5317 174 22 8 chr11 31 255 -148783217 - MER4-int LTR ERV1 -1716 5821 5602 242 56 28 0 chr11 255 291 -148783181 + (TA)n Simple_repeat Simple_repeat 1 37 0 5317 174 22 8 chr11 291 1126 -148782346 - MER4-int LTR ERV1 -1935 5602 4747 878 93 34 118 chr11 1128 1259 -148782213 - LTR8 LTR ERV1 -504 187 77 2031 118 10 10 chr11 1259 1556 -148781916 + AluSq SINE Alu 1 297 -16 878 93 34 118 chr11 1556 1628 -148781844 - LTR8 LTR ERV1 -614 77 1 364 210 34 125 chr11 1644 1885 -148781587 - MER4-int LTR ERV1 -3658 1982 1091 278 233 50 53 chr11 1895 2100 -148781372 - MER34C LTR ERV1 -172 413 154 2238 95 0 0 chr11 2180 2476 -148780996 + AluY SINE Alu 1 296 -15 353 191 12 12 chr11 2687 2771 -148780701 - MER4-int LTR ERV1 -6697 840 757 1304 152 56 106 chr11 2790 2876 -148780596 - AluJo SINE Alu -6 306 217 4277 71 5 23 chr11 2876 3440 -148780032 - MER41A LTR ERV1 0 554 1 1304 152 56 106 chr11 3440 3675 -148779797 - AluJo SINE Alu -95 217 1 3458 204 10 31 chr11 3675 4458 -148779014 - MER4-int LTR ERV1 -6770 767 1 1966 99 4 4 chr11 4476 4748 -148778724 + AluSx SINE Alu 1 272 -40 669 225 3 0 chr11 4863 5153 -148778319 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 735 238 4 0 chr11 5182 5886 -148777586 + (TCCA)n Simple_repeat Simple_repeat 1 707 0 287 289 20 130 chr11 7217 7463 -148776009 - L3 LINE CR1 -437 1140 922 189 0 0 0 chr11 14182 14203 -148769269 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 293 275 0 14 chr11 15166 15235 -148768237 + MIR3 SINE MIR 104 171 -37 2298 86 3 3 chr11 19161 19464 -148764008 - AluSp SINE Alu -10 303 1 187 270 25 82 chr11 22918 23077 -148760395 - L2 LINE L2 -190 3082 2933 189 147 0 52 chr11 24421 24537 -148758935 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 299 204 0 56 chr11 24547 24709 -148758763 + CT-rich Low_complexity Low_complexity 2 154 0 576 174 31 6 chr11 24866 25027 -148758445 + CT-rich Low_complexity Low_complexity 2 166 0 211 204 0 0 chr11 25419 25463 -148758009 + CT-rich Low_complexity Low_complexity 2 45 0 235 291 63 13 chr11 28243 28322 -148755150 + MIR SINE MIR 108 190 -72 196 305 52 31 chr11 28439 28572 -148754900 - MIR SINE MIR -52 156 51 269 356 6 23 chr11 29025 29199 -148754273 + CT-rich Low_complexity Low_complexity 1 171 0 204 97 0 0 chr11 31152 31183 -148752289 + (TG)n Simple_repeat Simple_repeat 1 31 0 188 163 0 20 chr11 33880 33929 -148749543 + CT-rich Low_complexity Low_complexity 3 50 0 300 111 0 0 chr11 34026 34071 -148749401 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 209 284 21 11 chr11 34326 34421 -148749051 + CT-rich Low_complexity Low_complexity 2 97 0 315 191 0 0 chr11 34421 34484 -148748988 + C-rich Low_complexity Low_complexity 1 63 0 220 323 32 0 chr11 35000 35093 -148748379 - MIR SINE MIR -74 134 39 276 217 300 17 chr11 36065 36185 -148747287 + L3 LINE CR1 1349 1502 -75 587 200 0 7 chr11 36306 36446 -148747026 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 237 224 0 0 chr11 36582 36631 -148746841 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36639 36685 -148746787 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36704 36750 -148746722 + Alu SINE Alu 237 282 -20 263 184 0 0 chr11 36765 36814 -148746658 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36879 36925 -148746547 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36940 36986 -148746486 + Alu SINE Alu 237 282 -20 195 69 0 0 chr11 36993 37022 -148746450 + (CA)n Simple_repeat Simple_repeat 1 29 0 231 61 0 0 chr11 37052 37085 -148746387 + (CA)n Simple_repeat Simple_repeat 1 33 0 210 91 0 0 chr11 37119 37152 -148746320 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 61 0 0 chr11 37182 37215 -148746257 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 204 0 0 chr11 37253 37302 -148746170 + AluJ/monomer SINE Alu 237 285 -17 249 57 0 0 chr11 37384 37419 -148746053 + (CA)n Simple_repeat Simple_repeat 1 35 0 253 83 0 0 chr11 37419 37455 -148746017 + Alu SINE Alu 250 285 -17 339 111 25 12 chr11 37501 37582 -148745890 + (CA)n Simple_repeat Simple_repeat 2 83 0 235 132 0 0 chr11 37595 37633 -148745839 + Alu SINE Alu 247 284 -18 204 40 0 0 chr11 37633 37658 -148745814 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr11 37688 37719 -148745753 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 37801 37831 -148745641 + (CA)n Simple_repeat Simple_repeat 1 30 0 1907 162 10 36 chr11 38177 38528 -148744944 - MLT1B LTR MaLR -5 385 43 2175 86 17 0 chr11 38528 38818 -148744654 - AluSx SINE Alu -17 295 1 1907 162 10 36 chr11 38818 38854 -148744618 - MLT1B LTR MaLR -347 43 8 999 135 6 6 chr11 38922 39078 -148744394 - AluJb SINE Alu -156 156 1 341 318 26 0 chr11 39703 39854 -148743618 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 265 229 8 8 chr11 39856 39978 -148743494 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 377 328 8 0 chr11 40140 40262 -148743210 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 731 162 12 12 chr11 40315 40488 -148742984 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 266 319 45 70 chr11 42552 42675 -148740797 + MIR SINE MIR 89 209 -53 2090 117 0 3 chr11 42675 42973 -148740499 + AluSx SINE Alu 1 297 -15 266 319 45 70 chr11 42973 43006 -148740466 + MIR SINE MIR 209 241 -21 195 250 54 18 chr11 43020 43076 -148740396 - MIR SINE MIR -58 150 93 322 172 17 103 chr11 49297 49372 -148734100 - MER45A DNA AcHobo -1405 176 113 2296 100 0 0 chr11 49372 49681 -148733791 + AluSx SINE Alu 1 309 -3 322 172 17 103 chr11 49681 49721 -148733751 - MER45A DNA AcHobo -1468 113 71 833 228 103 70 chr11 49864 50052 -148733420 + MLT1C LTR MaLR 9 189 -278 2294 88 0 25 chr11 50052 50369 -148733103 + AluY SINE Alu 1 309 -2 833 228 103 70 chr11 50369 50539 -148732933 + MLT1C LTR MaLR 189 379 -88 234 0 0 0 chr11 51152 51178 -148732294 + (TG)n Simple_repeat Simple_repeat 1 26 0 1720 165 0 14 chr11 51190 51475 -148731997 - AluJb SINE Alu -29 283 3 816 157 8 15 chr11 52554 52688 -148730784 - FLAM_C SINE Alu 0 133 1 1501 145 47 63 chr11 52697 53014 -148730458 - AluJb SINE Alu 0 312 1 351 327 60 36 chr11 53830 54215 -148729257 - L2 LINE L2 -66 3206 2813 246 62 0 0 chr11 54870 54902 -148728570 + (CCCTAA)n Simple_repeat Simple_repeat 1 32 0 300 296 84 56 chr11 55144 55286 -148728186 - L1MC4 LINE L1 -10 8032 7887 392 354 86 48 chr11 55295 55852 -148727620 - L1M4c LINE L1 -4896 1488 911 463 266 36 0 chr11 55996 56186 -148727286 - L1MC4 LINE L1 -993 6900 6616 215 175 35 18 chr11 59756 59813 -148723659 + (CCCG)n Simple_repeat Simple_repeat 3 60 0 280 231 66 0 chr11 64341 64432 -148719040 + (CAGCC)n Simple_repeat Simple_repeat 4 100 0 486 49 0 0 chr11 66870 66931 -148716541 + (CA)n Simple_repeat Simple_repeat 2 62 0 811 190 74 0 chr11 67240 67403 -148716069 + MER45A DNA AcHobo 1 175 -3 211 189 0 0 chr11 67769 67806 -148715666 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 262 260 10 30 chr11 76287 76387 -148707085 + (CACG)n Simple_repeat Simple_repeat 2 99 0 690 130 10 0 chr11 78574 78674 -148704798 - AluY SINE Alu -108 203 103 227 183 14 0 chr11 78919 78990 -148704482 - L1MDb LINE L1 -5202 1207 1136 813 193 175 9 chr11 79111 79334 -148704138 - Tigger7 DNA MER2_type -16 2571 2312 564 211 0 68 chr11 79341 79410 -148704062 - Tigger7 DNA MER2_type -562 171 115 2018 121 7 0 chr11 79410 79734 -148703738 + AluSx SINE Alu 1 326 0 564 211 0 68 chr11 79734 79810 -148703662 - Tigger7 DNA MER2_type -618 115 35 1399 210 20 37 chr11 79835 80092 -148703380 - MLT1B LTR MaLR -48 342 91 1485 112 0 31 chr11 80092 80316 -148703156 + AluSg/x SINE Alu 84 300 -10 1399 210 20 37 chr11 80316 80406 -148703066 - MLT1B LTR MaLR -299 91 1 2067 127 0 0 chr11 81989 82288 -148701184 + AluSx SINE Alu 1 299 -13 2176 125 0 3 chr11 82530 82834 -148700638 + AluSx SINE Alu 1 303 -9 1132 190 73 6 chr11 82849 83137 -148700335 + L1MB3 LINE L1 5875 6182 -1 768 293 6 45 chr11 83152 83486 -148699986 + L1MC4 LINE L1 6703 7023 -1019 1389 218 199 31 chr11 83536 84049 -148699423 + MLT1E1 LTR MaLR 56 654 0 384 185 152 26 chr11 84114 84265 -148699207 + L1MC5 LINE L1 7036 7205 -756 566 188 228 0 chr11 84266 84415 -148699057 + MER20 DNA MER1_type 1 183 -36 1869 213 158 4 chr11 84421 84928 -148698544 + MLT1E LTR MaLR 7 591 -2 889 257 139 46 chr11 85055 85581 -148697891 - MLT1E2 LTR MaLR 0 626 52 594 238 0 21 chr11 85642 85785 -148697687 - MER58A DNA MER1_type 0 140 1 400 314 78 26 chr11 86053 86359 -148697113 + L1MC5 LINE L1 7400 7721 -240 215 200 0 0 chr11 87098 87133 -148696339 + polypurine Low_complexity Low_complexity 1 35 0 1122 166 0 3 chr11 87147 87458 -148696014 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1629 137 4 15 chr11 87559 87830 -148695642 - AluJo SINE Alu -40 272 5 1178 253 102 119 chr11 87835 88426 -148695046 - L1ME1 LINE L1 -223 6012 5413 2275 97 0 0 chr11 88426 88724 -148694748 - AluSq SINE Alu -8 305 8 1178 253 102 119 chr11 88724 89149 -148694323 - L1ME1 LINE L1 -822 5413 4982 899 183 0 12 chr11 89149 89313 -148694159 + AluJb SINE Alu 128 289 -23 1178 253 102 119 chr11 89313 90178 -148693294 - L1ME1 LINE L1 -1253 4982 3978 2089 193 33 0 chr11 90179 90568 -148692904 - MER57A LTR ERV1 0 403 2 940 198 45 0 chr11 90577 90779 -148692693 - MER57A-int LTR ERV1 -47 7490 7280 588 145 23 30 chr11 90779 90910 -148692562 - LTR54B LTR ERV1 -366 132 3 2130 205 13 26 chr11 90910 91378 -148692094 - MER57A-int LTR ERV1 -391 7146 6685 1710 154 48 3 chr11 91692 91984 -148691488 - AluJo SINE Alu -7 305 1 2139 129 3 0 chr11 92209 92518 -148690954 - AluSx SINE Alu -2 310 1 364 320 31 2 chr11 92736 92921 -148690551 - L1M4 LINE L1 -783 5363 5175 1353 111 5 0 chr11 92965 93154 -148690318 - AluY SINE Alu -19 292 103 2188 100 3 3 chr11 93537 93836 -148689636 - AluSx SINE Alu -13 299 1 1937 134 0 49 chr11 93836 94164 -148689308 - AluJb SINE Alu 0 312 1 943 219 24 39 chr11 94166 94234 -148689238 - L1ME1 LINE L1 -4038 2358 2291 1560 166 7 36 chr11 94234 94536 -148688936 - AluJo SINE Alu -19 293 1 943 219 24 39 chr11 94536 94805 -148688667 - L1ME1 LINE L1 -4105 2291 2026 1677 263 69 73 chr11 94815 95658 -148687814 - L1ME1 LINE L1 -5523 873 35 2070 111 0 7 chr11 95826 96124 -148687348 - AluSx SINE Alu -16 296 1 350 276 31 34 chr11 96387 96546 -148686926 + MIR SINE MIR 31 187 -68 450 415 36 36 chr11 96741 97131 -148686341 - L1M4 LINE L1 -1525 4621 4232 304 298 31 19 chr11 97141 97302 -148686170 - L1M4 LINE L1 -1948 4198 4036 890 148 225 11 chr11 97513 97629 -148685843 + AluJo SINE Alu 1 155 -157 1449 158 90 23 chr11 97629 98193 -148685279 + AluJb SINE Alu 3 286 -26 314 98 98 33 chr11 97695 97740 -148685732 + AluJo SINE Alu 87 128 -486 2348 77 7 0 chr11 97740 98039 -148685433 + AluSc SINE Alu 1 301 -8 314 98 98 33 chr11 98039 98219 -148685253 + AluJo SINE Alu 128 614 0 1594 74 5 0 chr11 98667 98870 -148684602 - AluSg/x SINE Alu -20 290 87 2042 62 13 65 chr11 98977 99286 -148684186 - AluY SINE Alu -18 293 1 424 337 58 0 chr11 99286 99458 -148684014 - L1M4 LINE L1 -3109 3037 2856 201 261 25 25 chr11 100062 100181 -148683291 + (TG)n Simple_repeat Simple_repeat 2 120 0 221 240 31 31 chr11 100215 100344 -148683128 + (TG)n Simple_repeat Simple_repeat 2 130 0 243 0 0 0 chr11 100423 100450 -148683022 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr11 100694 100721 -148682751 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 294 20 20 chr11 100753 100906 -148682566 + (TG)n Simple_repeat Simple_repeat 2 154 0 243 0 0 0 chr11 100980 101007 -148682465 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr11 101228 101255 -148682217 + (TG)n Simple_repeat Simple_repeat 2 28 0 371 193 48 24 chr11 101366 101532 -148681940 + (TG)n Simple_repeat Simple_repeat 1 170 0 369 182 18 18 chr11 107806 107916 -148675556 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 616 242 4 4 chr11 107955 108192 -148675280 + (TGGG)n Simple_repeat Simple_repeat 1 237 0 735 192 0 0 chr11 108193 108370 -148675102 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 205 171 0 0 chr11 108393 108428 -148675044 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 327 330 70 70 chr11 109228 109573 -148673899 + L1ME4a LINE L1 5016 5360 -786 1211 288 76 43 chr11 109625 110306 -148673166 + L1ME4a LINE L1 5418 6121 0 205 156 47 47 chr11 116924 117061 -148666411 + (CAGAGA)n Simple_repeat Simple_repeat 1 137 0 207 100 0 0 chr11 118097 118127 -148665345 + (GA)n Simple_repeat Simple_repeat 2 31 0 207 100 0 0 chr11 118637 118667 -148664805 + (GA)n Simple_repeat Simple_repeat 2 31 0 191 133 22 0 chr11 118823 118868 -148664604 + GA-rich Low_complexity Low_complexity 2 47 0 316 265 31 20 chr11 119073 119171 -148664301 - L3 LINE CR1 -12 1565 1467 766 224 12 9 chr11 125700 126022 -148657450 + (TCCA)n Simple_repeat Simple_repeat 1 323 0 332 263 0 0 chr11 126052 126189 -148657283 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 1652 145 106 0 chr11 127692 127974 -148655498 + AluSx SINE Alu 1 312 0 309 385 70 45 chr11 127994 128306 -148655166 + L1MEd LINE L1 841 1160 -4959 365 328 87 45 chr11 128928 129263 -148654209 + L1MEd LINE L1 758 1106 -5013 195 300 0 43 chr11 129796 129866 -148653606 - L2 LINE L2 -20 3293 3227 2569 42 0 3 chr11 130340 130650 -148652822 - AluY SINE Alu -2 309 1 246 240 0 0 chr11 144843 144893 -148638579 + MIR3 SINE MIR 109 158 -50 289 225 8 4 chr11 147491 147738 -148635734 + (CA)n Simple_repeat Simple_repeat 1 248 0 471 285 26 47 chr11 148541 148734 -148634738 + MER53 DNA DNA 1 189 0 189 167 0 0 chr11 150016 150070 -148633402 + (CACAC)n Simple_repeat Simple_repeat 5 58 0 553 235 92 31 chr11 150793 150989 -148632483 - MER63A DNA MER1_type -2 208 1 2186 103 0 13 chr11 151011 151321 -148632151 - AluSp SINE Alu -7 306 1 21 0 0 0 chr11 156490 156511 -148626961 + AT_rich Low_complexity Low_complexity 1 21 0 396 40 0 0 chr11 156601 156651 -148626821 + (GGA)n Simple_repeat Simple_repeat 1 50 0 944 242 60 4 chr11 158075 158356 -148625116 - MLT1B LTR MaLR -93 297 1 233 202 40 40 chr11 159783 159882 -148623590 - MLT1J2 LTR MaLR -88 362 264 221 234 0 0 chr11 161122 161169 -148622303 - L2 LINE L2 -1 3312 3266 180 0 0 0 chr11 161845 161865 -148621607 + (GA)n Simple_repeat Simple_repeat 1 20 0 331 312 70 28 chr11 162828 163322 -148620150 - MLT1H1 LTR MaLR -15 540 28 555 321 29 7 chr11 163508 163782 -148619690 - MLT2F LTR ERVL -4 659 380 789 297 50 28 chr11 163896 164293 -148619179 + MLT1C LTR MaLR 53 458 -9 1099 210 20 0 chr11 164531 164783 -148618689 - MLT1B LTR MaLR -6 384 128 728 276 107 48 chr11 165111 165531 -148617941 + MLT1C LTR MaLR 17 461 -6 2302 73 20 0 chr11 166381 166683 -148616789 + AluY SINE Alu 2 309 -2 3699 140 42 74 chr11 166934 167610 -148615862 - LTR8 LTR ERV1 -2 689 36 2207 119 0 0 chr11 167610 167920 -148615552 - AluSq SINE Alu -3 310 1 3699 140 42 74 chr11 167920 167955 -148615517 - LTR8 LTR ERV1 -655 36 1 