325 -137041130 - LTR16A LTR ERVL -174 276 86 300 161 0 161 chr12 6745340 6745382 -137041073 - MIR SINE MIR -115 147 126 2046 151 0 0 chr12 6745382 6745694 -137040761 + AluSx SINE Alu 1 312 0 300 161 0 161 chr12 6745694 6745744 -137040711 - MIR SINE MIR -136 126 70 858 261 129 21 chr12 6745769 6746156 -137040299 - MLT1H LTR MaLR -13 536 33 2231 102 0 13 chr12 6746668 6746983 -137039472 - AluY SINE Alu 0 311 1 705 287 61 4 chr12 6747594 6747824 -137038631 + MIR SINE MIR 5 247 -15 1713 156 7 7 chr12 6747833 6748121 -137038334 + AluJo SINE Alu 1 288 -24 198 0 0 0 chr12 6748121 6748143 -137038312 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 2316 87 0 10 chr12 6748457 6748768 -137037687 + AluSc SINE Alu 1 308 -1 296 292 21 0 chr12 6748800 6748896 -137037559 + L2 LINE L2 2962 3059 -213 1011 157 0 0 chr12 6749015 6749174 -137037281 + AluJb SINE Alu 140 298 -14 320 267 103 0 chr12 6749415 6749531 -137036924 - MER117 DNA MER1_type -39 158 31 182 335 112 20 chr12 6749963 6750115 -137036340 - L2 LINE L2 -190 3082 2917 575 281 58 54 chr12 6750313 6750626 -137035829 + L2 LINE L2 2914 3227 -45 504 0 0 0 chr12 6751828 6751884 -137034571 + (CA)n Simple_repeat Simple_repeat 1 56 0 468 192 0 0 chr12 6752553 6752631 -137033824 + FLAM SINE Alu 41 118 -25 30 27 0 0 chr12 6752636 6752673 -137033782 + AT_rich Low_complexity Low_complexity 1 37 0 2347 93 0 0 chr12 6752731 6753041 -137033414 - AluSg SINE Alu 0 310 1 22 35 0 0 chr12 6753436 6753465 -137032990 + GC_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr12 6753918 6753954 -137032501 + GC_rich Low_complexity Low_complexity 1 36 0 463 264 55 60 chr12 6754557 6754758 -137031697 - MER58 DNA MER1_type -2186 234 35 2309 88 0 13 chr12 6757271 6757578 -137028877 + AluSq SINE Alu 1 303 -10 189 178 0 0 chr12 6757940 6757985 -137028470 + (CA)n Simple_repeat Simple_repeat 2 46 0 663 226 43 33 chr12 6758304 6758515 -137027940 + MIR SINE MIR 3 217 -45 2145 113 14 0 chr12 6762224 6762517 -137023938 + AluSx SINE Alu 9 305 -7 512 357 57 37 chr12 6762761 6763317 -137023138 - L2 LINE L2 -2 3270 2712 1319 218 40 58 chr12 6763367 6763813 -137022642 - MLT1C LTR MaLR -29 438 1 1860 168 0 7 chr12 6764069 6764366 -137022089 - AluJo SINE Alu -11 301 7 2350 34 41 3 chr12 6764607 6764898 -137021557 + AluY SINE Alu 1 302 -9 491 284 0 15 chr12 6764946 6765086 -137021369 + MIR SINE MIR 36 171 -67 1825 163 0 7 chr12 6765647 6765954 -137020501 + AluJo SINE Alu 1 305 -7 209 317 0 0 chr12 6767282 6767364 -137019091 + C-rich Low_complexity Low_complexity 1 82 0 213 39 0 0 chr12 6768217 6768243 -137018212 + (CCCCCT)n Simple_repeat Simple_repeat 3 28 0 491 247 29 12 chr12 6768310 6768496 -137017959 + MIR SINE MIR 30 216 -46 552 241 36 100 chr12 6768928 6769075 -137017380 + MIR SINE MIR 55 185 -77 2160 117 0 0 chr12 6769075 6769383 -137017072 + AluSg SINE Alu 1 308 -2 552 241 36 100 chr12 6769383 6769455 -137017000 + MIR SINE MIR 185 260 -2 218 404 94 9 chr12 6770045 6770258 -137016197 - L2 LINE L2 -7 3265 3035 1325 132 147 16 chr12 6771423 6771681 -137014774 + AluJo SINE Alu 1 292 -10 226 0 29 29 chr12 6771986 6772021 -137014434 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr12 6772377 6772406 -137014049 + GC_rich Low_complexity Low_complexity 1 29 0 254 333 0 10 chr12 6772993 6773089 -137013366 + (CTGGGG)n Simple_repeat Simple_repeat 1 95 0 182 114 0 29 chr12 6773813 6773848 -137012607 + (TGGA)n Simple_repeat Simple_repeat 2 35 0 317 287 118 47 chr12 6774181 6774373 -137012082 + MIR SINE MIR 11 216 -46 195 327 39 29 chr12 6774393 6774497 -137011958 - MIR SINE MIR -103 159 55 2294 92 16 0 chr12 6774776 6775080 -137011375 + AluSg SINE Alu 1 309 -1 421 282 72 67 chr12 6775101 6775209 -137011246 - MIR SINE MIR -32 230 119 1985 129 23 13 chr12 6775209 6775518 -137010937 + AluJo SINE Alu 1 312 0 421 282 72 67 chr12 6775518 6775618 -137010837 - MIR SINE MIR -143 119 21 481 299 85 6 chr12 6775691 6775855 -137010600 - MER104 DNA MER2_type 0 180 4 189 299 22 103 chr12 6777470 6777561 -137008894 + L2 LINE L2 3138 3208 -105 1644 167 25 7 chr12 6777561 6777837 -137008618 - AluJb SINE Alu -18 294 14 189 299 22 103 chr12 6777837 6777929 -137008526 + L2 LINE L2 3208 3306 -7 323 268 45 0 chr12 6777994 6778106 -137008349 + L1ME3A LINE L1 6049 6165 -5 214 333 103 0 chr12 6779021 6779108 -137007347 + L3b LINE CR1 1300 1395 -188 1685 116 0 144 chr12 6781630 6781976 -137004479 - AluJo SINE Alu -12 300 5 342 348 78 15 chr12 6782380 6782650 -137003805 - L2 LINE L2 -1 3271 2985 188 231 0 108 chr12 6782776 6782841 -137003614 + L2 LINE L2 3190 3247 -66 234 0 0 0 chr12 6782867 6782893 -137003562 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 315 0 0 0 chr12 6782892 6782927 -137003528 + (CA)n Simple_repeat Simple_repeat 1 35 0 361 230 130 20 chr12 6783201 6783301 -137003154 + L2 LINE L2 3143 3253 -19 492 328 18 23 chr12 6783305 6783476 -137002979 - MIR SINE MIR -49 213 44 329 306 65 102 chr12 6785350 6785595 -137000860 + MIR SINE MIR 10 245 -17 282 244 89 89 chr12 6785799 6785934 -137000521 + MIR SINE MIR 58 192 -70 1941 147 17 0 chr12 6786092 6786391 -137000064 - AluJb SINE Alu -4 308 5 256 246 179 45 chr12 6786393 6786527 -136999928 - MIR3 SINE MIR -55 153 2 384 326 59 0 chr12 6787092 6787227 -136999228 + MIR SINE MIR 118 260 -2 849 209 37 0 chr12 6787228 6787391 -136999064 - AluJo SINE Alu -20 292 124 2222 83 3 0 chr12 6787471 6787761 -136998694 + AluSg SINE Alu 1 291 -19 2146 100 10 0 chr12 6787778 6788069 -136998386 - AluSq SINE Alu -19 294 1 180 0 0 0 chr12 6788486 6788506 -136997949 + (CA)n Simple_repeat Simple_repeat 1 20 0 208 250 0 60 chr12 6788507 6788591 -136997864 + MIR3 SINE MIR 12 90 -118 487 316 26 94 chr12 6789892 6790275 -136996180 - L2 LINE L2 0 3272 2916 214 285 15 66 chr12 6790981 6791118 -136995337 + G-rich Low_complexity Low_complexity 4 133 0 713 184 0 63 chr12 6792640 6792786 -136993669 + FRAM SINE Alu 1 30 -146 2285 72 0 0 chr12 6792786 6793076 -136993379 - AluY SINE Alu -21 290 1 713 184 0 63 chr12 6793076 6793087 -136993368 + FRAM SINE Alu 30 40 0 3328 161 21 81 chr12 6793087 6793201 -136993254 + L1MB8 LINE L1 5288 5407 -771 2638 26 0 7 chr12 6793201 6793510 -136992945 + AluY SINE Alu 1 307 -4 3328 161 21 81 chr12 6793510 6793605 -136992850 + L1MB8 LINE L1 5407 5506 -672 2046 124 3 10 chr12 6793605 6793949 -136992506 + AluSx SINE Alu 1 312 0 3328 161 21 81 chr12 6793949 6794392 -136992063 + L1MB8 LINE L1 5506 5974 -204 2098 107 7 16 chr12 6794392 6794700 -136991755 + AluSx SINE Alu 1 305 -7 3328 161 21 81 chr12 6794700 6794809 -136991646 + L1MB8 LINE L1 5974 5980 -198 1782 158 31 0 chr12 6794809 6795101 -136991354 - AluJb SINE Alu -11 301 1 3328 161 21 81 chr12 6795101 6795289 -136991166 + L1MB8 LINE L1 5980 6178 0 363 342 33 0 chr12 6795658 6795778 -136990677 + MIR3 SINE MIR 82 205 -3 398 235 68 43 chr12 6796248 6796410 -136990045 - Charlie7 DNA MER1_type -7 2605 2440 2393 62 7 0 chr12 6796630 6796939 -136989516 - AluY SINE Alu 0 311 1 2020 82 0 4 chr12 6797039 6797308 -136989147 + AluY SINE Alu 41 308 -3 528 269 69 0 chr12 6799059 6799219 -136987236 - MIR SINE MIR -14 248 78 222 316 30 98 chr12 6799354 6799487 -136986968 + L2 LINE L2 3143 3266 -6 315 0 0 0 chr12 6799488 6799523 -136986932 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 192 245 53 10 chr12 6799949 6800052 -136986403 + MIR3 SINE MIR 78 164 -44 1832 114 70 0 chr12 6800346 6800617 -136985838 + AluSq SINE Alu 5 294 -19 781 203 89 72 chr12 6800734 6800766 -136985689 + MIR SINE MIR 2 32 -230 2144 107 3 3 chr12 6800766 6801066 -136985389 + AluSq SINE Alu 1 300 -13 781 203 89 72 chr12 6801066 6801269 -136985186 + MIR SINE MIR 32 241 -21 4039 149 25 26 chr12 6801297 6801627 -136984828 + L1MB7 LINE L1 5454 5783 -401 2039 129 0 3 chr12 6801627 6801930 -136984525 + AluJo SINE Alu 1 302 -10 4039 149 25 26 chr12 6801930 6802331 -136984124 + L1MB7 LINE L1 5783 6184 0 2243 135 95 32 chr12 6802452 6802811 -136983644 + MSTB LTR MaLR 2 390 -36 2304 104 0 0 chr12 6802811 6803119 -136983336 - AluSx SINE Alu -2 310 3 2243 135 95 32 chr12 6803119 6803159 -136983296 + MSTB LTR MaLR 390 426 0 388 286 21 36 chr12 6804108 6804248 -136982207 + L2 LINE L2 3176 3313 0 351 360 36 7 chr12 6804272 6804411 -136982044 - MIR3 SINE MIR -65 143 1 2134 91 10 19 chr12 6804508 6804817 -136981638 + AluSp SINE Alu 1 306 -7 219 225 338 0 chr12 6805582 6805662 -136980793 - MIR SINE MIR -59 149 43 1784 146 10 20 chr12 6805731 6806033 -136980422 - AluJb SINE Alu -13 299 1 213 39 0 0 chr12 6806186 6806212 -136980243 + (TAA)n Simple_repeat Simple_repeat 2 27 0 26 74 0 0 chr12 6806435 6806489 -136979966 + GC_rich Low_complexity Low_complexity 1 54 0 191 298 35 0 chr12 6807279 6807336 -136979119 - MER5B DNA MER1_type -68 110 52 1520 247 78 38 chr12 6807444 6807524 -136978931 + L1M4 LINE L1 4252 4327 -1819 2374 53 0 23 chr12 6807524 6807827 -136978628 + AluY SINE Alu 1 296 -15 1520 247 78 38 chr12 6807827 6808077 -136978378 + L1M4 LINE L1 4327 4566 -1580 1787 129 24 14 chr12 6808077 6808371 -136978084 - AluJb SINE Alu -15 297 1 1520 247 78 38 chr12 6808371 6808849 -136977606 + L1M4 LINE L1 4566 5093 -1053 2175 60 28 0 chr12 6808920 6809204 -136977251 - AluY SINE Alu -19 292 1 1146 162 56 49 chr12 6809223 6809489 -136976966 + L1M4 LINE L1 5514 5781 -403 347 244 0 26 chr12 6809532 6809569 -136976886 + L1ME3 LINE L1 5648 5684 -487 2329 82 3 0 chr12 6809569 6809873 -136976582 + AluSp SINE Alu 1 305 -8 347 244 0 26 chr12 6809873 6809949 -136976506 + L1ME3 LINE L1 5684 5758 -413 1910 158 3 0 chr12 6810008 6810305 -136976150 + AluJb SINE Alu 2 299 -13 269 170 0 0 chr12 6810309 6810356 -136976099 - MIR SINE MIR 0 262 216 546 141 10 10 chr12 6810381 6810480 -136975975 - MER57A LTR ERV1 0 403 305 736 210 204 41 chr12 6810482 6810796 -136975659 + L1ME3 LINE L1 5798 6162 0 380 264 36 9 chr12 6810796 6810906 -136975549 - MER5B DNA MER1_type -49 129 17 418 214 74 107 chr12 6811113 6811181 -136975274 - MIR SINE MIR -4 258 189 2215 181 2 19 chr12 6811181 6811591 -136974864 - MER57A LTR ERV1 0 403 1 418 214 74 107 chr12 6811591 6811737 -136974718 - MIR SINE MIR -73 189 51 484 240 23 57 chr12 6811829 6811996 -136974459 + MIR SINE MIR 33 199 -48 184 255 0 20 chr12 6812041 6812092 -136974363 - MIR SINE MIR -77 131 82 245 266 49 0 chr12 6812288 6812431 -136974024 + (CCTG)n Simple_repeat Simple_repeat 1 150 0 2382 66 0 7 chr12 6812601 6812906 -136973549 + AluY SINE Alu 1 303 -8 599 275 41 0 chr12 6813189 6813360 -136973095 - MIR SINE MIR -75 187 10 308 93 0 19 chr12 6814583 6814637 -136971818 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 589 266 7 0 chr12 6814643 6814786 -136971669 + MIR SINE MIR 53 196 -66 1623 108 21 4 chr12 6814847 6815088 -136971367 - AluSx SINE Alu -7 305 61 413 107 0 0 chr12 6815137 6815193 -136971262 - AluSx SINE Alu -256 57 2 28 0 0 0 chr12 6815195 6815223 -136971232 + AT_rich Low_complexity Low_complexity 1 28 0 389 313 33 13 chr12 6815224 6815374 -136971081 + MIR SINE MIR 82 234 -28 451 216 120 0 chr12 6815956 6816081 -136970374 + MIR SINE MIR 56 195 -67 186 224 0 0 chr12 6817127 6817176 -136969279 + G-rich Low_complexity Low_complexity 5 53 0 279 295 16 23 chr12 6818244 6818373 -136968082 + CT-rich Low_complexity Low_complexity 4 131 0 271 310 110 14 chr12 6820064 6820209 -136966246 - L2 LINE L2 -173 3099 2941 258 359 35 14 chr12 6820351 6820493 -136965962 - MIR3 SINE MIR -62 146 2 870 225 0 11 chr12 6821326 6821517 -136964938 - AluJo SINE Alu -1 311 123 293 246 0 14 chr12 6821520 6821589 -136964866 + MIR SINE MIR 82 149 -59 421 261 37 22 chr12 6821648 6821782 -136964673 - MIR3 SINE MIR -54 154 19 22 0 0 0 chr12 6822139 6822161 -136964294 + AT_rich Low_complexity Low_complexity 1 22 0 257 0 0 0 chr12 6822197 6822227 -136964228 - MER11C LTR ERVK -1041 30 1 2265 86 0 13 chr12 6822698 6823013 -136963442 + AluY SINE Alu 1 311 0 977 176 32 68 chr12 6823055 6823276 -136963179 - MER20 DNA MER1_type 0 219 7 2015 128 0 28 chr12 6823448 6823769 -136962686 + AluSx SINE Alu 1 312 0 747 264 103 35 chr12 6824101 6824449 -136962006 - LTR33A LTR ERVL -12 511 140 367 282 10 87 chr12 6824663 6824742 -136961713 + L1ME3 LINE L1 5973 6057 -105 2123 126 3 0 chr12 6824742 6825051 -136961404 + AluSg SINE Alu 1 310 0 367 282 10 87 chr12 6825051 6825177 -136961278 + L1ME3 LINE L1 6057 6162 0 521 208 51 97 chr12 6825231 6825447 -136961008 + L1MC5 LINE L1 7697 7902 -59 188 302 94 10 chr12 6825937 6826033 -136960422 + MIR3 SINE MIR 2 105 -103 * 374 309 87 0 chr12 6826030 6826156 -136960299 - L2 LINE L2 0 3272 3136 193 338 39 0 chr12 6826414 6826491 -136959964 + MIR3 SINE MIR 108 187 -21 2568 30 3 0 chr12 6828674 6828972 -136957483 + AluY SINE Alu 1 299 -12 288 0 0 0 chr12 6829654 6829686 -136956769 + (CA)n Simple_repeat Simple_repeat 2 33 0 716 308 5 19 chr12 6829988 6830199 -136956256 - MIR SINE MIR -30 232 25 371 294 117 4 chr12 6830202 6830433 -136956022 - L1ME4a LINE L1 -21 6100 5844 410 240 199 0 chr12 6830465 6830611 -136955844 - MIR3 SINE MIR -14 194 20 1287 224 99 11 chr12 6831974 6832336 -136954119 - L2 LINE L2 0 3313 2920 279 194 0 60 chr12 6832410 6832477 -136953978 + AluJo SINE Alu 85 147 -155 2120 93 0 4 chr12 6832592 6832872 -136953583 + AluSx SINE Alu 24 302 -10 832 176 0 13 chr12 6832883 6833036 -136953419 + FRAM SINE Alu 26 176 0 295 181 28 0 chr12 6833036 6833108 -136953347 + GA-rich Low_complexity Low_complexity 1 74 0 844 212 88 14 chr12 6834746 6834963 -136951492 - MIR SINE MIR -2 260 28 1781 153 3 10 chr12 6835158 6835459 -136950996 - AluJo SINE Alu -13 299 1 1606 175 7 20 chr12 6836149 6836441 -136950014 - AluJo SINE Alu -22 290 3 2138 169 54 16 chr12 6836450 6836823 -136949632 - MLT1B LTR MaLR -3 387 1 786 310 40 23 chr12 6837208 6837605 -136948850 + L1M3b LINE L1 1 404 -5877 500 317 50 19 chr12 6837886 6838145 -136948310 + MLT1L LTR MaLR 322 588 -27 932 197 0 0 chr12 6838430 6838582 -136947873 + MER44D DNA MER2_type 13 164 -541 854 193 46 47 chr12 6838906 6839259 -136947196 + LTR35 LTR ERV1 191 618 0 1832 162 17 5 chr12 6839259 6839775 -136946680 + MER44D DNA MER2_type 160 605 0 1106 261 53 78 chr12 6839793 6840121 -136946334 - L1MC4a LINE L1 -1913 5895 5560 2391 58 0 3 chr12 6840121 6840416 -136946039 - AluY SINE Alu -17 294 1 1106 261 53 78 chr12 6840416 6840670 -136945785 - L1MC4a LINE L1 -2248 5560 5326 1814 135 37 7 chr12 6840670 6840966 -136945489 - AluJb SINE Alu -7 305 1 1106 261 53 78 chr12 6840966 6840987 -136945468 - L1MC4a LINE L1 -2482 5326 5306 261 294 105 46 chr12 6841083 6841367 -136945088 - L1MC4a LINE L1 -1307 4839 4516 2322 92 0 0 chr12 6841367 6841671 -136944784 - AluSx SINE Alu -8 304 1 261 294 105 46 chr12 6841671 6841842 -136944613 - L1MC4a LINE L1 -1630 4516 4357 2384 77 0 0 chr12 6841894 6842205 -136944250 - AluY SINE Alu 0 311 1 804 164 0 14 chr12 6842253 6842393 -136944062 - AluJo SINE Alu -174 138 1 834 150 0 14 chr12 6842441 6842581 -136943874 - AluJo SINE Alu -174 138 1 855 143 0 14 chr12 6842629 6842769 -136943686 - AluJo SINE Alu -174 138 1 320 272 98 0 chr12 6842803 6842895 -136943560 - L1MC4a LINE L1 -2012 4134 4034 213 270 14 27 chr12 6843017 6843091 -136943364 - L2 LINE L2 -742 2572 2500 324 368 95 35 chr12 6843163 6843617 -136942838 - L2 LINE L2 -7 3265 2736 233 193 0 18 chr12 6843635 6843692 -136942763 + L1MC4 LINE L1 6648 6703 -1339 347 247 71 0 chr12 6843697 6843782 -136942673 + L1MC4 LINE L1 6618 6708 -1334 1954 117 0 0 chr12 6843783 6844056 -136942399 - AluSx SINE Alu -39 273 1 467 256 47 0 chr12 6844067 6844196 -136942259 - L1ME3 LINE L1 -30 6132 5998 1938 137 13 0 chr12 6844295 6844595 -136941860 - AluSq SINE Alu -9 304 1 1753 129 47 35 chr12 6844608 6844926 -136941529 - L1MD3 LINE L1 0 7995 7674 1342 177 15 11 chr12 6844926 6845192 -136941263 + AluJb SINE Alu 46 312 0 712 129 39 25 chr12 6845195 6845327 -136941128 - L1ME3 LINE L1 -568 5594 5455 1926 79 0 0 chr12 6845505 6845757 -136940698 - AluY SINE Alu 0 311 60 2643 223 76 19 chr12 6845974 6846169 -136940286 - L1MC/D LINE L1 -743 6198 6016 2040 125 0 22 chr12 6846169 6846305 -136940150 + AluSx SINE Alu 1 138 -174 2259 86 3 10 chr12 6846305 6846619 -136939836 + AluSp SINE Alu 1 312 -1 2040 125 0 22 chr12 6846619 6846801 -136939654 + AluSx SINE Alu 138 312 0 2643 223 76 19 chr12 6846801 6847552 -136938903 - L1MC/D LINE L1 -925 6016 5291 1566 170 6 45 chr12 6847556 6847867 -136938588 - AluJo SINE Alu -13 299 1 317 269 80 70 chr12 6848020 6848421 -136938034 - L1MC5 LINE L1 -62 7899 7495 300 252 84 8 chr12 6848420 6848539 -136937916 - L1MC5 LINE L1 -1201 6760 6633 * 2283 80 0 0 chr12 6848556 6848857 -136937598 - AluSx SINE Alu -11 301 1 472 279 39 0 chr12 6849574 6849703 -136936752 - ERVL LTR ERVL -1271 4493 4360 735 301 57 52 chr12 6849731 6849844 -136936611 - ERVL LTR ERVL -1496 4268 4157 2241 92 0 0 chr12 6849844 6850138 -136936317 - AluSx SINE Alu -12 300 7 735 301 57 52 chr12 6850138 6850519 -136935936 - ERVL LTR ERVL -1607 4157 3772 300 280 0 0 chr12 6850589 6850664 -136935791 - MIR SINE MIR 0 262 188 2042 122 13 0 chr12 6850788 6851130 -136935325 - AluSx SINE Alu 0 312 1 419 219 29 0 chr12 6851138 6851243 -136935212 - L1MC/D LINE L1 -1662 5279 5172 955 182 79 105 chr12 6851263 6851295 -136935160 - L1MCc LINE L1 -4620 2502 2471 1969 105 40 7 chr12 6851295 6851591 -136934864 - AluSq SINE Alu -7 306 1 955 182 79 105 chr12 6851591 6851689 -136934766 - L1MCc LINE L1 -4651 2471 2372 830 161 0 0 chr12 6851689 6851819 -136934636 + FLAM_C SINE Alu 1 130 -3 955 182 79 105 chr12 6851819 6851843 -136934612 - L1MCc LINE L1 -4750 2372 2349 1952 107 71 0 chr12 6851843 6852123 -136934332 + AluSx SINE Alu 1 300 -12 955 182 79 105 chr12 6852123 6852433 -136934022 - L1MCc LINE L1 -4773 2349 2032 186 43 0 0 chr12 6852433 6852456 -136933999 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 955 182 79 105 chr12 6852456 6852596 -136933859 - L1MCc LINE L1 -5090 2032 1681 1176 213 107 80 chr12 6853088 6853360 -136933095 - L1MCc LINE L1 -4852 1570 1307 1879 133 13 32 chr12 6853360 6853676 -136932779 - AluSg SINE Alu 0 310 1 1176 213 107 80 chr12 6853676 6854166 -136932289 - L1MCc LINE L1 -5115 1307 814 1983 124 17 0 chr12 6854286 6854584 -136931871 - AluSx SINE Alu -9 303 1 231 317 33 28 chr12 6854704 6854884 -136931571 - L1MCc LINE L1 -5981 442 262 377 210 48 29 chr12 6854901 6855049 -136931406 - L1MCb LINE L1 -5890 532 52 1591 93 4 9 chr12 6855119 6855344 -136931111 - AluSg/x SINE Alu -16 296 73 1472 211 39 58 chr12 6855344 6855589 -136930866 - L1MCa LINE L1 -1453 4973 4738 2050 119 0 0 chr12 6855589 6855883 -136930572 - AluSx SINE Alu -14 298 5 1472 211 39 58 chr12 6855883 6856069 -136930386 - L1MCa LINE L1 -1688 4738 4550 1899 125 0 7 chr12 6856069 6856358 -136930097 + AluSx SINE Alu 1 287 -25 5471 192 52 39 chr12 6856366 6856711 -136929744 - L1MCa LINE L1 -2438 3988 3649 2092 110 3 3 chr12 6856711 6857012 -136929443 - AluSq SINE Alu -12 301 1 5471 192 52 39 chr12 6857012 6858062 -136928393 - L1MCa LINE L1 -2777 3649 2556 2215 110 0 3 chr12 6858062 6858372 -136928083 - AluSg SINE Alu -1 309 1 5471 192 52 39 chr12 6858372 6859000 -136927455 - L1MCa LINE L1 -3870 2556 1937 982 105 0 0 chr12 6859000 6859133 -136927322 + AluSq/x SINE Alu 1 133 -179 1916 157 0 3 chr12 6859145 6859458 -136926997 + AluSx SINE Alu 1 312 0 238 364 178 0 chr12 6859557 6859675 -136926780 - L2 LINE L2 0 3272 3134 407 341 116 26 chr12 6859767 6860269 -136926186 + L2 LINE L2 863 1409 -1905 425 167 3 0 chr12 6860283 6860367 -136926088 + L1ME2 LINE L1 5459 5543 -621 3090 146 62 22 chr12 6860371 6860905 -136925550 - MER21A LTR ERV1 0 931 377 1478 107 95 8 chr12 6860911 6861154 -136925301 - MER21A LTR ERV1 -667 264 1 1662 168 35 17 chr12 6861157 6861502 -136924953 + L1ME2 LINE L1 5546 5896 -268 1756 127 10 45 chr12 6861510 6861824 -136924631 + AluSq SINE Alu 1 303 -10 645 168 44 0 chr12 6861833 6861946 -136924509 - L1ME LINE L1 -421 5700 5583 211 333 55 36 chr12 6862047 6862212 -136924243 + L2 LINE L2 3105 3272 -41 297 218 0 0 chr12 6862464 6862519 -136923936 - MER91 DNA MER1_type -7 189 135 182 345 18 35 chr12 6862621 6862734 -136923721 + L2 LINE L2 2981 3091 -181 1761 141 17 7 chr12 6862790 6863087 -136923368 + AluJb SINE Alu 1 300 -12 2394 68 7 0 chr12 6863155 6863463 -136922992 - AluSg SINE Alu 0 310 1 217 250 39 0 chr12 6863483 6863535 -136922920 + L2 LINE L2 3258 3311 -2 241 326 45 11 chr12 6863539 6863628 -136922827 + MIR3 SINE MIR 102 193 -15 2088 104 0 3 chr12 6864307 6864626 -136921829 - AluSx SINE Alu 0 312 1 258 32 0 0 chr12 6864638 6864669 -136921786 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 1269 121 0 0 chr12 6864669 6864851 -136921604 - AluSg/x SINE Alu -2 310 129 2294 82 26 0 chr12 6864851 6865155 -136921300 - AluSx SINE Alu 0 312 1 667 162 8 17 chr12 6865182 6865299 -136921156 + FLAM_C SINE Alu 3 118 -25 2028 100 3 14 chr12 6865305 6865621 -136920834 - AluSg SINE Alu 0 310 1 2315 93 0 3 chr12 6865674 6865984 -136920471 - AluSc SINE Alu 0 309 1 3157 117 7 7 chr12 6866215 6866678 -136919777 - L1PB4 LINE L1 0 6156 5694 25 0 0 0 chr12 6867447 6867472 -136918983 + AT_rich Low_complexity Low_complexity 1 25 0 386 274 46 39 chr12 6867735 6867888 -136918567 + MLT2E LTR ERVL 1 154 -474 637 273 47 13 chr12 6867907 6868302 -136918153 + MLT2F LTR ERVL 213 661 -2 25 0 0 0 chr12 6868450 6868475 -136917980 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr12 6868508 6868539 -136917916 + AT_rich Low_complexity Low_complexity 1 31 0 1893 148 0 3 chr12 6868539 6868844 -136917611 + AluJb SINE Alu 2 305 -7 1598 146 0 43 chr12 6869520 6869801 -136916654 + AluSx SINE Alu 1 269 -43 230 121 0 0 chr12 6869801 6869834 -136916621 + AluSx SINE Alu 249 281 -20 186 0 88 0 chr12 6869838 6869872 -136916583 + A-rich Low_complexity Low_complexity 2 38 0 1810 137 16 22 chr12 6870307 6870621 -136915834 + AluJb SINE Alu 1 312 0 2126 100 3 7 chr12 6870646 6870945 -136915510 + AluSq SINE Alu 1 298 -15 4329 177 27 44 chr12 6870945 6871010 -136915445 + L1MB7 LINE L1 4362 4427 -1753 2078 123 0 3 chr12 6871010 6871311 -136915144 + AluSx SINE Alu 1 300 -12 4329 177 27 44 chr12 6871311 6872033 -136914422 + L1MB7 LINE L1 4427 5159 -1021 2363 51 7 0 chr12 6872033 6872328 -136914127 - AluY SINE Alu -14 297 1 4329 177 27 44 chr12 6872328 6872401 -136914054 + L1MB7 LINE L1 5159 5232 -948 2188 63 0 48 chr12 6872401 6872716 -136913739 - AluY SINE Alu -11 300 1 4329 177 27 44 chr12 6872716 6873001 -136913454 + L1MB7 LINE L1 5232 5488 -692 304 193 91 0 chr12 6873008 6873096 -136913359 + L1MB7 LINE L1 6073 6168 -16 781 315 91 26 chr12 6873533 6874102 -136912353 + L1MC4a LINE L1 5347 5952 -1856 1617 189 10 0 chr12 6874219 6874520 -136911935 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr12 6874935 6874957 -136911498 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 0 chr12 6874963 6875276 -136911179 + AluSc SINE Alu 1 313 0 2085 132 3 0 chr12 6875276 6875580 -136910875 + AluSq SINE Alu 1 305 -8 1837 136 34 0 chr12 6875610 6875905 -136910550 + AluSx SINE Alu 8 312 0 360 130 91 26 chr12 6876302 6876379 -136910076 - L1ME3A LINE L1 -208 5962 5881 480 101 56 11 chr12 6876427 6876516 -136909939 - L1MB4 LINE L1 -1 6179 6087 357 244 16 32 chr12 6876517 6876640 -136909815 - L1ME3A LINE L1 -296 5874 5754 638 174 39 0 chr12 6876643 6876798 -136909657 + CT-rich Low_complexity Low_complexity 3 163 0 1583 138 0 0 chr12 6876799 6877039 -136909416 - AluSx SINE Alu -64 248 9 180 0 0 0 chr12 6877043 6877063 -136909392 + (CTTG)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr12 6877214 6877243 -136909212 + AT_rich Low_complexity Low_complexity 1 29 0 371 155 184 19 chr12 6877440 6877543 -136908912 + MIR SINE MIR 31 150 -58 476 219 102 71 chr12 6877755 6877951 -136908504 + MER63A DNA MER1_type 2 203 -7 1857 118 0 70 chr12 6878197 6878336 -136908119 + AluJb SINE Alu 7 113 -199 2176 89 3 0 chr12 6878336 6878629 -136907826 + AluSp SINE Alu 2 295 -18 1857 118 0 70 chr12 6878629 6878804 -136907651 + AluJb SINE Alu 113 299 -13 2216 98 3 0 chr12 6878830 6879127 -136907328 + AluSx SINE Alu 5 302 -10 257 372 92 9 chr12 6879380 6879598 -136906857 - MIR SINE MIR -6 256 21 1444 114 72 50 chr12 6879938 6880224 -136906231 + AluJo SINE Alu 14 305 0 2374 71 0 3 chr12 6880226 6880536 -136905919 + AluY SINE Alu 1 309 -2 577 308 18 27 chr12 6880537 6880758 -136905697 + L1MEd LINE L1 473 691 -5428 691 126 10 0 chr12 6880826 6880929 -136905526 - FLAM_C SINE Alu -32 111 8 384 229 120 17 chr12 6880997 6881172 -136905283 + Charlie7 DNA MER1_type 2205 2397 -215 646 144 10 0 chr12 6881290 6881387 -136905068 - AluJ/FLAM SINE Alu -213 99 2 26 30 0 0 chr12 6881488 6881521 -136904934 + AT_rich Low_complexity Low_complexity 1 33 0 821 235 105 25 chr12 6882291 6882380 -136904075 + L1MEd LINE L1 2661 2742 -3387 1796 199 84 31 chr12 6882380 6882858 -136903597 - MLT1D LTR MaLR 0 505 3 821 235 105 25 chr12 6882858 6883160 -136903295 + L1MEd LINE L1 2742 3083 -3046 1957 122 7 0 chr12 6883161 6883447 -136903008 + AluSx SINE Alu 2 289 -23 21 0 0 0 chr12 6883538 6883559 -136902896 + AT_rich Low_complexity Low_complexity 1 21 0 1759 148 0 19 chr12 6883796 6884106 -136902349 - AluJo SINE Alu -8 304 1 389 316 19 52 chr12 6884127 6884282 -136902173 + L2 LINE L2 3121 3270 -2 2148 114 0 9 chr12 6885219 6885534 -136900921 + AluSx SINE Alu 1 312 0 985 132 0 0 chr12 6885751 6885887 -136900568 + AluSq/x SINE Alu 1 136 -177 1593 165 110 0 chr12 6885887 6886159 -136900296 + AluSg SINE Alu 1 302 -8 814 220 129 4 chr12 6887366 6887598 -136898857 + MER46C DNA MER2_type 78 338 0 872 204 0 0 chr12 6889349 6889501 -136896954 - FRAM SINE Alu -11 165 14 1284 156 66 80 chr12 6889542 6889825 -136896630 + AluJb SINE Alu 3 282 -26 216 0 0 0 chr12 6889825 6889849 -136896606 + (CA)n Simple_repeat Simple_repeat 1 24 0 1975 141 0 33 chr12 6889859 6890165 -136896290 + AluJb SINE Alu 9 304 -8 216 0 0 0 chr12 6890668 6890692 -136895763 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1886 39 0 0 chr12 6890695 6890925 -136895530 - L1PA5 LINE L1 -13 6141 5912 2186 94 7 3 chr12 6891547 6891834 -136894621 + AluSg SINE Alu 16 303 -7 561 163 71 21 chr12 6891876 6891990 -136894465 - L1MB7 LINE L1 -78 6106 5999 213 39 0 0 chr12 6891990 6892016 -136894439 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 561 163 71 21 chr12 6892016 6892034 -136894421 - L1MB7 LINE L1 -185 5999 5983 2155 138 0 3 chr12 6892034 6892345 -136894110 - AluJb SINE Alu -2 310 1 1018 91 0 0 chr12 6892352 6892484 -136893971 - AluSg/x SINE Alu 0 309 178 335 239 60 0 chr12 6892488 6892605 -136893850 + L1ME3A LINE L1 6043 6166 -4 2322 113 0 3 chr12 6892617 6892926 -136893529 + AluSq SINE Alu 1 308 -5 2371 101 10 0 chr12 6896784 6897091 -136889364 + AluSq SINE Alu 1 310 -3 2212 122 3 0 chr12 6897235 6897539 -136888916 + AluSx SINE Alu 1 305 -7 504 214 24 71 chr12 6898112 6898280 -136888175 - L1MC4 LINE L1 -16 8026 7867 632 229 13 38 chr12 6898432 6898589 -136887866 + MER97b DNA MER1_type? 27 179 -874 653 119 9 37 chr12 6898701 6898810 -136887645 + FLAM_A SINE Alu 4 109 -33 2270 107 10 0 chr12 6898812 6899103 -136887352 - AluSx SINE Alu -18 294 1 650 242 96 42 chr12 6899142 6899402 -136887053 - L1MC4 LINE L1 -313 7729 7456 2099 88 4 0 chr12 6899412 6899673 -136886782 - AluSp SINE Alu -13 300 39 2474 89 6 10 chr12 6899686 6900000 -136886455 - AluSq SINE Alu 0 313 1 235 224 0 0 chr12 6900073 6900122 -136886333 - MIR SINE MIR -157 105 57 357 222 70 105 chr12 6901118 6901153 -136885302 - MER97b DNA MER1_type? -886 167 132 2276 87 35 0 chr12 6901153 6901439 -136885016 + AluSg SINE Alu 1 296 -14 357 222 70 105 chr12 6901439 6901574 -136884881 - MER97b DNA MER1_type? -921 132 3 222 264 85 28 chr12 6902209 6902315 -136884140 - L2 LINE L2 -39 3233 3122 339 298 193 6 chr12 6902506 6902687 -136883768 - MIR SINE MIR -13 249 35 351 0 0 0 chr12 6902772 6902811 -136883644 