387 0 0 0 chr11 179842 179885 -148603587 + (TG)n Simple_repeat Simple_repeat 1 43 0 211 308 15 0 chr11 180034 180099 -148603373 + C-rich Low_complexity Low_complexity 1 66 0 453 147 0 0 chr11 183900 183995 -148599477 + (CAGCC)n Simple_repeat Simple_repeat 4 98 0 891 129 0 0 chr11 183995 184173 -148599299 + (CCCTG)n Simple_repeat Simple_repeat 3 180 0 264 77 0 0 chr11 184172 184211 -148599261 + (CAGCC)n Simple_repeat Simple_repeat 1 39 0 * 1841 168 27 0 chr11 185089 185386 -148598086 + AluJo SINE Alu 1 305 -7 390 292 28 35 chr11 185922 186066 -148597406 - MIR SINE MIR -118 144 2 2183 103 7 0 chr11 192659 192961 -148590511 - AluSp SINE Alu -7 306 3 376 219 10 0 chr11 193728 193824 -148589648 - L1MB3 LINE L1 -58 6125 6029 1970 125 54 0 chr11 204931 205227 -148578245 - AluSx SINE Alu 0 312 1 1257 280 104 10 chr11 209633 210122 -148573350 + L1MB7 LINE L1 5650 6184 0 321 250 104 0 chr11 218995 219091 -148564381 + MIR SINE MIR 23 128 -134 23 68 0 0 chr11 223468 223512 -148559960 + GC_rich Low_complexity Low_complexity 1 44 0 220 173 29 72 chr11 223980 224119 -148559353 + (CCGCG)n Simple_repeat Simple_repeat 2 134 0 * 380 228 31 19 chr11 224034 224196 -148559276 + (CCCCG)n Simple_repeat Simple_repeat 3 166 0 219 254 16 70 chr11 224226 224411 -148559061 + C-rich Low_complexity Low_complexity 4 178 0 302 100 67 0 chr11 225985 226045 -148557427 - MER53 DNA DNA -1 188 125 2255 100 0 19 chr11 226049 226360 -148557112 - AluSc SINE Alu -4 305 1 210 37 0 0 chr11 226361 226388 -148557084 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1856 146 14 0 chr11 226388 226675 -148556797 - AluSx SINE Alu -21 291 1 794 187 74 20 chr11 226691 226894 -148556578 - L1MC2 LINE L1 -11 6333 6120 * 2247 242 23 0 chr11 226893 227468 -148556004 - L1MC1 LINE L1 -248 6085 5498 180 77 0 0 chr11 227959 227985 -148555487 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 180 125 0 0 chr11 228004 228036 -148555436 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 189 154 0 0 chr11 228164 228203 -148555269 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 384 22 0 0 chr11 228806 228851 -148554621 + (TG)n Simple_repeat Simple_repeat 2 46 0 315 156 21 104 chr11 228851 228936 -148554536 - FRAM SINE Alu -152 150 72 1994 138 3 3 chr11 279176 279459 -148504013 - AluSx SINE Alu -29 283 1 774 124 0 83 chr11 279478 279623 -148503849 - FLAM_C SINE Alu 0 133 1 874 280 94 9 chr11 279630 280052 -148503420 - L1MC1 LINE L1 -864 5282 4785 664 250 30 0 chr11 280052 280220 -148503252 - MER20 DNA MER1_type 0 219 47 467 207 0 0 chr11 280236 280323 -148503149 - MLT1B LTR MaLR -15 375 289 866 217 0 17 chr11 280323 280503 -148502969 - AluSx SINE Alu -133 179 3 1347 256 37 53 chr11 280587 281207 -148502265 - L1MC1 LINE L1 -2508 3638 3029 617 225 0 0 chr11 281214 281334 -148502138 - AluJb SINE Alu -8 304 185 2185 104 24 0 chr11 281875 282163 -148501309 - AluSx SINE Alu -16 296 2 243 292 44 9 chr11 282784 282897 -148500575 - L1M4 LINE L1 -2587 3559 3443 1014 121 0 7 chr11 282944 283084 -148500388 - AluSg/x SINE Alu -10 302 164 414 84 0 92 chr11 283288 283430 -148500042 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 1829 160 43 62 chr11 283787 284205 -148499267 - MLT2D LTR ERVL 0 414 5 207 230 150 40 chr11 284617 284717 -148498755 + L2 LINE L2 3161 3271 -1 460 117 0 0 chr11 285633 285693 -148497779 + Alu SINE Alu 234 293 -19 1045 208 0 0 chr11 285711 285894 -148497578 - AluJb SINE Alu -5 307 125 1899 116 3 47 chr11 285921 286222 -148497250 - AluSx SINE Alu -24 288 1 327 303 101 8 chr11 286268 286387 -148497085 - L1M4 LINE L1 -3352 2794 2665 2152 116 0 13 chr11 287730 288032 -148495440 + AluSx SINE Alu 1 298 -14 1971 250 82 27 chr11 288105 288746 -148494726 - L1ME1 LINE L1 -141 6094 5413 315 0 0 0 chr11 288746 288781 -148494691 + (TA)n Simple_repeat Simple_repeat 1 35 0 1971 250 82 27 chr11 288781 288807 -148494665 - L1ME1 LINE L1 -822 5413 5390 2103 120 3 42 chr11 288807 289116 -148494356 - AluSx SINE Alu -15 297 1 3832 136 3 8 chr11 289132 289742 -148493730 + L1PB3 LINE L1 5546 6152 -2 22 35 0 0 chr11 289742 289771 -148493701 + AT_rich Low_complexity Low_complexity 1 29 0 308 211 13 40 chr11 289771 289817 -148493655 - L1ME1 LINE L1 -2449 5405 5360 1367 240 3 6 chr11 289817 290130 -148493342 - AluSx SINE Alu 0 312 1 308 211 13 40 chr11 290130 290159 -148493313 - L1ME1 LINE L1 -2494 5360 5332 21 0 0 0 chr11 290159 290180 -148493292 + AT_rich Low_complexity Low_complexity 1 21 0 1328 218 12 65 chr11 290308 290614 -148492858 - L1ME1 LINE L1 -2008 4207 3927 2505 65 0 34 chr11 290614 290936 -148492536 - AluY SINE Alu 0 311 1 1328 218 12 65 chr11 290936 291041 -148492431 - L1ME1 LINE L1 -2288 3927 3818 786 270 40 30 chr11 291043 291339 -148492133 - L1M4 LINE L1 -761 5385 5087 999 204 0 0 chr11 291344 291511 -148491961 + FRAM SINE Alu 1 163 -13 1416 217 72 21 chr11 291512 291940 -148491532 - L1M4 LINE L1 -1059 5087 4638 692 208 8 0 chr11 291942 292067 -148491405 + FLAM_C SINE Alu 2 127 -16 892 267 24 3 chr11 292094 292390 -148491082 - L1M4 LINE L1 -1503 4643 4342 2406 114 0 0 chr11 292396 292703 -148490769 - AluSx SINE Alu -5 307 1 1657 230 41 47 chr11 292710 293201 -148490271 - L1ME1 LINE L1 -4008 2388 1899 2247 117 0 0 chr11 293201 293499 -148489973 + AluSx SINE Alu 1 298 -14 1657 230 41 47 chr11 293499 293563 -148489909 - L1ME1 LINE L1 -4497 1899 1836 195 42 0 0 chr11 293970 293994 -148489478 + (A)n Simple_repeat Simple_repeat 1 24 0 1216 263 51 57 chr11 293996 294643 -148488829 - L1ME1 LINE L1 -4599 1797 1155 2503 88 3 0 chr11 294644 294952 -148488520 - AluY SINE Alu 0 311 3 846 105 0 0 chr11 294952 295057 -148488415 - AluSg/x SINE Alu -14 296 192 320 89 13 0 chr11 295158 295209 -148488263 - Alu SINE Alu -259 41 1 2073 223 58 81 chr11 295233 296014 -148487458 - L1ME1 LINE L1 -5300 1096 334 1720 105 42 0 chr11 296019 296258 -148487214 - AluSx SINE Alu -12 300 52 2045 78 0 0 chr11 296451 296706 -148486766 - AluY SINE Alu 0 311 57 183 42 0 0 chr11 296981 297005 -148486467 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2017 98 49 0 chr11 297005 297271 -148486201 - AluSx SINE Alu -33 279 1 707 301 105 18 chr11 297952 298145 -148485327 - L2 LINE L2 -756 2558 2383 2306 80 6 16 chr11 298145 298456 -148485016 - AluSx SINE Alu 0 312 5 707 301 105 18 chr11 298456 298654 -148484818 - L2 LINE L2 -931 2383 2133 298 263 50 0 chr11 298838 298937 -148484535 + MIR SINE MIR 2 105 -157 2275 106 0 13 chr11 298982 299283 -148484189 - AluSx SINE Alu -15 297 1 404 301 76 42 chr11 299356 299618 -148483854 + L1M4 LINE L1 5063 5333 -813 373 300 28 22 chr11 299751 300095 -148483377 - L1M3 LINE L1 -728 5452 5106 403 256 23 16 chr11 300154 300283 -148483189 + L1ME3A LINE L1 6011 6140 -30 855 240 413 7 chr11 300740 301178 -148482294 + L1MC4 LINE L1 6469 7084 -958 964 216 90 50 chr11 301276 301424 -148482048 + L1MC4 LINE L1 7322 7463 -579 1292 194 107 38 chr11 301424 301769 -148481703 + MLT1A2 LTR MaLR 2 370 -4 964 216 90 50 chr11 301769 301898 -148481574 + L1MC4 LINE L1 7463 7610 -432 341 248 67 89 chr11 301916 302186 -148481286 - L1M4 LINE L1 -926 5289 5026 342 321 17 46 chr11 302615 302855 -148480617 - L1M4 LINE L1 -1193 5022 4789 1703 271 79 61 chr11 302856 303377 -148480095 - L1MEc LINE L1 -2734 3481 2971 2510 47 0 14 chr11 303377 303674 -148479798 - AluY SINE Alu -17 294 2 1703 271 79 61 chr11 303674 303697 -148479775 - L1MEc LINE L1 -3244 2971 2950 2061 108 34 14 chr11 303697 303993 -148479479 - AluSx SINE Alu -10 302 1 1703 271 79 61 chr11 303993 304595 -148478877 - L1MEc LINE L1 -3265 2950 2360 1608 98 0 0 chr11 304595 304798 -148478674 - AluSg/x SINE Alu -24 286 84 1862 151 0 30 chr11 304800 305104 -148478368 - AluJo SINE Alu -17 295 1 1703 271 79 61 chr11 305104 305300 -148478172 - L1MEc LINE L1 -3855 2360 2169 2008 119 7 4 chr11 305300 305598 -148477874 - AluSg SINE Alu 0 299 1 1703 271 79 61 chr11 305598 306195 -148477277 - L1MEc LINE L1 -4046 2169 1512 233 278 9 56 chr11 306424 306532 -148476940 - MER103 DNA DNA -45 121 19 418 292 96 41 chr11 306678 306897 -148476575 - L1MEc LINE L1 -5162 1043 813 368 36 0 18 chr11 307437 307493 -148475979 - AluY SINE Alu 0 301 247 226 184 41 0 chr11 307471 307520 -148475952 - Alu SINE Alu -250 51 1 * 850 101 0 0 chr11 307546 307655 -148475817 + AluSq/x SINE Alu 3 111 -201 1934 64 4 0 chr11 307655 307889 -148475583 - AluY SINE Alu -76 235 1 1430 112 5 0 chr11 308360 308548 -148474924 + AluSx SINE Alu 1 189 -123 636 181 206 0 chr11 308649 308804 -148474668 - MER34 LTR ERV1 -316 226 40 2091 89 62 3 chr11 308815 309107 -148474365 - AluSc SINE Alu 0 309 1 529 238 177 40 chr11 309188 309663 -148473809 - L1M4 LINE L1 -2848 3298 2759 585 281 14 36 chr11 309664 309764 -148473708 - L1M4 LINE L1 -2479 3667 3566 2234 124 0 6 chr11 309764 310079 -148473393 - AluSq SINE Alu 0 313 1 585 281 14 36 chr11 310079 310199 -148473273 - L1M4 LINE L1 -2580 3566 3452 390 316 109 41 chr11 310496 310889 -148472583 - L1MEc LINE L1 -5611 594 175 457 297 44 27 chr11 311025 311298 -148472174 + L1ME1 LINE L1 2719 3001 -3145 1493 226 30 6 chr11 311298 311634 -148471838 + MER2 DNA MER2_type 1 344 0 457 297 44 27 chr11 311634 311727 -148471745 + L1ME1 LINE L1 3001 3091 -3055 189 139 0 0 chr11 313175 313218 -148470254 + (T)n Simple_repeat Simple_repeat 1 43 0 2393 80 0 22 chr11 313609 313921 -148469551 - AluY SINE Alu -6 305 1 669 317 24 66 chr11 314098 314521 -148468951 + L1ME1 LINE L1 3056 3460 -2686 301 338 60 0 chr11 314649 314782 -148468690 + L1ME1 LINE L1 3623 3763 -2383 1915 53 4 15 chr11 315011 315277 -148468195 + L1PA4 LINE L1 5889 6151 -4 2343 101 7 7 chr11 315392 315700 -148467772 - AluSq SINE Alu -5 308 1 454 250 50 55 chr11 315701 315921 -148467551 - L1M4 LINE L1 -2059 4087 3869 735 223 52 24 chr11 316212 316423 -148467049 + L1ME1 LINE L1 4915 5131 -1015 2380 91 3 0 chr11 316428 316725 -148466747 + AluSx SINE Alu 1 298 -14 889 248 40 0 chr11 316730 316952 -148466520 + L1ME1 LINE L1 5601 5831 -335 1762 196 49 61 chr11 316952 317463 -148466009 + MLT1D LTR MaLR 1 505 0 575 253 17 36 chr11 317505 317722 -148465750 + L1ME1 LINE L1 5820 6024 -154 985 208 81 0 chr11 317850 318071 -148465401 - Tigger3(Golem) DNA MER2_type -1 3028 2790 375 311 0 0 chr11 318084 318187 -148465285 - Tigger3(Golem) DNA MER2_type -2894 135 33 1971 167 0 16 chr11 318209 318526 -148464946 + AluJo SINE Alu 1 312 0 1861 160 82 3 chr11 319222 319578 -148463894 + MLT1B LTR MaLR 1 384 -6 1439 242 111 15 chr11 320715 321174 -148462298 - MLT1D LTR MaLR 0 505 3 270 226 0 59 chr11 323840 323942 -148459530 + L2 LINE L2 3139 3234 -38 187 237 68 0 chr11 324748 324807 -148458665 - MIR SINE MIR -92 170 108 294 247 67 11 chr11 324873 324962 -148458510 - MIR SINE MIR -92 170 77 207 272 19 76 chr11 326066 326224 -148457248 + (CACCC)n Simple_repeat Simple_repeat 1 149 0 222 287 52 9 chr11 326455 326570 -148456902 + (CAGCC)n Simple_repeat Simple_repeat 1 120 0 1598 234 58 11 chr11 326877 327326 -148456146 + MLT1D LTR MaLR 2 471 -34 321 68 0 0 chr11 328137 328181 -148455291 + (CA)n Simple_repeat Simple_repeat 2 45 0 4948 172 31 14 chr11 328183 328567 -148454905 - L1MC2 LINE L1 -114 6230 5854 1732 170 7 3 chr11 328567 328867 -148454605 - AluJb SINE Alu -11 301 1 4948 172 31 14 chr11 328867 329509 -148453963 - L1MC2 LINE L1 -490 5854 5188 232 158 0 0 chr11 329730 329768 -148453704 - L1MC2 LINE L1 -1355 4791 4754 1097 245 129 52 chr11 329779 330022 -148453450 + L2 LINE L2 1824 2047 -1267 2181 119 20 0 chr11 330022 330324 -148453148 - AluSx SINE Alu -4 308 1 1097 245 129 52 chr11 330324 330709 -148452763 + L2 LINE L2 2047 2500 -814 4682 90 21 33 chr11 330709 330880 -148452592 - LTR8 LTR ERV1 0 691 520 351 0 0 0 chr11 330880 330919 -148452553 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 676 36 0 0 chr11 330920 331003 -148452469 - L1PA5 LINE L1 -12 6142 6060 4682 90 21 33 chr11 331003 331527 -148451945 - LTR8 LTR ERV1 -170 521 2 265 246 14 0 chr11 331531 331600 -148451872 + L2 LINE L2 2497 2566 -748 2141 113 3 0 chr11 331740 332031 -148451441 + AluSq SINE Alu 2 293 -20 193 346 13 13 chr11 332235 332313 -148451159 + L2 LINE L2 3234 3311 -2 295 246 0 0 chr11 333157 333222 -148450250 - L2 LINE L2 -3 3310 3246 220 292 0 0 chr11 334117 334165 -148449307 + L2 LINE L2 3003 3050 -263 844 87 46 9 chr11 335130 335350 -148448122 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 922 103 50 0 chr11 335368 335826 -148447646 + (TCCA)n Simple_repeat Simple_repeat 1 480 0 202 231 0 0 chr11 336298 336337 -148447135 + T-rich Low_complexity Low_complexity 2 40 0 1239 227 94 6 chr11 336592 336922 -148446550 - MLT1A1 LTR MaLR -6 359 1 1433 286 91 20 chr11 337354 337517 -148445955 + L2 LINE L2 2036 2186 -1128 1819 140 81 69 chr11 337517 337939 -148445533 - MSTA LTR MaLR -1 427 1 1433 286 91 20 chr11 337939 338352 -148445120 + L2 LINE L2 2186 2667 -647 2453 107 0 0 chr11 338352 338660 -148444812 - AluSg SINE Alu -2 308 1 1433 286 91 20 chr11 338660 338739 -148444733 + L2 LINE L2 2667 2739 -575 642 282 78 103 chr11 338784 339281 -148444191 + L2 LINE L2 2827 3311 -2 520 274 73 6 chr11 339559 339596 -148443876 + L2 LINE L2 2422 2455 -859 2331 72 23 7 chr11 339596 339901 -148443571 - AluSg SINE Alu 0 310 1 520 274 73 6 chr11 339901 340027 -148443445 + L2 LINE L2 2455 2596 -718 398 215 0 0 chr11 340246 340325 -148443147 + Tigger5 DNA MER2_type 1 79 -2244 314 274 0 0 chr11 340380 340453 -148443019 + Tigger5 DNA MER2_type 2248 2320 -3 768 291 34 17 chr11 341057 341291 -148442181 - MIR SINE MIR -24 238 1 457 337 65 42 chr11 341314 341623 -148441849 + L1M4 LINE L1 4254 4569 -1577 658 107 76 0 chr11 341822 342158 -148441314 + (CACTC)n Simple_repeat Simple_repeat 1 361 0 254 323 10 0 chr11 342244 342343 -148441129 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 601 271 60 35 chr11 342872 343156 -148440316 - L1MC4 LINE L1 -1 8041 7751 309 320 58 41 chr11 344244 344416 -148439056 + MIR SINE MIR 80 254 -8 218 273 0 0 chr11 346216 346271 -148437201 + L2 LINE L2 3259 3313 0 980 162 0 0 chr11 346442 346596 -148436876 + AluJb SINE Alu 147 300 -12 513 188 12 6 chr11 346642 346807 -148436665 + (TG)n Simple_repeat Simple_repeat 1 166 0 242 221 0 44 chr11 346811 346879 -148436593 + (TATG)n Simple_repeat Simple_repeat 4 68 0 346 240 17 17 chr11 346902 347081 -148436391 + (TG)n Simple_repeat Simple_repeat 2 180 0 461 225 17 6 chr11 347121 347299 -148436173 + (TG)n Simple_repeat Simple_repeat 1 180 0 562 183 25 18 chr11 347317 347760 -148435712 + (TG)n Simple_repeat Simple_repeat 1 446 0 288 279 66 20 chr11 348316 348513 -148434959 + L1MEc LINE L1 1277 1482 -4914 728 142 15 0 chr11 348755 348889 -148434583 - MER4D LTR ERV1 -13 890 755 773 197 0 15 chr11 348894 349031 -148434441 - AluJo SINE Alu -177 135 1 949 146 32 5 chr11 349031 349216 -148434256 - MER4D LTR ERV1 -133 739 550 989 51 0 0 chr11 349223 349340 -148434132 + AluSx SINE Alu 16 132 -180 383 277 0 43 chr11 349351 349445 -148434027 + L1MC4 LINE L1 6614 6703 -1339 * 386 240 0 62 chr11 349385 349481 -148433991 - L1MC4 LINE L1 -1339 6703 6614 * 423 251 4 24 chr11 349460 349586 -148433886 - L1MCa LINE L1 -1339 6983 1995 239 255 0 0 chr11 349590 349637 -148433835 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1394 93 0 0 chr11 349637 349819 -148433653 + AluSx SINE Alu 123 304 -6 920 170 6 11 chr11 349846 350028 -148433444 - MER4D LTR ERV1 -463 409 229 428 221 71 0 chr11 350073 350213 -148433259 - MER4D LTR ERV1 -753 150 1 21 0 0 0 chr11 350495 350516 -148432956 + GC_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr11 350536 350591 -148432881 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 312 296 29 48 chr11 352835 353041 -148430431 - L2 LINE L2 -822 2492 2291 301 189 0 95 chr11 359801 359970 -148423502 + CT-rich Low_complexity Low_complexity 3 155 0 312 163 0 56 chr11 359997 360157 -148423315 + (TCCA)n Simple_repeat Simple_repeat 2 152 0 234 0 0 0 chr11 360580 360606 -148422866 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chr11 365378 365421 -148418051 + GC_rich Low_complexity Low_complexity 1 43 0 399 333 6 6 chr11 368073 368238 -148415234 + (TG)n Simple_repeat Simple_repeat 2 166 0 276 275 18 0 chr11 368257 368428 -148415044 + (TG)n Simple_repeat Simple_repeat 1 174 0 374 326 17 11 chr11 368509 368687 -148414785 + (TG)n Simple_repeat Simple_repeat 2 180 0 268 278 17 6 chr11 368719 369084 -148414388 + (TG)n Simple_repeat Simple_repeat 1 369 0 224 280 222 0 chr11 369687 369777 -148413695 + MIR SINE MIR 29 137 -71 183 129 0 0 chr11 369888 369919 -148413553 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 692 146 0 0 chr11 370609 370719 -148412753 + AluSg/x SINE Alu 200 309 -1 334 162 34 179 chr11 370719 370836 -148412636 + L1MD1 LINE L1 3185 3284 -2862 803 75 37 0 chr11 370845 370952 -148412520 - AluSq/x SINE Alu -201 111 1 1055 269 0 7 chr11 370954 371236 -148412236 + L1MC1 LINE L1 6039 6318 -15 1159 247 36 50 chr11 371257 371531 -148411941 + L1MD1 LINE L1 4397 4662 -1484 4829 35 0 9 chr11 371531 372102 -148411370 + L1PA5 LINE L1 5589 6154 0 1159 247 36 50 chr11 372102 372329 -148411143 + L1MD1 LINE L1 4662 4891 -1255 764 287 81 12 chr11 372335 372656 -148410816 - MLT1A1 LTR MaLR -17 348 6 515 246 16 26 chr11 372662 372853 -148410619 + L1MD1 LINE L1 4889 5077 -1069 778 227 68 0 chr11 373203 373410 -148410062 + L1M4b LINE L1 94 314 -6545 1557 197 34 151 chr11 373410 374081 -148409391 - LTR8A LTR ERV1 0 727 135 3059 188 85 26 chr11 374087 374955 -148408517 + LTR28 LTR ERV1 1 1020 0 392 232 0 42 chr11 374955 375049 -148408423 - LTR8 LTR ERV1 -572 119 30 2250 265 53 19 chr11 375063 375817 -148407655 + L1M4b LINE L1 311 1090 -5769 1164 220 39 16 chr11 375928 376237 -148407235 + L1MD1 LINE L1 5672 5987 -255 942 189 31 15 chr11 376244 376440 -148407032 + L1MD1 LINE L1 6044 6242 0 1309 303 69 9 chr11 376446 377023 -148406449 + L1MEc LINE L1 31 642 -5754 1183 22 0 0 chr11 377079 377213 -148406259 + AluY SINE Alu 1 134 -177 2494 58 0 0 chr11 377213 377521 -148405951 + AluY SINE Alu 1 308 -3 1082 247 164 0 chr11 377524 377897 -148405575 + L1MEc LINE L1 2673 3106 -3109 1017 199 11 5 chr11 377904 378090 -148405382 + AluJo SINE Alu 1 187 -125 973 305 74 41 chr11 378250 378316 -148405156 - L1MCc LINE L1 -4889 1534 1472 2216 117 0 0 chr11 378316 378624 -148404848 - AluSg SINE Alu -2 308 1 973 305 74 41 chr11 378624 379001 -148404471 - L1MCc LINE L1 -4951 1472 1067 2133 113 0 7 chr11 379001 379302 -148404170 - AluSg SINE Alu -11 299 1 973 305 74 41 chr11 379302 379398 -148404074 - L1MCc LINE L1 -5356 1067 976 273 214 0 18 chr11 379399 379455 -148404017 - L2 LINE L2 -1 3312 3258 21 0 0 0 chr11 379911 379932 -148403540 + AT_rich Low_complexity Low_complexity 1 21 0 2055 135 0 3 chr11 379945 380248 -148403224 + AluSq SINE Alu 1 302 -11 251 282 96 5 chr11 380261 380449 -148403023 + L1M4 LINE L1 4490 4694 -1452 314 340 105 0 chr11 380466 380628 -148402844 + L1M4 LINE L1 4640 4818 -1328 403 356 104 13 chr11 380913 381143 -148402329 + L1M4 LINE L1 5091 5341 -805 287 96 0 58 chr11 381503 381555 -148401917 - AluSp SINE Alu -134 169 121 845 145 8 0 chr11 381579 381703 -148401769 - AluSq/x SINE Alu -187 125 1 340 336 109 51 chr11 381823 381840 -148401632 - L1M4 LINE L1 -1949 4197 4182 2127 129 3 0 chr11 381840 382150 -148401322 - AluSx SINE Alu -1 311 1 340 336 109 51 chr11 382150 382444 -148401028 - L1M4 LINE L1 -1964 4182 3868 254 306 19 28 chr11 384223 384331 -148399141 - LTR16C LTR ERVL 0 491 385 510 226 30 0 chr11 384696 384829 -148398643 + GA-rich Low_complexity Low_complexity 2 138 0 504 168 0 0 chr11 384831 384932 -148398540 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 1202 183 9 5 chr11 384944 385168 -148398304 - LTR55 LTR ERV -322 226 2 253 250 37 56 chr11 386989 387097 -148396375 + MLT1A1 LTR MaLR 51 156 -209 547 281 0 0 chr11 387109 387244 -148396228 - MLT-int LTR MaLR -1315 420 286 778 100 9 0 chr11 387245 387355 -148396117 + AluJb SINE Alu 1 111 -201 982 163 6 0 chr11 387440 387600 -148395872 + AluJb SINE Alu 135 295 -17 1030 202 59 29 chr11 387600 387872 -148395600 - MLT-int LTR MaLR -1440 295 16 617 234 24 0 chr11 387929 388096 -148395376 + MLT1A1 LTR MaLR 186 356 -9 1157 206 45 86 chr11 388611 388970 -148394502 + MLT2D LTR ERVL 21 364 -50 322 358 86 55 chr11 388999 389256 -148394216 - L1MC4 LINE L1 -1339 6703 6439 * 327 300 25 69 chr11 389099 389259 -148394213 + L1MCa LINE L1 1915 2067 -4359 25 23 0 23 chr11 389264 389283 -148394189 + AT_rich Low_complexity Low_complexity 1 19 -23 2091 117 3 0 chr11 389283 389573 -148393899 - AluSx SINE Alu -21 291 1 25 23 0 23 chr11 389573 389596 -148393876 + AT_rich Low_complexity Low_complexity 19 42 0 2225 56 40 10 chr11 391048 391403 -148392069 - AluY SINE Alu 0 364 1 207 0 0 0 chr11 391588 391611 -148391861 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 373 187 107 0 chr11 391751 391901 -148391571 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 290 133 107 0 chr11 391913 392063 -148391409 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 229 144 106 0 chr11 392111 392243 -148391229 + (CACAC)n Simple_repeat Simple_repeat 5 150 0 247 151 107 0 chr11 392255 392414 -148391058 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 338 186 16 81 chr11 392442 392566 -148390906 + MLT2D LTR ERVL 293 408 -6 479 143 0 20 chr11 393640 393738 -148389734 + LTR52 LTR ERVL 1 96 -325 381 248 48 0 chr11 393864 393989 -148389483 + LTR52 LTR ERVL 288 418 -3 2124 117 0 0 chr11 393997 394325 -148389147 - AluSx SINE Alu 0 312 1 21 57 0 0 chr11 396074 396109 -148387363 + GC_rich Low_complexity Low_complexity 1 35 0 572 167 0 16 chr11 398325 398451 -148385021 + CT-rich Low_complexity Low_complexity 4 127 0 1335 293 47 11 chr11 398469 398911 -148384561 - L1MB3 LINE L1 -28 6155 5688 1474 221 168 20 chr11 398911 399309 -148384163 - MSTB2 LTR MaLR 0 457 1 1335 293 47 11 chr11 399309 399415 -148384057 - L1MB3 LINE L1 -495 5688 5587 295 329 16 36 chr11 399448 399700 -148383772 + MLT1J LTR MaLR 232 478 -33 181 291 87 19 chr11 402886 402989 -148380483 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr11 404484 404510 -148378962 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 404670 404692 -148378780 + GC_rich Low_complexity Low_complexity 1 22 0 256 348 39 0 chr11 405716 405855 -148377617 - MIR SINE MIR -60 148 43 286 293 69 0 chr11 406132 406248 -148377224 + MER45A DNA AcHobo 55 178 0 269 55 16 142 chr11 407018 407201 -148376271 + (TCCTG)n Simple_repeat Simple_repeat 5 164 0 201 75 0 149 chr11 407256 407457 -148376015 + (TCCTG)n Simple_repeat Simple_repeat 1 171 0 284 85 0 144 chr11 407493 407611 -148375861 + (TCCTG)n Simple_repeat Simple_repeat 1 101 0 1177 227 70 23 chr11 407829 408217 -148375255 + MLT1C LTR MaLR 61 466 -1 210 37 0 0 chr11 409451 409478 -148373994 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3374 98 31 2 chr11 409478 409955 -148373517 - L1PA13 LINE L1 -13 6150 5660 1226 169 0 49 chr11 409955 410144 -148373328 + L1P LINE L1 3758 3932 -2214 2179 93 0 35 chr11 410144 410338 -148373134 - AluSx SINE Alu -11 301 121 2435 66 0 10 chr11 410338 410641 -148372831 - AluY SINE Alu -10 301 2 2179 93 0 35 chr11 410641 410758 -148372714 - AluSx SINE Alu -191 121 1 1226 169 0 49 chr11 410758 410834 -148372638 + L1P LINE L1 3932 4010 -2136 201 353 88 24 chr11 411005 411175 -148372297 - MIR SINE MIR -68 194 14 784 282 60 19 chr11 412071 412387 -148371085 - L1ME3A LINE L1 -6 6164 5836 347 328 33 61 chr11 412454 412634 -148370838 + L1MEd LINE L1 649 823 -5707 629 323 37 21 chr11 412650 413025 -148370447 + L1MEd LINE L1 780 1160 -5370 347 306 153 0 chr11 413179 413323 -148370149 + L1MEd LINE L1 2077 2242 -4298 981 278 65 10 chr11 413411 413796 -148369676 + L1MEd LINE L1 3563 3968 -2572 332 239 0 0 chr11 413847 413914 -148369558 + L1M4 LINE L1 3130 3196 -2950 8097 68 12 4 chr11 415457 416456 -148367016 - LTR13 LTR ERVK 0 1007 1 232 105 0 58 chr11 417773 417859 -148365613 + (GGGTG)n Simple_repeat Simple_repeat 5 85 0 380 156 0 39 chr11 417892 418071 -148365401 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 301 304 65 0 chr11 418218 418356 -148365116 + MER90 LTR ERV1 103 249 -326 227 264 214 0 chr11 418401 418583 -148364889 + MER90 LTR ERV1 344 564 -11 369 313 23 23 chr11 419620 419751 -148363721 - L2 LINE L2 -3 3310 3180 1901 133 59 0 chr11 420738 421024 -148362448 - AluSq SINE Alu -10 303 1 1802 200 99 16 chr11 421274 421310 -148362162 - MER45R DNA AcHobo -39 1542 1510 1980 157 0 0 chr11 421310 421615 -148361857 + AluSg SINE Alu 1 305 -5 1802 200 99 16 chr11 421615 422142 -148361330 - MER45R DNA AcHobo -71 1510 932 1976 223 80 62 chr11 422142 422271 -148361201 - L1MC3 LINE L1 -21 7764 7639 1986 116 4 0 chr11 422271 422548 -148360924 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 422554 422577 -148360895 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1976 223 80 62 chr11 422577 422588 -148360884 - L1MC3 LINE L1 -150 7635 7626 2177 127 0 0 chr11 422588 422896 -148360576 + AluSx SINE Alu 1 308 -4 1976 223 80 62 chr11 422896 423459 -148360013 - L1MC3 LINE L1 -159 7626 7040 808 153 0 0 chr11 423459 423583 -148359889 - AluSg/x SINE Alu 0 310 187 947 175 24 101 chr11 423583 423921 -148359551 - L1MC3 LINE L1 -742 7043 6732 2824 148 18 4 chr11 423964 424478 -148358994 + LTR43 LTR ERV1 1 521 -81 723 119 90 0 chr11 424468 424602 -148358870 + MER51B LTR ERV1 229 374 -3 * 947 217 83 0 chr11 425235 425475 -148357997 - MLT1C LTR MaLR 0 467 208 2619 153 12 12 chr11 425475 425892 -148357580 + L1PA15 LINE L1 5744 6160 -5 244 204 0 0 chr11 428255 428304 -148355168 - MER53 DNA DNA 0 189 141 24 32 0 0 chr11 429463 429494 -148353978 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chr11 430062 430097 -148353375 + (TC)n Simple_repeat Simple_repeat 1 35 0 423 239 193 6 chr11 430097 430273 -148353199 + MLT1F LTR MaLR 170 378 -164 2073 142 0 3 chr11 430329 430640 -148352832 + AluJo SINE Alu 1 310 -2 245 392 0 0 chr11 430757 430877 -148352595 + L1M4 LINE L1 3797 3916 -2230 383 323 63 67 chr11 431137 431360 -148352112 + L1MC5 LINE L1 2176 2397 -4029 1673 151 33 27 chr11 431463 431800 -148351672 - MER1B DNA MER1_type 0 339 1 642 371 80 42 chr11 431988 432602 -148350870 - HAL1b LINE L1 -656 692 56 2103 129 0 3 chr11 432750 433061 -148350411 + AluSx SINE Alu 1 310 -2 2554 42 0 10 chr11 433772 434085 -148349387 - AluY SINE Alu -1 310 1 2452 70 0 0 chr11 434296 434596 -148348876 - AluY SINE Alu -11 300 1 225 197 128 0 chr11 435339 435456 -148348016 + (CTGGGG)n Simple_repeat Simple_repeat 5 136 0 1786 58 0 22 chr11 436406 436629 -148346843 - AluY SINE Alu -9 302 85 714 210 98 28 chr11 437039 437349 -148346123 + L1MC5 LINE L1 3176 7483 -758 642 279 19 20 chr11 437474 437794 -148345678 + MLT1I LTR MaLR 53 405 -4 2485 77 0 22 chr11 438173 438485 -148344987 - AluY SINE Alu -6 305 1 1474 81 0 41 chr11 439513 439710 -148343762 + AluY SINE Alu 106 294 -17 1737 177 0 4 chr11 439726 440024 -148343448 + AluJo SINE Alu 13 309 0 844 126 0 63 chr11 440057 440200 -148343272 - FLAM_A SINE Alu -1 141 8 390 235 71 10 chr11 440373 440471 -148343001 + MLT2B1 LTR ERVL 383 486 -34 354 188 0 0 chr11 440504 440605 -148342867 + (TATG)n Simple_repeat Simple_repeat 2 102 0 675 174 0 0 chr11 440633 440811 -148342661 + (TATG)n Simple_repeat Simple_repeat 3 180 0 216 0 0 0 chr11 440812 440836 -148342636 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 766 257 200 57 chr11 440865 441340 -148342132 + L2 LINE L2 2038 2580 -734 3236 197 76 54 chr11 441427 442431 -148341041 - L1MD1 LINE L1 0 6242 5221 1658 205 20 0 chr11 442449 442752 -148340720 - AluJb SINE Alu 0 312 4 349 177 0 0 chr11 442901 442963 -148340509 + MLT1I LTR MaLR 347 408 -1 314 162 0 29 chr11 443037 443081 -148340391 - MLT2B1 LTR ERVL 0 520 477 182 88 0 29 chr11 443081 443115 -148340357 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 314 162 0 29 chr11 443115 443138 -148340334 - MLT2B1 LTR ERVL -43 477 455 702 148 17 0 chr11 443149 443545 -148339927 + (TAGA)n Simple_repeat Simple_repeat 1 402 0 1706 189 126 2 chr11 443549 443977 -148339495 - MLT2B1 LTR ERVL -39 481 1 1014 276 107 33 chr11 444404 444679 -148338793 + L1ME2 LINE L1 4607 4860 -1286 216 0 0 0 chr11 444679 444703 -148338769 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2045 117 4 0 chr11 444708 444989 -148338483 - AluSx SINE Alu -30 282 1 1014 276 107 33 chr11 444989 445305 -148338167 + L1ME2 LINE L1 4863 5248 -898 256 174 14 14 chr11 445305 445374 -148338098 + (TA)n Simple_repeat Simple_repeat 2 70 0 1146 277 55 23 chr11 445398 445929 -148337543 + L1ME2 LINE L1 5254 5801 -363 1992 172 86 21 chr11 445945 446376 -148337096 + LTR2B LTR ERV1 32 490 0 1220 104 21 16 chr11 446394 446587 -148336885 + AluJb SINE Alu 117 310 -2 425 258 172 18 chr11 446621 446842 -148336630 + L1ME2 LINE L1 5873 6127 -37 670 109 0 0 chr11 446842 446943 -148336529 + FRAM SINE Alu 66 166 -10 2155 106 18 0 chr11 446949 447232 -148336240 + AluSx SINE Alu 3 290 -22 25 40 0 20 chr11 447260 447280 -148336192 + AT_rich Low_complexity Low_complexity 1 20 -29 2219 115 0 7 chr11 447280 447575 -148335897 + AluSq SINE Alu 1 293 -20 25 40 0 20 chr11 447575 447604 -148335868 + AT_rich Low_complexity Low_complexity 20 49 0 205 186 0 0 chr11 447951 447994 -148335478 + T-rich Low_complexity Low_complexity 2 44 0 202 361 0 0 chr11 448919 449088 -148334384 + (CTG)n Simple_repeat Simple_repeat 3 171 0 1238 125 0 0 chr11 449818 449986 -148333486 - AluSg SINE Alu -142 168 1 2657 58 0 0 chr11 450290 450601 -148332871 + AluY SINE Alu 1 311 0 2304 99 0 10 chr11 450944 451257 -148332215 + AluY SINE Alu 1 310 -1 276 186 12 23 chr11 452285 452371 -148331101 + GA-rich Low_complexity Low_complexity 2 86 0 235 333 14 0 chr11 452569 452641 -148330831 - LTR40c LTR ERVL 0 465 393 334 270 107 6 chr11 454653 454812 -148328660 + L1MD2 LINE L1 4597 4771 -1375 765 154 8 15 chr11 454824 454954 -148328518 + FLAM_C SINE Alu 5 133 0 22 0 0 0 chr11 454954 454976 -148328496 + AT_rich Low_complexity Low_complexity 1 22 0 2314 113 3 0 chr11 455193 455504 -148327968 + AluSx SINE Alu 1 312 0 1119 144 0 28 chr11 455504 455684 -148327788 + AluSg/x SINE Alu 132 306 -4 2283 268 83 5 chr11 455686 456903 -148326569 + L1MD2 LINE L1 4982 6349 -10 233 287 87 9 chr11 456926 457041 -148326431 + L1MC4a LINE L1 5895 6018 -1790 23 33 0 0 chr11 457090 457120 -148326352 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 457791 457826 -148325646 + GC_rich Low_complexity Low_complexity 1 35 0 409 218 26 13 chr11 460254 460410 -148323062 + CT-rich Low_complexity Low_complexity 2 159 0 354 305 142 4 chr11 460519 460758 -148322714 - L1M4 LINE L1 -1559 4587 4316 * 2790 236 61 37 chr11 460753 461622 -148321850 - L1MB8 LINE L1 -1 6177 5288 2113 301 104 4 chr11 461621 461761 -148321711 - L1M4 LINE L1 -1818 4328 4203 * 189 0 0 0 chr11 461761 461782 -148321690 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2113 301 104 4 chr11 461782 462660 -148320812 - L1M4 LINE L1 -1943 4203 3208 189 0 0 0 chr11 463005 463026 -148320446 + (CA)n Simple_repeat Simple_repeat 2 22 0 301 212 158 68 chr11 463417 463563 -148319909 + L1M2 LINE L1 2744 2902 -3947 347 301 68 37 chr11 463699 463862 -148319610 + L1M2 LINE L1 3462 3629 -3219 1742 257 61 75 chr11 463960 465091 -148318381 - L1M4 LINE L1 -800 5346 4232 405 346 25 18 chr11 465062 465345 -148318127 - L1MEc LINE L1 -5007 1389 1105 * 571 113 0 0 chr11 465435 465515 -148317957 - AluJ/FRAM SINE Alu -17 295 216 3987 252 32 7 chr11 465617 466758 -148316714 + L1M2 LINE L1 3924 5093 -1755 24 53 0 0 chr11 466891 466929 -148316543 + AT_rich Low_complexity Low_complexity 1 38 0 1596 156 81 0 chr11 466975 467282 -148316190 - MER44D DNA MER2_type -3 606 5 23 33 0 0 chr11 467283 467313 -148316159 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 467451 467479 -148315993 + AT_rich Low_complexity Low_complexity 1 28 0 2226 99 0 3 chr11 467724 468008 -148315464 + AluSc SINE Alu 1 283 -26 342 0 0 0 chr11 468016 468054 -148315418 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1774 141 24 24 chr11 468307 468480 -148314992 - L1MC/D LINE L1 -772 5587 5412 2738 204 55 67 chr11 468480 469207 -148314265 - MER72 LTR ERV1 0 722 5 1774 141 24 24 chr11 469207 469367 -148314105 - L1MC/D LINE L1 -946 5413 5254 1875 264 43 17 chr11 469819 470523 -148312949 + L1M4 LINE L1 2685 3406 -2740 2573 124 142 0 chr11 470626 471071 -148312401 + Tigger3(Golem) DNA MER2_type 2520 3027 -2 197 304 69 0 chr11 472045 472147 -148311325 + MIR SINE MIR 27 135 -127 2047 120 10 20 chr11 473098 473399 -148310073 - AluJb SINE Alu -14 298 1 2377 106 0 0 chr11 473716 474017 -148309455 - AluY SINE Alu -10 301 1 968 152 21 21 chr11 474594 474785 -148308687 + L1MB4 LINE L1 5984 6174 -6 612 230 0 24 chr11 474807 474933 -148308539 + FLAM_C SINE Alu 1 123 -10 2405 71 3 0 chr11 474942 475236 -148308236 + AluY SINE Alu 1 295 -16 21 36 0 0 chr11 476945 476973 -148306499 + AT_rich Low_complexity Low_complexity 1 28 0 2217 122 3 0 chr11 477007 477301 -148306171 - AluSx SINE Alu -15 297 3 1004 125 0 0 chr11 477302 477438 -148306034 - AluSq/x SINE Alu -176 136 1 2479 135 37 23 chr11 478316 478752 -148304720 + MER83 LTR ERV1 1 442 -6 307 296 99 0 chr11 478752 478894 -148304578 + L1MC/D LINE L1 5443 5598 -2210 1898 234 23 41 chr11 479569 479673 -148303799 - L1MA9 LINE L1 -37 6275 6171 180 0 0 0 chr11 479673 479693 -148303779 + (TC)n Simple_repeat Simple_repeat 2 21 0 1898 234 23 41 chr11 479693 480100 -148303372 - L1MA9 LINE L1 -141 6171 5773 292 217 0 0 chr11 480097 480157 -148303315 + L1MA9 LINE L1 5933 5992 -320 * 2509 70 0 3 chr11 480379 480691 -148302781 - AluY SINE Alu 0 311 1 454 220 46 0 chr11 480691 480800 -148302672 + MLT1A2 LTR MaLR 260 373 -1 369 0 0 0 chr11 481022 481063 -148302409 + (TG)n Simple_repeat Simple_repeat 1 41 0 2088 132 0 3 chr11 483296 483600 -148299872 + AluSx SINE Alu 7 309 -3 608 38 0 12 chr11 483603 483683 -148299789 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 310 194 74 19 chr11 483687 483795 -148299677 - MLT1C LTR MaLR -52 415 302 249 59 0 0 chr11 483821 483855 -148299617 - MLT1C LTR MaLR -327 140 107 549 333 102 36 chr11 483982 484436 -148299036 - L1M4 LINE L1 -3921 2733 2310 1981 157 3 6 chr11 484436 484748 -148298724 - AluJo SINE Alu -1 311 1 549 333 102 36 chr11 484748 484782 -148298690 - L1M4 LINE L1 -4344 2310 1203 945 166 0 13 chr11 485108 485265 -148298207 - FRAM SINE Alu -22 154 1 221 344 16 33 chr11 485766 485888 -148297584 - MIR3 SINE MIR -84 124 5 1797 154 71 6 chr11 488770 489121 -148294351 - MSTB LTR MaLR 0 426 53 3766 137 4 46 chr11 489121 489973 -148293499 + L1PA16 LINE L1 5372 6161 -2 404 248 6 31 chr11 489969 490130 -148293342 - L1M4 LINE L1 -864 5282 5126 * 348 307 0 0 chr11 491422 491572 -148291900 + (CA)n Simple_repeat Simple_repeat 2 151 0 21 89 0 0 chr11 493636 493692 -148289780 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 493798 493830 -148289642 + GC_rich Low_complexity Low_complexity 1 32 0 37 97 0 0 chr11 493876 493990 -148289482 + GC_rich Low_complexity Low_complexity 1 114 0 207 139 0 0 chr11 493990 494026 -148289446 + (CCG)n Simple_repeat Simple_repeat 3 38 0 27 96 0 0 chr11 494040 494123 -148289349 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr11 496764 496788 -148286684 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 245 323 114 0 chr11 497249 497390 -148286082 + MER5A DNA MER1_type 1 167 -22 193 279 136 61 chr11 497274 497421 -148286051 - MER5A DNA MER1_type -27 162 5 * 183 339 31 0 chr11 497471 497536 -148285936 - MIR SINE MIR -124 84 18 226 344 98 8 chr11 498138 498260 -148285212 - L2 LINE L2 -223 3049 2917 827 193 13 13 chr11 498913 499063 -148284409 + AluJb SINE Alu 140 289 -23 309 348 11 0 chr11 499066 499155 -148284317 - L1MC4 LINE L1 -1339 6703 6614 * 348 293 38 0 chr11 499098 499204 -148284268 + L1MC4 LINE L1 1959 2068 -4358 * 432 223 10 26 chr11 499183 499286 -148284186 + L1MC4 LINE L1 1995 6983 -1339 302 241 17 0 chr11 499246 499304 -148284168 - L1MCa LINE L1 -4362 2064 2006 * 2123 113 0 0 chr11 499308 499591 -148283881 - AluSx SINE Alu -29 283 1 21 36 0 0 chr11 500139 500167 -148283305 + GC_rich Low_complexity Low_complexity 1 28 0 2096 80 21 11 chr11 501858 502145 -148281327 + AluSq SINE Alu 8 297 -16 781 187 42 37 chr11 502152 502366 -148281106 + L1MB3 LINE L1 5967 6181 -2 183 80 0 0 chr11 502916 502941 -148280531 + (CCGAG)n Simple_repeat Simple_repeat 5 29 0 21 89 0 0 chr11 504887 504943 -148278529 + GC_rich Low_complexity Low_complexity 1 56 0 341 236 7 0 chr11 505124 505272 -148278200 + (CA)n Simple_repeat Simple_repeat 1 149 0 366 252 78 9 chr11 505277 505392 -148278080 + L1MA9 LINE L1 6152 6274 -38 285 263 93 85 chr11 506073 506320 -148277152 + SN5 Other centromeric 1 249 -206 367 74 19 0 chr11 506617 506671 -148276801 + L1MC1 LINE L1 6276 6330 -3 404 340 28 49 chr11 506695 506942 -148276530 - L3 LINE CR1 -541 1036 795 1363 97 5 0 chr11 507135 507364 -148276108 - AluSg/x SINE Alu 0 326 97 279 277 29 36 chr11 507618 507755 -148275717 + MLT1A2 LTR MaLR 239 374 0 787 198 74 33 chr11 507961 508204 -148275268 + MLT1B LTR MaLR 8 260 -130 381 246 131 0 chr11 508433 508563 -148274909 - LTR67 LTR ERVL -1 556 410 234 355 0 0 chr11 508882 508975 -148274497 + MLT1J LTR MaLR 342 434 -77 243 0 0 0 chr11 509140 509167 -148274305 + (CTG)n Simple_repeat Simple_repeat 2 28 0 658 109 0 0 chr11 509688 509780 -148273692 + AluSp/q SINE Alu 210 301 -12 325 282 30 0 chr11 510195 510297 -148273175 + MIR SINE MIR 50 157 -63 2040 116 41 0 chr11 510710 511003 -148272469 + AluSx SINE Alu 1 305 -7 2023 122 28 0 chr11 511003 511291 -148272181 + AluSq SINE Alu 1 296 -17 224 224 0 20 chr11 511459 511508 -148271964 + CT-rich Low_complexity Low_complexity 4 51 0 506 236 202 55 chr11 511509 511801 -148271671 + MLT1J LTR MaLR 36 370 -141 1211 190 5 0 chr11 512230 512441 -148271031 + AluJo SINE Alu 1 212 -100 255 61 0 0 chr11 513442 513475 -148269997 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 671 276 24 68 chr11 513577 513791 -148269681 + L1M4 LINE L1 3106 3309 -2837 2144 139 0 0 chr11 513791 514101 -148269371 + AluSx SINE Alu 1 310 -2 671 276 24 68 chr11 514101 514136 -148269336 + L1M4 LINE L1 3309 3344 -2802 782 156 57 28 chr11 514199 514340 -148269132 + FAM SINE Alu 24 168 -17 941 101 7 0 chr11 514410 514549 -148268923 + AluSg/x SINE Alu 170 309 -1 1964 100 47 0 chr11 514567 514846 -148268626 + AluSg SINE Alu 1 292 -18 1741 128 0 0 chr11 514896 515139 -148268333 + AluSx SINE Alu 1 243 -69 1214 127 0 0 chr11 519038 519211 -148264261 + AluSp SINE Alu 130 302 -11 246 319 104 21 chr11 519522 519666 -148263806 - L1MEc LINE L1 -1892 5049 4894 688 261 55 25 chr11 520128 520475 -148262997 - L1MEc LINE L1 -3597 3344 2984 2226 120 0 3 chr11 520475 520783 -148262689 - AluSx SINE Alu -5 307 1 688 261 55 25 chr11 520783 520799 -148262673 - L1MEc LINE L1 -3957 2984 2970 484 330 35 40 chr11 520818 520856 -148262616 - L1MEc LINE L1 -4313 2809 2772 1817 185 0 0 chr11 520856 521153 -148262319 - AluJb SINE Alu -11 301 5 484 330 35 40 chr11 521153 521314 -148262158 - L1MEc LINE L1 -4350 2772 2611 2004 126 0 32 chr11 521318 521487 -148261985 - AluSg SINE Alu -10 300 144 2200 96 10 3 chr11 521487 521789 -148261683 - AluSq SINE Alu -9 304 1 2004 126 0 32 chr11 521789 521929 -148261543 - AluSg SINE Alu -166 144 1 1102 79 0 0 chr11 521932 522071 -148261401 - AluSq/x SINE Alu -174 139 1 238 305 30 8 chr11 522072 522203 -148261269 - L1MEc LINE L1 -4969 1454 1321 27 49 0 0 chr11 528128 528169 -148255303 + GC_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr11 528288 528331 -148255141 + GC_rich Low_complexity Low_complexity 1 43 0 43 47 0 0 chr11 528415 528479 -148254993 + GC_rich Low_complexity Low_complexity 1 64 0 26 64 0 0 chr11 528545 528592 -148254880 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 528696 528717 -148254755 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 530647 530689 -148252783 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 3 chr11 531849 532151 -148251321 - AluSx SINE Alu -11 301 1 1718 259 44 16 chr11 732718 733424 -148050048 + L1ME1 LINE L1 3181 3906 -2240 725 241 97 17 chr11 733432 733473 -148049999 - MLT2D LTR ERVL 0 414 378 312 27 0 0 chr11 733473 733510 -148049962 + (TG)n Simple_repeat Simple_repeat 1 37 0 725 241 97 17 chr11 733510 733705 -148049767 - MLT2D LTR ERVL -36 378 159 1517 118 41 0 chr11 733710 733931 -148049541 - MER30 DNA MER1_type 0 230 1 1035 167 88 26 chr11 733931 734262 -148049210 + MSTB1 LTR MaLR 8 457 0 683 270 23 0 chr11 734262 734426 -148049046 - MLT2D LTR ERVL -246 168 1 977 245 121 13 chr11 734432 734746 -148048726 + L1ME1 LINE L1 3912 4259 -1887 2978 233 42 50 chr11 734750 736509 -148046963 + L1ME1 LINE L1 4344 6096 -70 2169 112 3 6 chr11 736509 736822 -148046650 + AluSx SINE Alu 1 312 0 2978 233 42 50 chr11 736822 736888 -148046584 + L1ME1 LINE L1 6096 6161 -5 497 302 40 31 chr11 736890 737112 -148046360 + ERVL LTR ERVL 2313 2536 -3228 1196 303 27 13 chr11 737136 737509 -148045963 + ERVL LTR ERVL 2492 2869 -2127 773 371 59 19 chr11 737522 738195 -148045277 + ERVL LTR ERVL 3134 3833 -1821 425 297 148 5 chr11 738751 738953 -148044519 + LTR16A1 LTR ERVL 2 232 -225 259 232 18 0 chr11 738996 739052 -148044420 + LTR16A1 LTR ERVL 399 455 -2 606 290 90 33 chr11 740076 740441 -148043031 + L1MCc LINE L1 24 409 -6014 3008 264 52 47 chr11 740712 741169 -148042303 + L1MCc LINE L1 865 1318 -5623 2201 67 3 3 chr11 741169 741495 -148041977 + AluSc SINE Alu 1 326 0 3008 264 52 47 chr11 741495 741536 -148041936 + L1MCc LINE L1 1318 1357 -5584 1671 176 3 22 chr11 741536 741849 -148041623 + AluJo SINE Alu 1 307 -5 3008 264 52 47 chr11 741849 742371 -148041101 + L1MCc LINE L1 1357 1875 -5066 2032 89 64 0 chr11 742371 742652 -148040820 - AluSq SINE Alu -14 299 1 3008 264 52 47 chr11 742652 743496 -148039976 + L1MCc LINE L1 1875 2937 -4004 916 205 0 6 chr11 743496 743657 -148039815 + FRAM SINE Alu 1 160 -6 3008 264 52 47 chr11 743657 744021 -148039451 + L1MCc LINE L1 2937 3297 -3644 2705 234 66 57 chr11 744005 744205 -148039267 + L1MB7 LINE L1 3910 4107 -2039 * 2361 44 14 14 chr11 744205 744502 -148038970 - AluY SINE Alu -12 299 3 2705 234 66 57 chr11 744502 745458 -148038014 + L1MB7 LINE L1 4107 5076 -1070 424 196 55 8 chr11 745463 745632 -148037840 - MER20 DNA MER1_type 0 219 7 987 212 31 16 chr11 745639 745975 -148037497 + L1MB7 LINE L1 5089 5425 -746 242 274 78 0 chr11 746080 746182 -148037290 + L1MB7 LINE L1 5461 5570 -774 397 240 6 6 chr11 746349 746520 -148036952 + (TG)n Simple_repeat Simple_repeat 2 172 0 2588 36 0 0 chr11 747263 747571 -148035901 + AluY SINE Alu 1 308 -3 303 179 0 45 chr11 747863 747930 -148035542 - L1PA11 LINE L1 -2 6172 6109 334 320 53 53 chr11 748438 748682 -148034790 + L1ME3 LINE L1 5887 6130 -32 250 253 81 20 chr11 750047 750146 -148033326 + MIR SINE MIR 44 148 -114 1144 180 70 22 chr11 751800 752080 -148031392 + MLT1B LTR MaLR 60 370 -4 2740 231 66 71 chr11 753838 753940 -148029532 + MER45B DNA AcHobo 25 126 -1455 834 139 8 0 chr11 753940 754069 -148029403 - FLAM_C SINE Alu -3 130 1 2740 231 66 71 chr11 754069 754904 -148028568 + MER45B DNA AcHobo 126 957 -83 1230 101 62 0 chr11 755209 755388 -148028084 + MER107 DNA MER1_type 8 197 0 592 309 98 21 chr11 755616 755901 -148027571 - LTR16B LTR ERVL -14 450 144 281 338 157 12 chr11 755984 756404 -148027068 + L1MC5 LINE L1 7351 7831 -130 27 49 0 0 chr11 758712 758753 -148024719 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 758847 758868 -148024604 + GC_rich Low_complexity Low_complexity 1 21 0 207 325 0 0 chr11 760180 760263 -148023209 + C-rich Low_complexity Low_complexity 6 88 0 242 241 89 13 chr11 762207 762286 -148021186 - MLT1H1 LTR MaLR -5 550 466 1411 232 135 18 chr11 762891 763327 -148020145 + L1MB7 LINE L1 5689 6175 -9 453 262 152 5 chr11 763433 763624 -148019848 - MER58B DNA MER1_type 0 341 123 3430 209 20 7 chr11 763629 764326 -148019146 - L1MB3 LINE L1 -2 6181 5476 1307 162 5 0 chr11 764328 764550 -148018922 - AluSg/x SINE Alu -5 307 85 483 241 0 19 chr11 764591 764699 -148018773 - MER58B DNA MER1_type -230 111 6 182 163 70 0 chr11 765106 765149 -148018323 + L2 LINE L2 3016 3061 -211 905 202 37 24 chr11 765738 766008 -148017464 - MER33 DNA MER1_type -38 325 2 2064 197 84 12 chr11 766043 766555 -148016917 + MER74A LTR ERVL 8 556 -2 251 301 29 19 