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2209 123 3 0 chr12 6902813 6903113 -136883342 - AluSx SINE Alu -11 301 1 2008 136 0 4 chr12 6903293 6903608 -136882847 - AluSx SINE Alu 0 316 3 180 0 0 0 chr12 6907854 6907874 -136878581 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 366 107 0 0 chr12 6908402 6908458 -136877997 + (TA)n Simple_repeat Simple_repeat 1 56 0 303 28 0 0 chr12 6908458 6908494 -136877961 + (TG)n Simple_repeat Simple_repeat 2 37 0 893 128 0 0 chr12 6909399 6909532 -136876923 + FLAM_A SINE Alu 1 133 0 2628 65 8 0 chr12 6909826 6910178 -136876277 + THE1A LTR MaLR 1 355 0 2890 48 0 3 chr12 6910178 6910549 -136875906 + THE1A-int LTR MaLR 1 370 -1210 4842 114 3 1 chr12 6910560 6911244 -136875211 + THE1A-int LTR MaLR 482 1166 -414 240 287 201 12 chr12 6914269 6914433 -136872022 + L2 LINE L2 2335 2529 -785 1410 188 61 37 chr12 6914487 6914543 -136871912 - HsTC2 DNA Tc2 -22 1876 1823 2283 97 7 3 chr12 6914543 6914841 -136871614 + AluSx SINE Alu 1 299 -13 1410 188 61 37 chr12 6914841 6915194 -136871261 - HsTC2 DNA Tc2 -75 1823 1281 1008 169 5 31 chr12 6915565 6915745 -136870710 + AluJo SINE Alu 123 299 -13 2109 132 26 0 chr12 6915745 6916049 -136870406 + AluSx SINE Alu 1 312 0 1008 169 5 31 chr12 6916049 6916063 -136870392 + AluJo SINE Alu 299 312 0 1911 143 0 28 chr12 6916164 6916451 -136870004 + AluJb SINE Alu 11 289 -23 2646 45 0 13 chr12 6916470 6916778 -136869677 - AluY SINE Alu -7 304 1 2602 177 73 90 chr12 6916778 6917559 -136868896 - L1MD2 LINE L1 -10 6349 5582 571 146 0 0 chr12 6917564 6917646 -136868809 - FLAM_A SINE Alu -41 101 20 604 181 39 19 chr12 6917664 6917819 -136868636 - L1MD2 LINE L1 -879 5480 5323 7546 45 3 200 chr12 6917819 6919189 -136867266 - SVA Other Other -4 1382 283 1286 103 6 0 chr12 6919189 6919354 -136867101 - AluSq SINE Alu -134 179 14 325 296 35 52 chr12 6919392 6919507 -136866948 - HAL1 LINE L1 -1230 1277 1165 547 317 27 0 chr12 6919507 6919693 -136866762 - L1MEd LINE L1 -5368 751 561 615 177 54 20 chr12 6920164 6920311 -136866144 + L1M4 LINE L1 4695 4846 -1300 2464 77 0 3 chr12 6920320 6920619 -136865836 - AluSc SINE Alu -11 298 1 26 0 0 0 chr12 6923902 6923928 -136862527 + AT_rich Low_complexity Low_complexity 1 26 0 2298 73 45 7 chr12 6924087 6924376 -136862079 - AluSg SINE Alu -10 300 1 21 36 0 0 chr12 6924805 6924833 -136861622 + AT_rich Low_complexity Low_complexity 1 28 0 2310 92 3 3 chr12 6925217 6925510 -136860945 + AluSg SINE Alu 1 293 -17 1637 202 14 10 chr12 6925660 6925957 -136860498 + AluJo SINE Alu 1 298 -14 717 121 44 117 chr12 6925966 6926099 -136860356 + L1MB8 LINE L1 5823 5964 -220 2095 114 3 24 chr12 6926099 6926396 -136860059 + AluSx SINE Alu 18 308 -4 717 121 44 117 chr12 6926396 6926417 -136860038 + L1MB8 LINE L1 5964 5985 -199 1676 148 0 0 chr12 6926417 6926647 -136859808 + AluSx SINE Alu 1 230 -82 717 121 44 117 chr12 6926647 6926775 -136859680 + L1MB8 LINE L1 5985 6067 -117 2233 106 0 7 chr12 6926816 6927108 -136859347 + AluSc SINE Alu 1 290 -19 1361 136 37 0 chr12 6927108 6927381 -136859074 + L1MA8 LINE L1 6009 6291 0 512 193 18 0 chr12 6927390 6927504 -136858951 + L1MB7 LINE L1 6050 6165 -19 183 80 0 0 chr12 6927681 6927706 -136858749 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 648 170 36 0 chr12 6927706 6927818 -136858637 - AluJb SINE Alu -195 117 2 305 240 20 137 chr12 6927819 6927887 -136858568 - HAL1 LINE L1 -139 2368 2294 1896 139 3 58 chr12 6927887 6928027 -136858428 - AluJb SINE Alu 0 312 166 2492 81 0 7 chr12 6928027 6928334 -136858121 - AluSg SINE Alu -5 305 1 1896 139 3 58 chr12 6928334 6928523 -136857932 - AluJb SINE Alu -146 166 1 2138 130 0 3 chr12 6928533 6928858 -136857597 - AluSx SINE Alu 0 324 1 305 240 20 137 chr12 6928858 6928923 -136857532 - HAL1 LINE L1 -223 2284 2240 * 475 322 99 5 chr12 6928922 6929124 -136857331 + L1 LINE L1 3893 4113 -2033 1462 80 9 38 chr12 6929124 6929300 -136857155 - AluSg/x SINE Alu -1 309 138 2195 91 0 18 chr12 6929300 6929613 -136856842 - AluSq SINE Alu 0 313 9 1462 80 9 38 chr12 6929613 6929649 -136856806 - AluSg/x SINE Alu -172 138 103 1678 128 6 106 chr12 6929701 6930030 -136856425 - AluJo SINE Alu -10 302 7 2355 97 0 0 chr12 6930127 6930426 -136856029 + AluY SINE Alu 1 299 -12 1614 116 16 0 chr12 6930432 6930682 -136855773 - L1M4 LINE L1 -382 5802 5549 2506 65 0 0 chr12 6930693 6930985 -136855470 - AluY SINE Alu -19 292 1 225 254 162 81 chr12 6931102 6931275 -136855180 + L2 LINE L2 2897 3083 -189 1999 156 0 22 chr12 6931372 6931687 -136854768 - AluSx SINE Alu -4 308 1 186 43 0 0 chr12 6931748 6931771 -136854684 + (A)n Simple_repeat Simple_repeat 1 23 0 837 293 52 40 chr12 6931872 6932008 -136854447 + HERV16 LTR ERVL 2404 2537 -2459 1999 150 3 16 chr12 6932008 6932322 -136854133 - AluJb SINE Alu -1 311 2 2322 102 10 0 chr12 6932330 6932634 -136853821 - AluSp SINE Alu -6 307 1 837 293 52 40 chr12 6932634 6932812 -136853643 + HERV16 LTR ERVL 2543 2731 -2265 2253 97 3 13 chr12 6932835 6933135 -136853320 - AluSg SINE Alu -4 306 10 1042 143 104 137 chr12 6933654 6933961 -136852494 - AluJo SINE Alu -5 297 1 1396 160 15 108 chr12 6933972 6934173 -136852282 - AluJo SINE Alu 0 302 143 2100 100 16 48 chr12 6934173 6934483 -136851972 - AluY SINE Alu -11 300 1 1396 160 15 108 chr12 6934483 6934613 -136851842 - AluJo SINE Alu -159 143 2 21 0 0 0 chr12 6934621 6934642 -136851813 + AT_rich Low_complexity Low_complexity 1 21 0 347 250 24 12 chr12 6935591 6935675 -136850780 + MIR SINE MIR 1 85 -177 377 309 7 33 chr12 6936564 6936716 -136849739 - MIR SINE MIR -80 182 35 305 274 92 30 chr12 6937393 6937557 -136848898 + MIR SINE MIR 87 260 -2 587 164 141 16 chr12 6938817 6938945 -136847510 + MIR SINE MIR 9 152 -110 2326 114 0 7 chr12 6939061 6939368 -136847087 - AluSx SINE Alu -2 310 6 1794 164 0 23 chr12 6939419 6939718 -136846737 - AluJb SINE Alu 0 312 21 641 179 0 0 chr12 6939718 6939824 -136846631 - AluJb SINE Alu -59 253 148 241 179 0 0 chr12 6939824 6939863 -136846592 - AluJb SINE Alu -261 39 1 466 101 25 25 chr12 6939863 6939942 -136846513 - Tigger3(Golem) DNA MER2_type -674 2355 2277 * 518 219 29 0 chr12 6939933 6940038 -136846417 - Tigger3(Golem) DNA MER2_type -2921 108 1 1958 93 100 3 chr12 6940314 6940625 -136845830 - L1PA10 LINE L1 -10 6158 5818 2338 97 3 0 chr12 6940630 6940930 -136845525 - AluSg SINE Alu -9 301 1 1687 145 86 21 chr12 6940932 6941222 -136845233 - AluJb SINE Alu -3 309 1 466 250 103 51 chr12 6941313 6941469 -136844986 - L2 LINE L2 -1 3312 3149 2348 147 47 33 chr12 6941472 6941626 -136844829 - MER44D DNA MER2_type -1892 595 445 2233 89 10 3 chr12 6941626 6941917 -136844538 - AluSc SINE Alu -16 293 1 2348 147 47 33 chr12 6941917 6942212 -136844243 - MER44D DNA MER2_type -2042 445 85 1143 173 0 5 chr12 6942213 6942398 -136844057 - AluJb SINE Alu -1 311 128 2119 126 0 13 chr12 6942403 6942705 -136843750 - AluSx SINE Alu -14 298 1 516 194 0 10 chr12 6942705 6942803 -136843652 - MER44D DNA MER2_type -608 97 1 2509 233 190 113 chr12 6942825 6942852 -136843603 - L2 LINE L2 -139 3174 3151 2030 149 3 7 chr12 6942852 6943154 -136843301 + AluJb SINE Alu 1 301 -11 485 181 133 0 chr12 6943159 6943264 -136843191 + FLAM_A SINE Alu 2 120 -13 2509 233 190 113 chr12 6943264 6943546 -136842909 - L2 LINE L2 -165 3148 2889 464 216 116 88 chr12 6943546 6943727 -136842728 + MER5A DNA MER1_type 4 189 0 2509 233 190 113 chr12 6943727 6944070 -136842385 - L2 LINE L2 -424 2889 2574 1071 116 23 52 chr12 6944070 6944242 -136842213 - AluSg/x SINE Alu -13 299 133 1490 116 209 8 chr12 6944242 6944501 -136841954 - AluY SINE Alu 0 311 1 2509 233 190 113 chr12 6944501 6945595 -136840860 - L2 LINE L2 -738 2575 1095 1027 133 20 0 chr12 6945682 6945833 -136840622 + FRAM SINE Alu 1 154 -22 2047 95 24 44 chr12 6945846 6946168 -136840287 - AluSg SINE Alu 0 316 1 1158 258 52 27 chr12 6946288 6946503 -136839952 - MSTD LTR MaLR -15 381 173 2376 71 0 4 chr12 6946503 6946783 -136839672 + AluSg SINE Alu 1 279 -31 1158 258 52 27 chr12 6946783 6946804 -136839651 - MSTD LTR MaLR -223 173 154 1493 94 0 5 chr12 6946804 6946996 -136839459 + AluSg/x SINE Alu 94 284 -25 1158 258 52 27 chr12 6946996 6947127 -136839328 - MSTD LTR MaLR -242 154 4 570 41 0 0 chr12 6947184 6947257 -136839198 + (TA)n Simple_repeat Simple_repeat 2 74 0 1121 159 56 24 chr12 6947260 6947401 -136839054 - Tigger2 DNA MER2_type -3 2715 2580 195 42 0 0 chr12 6947401 6947425 -136839030 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2040 133 4 0 chr12 6947426 6947705 -136838750 - AluSx SINE Alu -32 280 1 1121 159 56 24 chr12 6947705 6947812 -136838643 - Tigger2 DNA MER2_type -137 2581 2457 3089 131 8 82 chr12 6947855 6948086 -136838369 - Tigger2 DNA MER2_type -1974 744 497 2160 102 7 7 chr12 6948086 6948379 -136838076 - AluSq SINE Alu -20 293 1 3089 131 8 82 chr12 6948379 6948570 -136837885 - Tigger2 DNA MER2_type -2221 497 293 1815 153 6 80 chr12 6948570 6948896 -136837559 + AluSx SINE Alu 1 302 -10 3089 131 8 82 chr12 6948896 6948973 -136837482 - Tigger2 DNA MER2_type -2425 293 212 1802 191 10 0 chr12 6948973 6949271 -136837184 - AluJb SINE Alu -11 301 1 3089 131 8 82 chr12 6949271 6949319 -136837136 - Tigger2 DNA MER2_type -2506 212 245 2458 57 0 10 chr12 6949319 6949618 -136836837 + AluY SINE Alu 1 296 -15 3089 131 8 82 chr12 6949618 6949700 -136836755 - Tigger2 DNA MER2_type -2472 246 159 1108 185 0 0 chr12 6949704 6949877 -136836578 + FRAM SINE Alu 1 165 -11 378 218 13 0 chr12 6949877 6949955 -136836500 - Tigger2 DNA MER2_type -2639 79 1 772 266 21 0 chr12 6949955 6950147 -136836308 + L1MC4 LINE L1 6689 6884 -1158 733 161 0 0 chr12 6950147 6950277 -136836178 - FLAM_C SINE Alu 0 143 14 266 178 0 0 chr12 6950324 6950369 -136836086 + FLAM_A SINE Alu 1 45 -88 2240 124 26 0 chr12 6950369 6950708 -136835747 - LTR10D LTR ERV1 0 513 166 1226 159 29 0 chr12 6950715 6950954 -136835501 - LTR10D LTR ERV1 -265 248 3 512 158 10 0 chr12 6950954 6951055 -136835400 + FLAM_A SINE Alu 39 140 -2 1814 132 33 50 chr12 6951062 6951365 -136835090 + AluJb SINE Alu 1 298 -14 3117 175 92 7 chr12 6951365 6952086 -136834369 + L1MC4a LINE L1 6838 7619 -189 2350 90 3 16 chr12 6952265 6952575 -136833880 - AluSq SINE Alu -7 306 1 236 51 0 51 chr12 6953180 6953219 -136833236 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2174 120 13 10 chr12 6954334 6954642 -136831813 - AluSq SINE Alu -4 309 1 2194 116 0 7 chr12 6954713 6955006 -136831449 + AluSq SINE Alu 1 291 -22 2431 48 41 10 chr12 6955013 6955307 -136831148 + AluY SINE Alu 1 303 -8 210 143 0 0 chr12 6955307 6955342 -136831113 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 3510 241 69 19 chr12 6955342 6956274 -136830181 - L2 LINE L2 -248 3065 2069 1727 118 111 8 chr12 6956274 6956536 -136829919 + AluJb SINE Alu 2 290 -22 3510 241 69 19 chr12 6956536 6956723 -136829732 - L2 LINE L2 -1244 2069 1893 2339 105 0 3 chr12 6956723 6957028 -136829427 - AluSg SINE Alu -6 304 1 1855 157 42 0 chr12 6958208 6958494 -136827961 - AluJo SINE Alu -14 298 1 2313 121 0 13 chr12 6958923 6959229 -136827226 + AluSx SINE Alu 1 302 -10 2401 82 0 0 chr12 6959238 6959531 -136826924 + AluSg SINE Alu 4 296 -14 370 263 40 66 chr12 6961261 6961413 -136825042 + MIR3 SINE MIR 77 206 -2 2393 104 0 13 chr12 6961518 6961834 -136824621 - AluSx SINE Alu 0 312 1 2534 44 0 17 chr12 6961906 6962203 -136824252 - AluY SINE Alu -19 292 1 631 126 19 80 chr12 6962370 6962566 -136823889 - FRAM SINE Alu -18 158 1 319 248 67 29 chr12 6962605 6962710 -136823745 - L1MC4a LINE L1 -1839 5969 5861 1125 149 29 11 chr12 6962721 6962896 -136823559 + AluSg/x SINE Alu 118 295 -15 1892 176 0 23 chr12 6962905 6963206 -136823249 + AluSx SINE Alu 1 294 -18 231 125 0 0 chr12 6963206 6963246 -136823209 + (TA)n Simple_repeat Simple_repeat 1 40 0 879 187 0 32 chr12 6963262 6963417 -136823038 - AluJ SINE Alu -23 289 140 514 174 10 10 chr12 6963481 6963579 -136822876 - AluJ SINE Alu -149 163 66 1714 181 13 25 chr12 6964413 6964727 -136821728 + AluJb SINE Alu 1 310 -2 809 154 0 49 chr12 6965104 6965247 -136821208 - AluJ SINE Alu -176 136 1 1875 146 13 17 chr12 6965317 6965618 -136820837 + AluJo SINE Alu 1 300 -12 2307 114 0 3 chr12 6966403 6966709 -136819746 - AluSg SINE Alu -4 306 2 756 246 78 8 chr12 6966917 6967161 -136819294 - MIR SINE MIR 0 262 2 336 270 30 10 chr12 6967202 6967302 -136819153 - L2 LINE L2 -218 3054 2953 2305 93 3 29 chr12 6967372 6967685 -136818770 + AluSx SINE Alu 1 305 -7 503 282 109 15 chr12 6972090 6972292 -136814163 + MIR SINE MIR 23 243 -19 1158 141 39 0 chr12 6973202 6973408 -136813047 - L1MC1 LINE L1 -1 6332 6119 1160 153 124 0 chr12 6973413 6973654 -136812801 - L1MC1 LINE L1 -252 6081 5811 2275 95 7 0 chr12 6974537 6974833 -136811622 + AluSp SINE Alu 1 298 -15 1003 213 19 5 chr12 6975208 6975424 -136811031 + MER20 DNA MER1_type 1 219 0 303 296 80 45 chr12 6982076 6982197 -136804258 + MIR SINE MIR 47 179 -83 1978 124 3 7 chr12 6982197 6982479 -136803976 + AluSx SINE Alu 15 295 -17 303 296 80 45 chr12 6982479 6982556 -136803899 + MIR SINE MIR 179 252 -10 1538 115 74 0 chr12 6983822 6984039 -136802416 + AluSg SINE Alu 1 233 -77 271 253 36 12 chr12 6985262 6985345 -136801110 - HsTC2 DNA Tc2 -1813 85 1 3460 91 13 58 chr12 6986278 6986698 -136799757 + MER1A DNA MER1_type 1 392 -2308 2409 84 7 0 chr12 6986698 6986997 -136799458 + AluSp SINE Alu 1 301 -12 3460 91 13 58 chr12 6986997 6987128 -136799327 + MER1A DNA MER1_type 392 527 0 2202 113 3 10 chr12 6987179 6987480 -136798975 - AluSx SINE Alu -13 299 1 2507 48 0 3 chr12 6987944 6988266 -136798189 + AluY SINE Alu 1 311 0 4270 158 5 30 chr12 6988271 6988426 -136798029 + MER44D DNA MER2_type 7 164 -2323 2524 53 0 10 chr12 6988426 6988726 -136797729 + AluY SINE Alu 2 298 -13 4270 158 5 30 chr12 6988726 6989313 -136797142 + MER44D DNA MER2_type 164 603 -2 2544 48 0 19 chr12 6989491 6989800 -136796655 - AluY SINE Alu -8 303 1 431 227 21 50 chr12 6989998 6990139 -136796316 - MIR SINE MIR 0 262 126 1448 175 90 11 chr12 6990139 6990437 -136796018 + AluJo SINE Alu 1 312 0 1219 182 5 23 chr12 6990446 6990660 -136795795 + AluJo SINE Alu 1 210 -102 281 229 24 0 chr12 6990715 6990798 -136795657 + GA-rich Low_complexity Low_complexity 4 88 0 305 298 0 19 chr12 6990818 6990922 -136795533 - MIR SINE MIR -141 121 20 249 200 46 15 chr12 6992509 6992574 -136793881 + GA-rich Low_complexity Low_complexity 5 71 0 1130 148 79 30 chr12 6996582 6996785 -136789670 + AluJb SINE Alu 72 284 -28 23 68 0 0 chr12 6998525 6998569 -136787886 + GC_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr12 6998859 6998887 -136787568 + GC_rich Low_complexity Low_complexity 1 28 0 2294 81 7 10 chr12 6999356 6999652 -136786803 - AluSx SINE Alu -17 295 1 2226 131 7 0 chr12 7000872 7001177 -136785278 + AluSx SINE Alu 1 307 -5 2230 103 27 0 chr12 7001284 7001576 -136784879 - AluSx SINE Alu -12 300 1 1068 119 0 7 chr12 7001612 7001763 -136784692 - AluJo SINE Alu -3 309 160 580 162 0 36 chr12 7001764 7001875 -136784580 - AluJo SINE Alu -204 108 2 1607 124 142 47 chr12 7001968 7002136 -136784319 - AluSx SINE Alu -10 302 97 2533 61 0 3 chr12 7002136 7002430 -136784025 - AluY SINE Alu -18 293 1 1607 124 142 47 chr12 7002430 7002535 -136783920 - AluSx SINE Alu -215 97 3 294 233 213 64 chr12 7004360 7004562 -136781893 - MIR SINE MIR -24 238 7 2292 93 3 10 chr12 7005000 7005300 -136781155 - AluSx SINE Alu -12 300 3 1236 99 0 6 chr12 7007143 7007305 -136779150 + AluSg/x SINE Alu 138 298 -12 2318 76 7 7 chr12 7007450 7007740 -136778715 - AluSx SINE Alu -22 290 1 1873 131 6 85 chr12 7008164 7008357 -136778098 - AluJo SINE Alu -9 303 145 2172 133 3 0 chr12 7008357 7008651 -136777804 - AluSx SINE Alu -17 295 1 1873 131 6 85 chr12 7008651 7008786 -136777669 - AluJo SINE Alu -167 145 1 1680 115 99 0 chr12 7009986 7010229 -136776226 - AluSq SINE Alu -14 299 33 187 367 10 0 chr12 7010233 7010331 -136776124 + MIR SINE MIR 150 248 -14 2290 76 41 0 chr12 7011663 7011954 -136774501 + AluSq SINE Alu 1 303 -10 2277 71 34 17 chr12 7011956 7012251 -136774204 + AluSc SINE Alu 1 300 -9 602 124 29 109 chr12 7012302 7012439 -136774016 - FLAM_C SINE Alu -7 126 1 276 241 241 9 chr12 7012780 7012896 -136773559 - MIR SINE MIR -57 205 63 2067 91 34 47 chr12 7014555 7014694 -136771761 + AluSp SINE Alu 1 140 -173 2375 84 3 3 chr12 7014694 7014991 -136771464 + AluSq SINE Alu 5 301 -12 2067 91 34 47 chr12 7014991 7015149 -136771306 + AluSp SINE Alu 140 294 -19 2234 118 10 0 chr12 7015158 7015455 -136771000 + AluSx SINE Alu 1 300 -12 669 159 0 110 chr12 7015461 7015576 -136770879 + FLAM_A SINE Alu 1 98 -204 2121 78 17 34 chr12 7015576 7015871 -136770584 - AluSg SINE Alu -20 290 1 669 159 0 110 chr12 7015871 7015900 -136770555 + FLAM_A SINE Alu 98 129 -173 2172 118 10 0 chr12 7016753 7017041 -136769414 + AluSx SINE Alu 1 291 -21 21 36 0 0 chr12 7017054 7017082 -136769373 + AT_rich Low_complexity Low_complexity 1 28 0 296 388 55 0 chr12 7017239 7017494 -136768961 - L1ME3 LINE L1 -277 5885 5617 1361 222 54 13 chr12 7017860 7018175 -136768280 + MER58B DNA MER1_type 1 328 -13 2159 135 0 7 chr12 7018177 7018480 -136767975 + AluSx SINE Alu 1 301 -11 223 337 31 38 chr12 7018689 7018950 -136767505 + L2 LINE L2 2715 2973 -341 1032 154 178 65 chr12 7019061 7019092 -136767363 - AluJb SINE Alu -16 296 270 2281 99 0 0 chr12 7019092 7019386 -136767069 + AluSc SINE Alu 5 298 -11 1032 154 178 65 chr12 7019386 7019568 -136766887 - AluJb SINE Alu -42 270 59 817 83 9 0 chr12 7019617 7019726 -136766729 - AluSc SINE Alu -10 299 190 1091 151 0 0 chr12 7019953 7020112 -136766343 - AluSg/x SINE Alu -17 293 135 2044 141 13 10 chr12 7020148 7020454 -136766001 + AluSx SINE Alu 1 307 -5 1766 130 3 31 chr12 7022045 7022179 -136764276 + AluSx SINE Alu 2 138 -176 2141 83 66 21 chr12 7022179 7022314 -136764141 + AluSx SINE Alu 1 128 -184 2408 92 3 16 chr12 7022314 7022629 -136763826 + AluSx SINE Alu 1 311 -1 2141 83 66 21 chr12 7022629 7022782 -136763673 + AluSx SINE Alu 128 302 -10 2633 53 0 0 chr12 7022786 7023089 -136763366 + AluY SINE Alu 1 303 -8 1766 130 3 31 chr12 7023089 7023270 -136763185 + AluSx SINE Alu 141 314 0 2246 109 13 3 chr12 7023436 7023739 -136762716 + AluSp SINE Alu 1 306 -7 2064 139 7 0 chr12 7023739 7024040 -136762415 + AluSc SINE Alu 1 304 -5 1808 95 0 0 chr12 7024892 7025114 -136761341 - AluSq SINE Alu -91 222 1 238 210 0 0 chr12 7026982 7027044 -136759411 + L1ME LINE L1 5717 5778 -343 823 180 77 6 chr12 7027044 7027227 -136759228 - MER2 DNA MER2_type 0 345 150 217 254 51 0 chr12 7027242 7027301 -136759154 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 1638 169 59 0 chr12 7027422 7027695 -136758760 - AluJb SINE Alu -23 289 1 25 31 0 0 chr12 7027728 7027760 -136758695 + AT_rich Low_complexity Low_complexity 1 32 0 2301 74 7 0 chr12 7028309 7028593 -136757862 - AluY SINE Alu -25 286 1 1613 90 0 5 chr12 7028612 7028813 -136757642 + AluSg/x SINE Alu 94 293 -17 2168 122 0 7 chr12 7028827 7029121 -136757334 + AluSx SINE Alu 1 292 -20 2257 84 0 11 chr12 7029128 7029415 -136757040 + AluY SINE Alu 1 284 -27 198 91 0 0 chr12 7029415 7029448 -136757007 + (CATA)n Simple_repeat Simple_repeat 2 34 0 1342 183 119 0 chr12 7029454 7029706 -136756749 + AluJo SINE Alu 1 282 -30 2150 136 3 0 chr12 7029706 7030007 -136756448 - AluSx SINE Alu -8 304 3 2267 114 0 7 chr12 7031507 7031806 -136754649 + AluSx SINE Alu 1 297 -15 1063 169 0 33 chr12 7031807 7031977 -136754478 + AluJo/FRAM SINE Alu 134 299 -13 1584 120 14 0 chr12 7031977 7032194 -136754261 + AluSq SINE Alu 1 220 -93 1063 169 0 33 chr12 7032194 7032207 -136754248 + AluJo/FRAM SINE Alu 299 311 -1 2398 216 59 32 chr12 7032211 7032498 -136753957 + L1MC4a LINE L1 7074 7352 -456 2389 94 0 0 chr12 7032498 7032796 -136753659 + AluSc SINE Alu 1 298 -11 2398 216 59 32 chr12 7032796 7032928 -136753527 + L1MC4a LINE L1 7352 7479 -329 2246 108 10 7 chr12 7032928 7033224 -136753231 + AluSx SINE Alu 1 297 -15 2398 216 59 32 chr12 7033224 7033519 -136752936 + L1MC4a LINE L1 7479 7808 0 1622 209 0 17 chr12 7033550 7033852 -136752603 + AluJo SINE Alu 3 299 -13 2590 71 0 3 chr12 7033854 7034163 -136752292 + AluSc SINE Alu 1 308 -1 184 250 0 0 chr12 7034187 7034227 -136752228 + MIR SINE MIR 63 102 -106 2295 79 3 0 chr12 7036855 7037146 -136749309 - AluSp SINE Alu -21 292 1 2234 82 0 50 chr12 7038501 7038820 -136747635 + AluSq SINE Alu 1 303 -10 1069 159 0 0 chr12 7038820 7038990 -136747465 + AluSc SINE Alu 132 301 -8 1797 109 7 63 chr12 7039379 7039529 -136746926 + AluSx SINE Alu 1 126 -185 2294 82 0 0 chr12 7039529 7039822 -136746633 + AluSx SINE Alu 1 293 -19 1797 109 7 63 chr12 7039822 7039999 -136746456 + AluSx SINE Alu 126 311 0 2050 103 22 22 chr12 7039999 7040310 -136746145 + AluY SINE Alu 1 311 0 750 260 0 0 chr12 7040331 7040485 -136745970 + FRAM SINE Alu 1 154 -12 2125 104 3 10 chr12 7040492 7040801 -136745654 + AluSx SINE Alu 1 307 -5 2203 91 0 3 chr12 7041540 7041837 -136744618 + AluSc SINE Alu 1 296 -13 403 134 30 0 chr12 7041886 7041953 -136744502 - MER46A DNA MER2_type 0 236 168 259 148 37 0 chr12 7041923 7041977 -136744478 + MER46A DNA MER2_type 99 154 -82 * 1403 194 0 48 chr12 7042166 7042480 -136743975 + AluJo SINE Alu 6 304 -8 198 0 0 0 chr12 7044990 7045012 -136741443 + (TCC)n Simple_repeat Simple_repeat 3 24 0 2109 105 14 0 chr12 7047010 7047305 -136739150 + AluSx SINE Alu 4 302 -10 241 268 32 16 chr12 7049676 7049799 -136736656 + (CGGGG)n Simple_repeat Simple_repeat 4 128 0 473 0 18 0 chr12 7050683 7050740 -136735715 + (CA)n Simple_repeat Simple_repeat 2 59 0 2165 112 3 0 chr12 7052747 7053050 -136733405 + AluSg SINE Alu 1 304 -6 1365 148 103 8 chr12 7053184 7053427 -136733028 - AluJb SINE Alu 0 312 47 2477 56 3 0 chr12 7053439 7053744 -136732711 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 7055956 7056015 -136730440 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 7057150 7057299 -136729156 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 7057679 7057841 -136728614 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 7058131 7058436 -136728019 + AluSx SINE Alu 1 305 -7 464 82 0 0 chr12 7058441 7058502 -136727953 + Alu SINE Alu 2 62 -248 1225 186 8 35 chr12 7058624 7058882 -136727573 - AluSx SINE Alu -61 251 1 2070 123 16 0 chr12 7058895 7059203 -136727252 - AluSq SINE Alu 0 313 1 2193 116 0 3 chr12 7060411 7060722 -136725733 - AluSg SINE Alu 0 310 1 234 252 118 34 chr12 7060857 7060976 -136725479 - L3b LINE CR1 -146 1437 1309 2222 92 0 10 chr12 7061859 7062164 -136724291 - AluSq SINE Alu -11 302 1 1333 104 0 120 chr12 7062423 7062466 -136723989 + AluJo SINE Alu 85 132 -180 2145 98 0 0 chr12 7062466 7062752 -136723703 - AluSc SINE Alu -20 289 4 1333 104 0 120 chr12 7062752 7062783 -136723672 + AluJo SINE Alu 132 165 -147 1683 137 10 64 chr12 7062783 7063096 -136723359 + AluSx SINE Alu 1 296 -16 1333 104 0 120 chr12 7063096 7063257 -136723198 + AluJo SINE Alu 165 292 -20 2273 110 0 0 chr12 7063257 7063566 -136722889 + AluSg1 SINE Alu 1 309 0 1333 104 0 120 chr12 7063566 7063578 -136722877 + AluJo SINE Alu 292 304 -8 199 222 93 0 chr12 7063753 7063807 -136722648 - MIR3 SINE MIR -19 189 131 261 0 0 0 chr12 7064407 7064436 -136722019 + (GGCTG)n Simple_repeat Simple_repeat 5 33 0 283 227 147 0 chr12 7065105 7065180 -136721275 + MER103 DNA DNA 8 93 -73 259 195 85 24 chr12 7065188 7065270 -136721185 + L1MC5 LINE L1 7820 7906 -55 2077 99 0 11 chr12 7065395 7065701 -136720754 + AluSg SINE Alu 1 303 0 1744 159 0 3 chr12 7065800 7066090 -136720365 + AluJb SINE Alu 22 310 -2 254 327 73 42 chr12 7067005 7067170 -136719285 - MIR3 SINE MIR -21 187 18 315 253 0 13 chr12 7068218 7068297 -136718158 - MIR SINE MIR -101 107 30 546 301 52 16 chr12 7069117 7069366 -136717089 + L2 LINE L2 2127 2384 -930 665 299 33 29 chr12 7069366 7069607 -136716848 - MIR SINE MIR 0 262 21 754 146 31 23 chr12 7070218 7070348 -136716107 + FLAM_C SINE Alu 2 132 -11 311 313 27 33 chr12 7070358 7070508 -136715947 + L2 LINE L2 2915 3063 -209 471 77 0 44 chr12 7070729 7070820 -136715635 - L1M4 LINE L1 -1093 5053 4967 271 290 270 0 chr12 7070901 7071101 -136715354 - L1M4 LINE L1 -1160 4986 4733 1885 134 0 20 chr12 7071419 7071717 -136714738 + AluJo SINE Alu 1 292 -20 487 277 22 0 chr12 7072242 7072379 -136714076 - MIR3 SINE MIR -33 175 36 294 333 0 0 chr12 7072800 7072896 -136713559 + CT-rich Low_complexity Low_complexity 3 98 0 2516 59 0 0 chr12 7074103 7074409 -136712046 - AluY SINE Alu -5 306 1 2055 110 0 39 chr12 7074412 7074721 -136711734 - AluSx SINE Alu -15 297 1 2280 77 3 3 chr12 7076036 7076333 -136710122 - AluSc SINE Alu -12 297 1 1071 88 0 0 chr12 7076333 7076469 -136709986 - AluSq/x SINE Alu -176 136 1 422 285 83 7 chr12 7076470 7076614 -136709841 - MIR SINE MIR -48 214 60 1344 150 0 26 chr12 7076834 7077067 -136709388 + AluJb SINE Alu 85 311 -1 1757 133 7 18 chr12 7077082 7077402 -136709053 + AluJb SINE Alu 1 317 0 716 142 0 0 chr12 7077406 7077512 -136708943 + AluSq/x SINE Alu 3 108 -204 2246 99 3 0 chr12 7077514 7077818 -136708637 + AluY SINE Alu 1 305 -6 1363 139 102 16 chr12 7077952 7078196 -136708259 - AluJb SINE Alu -1 311 47 2434 56 7 0 chr12 7078208 7078512 -136707943 - AluSp SINE Alu -7 306 1 208 153 0 34 chr12 7080723 7080782 -136705673 + C-rich Low_complexity Low_complexity 2 58 0 267 275 0 54 chr12 7081917 7082066 -136704389 + CT-rich Low_complexity Low_complexity 2 142 0 485 272 31 43 chr12 7082446 7082608 -136703847 - MIR SINE MIR -75 187 28 2147 118 0 0 chr12 7082898 7083203 -136703252 + AluSx SINE Alu 1 305 -7 2128 106 0 7 chr12 7083207 7083510 -136702945 + AluSc SINE Alu 1 301 -8 222 314 161 17 chr12 7084045 7084250 -136702205 + MIR SINE MIR 20 248 -14 2321 85 3 0 chr12 7084260 7084565 -136701890 + AluSq SINE Alu 1 306 -7 204 280 51 108 chr12 7084827 7084984 -136701471 + L2 LINE L2 2568 2715 -599 749 167 19 119 chr12 7085133 7085343 -136701112 - L2 LINE L2 -1 3312 3124 281 158 12 0 chr12 7085773 7085855 -136700600 + (CA)n Simple_repeat Simple_repeat 2 84 0 2060 112 17 3 chr12 7086025 7086321 -136700134 + AluSx SINE Alu 1 300 -12 979 145 103 33 chr12 7086731 7086945 -136699510 + Charlie1 DNA MER1_type 5 233 -2528 512 136 104 0 chr12 7086935 7087060 -136699395 + Charlie1 DNA MER1_type 2620 2757 -4 * 358 57 80 11 chr12 7087102 7087190 -136699265 + GA-rich Low_complexity Low_complexity 1 94 0 251 266 18 83 chr12 7089379 7089488 -136696967 + MIR SINE MIR 1 102 -160 1514 168 6 78 chr12 7089493 7089624 -136696831 + AluJb SINE Alu 1 140 -172 2272 102 0 0 chr12 7089624 7089919 -136696536 + AluSq SINE Alu 1 295 -18 2339 85 0 13 chr12 7089920 7090236 -136696219 + AluSq SINE Alu 1 312 -1 2054 101 29 16 chr12 7090245 7090552 -136695903 + AluSx SINE Alu 1 311 -1 1514 168 6 78 chr12 7090552 7090729 -136695726 + AluJb SINE Alu 148 298 -14 2084 119 7 0 chr12 7090736 7091029 -136695426 + AluSx SINE Alu 1 295 -17 1893 182 0 0 chr12 7091036 7091338 -136695117 + AluSx SINE Alu 7 308 -4 302 277 139 7 chr12 7091407 7091544 -136694911 - L2 LINE L2 -1 3312 3158 842 133 7 0 chr12 7091627 7091762 -136694693 + AluSg/x SINE Alu 171 306 -6 292 164 0 33 chr12 7091872 7091933 -136694522 + MIR SINE MIR 119 177 -85 183 42 0 0 chr12 7092087 7092111 -136694344 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1755 154 54 42 chr12 7092119 7092384 -136694071 - L1MB4 LINE L1 -87 6093 5820 2354 76 3 10 chr12 7092384 7092698 -136693757 - AluSp SINE Alu -1 312 1 1755 154 54 42 chr12 7092698 7092841 -136693614 - L1MB4 LINE L1 -360 5820 5680 2354 64 14 0 chr12 7092922 7093217 -136693238 + AluY SINE Alu 1 299 -12 2184 88 10 7 chr12 7093218 7093515 -136692940 + AluY SINE Alu 1 298 -13 1591 186 9 40 chr12 7093567 7093764 -136692691 - AluJo SINE Alu 0 312 127 2155 103 0 17 chr12 7093764 7094065 -136692390 + AluSx SINE Alu 1 296 -16 1591 186 9 40 chr12 7094065 7094189 -136692266 - AluJo SINE Alu -185 127 1 482 325 55 65 chr12 7094376 7094761 -136691694 + L2 LINE L2 2837 3217 -55 656 170 0 0 chr12 7094978 7095084 -136691371 + AluSg/x SINE Alu 193 298 -14 2173 88 10 3 chr12 7095086 7095382 -136691073 + AluSq SINE Alu 1 298 -15 2389 81 0 0 chr12 7095786 7096096 -136690359 - AluY SINE Alu -1 310 1 1916 113 0 31 chr12 7096223 7096403 -136690052 - AluSx SINE Alu -3 309 140 2370 79 3 3 chr12 7096403 7096708 -136689747 - AluSp SINE Alu -8 305 1 1916 113 0 31 chr12 7096708 7096819 -136689636 - AluSx SINE Alu -172 140 27 244 54 27 0 chr12 7096939 7096976 -136689479 - AluSx SINE Alu -262 38 1 690 252 40 17 chr12 7096993 7097180 -136689275 + L1MEc LINE L1 2315 2470 -3745 1995 107 47 10 chr12 7097180 7097478 -136688977 + AluSx SINE Alu 1 309 -3 690 252 40 17 chr12 7097478 7097570 -136688885 + L1MEc LINE L1 2470 2558 -3657 1560 115 0 5 chr12 7097570 7097787 -136688668 + AluSx SINE Alu 1 216 -96 4536 61 3 12 chr12 7097787 7098429 -136688026 + LTR13 LTR ERVK 372 1007 0 1276 199 127 8 chr12 7098442 7098709 -136687746 - AluJo SINE Alu -2 300 2 227 248 120 86 chr12 7098779 7098896 -136687559 + MIR3 SINE MIR 47 167 -41 198 238 48 48 chr12 7098970 7099033 -136687422 + L3 LINE CR1 1502 1564 -13 2369 121 30 30 chr12 7099225 7099589 -136686866 + THE1B LTR MaLR 1 364 0 2253 73 0 30 chr12 7099634 7099934 -136686521 - AluY SINE Alu -17 294 4 2194 99 10 0 chr12 7100349 7100643 -136685812 + AluSx SINE Alu 1 297 -15 260 296 68 38 chr12 7101677 7101809 -136684646 - MIR3 SINE MIR -64 144 9 330 204 93 37 chr12 7102393 7102501 -136683954 - MIR3 SINE MIR -82 126 13 2090 108 30 0 chr12 7102591 7102886 -136683569 + AluSx SINE Alu 1 304 -8 2136 96 0 45 chr12 7105328 7105641 -136680814 + AluSg SINE Alu 1 299 -11 1523 105 113 4 chr12 7107113 7107352 -136679103 - AluSx SINE Alu -9 303 39 2157 118 7 0 chr12 7110670 7110976 -136675479 + AluSg SINE Alu 1 308 -2 1053 135 35 6 chr12 7110976 7111146 -136675309 + AluSg/x SINE Alu 132 306 -4 809 129 0 24 chr12 7111309 7111433 -136675022 - AluJb SINE Alu -191 121 1 2187 97 3 34 chr12 7111510 7111831 -136674624 + AluSx SINE Alu 1 311 -1 1717 145 99 0 chr12 7111836 7112118 -136674337 + AluJo SINE Alu 1 310 -2 209 200 11 53 chr12 7112270 7112365 -136674090 + CT-rich Low_complexity Low_complexity 1 91 0 2456 50 13 3 chr12 7112365 7112665 -136673790 - AluY SINE Alu -8 303 1 304 354 130 5 chr12 7112666 7112760 -136673695 - HAL1 LINE L1 -1218 1289 1208 2108 112 16 16 chr12 7112760 7113072 -136673383 - AluSp SINE Alu -1 312 1 304 354 130 5 chr12 7113072 7113169 -136673286 - HAL1 LINE L1 -1299 1208 1074 246 95 0 0 chr12 7113667 7113709 -136672746 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 461 227 63 66 chr12 7113711 7113963 -136672492 - L2 LINE L2 -14 3258 2938 1015 95 0 7 chr12 7113963 7114100 -136672355 + AluJb SINE Alu 1 136 -176 2244 81 3 32 chr12 7114100 7114410 -136672045 + AluY SINE Alu 1 301 -10 1312 217 195 49 chr12 7114414 7114866 -136671589 - L2 LINE L2 -366 2948 2431 1514 127 26 138 chr12 7115167 7115514 -136670941 + AluYb8 SINE Alu 1 308 0 219 284 45 11 chr12 7115533 7115621 -136670834 - L2 LINE L2 -454 2860 2770 185 324 14 14 chr12 7115665 7115736 -136670719 - L2 LINE L2 -1 3271 3201 197 338 44 66 chr12 7115937 7116165 -136670290 - L2 LINE L2 -940 2374 2152 1112 109 65 45 chr12 7116531 7116589 -136669866 - MER3 DNA MER1_type -4 205 150 2200 79 0 4 chr12 7116589 7116890 -136669565 + AluSc SINE Alu 1 300 0 1112 109 65 45 chr12 7116890 7116902 -136669553 - MER3 DNA MER1_type -59 150 140 2051 101 3 41 chr12 7116902 7117238 -136669217 + AluSx SINE Alu 1 312 0 1112 109 65 45 chr12 7117238 7117366 -136669089 - MER3 DNA MER1_type -69 140 1 2100 128 0 0 chr12 7117513 7117811 -136668644 + AluSg SINE Alu 1 298 -12 1585 155 61 4 chr12 7117880 7118157 -136668298 + AluJb SINE Alu 8 300 -12 2093 133 3 0 chr12 7118717 7119019 -136667436 + AluSx SINE Alu 1 303 -9 234 298 6 37 chr12 7120505 7120666 -136665789 + GA-rich Low_complexity Low_complexity 5 160 0 21 36 0 0 chr12 7120916 7120944 -136665511 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 64 chr12 7122105 7122183 -136664272 + C-rich Low_complexity Low_complexity 1 73 0 258 105 0 0 chr12 7122470 7122508 -136663947 + (CCG)n Simple_repeat Simple_repeat 3 40 0 26 64 0 0 chr12 7122557 7122604 -136663851 + GC_rich Low_complexity Low_complexity 1 47 0 30 97 0 0 chr12 7122655 7122748 -136663707 + GC_rich Low_complexity Low_complexity 1 93 0 23 0 0 0 chr12 7123497 7123520 -136662935 + GC_rich Low_complexity Low_complexity 1 23 0 213 324 0 0 chr12 7125512 7125580 -136660875 + GA-rich Low_complexity Low_complexity 1 68 0 335 287 10 0 chr12 7125823 7125924 -136660531 + GA-rich Low_complexity Low_complexity 3 104 0 386 224 197 14 chr12 7127740 7127887 -136658568 + MIR SINE MIR 86 259 -3 180 273 109 0 chr12 7132382 7132437 -136654018 - MIR SINE MIR -162 100 40 804 161 0 22 chr12 7132864 7133001 -136653454 + AluJb SINE Alu 1 134 -178 370 250 76 18 chr12 7133537 7133675 -136652780 + MIR SINE MIR 45 200 -8 237 313 0 0 chr12 7134075 7134142 -136652313 + CT-rich Low_complexity Low_complexity 2 68 0 201 132 0 0 chr12 7134519 7134557 -136651898 + (TC)n Simple_repeat Simple_repeat 1 38 0 381 131 0 0 chr12 7134785 7134846 -136651609 + (CA)n Simple_repeat Simple_repeat 1 61 0 397 213 159 8 chr12 7135334 7135474 -136650981 + MIR SINE MIR 34 191 -63 1980 169 0 7 chr12 7136209 7136511 -136649944 + AluJb SINE Alu 1 300 -12 242 169 0 68 chr12 7137159 7137218 -136649237 - MLT1F LTR MaLR -6 536 482 663 202 0 0 chr12 7137218 7137337 -136649118 + AluJo SINE Alu 1 119 -193 1413 96 0 0 chr12 7137337 7137514 -136648941 - AluSg/x SINE Alu -15 297 121 23 0 0 0 chr12 7137515 7137538 -136648917 + AT_rich Low_complexity Low_complexity 1 23 0 2247 82 0 14 chr12 7137538 7137831 -136648624 - AluY SINE Alu -22 289 1 918 235 0 0 chr12 7137852 7138039 -136648416 + AluJo SINE Alu 124 310 -2 1343 280 88 23 chr12 7138040 7138483 -136647972 - MLT1F LTR MaLR -68 474 3 212 261 120 43 chr12 7139501 7139593 -136646862 + MIR SINE MIR 118 216 -46 1970 161 0 27 chr12 7139737 7140066 -136646389 - 7SLRNA srpRNA srpRNA 0 320 1 1051 99 0 0 chr12 7140105 7140236 -136646219 - AluY SINE Alu -180 131 1 446 237 40 76 chr12 7140291 7140375 -136646080 + MIR SINE MIR 33 118 -144 1742 186 3 7 chr12 7140375 7140671 -136645784 + AluJo SINE Alu 1 295 -17 446 237 40 76 chr12 7140671 7140784 -136645671 + MIR SINE MIR 118 223 -39 2453 93 0 0 chr12 7141345 7141657 -136644798 + AluSx SINE Alu 1 312 0 780 174 82 51 chr12 7141672 7141820 -136644635 + L1MB3 LINE L1 5978 6135 -48 2443 96 0 0 chr12 7141820 7142121 -136644334 + AluSx SINE Alu 1 301 -11 780 174 82 51 chr12 7142121 7142167 -136644288 + L1MB3 LINE L1 6135 6178 -5 21 36 0 0 chr12 7142167 7142195 -136644260 + AT_rich Low_complexity Low_complexity 1 28 0 276 274 53 11 chr12 7142202 7142297 -136644158 - L2 LINE L2 -8 3264 3166 665 259 30 35 chr12 7142411 7142643 -136643812 + MLT1J LTR MaLR 279 509 -2 301 286 179 12 chr12 7142703 7142871 -136643584 + L2 LINE L2 3117 3312 -1 239 321 62 27 chr12 7142872 7142984 -136643471 - MER102b DNA MER1_type 0 341 226 * 800 281 58 8 chr12 7142957 7143199 -136643256 - MLT1J LTR MaLR -242 269 16 1402 154 27 64 chr12 7143243 7143541 -136642914 + Charlie1a DNA MER1_type 1 287 -1168 572 252 25 33 chr12 7143542 7143784 -136642671 + AluSq SINE Alu 2 241 -72 2341 93 16 19 chr12 7144692 7144866 -136641589 - AluSx SINE Alu 0 312 138 2233 124 0 3 chr12 7144866 7145173 -136641282 - AluSg SINE Alu -4 306 1 2341 93 16 19 chr12 7145173 7145311 -136641144 - AluSx SINE Alu -174 138 1 211 189 38 19 chr12 7145338 7145391 -136641064 - MIR3 SINE MIR -31 177 124 195 100 0 0 chr12 7146082 7146112 -136640343 + (A)n Simple_repeat Simple_repeat 1 30 0 195 69 0 0 chr12 7146254 7146283 -136640172 + (TA)n Simple_repeat Simple_repeat 2 30 0 393 22 0 0 chr12 7147346 7147392 -136639063 + (CTG)n Simple_repeat Simple_repeat 1 46 0 225 279 0 0 chr12 7147404 7147472 -136638983 + (CTGGGG)n Simple_repeat Simple_repeat 2 69 0 215 146 0 24 chr12 7147471 7147512 -136638943 + (CTG)n Simple_repeat Simple_repeat 1 40 0 * 2300 118 0 16 chr12 7147865 7148180 -136638275 + AluSx SINE Alu 1 310 -2 419 254 25 51 chr12 7148865 7148943 -136637512 + Charlie1b DNA MER1_type 1 77 -1378 2198 106 3 16 chr12 7148943 7149246 -136637209 - AluSx SINE Alu -13 299 1 419 254 25 51 chr12 7149246 7149285 -136637170 + Charlie1b DNA MER1_type 77 115 -1340 468 167 71 0 chr12 7149285 7149369 -136637086 + AluSg/x SINE Alu 193 282 -27 237 159 0 0 chr12 7149369 7149413 -136637042 + (CA)n Simple_repeat Simple_repeat 1 44 0 1162 171 115 67 chr12 7149494 7149591 -136636864 + Charlie1b DNA MER1_type 149 240 -2521 1740 178 7 3 chr12 7149591 7149883 -136636572 + AluJo SINE Alu 2 294 -18 1162 171 115 67 chr12 7149883 7150141 -136636314 + Charlie1b DNA MER1_type 240 521 -2 295 346 0 0 chr12 7153016 7153097 -136633358 + L2 LINE L2 3191 3271 -1 202 262 252 37 chr12 7154105 7154212 -136632243 + MIR SINE MIR 21 150 -58 23 0 0 0 chr12 7154530 7154553 -136631902 + AT_rich Low_complexity Low_complexity 1 23 0 360 300 132 11 chr12 7154674 7154864 -136631591 - MIR SINE MIR -1 261 49 249 254 36 0 chr12 7154867 7154922 -136631533 + L3 LINE CR1 1432 1488 -89 2307 81 7 10 chr12 7155463 7155758 -136630697 + AluSx SINE Alu 2 295 -17 564 238 37 6 chr12 7156493 7156657 -136629798 - MIR SINE MIR -45 217 49 420 235 35 35 chr12 7158173 7158288 -136628167 + L2 LINE L2 3193 3307 -6 1589 178 63 14 chr12 7159422 7159709 -136626746 - AluJb SINE Alu -11 301 1 2233 114 7 0 chr12 7159811 7160108 -136626347 + AluSq SINE Alu 1 299 -14 2279 88 27 7 chr12 7160379 7160674 -136625781 + AluSq SINE Alu 1 301 -12 1274 201 10 102 chr12 7161454 7161758 -136624697 + AluJo SINE Alu 1 276 -36 513 0 0 0 chr12 7161764 7161821 -136624634 + (CAAAA)n Simple_repeat Simple_repeat 1 57 0 1574 183 67 0 chr12 7161829 7162114 -136624341 + AluJb SINE Alu 9 312 0 2168 105 7 0 chr12 7162457 7162768 -136623687 + AluSx SINE Alu 5 317 0 1870 156 57 0 chr12 7162840 7163123 -136623332 + AluSx SINE Alu 1 299 -13 2181 127 0 0 chr12 7163174 7163465 -136622990 + AluSg SINE Alu 1 291 -19 633 203 198 6 chr12 7163489 7163671 -136622784 - MIR SINE MIR -1 261 45 236 121 0 0 chr12 7164262 7164295 -136622160 - MER91 DNA MER1_type -72 68 36 1889 146 0 0 chr12 7164515 7164795 -136621660 + AluJo SINE Alu 33 312 0 2202 108 6 19 chr12 7164942 7165256 -136621199 + AluSx SINE Alu 2 311 -1 2265 122 0 0 chr12 7165711 7166005 -136620450 - AluSx SINE Alu -18 294 1 341 267 219 0 chr12 7169538 7169725 -136616730 + L2 LINE L2 3085 3312 -1 2280 93 3 3 chr12 7170071 7170371 -136616084 - AluSq SINE Alu -12 301 2 200 228 43 57 chr12 7170375 7170485 -136615970 - MIR SINE MIR -63 145 65 1133 93 0 0 chr12 7170860 7171000 -136615455 + AluSp/q SINE Alu 164 303 -10 22 0 0 0 chr12 7171659 7171681 -136614774 + AT_rich Low_complexity Low_complexity 1 22 0 371 270 20 53 chr12 7173363 7173515 -136612940 + GA-rich Low_complexity Low_complexity 5 151 0 185 258 76 0 chr12 7176402 7176468 -136609987 + L2 LINE L2 2993 3063 -209 264 193 241 0 chr12 7176560 7176643 -136609812 + L2 LINE L2 3133 3235 -37 2347 109 0 0 chr12 7178417 7178719 -136607736 + AluSq SINE Alu 1 302 -11 257 312 5 58 chr12 7178989 7179178 -136607277 + GA-rich Low_complexity Low_complexity 2 180 0 265 229 0 43 chr12 7179305 7179375 -136607080 + GA-rich Low_complexity Low_complexity 4 70 0 227 206 8 71 chr12 7180108 7180234 -136606221 + (CGGGG)n Simple_repeat Simple_repeat 3 120 0 324 64 0 0 chr12 7180242 7180289 -136606166 + (CTCGG)n Simple_repeat Simple_repeat 5 51 0 852 125 0 29 chr12 7180563 7180699 -136605756 - FLAM_C SINE Alu -11 132 1 497 301 75 45 chr12 7180894 7181251 -136605204 + L2 LINE L2 2771 3134 -179 * 2054 251 113 22 chr12 7181235 7181955 -136604500 + L2 LINE L2 2005 2789 -525 938 137 0 0 chr12 7182061 7182192 -136604263 - AluSg/x SINE Alu -16 294 164 1116 113 0 7 chr12 7182251 7182402 -136604053 - AluSq/x SINE Alu -162 150 1 2358 108 0 0 chr12 7182548 7182855 -136603600 - AluSq SINE Alu -6 307 1 283 286 41 20 chr12 7182932 7183030 -136603425 + L2 LINE L2 3168 3267 -5 1240 119 8 128 chr12 7183623 7183866 -136602589 - AluJb SINE Alu -16 296 83 351 250 22 0 chr12 7183898 7183990 -136602465 - L2 LINE L2 -41 3231 3138 917 141 0 0 chr12 7184129 7184257 -136602198 - FLAM_C SINE Alu -13 130 3 767 237 212 49 chr12 7184279 7184521 -136601934 + L2 LINE L2 1329 1530 -1784 2672 24 7 0 chr12 7184521 7184817 -136601638 - AluY SINE Alu -13 298 1 767 237 212 49 chr12 7184817 7185022 -136601433 + L2 LINE L2 1530 1849 -1465 381 75 0 0 chr12 7185035 7185088 -136601367 - AluY SINE Alu -3 297 245 1526 66 0 6 chr12 7185088 7185270 -136601185 - AluY SINE Alu -130 181 1 1653 146 3 65 chr12 7185291 7185554 -136600901 - AluJo SINE Alu -11 301 60 2460 80 7 0 chr12 7185554 7185855 -136600600 - AluSc SINE Alu -6 303 1 1653 146 3 65 chr12 7185855 7185912 -136600543 - AluJo SINE Alu -252 60 1 2374 109 3 0 chr12 7185919 7186230 -136600225 - AluSx SINE Alu 0 312 1 2125 119 10 0 chr12 7186232 7186526 -136599929 - AluSq SINE Alu -16 297 1 2271 109 0 6 chr12 7186794 7187106 -136599349 + AluY SINE Alu 1 310 -1 383 140 0 0 chr12 7187115 7187172 -136599283 + AluS SINE Alu 1 57 -251 1303 88 26 5 chr12 7187192 7187385 -136599070 + LTR3b LTR ERVK 304 500 0 1473 178 0 20 chr12 7187386 7187639 -136598816 + AluJb SINE Alu 50 297 -15 643 153 0 0 chr12 7187689 7187800 -136598655 - AluSx SINE Alu -2 307 197 944 76 30 15 chr12 7187800 7187932 -136598523 - AluSx SINE Alu -175 138 5 2425 75 20 7 chr12 7187952 7188258 -136598197 - AluY SINE Alu -1 310 1 1140 106 0 19 chr12 7188258 7188410 -136598045 - AluSq SINE Alu -16 297 147 6830 154 196 20 chr12 7188410 7189851 -136596604 + pTR5 LTR ERV1 743 2437 -1 540 152 0 50 chr12 7189851 7189872 -136596583 - AluSg SINE Alu -158 152 131 2011 138 14 3 chr12 7189872 7190169 -136596286 - AluSq SINE Alu -13 300 1 540 152 0 50 chr12 7190169 7190246 -136596209 - AluSg SINE Alu -179 131 59 1040 128 27 0 chr12 7190258 7190406 -136596049 - AluSx SINE Alu -159 153 2 653 145 8 0 chr12 7190433 7190550 -136595905 - FLAM_A SINE Alu 0 142 25 405 297 14 0 chr12 7190551 7190696 -136595759 - L1M4 LINE L1 -2449 3697 3551 2073 119 24 0 chr12 7190742 7191035 -136595420 + AluSq SINE Alu 1 300 -13 2426 99 0 0 chr12 7191040 7191343 -136595112 + AluSx SINE Alu 1 303 -9 2337 93 0 7 chr12 7191348 7191650 -136594805 + AluY SINE Alu 1 300 -11 1217 119 11 0 chr12 7191651 7191828 -136594627 + AluSg/x SINE Alu 134 312 0 675 158 9 0 chr12 7191854 7191968 -136594487 - FLAM_C SINE Alu -15 118 4 1371 264 135 17 chr12 7191973 7192062 -136594393 + L2 LINE L2 2453 2530 -783 2142 133 3 0 chr12 7192062 7192356 -136594099 + AluSx SINE Alu 1 295 -17 222 37 0 0 chr12 7192357 7192384 -136594071 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1371 264 135 17 chr12 7192384 7192968 -136593487 + L2 LINE L2 2529 3227 -86 186 250 143 0 chr12 7193106 7193162 -136593293 + L2 LINE L2 3209 3272 0 343 275 22 33 chr12 7193237 7193419 -136593036 + CT-rich Low_complexity Low_complexity 1 180 0 301 363 112 6 chr12 7193420 7193599 -136592856 - MIR3 SINE MIR -5 203 6 2105 138 0 40 chr12 7193627 7193952 -136592503 - AluSx SINE Alu 0 312 1 2058 133 0 37 chr12 7193959 7194283 -136592172 - AluSx SINE Alu 0 312 1 338 333 82 7 chr12 7194307 7194454 -136592001 + MIR SINE MIR 34 191 -71 2241 109 7 0 chr12 7194468 7194770 -136591685 + AluSg SINE Alu 1 304 -6 619 111 0 0 chr12 7194779 7194878 -136591577 + AluJ/FRAM SINE Alu 214 312 0 2668 46 3 0 chr12 7194988 7195294 -136591161 + AluY SINE Alu 1 307 -4 213 257 40 14 chr12 7195396 7195470 -136590985 + CT-rich Low_complexity Low_complexity 3 78 0 250 224 188 0 chr12 7195609 7195694 -136590761 + MIR SINE MIR 96 196 -66 198 294 0 0 chr12 7195864 7195915 -136590540 + MIR SINE MIR 95 145 -63 218 197 158 0 chr12 7196039 7196115 -136590340 + MIR SINE MIR 175 262 0 202 261 82 91 chr12 7197593 7197713 -136588742 + MIR3 SINE MIR 14 143 -119 2485 79 0 3 chr12 7197713 7198018 -136588437 - AluY SINE Alu -7 304 1 202 261 82 91 chr12 7198018 7198106 -136588349 + MIR3 SINE MIR 143 230 -32 1069 183 134 15 chr12 7198470 7198594 -136587861 + AluSx SINE Alu 1 109 -193 2040 97 93 0 chr12 7198594 7198873 -136587582 + AluY SINE Alu 1 305 -6 2211 96 0 26 chr12 7198876 7199204 -136587251 + AluSg SINE Alu 1 310 0 1069 183 134 15 chr12 7199204 7199343 -136587112 + AluSx SINE Alu 110 300 -2 211 320 40 30 chr12 7199381 7199481 -136586974 - L2 LINE L2 -61 3252 3152 2469 93 0 0 chr12 7199619 7199921 -136586534 + AluSx SINE Alu 1 302 -10 1550 190 4 7 chr12 7202607 7202881 -136583574 - AluJo SINE Alu -39 273 1 222 37 0 0 chr12 7203525 7203552 -136582903 + (TC)n Simple_repeat Simple_repeat 2 28 0 1972 119 42 7 chr12 7204623 7204909 -136581546 + AluSx SINE Alu 1 296 -16 2390 75 3 3 chr12 7204909 7205202 -136581253 + AluY SINE Alu 1 293 -18 2378 95 0 0 chr12 7205662 7205958 -136580497 + AluSc SINE Alu 1 296 -13 2034 41 0 12 chr12 7206071 7206313 -136580142 + AluY SINE Alu 63 301 -10 3144 185 31 52 chr12 7206316 7207078 -136579377 + LTR5 LTR ERVK 224 969 0 896 126 81 17 chr12 7207296 7207470 -136578985 + MER5A DNA MER1_type 2 186 -3 538 186 10 0 chr12 7207623 7207725 -136578730 - FRAM SINE Alu -18 158 56 568 263 154 54 chr12 7208536 7208977 -136577478 + LTR33 LTR ERVL 22 506 -15 670 98 9 53 chr12 7209153 7209378 -136577077 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 2178 113 7 10 chr12 7209395 7209705 -136576750 + AluSx SINE Alu 1 309 -3 232 125 10 77 chr12 7209714 7209809 -136576646 + (TAGA)n Simple_repeat Simple_repeat 2 91 -7 2459 88 0 0 chr12 7209809 7210103 -136576352 + AluSx SINE Alu 1 294 -18 232 125 10 77 chr12 7210103 7210111 -136576344 + (TAGA)n Simple_repeat Simple_repeat 91 98 0 2219 92 28 0 chr12 7210116 7210400 -136576055 + AluSx SINE Alu 3 294 -18 648 41 41 33 chr12 7210400 7210522 -136575933 + (TAGA)n Simple_repeat Simple_repeat 2 124 0 404 114 4 15 chr12 7210530 7210775 -136575680 + AluSq SINE Alu 2 293 -19 572 0 15 0 chr12 7210775 7210843 -136575612 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 231 88 0 0 chr12 7211490 7211524 -136574931 + (TC)n Simple_repeat Simple_repeat 1 34 0 1874 153 7 3 chr12 7212594 7212882 -136573573 - AluJb SINE Alu -23 289 1 239 163 0 0 chr12 7212894 7212937 -136573518 - L2 LINE L2 -5 3308 3266 2223 125 0 0 chr12 7212938 7213243 -136573212 + AluSx SINE Alu 1 305 -7 229 312 14 36 chr12 7214311 7214449 -136572006 + T-rich Low_complexity Low_complexity 4 138 0 244 277 59 30 chr12 7214568 7214669 -136571786 - L2 LINE L2 -26 3246 3143 670 300 22 48 chr12 7215456 7215869 -136570586 + L2 LINE L2 2246 2647 -667 1056 195 0 0 chr12 7215939 7216113 -136570342 + AluJb SINE Alu 137 310 -2 638 184 137 12 chr12 7216120 7216288 -136570167 - Charlie1 DNA MER1_type -995 1766 1578 2085 108 31 3 chr12 7216323 7216609 -136569846 - AluSp SINE Alu -19 294 1 1086 244 137 57 chr12 7217319 7217815 -136568640 - MLT1E LTR MaLR -6 587 1 306 310 0 50 chr12 7217822 7217922 -136568533 + MER5A DNA MER1_type 21 115 -74 283 317 0 39 chr12 7217836 7217940 -136568515 - MER5A DNA MER1_type -23 166 67 * 307 348 65 0 chr12 7218193 7218331 -136568124 - L2 LINE L2 -209 3063 2917 431 165 0 0 chr12 7218445 7218524 -136567931 - AluJ/FRAM SINE Alu -3 309 231 603 234 128 87 chr12 7218730 7219144 -136567311 + L1MDb LINE L1 889 1319 -5224 2291 120 0 10 chr12 7219154 7219463 -136566992 + AluSq SINE Alu 1 306 -7 256 214 114 0 chr12 7219464 7219534 -136566921 + L1MDb LINE L1 1590 1667 -4873 1161 127 6 6 chr12 7219544 7219709 -136566746 + AluSg/x SINE Alu 133 297 -13 1277 267 99 8 chr12 7219709 7220215 -136566240 + L1MDb LINE L1 1672 2223 -4317 2286 101 3 0 chr12 7220226 7220522 -136565933 + AluSq SINE Alu 1 297 -16 1916 164 0 13 chr12 7220533 7220831 -136565624 + AluJb SINE Alu 1 294 -18 228 250 96 0 chr12 7220946 7221050 -136565405 + L1MDb LINE L1 2235 2348 -4192 1002 231 9 14 chr12 7221051 7221267 -136565188 + MER58A DNA MER1_type 2 216 -8 1566 163 0 0 chr12 7221267 7221512 -136564943 + AluSg SINE Alu 1 245 -65 400 156 36 66 chr12 7221516 7221542 -136564913 + L1MDb LINE L1 2342 2367 -4173 2219 77 0 68 chr12 7221542 7221676 -136564779 + AluSc SINE Alu 1 143 -166 2566 28 0 56 chr12 7221676 7221997 -136564458 + AluY SINE Alu 1 303 -8 2219 77 0 68 chr12 7221997 7222185 -136564270 + AluSc SINE Alu 143 301 -8 2510 68 0 0 chr12 7222185 7222492 -136563963 + AluY SINE Alu 1 307 -4 400 156 36 66 chr12 7222492 7222631 -136563824 + L1MDb LINE L1 2365 2503 -4037 2355 86 26 3 chr12 7222644 7222947 -136563508 + AluY SINE Alu 2 311 0 227 152 0 0 chr12 7222997 7223043 -136563412 - Alu SINE Alu 0 303 258 23 33 0 0 chr12 7223189 7223219 -136563236 + AT_rich Low_complexity Low_complexity 1 30 0 2158 110 10 0 chr12 7223230 7223521 -136562934 + AluSc SINE Alu 5 298 -11 2268 129 0 0 chr12 7224792 7225095 -136561360 - AluSx SINE Alu -9 303 1 2229 113 0 26 chr12 7225102 7225413 -136561042 - AluSx SINE Alu -9 303 1 1547 149 108 11 chr12 7227122 7227390 -136559065 - AluJb SINE Alu -18 294 1 307 196 9 103 chr12 7227397 7227504 -136558951 - FLAM_A SINE Alu -8 125 29 1775 147 13 42 chr12 7227579 7227891 -136558564 - AluJb SINE Alu -9 303 1 2206 119 0 0 chr12 7227984 7228278 -136558177 - AluSx SINE Alu -18 294 1 2303 123 0 0 chr12 7228287 7228597 -136557858 - AluSx SINE Alu -2 310 1 214 211 0 0 chr12 7229210 7229248 -136557207 + T-rich Low_complexity Low_complexity 1 38 0 2134 121 16 22 chr12 7229410 7229724 -136556731 - AluSx SINE Alu 0 312 1 1996 149 3 3 chr12 7230125 7230420 -136556035 + AluSx SINE Alu 1 295 -17 2357 79 0 0 chr12 7230421 7230732 -136555723 + AluY SINE Alu 1 311 0 2362 102 3 0 chr12 7230904 7231199 -136555256 + AluSg SINE Alu 2 297 -13 446 109 0 0 chr12 7231345 7231409 -136555046 - AluS SINE Alu -237 75 12 442 259 70 96 chr12 7231453 7231564 -136554891 + L2 LINE L2 2599 2711 -561 2064 138 3 3 chr12 7231564 7231876 -136554579 + AluSx SINE Alu 1 312 0 442 259 70 96 chr12 7231876 7232211 -136554244 + L2 LINE L2 2711 3039 -233 1122 200 33 9 chr12 7232304 7232519 -136553936 + AluJo SINE Alu 1 220 -92 1093 122 0 0 chr12 7232541 7232688 -136553767 + AluSg/x SINE Alu 155 301 -9 2349 70 0 3 chr12 7232691 7232993 -136553462 + AluY SINE Alu 1 301 -10 538 221 15 29 chr12 7232998 7233134 -136553321 + FLAM_A SINE Alu 4 137 -5 300 304 0 11 chr12 7233179 7233271 -136553184 + L2 LINE L2 3182 3272 0 828 154 0 0 chr12 7233341 7233464 -136552991 + FLAM_C SINE Alu 2 124 -9 25 0 0 0 chr12 7233464 7233489 -136552966 + AT_rich Low_complexity Low_complexity 1 25 0 2086 124 3 0 chr12 7233489 7233787 -136552668 + AluSx SINE Alu 1 299 -13 200 59 29 0 chr12 7233792 7233826 -136552629 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 192 282 237 15 chr12 7233837 7233968 -136552487 + L2 LINE L2 1833 1992 -1322 1729 119 90 4 chr12 7233978 7234255 -136552200 - AluSq SINE Alu -12 301 1 2249 99 0 0 chr12 7234255 7234558 -136551897 - AluSg SINE Alu -7 303 1 1965 123 0 43 chr12 7234565 7234891 -136551564 - AluSx SINE Alu 0 312 1 744 282 68 82 chr12 7235290 7235645 -136550810 + L2 LINE L2 2921 3270 -2 2153 109 3 3 chr12 7237008 7237310 -136549145 - AluSp SINE Alu -11 302 1 267 156 234 0 chr12 7237985 7238062 -136548393 + MIR SINE MIR 99 193 -69 661 238 43 5 chr12 7238411 7238596 -136547859 - AluSq SINE Alu 0 313 122 1304 220 14 14 chr12 7238604 7238890 -136547565 - AluSg SINE Alu -14 286 1 1329 221 13 30 chr12 7238893 7239053 -136547402 - AluJo SINE Alu -8 294 140 1943 119 7 4 chr12 7239053 7239331 -136547124 - AluSq SINE Alu -34 279 1 1329 221 13 30 chr12 7239331 7239469 -136546986 - AluJo SINE Alu -162 140 1 2015 103 13 13 chr12 7239592 7239893 -136546562 + AluSg SINE Alu 1 301 -9 2065 87 11 0 chr12 7239911 7240186 -136546269 + AluY SINE Alu 1 278 -33 258 32 0 0 chr12 7240201 7240232 -136546223 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1949 120 9 22 chr12 7240251 7240567 -136545888 + AluSx SINE Alu 1 312 0 2677 164 64 35 chr12 7240609 7241201 -136545254 + pTR5 LTR ERV1 738 1346 -1092 3655 163 109 28 chr12 7241215 7241975 -136544480 + LTR12 LTR ERV1 5 826 0 395 147 73 0 chr12 7241975 7242043 -136544412 + U6 snRNA snRNA 34 106 -1 1202 215 30 44 chr12 7242064 7242201 -136544254 + AluJo SINE Alu 1 138 -174 1943 119 7 4 chr12 7242201 7242479 -136543976 + AluSq SINE Alu 1 279 -34 1202 215 30 44 chr12 7242479 7242639 -136543816 + AluJo SINE Alu 138 294 -18 2198 106 7 0 chr12 7242642 7242943 -136543512 + AluSg SINE Alu 1 303 -7 2089 101 0 0 chr12 7242966 7243275 -136543180 + AluSg SINE Alu 5 313 0 902 147 61 35 chr12 7243278 7243476 -136542979 + AluJo SINE Alu 87 289 -23 1470 177 13 23 chr12 7243481 7243780 -136542675 + AluJo SINE Alu 1 296 -16 1777 166 3 0 chr12 7243783 7244079 -136542376 + AluJb SINE Alu 1 297 -15 298 301 13 46 chr12 7244081 7244245 -136542210 - L1ME3A LINE L1 -257 5909 5760 1143 203 38 31 chr12 7244478 7244739 -136541716 - L2 LINE L2 -621 2693 2431 598 241 91 66 chr12 7244888 7244941 -136541514 - L1ME3A LINE L1 -562 5600 5550 2076 109 0 0 chr12 7244941 7245252 -136541203 - AluSx SINE Alu 0 311 1 598 241 91 66 chr12 7245252 7245500 -136540955 - L1ME3A LINE L1 -612 5550 5310 2292 93 3 0 chr12 7245500 7245811 -136540644 - AluSx SINE Alu 0 312 1 2021 117 3 13 chr12 7245820 7246118 -136540337 - AluSx SINE Alu -17 295 1 598 241 91 66 chr12 7246118 7246312 -136540143 - L1ME3A LINE L1 -859 5303 5101 28 0 0 0 chr12 7246316 7246344 -136540111 + AT_rich Low_complexity Low_complexity 1 28 0 2160 94 0 10 chr12 7246344 7246643 -136539812 - AluSx SINE Alu -16 296 1 1052 113 0 0 chr12 7246644 7246795 -136539660 - AluSq SINE Alu -16 297 147 393 261 0 0 chr12 7246795 7246887 -136539568 + pTR5 LTR ERV1 743 834 -1604 1105 126 12 0 chr12 7247304 7247471 -136538984 - AluJb SINE Alu -16 296 128 248 164 0 55 chr12 7247499 7247554 -136538901 - FLAM_A SINE Alu 0 133 82 368 250 22 0 chr12 7247586 7247678 -136538777 - L2 LINE L2 -41 3231 3138 814 139 0 8 chr12 7247817 7247946 -136538509 - AluJ SINE Alu -182 130 3 424 227 42 50 chr12 7247971 7248090 -136538365 + L2 LINE L2 1332 1449 -1865 275 200 0 38 chr12 7249972 7250052 -136536403 + CT-rich Low_complexity Low_complexity 4 80 0 193 283 166 35 chr12 7251907 7252052 -136534403 - MIR SINE MIR -78 184 21 215 179 0 0 chr12 7252117 7252156 -136534299 + A-rich Low_complexity Low_complexity 4 42 0 233 288 45 0 chr12 7252771 7252837 -136533618 + MIR SINE MIR 117 185 -77 22 0 0 0 chr12 7254304 7254326 -136532129 + GC_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr12 7254445 7254476 -136531979 + GC_rich Low_complexity Low_complexity 1 31 0 4334 229 16 17 chr12 7255832 7257043 -136529412 + L1M4 LINE L1 3479 4690 -2875 1697 202 61 3 chr12 7257226 7257617 -136528838 - L1 LINE L1 -885 6680 6267 3788 60 10 4 chr12 7257620 7258121 -136528334 - L1MA1 LINE L1 -191 6111 5608 1310 199 17 20 chr12 7258126 7258427 -136528028 - L1 LINE L1 -1302 6263 5964 1307 115 5 29 chr12 7258544 7258753 -136527702 - L1PA13 LINE L1 -72 6091 5888 2934 234 24 36 chr12 7258755 7260020 -136526435 - L1 LINE L1 -4177 3389 2097 227 287 149 0 chr12 7260558 7260652 -136525803 + MER5A DNA MER1_type 9 116 -73 898 204 9 42 chr12 7260652 7260868 -136525587 + AluJo SINE Alu 85 293 -19 387 200 0 0 chr12 7263467 7263547 -136522908 - L1MA8 LINE L1 -1 6290 6211 183 326 90 22 chr12 7265064 7265153 -136521302 - MIR SINE MIR -108 154 60 841 246 21 38 chr12 7266101 7266337 -136520118 + MIR SINE MIR 19 250 -12 509 333 65 13 chr12 7266585 7266816 -136519639 + MIR SINE MIR 19 261 -1 286 230 103 0 chr12 7267555 7267642 -136518813 - MER5A DNA MER1_type -85 104 9 2290 86 0 0 chr12 7268863 7269164 -136517291 - AluY SINE Alu -10 301 1 2578 225 87 42 chr12 7269164 7269994 -136516461 + L1M4 LINE L1 4902 5768 -1797 1090 143 74 18 chr12 7270488 7270705 -136515750 + L1MB8 LINE L1 5935 6163 -15 451 167 0 105 chr12 7270955 7271069 -136515386 - AluY SINE Alu -5 306 205 234 184 0 0 chr12 7271580 7271618 -136514837 - L1M3 LINE L1 -673 5661 5624 1501 164 70 64 chr12 7271950 7272390 -136514065 - L1MB4 LINE L1 -2 6178 5736 325 239 34 29 chr12 7272703 7272826 -136513629 + MLT1L LTR MaLR 160 284 -304 302 243 56 19 chr12 7273047 7273154 -136513301 - L1MC4 LINE L1 -16 8026 7916 560 169 16 24 chr12 7277028 7277152 -136509303 - MER5A DNA MER1_type -66 123 1 923 120 103 40 chr12 7278160 7278366 -136508089 - MSTA LTR MaLR 0 428 180 449 228 28 107 chr12 7279093 7279308 -136507147 - MLT1J LTR MaLR -202 309 112 266 303 129 34 chr12 7279623 7279980 -136506475 - L1ME LINE L1 -239 5882 5492 334 268 18 18 chr12 7281002 7281114 -136505341 - L1ME LINE L1 -2962 3184 3073 248 268 14 14 chr12 7281115 7281186 -136505269 + CT-rich Low_complexity Low_complexity 3 73 0 1164 74 0 0 chr12 7481332 7481480 -136304975 + AluSg/x SINE Alu 159 306 -6 589 194 149 11 chr12 7481489 7481664 -136304791 + Charlie1 DNA MER1_type 1578 1776 -985 1010 193 0 0 chr12 7481685 7481861 -136304594 - AluJb SINE Alu 0 312 137 716 300 22 48 chr12 7481931 7482344 -136304111 - L2 LINE L2 -667 2647 2246 256 277 59 30 chr12 7483131 7483232 -136303223 + L2 LINE L2 3143 3246 -26 230 348 14 22 chr12 7483351 7483489 -136302966 + A-rich Low_complexity Low_complexity 4 140 0 2078 128 0 0 chr12 7484557 7484862 -136301593 - AluSx SINE Alu -7 305 1 234 163 0 0 chr12 7484863 7484906 -136301549 + L2 LINE L2 3266 3308 -5 1758 153 7 3 chr12 7484918 7485206 -136301249 + AluJb SINE Alu 1 289 -23 231 88 0 0 chr12 7486276 7486310 -136300145 + (GA)n Simple_repeat Simple_repeat 1 34 0 536 0 16 0 chr12 7486957 7487021 -136299434 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 439 103 0 0 chr12 7487021 7487079 -136299376 - AluSq SINE Alu -17 294 237 1177 117 6 17 chr12 7487088 7487268 -136299187 - AluSq SINE Alu -134 179 2 756 37 37 30 chr12 7487275 7487409 -136299046 + (TCTA)n Simple_repeat Simple_repeat 2 136 0 2088 92 28 0 chr12 7487409 7487693 -136298762 - AluSx SINE Alu -18 294 3 227 147 10 59 chr12 7487698 7487704 -136298751 + (TCTA)n Simple_repeat Simple_repeat 2 7 -91 2313 91 0 0 chr12 7487704 7488000 -136298455 - AluSx SINE Alu -16 296 1 227 147 10 59 chr12 7488000 7488095 -136298360 + (TCTA)n Simple_repeat Simple_repeat 7 98 0 2072 112 6 10 chr12 7488112 7488425 -136298030 - AluSx SINE Alu 0 312 1 312 304 93 31 chr12 7488430 7488624 -136297831 - L1MEd LINE L1 -4954 1165 960 300 111 0 0 chr12 7488626 7488671 -136297784 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 613 263 154 54 chr12 7488847 7489288 -136297167 - LTR33 LTR ERVL -15 506 22 581 186 10 0 chr12 7490099 7490201 -136296254 + FRAM SINE Alu 56 158 -18 976 126 81 17 chr12 7490354 7490528 -136295927 - MER5A DNA MER1_type -3 186 2 2976 182 31 52 chr12 7490746 7491508 -136294947 - LTR5 LTR ERVK 0 969 224 2298 51 0 10 chr12 7491511 7491803 -136294652 - AluY SINE Alu -10 301 13 1178 171 14 0 chr12 7491807 7492024 -136294431 - LTR5 LTR ERVK -749 220 1 2838 142 139 42 chr12 7492462 7492876 -136293579 - MER51D LTR ERV1 0 657 166 1834 109 0 0 chr12 7492876 7493124 -136293331 - AluSx SINE Alu -64 248 1 2838 142 139 42 chr12 7493124 7493308 -136293147 - MER51D LTR ERV1 -491 166 1 21 0 0 0 chr12 7494008 7494029 -136292426 + AT_rich Low_complexity Low_complexity 1 21 0 784 177 0 35 chr12 7494126 7494258 -136292197 + FLAM_C SINE Alu 7 135 -177 1865 158 0 0 chr12 7494258 7494549 -136291906 - AluJb SINE Alu -21 291 1 22 0 0 0 chr12 7494557 7494579 -136291876 + AT_rich Low_complexity Low_complexity 1 22 0 2041 128 3 0 chr12 7494579 7494875 -136291580 + AluSx SINE Alu 1 297 -15 2152 110 0 0 chr12 7494903 7495203 -136291252 - AluY SINE Alu -11 300 1 2083 131 0 3 chr12 7495211 7495517 -136290938 - AluSx SINE Alu -7 305 1 501 255 55 28 chr12 7495517 7495661 -136290794 - L1ME4a LINE L1 -1 6120 5965 1742 169 52 0 chr12 7495661 7495951 -136290504 - AluJb SINE Alu -7 305 1 501 255 55 28 chr12 7495951 7496061 -136290394 - L1ME4a LINE L1 -156 5965 5859 2003 105 14 10 chr12 7496082 7496376 -136290079 - AluSc SINE Alu -14 295 1 2034 137 7 0 chr12 7496492 7496792 -136289663 - AluSx SINE Alu -10 302 1 2140 91 0 3 chr12 7496846 7497173 -136289282 + AluY SINE Alu 1 326 0 2029 114 0 7 chr12 7497173 7497505 -136288950 + AluSc SINE Alu 1 309 0 270 0 0 0 chr12 7497506 7497536 -136288919 + (CA)n Simple_repeat Simple_repeat 1 30 0 2127 206 12 67 chr12 7497555 7497934 -136288521 + L1MD1 LINE L1 4019 4417 -1729 1883 145 3 43 chr12 7497934 7498078 -136288377 + AluJo SINE Alu 1 149 -163 2375 77 0 0 chr12 7498078 7498378 -136288077 + AluY SINE Alu 1 300 -11 1883 145 3 43 chr12 7498378 7498558 -136287897 + AluJo SINE Alu 149 312 0 2127 206 12 67 chr12 7498558 7498624 -136287831 + L1MD1 LINE L1 4417 4485 -1661 2114 127 7 0 chr12 7498624 7498931 -136287524 + AluSx SINE Alu 1 309 -3 2127 206 12 67 chr12 7498931 7499126 -136287329 + L1MD1 LINE L1 4485 4625 -1521 894 190 0 62 chr12 7499127 7499322 -136287133 + AluJo SINE Alu 125 307 -5 836 143 0 0 chr12 7499360 7499493 -136286962 + AluJb SINE Alu 1 133 -179 291 54 0 0 chr12 7499496 7499533 -136286922 + (CA)n Simple_repeat Simple_repeat 2 38 0 306 239 9 119 chr12 7499535 7499644 -136286811 - L1MC4 LINE L1 -1342 6700 6604 301 135 0 0 chr12 7499646 7499698 -136286757 - Alu SINE Alu 0 300 249 694 201 47 0 chr12 7499698 7499847 -136286608 + AluSg/x SINE Alu 152 307 -5 4927 152 67 8 chr12 7499853 7500229 -136286226 + L1MD1 LINE L1 5209 5561 -681 2571 42 0 0 chr12 7500229 7500538 -136285917 + AluY SINE Alu 1 309 -2 4927 152 67 8 chr12 7500538 7501142 -136285313 + L1MD1 LINE L1 5561 6239 -3 2180 112 3 0 chr12 7501143 7501447 -136285008 + AluSx SINE Alu 2 306 -6 2237 94 10 0 chr12 7501516 7501824 -136284631 + AluY SINE Alu 1 311 0 416 307 76 69 chr12 7501909 7502394 -136284061 - L1ME4a LINE L1 -230 5891 5310 1861 144 0 10 chr12 7502554 7502852 -136283603 + AluJb SINE Alu 1 295 -17 2281 87 0 0 chr12 7503232 7503530 -136282925 - AluSx SINE Alu -11 301 4 279 367 106 27 chr12 7503710 7503966 -136282489 - L2 LINE L2 -936 2378 2103 21 0 0 0 chr12 7504782 7504803 -136281652 + AT_rich Low_complexity Low_complexity 1 21 0 1322 156 0 59 chr12 7504805 7504824 -136281631 - AluJo SINE Alu 0 312 293 2241 76 3 58 chr12 7504824 7505154 -136281301 - AluSx SINE Alu 0 312 1 1322 156 0 59 chr12 7505154 7505390 -136281065 - AluJo SINE Alu -19 293 72 1548 159 8 0 chr12 7505461 7505712 -136280743 + AluSx SINE Alu 1 253 -59 2186 100 3 0 chr12 7505741 7506040 -136280415 + AluSp SINE Alu 1 300 -13 333 0 0 0 chr12 7506115 7506152 -136280303 + (TG)n Simple_repeat Simple_repeat 2 38 0 600 146 64 9 chr12 7506152 7506254 -136280201 - AluSg/x SINE Alu -25 284 174 990 166 6 0 chr12 7506256 7506413 -136280042 - FRAM SINE Alu -7 159 2 1296 207 79 18 chr12 7506417 7506697 -136279758 - AluJo SINE Alu -5 297 1 556 287 47 19 chr12 7506799 7507081 -136279374 - L1MC4a LINE L1 -277 5897 5521 430 285 15 44 chr12 7507104 7507241 -136279214 + MIR SINE MIR 82 214 -48 220 148 0 37 chr12 7507895 7507949 -136278506 + (GGAGA)n Simple_repeat Simple_repeat 1 52 0 733 230 83 44 chr12 7508862 7509066 -136277389 + MIR SINE MIR 51 262 0 224 297 117 0 chr12 7509955 7510066 -136276389 + MIR SINE MIR 23 146 -62 198 290 81 0 chr12 7510170 7510232 -136276223 - MIR SINE MIR 0 262 196 328 266 0 0 chr12 7510263 7510354 -136276101 - MIR SINE MIR -99 109 19 529 154 0 15 chr12 7510999 7511135 -136275320 + (CA)n Simple_repeat Simple_repeat 2 135 0 294 269 0 0 chr12 7511151 7511307 -136275148 + (CA)n Simple_repeat Simple_repeat 1 156 0 695 201 6 0 chr12 7511350 7511529 -136274926 + (CA)n Simple_repeat Simple_repeat 1 180 0 200 221 0 15 chr12 7512269 7512337 -136274118 + G-rich Low_complexity Low_complexity 2 68 0 284 296 11 39 chr12 7512339 7512518 -136273937 + GA-rich Low_complexity Low_complexity 3 176 0 213 318 37 9 chr12 7513044 7513151 -136273304 - MIR SINE MIR -67 141 32 278 250 122 73 chr12 7513287 7513468 -136272987 - MIR SINE MIR -22 186 19 369 0 0 0 chr12 7514159 7514200 -136272255 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr12 7514199 7514221 -136272234 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 261 167 0 0 chr12 7515094 7515148 -136271307 + GA-rich Low_complexity Low_complexity 1 54 0 300 282 0 29 chr12 7515452 7515555 -136270900 + CT-rich Low_complexity Low_complexity 3 102 0 203 103 26 0 chr12 7516056 7516095 -136270360 + CT-rich Low_complexity Low_complexity 2 41 0 219 324 124 14 chr12 7516581 7516726 -136269729 + L3b LINE CR1 1422 1582 -1 499 250 42 0 chr12 7521175 7521343 -136265112 + (TGGG)n Simple_repeat Simple_repeat 1 175 0 333 186 0 44 chr12 7521629 7521742 -136264713 + CT-rich Low_complexity Low_complexity 5 112 0 192 77 0 0 chr12 7521800 7521826 -136264629 + (CTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr12 7522181 7522203 -136264252 + GC_rich Low_complexity Low_complexity 1 22 0 211 200 0 0 chr12 7524938 7524983 -136261472 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 255 115 11 chr12 7525393 7525546 -136260909 + MIR SINE MIR 3 177 -69 805 193 21 101 chr12 7525670 7525908 -136260547 - MER20 DNA MER1_type 0 219 1 2255 93 0 6 chr12 7525934 7526245 -136260210 - AluSx SINE Alu -3 309 1 2023 87 0 4 chr12 7526271 7526546 -136259909 + AluSg SINE Alu 37 310 0 587 281 15 39 chr12 7526553 7526756 -136259699 + MIR SINE MIR 61 258 -4 394 306 93 32 chr12 7527820 7527995 -136258460 - L2 LINE L2 -6 3266 3103 2264 86 0 7 chr12 7527995 7528297 -136258158 + AluSp SINE Alu 1 300 -13 394 306 93 32 chr12 7528297 7528432 -136258023 - L2 LINE L2 -169 3103 2937 757 177 13 13 chr12 7528471 7528629 -136257826 + MIR SINE MIR 61 218 -44 2060 109 3 7 chr12 7528642 7528936 -136257519 + AluSq SINE Alu 1 293 -20 255 31 0 0 chr12 7528941 7528973 -136257482 + (TTAA)n Simple_repeat Simple_repeat 1 32 0 1871 130 23 10 chr12 7529290 7529591 -136256864 + AluJb SINE Alu 6 310 -2 402 283 62 14 chr12 7531745 7531890 -136254565 + MIR SINE MIR 103 254 -8 189 107 0 0 chr12 7532675 7532703 -136253752 + (GGA)n Simple_repeat Simple_repeat 3 30 0 189 0 0 0 chr12 7534235 7534256 -136252199 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 258 301 14 14 chr12 7535088 7535161 -136251294 - L2 LINE L2 0 3272 3200 570 181 16 16 chr12 7535290 7535417 -136251038 + MER104 DNA Tc2 1 127 -53 584 283 12 6 chr12 7535441 7535607 -136250848 - MIR SINE MIR -16 246 80 887 139 8 0 chr12 7535608 7535737 -136250718 + FLAM_C SINE Alu 1 130 -3 562 322 55 15 chr12 7535925 7536127 -136250328 - MER63A DNA MER1_type 0 210 1 2243 105 0 16 chr12 7537435 7537748 -136248707 - AluSx SINE Alu -4 308 1 1798 175 3 3 chr12 7537759 7538062 -136248393 - AluJo SINE Alu -9 303 1 1308 251 60 9 chr12 7538144 7538563 -136247892 - L1MC4 LINE L1 -131 7911 7472 372 287 81 22 chr12 7539619 7539755 -136246700 + MIR3 SINE MIR 39 182 -26 504 200 0 0 chr12 7539955 7540080 -136246375 + (CA)n Simple_repeat Simple_repeat 1 125 0 410 353 8 46 chr12 7540982 7541223 -136245232 - L2 LINE L2 -493 2821 2590 755 193 0 7 chr12 7541273 7541408 -136245047 + AluJo SINE Alu 10 143 -169 2030 146 0 10 chr12 7541409 7541718 -136244737 + AluJb SINE Alu 1 306 -6 433 283 256 33 chr12 7541719 7542118 -136244337 - L2 LINE L2 -789 2525 2038 1754 149 43 0 chr12 7543346 7543503 -136242952 - AluJb SINE Alu -16 296 120 209 33 33 0 chr12 7543503 7543533 -136242922 + (TG)n Simple_repeat Simple_repeat 2 32 0 1754 149 43 0 chr12 7543533 7543657 -136242798 - AluJb SINE Alu -192 120 3 1567 155 14 14 chr12 7547829 7548106 -136238349 + AluJo SINE Alu 16 292 -20 258 299 17 51 chr12 7548582 7548699 -136237756 - MIR SINE MIR -142 120 8 1848 133 13 33 chr12 7550345 7550645 -136235810 + AluJo SINE Alu 1 294 -18 399 318 165 34 chr12 7551211 7551532 -136234923 - L2 LINE L2 -2 3311 2949 187 325 114 44 chr12 7551544 7551658 -136234797 + L3 LINE CR1 1454 1575 -2 900 140 0 22 chr12 7552078 7552214 -136234241 + FLAM_C SINE Alu 1 133 0 2243 74 0 14 chr12 7552987 7553296 -136233159 - AluSc SINE Alu 0 305 1 748 138 0 9 chr12 7555476 7555585 -136230870 - FLAM_C SINE Alu -33 110 3 237 254 0 167 chr12 7556225 7556363 -136230092 - MIR SINE MIR -61 147 33 2391 55 0 0 chr12 7557749 7558040 -136228415 + AluY SINE Alu 1 291 -20 963 100 0 23 chr12 7558774 7558904 -136227551 - FLAM_C SINE Alu -6 127 1 706 226 45 23 chr12 7558906 7559083 -136227372 + MER58A DNA MER1_type 42 222 -2 220 215 0 75 chr12 7560731 7560824 -136225631 + G-rich Low_complexity Low_complexity 4 89 0 26 0 0 0 chr12 7561048 7561074 -136225381 + GC_rich Low_complexity Low_complexity 1 26 0 302 261 99 21 chr12 7563192 7563313 -136223142 - MIR SINE MIR -60 148 23 201 283 17 17 chr12 7567380 7567440 -136219015 + MIR SINE MIR 45 104 -104 1254 113 9 75 chr12 7567444 7567625 -136218830 - AluJo SINE Alu -10 302 135 2170 117 7 0 chr12 7567625 7567932 -136218523 - AluSq SINE Alu -4 309 1 1254 113 9 75 chr12 7567932 7567963 -136218492 - AluJo SINE Alu -177 135 104 277 129 0 17 chr12 7567963 7568023 -136218432 - Alu SINE Alu -260 42 1 445 257 46 0 chr12 7568029 7568138 -136218317 + MIR SINE MIR 134 247 -15 749 294 37 5 chr12 7568183 7568401 -136218054 + MIR SINE MIR 2 226 -36 2128 99 20 3 chr12 7568666 7568960 -136217495 - AluSg SINE Alu -11 299 1 458 328 93 68 chr12 7569049 7569301 -136217154 - L2 LINE L2 -341 2973 2729 1230 184 3 108 chr12 7569301 7569633 -136216822 - AluY SINE Alu -14 297 1 458 328 93 68 chr12 7569633 7569704 -136216751 - L2 LINE L2 -585 2729 2661 2388 80 3 0 chr12 7569704 7570004 -136216451 + AluSp SINE Alu 1 301 -12 458 328 93 68 chr12 7570004 7570149 -136216306 - L2 LINE L2 -653 2661 2521 2370 93 0 0 chr12 7570149 7570459 -136215996 + AluSx SINE Alu 1 310 -2 458 328 93 68 chr12 7570459 7570801 -136215654 - L2 LINE L2 -793 2521 2140 1263 122 102 86 chr12 7571029 7571162 -136215293 + AluSg1 SINE Alu 1 130 -179 1977 94 54 27 chr12 7571162 7571460 -136214995 + AluSx SINE Alu 1 306 -6 1594 81 0 0 chr12 7571462 7571660 -136214795 + AluSx SINE Alu 1 198 -114 1263 122 102 86 chr12 7571660 7571780 -136214675 + AluSg1 SINE Alu 130 265 -44 195 42 0 0 chr12 7571780 7571804 -136214651 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1263 122 102 86 chr12 7571804 7571850 -136214605 + AluSg1 SINE Alu 265 309 0 2112 82 0 0 chr12 7571853 7572121 -136214334 + AluSp SINE Alu 44 311 -2 504 0 0 0 chr12 7572186 7572242 -136214213 + (TA)n Simple_repeat Simple_repeat 1 56 0 1878 119 20 3 chr12 7572278 7572572 -136213883 + L1PB1 LINE L1 5853 6151 0 1782 147 14 7 chr12 7572688 7572981 -136213474 + AluSx SINE Alu 1 295 -17 234 62 0 0 chr12 7573113 7573145 -136213310 + (CTG)n Simple_repeat Simple_repeat 1 32 0 2193 96 0 10 chr12 7573166 7573467 -136212988 + AluSx SINE Alu 1 298 -14 36 23 0 0 chr12 7573561 7573604 -136212851 + AT_rich Low_complexity Low_complexity 1 43 0 2316 66 0 26 chr12 7573604 7573909 -136212546 + AluY SINE Alu 1 297 -14 706 183 0 9 chr12 7573909 7574024 -136212431 - FLAM_A SINE Alu -15 118 5 1515 154 108 7 chr12 7574024 7574303 -136212152 - AluJo SINE Alu -5 307 1 1686 166 3 22 chr12 7574304 7574617 -136211838 - AluJb SINE Alu -5 307 1 633 244 74 33 chr12 7574658 7574776 -136211679 - L1ME3 LINE L1 -1 6161 6049 1605 149 52 17 chr12 7574776 7575064 -136211391 + AluJo SINE Alu 1 298 -14 2520 21 0 0 chr12 7575064 7575387 -136211068 + AluY SINE Alu 1 323 0 633 244 74 33 chr12 7575387 7575508 -136210947 - L1ME3 LINE L1 -112 6050 5910 666 203 182 0 chr12 7575517 7575660 -136210795 + FRAM SINE Alu 1 40 0 497 234 110 48 chr12 7575664 7575808 -136210647 - L1ME3 LINE L1 -258 5912 5748 2010 134 7 0 chr12 7575808 7576098 -136210357 - AluSx SINE Alu -20 292 1 497 234 110 48 chr12 7576098 7576180 -136210275 - L1ME3 LINE L1 -422 5748 5672 356 127 0 0 chr12 7576263 7576318 -136210137 + MER101 LTR ERV1 403 457 -17 1131 194 23 81 chr12 7576318 7576432 -136210023 + AluJo SINE Alu 21 140 -172 2101 76 4 0 chr12 7576432 7576696 -136209759 - AluSp SINE Alu -48 265 1 1131 194 23 81 chr12 7576696 7576891 -136209564 + AluJo SINE Alu 140 312 0 287 223 12 56 chr12 7576908 7577015 -136209440 - L1ME3 LINE L1 -470 5700 5598 276 270 10 40 chr12 7578138 7578238 -136208217 - L2 LINE L2 -967 2347 2251 2169 92 7 0 chr12 7578696 7578989 -136207466 - AluSg SINE Alu -15 295 1 7902 58 7 0 chr12 7579201 7580163 -136206292 - LTR5 LTR ERVK 0 969 1 249 108 0 0 chr12 7580191 7580228 -136206227 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 1938 143 3 10 chr12 7580231 7580545 -136205910 + AluSx SINE Alu 1 312 0 657 240 40 23 chr12 7580741 7580916 -136205539 - FRAM SINE Alu 0 176 1 342 329 53 74 chr12 7580919 7581028 -136205427 - Tigger7 DNA MER2_type -808 1679 1569 1960 121 3 58 chr12 7581028 7581358 -136205097 + AluSx SINE Alu 1 312 0 342 329 53 74 chr12 7581358 7581426 -136205029 - Tigger7 DNA MER2_type -918 1569 1501 1559 160 56 4 chr12 7581426 7581730 -136204725 - AluJb SINE Alu 0 318 1 342 329 53 74 chr12 7581730 7582128 -136204327 - Tigger7 DNA MER2_type -986 1501 1113 1795 131 31 0 chr12 7582128 7582418 -136204037 - AluSx SINE Alu -8 304 6 342 329 53 74 chr12 7582418 7582447 -136204008 - Tigger7 DNA MER2_type -1374 1113 1085 2103 106 7 0 chr12 7582684 7582976 -136203479 - AluSg SINE Alu -16 294 1 789 196 0 72 chr12 7583227 7583436 -136203019 - AluJo SINE Alu -1 311 118 2318 93 0 0 chr12 7583458 7583768 -136202687 - AluSq SINE Alu -3 310 1 332 315 161 0 chr12 7584211 7584341 -136202114 - MIR SINE MIR -71 191 41 257 169 0 101 chr12 7584414 7584503 -136201952 + (CCCCG)n Simple_repeat Simple_repeat 3 82 0 866 173 18 30 chr12 7585149 7585317 -136201138 + FRAM SINE Alu 1 164 -12 2087 114 10 0 chr12 7585394 7585702 -136200753 - AluSx SINE Alu -1 311 1 956 176 0 0 chr12 7585901 7586060 -136200395 + AluJb SINE Alu 137 295 -17 280 233 33 0 chr12 7586061 7586121 -136200334 - L2 LINE L2 -18 3295 3234 1820 151 23 7 chr12 7586146 7586451 -136200004 + AluJo SINE Alu 1 310 -2 196 246 18 18 chr12 7586479 7586536 -136199919 - L2 LINE L2 -848 2466 2410 2060 113 7 0 chr12 7586545 7586837 -136199618 + AluSq SINE Alu 1 294 -19 203 152 0 0 chr12 7586856 7586889 -136199566 + (CA)n Simple_repeat Simple_repeat 2 34 0 2142 121 0 6 chr12 7586985 7587299 -136199156 + AluSx SINE Alu 1 312 0 1990 164 44 19 chr12 7587657 7588023 -136198432 + THE1C LTR MaLR 1 375 0 1679 178 28 0 chr12 7588324 7588446 -136198009 + AluJb SINE Alu 1 118 -194 192 40 0 0 chr12 7588446 7588471 -136197984 + (CA)n Simple_repeat Simple_repeat 2 26 0 1679 178 28 0 chr12 7588471 7588635 -136197820 + AluJb SINE Alu 118 295 -17 2357 74 3 16 chr12 7588641 7588953 -136197502 + AluSq SINE Alu 1 308 -5 1368 180 24 45 chr12 7588953 7589242 -136197213 + AluJo SINE Alu 1 283 -29 1596 143 66 30 chr12 7589242 7589357 -136197098 + AluSx SINE Alu 1 110 -202 432 0 0 0 chr12 7589357 7589405 -136197050 + (CTA)n Simple_repeat Simple_repeat 1 48 0 1596 143 66 30 chr12 7589405 7589590 -136196865 + AluSx SINE Alu 110 312 0 271 274 35 0 chr12 7589622 7589735 -136196720 + L1M4 LINE L1 4735 4851 -1295 451 312 138 18 chr12 7589745 7590078 -136196377 + L1M4 LINE L1 4877 5249 -897 2568 158 164 8 chr12 7590094 7590583 -136195872 + MLT1F1 LTR MaLR 1 565 -2 1332 146 23 151 chr12 7590596 7590946 -136195509 + AluYb8 SINE Alu 1 305 -3 2269 91 0 0 chr12 7591330 7591627 -136194828 + AluSc SINE Alu 1 297 -12 2289 100 0 0 chr12 7591631 7591932 -136194523 + AluSq SINE Alu 1 301 -12 1855 151 7 10 chr12 7591971 7592139 -136194316 - AluSx SINE Alu -9 303 136 260 0 0 54 chr12 7592139 7592176 -136194279 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1757 108 17 45 chr12 7592176 7592464 -136193991 - AluSg SINE Alu -30 280 1 1855 151 7 10 chr12 7592464 7592598 -136193857 - AluSx SINE Alu -174 138 1 1497 153 0 34 chr12 7592679 7592947 -136193508 + AluJo SINE Alu 2 260 -52 226 244 0 0 chr12 7592982 7593027 -136193428 + MER5A DNA MER1_type 9 53 -136 650 177 0 9 chr12 7593203 7593316 -136193139 + FRAM SINE Alu 1 104 -72 1831 210 78 12 chr12 7593320 7593744 -136192711 + MER66A LTR ERV1 27 478 0 1607 168 82 25 chr12 7593776 7593870 -136192585 - MER51A LTR ERV1 0 634 547 1521 86 70 45 chr12 7593870 7594114 -136192341 - AluSg SINE Alu -6 304 55 1607 168 82 25 chr12 7594114 7594425 -136192030 - MER51A LTR ERV1 -87 547 225 404 73 0 0 chr12 7594429 7594484 -136191971 - MER51A LTR ERV1 -578 56 2 262 208 0 0 chr12 7594485 7594533 -136191922 + FLAM_A SINE Alu 85 132 -1 2467 48 0 22 chr12 7594536 7594852 -136191603 + AluY SINE Alu 3 311 0 2130 113 0 0 chr12 7595018 7595319 -136191136 - AluSx SINE Alu -11 301 1 1156 118 0 0 chr12 7595319 7595480 -136190975 - AluSg/x SINE Alu -18 292 132 2173 78 20 3 chr12 7595480 7595774 -136190681 - AluSq SINE Alu -14 299 1 189 301 0 24 chr12 7596116 7596199 -136190256 + MIR SINE MIR 182 262 0 1993 144 0 6 chr12 7596342 7596655 -136189800 + AluJo SINE Alu 1 311 -1 570 332 18 9 chr12 7596930 7597147 -136189308 - MIR SINE MIR -21 241 23 314 231 128 13 chr12 7597403 7597538 -136188917 + MIR SINE MIR 100 256 -6 240 302 0 0 chr12 7599026 7599089 -136187366 + GA-rich Low_complexity Low_complexity 2 64 0 730 284 62 37 chr12 7600104 7600425 -136186030 - L2 LINE L2 0 3313 2985 213 260 27 14 chr12 7600804 7600877 -136185578 + MIR3 SINE MIR 6 79 -129 2490 176 97 36 chr12 7601062 7601586 -136184869 - MER21A LTR ERV1 0 931 376 973 149 63 115 chr12 7601592 7601656 -136184799 - MER21A LTR ERV1 -668 263 197 2306 92 0 0 chr12 7601656 7601962 -136184493 + AluSx SINE Alu 1 306 -6 1612 65 0 28 chr12 7601971 7602185 -136184270 + AluY SINE Alu 94 301 -10 973 149 63 115 chr12 7602185 7602379 -136184076 - MER21A LTR ERV1 -742 189 9 314 278 46 53 chr12 7602379 7602530 -136183925 + L1MCa LINE L1 1942 2091 -4335 * 389 292 61 37 chr12 7602395 7602913 -136183542 - L1MC5 LINE L1 -182 8059 1970 356 347 0 16 chr12 7603559 7603643 -136182812 - L2 LINE L2 -1 3271 3188 1547 146 38 89 chr12 7603643 7603768 -136182687 + AluJo SINE Alu 1 131 -181 1773 168 3 13 chr12 7603768 7604083 -136182372 + AluJb SINE Alu 1 312 0 1547 146 38 89 chr12 7604083 7604272 -136182183 + AluJo SINE Alu 131 299 -13 356 347 0 16 chr12 7604272 7604311 -136182144 - L2 LINE L2 -84 3188 3150 261 228 215 0 chr12 7604867 7604946 -136181509 + MER20B DNA MER1_type 68 163 -620 1726 159 20 7 chr12 7605069 7605364 -136181091 + AluJo SINE Alu 3 301 -11 948 136 28 40 chr12 7605533 7605709 -136180746 - AluJo SINE Alu -54 258 85 2250 101 0 0 chr12 7606897 7607204 -136179251 - AluSc SINE Alu -2 307 1 230 222 0 25 chr12 7607900 7607981 -136178474 + (CCG)n Simple_repeat Simple_repeat 1 79 0 222 333 11 11 chr12 7610564 7610651 -136175804 + L3b LINE CR1 1303 1389 -194 2269 42 42 3 chr12 7611695 7611980 -136174475 - AluY SINE Alu -15 296 1 2428 66 0 0 chr12 7612041 7612345 -136174110 + AluSx SINE Alu 1 304 -8 305 233 214 53 chr12 7612505 7612711 -136173744 + MIR SINE MIR 3 241 -21 534 306 31 0 chr12 7613462 7613684 -136172771 + L3b LINE CR1 1190 1418 -165 2290 93 3 3 chr12 7613728 7614040 -136172415 - AluSp SINE Alu -1 312 1 957 119 0 7 chr12 7614058 7614201 -136172254 - FLAM_C SINE Alu -1 142 1 1244 118 165 9 chr12 7614207 7614419 -136172036 - AluSx SINE Alu -67 245 1 1671 181 14 0 chr12 7614453 7614746 -136171709 + AluJb SINE Alu 1 297 -15 200 33 0 33 chr12 7616629 7616659 -136169796 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 336 48 0 0 chr12 7618441 7618483 -136167972 + (TG)n Simple_repeat Simple_repeat 1 42 0 2110 85 20 0 chr12 7619815 7620109 -136166346 - AluSx SINE Alu -12 300 1 248 214 10 61 chr12 7620920 7621071 -136165384 + CT-rich Low_complexity Low_complexity 1 143 0 196 98 24 24 chr12 7621078 7621119 -136165336 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 310 201 12 67 chr12 7621280 7621498 -136164957 + (CGGGG)n Simple_repeat Simple_repeat 1 206 0 25 51 0 0 chr12 7621559 7621598 -136164857 + GC_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr12 7621734 7621763 -136164692 + GC_rich Low_complexity Low_complexity 1 29 0 499 232 120 14 chr12 7623391 7623533 -136162922 + MIR3 SINE MIR 20 176 -32 2235 45 0 21 chr12 7623854 7624141 -136162314 + AluY SINE Alu 1 281 -30 271 0 0 0 chr12 7624141 7624171 -136162284 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 198 0 0 0 chr12 7624750 7624772 -136161683 + (A)n Simple_repeat Simple_repeat 1 22 0 2341 99 0 3 chr12 7624772 7625086 -136161369 + AluSq SINE Alu 1 313 0 2399 80 3 3 chr12 7625092 7625404 -136161051 + AluSq SINE Alu 1 312 -1 698 266 76 25 chr12 7626298 7626535 -136159920 + MIR SINE MIR 1 249 -13 1901 118 90 0 chr12 7626551 7626830 -136159625 - AluSg SINE Alu -6 304 1 2085 124 16 0 chr12 7628221 7628528 -136157927 - AluSx SINE Alu 0 312 1 223 239 0 0 chr12 7629761 7629807 -136156648 + CT-rich Low_complexity Low_complexity 2 47 0 489 34 0 0 chr12 7630057 7630116 -136156339 + (CAG)n Simple_repeat Simple_repeat 1 59 0 228 67 0 0 chr12 7631463 7631493 -136154962 + (CGCTG)n Simple_repeat Simple_repeat 4 33 0 2034 129 0 7 chr12 7632841 7633144 -136153311 - AluJb SINE Alu -11 301 1 2151 86 0 33 chr12 7633328 7633630 -136152825 - AluSc SINE Alu -17 292 1 1905 112 0 7 chr12 7633639 7633908 -136152547 - AluSx SINE Alu -45 267 1 190 370 50 42 chr12 7634518 7634637 -136151818 + MIR SINE MIR 20 139 -123 23 0 0 0 chr12 7635566 7635589 -136150866 + AT_rich Low_complexity Low_complexity 1 23 0 1414 160 141 0 chr12 7635932 7636194 -136150261 + AluJo SINE Alu 3 301 -1 2026 108 7 7 chr12 7636364 7636660 -136149795 + AluSg SINE Alu 1 296 -14 536 32 0 0 chr12 7637157 7637219 -136149236 + U7 snRNA snRNA 2 63 0 1802 131 93 44 chr12 7638192 7638535 -136147920 - MER46B DNA MER2_type -1 235 1 1158 286 52 50 chr12 7640522 7640728 -136145727 - L2 LINE L2 -2 3311 3107 2010 138 7 3 chr12 7640728 7641033 -136145422 + AluJo SINE Alu 1 306 -6 1158 286 52 50 chr12 7641033 7641270 -136145185 - L2 LINE L2 -206 3107 2867 831 126 0 0 chr12 7641354 7641473 -136144982 + AluJo/FLAM SINE Alu 11 129 -183 1465 196 47 17 chr12 7641475 7641593 -136144862 + AluJb SINE Alu 3 116 -241 204 67 0 0 chr12 7641593 7641623 -136144832 + (CTA)n Simple_repeat Simple_repeat 1 30 0 1465 196 47 17 chr12 7641623 7641850 -136144605 + AluJb SINE Alu 116 357 0 310 293 43 17 chr12 7641851 7641967 -136144488 + L1M4 LINE L1 3073 3191 -2955 2131 102 0 22 chr12 7641999 7642313 -136144142 + AluSg SINE Alu 1 307 -3 571 236 82 32 chr12 7642769 7642989 -136143466 + MIR SINE MIR 2 232 -30 196 355 0 0 chr12 7643010 7643086 -136143369 - MIR SINE MIR -101 161 86 1925 86 119 0 chr12 7643152 7643420 -136143035 - AluSg SINE Alu 0 300 1 246 289 0 0 chr12 7643423 7643499 -136142956 - L1ME3 LINE L1 -68 6094 6019 311 310 113 7 chr12 7643522 7643664 -136142791 - HAL1 LINE L1 -1 2506 2350 896 277 28 16 chr12 7644096 7644345 -136142110 + MIR SINE MIR 9 260 -2 246 310 78 17 chr12 7645791 7645907 -136140548 - L3 LINE CR1 -125 1452 1330 215 365 151 0 chr12 7646363 7646522 -136139933 - L3 LINE CR1 -809 768 586 601 100 89 0 chr12 7647784 7647874 -136138581 + AluJb SINE Alu 172 269 -43 557 247 25 19 chr12 7647903 7648061 -136138394 + MIR SINE MIR 87 245 -17 223 336 103 54 chr12 7650427 7650778 -136135677 + L2 LINE L2 2899 3266 -6 308 244 26 0 chr12 7650792 7650870 -136135585 - MIR SINE MIR -98 110 31 537 186 150 0 chr12 7652126 7652239 -136134216 + MIR SINE MIR 63 192 -70 272 345 59 8 chr12 7653907 7654026 -136132429 - L2 LINE L2 -5 3267 3143 633 268 141 42 chr12 7654920 7655133 -136131322 - MIR SINE MIR -13 249 16 2133 102 3 13 chr12 7660083 7660388 -136126067 - AluSx SINE Alu -10 302 1 216 188 0 62 chr12 7661364 7661428 -136125027 + G-rich Low_complexity Low_complexity 4 63 0 200 259 69 0 chr12 7662692 7662750 -136123705 - MIR SINE MIR -90 172 111 2451 53 3 0 chr12 7662958 7663258 -136123197 + AluSx SINE Alu 1 301 -11 2285 87 0 6 chr12 7664604 7664915 -136121540 - AluSx SINE Alu -3 309 1 1105 86 7 0 chr12 7665406 7665558 -136120897 - AluSc SINE Alu -10 299 147 1695 173 13 16 chr12 7666173 7666479 -136119976 - AluJb SINE Alu -7 305 1 1828 159 48 0 chr12 7666518 7666807 -136119648 - AluSx SINE Alu -9 303 1 2208 61 46 0 chr12 7666901 7667181 -136119274 - AluY SINE Alu -18 293 1 706 166 70 0 chr12 7667475 7667623 -136118832 - MER5A DNA MER1_type -17 161 3 2140 100 7 0 chr12 7669782 7670071 -136116384 + AluSx SINE Alu 1 291 -21 195 299 154 0 chr12 7671310 7671427 -136115028 - L2 LINE L2 -43 3229 3095 1732 158 16 41 chr12 7673362 7673678 -136112777 - AluJo SINE Alu 0 312 5 1721 160 7 27 chr12 7673702 7673995 -136112460 - AluJo SINE Alu -25 287 1 255 103 0 0 chr12 7673996 7674035 -136112420 + (CCTA)n Simple_repeat Simple_repeat 1 39 0 461 105 132 0 chr12 7675458 7675534 -136110921 - AluJb SINE Alu -142 170 85 974 128 0 14 chr12 7675536 7675677 -136110778 - AluJb SINE Alu -173 139 1 192 357 43 0 chr12 7675866 7675936 -136110519 - MIR SINE MIR -102 106 34 24 32 0 0 chr12 7676266 7676297 -136110158 + AT_rich Low_complexity Low_complexity 1 31 0 563 168 19 0 chr12 7676310 7676417 -136110038 - FRAM SINE Alu -1 175 67 822 149 0 43 chr12 7677199 7677340 -136109115 + AluJo SINE Alu 1 135 -177 1992 134 7 7 chr12 7677922 7678220 -136108235 - AluJo SINE Alu -11 301 4 180 0 0 0 chr12 7678428 7678448 -136108007 + (A)n Simple_repeat Simple_repeat 1 20 0 2414 70 3 16 chr12 7678448 7678762 -136107693 + AluY SINE Alu 1 310 -1 2167 92 3 50 chr12 7678773 7679090 -136107365 + AluSx SINE Alu 6 307 -5 2160 117 13 0 chr12 7679102 7679400 -136107055 + AluSq SINE Alu 1 302 -11 314 243 0 0 chr12 7679400 7679470 -136106985 + Tigger2 DNA MER2_type 2649 2718 0 249 268 0 0 chr12 7679507 7679563 -136106892 - L2 LINE L2 0 3272 3217 21 0 0 0 chr12 7679871 7679892 -136106563 + AT_rich Low_complexity Low_complexity 1 21 0 2338 61 27 10 chr12 7681114 7681408 -136105047 + AluSp SINE Alu 1 299 -14 2415 32 56 3 chr12 7681583 7681867 -136104588 - AluY SINE Alu -12 299 1 1816 148 0 48 chr12 7682160 7682493 -136103962 + AluJo SINE Alu 1 312 0 2452 69 0 0 chr12 7682497 7682788 -136103667 + AluY SINE Alu 1 291 -20 360 0 0 0 chr12 7682796 7682836 -136103619 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4574 165 74 42 chr12 7682836 7682912 -136103543 - Charlie1a DNA MER1_type -1355 1406 1334 2137 128 20 0 chr12 7682912 7683216 -136103239 + AluSx SINE Alu 3 312 0 4574 165 74 42 chr12 7683216 7684185 -136102270 - Charlie1a DNA MER1_type -1427 1334 324 1059 133 33 0 chr12 7684187 7684337 -136102118 + AluSx SINE Alu 4 158 -154 1034 161 124 0 chr12 7684393 7684425 -136102030 + AluJb SINE Alu 87 114 -198 221 0 0 33 chr12 7684425 7684455 -136102000 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1034 161 124 0 chr12 7684455 7684615 -136101840 + AluJb SINE Alu 114 303 -9 1483 198 32 18 chr12 7684615 7684898 -136101557 - Charlie1a DNA MER1_type -1159 296 10 1172 167 39 10 chr12 7685040 7685244 -136101211 + MER2 DNA MER2_type 1 210 -135 27 29 0 0 chr12 7685244 7685278 -136101177 + AT_rich Low_complexity Low_complexity 1 34 0 288 171 0 0 chr12 7685283 7685324 -136101131 + MER2 DNA MER2_type 304 344 -1 2394 151 15 96 chr12 7685347 7685428 -136101027 - L1MB7 LINE L1 -16 6168 6082 2283 92 14 0 chr12 7685428 7685720 -136100735 + AluSc SINE Alu 2 297 -12 2394 151 15 96 chr12 7685720 7686058 -136100397 - L1MB7 LINE L1 -102 6082 5797 819 179 0 0 chr12 7686058 7686181 -136100274 - FLAM_C SINE Alu -10 123 1 2394 151 15 96 chr12 7686181 7686283 -136100172 - L1MB7 LINE L1 -387 5797 5688 768 146 0 0 chr12 7686283 7686393 -136100062 - FLAM_C SINE Alu -20 123 14 460 88 0 100 chr12 7686395 7686475 -136099980 - L1M4 LINE L1 -493 5691 5620 2205 118 0 0 chr12 7686475 7686771 -136099684 - AluSx SINE Alu -10 302 7 1575 161 47 0 chr12 7686771 7687024 -136099431 - AluJb SINE Alu -46 266 1 254 350 97 32 chr12 7687119 7687466 -136098989 + L2 LINE L2 2100 2423 -891 2377 82 0 3 chr12 7687466 7687758 -136098697 + AluSg SINE Alu 5 295 -15 254 350 97 32 chr12 7687758 7687832 -136098623 + L2 LINE L2 2423 2491 -823 195 100 0 0 chr12 7687832 7687862 -136098593 + (CACCAT)n Simple_repeat Simple_repeat 6 35 0 254 350 97 32 chr12 7687862 7687973 -136098482 + L2 LINE L2 2491 2668 -646 822 232 103 91 chr12 7688046 7688850 -136097605 + L2 LINE L2 2503 3306 -7 256 264 0 42 chr12 7688887 7688959 -136097496 - L2 LINE L2 -7 3306 3238 542 135 0 11 chr12 7689362 7689451 -136097004 - Charlie2 DNA MER1_type -4 2858 2771 1065 186 0 0 chr12 7689458 7689630 -136096825 - AluJb SINE Alu -1 311 140 441 0 0 0 chr12 7689649 7689698 -136096757 + (TG)n Simple_repeat Simple_repeat 2 50 0 1777 124 33 40 chr12 7689702 7689850 -136096605 - AluSx SINE Alu -31 281 134 2419 88 3 0 chr12 7689850 7690155 -136096300 - AluSp SINE Alu -7 306 1 1777 124 33 40 chr12 7690155 7690279 -136096176 - AluSx SINE Alu -178 134 11 1748 196 0 0 chr12 7690299 7690585 -136095870 - AluJo SINE Alu -26 286 1 271 161 306 0 chr12 7690629 7690691 -136095764 - Charlie2a DNA MER1_type -1258 1604 1524 391 306 90 0 chr12 7691103 7691247 -136095208 - MIR3 SINE MIR -35 173 17 2389 92 0 3 chr12 7692183 7692489 -136093966 - AluY SINE Alu -6 305 1 545 117 161 95 chr12 7692662 7692799 -136093656 + MER69 DNA AcHobo 2 147 -2379 395 183 0 0 chr12 7692793 7692864 -136093591 + MER69 DNA AcHobo 2447 2517 -9 * 2401 87 0 0 chr12 7694211 7694509 -136091946 + AluSg SINE Alu 1 298 -12 254 180 0 38 chr12 7694951 7695011 -136091444 - FLAM SINE Alu -9 124 76 2921 16 0 0 chr12 7695123 7695436 -136091019 + AluYb8 SINE Alu 1 313 -5 850 252 52 20 chr12 7695794 7696044 -136090411 - MIR SINE MIR -2 260 3 224 299 31 16 chr12 7696227 7696354 -136090101 + L2 LINE L2 2687 2815 -499 4782 137 46 28 chr12 7696431 7697417 -136089038 - L1MB7 LINE L1 -47 6137 5133 26 64 0 0 chr12 7697487 7697534 -136088921 + AT_rich Low_complexity Low_complexity 1 47 0 1909 133 0 0 chr12 7697738 7698001 -136088454 - AluSx SINE Alu -49 263 1 2317 73 3 26 chr12 7698530 7698833 -136087622 - AluSq SINE Alu -17 296 1 2520 80 0 0 chr12 7698976 7699277 -136087178 - AluSx SINE Alu -11 301 1 1193 123 0 0 chr12 7700089 7700251 -136086204 + AluSg/x SINE Alu 136 297 -13 207 250 19 0 chr12 7700433 7700485 -136085970 + MIR SINE MIR 84 136 -126 2032 109 4 0 chr12 7700577 7700843 -136085612 - AluSx SINE Alu -45 267 1 713 229 47 0 chr12 7700916 7701086 -136085369 - MER5A DNA MER1_type -1 188 11 232 231 46 0 chr12 7701157 7701222 -136085233 - MIR SINE MIR -32 230 163 196 293 10 61 chr12 7701781 7701880 -136084575 + L2 LINE L2 2950 3043 -229 183 80 0 0 chr12 7701893 7701918 -136084537 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 809 196 14 14 chr12 7701918 7702066 -136084389 - AluJb SINE Alu -32 280 133 967 211 0 0 chr12 7702328 7702489 -136083966 - FRAM SINE Alu -20 156 1 1614 173 3 63 chr12 7702499 7702817 -136083638 - AluJb SINE Alu -13 299 1 2003 157 3 10 chr12 7702845 7703158 -136083297 + AluJb SINE Alu 1 311 -1 222 280 0 0 chr12 7703252 7703302 -136083153 - L3 LINE CR1 -11 1566 1517 285 318 20 34 chr12 7703865 7704013 -136082442 + MIR SINE MIR 100 245 -17 367 231 13 0 chr12 7704013 7704091 -136082364 - MER5A DNA MER1_type -100 89 11 232 231 46 0 chr12 7704162 7704227 -136082228 - MIR SINE MIR -32 230 163 196 293 10 61 chr12 7704786 7704885 -136081570 + L2 LINE L2 2950 3043 -229 183 80 0 0 chr12 7704898 7704923 -136081532 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 809 196 14 14 chr12 7704923 7705071 -136081384 - AluJb SINE Alu -32 280 133 967 211 0 0 chr12 7705333 7705494 -136080961 - FRAM SINE Alu -20 156 1 1658 172 0 63 chr12 7705504 7705823 -136080632 - AluJb SINE Alu -13 299 1 1995 157 3 10 chr12 7705851 7706163 -136080292 + AluJb SINE Alu 1 310 -2 222 280 0 0 chr12 7706257 7706307 -136080148 - L3 LINE CR1 -11 1566 1517 358 315 18 30 chr12 7706870 7707035 -136079420 + MIR SINE MIR 100 262 0 578 298 207 15 chr12 7707417 7708114 -136078341 - L2 LINE L2 0 3272 2431 253 293 116 63 chr12 7708137 7708550 -136077905 + L2 LINE L2 2521 2955 -359 2188 86 6 48 chr12 7709087 7709401 -136077054 + AluSc SINE Alu 1 301 -8 600 178 30 54 chr12 7709410 7709610 -136076845 - MER112 DNA MER1_type 0 260 1 1375 169 92 18 chr12 7710586 7710752 -136075703 - AluJb SINE Alu -15 297 102 2218 125 0 6 chr12 7710752 7711063 -136075392 - AluSx SINE Alu -3 309 1 1375 169 92 18 chr12 7711063 7711169 -136075286 - AluJb SINE Alu -210 102 5 410 328 64 12 chr12 7711808 7711979 -136074476 - MIR SINE MIR -80 182 3 23 0 0 0 chr12 7713357 7713380 -136073075 + GC_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr12 7713672 7713704 -136072751 + AT_rich Low_complexity Low_complexity 1 32 0 248 246 18 0 chr12 7713840 7713897 -136072558 - L2 LINE L2 -12 3301 3244 224 321 120 11 chr12 7714113 7714297 -136072158 - MIR SINE MIR -40 222 19 1835 153 13 23 chr12 7714567 7714867 -136071588 + AluJb SINE Alu 1 297 -15 1556 85 0 10 chr12 7714879 7715079 -136071376 + AluSq SINE Alu 21 218 -95 1448 148 83 105 chr12 7715081 7715539 -136070916 - LTR7 LTR ERV1 -2 448 1 652 81 0 0 chr12 7715540 7715627 -136070828 + AluSq SINE Alu 215 301 -12 2319 113 0 0 chr12 7715627 7715927 -136070528 + AluSx SINE Alu 1 300 -12 247 163 61 0 chr12 7715937 7715986 -136070469 + Tigger3(Golem) DNA MER2_type 2568 2619 -410 3447 159 36 62 chr12 7716002 7716049 -136070406 + LTR8A LTR ERV1 34 81 -646 2028 129 14 3 chr12 7716049 7716335 -136070120 - AluSx SINE Alu -23 289 1 3447 159 36 62 chr12 7716335 7716999 -136069456 + LTR8A LTR ERV1 81 727 0 1559 115 3 92 chr12 7716999 7717144 -136069311 + Tigger3(Golem) DNA MER2_type 2618 2724 -305 2322 81 10 10 chr12 7717144 7717442 -136069013 - AluSp SINE Alu -15 298 1 1559 115 3 92 chr12 7717442 7717601 -136068854 + Tigger3(Golem) DNA MER2_type 2724 2895 -134 4132 142 63 8 chr12 7717607 7718274 -136068181 + MER72 LTR ERV1 5 708 -14 3751 168 31 0 chr12 7718274 7718970 -136067485 + ERVL-B1 LTR ERVL 627 1390 -4374 592 227 8 0 chr12 7718970 7719102 -136067353 + FLAM_C SINE Alu 1 133 -10 2102 98 9 60 chr12 7719110 7719427 -136067028 + AluSx SINE Alu 1 301 -11 1838 133 20 25 chr12 7719443 7719790 -136066665 - MER4A LTR ERV1 0 664 261 618 84 53 21 chr12 7719790 7719885 -136066570 - MER4A LTR ERV1 -566 98 1 2050 123 17 0 chr12 7719894 7720196 -136066259 - AluSx SINE Alu -5 307 1 2237 64 3 0 chr12 7720210 7720528 -136065927 - AluY SINE Alu 0 319 1 6840 93 64 14 chr12 7720528 7721622 -136064833 - MER4-int LTR ERV1 -1283 5315 4167 2161 104 7 0 chr12 7721637 7721934 -136064521 - AluSp SINE Alu -14 299 1 1332 144 0 111 chr12 7721938 7722051 -136064404 + ERVL-B1 LTR ERVL 2583 2650 -3114 1422 138 8 175 chr12 7722051 7722406 -136064049 - AluJb SINE Alu -16 296 1 1332 144 0 111 chr12 7722406 7722562 -136063893 + ERVL-B1 LTR ERVL 2650 2822 -2942 3352 151 14 35 chr12 7722607 7722634 -136063821 + ERVL-B1 LTR ERVL 2796 2822 -2942 2241 79 3 0 chr12 7722634 7722926 -136063529 - AluSg SINE Alu -17 293 1 3352 151 14 35 chr12 7722926 7723434 -136063021 + ERVL-B1 LTR ERVL 2822 3321 -2443 1741 148 0 59 chr12 7723434 7723758 -136062697 - AluJb SINE Alu -7 305 1 3352 151 14 35 chr12 7723758 7723784 -136062671 + ERVL-B1 LTR ERVL 3321 3346 -2418 2233 62 0 34 chr12 7723789 7724121 -136062334 - AluY SINE Alu 0 322 1 1667 143 0 26 chr12 7724160 7724393 -136062062 + ERVL-B1 LTR ERVL 3334 3561 -2203 2420 60 3 0 chr12 7724393 7724693 -136061762 + AluSp SINE Alu 1 301 -12 1667 143 0 26 chr12 7724693 7724724 -136061731 + ERVL-B1 LTR ERVL 3561 3591 -2173 8066 177 65 18 chr12 7724725 7726325 -136060130 - MER52A LTR ERV1 0 1755 1 1058 165 110 0 chr12 7726325 7726525 -136059930 + ERVL-B1 LTR ERVL 3589 3810 -1954 22 0 0 0 chr12 7726525 7726547 -136059908 + AT_rich Low_complexity Low_complexity 1 22 0 1925 164 6 3 chr12 7726991 7727303 -136059152 - LTR26 LTR ERV1 0 603 291 240 103 179 0 chr12 7727376 7727415 -136059040 - LTR26 LTR ERV1 -269 334 289 244 139 23 0 chr12 7727431 7727474 -136058981 - LTR26 LTR ERV1 -269 334 291 226 67 0 0 chr12 7727582 7727612 -136058843 - LTR26 LTR ERV1 -283 320 291 232 67 0 0 chr12 7727912 7727942 -136058513 - LTR26 LTR ERV1 -283 320 291 396 154 0 110 chr12 7728076 7728167 -136058288 - LTR26 LTR ERV1 -283 320 240 827 170 0 27 chr12 7728168 7728315 -136058140 - FLAM_C SINE Alu 0 143 1 1295 142 50 0 chr12 7728315 7728533 -136057922 - LTR26 LTR ERV1 -355 248 20 465 206 28 0 chr12 7728534 7728641 -136057814 - FLAM_A SINE Alu -21 121 12 11415 149 18 43 chr12 7728650 7730257 -136056198 + ERVL-B1 LTR ERVL 3794 5408 -356 263 152 0 106 chr12 7730257 7730323 -136056132 - AluJb SINE Alu -166 136 78 11415 149 18 43 chr12 7730323 7730665 -136055790 + ERVL-B1 LTR ERVL 5408 5757 -7 1423 242 85 0 chr12 7730665 7730995 -136055460 + MLT2B1 LTR ERVL 1 358 -162 1081 87 12 17 chr12 7731007 7731179 -136055276 + HSMAR2 DNA Mariner 1 171 -1131 3762 153 24 128 chr12 7731726 7733263 -136053192 + pTR5 LTR ERV1 743 2606 0 714 236 21 37 chr12 7734103 7734344 -136052111 - L1M4 LINE L1 -868 5278 5042 1525 158 12 67 chr12 7734357 7734528 -136051927 - AluSq SINE Alu -1 312 166 2093 50 0 8 chr12 7734528 7734790 -136051665 - AluY SINE Alu -51 260 1 1525 158 12 67 chr12 7734790 7734948 -136051507 - AluSq SINE Alu -147 166 1 415 289 73 113 chr12 7736291 7736427 -136050028 - HAL1b LINE L1 -993 355 215 198 91 0 0 chr12 7736427 7736460 -136049995 + (TA)n Simple_repeat Simple_repeat 2 34 0 2175 101 0 0 chr12 7736461 7736748 -136049707 - AluSx SINE Alu -21 291 5 415 289 73 113 chr12 7736748 7736979 -136049476 - HAL1b LINE L1 -1132 216 1 3747 175 20 1 chr12 7737162 7737647 -136048808 - L1MC3 LINE L1 0 7785 7282 2017 121 0 19 chr12 7737647 7737961 -136048494 - AluSg SINE Alu -2 308 1 3747 175 20 1 chr12 7737961 7738172 -136048283 - L1MC3 LINE L1 -503 7282 7076 233 200 0 0 chr12 7739221 7739261 -136047194 - Charlie8 DNA MER1_type -1020 1397 1358 272 200 31 0 chr12 7739338 7739403 -136047052 - Charlie8 DNA MER1_type -1922 495 429 2384 77 0 0 chr12 7739403 7739702 -136046753 - AluSx SINE Alu -13 299 1 2418 165 44 2 chr12 7739703 7740110 -136046345 - MSTB LTR MaLR -2 424 1 1114 103 33 27 chr12 7740110 7740294 -136046161 + L1PA16 LINE L1 5981 6165 -1 435 270 56 8 chr12 7740651 7740777 -136045678 + L2 LINE L2 3141 3272 0 718 228 220 20 chr12 7741249 7741499 -136044956 + MLT1J1 LTR MaLR 1 300 -146 706 177 0 15 chr12 7741570 7741700 -136044755 + FLAM_C SINE Alu 4 131 -2 608 245 211 56 chr12 7742112 7742435 -136044020 - MLT1G LTR MaLR -10 585 213 240 111 0 0 chr12 7742447 7742483 -136043972 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 2011 102 14 0 chr12 7742483 7742766 -136043689 - AluY SINE Alu -4 307 21 1078 104 7 7 chr12 7742767 7742921 -136043534 - AluSq SINE Alu -159 154 1 222 91 0 0 chr12 7742942 7742975 -136043480 + (TCTCC)n Simple_repeat Simple_repeat 5 37 0 659 201 32 39 chr12 7742996 7743150 -136043305 - MLT1G LTR MaLR -420 170 18 2352 58 0 16 chr12 7743150 7743460 -136042995 - AluY SINE Alu -6 305 1 19414 174 34 15 chr12 7743468 7743958 -136042497 - L1PA13 LINE L1 -1 6865 6386 1974 108 7 3 chr12 7743958 7744253 -136042202 - AluSq SINE Alu -17 296 1 19414 174 34 15 chr12 7744253 7744379 -136042076 - L1PA13 LINE L1 -480 6386 6264 1718 157 3 23 chr12 7744379 7744684 -136041771 - AluSx SINE Alu -13 299 1 19414 174 34 15 chr12 7744684 7748299 -136038156 - L1PA13 LINE L1 -602 6264 2720 2625 42 0 0 chr12 7748299 7748610 -136037845 + AluY SINE Alu 1 311 0 19414 174 34 15 chr12 7748610 7749111 -136037344 - L1PA13 LINE L1 -4146 2720 2230 1882 167 3 0 chr12 7749111 7749422 -136037033 - AluSx SINE Alu 0 312 1 19414 174 34 15 chr12 7749422 7749735 -136036720 - L1PA13 LINE L1 -4636 2230 1736 537 152 11 0 chr12 7749847 7749939 -136036516 + L1PA12 LINE L1 103 195 -7386 1767 163 10 0 chr12 7750344 7750633 -136035822 - AluJb SINE Alu -20 292 1 1795 159 0 23 chr12 7751327 7751635 -136034820 - AluJo SINE Alu -11 301 1 1463 137 60 12 chr12 7751661 7751910 -136034545 - AluJo SINE Alu -50 262 2 568 237 30 106 chr12 7752154 7752352 -136034103 - MIR SINE MIR -13 249 67 815 255 102 91 chr12 7752420 7752800 -136033655 - LTR67 LTR ERVL 0 557 168 2415 155 73 140 chr12 7752800 7753579 -136032876 + LTR8A LTR ERV1 1 727 0 815 255 102 91 chr12 7753579 7753727 -136032728 - LTR67 LTR ERVL -389 168 23 264 354 19 21 chr12 7753863 7754119 -136032336 - MIR SINE MIR -19 243 23 289 196 36 0 chr12 7754183 7754239 -136032216 + MER46C DNA MER2_type 6 63 -275 851 146 95 0 chr12 7754242 7754400 -136032055 - AluJb SINE Alu -22 290 118 764 222 73 69 chr12 7754402 7754677 -136031778 + MER46C DNA MER2_type 58 333 -5 1800 144 3 7 chr12 7756471 7756770 -136029685 + AluJo SINE Alu 1 298 -14 384 299 94 35 chr12 7757764 7757965 -136028490 - MIR SINE MIR -1 261 49 1639 152 0 31 chr12 7758226 7758515 -136027940 + AluSx SINE Alu 1 280 -32 21 36 0 0 chr12 7758993 7759021 -136027434 + AT_rich Low_complexity Low_complexity 1 28 0 999 159 75 31 chr12 7759027 7759254 -136027201 - L1PB2 LINE L1 0 6151 5915 1530 184 0 46 chr12 7759848 7760153 -136026302 - AluJo SINE Alu -21 291 1 604 183 7 58 chr12 7760532 7760669 -136025786 + FLAM_A SINE Alu 2 131 -2 236 333 35 0 chr12 7762446 7762533 -136023922 - L3 LINE CR1 -27 1550 1461 396 296 99 29 chr12 7763510 7763682 -136022773 - MIR SINE MIR -57 205 22 321 118 0 0 chr12 7765766 7765817 -136020638 + (A)n Simple_repeat Simple_repeat 1 51 0 1135 143 5 21 chr12 7765840 7766029 -136020426 + AluJo SINE Alu 12 197 -115 395 279 43 57 chr12 7966097 7966237 -135820218 + L2 LINE L2 3176 3313 0 465 224 52 9 chr12 7966603 7966719 -135819736 - MLT1I LTR MaLR 0 409 289 299 230 14 14 chr12 7966795 7966869 -135819586 - MLT1J2 LTR MaLR -277 173 100 2158 95 95 104 chr12 7966900 7967332 -135819123 + MSTA LTR MaLR 1 428 0 328 62 31 47 chr12 7967405 7967469 -135818986 + (TTTC)n Simple_repeat Simple_repeat 2 64 0 780 255 0 0 chr12 7967488 7967645 -135818810 - AluJb SINE Alu -20 292 136 342 310 64 32 chr12 7967785 7967972 -135818483 + MIR SINE MIR 65 257 -5 2111 124 0 0 chr12 7968342 7968624 -135817831 - AluSx SINE Alu -2 310 29 814 212 18 12 chr12 7968637 7968807 -135817648 + MER5B DNA MER1_type 8 178 0 1160 284 167 7 chr12 7968809 7969245 -135817210 + L2 LINE L2 2804 3309 -4 449 263 127 0 chr12 7969612 7969730 -135816725 + MIR SINE MIR 28 160 -102 216 335 82 6 chr12 7969916 7970074 -135816381 + L2 LINE L2 1555 1724 -1590 1298 177 9 0 chr12 7970119 7970345 -135816110 - AluJo SINE Alu 0 312 85 776 348 71 40 chr12 7970351 7970932 -135815523 + L2 LINE L2 1774 2372 -942 431 295 8 8 chr12 7970937 7971059 -135815396 + L2 LINE L2 3191 3312 -1 364 273 84 35 chr12 7971253 7971396 -135815059 + MIR SINE MIR 105 254 -8 282 271 124 40 chr12 7971675 7971839 -135814616 - MIR SINE MIR -56 206 30 403 256 176 47 chr12 7972451 7972808 -135813647 - L1MC5 LINE L1 -144 7898 7522 266 256 49 0 chr12 7972856 7972938 -135813517 + L1ME LINE L1 5510 5595 -526 516 279 294 0 chr12 7972969 7973285 -135813170 - L1MC4 LINE L1 -548 7494 7086 42445 41 5 1 chr12 7973380 7979512 -135806943 - L1PA2 LINE L1 0 6155 4 1070 252 39 19 chr12 7979523 7979868 -135806587 - L1MC4 LINE L1 -884 6924 6565 36 0 0 0 chr12 7979868 7979904 -135806551 + AT_rich Low_complexity Low_complexity 1 36 0 432 249 73 4 chr12 7979904 7980075 -135806380 - L1MC4 LINE L1 -784 5362 5211 1211 232 61 7 chr12 7980256 7980566 -135805889 - MER46C DNA MER2_type -10 328 2 2474 100 0 0 chr12 7980611 7980920 -135805535 - AluY SINE Alu 0 311 3 3718 86 125 4 chr12 7981192 7981736 -135804719 - LTR66 LTR ERVL 0 610 1 1729 181 0 14 chr12 7981909 7982215 -135804240 - AluJb SINE Alu 0 312 12 2014 141 0 3 chr12 7982320 7982652 -135803803 - AluSx SINE Alu 0 331 1 2092 115 0 44 chr12 7983246 7983443 -135803012 - AluSx SINE Alu 0 321 141 2505 89 0 3 chr12 7983443 7983756 -135802699 - AluSp SINE Alu -1 312 1 2092 115 0 44 chr12 7983756 7983892 -135802563 - AluSx SINE Alu -180 141 1 621 88 0 0 chr12 7983892 7983983 -135802472 + MER2 DNA MER2_type 120 210 -135 21 0 0 0 chr12 7984006 7984027 -135802428 + AT_rich Low_complexity Low_complexity 1 21 0 452 321 82 25 chr12 7984104 7984422 -135802033 - L2 LINE L2 -1016 2298 1963 200 286 14 54 chr12 7987849 7987996 -135798459 + GA-rich Low_complexity Low_complexity 5 145 0 631 284 68 16 chr12 7990403 7990593 -135795862 + MIR SINE MIR 51 250 -12 297 225 28 0 chr12 7993575 7993646 -135792809 + MIR SINE MIR 43 115 -93 360 0 0 0 chr12 7994189 7994229 -135792226 + (TG)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chr12 7994228 7994255 -135792200 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 237 319 118 21 chr12 7994533 7994677 -135791778 + L2 LINE L2 2328 2485 -829 315 0 0 0 chr12 7994691 7994726 -135791729 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr12 7994726 7994750 -135791705 + (CCA)n Simple_repeat Simple_repeat 3 26 0 801 240 112 0 chr12 7994782 7995024 -135791431 + MER33 DNA MER1_type 1 269 -55 294 314 95 45 chr12 7995036 7995158 -135791297 + L2 LINE L2 2511 2626 -688 859 143 8 15 chr12 7995158 7995291 -135791164 - FLAM_C SINE Alu 0 133 2 294 314 95 45 chr12 7995291 7995410 -135791045 + L2 LINE L2 2626 2764 -550 2041 152 0 0 chr12 7996036 7996338 -135790117 + AluSx SINE Alu 1 302 -10 273 98 0 0 chr12 7999124 7999165 -135787290 + (CA)n Simple_repeat Simple_repeat 1 41 0 2274 111 0 7 chr12 8000185 8000491 -135785964 - AluSx SINE Alu 0 312 9 261 139 0 0 chr12 8002304 8002347 -135784108 + (TTC)n Simple_repeat Simple_repeat 3 45 0 687 115 0 0 chr12 8002362 8002458 -135783997 - U6 snRNA snRNA -10 97 2 192 308 0 0 chr12 8002811 8002863 -135783592 + MIR SINE MIR 79 130 -132 2017 211 84 16 chr12 8003853 8004355 -135782100 + MLT1F LTR MaLR 1 536 -6 2239 127 102 13 chr12 8005166 8005559 -135780896 + MSTA LTR MaLR 1 428 0 314 360 131 0 chr12 8006049 8006224 -135780231 - L2 LINE L2 -50 3222 3025 541 226 0 9 chr12 8006313 8006428 -135780027 - MIR SINE MIR -110 152 39 775 216 119 10 chr12 8006449 8006643 -135779812 - MER20 DNA MER1_type -4 215 1 834 292 20 20 chr12 8006688 8006938 -135779517 - MIR SINE MIR -11 251 2 215 329 68 44 chr12 8006987 8007236 -135779219 - L2 LINE L2 -401 2913 2659 457 225 17 67 chr12 8008318 8008438 -135778017 - MER81 DNA DNA 0 114 1 553 178 0 9 chr12 8008552 8008659 -135777796 - Charlie1 DNA MER1_type -33 2728 2623 * 822 219 47 21 chr12 8008646 8008879 -135777576 - Charlie1 DNA MER1_type -2522 239 1 486 288 92 27 chr12 8008879 8008991 -135777464 - L1MEc LINE L1 -4332 2389 2286 2857 143 106 33 chr12 8008991 8009355 -135777100 - MER1A DNA MER1_type -2173 527 116 207 0 0 0 chr12 8009355 8009378 -135777077 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2857 143 106 33 chr12 8009378 8009504 -135776951 - MER1A DNA MER1_type -2584 116 1 486 288 92 27 chr12 8009504 8009686 -135776769 - L1MEc LINE L1 -4435 2286 2076 880 197 0 0 chr12 8009687 8009834 -135776621 - AluJb SINE Alu -27 285 139 719 230 104 49 chr12 8009837 8010166 -135776289 - L1MEc LINE L1 -4529 2011 1682 609 212 9 0 chr12 8010557 8010670 -135775785 - MER81 DNA DNA 0 114 1 24 0 0 0 chr12 8012242 8012266 -135774189 + GC_rich Low_complexity Low_complexity 1 24 0 247 314 88 25 chr12 8013377 8013536 -135772919 + MIR SINE MIR 30 198 -64 243 0 0 0 chr12 8013780 8013807 -135772648 + (A)n Simple_repeat Simple_repeat 1 27 0 1765 296 80 38 chr12 8013993 8014579 -135771876 - L2 LINE L2 -2 3311 2751 2324 84 11 0 chr12 8014579 8014894 -135771561 - AluSc SINE Alu 0 318 1 1765 296 80 38 chr12 8014894 8015476 -135770979 - L2 LINE L2 -562 2751 2091 1541 169 28 0 chr12 8015603 8015857 -135770598 + AluJo SINE Alu 22 282 -30 270 301 0 46 chr12 8017507 8017660 -135768795 + CT-rich Low_complexity Low_complexity 5 150 0 183 80 0 0 chr12 8017661 8017686 -135768769 + (T)n Simple_repeat Simple_repeat 1 25 0 275 319 11 0 chr12 8017697 8017791 -135768664 + CT-rich Low_complexity Low_complexity 1 95 0 401 285 40 75 chr12 8018298 8018498 -135767957 - MIR3 SINE MIR -7 201 9 193 312 21 54 chr12 8018540 8018633 -135767822 + MIR3 SINE MIR 12 101 -107 714 189 137 16 chr12 8018712 8018902 -135767553 + MER58A DNA MER1_type 3 215 -9 2417 72 16 20 chr12 8018903 8019207 -135767248 + AluSg SINE Alu 1 303 -7 309 314 110 8 chr12 8019388 8019506 -135766949 + MIR SINE MIR 133 262 0 255 152 0 0 chr12 8020298 8020344 -135766111 + (TG)n Simple_repeat Simple_repeat 2 47 0 543 381 77 21 chr12 8020504 8021111 -135765344 + L2 LINE L2 2140 2780 -534 722 113 0 0 chr12 8021114 8021211 -135765244 + AluJ/FLAM SINE Alu 2 98 -214 1151 137 0 0 chr12 8021219 8021380 -135765075 + FRAM SINE Alu 15 175 -1 683 258 85 29 chr12 8021983 8022313 -135764142 + L1ME LINE L1 5278 5629 -492 327 222 133 22 chr12 8022371 8022506 -135763949 - L1MC4 LINE L1 -1 8041 7892 4694 231 88 55 chr12 8022648 8024892 -135761563 - L1ME2 LINE L1 -10 6154 3806 2260 94 33 0 chr12 8024892 8025191 -135761264 - AluSc SINE Alu 0 309 1 4694 231 88 55 chr12 8025191 8025689 -135760766 - L1ME2 LINE L1 -2358 3806 3326 2056 112 4 4 chr12 8025694 8025962 -135760493 + AluSp SINE Alu 14 281 -32 531 0 0 0 chr12 8025964 8026023 -135760432 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 305 286 77 11 chr12 8029225 8029316 -135757139 - L2 LINE L2 -14 3258 3162 365 219 134 63 chr12 8029529 8029581 -135756874 - L1ME4a LINE L1 -33 6088 6041 2098 145 10 3 chr12 8029581 8029891 -135756564 + AluJb SINE Alu 1 312 0 365 219 134 63 chr12 8029891 8030076 -135756379 - L1ME4a LINE L1 -80 6041 5834 766 275 45 38 chr12 8030079 8030366 -135756089 + MARNA DNA Mariner 129 417 -169 955 240 33 8 chr12 8030459 8030701 -135755754 - MIR SINE MIR 0 262 15 198 0 0 0 chr12 8030895 8030917 -135755538 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1643 175 41 0 chr12 8030981 8031250 -135755205 - AluJo SINE Alu -30 282 3 416 246 173 11 chr12 8032403 8032538 -135753917 + MER5B DNA MER1_type 17 188 -1 192 40 0 0 chr12 8036229 8036254 -135750201 + (CTGGGG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr12 8036623 8036653 -135749802 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 336 153 23 chr12 8037604 8038042 -135748413 + L2 LINE L2 2181 2675 -639 342 260 55 0 chr12 8038045 8038180 -135748275 + (CCTG)n Simple_repeat Simple_repeat 1 142 0 444 274 246 28 chr12 8038370 8038728 -135747727 + L2 LINE L2 2827 3262 -10 247 235 204 15 chr12 8041511 8041643 -135744812 + MIR SINE MIR 18 174 -88 189 291 0 18 chr12 8041845 8041900 -135744555 + MIR SINE MIR 1 54 -208 1211 117 0 0 chr12 8042046 8042208 -135744247 - AluSp SINE Alu -18 295 134 2251 87 20 7 chr12 8042209 8042507 -135743948 - AluY SINE Alu -9 302 1 200 100 25 0 chr12 8043536 8043576 -135742879 + (CA)n Simple_repeat Simple_repeat 1 41 0 221 0 35 0 chr12 8043576 8043605 -135742850 + (CAG)n Simple_repeat Simple_repeat 1 30 0 607 173 7 65 chr12 8044766 8044905 -135741550 + FLAM_A SINE Alu 11 141 -1 41 66 0 0 chr12 8044928 8045004 -135741451 + AT_rich Low_complexity Low_complexity 1 76 0 2005 155 0 3 chr12 8045054 8045351 -135741104 + AluJo SINE Alu 1 296 -16 4462 256 102 52 chr12 8045361 8045769 -135740686 - HAL1 LINE L1 -56 2451 2065 216 0 0 0 chr12 8045769 8045793 -135740662 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4462 256 102 52 chr12 8045793 8046954 -135739501 - HAL1 LINE L1 -442 2065 963 2301 97 3 10 chr12 8046954 8047254 -135739201 + AluSx SINE Alu 1 298 -14 4462 256 102 52 chr12 8047254 8047555 -135738900 - HAL1 LINE L1 -1544 963 678 3342 171 36 3 chr12 8047555 8048141 -135738314 - MER6A DNA MER2_type 0 605 1 4462 256 102 52 chr12 8048141 8048598 -135737857 - HAL1 LINE L1 -1829 678 6 467 219 67 0 chr12 8048832 8048937 -135737518 + L2 LINE L2 3161 3272 0 320 287 74 25 chr12 8049089 8049211 -135737244 - MIR SINE MIR -65 143 16 205 228 53 18 chr12 8049649 8049706 -135736749 - L2 LINE L2 -536 2778 2720 350 342 0 27 chr12 8050017 8050128 -135736327 - L2 LINE L2 -17 3255 3148 481 269 45 0 chr12 8050770 