chr11 766574 766677 -148016795 - MIR SINE MIR -62 146 43 189 248 99 30 chr11 766872 766973 -148016499 + MIR3 SINE MIR 83 190 -18 2319 277 67 26 chr11 767375 768299 -148015173 + L1MEc LINE L1 22 983 -5413 3105 243 45 52 chr11 768550 768923 -148014549 + L1MEc LINE L1 1031 1405 -4991 1993 125 3 0 chr11 768923 769211 -148014261 - AluSp SINE Alu -3 310 22 3105 243 45 52 chr11 769211 769247 -148014225 + L1MEc LINE L1 1405 1440 -4956 207 100 0 0 chr11 769247 769277 -148014195 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 3105 243 45 52 chr11 769277 769333 -148014139 + L1MEc LINE L1 1440 1495 -4901 2810 155 73 2 chr11 769333 769837 -148013635 + L1MB3 LINE L1 5643 6182 -1 3105 243 45 52 chr11 769837 770742 -148012730 + L1MEc LINE L1 1495 2394 -4002 1101 161 8 42 chr11 770792 771028 -148012444 - MER96B DNA MER1_type? 0 417 190 629 219 29 7 chr11 771029 771166 -148012306 + MLT1F1 LTR MaLR 419 558 -9 6439 249 80 12 chr11 771180 773389 -148010083 + L1MEc LINE L1 2364 4722 -1493 274 107 53 13 chr11 773561 773636 -148009836 + (TA)n Simple_repeat Simple_repeat 2 79 0 817 194 0 48 chr11 773652 773817 -148009655 - AluJo SINE Alu -30 282 126 333 350 38 25 chr11 773828 773988 -148009484 - L1 LINE L1 -1300 4846 4685 239 327 36 42 chr11 774088 774253 -148009219 + L1M4 LINE L1 4531 4694 -1452 287 347 150 16 chr11 774293 774679 -148008793 - HAL1 LINE L1 -843 1664 1227 1476 184 32 0 chr11 774936 775214 -148008258 - AluJo SINE Alu -25 287 1 8298 58 2 5 chr11 775433 776442 -148007030 - LTR13 LTR ERVK 0 1007 2 747 233 142 0 chr11 776546 776786 -148006686 + L1MC4a LINE L1 7035 7308 -500 268 298 26 0 chr11 776986 777100 -148006372 + L1MEc LINE L1 268 384 -6012 504 209 17 0 chr11 777133 777305 -148006167 + GA-rich Low_complexity Low_complexity 2 176 0 399 264 41 8 chr11 777307 777428 -148006044 + L1MEc LINE L1 357 481 -5915 739 341 41 0 chr11 777471 777840 -148005632 + L1MEc LINE L1 559 942 -5454 401 252 49 0 chr11 777872 777995 -148005477 + L1MC4 LINE L1 7914 8042 0 258 288 7 14 chr11 778443 778589 -148004883 + (CA)n Simple_repeat Simple_repeat 1 145 0 2340 68 0 0 chr11 778609 778902 -148004570 - AluY SINE Alu -18 293 1 226 291 58 0 chr11 779043 779129 -148004343 - L2 LINE L2 -609 2705 2615 1629 181 22 16 chr11 779198 779518 -148003954 + L1MB3 LINE L1 5862 6183 0 599 155 10 0 chr11 780473 780576 -148002896 - L1MB7 LINE L1 -11 6173 6070 481 188 52 155 chr11 781630 781843 -148001629 - L1MB7 LINE L1 -75 6103 5913 275 302 32 8 chr11 781865 781991 -148001481 - ERVL LTR ERVL -46 5718 5590 21 0 0 0 chr11 782020 782041 -148001431 + AT_rich Low_complexity Low_complexity 1 21 0 2275 95 20 0 chr11 782108 782414 -148001058 - AluSx SINE Alu 0 312 1 2449 298 70 18 chr11 782414 783416 -148000056 - ERVL LTR ERVL -195 5569 4516 1335 252 32 28 chr11 783631 784064 -147999408 - ERVL LTR ERVL -1535 4229 3795 * 1801 248 71 8 chr11 784048 784540 -147998932 - ERVL LTR ERVL -2176 3588 3066 1702 169 66 3 chr11 784595 784974 -147998498 + L1MC2 LINE L1 5928 6330 -14 2487 263 58 8 chr11 784984 785710 -147997762 - ERVL LTR ERVL -3180 2584 1823 228 67 0 0 chr11 786760 786790 -147996682 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1414 204 33 84 chr11 786798 787191 -147996281 - MLT1A2 LTR MaLR 0 374 2 206 222 99 0 chr11 788868 788949 -147994523 + (CATG)n Simple_repeat Simple_repeat 1 89 0 257 254 0 65 chr11 789140 789325 -147994147 + G-rich Low_complexity Low_complexity 4 176 0 * 488 231 29 0 chr11 789191 789432 -147994040 + (GGGTG)n Simple_repeat Simple_repeat 1 247 0 240 111 0 0 chr11 791172 791208 -147992264 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 423 165 0 0 chr11 795052 795137 -147988335 + (TG)n Simple_repeat Simple_repeat 2 86 0 288 77 0 0 chr11 795610 795649 -147987823 + (GA)n Simple_repeat Simple_repeat 1 39 0 466 209 11 33 chr11 795786 795968 -147987504 + G-rich Low_complexity Low_complexity 1 178 0 * 549 164 0 53 chr11 795950 796139 -147987333 + GA-rich Low_complexity Low_complexity 1 179 0 323 179 0 0 chr11 799703 799759 -147983713 + MIR SINE MIR 90 145 -63 307 128 58 0 chr11 801068 801154 -147982318 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 206 269 64 13 chr11 801970 802048 -147981424 - L2 LINE L2 -210 3062 2981 318 265 128 0 chr11 803001 803103 -147980369 - MER45A DNA AcHobo 0 178 64 902 114 0 50 chr11 803103 803243 -147980229 + FLAM_C SINE Alu 1 133 0 211 273 0 0 chr11 804222 804277 -147979195 + C-rich Low_complexity Low_complexity 5 59 0 833 270 34 0 chr11 806851 807114 -147976358 - MLT1E2 LTR MaLR 0 626 355 2067 157 23 0 chr11 807166 807509 -147975963 - L1MB3 LINE L1 -7 6176 5826 1732 142 4 25 chr11 807837 808118 -147975354 + AluJo SINE Alu 22 296 -16 2065 111 0 20 chr11 808120 808449 -147975023 + AluSq SINE Alu 1 313 0 1159 128 0 0 chr11 808449 808613 -147974859 + AluSg/x SINE Alu 134 297 -15 315 0 0 0 chr11 808617 808632 -147974840 + (TG)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chr11 808632 808667 -147974805 + (TG)n Simple_repeat Simple_repeat 2 36 0 201 40 0 100 chr11 808690 808740 -147974732 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 767 100 0 27 chr11 810783 810893 -147972579 + U6 snRNA snRNA 1 107 0 7763 116 10 9 chr11 810893 813060 -147970412 + L1PA11 LINE L1 3979 6153 -21 2596 165 66 23 chr11 813066 813506 -147969966 - Tigger3b DNA MER2_type -2440 588 117 2944 88 0 3 chr11 813506 813882 -147969590 + THE1C LTR MaLR 1 375 0 2596 165 66 23 chr11 813882 814005 -147969467 - Tigger3b DNA MER2_type -2911 117 1 7050 180 66 19 chr11 814005 815100 -147968372 + ERVL LTR ERVL 2185 3371 -2393 2157 132 50 19 chr11 815100 815464 -147968008 - THE1C LTR MaLR 0 375 1 7050 180 66 19 chr11 815464 815865 -147967607 + ERVL LTR ERVL 3371 3752 -2012 3851 246 77 44 chr11 815865 816686 -147966786 - THE1C-int LTR MaLR -205 1446 554 1579 57 0 0 chr11 816686 816880 -147966592 - L1PA4 LINE L1 0 6155 5962 3851 246 77 44 chr11 816880 817454 -147966018 - THE1C-int LTR MaLR -1097 554 1 1294 200 134 45 chr11 817454 817789 -147965683 - MLT1A1 LTR MaLR 0 365 1 240 234 16 31 chr11 818281 818345 -147965127 + MLT1I LTR MaLR 347 409 0 470 208 42 76 chr11 818734 818878 -147964594 + MLT1J2 LTR MaLR 20 158 -292 665 224 61 0 chr11 819024 819171 -147964301 + MER5A DNA MER1_type 8 163 -26 289 136 0 0 chr11 819182 819226 -147964246 + AluSx SINE Alu 1 44 -256 246 217 0 0 chr11 819234 819280 -147964192 - MSTD LTR MaLR -127 269 224 1812 137 0 0 chr11 819284 819546 -147963926 + AluSx SINE Alu 41 302 -10 224 311 0 0 chr11 819564 819638 -147963834 - L2 LINE L2 -2241 1073 1000 993 229 121 36 chr11 820030 820310 -147963162 - MLT2B1 LTR ERVL -1 519 205 2092 161 83 14 chr11 820310 820731 -147962741 - LTR7 LTR ERV1 0 450 1 993 229 121 36 chr11 820731 820782 -147962690 - MLT2B1 LTR ERVL -315 205 160 387 41 0 0 chr11 820803 820852 -147962620 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 6346 62 16 73 chr11 820852 822560 -147960912 + SVA Other Other 57 1386 0 2074 112 3 0 chr11 823354 823663 -147959809 - AluSg SINE Alu 0 310 1 924 292 111 37 chr11 823664 824096 -147959376 - L1M4 LINE L1 -1275 4871 4408 511 73 0 12 chr11 824109 824191 -147959281 + LTR10E LTR ERV1 4 84 -549 2310 107 153 20 chr11 824852 825310 -147958162 + LTR10E LTR ERV1 72 590 -43 999 234 55 64 chr11 825328 825861 -147957611 + HERVI LTR ERV1 3 314 -6335 1219 165 93 8 chr11 826079 826519 -147956953 + HERVI LTR ERV1 840 2694 -3955 723 260 0 6 chr11 826510 826691 -147956781 + HERVI LTR ERV1 3138 3317 -4468 * 3378 172 46 54 chr11 826672 827581 -147955891 + HERVI LTR ERV1 953 4388 -3397 4141 51 7 28 chr11 827581 827838 -147955634 + LTR10C LTR ERV1 1 262 -329 1368 199 102 60 chr11 827838 828270 -147955202 - LTR7 LTR ERV1 0 450 1 4141 51 7 28 chr11 828270 828388 -147955084 + LTR10C LTR ERV1 262 381 -210 3514 57 2 13 chr11 828388 828841 -147954631 + LTR7 LTR ERV1 1 448 -2 4141 51 7 28 chr11 828841 829068 -147954404 + LTR10C LTR ERV1 381 591 0 981 35 0 7 chr11 829069 829212 -147954260 + Harlequin LTR ERV1 1587 1728 -5168 277 244 39 13 chr11 829212 829290 -147954182 - LTR8 LTR ERV1 -456 235 156 4449 128 33 27 chr11 829294 830114 -147953358 + Harlequin LTR ERV1 2160 2984 -3912 2816 247 9 9 chr11 830176 830935 -147952537 + Harlequin LTR ERV1 3345 5911 -738 2823 94 163 16 chr11 831091 831643 -147951829 + LTR10E LTR ERV1 1 633 0 593 185 86 0 chr11 831644 831795 -147951677 - MLT2B2 LTR ERVL -351 164 1 1275 181 39 11 chr11 832143 832425 -147951047 - MLT1B LTR MaLR -3 387 98 1123 158 0 0 chr11 832427 832592 -147950880 - FRAM SINE Alu 0 166 2 854 106 194 12 chr11 832593 832763 -147950709 - MSTA LTR MaLR 0 428 228 953 152 25 15 chr11 832764 832959 -147950513 + THE1C LTR MaLR 178 375 0 1671 285 93 17 chr11 833016 833137 -147950335 + HERVL LTR ERVL 1585 1695 -3301 2297 156 34 3 chr11 833137 833515 -147949957 + MLT1B LTR MaLR 1 390 0 1671 285 93 17 chr11 833515 834115 -147949357 + HERVL LTR ERVL 1695 2357 -2639 1026 213 17 0 chr11 834154 834382 -147949090 + MLT2B1 LTR ERVL 1 232 -288 2138 141 39 0 chr11 834382 834766 -147948706 - MSTB1 LTR MaLR 0 432 34 618 217 22 7 chr11 834815 834953 -147948519 + MLT2B1 LTR ERVL 331 470 -50 459 383 27 6 chr11 835158 835495 -147947977 + HERVL LTR ERVL 3926 4269 -1385 275 367 44 39 chr11 835904 836473 -147946999 + HERVL LTR ERVL 4741 5312 -342 2453 161 14 45 chr11 836528 837043 -147946429 - MLT2B3 LTR ERVL -1 553 55 548 92 0 0 chr11 837044 837128 -147946344 + MLT2B3 LTR ERVL 1 84 -470 1314 130 80 58 chr11 837128 837504 -147945968 + MSTA LTR MaLR 1 401 -27 1635 168 47 0 chr11 837504 837857 -147945615 - AluSx SINE Alu 0 367 1 10023 169 10 9 chr11 837898 839547 -147943925 + MSTB-int LTR MaLR 1 1651 0 2170 153 112 5 chr11 839547 839932 -147943540 + MSTB LTR MaLR 1 426 0 326 137 0 0 chr11 839932 839983 -147943489 + MLT2B3 LTR ERVL 80 130 -424 986 211 133 58 chr11 839983 840381 -147943091 - MSTC LTR MaLR 0 428 1 5513 236 63 44 chr11 840381 841867 -147941605 - MSTC-int LTR MaLR 0 1735 212 2417 57 0 0 chr11 841867 842163 -147941309 - AluY SINE Alu -15 296 1 5513 236 63 44 chr11 842163 842360 -147941112 - MSTC-int LTR MaLR -1523 212 20 482 249 29 23 chr11 842379 842552 -147940920 - MLT1A1 LTR MaLR 0 365 192 584 204 8 54 chr11 842593 842754 -147940718 - MLT1A1 LTR MaLR -183 182 30 1894 114 48 14 chr11 842754 843044 -147940428 + AluSx SINE Alu 1 300 -12 584 204 8 54 chr11 843044 843073 -147940399 - MLT1A1 LTR MaLR -335 30 1 * 1583 186 32 74 chr11 843073 843476 -147939996 + MLT2B3 LTR ERVL 130 515 -39 2308 86 0 3 chr11 843503 843805 -147939667 - AluSc SINE Alu -8 301 1 225 163 0 0 chr11 843811 843854 -147939618 + MLT2B3 LTR ERVL 471 513 -7 23866 202 44 31 chr11 843859 845152 -147938320 + ERVL-B3-B3 LTR ERVL 3 1278 -4486 3638 133 9 6 chr11 845152 845677 -147937795 + MER1A DNA MER1_type 1 527 0 23866 202 44 31 chr11 845677 847632 -147935840 + ERVL-B3-B3 LTR ERVL 1278 3207 -2557 2061 111 3 0 chr11 847632 847921 -147935551 + AluSx SINE Alu 23 312 0 23866 202 44 31 chr11 847921 849777 -147933695 + ERVL-B3-B3 LTR ERVL 3207 5189 -575 2478 58 0 3 chr11 849777 850088 -147933384 + AluY SINE Alu 1 310 -1 23866 202 44 31 chr11 850088 850665 -147932807 + ERVL-B3-B3 LTR ERVL 5189 5757 -7 2340 160 59 30 chr11 850665 851159 -147932313 + MLT2B3 LTR ERVL 1 508 -46 447 52 0 0 chr11 851161 851219 -147932253 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 1014 126 0 0 chr11 851222 851338 -147932134 + (TCTG)n Simple_repeat Simple_repeat 1 283 0 1014 126 0 0 chr11 851338 851505 -147931967 + (TCTG)n Simple_repeat Simple_repeat 2 168 0 534 295 68 31 chr11 851662 851987 -147931485 + LTR16A LTR ERVL 87 423 -27 1304 221 67 38 chr11 852360 852780 -147930692 - MLT1C LTR MaLR 0 467 36 609 209 54 106 chr11 853392 853534 -147929938 - MER39 LTR ERV1 -6 682 534 2002 110 4 4 chr11 853534 853815 -147929657 + AluSx SINE Alu 30 310 -2 609 209 54 106 chr11 853815 853917 -147929555 - MER39 LTR ERV1 -154 534 450 2552 124 72 10 chr11 853917 854320 -147929152 - MSTA LTR MaLR 0 428 1 609 209 54 106 chr11 854320 854358 -147929114 - MER39 LTR ERV1 -238 450 412 764 262 161 0 chr11 854363 854611 -147928861 - MSTD LTR MaLR -1 395 108 330 270 78 26 chr11 855179 855294 -147928178 - L2 LINE L2 -2 3311 3191 246 308 132 0 chr11 858425 858607 -147924865 + L2 LINE L2 2556 2761 -553 245 279 0 0 chr11 859064 859125 -147924347 + MER89 LTR ERV1 2 62 -497 342 271 92 28 chr11 859133 859351 -147924121 + MER89 LTR ERV1 182 413 -146 2250 87 0 3 chr11 859378 859678 -147923794 - AluY SINE Alu -12 299 1 5689 203 27 33 chr11 859693 860157 -147923315 - L1MB7 LINE L1 -11 6173 5708 1988 130 0 3 chr11 860157 860470 -147923002 + AluSx SINE Alu 1 312 0 5689 203 27 33 chr11 860470 860536 -147922936 - L1MB7 LINE L1 -476 5708 5643 414 0 0 0 chr11 860536 860582 -147922890 + (CA)n Simple_repeat Simple_repeat 2 47 0 5689 203 27 33 chr11 860582 861196 -147922276 - L1MB7 LINE L1 -541 5643 5027 2353 103 0 0 chr11 861196 861508 -147921964 - AluSx SINE Alu 0 312 1 5689 203 27 33 chr11 861508 861707 -147921765 - L1MB7 LINE L1 -1157 5027 4828 872 80 0 0 chr11 861707 861819 -147921653 + HY1 scRNA scRNA 1 112 0 5689 203 27 33 chr11 861819 862452 -147921020 - L1MB7 LINE L1 -1356 4828 4211 1936 178 36 22 chr11 862452 862812 -147920660 - MLT1A1 LTR MaLR 0 365 1 5689 203 27 33 chr11 862812 863192 -147920280 - L1MB7 LINE L1 -1973 4211 3830 576 219 41 0 chr11 863215 863361 -147920111 + MER89 LTR ERV1 407 558 -1 417 280 57 96 chr11 864371 864703 -147918769 + L2 LINE L2 2953 3271 -1 662 286 130 0 chr11 865170 865355 -147918117 - MER3 DNA MER1_type 0 209 1 198 152 136 91 chr11 865954 866020 -147917452 + L2 LINE L2 3027 3095 -177 204 183 50 0 chr11 866278 866338 -147917134 + G-rich Low_complexity Low_complexity 2 64 0 22 70 0 0 chr11 866445 866488 -147916984 + GC_rich Low_complexity Low_complexity 1 43 0 233 174 26 70 chr11 866508 866623 -147916849 + (CCCG)n Simple_repeat Simple_repeat 3 112 0 283 261 7 25 chr11 868277 868556 -147914916 + G-rich Low_complexity Low_complexity 1 273 0 243 213 0 0 chr11 869463 869538 -147913934 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 333 14 0 chr11 869790 869859 -147913613 + MIR SINE MIR 84 153 -109 295 168 15 128 chr11 873421 873617 -147909855 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 509 213 19 0 chr11 874265 874373 -147909099 - L1MA10 LINE L1 -2 6332 6223 1266 269 43 38 chr11 874777 875377 -147908095 - L1ME2 LINE L1 -311 5853 5254 350 232 6 39 chr11 926336 926674 -147856798 + G-rich Low_complexity Low_complexity 1 326 0 206 337 6 33 chr11 926683 926864 -147856608 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 * 370 333 0 32 chr11 926738 926924 -147856548 + G-rich Low_complexity Low_complexity 1 180 0 1973 123 10 3 chr11 927352 927644 -147855828 - AluSq SINE Alu -19 294 1 298 239 77 58 chr11 927688 