8050926 -135735529 - Charlie8 DNA MER1_type -2159 258 96 1314 146 10 5 chr12 8050954 8051159 -135735296 + AluJo SINE Alu 1 206 -106 632 130 19 9 chr12 8051272 8051380 -135735075 - AluSq/x SINE Alu -203 110 2 757 310 98 9 chr12 8051383 8051731 -135734724 - L1MC/D LINE L1 -1984 5824 5446 263 280 67 0 chr12 8051763 8051838 -135734617 - Charlie8 DNA MER1_type -2331 86 7 2155 97 0 94 chr12 8052638 8052979 -135733476 - AluSq SINE Alu -4 309 1 2695 171 88 3 chr12 8052979 8053547 -135732908 - L1MB7 LINE L1 -47 6137 5522 2564 48 0 13 chr12 8053593 8053907 -135732548 - AluY SINE Alu -1 310 1 2119 90 13 13 chr12 8054311 8054610 -135731845 + AluSq SINE Alu 1 299 -14 495 267 47 20 chr12 8056031 8056181 -135730274 - MIR SINE MIR -44 218 65 2269 89 0 14 chr12 8056481 8056774 -135729681 + AluSc SINE Alu 1 289 -20 671 227 0 0 chr12 8057019 8057138 -135729317 + FLAM_A SINE Alu 3 121 -12 213 231 0 0 chr12 8057324 8057376 -135729079 + (TA)n Simple_repeat Simple_repeat 2 53 0 180 0 0 0 chr12 8057889 8057909 -135728546 + (CA)n Simple_repeat Simple_repeat 1 20 0 188 300 54 54 chr12 8058139 8058269 -135728186 + L2 LINE L2 3125 3254 -18 507 278 86 15 chr12 8058409 8058607 -135727848 - L1ME LINE L1 -492 5629 5418 221 138 0 0 chr12 8058653 8058682 -135727773 + (T)n Simple_repeat Simple_repeat 1 29 0 1200 180 38 70 chr12 8059735 8059790 -135726665 - MLT1A1 LTR MaLR 0 365 310 3645 146 4 2 chr12 8059790 8060316 -135726139 + MER1A DNA MER1_type 1 527 0 1200 180 38 70 chr12 8060316 8060576 -135725879 - MLT1A1 LTR MaLR -55 310 60 356 117 17 0 chr12 8060570 8060630 -135725825 + MADE1 DNA Mariner 20 80 0 * 460 110 0 85 chr12 8060630 8060707 -135725748 - MLT1A1 LTR MaLR -304 70 1 25 0 0 0 chr12 8061354 8061379 -135725076 + AT_rich Low_complexity Low_complexity 1 25 0 1395 151 41 50 chr12 8061549 8061692 -135724763 - MER66-int LTR ERV1 -2482 4194 4051 1882 116 0 28 chr12 8061692 8061977 -135724478 - AluSx SINE Alu 0 312 36 1395 151 41 50 chr12 8061977 8062151 -135724304 - MER66-int LTR ERV1 -2625 4051 3880 * 5329 165 29 11 chr12 8062134 8063595 -135722860 + MER66-int LTR ERV1 647 2169 -4507 2797 169 74 16 chr12 8063583 8064151 -135722304 + MER66-int LTR ERV1 2336 2936 -3740 * 5015 223 48 28 chr12 8064406 8065147 -135721308 + MER66-int LTR ERV1 2780 3561 -3115 3946 91 0 8 chr12 8065147 8065662 -135720793 - MER9 LTR ERVK 0 511 1 5015 223 48 28 chr12 8065662 8066259 -135720196 + MER66-int LTR ERV1 3561 4145 -2531 1050 168 19 0 chr12 8066293 8066454 -135720001 - FRAM SINE Alu -11 165 2 336 246 36 87 chr12 8066692 8066830 -135719625 + HAL1b LINE L1 652 782 -566 2938 139 60 24 chr12 8067123 8067657 -135718798 - L1MC/D LINE L1 -537 5807 5255 2282 146 0 36 chr12 8067662 8068074 -135718381 - L1MC2 LINE L1 -123 6221 5825 447 152 0 0 chr12 8068078 8068157 -135718298 + CT-rich Low_complexity Low_complexity 4 82 0 719 135 75 23 chr12 8068160 8068293 -135718162 + MER74A LTR ERVL 419 558 0 334 230 46 23 chr12 8068297 8068384 -135718071 - L2 LINE L2 -32 3281 3193 6043 137 54 7 chr12 8069337 8070441 -135716014 - L1MC1 LINE L1 0 6333 5181 181 245 82 51 chr12 8070783 8070881 -135715574 - MIR3 SINE MIR -9 199 99 1205 196 68 0 chr12 8070961 8071227 -135715228 - L1MDa LINE L1 -4368 2172 1889 381 220 11 11 chr12 8071230 8071321 -135715134 + MLT1D LTR MaLR 9 99 -406 544 197 0 8 chr12 8071331 8071453 -135715002 - L1M4 LINE L1 -825 5321 5201 255 170 0 0 chr12 8071453 8071500 -135714955 - MLT1D LTR MaLR -9 496 450 1101 213 32 29 chr12 8071578 8071855 -135714600 + MLT1D LTR MaLR 111 388 -117 2625 188 9 0 chr12 8071868 8072332 -135714123 - L1MDa LINE L1 -6052 488 21 477 0 0 0 chr12 8072343 8072396 -135714059 + (CA)n Simple_repeat Simple_repeat 2 54 0 1832 122 42 96 chr12 8072624 8072958 -135713497 + MLT1A1 LTR MaLR 1 313 -52 2263 108 10 0 chr12 8072958 8073263 -135713192 - AluSx SINE Alu 0 312 5 1832 122 42 96 chr12 8073263 8073314 -135713141 + MLT1A1 LTR MaLR 313 365 0 1057 153 99 132 chr12 8073767 8074118 -135712337 - MSTD LTR MaLR 0 396 1 2416 103 0 3 chr12 8074177 8074487 -135711968 + AluSp SINE Alu 1 309 -4 1941 136 7 33 chr12 8074566 8074867 -135711588 + AluSx SINE Alu 1 293 -19 3312 138 46 4 chr12 8075209 8075711 -135710744 + LTR17 LTR ERV1 256 778 -2 4995 94 9 29 chr12 8075713 8076414 -135710041 + HERV17 LTR ERV1 2 688 -7938 9578 61 4 5 chr12 8076871 8078035 -135708420 + HERV17 LTR ERV1 1535 2697 -5929 11747 63 11 22 chr12 8078171 8079671 -135706784 + HERV17 LTR ERV1 3096 4578 -4048 589 28 0 0 chr12 8079659 8079730 -135706725 + HERV17 LTR ERV1 7478 7548 -1078 * 2310 59 21 3 chr12 8079720 8080007 -135706448 + HERV17 LTR ERV1 8335 8626 0 2421 94 0 9 chr12 8080007 8080336 -135706119 + LTR17 LTR ERV1 1 326 -454 183 80 0 0 chr12 8080336 8080361 -135706094 + (GAAAA)n Simple_repeat Simple_repeat 3 27 0 274 196 0 0 chr12 8080560 8080611 -135705844 + MIR SINE MIR 3 53 -209 1394 175 36 62 chr12 8080629 8080684 -135705771 + MER58B DNA MER1_type 37 92 -2328 1911 144 18 0 chr12 8080684 8080969 -135705486 + AluSx SINE Alu 1 290 -22 1394 175 36 62 chr12 8080969 8081222 -135705233 + MER58B DNA MER1_type 92 337 -4 889 203 43 0 chr12 8081225 8081412 -135705043 + MIR SINE MIR 46 240 -22 29 0 0 0 chr12 8081466 8081495 -135704960 + AT_rich Low_complexity Low_complexity 1 29 0 266 314 116 0 chr12 8081787 8081908 -135704547 + MIR SINE MIR 128 262 0 214 220 51 0 chr12 8083090 8083149 -135703306 - MIR SINE MIR -62 146 85 204 274 12 24 chr12 8083627 8083711 -135702744 + G-rich Low_complexity Low_complexity 1 83 0 195 161 0 0 chr12 8084585 8084616 -135701839 - MIR SINE MIR -65 143 113 604 307 35 8 chr12 8085945 8086199 -135700256 - MIR SINE MIR -1 261 1 381 313 73 28 chr12 8086853 8087032 -135699423 - MIR SINE MIR -45 217 31 2068 128 20 0 chr12 8087033 8087331 -135699124 - AluSx SINE Alu -8 304 1 1204 220 32 16 chr12 8088067 8088376 -135698079 - L1MD2 LINE L1 -1 6358 6024 423 392 0 0 chr12 8088756 8088904 -135697551 - MIR SINE MIR -107 155 8 197 167 60 30 chr12 8089812 8089980 -135696475 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 344 162 45 45 chr12 8089995 8090231 -135696224 + (TA)n Simple_repeat Simple_repeat 1 236 0 300 149 21 129 chr12 8090236 8090430 -135696025 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 253 170 16 129 chr12 8090444 8090638 -135695817 + (TATAA)n Simple_repeat Simple_repeat 5 176 0 * 259 222 62 25 chr12 8090590 8090752 -135695703 + (CATATA)n Simple_repeat Simple_repeat 3 170 0 * 391 150 39 61 chr12 8090664 8090844 -135695611 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 232 184 67 21 chr12 8090861 8091151 -135695304 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 6965 50 13 52 chr12 8092242 8093935 -135692520 - SVA Other Other -683 1384 34 252 0 0 0 chr12 8093939 8093967 -135692488 + (GGGAGA)n Simple_repeat Simple_repeat 6 33 0 524 224 86 9 chr12 8094036 8094152 -135692303 + FLAM_A SINE Alu 4 128 -14 492 242 22 11 chr12 8094191 8094369 -135692086 + (CATA)n Simple_repeat Simple_repeat 1 180 0 2098 122 3 7 chr12 8095910 8096204 -135690251 + AluSp SINE Alu 1 293 -20 378 61 0 0 chr12 8096217 8096266 -135690189 + (CACTG)n Simple_repeat Simple_repeat 4 52 0 388 293 26 17 chr12 8096266 8096382 -135690073 + MER5A DNA MER1_type 73 189 0 1186 214 69 33 chr12 8097869 8098172 -135688283 + L1 LINE L1 4788 5101 -1045 1604 164 96 3 chr12 8099195 8099507 -135686948 + MER58B DNA MER1_type 1 341 0 740 183 0 30 chr12 8102274 8102405 -135684050 + FLAM_A SINE Alu 1 127 -6 2332 107 3 0 chr12 8104991 8105300 -135681155 - AluSp SINE Alu -3 310 1 635 168 35 0 chr12 8105344 8105457 -135680998 - FLAM_C SINE Alu -25 118 2 224 24 0 95 chr12 8105500 8105542 -135680913 + (A)n Simple_repeat Simple_repeat 1 38 0 2334 82 74 10 chr12 8105839 8106242 -135680213 + L1PA3 LINE L1 5724 6152 -3 5165 133 37 2 chr12 8106600 8107419 -135679036 + L1PA16 LINE L1 5320 6166 0 37 39 0 0 chr12 8107440 8107491 -135678964 + AT_rich Low_complexity Low_complexity 1 51 0 2437 75 0 0 chr12 8107491 8107783 -135678672 - AluSq SINE Alu -21 292 1 551 240 141 32 chr12 8108782 8109124 -135677331 - MLT1F LTR MaLR 0 542 100 396 173 0 91 chr12 8109555 8109665 -135676790 - MLT1F LTR MaLR -409 140 41 3127 107 22 6 chr12 8110569 8111057 -135675398 - L1MA3 LINE L1 0 6305 5810 469 302 107 13 chr12 8111455 8111680 -135674775 + MIR SINE MIR 17 262 0 1706 289 59 12 chr12 8111718 8112281 -135674174 + ERVL LTR ERVL 3576 4164 -1600 * 2043 294 23 14 chr12 8112274 8112924 -135673531 + ERVL LTR ERVL 4338 4993 -771 2167 104 0 10 chr12 8113748 8114037 -135672418 - AluSq SINE Alu -27 286 1 1111 240 20 20 chr12 8114292 8114538 -135671917 + MER69 DNA AcHobo 1 246 -980 428 214 45 0 chr12 8114533 8114622 -135671833 + MER69 DNA AcHobo 2434 2526 0 * 1965 122 11 7 chr12 8114766 8115052 -135671403 - AluSx SINE Alu -25 287 1 726 267 35 70 chr12 8115577 8115892 -135670563 - MLT1I LTR MaLR 0 409 106 327 333 82 6 chr12 8116216 8116375 -135670080 - L2 LINE L2 0 3313 3143 201 278 66 93 chr12 8116556 8116707 -135669748 - MIR SINE MIR -114 148 2 241 26 53 0 chr12 8117078 8117116 -135669339 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7762 32 8 2 chr12 8117116 8118839 -135667616 - L1PA5 LINE L1 -18 6136 4405 809 149 0 0 chr12 8119889 8120010 -135666445 + FLAM_C SINE Alu 1 121 -12 5976 66 1 0 chr12 8120944 8121760 -135664695 - L1P LINE L1 -881 5265 4449 727 376 112 24 chr12 8121764 8122212 -135664243 - L2 LINE L2 -1922 1392 985 1180 217 151 30 chr12 8122212 8122384 -135664071 - MLT1A2 LTR MaLR 0 374 224 1341 224 3 33 chr12 8122384 8122687 -135663768 - AluJo SINE Alu -17 295 2 1180 217 151 30 chr12 8122687 8122846 -135663609 - MLT1A2 LTR MaLR -150 224 3 727 376 112 24 chr12 8122846 8123462 -135662993 - L2 LINE L2 -2329 985 235 258 261 0 0 chr12 8124575 8124640 -135661815 - MLT1K LTR MaLR 0 588 524 773 162 8 0 chr12 8125279 8125396 -135661059 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr12 8125401 8125422 -135661033 + AT_rich Low_complexity Low_complexity 1 21 0 323 329 138 0 chr12 8125476 8125643 -135660812 - L2 LINE L2 -151 3121 2932 325 265 0 29 chr12 8126247 8126349 -135660106 - L1MC5 LINE L1 -50 7911 7813 1119 216 72 61 chr12 8126381 8126937 -135659518 - L1MC5 LINE L1 -214 7747 7186 363 294 169 22 chr12 8127887 8128118 -135658337 - L1M4 LINE L1 -2196 3950 3686 963 169 71 83 chr12 8128219 8128488 -135657967 + L1 LINE L1 3221 3487 -2659 2183 110 7 13 chr12 8128488 8128798 -135657657 + AluSx SINE Alu 4 311 -1 963 169 71 83 chr12 8128798 8128866 -135657589 + L1 LINE L1 3487 3554 -2592 * 2385 156 13 61 chr12 8128860 8129400 -135657055 + L1 LINE L1 3866 4379 -1767 2008 134 10 0 chr12 8129403 8129695 -135656760 + AluSx SINE Alu 1 295 -17 956 188 33 62 chr12 8129699 8129971 -135656484 + L1MA9 LINE L1 5946 6209 -125 2492 233 34 39 chr12 8130055 8130956 -135655499 + L1M4 LINE L1 3502 4398 -1748 290 293 105 44 chr12 8130975 8131204 -135655251 + MARNA DNA Mariner 254 496 -90 511 280 97 24 chr12 8131529 8131736 -135654719 - MIR SINE MIR -27 235 14 539 262 92 44 chr12 8132148 8132235 -135654220 - L1MC4 LINE L1 -40 8002 7921 2336 100 0 0 chr12 8132235 8132535 -135653920 - AluSx SINE Alu -12 300 1 539 262 92 44 chr12 8132535 8132836 -135653619 - L1MC4 LINE L1 -121 7921 7595 1725 171 3 26 chr12 8133018 8133327 -135653128 + AluJb SINE Alu 1 302 -10 262 217 68 62 chr12 8133476 8133637 -135652818 - L1ME4a LINE L1 -4 6117 5956 2085 104 3 17 chr12 8133729 8134028 -135652427 - AluSg SINE Alu -15 295 1 239 327 36 12 chr12 8134036 8134204 -135652251 - L1ME4a LINE L1 -296 5825 5654 22 0 0 0 chr12 8134236 8134258 -135652197 + AT_rich Low_complexity Low_complexity 1 22 0 283 291 9 45 chr12 8134786 8134896 -135651559 - MIR SINE MIR -33 229 124 404 223 81 5 chr12 8135546 8135690 -135650765 - L1ME3 LINE L1 -1 6163 6009 1160 205 63 22 chr12 8136130 8136407 -135650048 - L1ME3 LINE L1 -167 5995 5702 1568 230 43 77 chr12 8136407 8137041 -135649414 + LTR9 LTR ERV1 1 612 0 1160 205 63 22 chr12 8137041 8137080 -135649375 - L1ME3 LINE L1 -460 5702 5666 992 128 0 0 chr12 8238850 8238991 -135547464 + AluSg/x SINE Alu 152 292 -18 2180 82 44 3 chr12 8238994 8239310 -135547145 - MER4E LTR ERV1 -316 450 122 1995 121 6 13 chr12 8239352 8239488 -135546967 + AluSq SINE Alu 1 136 -177 2145 112 0 0 chr12 8239488 8239791 -135546664 + AluSp SINE Alu 1 303 -10 1995 121 6 13 chr12 8239791 8239968 -135546487 + AluSq SINE Alu 136 312 -1 2024 148 0 0 chr12 8239977 8240287 -135546168 + AluSx SINE Alu 1 310 -2 1980 125 4 0 chr12 8240287 8240602 -135545853 + AluSx SINE Alu 3 318 0 411 265 34 17 chr12 8240602 8240719 -135545736 - L1M4 LINE L1 -1289 4857 4739 2339 68 0 0 chr12 8240719 8241026 -135545429 - AluY SINE Alu -4 307 1 2016 99 14 10 chr12 8241032 8241326 -135545129 - AluSq SINE Alu -18 295 1 1279 150 40 0 chr12 8241329 8241556 -135544899 - L1MB2 LINE L1 -286 5885 5650 1657 175 16 10 chr12 8241556 8241865 -135544590 - AluJo SINE Alu -1 311 1 606 213 25 8 chr12 8241873 8241995 -135544460 + FRAM SINE Alu 24 147 -29 183 129 0 0 chr12 8242177 8242208 -135544247 + (TG)n Simple_repeat Simple_repeat 2 32 0 268 144 0 24 chr12 8242319 8242369 -135544086 - Alu SINE Alu -261 39 1 2123 71 60 0 chr12 8242682 8242965 -135543490 + AluSx SINE Alu 1 300 -12 820 188 12 0 chr12 8242965 8243125 -135543330 + AluSg/x SINE Alu 134 295 -17 186 71 0 0 chr12 8243241 8243269 -135543186 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2492 44 0 0 chr12 8243314 8243612 -135542843 + AluY SINE Alu 1 298 -13 199 244 0 139 chr12 8243679 8243707 -135542748 - L2 LINE L2 -582 2732 2702 1304 178 36 39 chr12 8243707 8244016 -135542439 - AluJo SINE Alu -4 308 1 199 244 0 139 chr12 8244016 8244073 -135542382 - L2 LINE L2 -612 2702 2659 2047 124 7 0 chr12 8244599 8244905 -135541550 - AluSx SINE Alu 0 312 5 1991 108 7 0 chr12 8245163 8245451 -135541004 + AluSx SINE Alu 1 290 -22 255 173 0 0 chr12 8245665 8245717 -135540738 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1515 150 14 38 chr12 8245723 8246010 -135540445 - AluJo SINE Alu -12 300 21 1046 106 0 0 chr12 8246030 8246172 -135540283 + AluSg/x SINE Alu 121 262 -50 1063 191 76 142 chr12 8246242 8246713 -135539742 - MER31B LTR ERV1 -20 446 7 1186 151 82 58 chr12 8247005 8247037 -135539418 - AluJb SINE Alu -1 311 281 477 0 0 0 chr12 8247037 8247090 -135539365 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1186 151 82 58 chr12 8247090 8247348 -135539107 - AluJb SINE Alu -31 281 14 508 173 71 39 chr12 8247383 8247510 -135538945 - FLAM_A SINE Alu -2 131 1 256 93 0 0 chr12 8247540 8247583 -135538872 - HY3 scRNA scRNA -2 99 57 2061 126 3 0 chr12 8247611 8247912 -135538543 + AluSg SINE Alu 2 303 -7 2100 101 0 20 chr12 8247914 8248244 -135538211 + AluSp SINE Alu 3 313 0 1118 206 79 115 chr12 8248337 8248602 -135537853 + MER39 LTR ERV1 1 274 -433 591 194 0 72 chr12 8248602 8248741 -135537714 - FLAM_A SINE Alu 0 133 5 1118 206 79 115 chr12 8248741 8248926 -135537529 + MER39 LTR ERV1 274 464 -243 2313 82 0 0 chr12 8248926 8249229 -135537226 - AluSc SINE Alu -2 307 5 1118 206 79 115 chr12 8249229 8249299 -135537156 + MER39 LTR ERV1 464 688 -19 762 68 0 0 chr12 8249726 8249829 -135536626 - AluSp/q SINE Alu -3 310 208 1288 141 0 134 chr12 8249830 8249932 -135536523 + AluJb SINE Alu 43 157 -155 207 0 0 0 chr12 8249932 8249955 -135536500 + (TA)n Simple_repeat Simple_repeat 2 24 0 1288 141 0 134 chr12 8249955 8250150 -135536305 + AluJb SINE Alu 157 300 -12 22 0 0 0 chr12 8250179 8250201 -135536254 + AT_rich Low_complexity Low_complexity 1 22 0 2119 128 0 0 chr12 8250309 8250607 -135535848 + AluSg SINE Alu 1 298 -12 279 311 113 0 chr12 8250610 8250716 -135535739 + L2 LINE L2 3191 3308 -5 360 160 0 55 chr12 8250843 8250921 -135535534 + AluS SINE Alu 1 57 -251 1605 159 45 3 chr12 8250949 8251238 -135535217 + AluJb SINE Alu 1 301 -11 2212 75 7 3 chr12 8251585 8251890 -135534565 + AluSg SINE Alu 1 306 -4 2369 49 0 33 chr12 8251989 8252294 -135534161 - AluY SINE Alu -14 297 3 1116 165 40 0 chr12 8252300 8252524 -135533931 - L1PA13 LINE L1 0 6163 5931 301 325 0 0 chr12 8252885 8252965 -135533490 + L1ME LINE L1 5740 5819 -302 1680 131 4 0 chr12 8252981 8253240 -135533215 + AluSx SINE Alu 1 260 -52 329 170 0 0 chr12 8253513 8253566 -135532889 + Alu SINE Alu 1 53 -249 2003 113 10 3 chr12 8253584 8253875 -135532580 - AluSc SINE Alu -16 293 1 412 261 153 25 chr12 8253934 8254091 -135532364 + MIR SINE MIR 79 255 -7 2514 37 3 0 chr12 8255333 8255630 -135530825 + AluY SINE Alu 3 300 -11 1028 181 43 0 chr12 8255674 8255884 -135530571 + Charlie4a DNA MER1_type 25 243 -265 822 163 0 0 chr12 8255888 8256029 -135530426 + FLAM_C SINE Alu 3 143 0 692 159 24 111 chr12 8256049 8256187 -135530268 + Charlie4a DNA MER1_type 228 336 -1625 2391 77 0 0 chr12 8256187 8256498 -135529957 + AluY SINE Alu 1 311 0 692 159 24 111 chr12 8256498 8256611 -135529844 + Charlie4a DNA MER1_type 336 457 -51 1972 100 20 20 chr12 8256612 8256912 -135529543 + AluSp SINE Alu 1 300 -13 572 204 14 78 chr12 8257144 8257286 -135529169 - FLAM_A SINE Alu -1 141 9 2032 100 7 3 chr12 8257528 8257819 -135528636 + AluSc SINE Alu 2 293 -16 329 170 0 0 chr12 8257837 8257890 -135528565 - Alu SINE Alu -249 53 1 2117 96 0 35 chr12 8257971 8258140 -135528315 - AluSx SINE Alu -10 302 147 2159 105 3 0 chr12 8258140 8258436 -135528019 - AluSp SINE Alu -15 298 2 2117 96 0 35 chr12 8258436 8258579 -135527876 - AluSx SINE Alu -165 147 1 275 313 62 20 chr12 8258591 8258786 -135527669 - L1ME LINE L1 -304 5817 5615 1570 181 0 0 chr12 8258891 8259157 -135527298 + AluJo SINE Alu 3 268 -44 25 65 0 0 chr12 8259176 8259222 -135527233 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr12 8259308 8259350 -135527105 + AT_rich Low_complexity Low_complexity 1 42 0 1780 116 4 11 chr12 8259397 8259664 -135526791 - AluSp SINE Alu -48 265 1 389 223 0 0 chr12 8259751 8259829 -135526626 - AluJ/FRAM SINE Alu -15 287 216 192 97 0 0 chr12 8260036 8260067 -135526388 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr12 8260639 8260663 -135525792 + AT_rich Low_complexity Low_complexity 1 24 0 1342 211 16 20 chr12 8261036 8261340 -135525115 - AluSp SINE Alu 0 303 1 1829 150 3 0 chr12 8261356 8261643 -135524812 - AluSq SINE Alu -25 288 1 523 89 13 13 chr12 8262111 8262190 -135524265 + AluY SINE Alu 5 83 -228 1818 96 0 116 chr12 8262330 8262674 -135523781 + AluSx SINE Alu 1 304 -8 417 151 82 0 chr12 8262937 8263010 -135523445 + AluJ/FLAM SINE Alu 2 80 -232 704 154 46 23 chr12 8263172 8263302 -135523153 + AluJo/FLAM SINE Alu 1 133 -169 1687 100 25 0 chr12 8263305 8263546 -135522909 + AluSx SINE Alu 1 247 -65 1776 135 10 0 chr12 8263690 8263978 -135522477 + AluSx SINE Alu 15 305 -7 1198 279 71 16 chr12 8263979 8264449 -135522006 + MLT1D LTR MaLR 8 503 -2 1172 157 4 0 chr12 8264838 8265661 -135520794 - ALR/Alpha Satellite centromeric 0 826 1 1094 162 7 0 chr12 8265674 8266308 -135520147 - ALR/Alpha Satellite centromeric 0 638 1 2509 53 0 0 chr12 8266708 8267011 -135519444 - AluY SINE Alu -6 305 3 1001 130 0 0 chr12 8267333 8267471 -135518984 + AluSq/x SINE Alu 1 138 -175 1978 117 4 0 chr12 8267487 8267768 -135518687 + AluSx SINE Alu 21 302 -10 2037 110 0 17 chr12 8268175 8268310 -135518145 + AluSg SINE Alu 1 137 -173 1944 129 3 7 chr12 8268310 8268446 -135518009 + AluSg SINE Alu 1 135 -175 1316 170 19 99 chr12 8268446 8268769 -135517686 + AluJb SINE Alu 2 298 -4 2037 110 0 17 chr12 8268604 8268769 -135517686 + AluSg SINE Alu 137 296 -14 1619 104 7 100 chr12 8268770 8268915 -135517540 + AluSq SINE Alu 1 158 -155 2449 47 0 3 chr12 8268915 8269214 -135517241 + AluY SINE Alu 1 298 -13 1619 104 7 100 chr12 8269214 8269227 -135517228 + AluSq SINE Alu 158 171 -142 2173 99 0 10 chr12 8269227 8269539 -135516916 + AluY SINE Alu 3 311 0 1619 104 7 100 chr12 8269539 8269688 -135516767 + AluSq SINE Alu 171 280 -33 485 92 0 0 chr12 8269720 8269785 -135516670 - AluJ/FLAM SINE Alu -247 65 1 2344 86 0 0 chr12 8270044 8270345 -135516110 + AluY SINE Alu 1 301 -10 312 267 38 86 chr12 8270395 8270569 -135515886 - MIR SINE MIR -14 194 32 288 0 0 0 chr12 8270804 8270836 -135515619 + (TG)n Simple_repeat Simple_repeat 1 32 0 1914 128 3 22 chr12 8270898 8271211 -135515244 + AluSq SINE Alu 1 307 -6 277 290 0 0 chr12 8271216 8271285 -135515170 - MIR SINE MIR -74 188 120 362 25 0 0 chr12 8271286 8271326 -135515129 - tRNA-Thr-ACA tRNA tRNA -36 40 1 226 239 69 28 chr12 8271332 8271425 -135515030 - MIR SINE MIR -80 128 32 2160 84 7 23 chr12 8271631 8271940 -135514515 + AluSx SINE Alu 1 304 -8 623 228 16 0 chr12 8272252 8272379 -135514076 - MER5A DNA MER1_type 0 189 61 1718 143 3 14 chr12 8272380 8272667 -135513788 - MER39 LTR ERV1 0 707 424 2113 56 66 3 chr12 8272668 8272954 -135513501 - AluSg SINE Alu -6 304 1 252 0 0 0 chr12 8273067 8273095 -135513360 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2012 104 4 0 chr12 8273098 8273378 -135513077 - AluSq SINE Alu -32 281 1 225 0 0 0 chr12 8273472 8273497 -135512958 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chr12 8273495 8273522 -135512933 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 * 351 291 57 23 chr12 8273763 8273938 -135512517 + L1ME4a LINE L1 5940 6120 -1 1410 155 3 97 chr12 8273948 8274112 -135512343 - AluJo SINE Alu -12 300 122 216 0 0 0 chr12 8274112 8274136 -135512319 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1708 130 0 11 chr12 8274136 8274397 -135512058 - AluSp SINE Alu -21 292 35 1410 155 3 97 chr12 8274397 8274560 -135511895 - AluJo SINE Alu -188 124 3 684 49 0 0 chr12 8274592 8274674 -135511781 - AluS SINE Alu -230 83 2 2023 123 7 3 chr12 8274705 8274998 -135511457 - AluSx SINE Alu -18 294 1 1457 148 15 77 chr12 8275112 8275254 -135511201 + AluSx SINE Alu 1 150 -162 2241 93 0 3 chr12 8275254 8275564 -135510891 + AluSg SINE Alu 1 309 -1 1457 148 15 77 chr12 8275564 8275745 -135510710 + AluSx SINE Alu 150 304 -8 1900 132 0 0 chr12 8275746 8276026 -135510429 + AluSx SINE Alu 1 280 -32 282 29 0 0 chr12 8276027 8276062 -135510393 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1731 178 0 0 chr12 8276104 8276407 -135510048 + AluJb SINE Alu 1 303 -9 1650 53 31 13 chr12 8276905 8277131 -135509324 - AluY SINE Alu -81 230 1 2174 167 10 15 chr12 8277154 8277508 -135508947 + MLT1A1 LTR MaLR 1 431 -26 2048 109 0 3 chr12 8277508 8277801 -135508654 + AluSx SINE Alu 1 292 -20 2174 167 10 15 chr12 8277801 8277828 -135508627 + MLT1A1 LTR MaLR 431 457 0 23 0 0 0 chr12 8277911 8277934 -135508521 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr12 8277966 8277994 -135508461 + AT_rich Low_complexity Low_complexity 1 28 0 388 192 43 54 chr12 8278174 8278341 -135508114 - AluSx SINE Alu -4 298 235 4049 134 134 37 chr12 8278342 8279485 -135506970 + pTR5 LTR ERV1 290 2295 -143 1515 155 4 0 chr12 8279485 8279724 -135506731 - AluSx SINE Alu -72 240 1 1310 209 112 0 chr12 8279840 8280003 -135506452 - AluJo SINE Alu -4 298 155 213 65 0 0 chr12 8280003 8280034 -135506421 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1310 209 112 0 chr12 8280034 8280138 -135506317 - AluJo SINE Alu -147 155 1 233 233 56 78 chr12 8280261 8280351 -135506104 + MLT1H LTR MaLR 233 320 -229 397 269 92 15 chr12 8280400 8280530 -135505925 + MLT1H LTR MaLR 409 548 -1 1575 191 0 17 chr12 8280578 8280877 -135505578 + AluJo SINE Alu 1 294 -18 1977 121 3 13 chr12 8280878 8281176 -135505279 + AluSp SINE Alu 1 295 -18 1349 206 51 32 chr12 8281245 8281280 -135505175 + LTR53 LTR ERVL 189 222 -297 1870 172 0 3 chr12 8281280 8281588 -135504867 - AluSx SINE Alu -5 307 1 1349 206 51 32 chr12 8281588 8281863 -135504592 + LTR53 LTR ERVL 222 505 -14 2275 79 0 3 chr12 8282322 8282614 -135503841 - AluSc SINE Alu -18 291 1 264 137 0 39 chr12 8282800 8282849 -135503606 + Alu SINE Alu 1 47 -255 508 116 0 0 chr12 8282849 8282918 -135503537 - THE1C LTR MaLR 0 375 307 450 63 0 0 chr12 8282919 8282982 -135503473 - AluSp/q SINE Alu -11 302 240 1689 119 0 0 chr12 8282984 8283227 -135503228 + AluSg/x SINE Alu 67 309 -3 2354 72 7 0 chr12 8283737 8284043 -135502412 + AluSp SINE Alu 1 308 -5 429 233 12 0 chr12 8284076 8284162 -135502293 + FRAM/FAM SINE Alu 1 84 -92 2493 55 3 0 chr12 8284617 8284927 -135501528 - AluY SINE Alu 0 311 1 1419 225 32 42 chr12 8285084 8285128 -135501327 - MLT1A2 LTR MaLR 0 374 331 2302 101 0 0 chr12 8285128 8285436 -135501019 + AluSx SINE Alu 1 308 -4 1419 225 32 42 chr12 8285436 8285769 -135500686 - MLT1A2 LTR MaLR -43 331 1 1808 125 34 3 chr12 8285953 8286248 -135500207 + AluJo SINE Alu 1 304 -8 2082 150 52 86 chr12 8286625 8287066 -135499389 + MSTB LTR MaLR 1 426 0 1989 46 102 25 chr12 8287199 8287484 -135498971 + AluY SINE Alu 1 307 -4 371 201 84 123 chr12 8287715 8287894 -135498561 - L2 LINE L2 -10 3303 3132 2038 100 4 7 chr12 8288003 8288331 -135498124 - AluSg SINE Alu 0 329 3 2132 114 7 0 chr12 8288333 8288630 -135497825 - AluSx SINE Alu -13 299 1 1841 141 0 36 chr12 8288644 8288830 -135497625 - AluSq SINE Alu 0 313 148 1956 103 39 3 chr12 8288830 8289112 -135497343 - AluSx SINE Alu -20 292 1 1841 141 0 36 chr12 8289112 8289255 -135497200 - AluSq SINE Alu -165 148 1 210 247 65 32 chr12 8289502 8289595 -135496860 + L2 LINE L2 2239 2334 -980 673 174 0 43 chr12 8289595 8289733 -135496722 + AluJo/FLAM SINE Alu 1 132 -170 1238 62 74 0 chr12 8289735 8289911 -135496544 + AluSg SINE Alu 3 191 -119 2264 117 53 91 chr12 8290029 8290189 -135496266 - Tigger1 DNA MER2_type -1983 435 271 2281 87 0 6 chr12 8290189 8290500 -135495955 - AluSc SINE Alu 0 309 1 2264 117 53 91 chr12 8290500 8290791 -135495664 - Tigger1 DNA MER2_type -2147 271 1 537 252 38 0 chr12 8290791 8290922 -135495533 - L2 LINE L2 -251 3062 2927 469 224 116 48 chr12 8290950 8291097 -135495358 - MER58B DNA MER1_type -3 338 182 2082 85 4 0 chr12 8291118 8291422 -135495033 + AluY SINE Alu 1 305 0 785 222 26 5 chr12 8291424 8291618 -135494837 + L1M4 LINE L1 5100 5297 -849 2011 117 7 3 chr12 8291640 8291949 -135494506 + AluY SINE Alu 1 310 -1 243 283 116 7 chr12 8291978 8292116 -135494339 + Charlie2a DNA MER1_type 1482 1634 -1228 1249 135 34 10 chr12 8292116 8292323 -135494132 - AluSg/x SINE Alu -10 300 89 3730 169 72 51 chr12 8292323 8293128 -135493327 - LTR12 LTR ERV1 0 826 5 1230 167 27 12 chr12 8293143 8293401 -135493054 - pTR5 LTR ERV1 -1093 1345 1084 329 146 0 0 chr12 8293401 8293449 -135493006 - Alu SINE Alu -243 56 9 2139 106 0 3 chr12 8293464 8293766 -135492689 - AluSg SINE Alu -3 307 7 2043 118 3 0 chr12 8293771 8294075 -135492380 - AluSx SINE Alu -7 305 1 311 300 190 0 chr12 8294170 8294270 -135492185 + MER91A DNA MER1_type 58 176 -20 286 286 57 0 chr12 8294281 8294351 -135492104 + MER91A DNA MER1_type 123 196 0 427 174 43 35 chr12 8294378 8294493 -135491962 + Charlie2 DNA MER1_type 2726 2841 -21 2226 94 3 0 chr12 8294665 8294962 -135491493 + AluSp SINE Alu 2 299 -14 201 374 65 0 chr12 8295780 8295903 -135490552 + L2 LINE L2 2949 3079 -193 780 275 67 20 chr12 8296033 8296331 -135490124 + L2 LINE L2 575 886 -2428 2033 125 0 13 chr12 8296336 8296649 -135489806 - AluSx SINE Alu -3 309 1 1946 181 52 30 chr12 8296649 8296957 -135489498 + L1M4 LINE L1 4845 5168 -978 2224 102 3 0 chr12 8296957 8297260 -135489195 + AluSp SINE Alu 1 304 -9 1946 181 52 30 chr12 8297260 8297414 -135489041 + L1M4 LINE L1 5168 5317 -829 513 309 65 13 chr12 8297418 8297603 -135488852 - L2 LINE L2 -1317 1997 1796 1457 151 4 39 chr12 8297603 8297882 -135488573 - AluSx SINE Alu -11 301 33 513 309 65 13 chr12 8297882 8297926 -135488529 - L2 LINE L2 -1518 1796 1756 779 163 16 0 chr12 8297931 8298060 -135488395 + FLAM_A SINE Alu 1 131 -2 2017 133 3 0 chr12 8298149 8298449 -135488006 - AluSq SINE Alu -12 301 1 2192 85 0 3 chr12 8298471 8298786 -135487669 - AluSc SINE Alu 0 314 1 402 93 0 0 chr12 8298862 8298916 -135487539 + Alu SINE Alu 243 296 -4 580 284 18 30 chr12 8298916 8299085 -135487370 - MER5A DNA MER1_type -16 173 7 508 251 27 53 chr12 8299173 8299280 -135487175 - Charlie2 DNA MER1_type -2602 260 159 1531 184 23 26 chr12 8299280 8299585 -135486870 - 7SLRNA srpRNA srpRNA -15 305 2 508 251 27 53 chr12 8299585 8299664 -135486791 - Charlie2 DNA MER1_type -2703 159 79 26 45 0 45 chr12 8299708 8299774 -135486681 + AT_rich Low_complexity Low_complexity 1 63 0 2153 108 3 0 chr12 8299821 8300128 -135486327 + AluSg SINE Alu 1 308 -2 851 126 0 16 chr12 8300319 8300446 -135486009 + FLAM_C SINE Alu 5 129 -4 2169 102 3 0 chr12 8300648 8300952 -135485503 + AluSg SINE Alu 1 305 -5 1877 99 3 87 chr12 8300957 8301279 -135485176 + AluSp SINE Alu 19 313 0 915 324 35 19 chr12 8301282 8301656 -135484799 - L2 LINE L2 -660 2654 2275 251 121 0 0 chr12 8301657 8301690 -135484765 + U2 snRNA snRNA 1 33 -155 573 273 120 34 chr12 8301736 8302003 -135484452 - L3 LINE CR1 -145 1432 1143 1104 130 12 0 chr12 8302134 8302303 -135484152 - AluSg/x SINE Alu -8 302 132 2107 105 31 0 chr12 8302303 8302597 -135483858 - AluSg SINE Alu -7 303 1 323 241 38 0 chr12 8302927 8303006 -135483449 - L3 LINE CR1 -1081 496 415 982 228 25 0 chr12 8303006 8303203 -135483252 + MER20 DNA MER1_type 1 202 -17 671 121 0 0 chr12 8304938 8305037 -135481418 + HY3 scRNA scRNA 2 100 -1 25 0 0 0 chr12 8305037 8305062 -135481393 + AT_rich Low_complexity Low_complexity 1 25 0 2248 86 0 3 chr12 8305062 8305366 -135481089 + AluSc SINE Alu 1 303 -6 2068 100 0 19 chr12 8305828 8306137 -135480318 - AluSg SINE Alu -7 303 1 1707 162 0 4 chr12 8306260 8306531 -135479924 - AluJb SINE Alu -38 274 5 1879 116 10 3 chr12 8306604 8306898 -135479557 + AluSx SINE Alu 4 299 -13 2367 70 0 3 chr12 8306900 8307199 -135479256 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr12 8307360 8307382 -135479073 + AT_rich Low_complexity Low_complexity 1 22 0 502 151 75 0 chr12 8308375 8308468 -135477987 - HY3 scRNA scRNA -1 100 1 2112 106 3 0 chr12 8308477 8308785 -135477670 - AluSp SINE Alu 0 309 1 391 192 0 0 chr12 8308787 8308860 -135477595 - MER5A DNA MER1_type -115 74 2 304 113 113 19 chr12 8309071 8309124 -135477331 + MER81 DNA DNA 36 93 -21 503 108 0 0 chr12 8309422 8309487 -135476968 + pTR5 LTR ERV1 326 390 -2048 1515 155 4 0 chr12 8309487 8309726 -135476729 - AluSx SINE Alu -72 240 1 266 115 0 115 chr12 8309799 8309838 -135476617 - AluSp SINE Alu -131 172 139 2064 142 0 0 chr12 8309838 8310141 -135476314 - AluSx SINE Alu -9 303 1 266 115 0 115 chr12 8310141 8310153 -135476302 - AluSp SINE Alu -164 139 127 2068 116 0 0 chr12 8310177 8310469 -135475986 - AluSg SINE Alu -18 292 1 1636 190 45 25 chr12 8310480 8310833 -135475622 + MLT1B-int LTR MaLR 1371 1730 -5 2113 155 34 16 chr12 8310839 8311220 -135475235 + MLT1B LTR MaLR 1 388 -2 928 298 143 41 chr12 8311221 8311720 -135474735 - L2 LINE L2 -157 3156 2709 849 244 44 131 chr12 8311720 8311875 -135474580 + MSTD LTR MaLR 1 168 -228 1719 113 0 113 chr12 8311875 8312212 -135474243 + AluJo SINE Alu 1 299 -13 849 244 44 131 chr12 8312212 8312450 -135474005 + MSTD LTR MaLR 168 355 -41 2243 94 0 19 chr12 8312450 8312769 -135473686 - AluSq SINE Alu 0 313 1 849 244 44 131 chr12 8312769 8312808 -135473647 + MSTD LTR MaLR 355 396 0 928 298 143 41 chr12 8312808 8313048 -135473407 - L2 LINE L2 -604 2709 2328 3402 123 94 62 chr12 8313202 8313333 -135473122 - L1MC2 LINE L1 -9 6335 6210 197 62 0 31 chr12 8313333 8313365 -135473090 + (TTA)n Simple_repeat Simple_repeat 2 32 0 1867 122 0 0 chr12 8313374 8313644 -135472811 - AluSx SINE Alu -42 270 1 3402 123 94 62 chr12 8313644 8313809 -135472646 - L1MC2 LINE L1 -141 6203 6045 2089 114 10 0 chr12 8313809 8314108 -135472347 + AluSq SINE Alu 1 302 -11 3402 123 94 62 chr12 8314108 8314494 -135471961 - L1MC2 LINE L1 -299 6045 5620 294 29 0 0 chr12 8314518 8314552 -135471903 - U2 snRNA snRNA -152 36 3 2360 80 3 0 chr12 8314799 8315111 -135471344 - AluSp SINE Alu 0 313 1 684 86 11 0 chr12 8315111 8315204 -135471251 - L1MA1 LINE L1 -45 6257 6164 1338 244 81 50 chr12 8316100 8316596 -135469859 - L1ME3 LINE L1 -31 6131 5621 2045 120 3 0 chr12 8316627 8316919 -135469536 - AluSx SINE Alu -19 293 1 264 338 47 37 chr12 8316964 8317196 -135469259 - MIR3 SINE MIR -25 237 6 325 157 100 14 chr12 8317225 8317295 -135469160 - MER81 DNA DNA -3 111 36 497 149 5 234 chr12 8317506 8317581 -135468874 + MER5A DNA MER1_type 2 92 -97 2426 66 0 0 chr12 8317581 8317882 -135468573 + AluY SINE Alu 1 301 -10 497 149 5 234 chr12 8317882 8317893 -135468562 + MER5A DNA MER1_type 92 104 -85 1586 164 4 4 chr12 8317893 8318174 -135468281 + AluJb SINE Alu 1 281 -31 186 43 0 0 chr12 8318179 8318202 -135468253 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 497 149 5 234 chr12 8318202 8318309 -135468146 + MER5A DNA MER1_type 108 156 -33 209 284 45 30 chr12 8318586 8318653 -135467802 - L3 LINE CR1 -431 1146 1079 2306 81 0 0 chr12 8318718 8319014 -135467441 - AluSx SINE Alu -16 296 1 1550 85 0 31 chr12 8319187 8319410 -135467045 + AluSg/x SINE Alu 95 310 0 456 123 37 12 chr12 8319422 8319503 -135466952 + AluSg/x SINE Alu 215 297 -12 22 0 0 0 chr12 8319591 8319613 -135466842 + AT_rich Low_complexity Low_complexity 1 22 0 1376 144 5 0 chr12 8319625 8319819 -135466636 - AluSx SINE Alu -117 195 1 2314 93 3 13 chr12 8320100 8320413 -135466042 - AluSx SINE Alu 0 312 3 3819 188 46 73 chr12 8320560 8321517 -135464938 - MER21A LTR ERV1 0 931 1 2249 96 4 0 chr12 8321979 8322284 -135464171 - AluSp SINE Alu 0 306 1 1678 165 0 86 chr12 8322398 8322531 -135463924 + AluJo SINE Alu 1 144 -168 2074 148 0 3 chr12 8322531 8322841 -135463614 - AluSx SINE Alu -3 309 1 1678 165 0 86 chr12 8322841 8323046 -135463409 + AluJo SINE Alu 144 310 -2 456 93 0 0 chr12 8323405 8323480 -135462975 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 1736 99 119 0 chr12 8323480 8323733 -135462722 - AluSc SINE Alu -26 283 1 105 152 0 0 chr12 8323930 8324081 -135462374 + GC_rich Low_complexity Low_complexity 1 151 0 264 247 76 13 chr12 8324081 8324239 -135462216 + (CGCGG)n Simple_repeat Simple_repeat 3 170 0 230 371 38 0 chr12 8324214 8324319 -135462136 - SUBTEL_sa Satellite Satellite -43 131 23 * 213 124 0 0 chr12 8324319 8324602 -135461853 + GC_rich Low_complexity Low_complexity 1 283 0 200 286 18 18 chr12 8324621 8324733 -135461722 + (CCG)n Simple_repeat Simple_repeat 1 112 0 2041 97 14 4 chr12 8324887 8325188 -135461267 + AluSg SINE Alu 1 304 0 784 171 0 0 chr12 8325467 8325596 -135460859 + AluJo/FLAM SINE Alu 3 131 -171 274 161 18 0 chr12 8325598 8325654 -135460801 + Alu SINE Alu 245 301 -1 324 306 69 35 chr12 8325666 8325810 -135460645 - MIR SINE MIR -77 185 37 416 189 33 0 chr12 8326164 8326254 -135460201 + L1MC3 LINE L1 7476 7568 -217 2174 98 20 3 chr12 8326262 8326558 -135459897 + AluSx SINE Alu 1 301 -11 322 171 24 12 chr12 8326672 8326754 -135459701 + L1MC3 LINE L1 7608 7690 -95 2068 126 24 0 chr12 8326757 8327050 -135459405 + AluSc SINE Alu 1 300 -9 2219 114 0 7 chr12 8327061 8327358 -135459097 + AluSq SINE Alu 1 295 -18 350 134 31 26 chr12 8327365 8327588 -135458867 + AluJo SINE Alu 3 302 0 295 119 0 0 chr12 8327664 8327706 -135458749 + Alu SINE Alu 1 42 -257 894 184 0 0 chr12 8327757 8327904 -135458551 + FRAM SINE Alu 1 142 -34 1071 115 6 0 chr12 8327904 8328061 -135458394 - AluSg/x SINE Alu 0 312 155 322 171 24 12 chr12 8328272 8328354 -135458101 + L1MC3 LINE L1 7608 7690 -95 2188 116 10 0 chr12 8328357 8328651 -135457804 + AluSg SINE Alu 1 297 -13 2249 95 3 10 chr12 8328653 8328947 -135457508 + AluSg SINE Alu 3 294 -16 193 299 30 15 chr12 8329012 8329079 -135457376 + L3 LINE CR1 1079 1146 -431 25 0 0 0 chr12 8329248 8329273 -135457182 + AT_rich Low_complexity Low_complexity 1 25 0 943 108 0 15 chr12 8329940 8330070 -135456385 - AluSg/x SINE Alu -102 208 81 2470 73 0 7 chr12 8330070 8330371 -135456084 - AluY SINE Alu -12 299 1 23 0 0 0 chr12 8330656 8330679 -135455776 + AT_rich Low_complexity Low_complexity 1 23 0 2076 108 3 3 chr12 8330679 8330965 -135455490 - AluSx SINE Alu -24 288 3 1530 133 0 0 chr12 8331141 8331351 -135455104 - AluSx SINE Alu -102 210 1 1627 140 0 0 chr12 8331364 8331593 -135454862 - AluSg/x SINE Alu -2 310 82 927 295 10 10 chr12 8331593 8331891 -135454564 - AluYa5 SINE Alu -3 298 1 198 0 0 0 chr12 8332377 8332399 -135454056 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1708 164 4 7 chr12 8332401 8332682 -135453773 - AluSx SINE Alu -30 282 3 520 92 255 0 chr12 8332682 8332780 -135453675 - Tigger7 DNA MER2_type -610 123 1 2014 101 4 0 chr12 8332803 8333070 -135453385 - AluSp SINE Alu -24 289 22 2221 118 3 0 chr12 8333644 8333941 -135452514 + AluSx SINE Alu 1 298 -14 869 277 7 17 chr12 8333949 8334249 -135452206 + AluSg SINE Alu 3 299 -1 2362 112 0 0 chr12 8334826 8335129 -135451326 + AluSq SINE Alu 1 303 -10 23 0 0 0 chr12 8335390 8335413 -135451042 + GC_rich Low_complexity Low_complexity 1 23 0 1306 139 10 10 chr12 8336021 8336222 -135450233 - AluSx SINE Alu -111 201 1 311 298 78 35 chr12 8336222 8336363 -135450092 - HAL1 LINE L1 -173 2334 2188 195 139 0 0 chr12 8336367 8336403 -135450052 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr12 8336527 8336548 -135449907 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr12 8336684 8336705 -135449750 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr12 8336914 8336937 -135449518 + AT_rich Low_complexity Low_complexity 1 23 0 906 115 0 0 chr12 8337238 8337351 -135449104 - AluSq/x SINE Alu -200 113 1 585 151 0 0 chr12 8337351 8337437 -135449018 - AluS SINE Alu -225 87 2 440 214 74 16 chr12 8337439 8337654 -135448801 + LTR23 LTR ERV1 235 437 0 225 223 138 85 chr12 8337656 8337786 -135448669 - L2 LINE L2 -2 3311 3175 533 175 123 9 chr12 8337805 8337919 -135448536 + FLAM_A SINE Alu 12 138 -4 2180 106 33 7 chr12 8337931 8338234 -135448221 + AluSq SINE Alu 1 311 -2 2421 76 0 7 chr12 8338314 8338616 -135447839 + AluY SINE Alu 7 306 -5 2200 102 41 0 chr12 8338824 8339118 -135447337 + AluSx SINE Alu 1 306 -6 2253 45 0 34 chr12 8339221 8339557 -135446898 - AluY SINE Alu 0 328 3 669 146 38 38 chr12 8339758 8339885 -135446570 + Charlie5 DNA MER1_type 2401 2530 -55 1896 149 3 14 chr12 8339885 8340181 -135446274 - AluSx SINE Alu -17 295 3 669 146 38 38 chr12 8340181 8340238 -135446217 + Charlie5 DNA MER1_type 2529 2585 0 2548 77 0 3 chr12 8340668 8340980 -135445475 - AluY SINE Alu 0 311 1 2344 86 3 10 chr12 8340980 8341284 -135445171 - AluSq SINE Alu -11 302 1 1751 137 58 41 chr12 8341675 8341967 -135444488 - AluJo SINE Alu -13 299 3 483 91 0 152 chr12 8342039 8342075 -135444380 + AluSc SINE Alu 2 42 -267 2143 98 39 0 chr12 8342075 8342360 -135444095 - AluSq SINE Alu -17 296 1 483 91 0 152 chr12 8342360 8342412 -135444043 + AluSc SINE Alu 42 76 -233 2296 63 42 0 chr12 8342412 8342697 -135443758 + AluY SINE Alu 2 298 -13 352 182 0 0 chr12 8342791 8342857 -135443598 + Charlie5 DNA MER1_type 129 194 -2418 869 154 99 0 chr12 8342859 8343080 -135443375 + Charlie5 DNA MER1_type 2382 2624 0 2397 49 3 62 chr12 8343815 8344139 -135442316 - AluY SINE Alu -6 305 1 245 333 0 11 chr12 8344139 8344229 -135442226 + L2 LINE L2 3221 3309 -4 2596 62 0 0 chr12 8344329 8344634 -135441821 + AluSg SINE Alu 1 305 -5 189 0 0 0 chr12 8345127 8345148 -135441307 + (A)n Simple_repeat Simple_repeat 1 21 0 221 0 0 33 chr12 8345277 8345307 -135441148 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 2180 102 7 0 chr12 8346095 8346388 -135440067 - AluSp SINE Alu -17 296 2 747 197 7 7 chr12 8346433 8346570 -135439885 + FLAM_C SINE Alu 2 138 -5 558 228 0 32 chr12 8347833 8347956 -135438499 + FLAM_A SINE Alu 1 119 -14 2013 125 3 20 chr12 8349088 8349383 -135437072 + AluSq SINE Alu 6 295 -18 2247 95 3 0 chr12 8349386 8349680 -135436775 + AluY SINE Alu 6 300 -11 709 174 123 58 chr12 8349758 8349913 -135436542 - FRAM SINE Alu -12 164 1 203 213 43 0 chr12 8350362 8350409 -135436046 + MIR SINE MIR 183 231 -31 2444 82 0 0 chr12 8350465 8350768 -135435687 + AluY SINE Alu 1 303 -8 2113 107 21 3 chr12 8351280 8351571 -135434884 + AluSp SINE Alu 1 296 -17 1131 137 11 33 chr12 8351924 8352107 -135434348 + FRAM SINE Alu 1 172 -4 654 151 48 48 chr12 8352603 8352729 -135433726 + FLAM_A SINE Alu 1 126 -7 2365 88 0 3 chr12 8353149 8353443 -135433012 - AluSc SINE Alu -16 293 1 1710 130 0 86 chr12 8353448 8353763 -135432692 - AluSx SINE Alu -23 289 2 29 0 0 0 chr12 8354681 8354710 -135431745 + AT_rich Low_complexity Low_complexity 1 29 0 652 171 16 47 chr12 8354895 8355024 -135431431 + AluJb SINE Alu 1 125 -187 1944 128 4 0 chr12 8355170 8355444 -135431011 + AluSx SINE Alu 1 275 -37 3841 188 38 77 chr12 8355966 8356930 -135429525 - MER21A LTR ERV1 -4 927 1 2258 110 3 0 chr12 8357493 8357792 -135428663 + AluSp SINE Alu 1 300 -13 1064 206 9 138 chr12 8357801 8357937 -135428518 + AluSx SINE Alu 1 66 -246 1706 138 4 4 chr12 8357937 8358184 -135428271 - AluSx SINE Alu -20 292 46 1064 206 9 138 chr12 8358184 8358396 -135428059 + AluSx SINE Alu 66 304 -8 1857 139 64 4 chr12 8358817 8359098 -135427357 + AluSx SINE Alu 1 298 -14 368 148 123 0 chr12 8359115 8359196 -135427259 + Tigger7 DNA MER2_type 31 121 -584 1478 148 12 136 chr12 8359196 8359534 -135426921 + AluSq SINE Alu 1 296 -7 704 134 0 0 chr12 8359552 8359649 -135426806 - AluJ/FLAM SINE Alu -214 98 2 538 98 49 0 chr12 8360648 8360730 -135425725 - L1PA8 LINE L1 -1 6171 6086 2185 88 32 0 chr12 8361850 8362134 -135424321 + AluSg SINE Alu 1 293 -17 2386 78 0 3 chr12 8362527 8362820 -135423635 + AluSp SINE Alu 1 292 -21 2316 112 0 3 chr12 8362939 8363243 -135423212 - AluSq SINE Alu -10 303 1 348 236 122 24 chr12 8363243 8363366 -135423089 + L2 LINE L2 2687 2821 -493 1838 154 35 0 chr12 8363451 8363737 -135422718 - AluSq SINE Alu -17 296 1 2070 88 49 14 chr12 8363836 8364120 -135422335 + AluSq SINE Alu 1 294 -19 491 201 42 74 chr12 8364493 8364625 -135421830 - LTR41 LTR ERVL -590 183 57 2581 45 0 19 chr12 8364625 8364934 -135421521 + AluY SINE Alu 1 303 -8 491 201 42 74 chr12 8364934 8364990 -135421465 - LTR41 LTR ERVL -716 57 1 198 103 0 0 chr12 8365625 8365654 -135420801 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 2360 64 0 42 chr12 8365963 8366276 -135420179 - AluSp SINE Alu -13 300 1 1192 142 6 0 chr12 8366291 8366474 -135419981 + AluSg/x SINE Alu 123 306 -6 503 197 30 23 chr12 8366474 8366606 -135419849 + L1MB8 LINE L1 5876 6008 -170 2031 131 7 3 chr12 8366619 8366910 -135419545 + AluJb SINE Alu 1 292 -20 2522 70 0 13 chr12 8366931 8367246 -135419209 + AluY SINE Alu 1 311 0 381 310 14 28 chr12 8367246 8367462 -135418993 + L1MC4a LINE L1 5736 5948 -1860 2261 86 7 0 chr12 8367623 8367913 -135418542 + AluSp SINE Alu 6 297 -16 2505 49 0 0 chr12 8368014 8368322 -135418133 + AluY SINE Alu 1 308 0 511 357 13 21 chr12 8368503 8368741 -135417714 + L1MEd LINE L1 674 909 -5463 1049 98 0 0 chr12 8368761 8368893 -135417562 + AluSq/x SINE Alu 1 132 -181 2177 113 3 0 chr12 8368893 8369201 -135417254 + AluSq SINE Alu 1 309 0 1538 122 0 0 chr12 8369216 8369421 -135417034 + AluSx SINE Alu 5 209 -103 810 177 0 0 chr12 8369516 8369640 -135416815 - FLAM_A SINE Alu -8 134 11 2455 74 0 3 chr12 8369654 8369950 -135416505 - AluSp SINE Alu -18 295 1 341 307 73 39 chr12 8369950 8370122 -135416333 + L1MEd LINE L1 2257 2437 -3947 31 0 0 0 chr12 8370120 8370151 -135416304 + AT_rich Low_complexity Low_complexity 1 31 0 * 2004 135 0 22 chr12 8370253 8370571 -135415884 + AluSx SINE Alu 1 311 -1 2348 204 8 22 chr12 8370574 8370840 -135415615 - L1MB7 LINE L1 -146 6038 5770 1932 145 3 0 chr12 8370840 8371136 -135415319 - AluSx SINE Alu -15 297 1 2348 204 8 22 chr12 8371136 8371242 -135415213 - L1MB7 LINE L1 -414 5770 5664 3541 70 7 11 chr12 8371242 8371697 -135414758 - MLT2A2 LTR ERVL 0 453 1 2348 204 8 22 chr12 8371697 8371814 -135414641 - L1MB7 LINE L1 -520 5664 5555 439 95 0 0 chr12 8371819 8371882 -135414573 + MER41A LTR ERV1 400 462 -92 1571 109 0 28 chr12 8371897 8372145 -135414310 - AluSp SINE Alu 0 313 73 1879 113 34 20 chr12 8372145 8372437 -135414018 - AluSx SINE Alu -15 297 2 21 0 0 0 chr12 8372437 8372458 -135413997 + AT_rich Low_complexity Low_complexity 1 21 0 1783 130 4 0 chr12 8372465 8372726 -135413729 - AluSx SINE Alu -50 262 1 1195 139 0 0 chr12 8372913 8373100 -135413355 - AluSq SINE Alu -4 309 123 1815 141 7 10 chr12 8373118 8373408 -135413047 - AluSx SINE Alu -23 289 1 2117 94 0 0 chr12 8373468 8373755 -135412700 + AluSx SINE Alu 11 297 -15 2030 125 0 3 chr12 8373892 8374197 -135412258 + AluSg SINE Alu 1 304 -6 1360 185 68 43 chr12 8374397 8374678 -135411777 + AluJb SINE Alu 4 291 -11 1950 122 10 10 chr12 8374738 8375033 -135411422 + AluSg SINE Alu 1 295 -15 2104 92 0 7 chr12 8376569 8376862 -135409593 + AluSg SINE Alu 1 291 -19 2105 112 3 0 chr12 8376868 8377164 -135409291 + AluSp SINE Alu 1 297 -16 2204 76 0 20 chr12 8377211 8377513 -135408942 + AluSx SINE Alu 1 296 -16 1943 101 73 0 chr12 8377670 8377958 -135408497 + AluSq SINE Alu 1 309 -4 824 204 0 0 chr12 8377965 8378107 -135408348 + AluJb SINE Alu 140 281 -31 632 109 11 0 chr12 8378101 8378193 -135408262 - AluSp/q SINE Alu -6 307 215 * 189 0 0 0 chr12 8378497 8378518 -135407937 + (A)n Simple_repeat Simple_repeat 1 21 0 1809 128 24 14 chr12 8378522 8378811 -135407644 + AluSx SINE Alu 5 296 -16 1838 114 32 4 chr12 8378813 8379094 -135407361 + AluSp SINE Alu 4 292 -21 2258 95 3 0 chr12 8379347 8379653 -135406802 + AluSc SINE Alu 1 307 -2 2145 123 0 0 chr12 8379656 8379966 -135406489 + AluSg SINE Alu 1 310 0 1825 161 7 3 chr12 8379968 8380273 -135406182 - AluSx SINE Alu -6 306 1 563 130 0 0 chr12 8381002 8381079 -135405376 + AluS SINE Alu 2 78 -234 480 113 0 0 chr12 8381074 8381136 -135405319 - AluSx SINE Alu -35 277 216 * 910 126 0 0 chr12 8381144 8381279 -135405176 - AluSx SINE Alu -177 135 1 589 165 25 25 chr12 8381298 8381419 -135405036 - FLAM_A SINE Alu -21 121 1 361 167 0 0 chr12 8381765 8381831 -135404624 - AluS SINE Alu -5 296 231 1329 108 5 0 chr12 8381833 8382018 -135404437 - AluSq SINE Alu -127 186 1 1850 78 114 14 chr12 8382108 8382389 -135404066 - AluSc SINE Alu 0 309 1 22 0 0 0 chr12 8383390 8383412 -135403043 + AT_rich Low_complexity Low_complexity 1 22 0 1287 186 25 68 chr12 8383455 8383600 -135402855 + AluJb SINE Alu 1 151 -161 2267 42 0 62 chr12 8383600 8383909 -135402546 + AluY SINE Alu 8 297 -14 1287 186 25 68 chr12 8383909 8384086 -135402369 + AluJb SINE Alu 151 309 -3 2339 87 0 0 chr12 8384242 8384552 -135401903 - AluSx SINE Alu -2 310 1 1677 116 135 4 chr12 8385448 8385715 -135400740 + AluSx SINE Alu 1 302 0 1701 152 0 35 chr12 8386287 8386403 -135400052 - AluSx SINE Alu -8 304 185 2269 84 3 0 chr12 8386403 8386700 -135399755 + AluSp SINE Alu 4 301 -12 1701 152 0 35 chr12 8386700 8386898 -135399557 - AluSx SINE Alu -127 185 1 2087 122 0 6 chr12 8386907 8387218 -135399237 - AluSx SINE Alu -3 309 1 2045 93 10 10 chr12 8387231 8387531 -135398924 - AluSx SINE Alu -12 300 1 2483 40 0 7 chr12 8388303 8388600 -135397855 - AluY SINE Alu -16 295 1 2213 97 0 0 chr12 8389668 8389968 -135396487 + AluY SINE Alu 1 300 -11 2090 96 6 19 chr12 8390022 8390336 -135396119 + AluSx SINE Alu 1 310 -2 198 257 146 21 chr12 8391080 8391224 -135395231 - L2 LINE L2 -108 3205 3044 3877 96 12 50 chr12 8391417 8391813 -135394642 + MER41A LTR ERV1 1 411 -143 2213 82 0 0 chr12 8391813 8392093 -135394362 + AluSq SINE Alu 14 293 -20 2101 97 10 7 chr12 8392103 8392402 -135394053 + AluSp SINE Alu 1 300 -13 3877 96 12 50 chr12 8392402 8392570 -135393885 + MER41A LTR ERV1 420 554 0 2366 82 0 3 chr12 8392813 8393118 -135393337 - AluSc SINE Alu -5 304 1 191 222 0 0 chr12 8393142 8393178 -135393277 + L2 LINE L2 2514 2549 -765 570 308 98 37 chr12 8393495 8393933 -135392522 - L2 LINE L2 -304 3009 2548 646 33 11 11 chr12 8394006 8394096 -135392359 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 251 253 12 96 chr12 8394096 8394179 -135392276 + L2 LINE L2 3190 3265 -48 503 250 91 0 chr12 8394184 8394316 -135392139 + MER5A DNA MER1_type 18 161 -28 2444 62 0 0 chr12 8394424 8394728 -135391727 + AluSx SINE Alu 1 304 -8 1476 167 21 11 chr12 8395156 8395246 -135391209 + AluJo SINE Alu 29 117 -195 432 0 0 0 chr12 8395246 8395294 -135391161 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 1476 167 21 11 chr12 8395294 8395484 -135390971 + AluJo SINE Alu 117 312 0 1214 121 0 0 chr12 8395489 8395663 -135390792 + AluSg/x SINE Alu 136 309 0 291 211 28 0 chr12 8395865 8395936 -135390519 + MER5A DNA MER1_type 77 149 -40 186 43 0 0 chr12 8395940 8395963 -135390492 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1950 108 21 0 chr12 8396160 8396447 -135390008 - AluSq SINE Alu -20 293 1 626 143 0 0 chr12 8397126 8397224 -135389231 + HY1 scRNA scRNA 14 111 -1 24 32 0 0 chr12 8397237 8397268 -135389187 + AT_rich Low_complexity Low_complexity 1 31 0 2217 74 11 0 chr12 8397416 8397723 -135388732 + AluY SINE Alu 1 310 0 2008 104 40 0 chr12 8397753 8398050 -135388405 + AluY SINE Alu 1 309 -2 2281 93 3 0 chr12 8398070 8398380 -135388075 + AluY SINE Alu 1 311 0 1866 147 0 13 chr12 8398404 8398711 -135387744 - AluSg SINE Alu -7 303 1 1653 153 11 14 chr12 8398799 8399081 -135387374 - AluSx SINE Alu -23 289 9 320 161 0 16 chr12 8399103 8399165 -135387290 - AluSq SINE Alu -4 297 237 4689 141 31 33 chr12 8399168 8400542 -135385913 - pTR5 LTR ERV1 0 2438 743 1655 96 8 4 chr12 8400542 8400782 -135385673 - AluSq SINE Alu -72 241 1 1030 90 0 0 chr12 8400782 8400915 -135385540 - AluSg SINE Alu -177 133 1 225 94 0 0 chr12 8400917 8400949 -135385506 + (T)n Simple_repeat Simple_repeat 1 32 0 1026 114 0 0 chr12 8400953 8401093 -135385362 - AluSc SINE Alu -169 140 1 827 103 0 8 chr12 8401152 8401269 -135385186 - AluSg/x SINE Alu -18 294 179 210 154 0 0 chr12 8401273 8401312 -135385143 + T-rich Low_complexity Low_complexity 4 42 0 2151 91 10 0 chr12 8401322 8401619 -135384836 - AluSp SINE Alu -13 300 1 1701 155 17 3 chr12 8401621 8401917 -135384538 - AluSx SINE Alu -12 300 1 2030 125 0 7 chr12 8401936 8402240 -135384215 - AluSq SINE Alu -11 302 1 299 170 0 0 chr12 8402240 8402293 -135384162 - Alu SINE Alu -5 297 245 377 159 0 0 chr12 8402323 8402386 -135384069 - FLAM SINE Alu -8 125 63 1525 86 53 16 chr12 8402386 8402631 -135383824 + LTR61 LTR ERV1 1 254 -341 2091 114 0 0 chr12 8402635 8402943 -135383512 - AluSg SINE Alu -2 308 1 1422 138 0 0 chr12 8403081 8403291 -135383164 + AluSq SINE Alu 1 210 -103 1999 136 0 0 chr12 8403294 8403596 -135382859 + AluSq SINE Alu 6 307 -6 1785 141 47 10 chr12 8403599 8403898 -135382557 + AluSg SINE Alu 1 310 0 1789 161 3 0 chr12 8403916 8404214 -135382241 + AluSq SINE Alu 2 300 -13 544 213 0 0 chr12 8404226 8404320 -135382135 + AluJb SINE Alu 196 289 -23 2157 100 20 0 chr12 8404342 8404643 -135381812 + AluSx SINE Alu 1 307 -5 492 185 131 8 chr12 8404643 8404773 -135381682 + L1MA9 LINE L1 5802 5947 -365 408 176 15 0 chr12 8404781 8404849 -135381606 - AluJo SINE Alu -117 185 117 1686 133 19 4 chr12 8404923 8405193 -135381262 - L1M2 LINE L1 -546 5766 5493 1226 184 13 92 chr12 8405198 8405335 -135381120 - MLT1A1 LTR MaLR -84 281 135 2125 114 3 10 chr12 8405335 8405643 -135380812 - AluSx SINE Alu -6 306 1 2031 114 0 10 chr12 8405652 8405949 -135380506 - AluSx SINE Alu -18 294 1 1226 184 13 92 chr12 8405949 8406106 -135380349 - MLT1A1 LTR MaLR -238 127 1 1718 149 0 0 chr12 8406110 8406378 -135380077 - AluSx SINE Alu -8 304 37 347 245 40 44 chr12 8406382 8406529 -135379926 - L1MC4 LINE L1 -1346 6976 1941 311 227 39 86 chr12 8406506 8406634 -135379821 + L1MC4 LINE L1 1942 2063 -4363 * 345 292 50 40 chr12 8406560 8406876 -135379579 - L1MC4 LINE L1 -159 6703 5667 309 283 11 22 chr12 8406852 8406944 -135379511 + L1MC4 LINE L1 6615 6705 -1337 * 2167 94 0 0 chr12 8406961 8407248 -135379207 - AluSg SINE Alu -23 287 1 1875 172 0 0 chr12 8407416 8407719 -135378736 + AluJb SINE Alu 1 303 -9 2086 112 3 10 chr12 8407735 8408040 -135378415 - AluSc SINE Alu -5 304 2 1009 333 156 19 chr12 8408732 8408855 -135377600 + L2 LINE L2 1606 1711 -1603 2034 101 42 0 chr12 8408855 8409143 -135377312 + AluSg SINE Alu 1 300 -10 1009 333 156 19 chr12 8409143 8410024 -135376431 + L2 LINE L2 1711 2748 -566 1997 249 51 10 chr12 8410042 8410556 -135375899 + MLT1H LTR MaLR 13 547 -2 296 333 197 19 chr12 8410755 8410968 -135375487 + L2 LINE L2 3016 3266 -6 1480 174 0 52 chr12 8411032 8411319 -135375136 + AluSx SINE Alu 1 272 -40 418 245 92 31 chr12 8412143 8412437 -135374018 - L1ME4a LINE L1 -21 6100 5789 324 256 124 16 chr12 8412669 8412798 -135373657 + L1ME4a LINE L1 5975 6117 -4 885 224 56 0 chr12 8414699 8414931 -135371524 - L1MC4 LINE L1 -1338 6704 6460 335 256 11 131 chr12 8416371 8416547 -135369908 - MLT1I LTR MaLR -18 391 237 526 259 42 17 chr12 8416801 8417064 -135369391 + Charlie7 DNA MER1_type 1 318 -2294 1291 256 57 117 chr12 8417085 8417823 -135368632 + MER21B LTR ERV1 24 717 -146 1981 139 3 0 chr12 8418028 8418337 -135368118 + AluSq SINE Alu 1 310 -3 286 149 0 0 chr12 8418406 8418453 -135368002 - L1M4 LINE L1 -309 5875 5829 1213 219 78 62 chr12 8418454 8418784 -135367671 - MLT1A1 LTR MaLR -2 363 25 2366 118 90 18 chr12 8418784 8419183 -135367272 + MSTA LTR MaLR 1 428 0 1213 219 78 62 chr12 8419183 8419209 -135367246 - MLT1A1 LTR MaLR -340 25 1 265 95 0 0 chr12 8419209 8419251 -135367204 - L1M4 LINE L1 -350 5834 5793 1032 192 63 49 chr12 8419251 8419670 -135366785 + MER4C LTR ERV1 275 464 -1 244 167 183 17 chr12 8419681 8419741 -135366714 + LTR67 LTR ERVL 10 79 -478 2268 120 7 0 chr12 8420013 8420322 -135366133 + AluSx SINE Alu 1 311 -1 1189 278 83 83 chr12 8420736 8421150 -135365305 + ERVL LTR ERVL 2110 2526 -3238 1702 158 0 85 chr12 8421150 8421290 -135365165 + AluJb SINE Alu 1 101 -211 2094 125 7 3 chr12 8421290 8421577 -135364878 + AluSx SINE Alu 1 288 -24 1702 158 0 85 chr12 8421577 8421752 -135364703 + AluJb SINE Alu 101 289 -23 1189 278 83 83 chr12 8421752 8422061 -135364394 + ERVL LTR ERVL 2525 2833 -2931 866 187 58 0 chr12 8422092 8422247 -135364208 + MER5A DNA MER1_type 1 164 -25 633 296 103 38 chr12 8422303 8422729 -135363726 + ERVL LTR ERVL 2993 3446 -2318 261 330 168 11 chr12 8422762 8422947 -135363508 + L1MEd LINE L1 242 455 -5664 473 239 56 56 chr12 8422955 8423008 -135363447 + L1MC4 LINE L1 6857 6909 -1133 2635 40 0 0 chr12 8423008 8423309 -135363146 + AluY SINE Alu 1 301 -10 473 239 56 56 chr12 8423309 8423397 -135363058 + L1MC4 LINE L1 6908 6998 -1044 629 316 43 23 chr12 8423558 8423814 -135362641 + LTR16C LTR ERVL 137 397 -94 3643 27 2 0 chr12 8424179 8424585 -135361870 + L1PA4 LINE L1 5749 6155 0 481 342 22 13 chr12 8424727 8424958 -135361497 + L1MEd LINE L1 493 725 -5394 23 33 0 0 chr12 8425038 8425068 -135361387 + AT_rich Low_complexity Low_complexity 1 30 0 1112 98 24 37 chr12 8425170 8425284 -135361171 + L1PA16 LINE L1 5995 6109 -57 2243 109 3 0 chr12 8425284 8425586 -135360869 + AluSp SINE Alu 1 303 -10 420 55 0 0 chr12 8425587 8425642 -135360813 + (CA)n Simple_repeat Simple_repeat 2 56 0 1112 98 24 37 chr12 8425642 8425689 -135360766 + L1PA16 LINE L1 6108 6156 -10 305 253 105 19 chr12 8425714 8425876 -135360579 + L1ME LINE L1 5617 5792 -329 38 51 0 0 chr12 8425956 8426015 -135360440 + AT_rich Low_complexity Low_complexity 1 59 0 2282 106 3 0 chr12 8426072 8426373 -135360082 + AluSx SINE Alu 1 302 -10 2399 75 3 0 chr12 8426380 8426674 -135359781 + AluY SINE Alu 1 295 -16 314 223 80 78 chr12 8427206 8427424 -135359031 + MIR SINE MIR 76 249 -13 235 250 0 0 chr12 8427760 8427812 -135358643 - L2 LINE L2 -11 3302 3251 814 210 0 6 chr12 8427828 8427985 -135358470 - FRAM SINE Alu -23 153 1 621 241 71 18 chr12 8428014 8428184 -135358271 - MIR SINE MIR -82 180 2 13283 178 25 27 chr12 8429350 8431902 -135354553 + L1PA15 LINE L1 2834 5390 -775 2405 87 0 10 chr12 8431902 8432211 -135354244 + AluSg SINE Alu 1 306 -4 13283 178 25 27 chr12 8432211 8432984 -135353471 + L1PA15 LINE L1 5390 6163 -2 181 393 