927843 -147855629 - L1MC5 LINE L1 -927 7034 6877 387 0 0 0 chr11 928032 928075 -147855397 + (CA)n Simple_repeat Simple_repeat 2 44 0 529 343 26 22 chr11 929094 929362 -147854110 - L1MC4 LINE L1 -16 8026 7758 2640 102 5 30 chr11 929475 929848 -147853624 + THE1B LTR MaLR 1 364 0 4562 125 38 2 chr11 929848 930649 -147852823 + THE1B-int LTR MaLR 1 829 -751 2846 283 28 45 chr11 931164 931760 -147851712 - L1MC4a LINE L1 -288 7520 6948 2111 119 10 3 chr11 931760 932071 -147851401 - AluSq SINE Alu 0 313 1 2846 283 28 45 chr11 932071 932536 -147850936 - L1MC4a LINE L1 -860 6948 6477 280 264 27 0 chr11 934039 934128 -147849344 + MIR3 SINE MIR 63 157 -51 243 246 35 0 chr11 934765 934822 -147848650 + MIR SINE MIR 64 122 -86 689 148 9 0 chr11 935068 935176 -147848296 + FRAM SINE Alu 62 170 -6 34 65 0 0 chr11 935948 936010 -147847462 + AT_rich Low_complexity Low_complexity 1 62 0 186 43 0 0 chr11 936708 936731 -147846741 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 401 353 107 43 chr11 937723 938191 -147845281 - HAL1 LINE L1 -1206 1301 880 245 346 0 32 chr11 938386 938571 -147844901 + GA-rich Low_complexity Low_complexity 1 179 0 379 335 12 12 chr11 939799 939969 -147843503 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 225 65 0 0 chr11 941183 941214 -147842258 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 856 298 79 74 chr11 942774 943002 -147840470 - L1MC5 LINE L1 -397 7564 7339 231 61 0 0 chr11 943002 943035 -147840437 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 856 298 79 74 chr11 943035 943797 -147839675 - L1MC5 LINE L1 -622 7339 6555 1412 241 33 9 chr11 943874 944301 -147839171 - L1PA16 LINE L1 -5 6161 5725 227 213 0 29 chr11 948215 948351 -147835121 + G-rich Low_complexity Low_complexity 1 132 0 222 227 0 0 chr11 949316 949391 -147834081 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 333 14 0 chr11 949643 949712 -147833760 + MIR SINE MIR 84 153 -109 264 252 9 28 chr11 955526 955633 -147827839 + (CACCC)n Simple_repeat Simple_repeat 2 106 0 567 139 0 0 chr11 956828 956929 -147826543 + (TG)n Simple_repeat Simple_repeat 2 102 0 222 211 35 0 chr11 957381 957622 -147825850 + (GGGTG)n Simple_repeat Simple_repeat 1 249 0 240 111 0 0 chr11 959357 959393 -147824079 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 208 135 0 27 chr11 961121 961158 -147822314 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 318 250 0 40 chr11 962133 962209 -147821263 + L1M4 LINE L1 4581 4653 -1493 274 107 53 13 chr11 962381 962456 -147821016 + (TA)n Simple_repeat Simple_repeat 2 79 0 824 194 0 48 chr11 962472 962637 -147820835 - AluJo SINE Alu -30 282 126 364 350 38 25 chr11 962648 962808 -147820664 - L1 LINE L1 -1300 4846 4685 353 365 65 34 chr11 962810 963073 -147820399 + L1M4 LINE L1 4424 4694 -1452 * 680 364 114 15 chr11 963066 963660 -147819812 - L1MEd LINE L1 -843 1647 954 1518 184 32 0 chr11 963756 964034 -147819438 - AluJo SINE Alu -25 287 1 8315 58 2 5 chr11 964252 965261 -147818211 - LTR13 LTR ERVK 0 1007 2 677 233 142 0 chr11 965365 965605 -147817867 + L1MC4a LINE L1 7035 7308 -500 250 253 24 0 chr11 965805 965888 -147817584 + L1MEc LINE L1 268 352 -6044 526 213 13 0 chr11 965895 966125 -147817347 + GA-rich Low_complexity Low_complexity 1 233 0 863 322 80 14 chr11 966127 966677 -147816795 + L1MEc LINE L1 357 942 -5454 419 236 49 0 chr11 966709 966832 -147816640 + L1MC4 LINE L1 7914 8042 0 294 293 6 12 chr11 967280 967444 -147816028 + (CA)n Simple_repeat Simple_repeat 1 163 0 2398 61 0 0 chr11 967464 967757 -147815715 - AluY SINE Alu -18 293 1 238 291 58 0 chr11 967898 967984 -147815488 - L2 LINE L2 -609 2705 2615 1647 181 22 16 chr11 968053 968373 -147815099 + L1MB3 LINE L1 5862 6183 0 569 165 10 0 chr11 969328 969431 -147814041 - L1MB7 LINE L1 -11 6173 6070 445 244 71 0 chr11 971049 971176 -147812296 - L1MB7 LINE L1 -136 6048 5913 250 302 32 8 chr11 971198 971324 -147812148 - ERVL LTR ERVL -46 5718 5590 2204 98 20 0 chr11 971441 971736 -147811736 - AluSx SINE Alu -11 301 1 2190 298 70 18 chr11 971736 972735 -147810737 - ERVL LTR ERVL -195 5569 4519 1325 254 32 28 chr11 972953 973386 -147810086 - ERVL LTR ERVL -1535 4229 3795 * 1801 248 71 8 chr11 973370 973862 -147809610 - ERVL LTR ERVL -2176 3588 3066 1937 165 80 3 chr11 973917 974304 -147809168 + L1MC2 LINE L1 5928 6344 0 2487 263 58 8 chr11 974306 975032 -147808440 - ERVL LTR ERVL -3180 2584 1823 228 67 0 0 chr11 976079 976109 -147807363 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1405 204 33 84 chr11 976117 976509 -147806963 - MLT1A2 LTR MaLR 0 374 3 236 200 36 18 chr11 979088 979143 -147804329 + MIR SINE MIR 90 145 -63 307 128 58 0 chr11 980449 980535 -147802937 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 206 269 64 13 chr11 981348 981426 -147802046 - L2 LINE L2 -210 3062 2981 318 265 128 0 chr11 982381 982483 -147800989 - MER45A DNA AcHobo 0 178 64 902 114 0 50 chr11 982483 982623 -147800849 + FLAM_C SINE Alu 1 133 0 525 218 18 0 chr11 983567 983677 -147799795 - MLT1E2 LTR MaLR -160 466 355 2067 157 23 0 chr11 983729 984072 -147799400 - L1MB3 LINE L1 -7 6176 5826 1803 142 4 25 chr11 984400 984681 -147798791 + AluJo SINE Alu 22 296 -16 2060 108 0 25 chr11 984695 984969 -147798503 + AluSq SINE Alu 14 282 -31 207 31 0 31 chr11 984969 985001 -147798471 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 2060 108 0 25 chr11 985001 985012 -147798460 + AluSq SINE Alu 282 292 -21 1232 117 0 0 chr11 985012 985174 -147798298 + AluSg/x SINE Alu 134 295 -17 351 0 0 0 chr11 985178 985191 -147798281 + (TG)n Simple_repeat Simple_repeat 1 52 0 351 0 0 0 chr11 985191 985230 -147798242 + (TG)n Simple_repeat Simple_repeat 2 40 0 201 40 0 100 chr11 985253 985303 -147798169 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 381 22 0 0 chr11 985425 985471 -147798001 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 876 129 0 0 chr11 985473 985601 -147797871 + (TCTG)n Simple_repeat Simple_repeat 1 275 0 876 129 0 0 chr11 985601 985748 -147797724 + (TCTG)n Simple_repeat Simple_repeat 2 148 0 584 295 68 31 chr11 985905 986230 -147797242 + LTR16A LTR ERVL 87 423 -27 1368 221 67 38 chr11 986603 987023 -147796449 - MLT1C LTR MaLR 0 467 36 664 202 70 105 chr11 987633 987775 -147795697 - MER39 LTR ERV1 -6 682 537 2109 109 3 3 chr11 987775 988058 -147795414 + AluSx SINE Alu 30 312 0 664 202 70 105 chr11 988058 988160 -147795312 - MER39 LTR ERV1 -151 537 454 2122 136 66 24 chr11 988160 988571 -147794901 - MSTA LTR MaLR 0 428 1 664 202 70 105 chr11 988571 988613 -147794859 - MER39 LTR ERV1 -234 454 412 810 210 194 32 chr11 988614 988862 -147794610 - MSTD LTR MaLR -1 395 108 295 278 78 26 chr11 989430 989545 -147793927 - L2 LINE L2 -2 3311 3191 768 126 92 14 chr11 990334 990492 -147792980 - LTR7 LTR ERV1 -232 218 1 2699 35 12 23 chr11 990493 990610 -147792862 + LTR10C LTR ERV1 251 368 -223 3279 57 2 13 chr11 990610 991063 -147792409 + LTR7 LTR ERV1 1 448 -2 2699 35 12 23 chr11 991063 991290 -147792182 + LTR10C LTR ERV1 368 591 0 1010 23 0 8 chr11 991291 991424 -147792048 + Harlequin LTR ERV1 1587 1718 -5178 301 261 159 0 chr11 991424 991512 -147791960 - LTR8 LTR ERV1 -434 257 156 4732 127 33 27 chr11 991516 992336 -147791136 + Harlequin LTR ERV1 2160 2984 -3912 2885 254 9 9 chr11 992398 993157 -147790315 + Harlequin LTR ERV1 3345 5911 -738 255 208 14 14 chr11 993241 993313 -147790159 + Harlequin LTR ERV1 6578 6649 0 3000 100 163 16 chr11 993313 993865 -147789607 + LTR10E LTR ERV1 1 633 0 627 185 86 0 chr11 993866 994017 -147789455 - MLT2B2 LTR ERVL -351 164 1 1327 170 46 18 chr11 994364 994646 -147788826 - MLT1B LTR MaLR -3 387 98 1054 158 0 0 chr11 994648 994813 -147788659 - FRAM SINE Alu 0 166 2 922 106 194 12 chr11 994814 994984 -147788488 - MSTA LTR MaLR 0 428 228 1013 133 46 87 chr11 994985 995180 -147788292 + THE1C LTR MaLR 178 375 0 1871 293 87 15 chr11 995237 995358 -147788114 + HERV16 LTR ERVL 1585 1696 -3300 2081 159 34 3 chr11 995358 995736 -147787736 + MLT1B LTR MaLR 1 390 0 1871 293 87 15 chr11 995736 996335 -147787137 + HERV16 LTR ERVL 1696 2357 -2639 1091 213 17 0 chr11 996374 996602 -147786870 + MLT2B1 LTR ERVL 1 232 -288 1232 119 5 5 chr11 996602 996787 -147786685 - MSTB1 LTR MaLR 0 432 248 704 109 0 27 chr11 998984 999094 -147784378 + U6 snRNA snRNA 1 107 0 8323 116 10 9 chr11 999094 1001261 -147782211 + L1PA11 LINE L1 3979 6153 -21 2920 150 75 25 chr11 1001267 1001703 -147781769 - Tigger3b DNA MER2_type -2440 588 116 2750 99 0 0 chr11 1001703 1002078 -147781394 + THE1C LTR MaLR 1 375 0 2920 150 75 25 chr11 1002078 1002201 -147781271 - Tigger3b DNA MER2_type -2912 116 1 7226 180 69 20 chr11 1002201 1003296 -147780176 + HERV16 LTR ERVL 2185 3372 -2392 1966 135 50 19 chr11 1003296 1003660 -147779812 - THE1C LTR MaLR 0 375 1 7226 180 69 20 chr11 1003660 1004033 -147779439 + HERV16 LTR ERVL 3372 3725 -2039 247 279 0 0 chr11 1004635 1004696 -147778776 + MER89 LTR ERV1 2 62 -497 353 271 92 28 chr11 1004704 1004922 -147778550 + MER89 LTR ERV1 182 413 -146 2383 83 0 3 chr11 1004949 1005249 -147778223 - AluY SINE Alu -12 299 1 5990 201 28 33 chr11 1005268 1005728 -147777744 - L1MB7 LINE L1 -15 6169 5708 2108 126 0 3 chr11 1005728 1006041 -147777431 + AluSx SINE Alu 1 312 0 5990 201 28 33 chr11 1006041 1006107 -147777365 - L1MB7 LINE L1 -476 5708 5643 342 0 0 0 chr11 1006107 1006145 -147777327 + (CA)n Simple_repeat Simple_repeat 2 39 0 5990 201 28 33 chr11 1006145 1006759 -147776713 - L1MB7 LINE L1 -541 5643 5027 2436 106 0 0 chr11 1006759 1007071 -147776401 - AluSx SINE Alu 0 312 1 5990 201 28 33 chr11 1007071 1007270 -147776202 - L1MB7 LINE L1 -1157 5027 4828 812 80 0 0 chr11 1007270 1007382 -147776090 + HY1 scRNA scRNA 1 112 0 5990 201 28 33 chr11 1007382 1008015 -147775457 - L1MB7 LINE L1 -1356 4828 4211 1751 178 36 22 chr11 1008015 1008375 -147775097 - MLT1A1 LTR MaLR 0 365 1 5990 201 28 33 chr11 1008375 1008755 -147774717 - L1MB7 LINE L1 -1973 4211 3830 606 219 41 0 chr11 1008778 1008924 -147774548 + MER89 LTR ERV1 407 558 -1 343 280 64 0 chr11 1010140 1010265 -147773207 + L2 LINE L2 3180 3312 -1 539 286 130 0 chr11 1010731 1010916 -147772556 - MER3 DNA MER1_type 0 209 1 259 143 24 0 chr11 1011835 1011877 -147771595 + LTR7 LTR ERV1 408 450 0 1863 71 0 4 chr11 1011877 1012132 -147771340 - LTR10C LTR ERV1 -337 254 1 3610 167 47 59 chr11 1012132 1013044 -147770428 - LTR10E-int LTR ERV1 -3397 4388 953 1327 197 115 18 chr11 1013025 1013637 -147769835 - LTR10E-int LTR ERV1 -4468 3317 840 * 259 174 22 0 chr11 1013691 1013737 -147769735 - LTR10E-int LTR ERV1 -5628 1021 975 1068 227 56 65 chr11 1013848 1014385 -147769087 - LTR10E-int LTR ERV1 -6335 314 3 2145 111 28 20 chr11 1014403 1014861 -147768611 - LTR10E LTR ERV1 -43 590 72 543 73 0 12 chr11 1015523 1015605 -147767867 - LTR10E LTR ERV1 -549 84 4 244 285 118 44 chr11 1015618 1016050 -147767422 + L1M4 LINE L1 4408 4871 -1275 2178 112 3 0 chr11 1016051 1016360 -147767112 + AluSg SINE Alu 1 310 0 6566 56 17 98 chr11 1017151 1018897 -147764575 - SVA Other Other -683 1386 57 387 41 0 0 chr11 1018897 1018946 -147764526 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 1096 223 121 36 chr11 1018967 1019018 -147764454 + MLT2B1 LTR ERVL 160 205 -315 1880 152 95 24 chr11 1019018 1019438 -147764034 + LTR7 LTR ERV1 1 450 0 1096 223 121 36 chr11 1019438 1019718 -147763754 + MLT2B1 LTR ERVL 205 519 -1 198 311 0 0 chr11 1020110 1020184 -147763288 + L2 LINE L2 1000 1073 -2241 1894 137 0 0 chr11 1020202 1020464 -147763008 - AluSx SINE Alu -10 302 41 265 217 0 0 chr11 1020468 1020514 -147762958 + MSTD LTR MaLR 224 269 -127 332 114 0 0 chr11 1020522 1020566 -147762906 - AluSx SINE Alu -259 44 1 634 224 61 0 chr11 1020577 1020724 -147762748 - MER5A DNA MER1_type -26 163 8 454 222 42 76 chr11 1020870 1021014 -147762458 - MLT1J2 LTR MaLR -292 158 20 251 234 16 31 chr11 1021403 1021467 -147762005 - MLT1I LTR MaLR 0 409 347 1021 207 138 45 chr11 1021959 1022293 -147761179 + MLT1A1 LTR MaLR 1 365 0 4127 244 62 37 chr11 1022293 1022867 -147760605 + MLT1A1-int LTR MaLR 1 559 -1176 1502 57 0 0 chr11 1022867 1023061 -147760411 + L1PA3 LINE L1 5962 6155 0 4127 244 62 37 chr11 1023061 1023685 -147759787 + MLT1A1-int LTR MaLR 559 1229 -506 524 236 0 0 chr11 1023840 1023946 -147759526 + MLT2B1 LTR ERVL 365 470 -50 465 371 36 15 chr11 1024151 1024488 -147758984 + HERVL LTR ERVL 3926 4269 -1385 2613 165 14 45 chr11 1025521 1026036 -147757436 - MLT2B3 LTR ERVL -1 553 55 612 81 0 0 chr11 1026037 1026121 -147757351 + MLT2B3 LTR ERVL 1 84 -470 1418 130 80 58 chr11 1026121 1026497 -147756975 + MSTA LTR MaLR 1 401 -27 1704 168 47 0 chr11 1026497 1026880 -147756592 - AluSx SINE Alu 0 397 1 235 175 0 0 chr11 1026881 1026921 -147756551 + MSTA LTR MaLR 389 428 0 9404 169 11 9 chr11 1026921 1028563 -147754909 + MSTB-int LTR MaLR 1 1645 -6 1990 153 112 5 chr11 1028568 1028953 -147754519 + MSTB LTR MaLR 1 426 0 344 137 0 0 chr11 1028953 1029004 -147754468 + MLT2B3 LTR ERVL 80 130 -424 791 209 133 58 chr11 1029004 1029402 -147754070 - MSTC LTR MaLR 0 428 1 6025 231 65 45 chr11 1029402 1030887 -147752585 - MSTC-int LTR MaLR 0 1735 212 2534 57 0 0 chr11 1030887 1031183 -147752289 - AluY SINE Alu -15 296 1 6025 231 65 45 chr11 1031183 1031380 -147752092 - MSTC-int LTR MaLR -1523 212 20 532 250 57 21 chr11 1031399 1031591 -147751881 - MLT1A1 LTR MaLR 0 365 167 644 197 7 82 chr11 1031594 1031774 -147751698 - MLT1A1 LTR MaLR -171 194 31 2002 113 48 14 chr11 1031774 1032065 -147751407 + AluSx SINE Alu 1 301 -11 644 197 7 82 chr11 1032065 1032094 -147751378 - MLT1A1 LTR MaLR -334 31 1 * 1720 186 32 74 chr11 1032094 1032497 -147750975 + MLT2B3 LTR ERVL 130 515 -39 2475 84 0 3 chr11 1032524 1032833 -147750639 - AluSc SINE Alu -1 308 1 18483 197 41 34 chr11 1032887 1034199 -147749273 + ERVL LTR ERVL 3 1304 -4460 3413 131 9 6 chr11 1034199 1034724 -147748748 + MER1A DNA MER1_type 1 527 0 18483 197 41 34 chr11 1034724 1036681 -147746791 + ERVL LTR ERVL 1304 3245 -2519 2061 111 3 0 chr11 1036681 1036970 -147746502 + AluSx SINE Alu 23 312 0 18483 197 41 34 chr11 1036970 1038813 -147744659 + ERVL LTR ERVL 3245 5181 -583 2470 58 0 3 chr11 1038813 1039121 -147744351 + AluY SINE Alu 1 307 -4 18483 197 41 34 chr11 1039121 1039703 -147743769 + ERVL LTR ERVL 5181 5757 -7 1065 128 20 10 chr11 1039703 1039898 -147743574 + MLT2B3 LTR ERVL 1 197 -357 269 217 0 26 chr11 1039998 1040113 -147743359 + G-rich Low_complexity Low_complexity 1 112 0 509 213 19 0 chr11 1043816 1043924 -147739548 - L1MA10 LINE L1 -2 6332 6223 1266 269 43 38 chr11 1044328 1044928 -147738544 - L1ME2 LINE L1 -311 5853 5254 303 316 26 8 chr11 1045814 1045931 -147737541 - MIR SINE MIR -98 164 46 1092 132 0 0 chr11 1046676 1046835 -147736637 - FRAM SINE Alu -17 159 1 181 264 