105 20 chr12 8433521 8433816 -135352639 - L2 LINE L2 -5 3267 2948 2302 94 7 0 chr12 8433868 8434175 -135352280 + AluY SINE Alu 1 309 -2 3685 142 29 29 chr12 8434704 8434729 -135351726 - L1 LINE L1 -1909 5656 5632 2447 144 71 2 chr12 8434729 8435153 -135351302 - L1MA9 LINE L1 0 6312 5860 3685 142 29 29 chr12 8435153 8435809 -135350646 - L1 LINE L1 -1932 5633 4975 2807 204 90 64 chr12 8435826 8435846 -135350609 - L1 LINE L1 -2987 4578 4560 2422 90 0 0 chr12 8435846 8436146 -135350309 - AluSg SINE Alu -10 300 1 2807 204 90 64 chr12 8436146 8436726 -135349729 - L1 LINE L1 -3005 4560 3996 351 21 0 0 chr12 8436726 8436773 -135349682 + MER41B LTR ERV1 502 548 -87 2807 204 90 64 chr12 8436773 8436841 -135349614 - L1 LINE L1 -3569 3996 3931 2152 121 14 0 chr12 8436841 8437138 -135349317 + AluSx SINE Alu 1 301 -11 2807 204 90 64 chr12 8437138 8437225 -135349230 - L1 LINE L1 -3634 3931 3848 3057 164 27 40 chr12 8437225 8437655 -135348800 - MER44D DNA MER2_type -1882 605 127 2556 37 10 3 chr12 8437655 8437954 -135348501 - AluY SINE Alu -10 301 1 3057 164 27 40 chr12 8437954 8438077 -135348378 - MER44D DNA MER2_type -2360 127 4 2807 204 90 64 chr12 8438077 8438559 -135347896 - L1 LINE L1 -3717 3848 3238 929 145 0 0 chr12 8438559 8438690 -135347765 - FLAM_C SINE Alu -2 131 1 2807 204 90 64 chr12 8438690 8438765 -135347690 - L1 LINE L1 -4327 3238 3166 2202 117 7 0 chr12 8438780 8439078 -135347377 - AluSx SINE Alu -12 300 1 1622 204 18 0 chr12 8439088 8439373 -135347082 - AluJo SINE Alu -12 300 11 2941 3 0 0 chr12 8442004 8442316 -135344139 + AluYb8 SINE Alu 1 312 -6 3689 166 22 42 chr12 8442321 8442786 -135343669 + L1MD2 LINE L1 5656 6104 -255 1900 172 3 0 chr12 8442786 8443083 -135343372 + AluJo SINE Alu 1 298 -14 3689 166 22 42 chr12 8443083 8443335 -135343120 + L1MD2 LINE L1 6104 6359 0 408 287 39 116 chr12 8443686 8443778 -135342677 - MIR SINE MIR -10 252 154 222 37 0 0 chr12 8443778 8443805 -135342650 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1865 150 21 7 chr12 8443808 8444095 -135342360 - AluJb SINE Alu -9 303 13 408 287 39 116 chr12 8444095 8444256 -135342199 - MIR SINE MIR -110 152 15 665 312 146 14 chr12 8444895 8445190 -135341265 - LTR16C LTR ERVL 0 491 158 3644 123 48 0 chr12 8445828 8446331 -135340124 + MER1A DNA MER1_type 1 527 0 834 259 75 19 chr12 8446414 8446626 -135339829 + MER58A DNA MER1_type 1 224 0 1901 108 31 0 chr12 8446733 8446992 -135339463 - AluSq SINE Alu -13 300 34 1958 124 38 0 chr12 8447891 8448182 -135338273 + AluSx SINE Alu 1 302 -10 2282 253 84 46 chr12 8448328 8449374 -135337081 - L2 LINE L2 -8 3305 2239 989 171 12 0 chr12 8449865 8450029 -135336426 + FRAM SINE Alu 1 165 -11 25 31 0 0 chr12 8450264 8450296 -135336159 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr12 8450526 8450556 -135335899 + AT_rich Low_complexity Low_complexity 1 30 0 297 0 0 0 chr12 8450590 8450623 -135335832 + (TG)n Simple_repeat Simple_repeat 2 34 0 1933 104 30 11 chr12 8450627 8450896 -135335559 - AluSx SINE Alu -36 276 3 2136 116 3 7 chr12 8450919 8451221 -135335234 - AluSx SINE Alu -11 301 1 370 273 71 60 chr12 8451478 8451547 -135334908 - MIR SINE MIR -6 256 189 2196 129 0 16 chr12 8451547 8451864 -135334591 + AluSx SINE Alu 1 312 0 370 273 71 60 chr12 8451864 8451977 -135334478 - MIR SINE MIR -73 189 72 2274 101 0 13 chr12 8452234 8452542 -135333913 + AluSg SINE Alu 1 304 -6 326 300 142 17 chr12 8452679 8452799 -135333656 - L2 LINE L2 0 3272 3138 1560 74 165 0 chr12 8452889 8453119 -135333336 + L1PA7 LINE L1 5887 6154 0 1776 170 0 16 chr12 8453510 8453822 -135332633 + AluJo SINE Alu 1 307 -5 2258 117 7 0 chr12 8453826 8454133 -135332322 + AluSg SINE Alu 1 309 -1 202 193 0 0 chr12 8454265 8454310 -135332145 - MIR SINE MIR -66 142 108 387 0 0 0 chr12 8454734 8454777 -135331678 + (TG)n Simple_repeat Simple_repeat 1 43 0 742 278 83 14 chr12 8456577 8456893 -135329562 + L1MC/D LINE L1 5468 5800 -362 210 344 83 42 chr12 8457175 8457463 -135328992 + L2 LINE L2 499 798 -2516 219 368 164 9 chr12 8457624 8458081 -135328374 + L2 LINE L2 1182 1709 -1605 262 343 160 73 chr12 8458182 8458564 -135327891 + L2 LINE L2 2856 3270 -2 2165 124 3 13 chr12 8458630 8458945 -135327510 + AluSx SINE Alu 1 312 0 533 172 0 0 chr12 8459782 8459869 -135326586 + L2 LINE L2 3225 3311 -2 404 263 113 31 chr12 8460425 8460827 -135325628 + L1ME3 LINE L1 5449 5951 -211 804 157 50 0 chr12 8460864 8460985 -135325470 + AluSp SINE Alu 123 249 -64 354 91 18 0 chr12 8461060 8461115 -135325340 + AluSp SINE Alu 242 297 -6 425 268 45 62 chr12 8461431 8461610 -135324845 - MIR SINE MIR -50 212 37 495 195 219 18 chr12 8461671 8461835 -135324620 - MIR SINE MIR 0 262 66 1828 154 18 89 chr12 8462024 8462340 -135324115 - MER82 DNA MER2_type -157 496 210 2146 79 36 0 chr12 8462340 8462618 -135323837 + AluSq SINE Alu 1 288 -25 1828 154 18 89 chr12 8462618 8462684 -135323771 - MER82 DNA MER2_type -443 210 141 1109 138 0 0 chr12 8462684 8462844 -135323611 + AluSg/x SINE Alu 135 294 -16 429 276 141 25 chr12 8462932 8463131 -135323324 + MIR SINE MIR 17 238 -24 2356 86 0 10 chr12 8463293 8463597 -135322858 + AluSc SINE Alu 2 302 -7 1304 119 5 0 chr12 8463772 8463957 -135322498 - AluSg/x SINE Alu -2 310 125 1976 168 89 51 chr12 8464090 8464561 -135321894 - LTR2B LTR ERV1 0 490 2 21 71 0 0 chr12 8464834 8464876 -135321579 + AT_rich Low_complexity Low_complexity 1 42 0 281 263 91 10 chr12 8465135 8465234 -135321221 - MIR SINE MIR 0 262 156 1862 130 68 10 chr12 8465323 8465616 -135320839 + AluJo SINE Alu 1 310 -2 203 0 0 36 chr12 8465832 8465860 -135320595 + (CTG)n Simple_repeat Simple_repeat 1 27 0 1804 160 17 3 chr12 8466019 8466319 -135320136 - AluJb SINE Alu 0 312 9 2421 60 3 22 chr12 8466329 8466644 -135319811 - AluY SINE Alu -2 309 1 383 253 48 84 chr12 8466858 8467024 -135319431 - MIR SINE MIR -40 168 9 425 302 44 28 chr12 8467131 8467313 -135319142 - MIR3 SINE MIR -1 207 23 1132 103 0 7 chr12 8467956 8468102 -135318353 - AluSq/x SINE Alu -168 145 1 237 252 156 45 chr12 8468601 8468809 -135317646 + L1ME4a LINE L1 5549 5781 -340 2307 99 0 3 chr12 8468833 8469136 -135317319 + AluSq SINE Alu 1 302 -11 28 48 0 0 chr12 8469324 8469366 -135317089 + AT_rich Low_complexity Low_complexity 1 42 0 361 278 17 80 chr12 8469470 8469591 -135316864 + L1ME4a LINE L1 5835 5962 -159 1918 145 0 7 chr12 8469591 8469887 -135316568 + AluSx SINE Alu 1 294 -18 361 278 17 80 chr12 8469887 8470064 -135316391 + L1ME4a LINE L1 5962 6114 -7 216 156 44 0 chr12 8470438 8470483 -135315972 + (CCTA)n Simple_repeat Simple_repeat 2 48 0 319 283 147 23 chr12 8471359 8471617 -135314838 - L1M4 LINE L1 -2961 3185 2896 2322 91 0 10 chr12 8471875 8472183 -135314272 - AluSx SINE Alu -7 305 1 757 179 0 22 chr12 8472539 8472655 -135313800 + FLAM_C SINE Alu 2 116 -196 216 0 0 0 chr12 8472655 8472679 -135313776 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 757 179 0 22 chr12 8472679 8472696 -135313759 + FLAM_C SINE Alu 116 132 -180 238 281 47 0 chr12 8472696 8472760 -135313695 + MIR3 SINE MIR 142 208 0 2129 113 13 0 chr12 8472839 8473141 -135313314 - AluSp SINE Alu -7 306 1 1984 144 7 0 chr12 8473457 8473762 -135312693 - AluSx SINE Alu -5 307 1 2269 92 0 0 chr12 8474296 8474602 -135311853 + AluSg SINE Alu 1 306 -4 2237 71 3 16 chr12 8474603 8474913 -135311542 + AluSp SINE Alu 1 306 -7 749 167 24 0 chr12 8475091 8475217 -135311238 + FLAM_C SINE Alu 5 133 0 2601 158 30 2 chr12 8475305 8475779 -135310676 + L1MB2 LINE L1 5682 6168 -3 1611 163 11 3 chr12 8475791 8476097 -135310358 + AluSx SINE Alu 1 308 0 320 255 112 0 chr12 8476177 8476338 -135310117 + L1ME4a LINE L1 5938 6116 -5 2101 99 0 0 chr12 8476861 8477144 -135309311 + AluSx SINE Alu 5 287 -25 30 0 0 0 chr12 8477144 8477174 -135309281 + AT_rich Low_complexity Low_complexity 1 30 0 820 190 67 11 chr12 8478929 8479108 -135307347 + MER5A DNA MER1_type 1 189 0 515 262 81 57 chr12 8479908 8480156 -135306299 - HAL1 LINE L1 -2 2505 2252 2139 98 0 30 chr12 8481116 8481421 -135305034 - AluSg SINE Alu -14 296 1 2020 127 3 0 chr12 8481427 8481719 -135304736 - AluSq SINE Alu -20 293 1 199 258 57 105 chr12 8482389 8482513 -135303942 - MIR SINE MIR -60 148 31 233 29 29 0 chr12 8484448 8484482 -135301973 + (TAA)n Simple_repeat Simple_repeat 2 36 0 2011 117 14 0 chr12 8485035 8485326 -135301129 + AluY SINE Alu 2 296 -15 1921 120 3 23 chr12 8485384 8485683 -135300772 + AluSx SINE Alu 1 293 -19 1926 136 3 0 chr12 8486122 8486417 -135300038 + AluSx SINE Alu 1 296 -16 1028 41 0 63 chr12 8486418 8486733 -135299722 + (GGGAA)n Simple_repeat Simple_repeat 1 295 0 1724 169 0 23 chr12 8487276 8487584 -135298871 + AluJb SINE Alu 1 301 -11 255 331 11 19 chr12 8488376 8488507 -135297948 - MIR SINE MIR -65 143 27 213 163 0 0 chr12 8489568 8489617 -135296838 + (CTG)n Simple_repeat Simple_repeat 1 49 0 2236 79 14 0 chr12 8490089 8490381 -135296074 - AluSp SINE Alu -17 296 1 445 274 65 50 chr12 8490960 8491281 -135295174 + L1MC5 LINE L1 7603 7928 -33 2143 105 0 7 chr12 8491593 8491897 -135294558 + AluSq SINE Alu 1 302 -11 1990 134 0 13 chr12 8491900 8492036 -135294419 + AluSx SINE Alu 1 137 -175 2259 85 10 3 chr12 8492036 8492341 -135294114 + AluSx SINE Alu 1 307 -5 1990 134 0 13 chr12 8492341 8492511 -135293944 + AluSx SINE Alu 137 303 -9 1411 160 144 0 chr12 8492995 8493258 -135293197 - AluSx SINE Alu 0 302 2 210 302 0 0 chr12 8493294 8493347 -135293108 + CT-rich Low_complexity Low_complexity 1 53 0 214 279 115 0 chr12 8494073 8494134 -135292321 + MIR SINE MIR 86 153 -109 2274 98 0 3 chr12 8494313 8494618 -135291837 - AluSq SINE Alu -9 304 1 2179 107 0 0 chr12 8495374 8495672 -135290783 + AluSq SINE Alu 1 298 -15 1656 188 13 0 chr12 8495742 8496040 -135290415 + AluJo SINE Alu 1 302 -10 1771 127 11 21 chr12 8496044 8496327 -135290128 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr12 8496341 8496364 -135290091 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 268 233 0 0 chr12 8496736 8496796 -135289659 + L2 LINE L2 3254 3313 0 2062 122 0 3 chr12 8496831 8497127 -135289328 + AluSg SINE Alu 1 295 -15 2030 122 0 0 chr12 8500429 8500745 -135285710 - AluSx SINE Alu 0 316 1 238 197 175 43 chr12 8501346 8501484 -135284971 + MIR SINE MIR 13 262 0 198 103 0 0 chr12 8503900 8503929 -135282526 + (GGA)n Simple_repeat Simple_repeat 1 29 0 257 232 20 20 chr12 8504822 8504921 -135281534 + C-rich Low_complexity Low_complexity 2 100 0 2168 66 3 78 chr12 8505587 8505919 -135280536 - AluSg SINE Alu -3 307 1 593 188 23 30 chr12 8505981 8506114 -135280341 - FLAM_C SINE Alu -1 132 1 1943 99 41 3 chr12 8506148 8506442 -135280013 + AluSx SINE Alu 1 305 -7 1165 102 12 0 chr12 8506442 8506608 -135279847 + AluSg/x SINE Alu 132 299 -11 619 315 94 9 chr12 8506707 8506920 -135279535 - MIR SINE MIR -26 236 6 416 223 39 23 chr12 8507268 8507398 -135279057 + L1ME LINE L1 5692 5823 -298 679 241 18 12 chr12 8508059 8508225 -135278230 + MIR SINE MIR 59 225 -37 538 183 183 49 chr12 8508283 8508546 -135277909 + L1MC5 LINE L1 7518 7815 -146 2123 103 10 0 chr12 8508598 8508890 -135277565 + AluSx SINE Alu 1 295 -17 1967 113 7 7 chr12 8508960 8509252 -135277203 + AluSg SINE Alu 1 292 -18 278 265 112 0 chr12 8509366 8509464 -135276991 - MIR SINE MIR -41 221 113 2516 39 0 7 chr12 8509847 8510157 -135276298 - AluY SINE Alu -3 308 1 1903 104 47 17 chr12 8511506 8511804 -135274651 - AluSx SINE Alu 0 312 6 183 296 45 0 chr12 8511822 8511866 -135274589 + L2 LINE L2 3244 3289 -24 669 91 4 6 chr12 8511915 8512158 -135274297 + AluSx SINE Alu 2 293 -17 1959 109 31 7 chr12 8512539 8512832 -135273623 - AluSc SINE Alu -9 300 1 2328 77 0 22 chr12 8514144 8514457 -135271998 + AluSx SINE Alu 2 307 -5 863 180 6 6 chr12 8514777 8514933 -135271522 + AluJb SINE Alu 140 298 -14 461 203 106 32 chr12 8514933 8515056 -135271399 + FLAM_A SINE Alu 1 132 -1 1249 163 108 59 chr12 8515340 8515628 -135270827 + AluJo SINE Alu 1 302 0 247 281 45 34 chr12 8515767 8515856 -135270599 + MIR SINE MIR 38 127 -81 2028 104 4 0 chr12 8515909 8516188 -135270267 + AluSx SINE Alu 1 280 -32 219 36 0 0 chr12 8516189 8516217 -135270238 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2297 92 0 3 chr12 8516222 8516528 -135269927 + AluSg SINE Alu 1 305 -5 811 227 152 12 chr12 8516798 8517054 -135269401 - L1ME3A LINE L1 -53 6117 5826 1885 148 3 0 chr12 8517072 8517376 -135269079 - AluSg SINE Alu -5 305 1 791 185 7 0 chr12 8517378 8517513 -135268942 - FRAM SINE Alu -18 158 23 1622 199 55 81 chr12 8517521 8518014 -135268441 - L1ME3A LINE L1 -348 5822 5343 22 0 0 0 chr12 8518819 8518841 -135267614 + GC_rich Low_complexity Low_complexity 1 22 0 1948 97 0 17 chr12 8519036 8519354 -135267101 - AluSg1 SINE Alu 0 313 1 2112 58 14 7 chr12 8519386 8519662 -135266793 + AluSp SINE Alu 1 278 -35 22 35 0 0 chr12 8520560 8520589 -135265866 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr12 8520801 8520841 -135265614 + AT_rich Low_complexity Low_complexity 1 40 0 2254 79 3 10 chr12 8520841 8521145 -135265310 + AluSp SINE Alu 1 302 -11 2203 93 7 0 chr12 8521583 8521884 -135264571 - AluSq SINE Alu -10 303 1 246 216 149 27 chr12 8522623 8522697 -135263758 - MIR3 SINE MIR -4 204 122 2128 93 10 7 chr12 8523478 8523654 -135262801 - AluSc SINE Alu -7 302 123 189 0 0 0 chr12 8523654 8523675 -135262780 + (TG)n Simple_repeat Simple_repeat 2 22 0 2128 93 10 7 chr12 8523675 8523799 -135262656 - AluSc SINE Alu -186 123 1 1036 82 0 0 chr12 8523799 8523934 -135262521 - AluSq/x SINE Alu -177 135 1 1850 128 14 14 chr12 8523994 8524342 -135262113 - AluSq SINE Alu 0 313 1 993 89 13 19 chr12 8524734 8524892 -135261563 + BC200 scRNA scRNA 6 162 -38 1194 124 0 0 chr12 8525086 8525263 -135261192 - AluSg/x SINE Alu -1 311 135 267 31 0 0 chr12 8525263 8525295 -135261160 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1773 142 3 3 chr12 8525295 8525577 -135260878 - AluSp SINE Alu -27 286 5 2419 77 0 0 chr12 8525609 8525920 -135260535 - AluSx SINE Alu -1 311 1 232 258 97 0 chr12 8525993 8526055 -135260400 - L2 LINE L2 0 3313 3246 5510 110 8 41 chr12 8526166 8526367 -135260088 - Tigger1 DNA MER2_type 0 2418 2212 1927 126 0 17 chr12 8526367 8526669 -135259786 + AluSx SINE Alu 1 297 -15 2161 88 3 3 chr12 8526672 8526969 -135259486 + AluSx SINE Alu 1 297 -15 2220 74 0 0 chr12 8526971 8527297 -135259158 + AluY SINE Alu 1 326 0 5510 110 8 41 chr12 8527297 8527475 -135258980 - Tigger1 DNA MER2_type -209 2209 2027 2137 97 0 31 chr12 8527475 8527794 -135258661 + AluY SINE Alu 1 309 -2 5510 110 8 41 chr12 8527794 8528276 -135258179 - Tigger1 DNA MER2_type -391 2027 1577 372 194 0 14 chr12 8528305 8528377 -135258078 - AluJb SINE Alu 0 302 232 969 155 0 133 chr12 8528431 8528695 -135257760 - AluJb SINE Alu -83 229 1 2070 147 43 3 chr12 8528695 8529021 -135257434 - Tigger1 DNA MER2_type -830 1588 1250 335 85 34 0 chr12 8529022 8529081 -135257374 + L1MA3 LINE L1 5310 5370 -935 * 2419 109 3 22 chr12 8529078 8529167 -135257288 + L1MA3 LINE L1 5695 5784 -521 396 59 0 0 chr12 8529167 8529218 -135257237 + (TG)n Simple_repeat Simple_repeat 2 52 0 2419 109 3 22 chr12 8529218 8529495 -135256960 + L1MA3 LINE L1 5784 6054 -251 1340 135 0 5 chr12 8529495 8529695 -135256760 + AluSg/x SINE Alu 85 283 -27 1587 117 32 0 chr12 8529704 8529953 -135256502 + L1MA3 LINE L1 6046 6302 -3 812 152 0 0 chr12 8529953 8530078 -135256377 - FLAM_C SINE Alu -18 125 1 25 0 0 0 chr12 8530084 8530109 -135256346 + AT_rich Low_complexity Low_complexity 1 25 0 6991 128 66 32 chr12 8530111 8530549 -135255906 - Tigger1 DNA MER2_type -1159 1259 837 2201 93 10 3 chr12 8530549 8530849 -135255606 + AluSx SINE Alu 1 302 -10 6991 128 66 32 chr12 8530849 8530915 -135255540 - Tigger1 DNA MER2_type -1581 837 775 2234 96 3 0 chr12 8530915 8531217 -135255238 - AluSp SINE Alu -10 303 1 2120 119 0 10 chr12 8531217 8531528 -135254927 - AluSq SINE Alu -4 309 1 6991 128 66 32 chr12 8531528 8532239 -135254216 - Tigger1 DNA MER2_type -1642 776 1 462 263 42 0 chr12 8532239 8532357 -135254098 - L2 LINE L2 -251 3062 2940 2805 91 77 12 chr12 8532357 8532397 -135254058 - MLT2A1 LTR ERVL 0 444 408 674 34 11 0 chr12 8532397 8532486 -135253969 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 2805 91 77 12 chr12 8532486 8532862 -135253593 - MLT2A1 LTR ERVL -36 408 1 16867 120 36 81 chr12 8532862 8532937 -135253518 - ERVL-A1 LTR ERVL -7 5757 5680 2284 65 14 0 chr12 8532937 8533228 -135253227 + AluY SINE Alu 1 295 -16 16867 120 36 81 chr12 8533228 8533405 -135253050 - ERVL-A1 LTR ERVL -84 5680 5497 2244 83 10 0 chr12 8533405 8533706 -135252749 - AluSp SINE Alu -9 304 1 16867 120 36 81 chr12 8533706 8533844 -135252611 - ERVL-A1 LTR ERVL -267 5497 5354 2173 82 3 30 chr12 8533844 8534147 -135252308 - AluSg SINE Alu -15 295 1 16867 120 36 81 chr12 8534147 8534932 -135251523 - ERVL-A1 LTR ERVL -410 5354 4536 1259 101 0 0 chr12 8534932 8535110 -135251345 - AluSg/x SINE Alu 0 312 135 2163 81 0 3 chr12 8535110 8535394 -135251061 - AluSx SINE Alu -10 302 20 16867 120 36 81 chr12 8535394 8536994 -135249461 - ERVL-A1 LTR ERVL -1226 4538 2932 1001 89 7 0 chr12 8536994 8537129 -135249326 + AluSq/x SINE Alu 1 136 -177 1905 83 0 74 chr12 8537129 8537278 -135249177 + AluSg SINE Alu 1 117 -193 2070 122 3 3 chr12 8537278 8537582 -135248873 + AluSp SINE Alu 1 304 -9 1905 83 0 74 chr12 8537582 8537744 -135248711 + AluSg SINE Alu 117 289 -21 15723 69 3 24 chr12 8537744 8537979 -135248476 - ERVL-A1 LTR ERVL -2752 2902 2664 2596 39 0 0 chr12 8537979 8538290 -135248165 + AluY SINE Alu 1 311 0 15723 69 3 24 chr12 8538290 8539100 -135247355 - ERVL-A1 LTR ERVL -2990 2664 1839 2369 86 0 0 chr12 8539100 8539402 -135247053 + AluSg SINE Alu 1 302 -8 15723 69 3 24 chr12 8539402 8539889 -135246566 - ERVL-A1 LTR ERVL -3815 1839 1419 2028 91 6 70 chr12 8539889 8540220 -135246235 + AluSg SINE Alu 1 310 0 15723 69 3 24 chr12 8540220 8540704 -135245751 - ERVL-A1 LTR ERVL -4235 1419 926 718 111 0 0 chr12 8540704 8540803 -135245652 - AluSx SINE Alu -28 282 184 799 174 0 0 chr12 8540809 8540941 -135245514 - AluSx SINE Alu -179 133 2 1169 309 83 23 chr12 8540943 8541198 -135245257 - L2 LINE L2 -2192 1122 884 2271 93 0 0 chr12 8541198 8541498 -135244957 - AluSg1 SINE Alu -9 300 1 1169 309 83 23 chr12 8541498 8541759 -135244696 - L2 LINE L2 -2430 884 575 23 0 0 0 chr12 8542980 8543003 -135243452 + AT_rich Low_complexity Low_complexity 1 23 0 695 100 0 64 chr12 8543024 8543134 -135243321 - AluSg/x SINE Alu -17 295 193 317 257 57 0 chr12 8543234 8543304 -135243151 - MER91A DNA MER1_type 0 196 123 272 313 202 0 chr12 8543315 8543414 -135243041 - MER91A DNA MER1_type -20 176 58 380 257 135 0 chr12 8543515 8543663 -135242792 - Charlie2a DNA MER1_type -1224 1638 1471 1944 91 58 0 chr12 8543690 8543964 -135242491 - AluSq SINE Alu -18 295 6 581 293 16 42 chr12 8543983 8544174 -135242281 + MER5A DNA MER1_type 1 186 -3 2172 73 17 7 chr12 8544334 8544635 -135241820 - AluY SINE Alu -7 304 1 619 163 0 23 chr12 8544736 8544865 -135241590 - MER53 DNA DNA -63 126 1 2190 99 0 16 chr12 8545028 8545342 -135241113 - AluSc SINE Alu 0 309 1 196 304 54 0 chr12 8546284 8546340 -135240115 + L2 LINE L2 3209 3267 -5 196 328 150 52 chr12 8546610 8546723 -135239732 + L2 LINE L2 2655 2756 -558 2159 83 31 0 chr12 8546723 8547012 -135239443 + AluSx SINE Alu 1 298 -14 196 328 150 52 chr12 8547012 8547185 -135239270 + L2 LINE L2 2756 2969 -345 233 337 14 100 chr12 8547507 8547786 -135238669 - L2 LINE L2 -360 2954 2700 23 0 0 0 chr12 8547832 8547855 -135238600 + AT_rich Low_complexity Low_complexity 1 23 0 279 252 32 41 chr12 8547855 8547978 -135238477 - L1ME4a LINE L1 -64 6057 5936 1964 116 20 3 chr12 8547987 8548288 -135238167 - AluSp SINE Alu -5 308 3 1804 161 3 0 chr12 8548336 8548628 -135237827 + AluSx SINE Alu 6 298 -14 1617 185 7 7 chr12 8548632 8548929 -135237526 + AluJb SINE Alu 1 297 -15 2246 62 24 0 chr12 8548931 8549220 -135237235 + AluY SINE Alu 1 296 -15 255 246 120 113 chr12 8549362 8549611 -135236844 + L1MC4a LINE L1 5428 5492 -680 1605 192 4 0 chr12 8549611 8549892 -135236563 + AluSx SINE Alu 1 282 -30 255 246 120 113 chr12 8549892 8550148 -135236307 + L1MC4a LINE L1 5492 5745 -427 2391 72 0 0 chr12 8550246 8550553 -135235902 - AluY SINE Alu -4 307 1 1095 203 147 15 chr12 8550553 8550819 -135235636 - AluSx SINE Alu -1 301 1 2183 104 3 0 chr12 8550851 8551158 -135235297 - AluSq SINE Alu -5 308 1 317 241 23 35 chr12 8551165 8551252 -135235203 - L1MC4a LINE L1 -1959 5849 5764 2012 110 0 36 chr12 8551256 8551565 -135234890 - AluSx SINE Alu -14 298 1 605 314 41 29 chr12 8551566 8551811 -135234644 - L2 LINE L2 -793 2521 2274 265 91 0 0 chr12 8551811 8551844 -135234611 + U2 snRNA snRNA 1 33 -155 525 263 109 76 chr12 8551868 8552081 -135234374 - L3 LINE CR1 -120 1457 1230 2161 108 7 0 chr12 8552081 8552386 -135234069 - AluSp SINE Alu -4 309 3 525 263 109 76 chr12 8552386 8552476 -135233979 - L3 LINE CR1 -347 1230 1144 21 0 0 0 chr12 8552608 8552629 -135233826 + AT_rich Low_complexity Low_complexity 1 21 0 1016 137 0 0 chr12 8552634 8552787 -135233668 - AluSx SINE Alu -158 154 2 2095 117 7 0 chr12 8552849 8553149 -135233306 - AluSq SINE Alu -6 307 6 1874 130 0 38 chr12 8553286 8553602 -135232853 + AluSq SINE Alu 1 304 -9 290 260 39 0 chr12 8553744 8553821 -135232634 - L3 LINE CR1 -1081 496 417 986 228 25 0 chr12 8553827 8554024 -135232431 + MER20 DNA MER1_type 1 202 -17 217 281 120 60 chr12 8554035 8554138 -135232317 - L3 LINE CR1 -1157 420 302 2033 94 49 0 chr12 8554138 8554426 -135232029 - AluSp SINE Alu -11 302 1 217 281 120 60 chr12 8554426 8554489 -135231966 - L3 LINE CR1 -1275 302 244 2103 117 0 3 chr12 8555526 8555825 -135230630 + AluSq SINE Alu 1 298 -15 876 102 23 0 chr12 8556262 8556390 -135230065 + AluSq/x SINE Alu 6 136 -176 2168 99 0 3 chr12 8556391 8556693 -135229762 + AluSg SINE Alu 1 301 -9 24 32 0 0 chr12 8556693 8556724 -135229731 + AT_rich Low_complexity Low_complexity 1 31 0 2079 100 3 3 chr12 8556944 8557245 -135229210 - AluSq SINE Alu -8 305 5 1195 89 0 0 chr12 8557266 8557434 -135229021 - AluY SINE Alu -10 301 134 2071 100 3 3 chr12 8557463 8557763 -135228692 - AluSq SINE Alu -9 304 5 2227 82 0 7 chr12 8557784 8558087 -135228368 - AluY SINE Alu -10 301 1 189 0 0 0 chr12 8558204 8558225 -135228230 + (T)n Simple_repeat Simple_repeat 1 21 0 2035 117 3 7 chr12 8558425 8558734 -135227721 + AluY SINE Alu 1 308 -3 1386 174 79 4 chr12 8558774 8559027 -135227428 - AluJb SINE Alu -38 274 3 2226 92 0 0 chr12 8559320 8559615 -135226840 + AluY SINE Alu 1 295 -16 2232 67 0 42 chr12 8560076 8560389 -135226066 - AluY SINE Alu -11 300 1 2350 81 3 0 chr12 8560841 8561149 -135225306 - AluSp SINE Alu -4 309 1 670 150 0 0 chr12 8561193 8561293 -135225162 - HY3 scRNA scRNA -1 100 1 222 118 0 0 chr12 8561526 8561560 -135224895 + (T)n Simple_repeat Simple_repeat 1 34 0 1849 131 7 7 chr12 8561626 8561917 -135224538 - AluSx SINE Alu -21 291 1 2239 98 0 0 chr12 8561947 8562242 -135224213 - AluSg SINE Alu -13 297 3 433 164 0 0 chr12 8562243 8562316 -135224139 - MER5A DNA MER1_type -115 74 2 2076 104 0 7 chr12 8562412 8562709 -135223746 + AluSg SINE Alu 2 296 -14 310 209 291 0 chr12 8562815 8562901 -135223554 + MER81 DNA DNA 1 111 -3 2345 71 0 0 chr12 8563017 8563311 -135223144 + AluY SINE Alu 1 294 -17 298 333 52 46 chr12 8563319 8563472 -135222983 + MIR SINE MIR 84 237 -25 2061 110 0 10 chr12 8563537 8563837 -135222618 + AluSx SINE Alu 1 297 -15 1108 216 113 12 chr12 8563840 8564168 -135222287 + L1ME3 LINE L1 5621 5981 -181 1108 119 0 6 chr12 8564170 8564338 -135222117 + AluSg/x SINE Alu 135 301 -11 1780 104 16 49 chr12 8564429 8564737 -135221718 + AluSx SINE Alu 2 299 -13 305 279 0 0 chr12 8564767 8564853 -135221602 + L1ME3 LINE L1 6046 6131 -31 935 92 15 0 chr12 8565746 8565877 -135220578 + L1MA1 LINE L1 6164 6296 -6 303 282 20 54 chr12 8566151 8566223 -135220232 + L1ME2 LINE L1 6021 6087 -77 180 0 0 0 chr12 8566223 8566243 -135220212 + (GA)n Simple_repeat Simple_repeat 1 20 0 303 282 20 54 chr12 8566243 8566319 -135220136 + L1ME2 LINE L1 6087 6164 0 2210 91 0 7 chr12 8567003 8567312 -135219143 + AluSx SINE Alu 1 307 -5 1987 103 23 26 chr12 8567456 8567766 -135218689 + AluSx SINE Alu 4 312 0 2168 115 0 3 chr12 8567967 8568279 -135218176 + AluSx SINE Alu 1 311 -1 845 201 6 136 chr12 8568321 8568520 -135217935 - AluJo SINE Alu -17 295 72 194 0 0 37 chr12 8568520 8568547 -135217908 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1877 111 0 21 chr12 8568550 8568700 -135217755 - AluSp SINE Alu -30 283 140 2272 84 0 13 chr12 8568700 8569009 -135217446 - AluSg SINE Alu -4 306 2 1877 111 0 21 chr12 8569009 8569147 -135217308 - AluSp SINE Alu -173 140 1 845 201 6 136 chr12 8569147 8569282 -135217173 - AluJo SINE Alu -242 70 1 553 180 0 0 chr12 8569308 8569397 -135217058 - AluJ/FLAM SINE Alu -222 90 2 519 179 98 49 chr12 8569458 8569581 -135216874 + FLAM_C SINE Alu 2 130 -3 2146 93 3 7 chr12 8569588 8569879 -135216576 + AluSx SINE Alu 3 292 -20 718 205 0 0 chr12 8569920 8570042 -135216413 + FLAM_C SINE Alu 1 122 -11 257 197 0 49 chr12 8570049 8570107 -135216348 + AluYa5 SINE Alu 127 181 -120 1478 149 45 80 chr12 8570107 8570267 -135216188 + THE1C LTR MaLR 1 165 -263 2583 42 0 0 chr12 8570267 8570576 -135215879 + AluY SINE Alu 1 309 -2 1478 149 45 80 chr12 8570576 8570728 -135215727 + THE1C LTR MaLR 165 354 -74 1981 101 17 0 chr12 8570728 8571015 -135215440 - AluSg SINE Alu -14 296 5 1478 149 45 80 chr12 8571015 8571061 -135215394 + THE1C LTR MaLR 354 400 -28 1885 136 14 14 chr12 8571062 8571357 -135215098 - AluSx SINE Alu -17 295 1 219 32 32 0 chr12 8571369 8571400 -135215055 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2279 62 0 3 chr12 8571400 8571688 -135214767 - AluSq SINE Alu -1 317 1 258 167 0 0 chr12 8571689 8571731 -135214724 + THE1C LTR MaLR 385 426 -2 770 126 17 0 chr12 8571735 8571854 -135214601 + AluJb SINE Alu 181 301 -11 28 0 0 0 chr12 8571855 8571883 -135214572 + AT_rich Low_complexity Low_complexity 1 28 0 1166 80 0 0 chr12 8572208 8572389 -135214066 - AluSg/x SINE Alu 0 314 134 1988 113 10 10 chr12 8572514 8572823 -135213632 - AluSq SINE Alu -4 309 1 2078 112 3 3 chr12 8573218 8573521 -135212934 - AluSx SINE Alu -9 303 1 1451 199 33 33 chr12 8573760 8574096 -135212359 - MER58B DNA MER1_type -5 336 1 2244 82 0 10 chr12 8574495 8574801 -135211654 - AluSg SINE Alu -7 303 1 219 287 200 0 chr12 8574884 8574999 -135211456 + MIR SINE MIR 61 198 -64 2157 109 3 0 chr12 8575158 8575461 -135210994 + AluSx SINE Alu 6 309 -3 202 361 17 25 chr12 8575476 8575595 -135210860 + L2 LINE L2 3178 3295 -18 1680 143 13 27 chr12 8575903 8576203 -135210252 + AluJb SINE Alu 15 310 -2 2504 49 0 3 chr12 8576846 8577152 -135209303 - AluY SINE Alu -6 305 1 1221 185 49 15 chr12 8577934 8578199 -135208256 - AluJo SINE Alu -33 279 6 1606 119 105 35 chr12 8578396 8578681 -135207774 + AluSx SINE Alu 1 305 -7 294 29 0 0 chr12 8578959 8578993 -135207462 + U2 snRNA snRNA 3 36 -152 3501 134 103 35 chr12 8579012 8579557 -135206898 + L1MC2 LINE L1 5609 6116 -228 1943 111 0 0 chr12 8579557 8579827 -135206628 + AluSx SINE Alu 1 270 -42 342 0 0 0 chr12 8579832 8579870 -135206585 + (TC)n Simple_repeat Simple_repeat 2 39 0 * 1098 96 0 0 chr12 8579869 8580026 -135206429 + (TA)n Simple_repeat Simple_repeat 2 158 0 3501 134 103 35 chr12 8579870 8580155 -135206300 + L1MC2 LINE L1 6119 6335 -9 1809 139 3 10 chr12 8580234 8580529 -135205926 - AluSq SINE Alu -20 293 1 865 266 176 3 chr12 8580604 8580893 -135205562 + L2 LINE L2 2320 2658 -656 1995 88 34 20 chr12 8580934 8581060 -135205395 + AluSq SINE Alu 1 124 -189 2409 64 0 10 chr12 8581060 8581374 -135205081 + AluY SINE Alu 1 311 0 1995 88 34 20 chr12 8581374 8581542 -135204913 + AluSq SINE Alu 124 299 -14 1493 171 0 56 chr12 8581560 8581881 -135204574 - AluJo SINE Alu -9 303 1 630 179 4 94 chr12 8581881 8581963 -135204