38 0 chr11 1047934 1047987 -147735485 - L2 LINE L2 -29 3243 3189 537 256 62 17 chr11 1048609 1048785 -147734687 + MER53 DNA DNA 6 189 0 210 125 16 31 chr11 1049691 1049755 -147733717 + GA-rich Low_complexity Low_complexity 3 65 0 3844 147 165 23 chr11 1056164 1056778 -147726694 - MER4D LTR ERV1 0 903 151 1666 140 57 18 chr11 1056778 1057057 -147726415 - AluSq SINE Alu -18 295 6 3844 147 165 23 chr11 1057057 1057231 -147726241 - MER4D LTR ERV1 -752 151 3 277 250 75 67 chr11 1059908 1060028 -147723444 + MIR SINE MIR 23 143 -65 234 237 17 0 chr11 1066657 1066716 -147716756 - MER81 DNA DNA -2 112 53 180 219 49 0 chr11 1068923 1068964 -147714508 - L2 LINE L2 -2 3311 3269 205 241 24 48 chr11 1070420 1070503 -147712969 - MIR SINE MIR -86 122 42 957 177 6 0 chr11 1070522 1070686 -147712786 - AluJb SINE Alu -8 304 140 25 31 0 0 chr11 1073299 1073331 -147710141 + GC_rich Low_complexity Low_complexity 1 32 0 922 253 139 21 chr11 1075464 1075796 -147707676 + L1MB7 LINE L1 5748 6118 -66 2238 87 0 13 chr11 1075800 1076109 -147707363 + AluY SINE Alu 7 311 0 2003 114 0 48 chr11 1077950 1078265 -147705207 + AluSx SINE Alu 1 300 -12 182 228 101 51 chr11 1079962 1080041 -147703431 - MIR SINE MIR -74 134 52 213 281 56 0 chr11 1081182 1081271 -147702201 + MIR3 SINE MIR 62 155 -53 799 216 104 78 chr11 1083034 1083418 -147700054 + MLT1C LTR MaLR 35 428 -39 657 271 140 17 chr11 1083790 1084148 -147699324 - MLT1C LTR MaLR -7 460 59 294 303 67 0 chr11 1085265 1085384 -147698088 + MIR SINE MIR 23 149 -59 209 307 183 7 chr11 1086688 1086841 -147696631 + MIR SINE MIR 13 192 -70 537 230 0 0 chr11 1087063 1087215 -147696257 + (TGG)n Simple_repeat Simple_repeat 2 153 0 278 244 0 26 chr11 1087251 1087366 -147696106 + (ATGGTG)n Simple_repeat Simple_repeat 2 113 0 605 216 0 6 chr11 1087383 1087564 -147695908 + (TGG)n Simple_repeat Simple_repeat 1 180 0 300 296 12 0 chr11 1087564 1087645 -147695827 + (ATGGTG)n Simple_repeat Simple_repeat 5 86 0 757 180 6 6 chr11 1087646 1087824 -147695648 + (TGG)n Simple_repeat Simple_repeat 3 180 0 498 192 6 34 chr11 1087870 1088208 -147695264 + (ATGGTG)n Simple_repeat Simple_repeat 1 328 0 375 169 0 56 chr11 1088235 1088377 -147695095 + (ATGGTG)n Simple_repeat Simple_repeat 1 134 0 946 130 120 29 chr11 1088388 1088596 -147694876 + THE1C LTR MaLR 1 227 -148 237 311 27 54 chr11 1088720 1088868 -147694604 + L2 LINE L2 2711 2854 -460 744 127 19 45 chr11 1088902 1089064 -147694408 + THE1C LTR MaLR 195 435 -22 906 173 0 6 chr11 1089075 1089576 -147693896 + (TGG)n Simple_repeat Simple_repeat 1 497 0 438 350 147 3 chr11 1090260 1090600 -147692872 + L2 LINE L2 2925 3313 0 370 212 6 71 chr11 1092365 1092896 -147690576 + (TG)n Simple_repeat Simple_repeat 1 496 0 199 187 0 27 chr11 1092960 1093035 -147690437 + (TG)n Simple_repeat Simple_repeat 2 74 0 323 194 0 58 chr11 1093068 1093259 -147690213 + (TG)n Simple_repeat Simple_repeat 1 180 0 202 56 19 93 chr11 1093314 1093368 -147690104 + (TG)n Simple_repeat Simple_repeat 1 50 0 762 176 7 22 chr11 1093588 1093724 -147689748 - AluJo SINE Alu -178 134 1 271 182 55 0 chr11 1093729 1093784 -147689688 - L2 LINE L2 -15 3257 3200 223 220 0 37 chr11 1093978 1094087 -147689385 + (CCCA)n Simple_repeat Simple_repeat 2 106 0 882 206 0 0 chr11 1094114 1094430 -147689042 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 1773 185 15 10 chr11 1096534 1096929 -147686543 + L1 LINE L1 3709 4105 -2041 5638 120 21 15 chr11 1096932 1097007 -147686465 + L1PA16 LINE L1 4404 4477 -1689 1897 157 0 7 chr11 1097007 1097300 -147686172 + AluJb SINE Alu 1 291 -21 5638 120 21 15 chr11 1097300 1098954 -147684518 + L1PA16 LINE L1 4477 6150 -16 214 274 32 0 chr11 1099307 1099369 -147684103 + L2 LINE L2 3195 3258 -14 198 71 0 0 chr11 1099372 1099400 -147684072 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 184 232 36 0 chr11 1100249 1100305 -147683167 - L3 LINE CR1 -932 645 588 2157 109 3 0 chr11 1100320 1100613 -147682859 - AluSq SINE Alu -19 294 1 265 232 66 60 chr11 1100661 1100812 -147682660 - L1MC5 LINE L1 -933 7028 6877 405 0 0 0 chr11 1101001 1101046 -147682426 + (CA)n Simple_repeat Simple_repeat 2 46 0 487 289 58 0 chr11 1101091 1101299 -147682173 - L1MC5 LINE L1 -2004 5804 5585 826 261 46 25 chr11 1101303 1101587 -147681885 - L1MC5 LINE L1 -2264 5544 5255 589 327 121 32 chr11 1101588 1101934 -147681538 - L1MC5 LINE L1 -893 5253 4877 284 333 23 11 chr11 1103132 1103306 -147680166 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 327 85 0 0 chr11 1103341 1103388 -147680084 + (CGGGGG)n Simple_repeat Simple_repeat 4 50 0 218 260 16 31 chr11 1103405 1103532 -147679940 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 34 55 0 0 chr11 1103571 1103626 -147679846 + GC_rich Low_complexity Low_complexity 1 55 0 33 94 0 0 chr11 1103849 1103945 -147679527 + GC_rich Low_complexity Low_complexity 1 96 0 1721 149 30 7 chr11 1109766 1110062 -147673410 - MER1B DNA MER1_type 0 339 37 391 395 60 10 chr11 1111310 1111620 -147671852 + L1MC4a LINE L1 4711 5043 -1103 2347 81 3 0 chr11 1111717 1112014 -147671458 + AluSp SINE Alu 1 298 -15 353 351 162 16 chr11 1112073 1112264 -147671208 + L1MC4a LINE L1 5255 5473 -2335 546 295 153 3 chr11 1112272 1112560 -147670912 + L1MC4a LINE L1 5532 5862 -1946 739 209 0 0 chr11 1112560 1112694 -147670778 - FLAM_C SINE Alu -8 135 2 463 320 112 44 chr11 1112698 1113082 -147670390 + L1MC4a LINE L1 5858 6267 -1541 5169 181 42 39 chr11 1113258 1113726 -147669746 + L1PA16 LINE L1 3850 4315 -1851 2326 71 3 3 chr11 1113726 1114022 -147669450 - AluY SINE Alu -15 296 1 5169 181 42 39 chr11 1114022 1114683 -147668789 + L1PA16 LINE L1 4315 4972 -1194 1671 116 167 0 chr11 1114683 1114941 -147668531 + AluSq SINE Alu 1 301 -2 5169 181 42 39 chr11 1114941 1115265 -147668207 + L1PA16 LINE L1 4972 5293 -873 2414 49 0 55 chr11 1115265 1115591 -147667881 + AluY SINE Alu 1 308 -3 5169 181 42 39 chr11 1115591 1116419 -147667053 + L1PA16 LINE L1 5293 6161 -5 824 300 79 75 chr11 1116496 1117259 -147666213 + L1MC5 LINE L1 6555 7339 -622 483 33 0 0 chr11 1117259 1117320 -147666152 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 824 300 79 75 chr11 1117320 1117548 -147665924 + L1MC5 LINE L1 7339 7564 -397 258 32 0 0 chr11 1119109 1119140 -147664332 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 379 335 12 12 chr11 1120353 1120523 -147662949 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 186 43 0 0 chr11 1122223 1122246 -147661226 + (CTGGGG)n Simple_repeat Simple_repeat 6 28 0 32 67 0 0 chr11 1122944 1123004 -147660468 + AT_rich Low_complexity Low_complexity 1 60 0 689 148 9 0 chr11 1123779 1123887 -147659585 - FRAM SINE Alu -6 170 62 243 246 35 0 chr11 1124133 1124190 -147659282 - MIR SINE MIR -86 122 64 301 250 27 0 chr11 1124827 1124916 -147658556 - MIR3 SINE MIR -51 157 63 265 284 27 0 chr11 1125393 1125467 -147658005 + MIR SINE MIR 96 171 -91 234 258 65 0 chr11 1126624 1126686 -147656786 + MIR SINE MIR 111 176 -86 1940 131 0 3 chr11 1126772 1127055 -147656417 - AluJo SINE Alu -13 299 18 1245 278 120 48 chr11 1127076 1127889 -147655583 - L1ME1 LINE L1 -5 6161 5276 2043 111 3 19 chr11 1127889 1128196 -147655276 - AluSg SINE Alu -8 302 1 1245 278 120 48 chr11 1128196 1128295 -147655177 - L1ME1 LINE L1 -890 5276 5186 2254 56 45 0 chr11 1128299 1128585 -147654887 - AluY SINE Alu -12 299 1 1091 174 10 0 chr11 1128597 1128793 -147654679 - AluJo SINE Alu -21 291 94 2515 172 61 33 chr11 1128793 1129368 -147654104 - LTR59 LTR ERV1 -6 591 1 309 155 0 0 chr11 1129368 1129426 -147654046 - AluJo SINE Alu -205 97 40 778 252 91 7 chr11 1129426 1129712 -147653760 - L1ME1 LINE L1 -952 5194 4885 495 269 0 0 chr11 1130186 1130506 -147652966 + (TG)n Simple_repeat Simple_repeat 1 320 0 384 283 3 0 chr11 1130553 1130873 -147652599 + (TG)n Simple_repeat Simple_repeat 1 321 0 446 247 6 0 chr11 1130888 1131066 -147652406 + (TG)n Simple_repeat Simple_repeat 1 179 0 181 367 20 10 chr11 1132104 1132202 -147651270 + L2 LINE L2 3150 3248 -24 239 186 314 0 chr11 1133504 1133590 -147649882 - MIR SINE MIR -119 143 31 1072 290 51 0 chr11 1133619 1133991 -147649481 - L1MB7 LINE L1 -18 6166 5776 307 318 99 13 chr11 1134020 1134171 -147649301 + L1MEc LINE L1 2270 2433 -3963 2059 131 68 37 chr11 1134275 1134627 -147648845 + THE1B LTR MaLR 1 363 -1 403 362 69 20 chr11 1134701 1134947 -147648525 + L1MEc LINE L1 2659 2916 -3299 1913 150 0 7 chr11 1135314 1135614 -147647858 - AluSx SINE Alu -14 298 1 318 228 79 50 chr11 1136137 1136238 -147647234 + L1MEc LINE L1 3754 3857 -2358 785 142 45 52 chr11 1136242 1136376 -147647096 + FLAM_C SINE Alu 1 133 0 242 269 84 34 chr11 1136398 1136517 -147646955 + L1MC4 LINE L1 7006 7130 -912 1001 286 74 70 chr11 1136580 1136951 -147646521 + L1MC4 LINE L1 7269 7637 -405 2288 126 5 27 chr11 1136951 1137323 -147646149 - THE1B LTR MaLR 0 364 1 11502 86 5 0 chr11 1137323 1138896 -147644576 - THE1B-int LTR MaLR 0 1580 1 2471 102 5 30 chr11 1138896 1139269 -147644203 - THE1B LTR MaLR 0 364 1 1001 286 74 70 chr11 1139269 1139650 -147643822 + L1MC4 LINE L1 7636 8026 -16 309 250 188 0 chr11 1139842 1139970 -147643502 - L1ME4a LINE L1 -3 6118 5967 3576 126 2 0 chr11 1140117 1140641 -147642831 + MER1A DNA MER1_type 1 525 -2 369 259 12 0 chr11 1140666 1140751 -147642721 + MIR SINE MIR 112 197 -65 225 94 0 0 chr11 1140812 1140844 -147642628 + (TG)n Simple_repeat Simple_repeat 1 32 0 481 331 68 11 chr11 1140975 1141241 -147642231 - L1ME4a LINE L1 -303 5818 5538 367 351 4 30 chr11 1141671 1141902 -147641570 - L2 LINE L2 -280 3033 2809 4363 279 58 40 chr11 1141923 1142779 -147640693 - L1MC2 LINE L1 -1 7807 6967 2243 122 6 3 chr11 1142779 1143090 -147640382 - AluSx SINE Alu 0 312 1 4363 279 58 40 chr11 1143090 1144142 -147639330 - L1MC2 LINE L1 -841 6967 5885 * 9452 193 39 17 chr11 1144138 1145173 -147638299 - L1MB2 LINE L1 -2 6169 5158 2093 135 133 3 chr11 1145173 1145550 -147637922 - MSTB LTR MaLR 0 426 1 9452 193 39 17 chr11 1145550 1147603 -147635869 - L1MB2 LINE L1 -1013 5158 3013 * 18143 128 79 12 chr11 1147599 1149309 -147634163 + L1MA3 LINE L1 10 1604 -5961 2248 108 30 0 chr11 1149309 1149483 -147633989 - AluSp SINE Alu -8 305 117 243 0 0 0 chr11 1149483 1149510 -147633962 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2248 108 30 0 chr11 1149510 1149631 -147633841 - AluSp SINE Alu -196 117 1 18143 128 79 12 chr11 1149631 1150988 -147632484 + L1MA3 LINE L1 1604 3283 -4282 * 28604 110 15 23 chr11 1150977 1154779 -147628693 - L1PA8 LINE L1 -7 6480 2739 2395 97 0 3 chr11 1154779 1155088 -147628384 + AluY SINE Alu 1 308 -3 28604 110 15 23 chr11 1155088 1157799 -147625673 - L1PA8 LINE L1 -3748 2739 6 2136 170 150 33 chr11 1157802 1158786 -147624686 + L1MA3 LINE L1 3258 4395 -3170 343 71 18 0 chr11 1158784 1158840 -147624632 - L1P LINE L1 -1642 4504 4448 * 6284 52 1 1 chr11 1158836 1159639 -147623833 + L1PA7 LINE L1 5330 6132 -22 * 12269 152 20 11 chr11 1159630 1162019 -147621453 + L1MA3 LINE L1 4371 6737 -987 2518 26 0 3 chr11 1162019 1162329 -147621143 + L1PA4 LINE L1 5847 6155 0 12269 152 20 11 chr11 1162329 1163099 -147620373 + L1MA3 LINE L1 6737 7567 -157 1890 163 7 3 chr11 1163099 1163399 -147620073 + AluSx SINE Alu 1 301 -11 12269 152 20 11 chr11 1163399 1163559 -147619913 + L1MA3 LINE L1 7567 7724 0 2039 257 38 36 chr11 1163576 1163682 -147619790 - L1M4 LINE L1 -3137 3009 2905 1082 130 12 0 chr11 1163682 1163851 -147619621 - L1PA10 LINE L1 0 6168 5998 2039 257 38 36 chr11 1163851 1164612 -147618860 - L1M4 LINE L1 -3241 2905 2140 561 202 0 28 chr11 1164595 1164741 -147618731 + L1M1 LINE L1 5588 5724 -499 * 599 237 149 0 chr11 1164738 1164932 -147618540 - L1M4 LINE L1 -1029 5117 4895 843 274 68 12 chr11 1164949 1165584 -147617888 - L1MC4a LINE L1 -585 5657 5261 290 353 35 0 chr11 1165603 1165864 -147617608 - L1MC4a LINE L1 -914 5232 4963 333 279 141 25 chr11 1166086 1166369 -147617103 - L2 LINE L2 -789 2525 2210 1904 149 0 44 chr11 1168616 1168937 -147614535 + AluJo SINE Alu 4 310 -2 1801 160 3 30 chr11 1168945 1169245 -147614227 + AluJo SINE Alu 5 296 -16 223 298 11 11 chr11 1169499 1169593 -147613879 + L2 LINE L2 2911 3004 -309 277 356 40 6 chr11 1171037 1171211 -147612261 + MLT1J LTR MaLR 22 201 -310 2422 40 18 0 chr11 1173179 1173456 -147610016 + AluY SINE Alu 5 286 -25 1275 214 50 15 chr11 1173652 1174000 -147609472 - L1PA16 LINE L1 -1 6165 5808 297 269 66 7 chr11 1174790 1174930 -147608542 + MIR SINE MIR 39 188 -68 307 163 0 0 chr11 1175313 1175362 -147608110 + MER58A DNA MER1_type 40 88 -19 977 198 0 0 chr11 1178099 1178289 -147605183 + AluJb SINE Alu 137 312 0 308 253 147 7 chr11 1178423 1178573 -147604899 + MLT1D LTR MaLR 45 215 -290 829 193 86 6 chr11 1179675 1179881 -147603591 - L1MB3 LINE L1 0 6183 5974 2254 90 0 37 chr11 1181802 1182125 -147601347 - AluSx SINE Alu -1 311 1 180 0 0 0 chr11 1182377 1182397 -147601075 + (T)n Simple_repeat Simple_repeat 1 20 0 644 262 63 9 chr11 1182597 1182818 -147600654 + MLT1D LTR MaLR 8 240 -265 608 303 127 17 chr11 1186028 1186431 -147597041 - L1MB7 LINE L1 0 6184 5738 384 390 47 36 chr11 1187667 1188029 -147595443 - L1MB7 LINE L1 -1167 4979 4614 304 272 76 0 chr11 1188605 1188697 -147594775 - L1MB7 LINE L1 -2322 3824 3726 255 347 8 8 chr11 1189148 1189269 -147594203 + (TG)n Simple_repeat Simple_repeat 1 121 0 365 331 11 22 chr11 1189319 1189500 -147593972 + (TG)n Simple_repeat Simple_repeat 2 180 0 188 326 264 4 chr11 1190425 1190686 -147592786 + L2 LINE L2 2635 2963 -351 356 354 17 17 chr11 1192098 1192276 -147591196 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 268 226 0 0 chr11 1193433 1193486 -147589986 - L2 LINE L2 0 3313 3261 1029 213 16 56 chr11 1195375 1195774 -147587698 - MLT1C LTR MaLR -15 375 18 594 266 85 0 chr11 1195774 1195973 -147587499 + MER58A DNA MER1_type 1 216 -8 1751 174 9 22 chr11 1196326 1196642 -147586830 - AluJb SINE Alu 0 312 1 237 304 22 0 chr11 1196649 1196741 -147586731 - L1MC4 LINE L1 -141 7901 7808 199 205 0 0 chr11 1198906 1198945 -147584527 + L2 LINE L2 2748 2786 -528 220 399 14 14 chr11 1199603 1199746 -147583726 + (CACG)n Simple_repeat Simple_repeat 3 145 0 302 300 0 11 chr11 1200763 1200853 -147582619 + MIR SINE MIR 96 184 -78 2256 268 75 58 chr11 1201088 1201910 -147581562 - L1ME1 LINE L1 -5 6161 5354 1741 165 7 3 chr11 1201910 1202207 -147581265 - AluJo SINE Alu -14 298 1 2256 268 75 58 chr11 1202207 1204078 -147579394 - L1ME1 LINE L1 -812 5354 3452 2710 232 83 60 chr11 1204306 1205283 -147578189 - L1ME1 LINE L1 -2671 3475 2497 399 100 11 89 chr11 1205283 1205373 -147578099 - L1MA5 LINE L1 -1 6299 6217 2710 232 83 60 chr11 1205373 1205733 -147577739 - L1ME1 LINE L1 -3649 2497 2147 1966 134 0 13 chr11 1205837 1206143 -147577329 - AluSx SINE Alu -10 302 1 387 304 144 22 chr11 1206360 1206772 -147576700 - L2 LINE L2 -204 3109 2634 3415 226 49 115 chr11 1209720 1212280 -147571192 - L1ME1 LINE L1 -5 6161 3434 207 0 0 0 chr11 1212280 1212303 -147571169 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3415 226 49 115 chr11 1212303 1212318 -147571154 - L1ME1 LINE L1 -2732 3434 3420 2252 94 0 13 chr11 1212318 1212625 -147570847 - AluSq SINE Alu -10 303 1 3415 226 49 115 chr11 1212625 1212999 -147570473 - L1ME1 LINE L1 -2746 3420 3398 1184 192 108 26 chr11 1214633 1214977 -147568495 - MLT1C LTR MaLR -88 379 8 866 247 49 45 chr11 1215013 1215236 -147568236 + MER58A DNA MER1_type 1 224 0 392 352 102 22 chr11 1215708 1216023 -147567449 + L1M4 LINE L1 2267 2606 -3540 395 308 35 0 chr11 1216082 1216225 -147567247 - MLT1G1 LTR MaLR 0 595 448 254 298 61 35 chr11 1216508 1216706 -147566766 + L1M4 LINE L1 2704 2906 -3240 2401 41 7 3 chr11 1219544 1219839 -147563633 + AluY SINE Alu 16 311 0 364 295 27 0 chr11 1220113 1220225 -147563247 - MIR SINE MIR -71 191 77 205 156 0 0 chr11 1220818 1220850 -147562622 + G-rich Low_complexity Low_complexity 2 33 0 530 205 12 187 chr11 1222698 1222864 -147560608 - L1MB5 LINE L1 -16 6155 6019 2201 239 79 14 chr11 1222893 1222921 -147560551 - L1MB3 LINE L1 0 6183 6158 2161 101 3 7 chr11 1222921 1223218 -147560254 + AluSx SINE Alu 1 296 -16 2201 239 79 14 chr11 1223218 1223751 -147559721 - L1MB3 LINE L1 -25 6158 5570 402 86 35 0 chr11 1223751 1223809 -147559663 - L1MC1 LINE L1 -2 6331 6272 2201 239 79 14 chr11 1223809 1223907 -147559565 - L1MB3 LINE L1 -613 5570 5480 272 323 114 30 chr11 1224306 1224473 -147558999 + L2 LINE L2 3119 3299 -14 822 287 42 51 chr11 1224699 1225148 -147558324 + L1M4 LINE L1 3661 4105 -2041 560 224 8 0 chr11 1225240 1225374 -147558098 - Charlie1 DNA MER1_type -4 2757 2623 * 620 218 198 0 chr11 1225358 1225560 -147557912 - Charlie1 DNA MER1_type -2519 242 1 369 369 88 17 chr11 1225654 1226460 -147557012 + L1M4 LINE L1 4308 5170 -976 275 186 29 14 chr11 1226481 1226551 -147556921 + Charlie1 DNA MER1_type 68 138 -2623 383 328 90 16 chr11 1226678 1226934 -147556538 + L1M4 LINE L1 5370 5644 -534 370 316 208 17 chr11 1227429 1227922 -147555550 + L2 LINE L2 2718 3306 -7 927 227 58 5 chr11 1228032 1228239 -147555233 - MER20 DNA MER1_type 0 219 2 200 391 40 59 chr11 1229743 1229996 -147553476 - L2 LINE L2 0 3272 3025 425 317 218 20 chr11 1230075 1230677 -147552795 - L2 LINE L2 -559 2755 2035 281 302 123 34 chr11 1232220 1232399 -147551073 - MIR SINE MIR -66 196 2 183 244 0 24 chr11 1239669 1239710 -147543762 + MIR SINE MIR 111 150 -58 360 0 0 0 chr11 1240041 1240081 -147543391 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 251 317 85 75 chr11 1240083 1240389 -147543083 - L2 LINE L2 -14 3258 2950 310 316 147 11 chr11 1240440 1240617 -147542855 + MIR SINE MIR 62 262 0 2066 167 30 8 chr11 1241663 1242065 -147541407 + L1MD1 LINE L1 5832 6242 0 24 0 0 0 chr11 1242330 1242354 -147541118 + AT_rich Low_complexity Low_complexity 1 24 0 2014 138 7 0 chr11 1242364 1242669 -147540803 + AluSx SINE Alu 1 307 -5 788 265 103 0 chr11 1243063 1243267 -147540205 - MIR SINE MIR -27 235 11 629 359 84 15 chr11 1243977 1244454 -147539018 + L1MC4a LINE L1 4742 5251 -895 659 263 115 7 chr11 1244496 1244766 -147538706 + L1MC4a LINE L1 5326 5624 -2184 264 271 119 25 chr11 1245512 1245630 -147537842 + L1MC4a LINE L1 5738 5866 -1942 269 222 0 0 chr11 1246384 1246438 -147537034 + L1MC4a LINE L1 5879 5932 -1876 243 0 0 0 chr11 1247696 1247723 -147535749 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1248130 1248171 -147535301 + (CACG)n Simple_repeat Simple_repeat 3 43 0 329 267 60 26 chr11 1249806 1249922 -147533550 + MIR SINE MIR 16 135 -73 330 263 135 23 chr11 1251943 1252076 -147531396 + MIR3 SINE MIR 33 180 -28 198 290 40 81 chr11 1252046 1252170 -147531302 + L2 LINE L2 3146 3264 -8 * 270 259 129 0 chr11 1252864 1252949 -147530523 - MIR SINE MIR -80 182 87 226 297 62 28 chr11 1253043 1253188 -147530284 + L1ME3A LINE L1 4416 4565 -1581 1058 311 30 20 chr11 1253317 1253821 -147529651 + L1ME3A LINE L1 4725 5233 -913 1825 279 100 17 chr11 1253876 1254715 -147528757 + L1ME3A LINE L1 5260 6168 -2 199 356 22 30 chr11 1255299 1255434 -147528038 - MIR3 SINE MIR -72 136 3 256 271 143 97 chr11 1261701 1262073 -147521399 - L1MC/D LINE L1 -746 5400 5209 2146 234 94 11 chr11 1262329 1263278 -147520194 + L1MB5 LINE L1 4975 5996 -178 * 6918 188 166 74 chr11 1262671 1264398 -147519074 + L1MD3 LINE L1 5367 7491 -504 562 178 16 47 chr11 1264398 1264527 -147518945 + MLT1F1 LTR MaLR 1 125 -442 6918 188 166 74 chr11 1264527 1265052 -147518420 + L1MD3 LINE L1 7491 7966 -29 1324 257 138 37 chr11 1265065 1266030 -147517442 + L1ME LINE L1 4370 5432 -730 206 227 186 72 chr11 1266232 1266329 -147517143 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1267434 1267455 -147516017 + AT_rich Low_complexity Low_complexity 1 21 0 304 162 212 50 chr11 1267459 1267558 -147515914 + L1ME4a LINE L1 5961 6075 -46 853 253 98 105 chr11 1268573 1269154 -147514318 + MLT1K LTR MaLR 2 578 -10 187 261 250 0 chr11 1270917 1271005 -147512467 - L2 LINE L2 -10 3262 3153 331 288 140 39 chr11 1271009 1271238 -147512234 + LTR16C LTR ERVL 42 293 -198 589 316 90 17 chr11 1271333 1271621 -147511851 - L2 LINE L2 -555 2759 2451 9329 184 65 40 chr11 1271953 1274331 -147509141 + L1MA5 LINE L1 1418 3734 -3114 1410 169 48 11 chr11 1274331 1274603 -147508869 - AluJb SINE Alu -30 282 1 9329 184 65 40 chr11 1274603 1275723 -147507749 + L1MA5 LINE L1 3734 5026 -1822 1431 191 38 0 chr11 1275723 1275990 -147507482 + AluJb SINE Alu 5 281 -31 9329 184 65 40 chr11 1275990 1276283 -147507189 + L1MA5 LINE L1 5026 5310 -1538 * 12252 206 40 13 chr11 1276282 1280053 -147503419 + L1MA4A LINE L1 1 4045 -2803 5270 153 72 9 chr11 1280049 1281967 -147501505 + L1MA4A LINE L1 4959 7005 0 * 1097 202 0 0 chr11 1281976 1282179 -147501293 + AluJo SINE Alu 27 229 -83 43056 54 4 9 chr11 1282180 1288361 -147495111 + L1PA5 LINE L1 2 6149 -5 664 175 0 14 chr11 1288396 1288539 -147494933 + L1MA5 LINE L1 5302 5442 -1406 1036 257 13 13 chr11 1288539 1288765 -147494707 - MER8 DNA MER2_type 0 239 14 3267 164 83 6 chr11 1288765 1289851 -147493621 + L1MA5 LINE L1 5449 6602 -400 937 127 24 24 chr11 1289851 1290012 -147493460 + L1MA5 LINE L1 6838 7002 0 1192 197 86 37 chr11 1290012 1290328 -147493144 + L1MB3 LINE L1 3980 4324 -1822 2434 85 0 3 chr11 1290328 1290635 -147492837 - AluY SINE Alu -5 306 1 1192 197 86 37 chr11 1290635 1290705 -147492767 + L1MB3 LINE L1 4324 4389 -1757 307 333 16 32 chr11 1290723 1290849 -147492623 + L1MA9 LINE L1 2154 2277 -5289 2782 267 42 24 chr11 1290851 1292055 -147491417 + L1MA9 LINE L1 2096 3404 -4162 5038 186 53 67 chr11 1292063 1294490 -147488982 + L1MA9 LINE L1 5006 7149 -582 1699 179 3 7 chr11 1294490 1294786 -147488686 + AluJo SINE Alu 6 300 -12 5038 186 53 67 chr11 1294786 1295361 -147488111 + L1MA9 LINE L1 7149 7731 0 3055 193 46 102 chr11 1295357 1295709 -147487763 + L1MB3 LINE L1 4389 4759 -1421 * 1517 221 10 0 chr11 1295709 1296003 -147487469 + AluJb SINE Alu 1 297 -15 3055 193 46 102 chr11 1296003 1296668 -147486804 + L1MB3 LINE L1 4759 5329 -851 2285 79 24 0 chr11 1296668 1296958 -147486514 + AluY SINE Alu 1 297 -14 3055 193 46 102 chr11 1296958 1297093 -147486379 + L1MB3 LINE L1 5329 5470 -710 809 225 6 50 chr11 1297093 1297275 -147486197 + AluJb SINE Alu 116 289 -23 3803 168 23 12 chr11 1297283 1297975 -147485497 + L1MB3 LINE L1 5480 6179 -4 2022 185 14 24 chr11 1297995 1298690 -147484782 + L1M1 LINE L1 5029 5677 -625 4470 142 13 38 chr11 1298697 1299210 -147484262 + L1MC1 LINE L1 5586 6075 -258 2034 110 190 19 chr11 1299210 1299574 -147483898 - MSTA LTR MaLR -2 426 1 4470 142 13 38 chr11 1299574 1299826 -147483646 + L1MC1 LINE L1 6075 6332 -1 1272 226 51 17 chr11 1299831 1300410 -147483062 + L1MC4a LINE L1 2213 2810 -3572 * 9286 193 68 30 chr11 1300408 1300986 -147482486 + L1MA9 LINE L1 3127 3681 -2867 5611 115 21 53 chr11 1300986 1301259 -147482213 + L1PA16 LINE L1 5151 5431 -735 2212 121 0 3 chr11 1301259 1301613 -147481859 + AluSx SINE Alu 1 312 0 5611 115 21 53 chr11 1301613 1302021 -147481451 + L1PA16 LINE L1 5431 5791 -375 2400 86 3 0 chr11 1302021 1302325 -147481147 + AluSp SINE Alu 1 305 -8 5611 115 21 53 chr11 1302325 1302684 -147480788 + L1PA16 LINE L1 5791 6160 -6 9286 193 68 30 chr11 1302684 1304117 -147479355 + L1MA9 LINE L1 3681 5058 -1490 1332 118 81 5 chr11 1304117 1304328 -147479144 - MER30 DNA MER1_type -3 227 1 9286 193 68 30 chr11 1304328 1305527 -147477945 + L1MA9 LINE L1 5058 6466 -82 26 0 0 0 chr11 1305547 1305573 -147477899 + AT_rich Low_complexity Low_complexity 1 26 0 7908 219 53 47 chr11 1305589 1308115 -147475357 + L1MC4a LINE L1 2811 5351 -1031 363 132 0 0 chr11 1308110 1308163 -147475309 + L1MB5 LINE L1 6084 6136 -38 * 1207 251 126 10 chr11 1308444 1308858 -147474614 + L1MC4a LINE L1 5964 6425 -1619 2133 230 61 96 chr11 1309249 1310137 -147473335 + L1M4 LINE L1 649 1505 -5037 1957 134 124 0 chr11 1310142 1310441 -147473031 - MER1B DNA MER1_type -1 336 1 1287 216 37 67 chr11 1310671 1311025 -147472447 + L1M4 LINE L1 2529 2814 -3830 2051 141 27 0 chr11 1311025 1311324 -147472148 + AluSx SINE Alu 1 307 -5 1287 216 37 67 chr11 1311324 1311539 -147471933 + L1M4 LINE L1 2814 3034 -3610 299 177 0 51 chr11 1311566 1311645 -147471827 - L1M4 LINE L1 -3549 2597 2523 7395 236 40 98 chr11 1311712 1313748 -147469724 + L1MB8 LINE L1 1503 3656 -2591 1339 172 51 99 chr11 1313748 1314062 -147469410 + AluJo SINE Alu 1 299 -3 7395 236 40 98 chr11 1314062 1314827 -147468645 + L1MB8 LINE L1 3656 4464 -1783 2225 156 28 8 chr11 1314827 1315185 -147468287 - MLT1A1 LTR MaLR 0 365 1 7395 236 40 98 chr11 1315185 1315334 -147468138 + L1MB8 LINE L1 4464 4620 -1627 2526 77 0 3 chr11 1315334 1315644 -147467828 + AluY SINE Alu 1 309 -2 7395 236 40 98 chr11 1315644 1315833 -147467639 + L1MB8 LINE L1 4620 4818 -1429 2517 151 57 5 chr11 1315833 1316237 -147467235 - MSTB LTR MaLR 0 426 2 7395 236 40 98 chr11 1316237 1316421 -147467051 + L1MB8 LINE L1 4818 5011 -1236 445 167 52 0 chr11 1316421 1316517 -147466955 + L1MB3 LINE L1 6083 6183 0 7395 236 40 98 chr11 1316517 1317689 -147465783 + L1MB8 LINE L1 5011 5670 -577 2154 101 3 3 chr11 1317695 1317991 -147465481 + AluSg SINE Alu 1 296 -14 1237 172 33 25 chr11 1318004 1318248 -147465224 + L1MB8 LINE L1 5923 6168 -79 747 179 22 8 chr11 1318253 1318387 -147465085 + Tigger1 DNA MER2_type 22 157 -2261 * 1427 105 29 5 chr11 1318376 1318586 -147464886 + Tigger1 DNA MER2_type 2202 2416 -2 551 131 0 0 chr11 1318586 1318670 -147464802 + L1MB8 LINE L1 6164 6247 0 4197 222 43 20 chr11 1318675 1319326 -147464146 + L1MD1 LINE L1 5050 5746 -496 2326 163 65 45 chr11 1319326 1319817 -147463655 - MLT1D LTR MaLR 0 505 5 4197 222 43 20 chr11 1319817 1320318 -147463154 + L1MD1 LINE L1 5746 6234 -8 696 150 55 8 chr11 1320333 1320460 -147463012 + L1M4 LINE L1 5320 5452 -732 1782 265 85 38 chr11 1320595 1321356 -147462116 + L1MC4 LINE L1 7244 8040 -2 876 200 184 0 chr11 1321402 1321587 -147461885 + MER20 DNA MER1_type 1 219 0 2148 160 12 54 chr11 1321736 1322143 -147461329 + MLT1B LTR MaLR 1 390 0 628 273 41 5 chr11 1322780 1322974 -147460498 - MIR SINE MIR -49 213 13 876 294 130 48 chr11 1323212 1324058 -147459414 + L1M4 LINE L1 2703 3617 -2529 967 280 76 16 chr11 1324230 1324662 -147458810 - L1MC/D LINE L1 -2039 5769 5312 30 27 0 0 chr11 1324782 1324819 -147458653 + AT_rich Low_complexity Low_complexity 1 37 0 2575 232 32 44 chr11 1324822 1325599 -147457873 - L1ME1 LINE L1 -4 6162 5395 4502 114 25 7 chr11 1325599 1326316 -147457156 - Tigger1 DNA MER2_type -656 1762 1 726 243 11 0 chr11 1326325 1326502 -147456970 - L1ME1 LINE L1 -1778 4368 4190 1343 302 85 28 chr11 1326505 1327545 -147455927 + L1MEd LINE L1 447 1588 -4722 189 204 143 0 chr11 1328729 1328778 -147454694 - L2 LINE L2 -339 2975 2920 285 222 56 0 chr11 1333337 1333409 -147450063 - L2 LINE L2 -307 3006 2931 449 96 0 101 chr11 1336981 1337179 -147446293 + (CA)n Simple_repeat Simple_repeat 2 179 0 282 232 0 0 chr11 1337193 1337357 -147446115 + (CA)n Simple_repeat Simple_repeat 2 165 0 394 237 39 19 chr11 1337447 1337614 -147445858 + (CATA)n Simple_repeat Simple_repeat 2 153 0 231 152 30 15 chr11 1337642 1337708 -147445764 + (CA)n Simple_repeat Simple_repeat 2 68 0 367 221 182 0 chr11 1341148 1341302 -147442170 + Charlie1 DNA MER1_type 2436 2617 -144 27 0 0 0 chr11 1341617 1341644 -147441828 + AT_rich Low_complexity Low_complexity 1 27 0 189 383 11 11 chr11 1343412 1343506 -147439966 + MIR SINE MIR 77 170 -92 274 155 52 0 chr11 1344285 1344343 -147439129 + L2 LINE L2 3006 3066 -206 217 333 0 0 chr11 1344669 1344729 -147438743 - MIR SINE MIR -109 153 94 351 247 137 93 chr11 1345505 1345869 -147437603 + MLT1B LTR MaLR 1 380 -10 340 291 10 0 chr11 1348191 1348294 -147435178 - MER45C DNA AcHobo -129 824 721 544 289 0 6 chr11 1348376 1348535 -147434937 - MER45C DNA AcHobo -738 215 58 197 217 66 57 chr11 1349966 1350072 -147433400 - MIR SINE MIR -62 146 40 242 236 79 71 chr11 1351841 1351968 -147431504 + MIR SINE MIR 113 240 -22 2252 92 0 16 chr11 1352501 1352816 -147430656 + AluSg SINE Alu 1 310 0 279 351 36 0 chr11 1352926 1353037 -147430435 + L2 LINE L2 3199 3313 0 2194 81 0 39 chr11 1353359 1353698 -147429774 - AluSx SINE Alu 0 312 1 206 296 0 0 chr11 1355197 1355251 -147428221 - MIR SINE MIR -114 148 95 851 199 0 5 chr11 1356185 1356377 -147427095 + L1M3 LINE L1 5281 5467 -698 190 329 41 0 chr11 1357934 1358007 -147425465 - L2 LINE L2 -18 3295 3220 309 346 31 25 chr11 1360117 1360276 -147423196 + L2 LINE L2 3113 3272 0 4687 173 34 12 chr11 1361273 1363005 -147420467 + L1MB7 LINE L1 4424 6175 -9 308 286 93 39 chr11 1364637 1364819 -147418653 + MIR SINE MIR 3 194 -14 2251 215 122 8 chr11 1365870 1366377 -147417095 - MLT1F1 LTR MaLR -2 565 1 190 322 46 35 chr11 1366534 1366621 -147416851 + L2 LINE L2 3214 3301 -12 492 297 92 20 chr11 1367740 1367989 -147415483 + L2 LINE L2 2551 2817 -497 230 358 43 12 chr11 1369013 1369175 -147414297 - MIR3 SINE MIR -8 200 34 195 260 80 0 chr11 1370221 1370271 -147413201 + L2 LINE L2 3180 3233 -80 796 295 70 17 chr11 1370672 1370974 -147412498 - MER45C DNA AcHobo -616 337 20 25 51 0 0 chr11 1371702 1371741 -147411731 + GC_rich Low_complexity Low_complexity 1 39 0 272 323 114 30 chr11 1374223 1374390 -147409082 + L2 LINE L2 3119 3299 -14 822 287 42 51 chr11 1374616 1375065 -147408407 + L1M4 LINE L1 3661 4105 -2041 560 224 8 0 chr11 1375157 1375291 -147408181 - Charlie1 DNA MER1_type -4 2757 2623 * 620 218 198 0 chr11 1375275 1375477 -147407995 - Charlie1 DNA MER1_type -2519 242 1 369 369 88 17 chr11 1375571 1376377 -147407095 + L1M4 LINE L1 4308 5170 -976 275 186 29 14 chr11 1376398 1376468 -147407004 + Charlie1 DNA MER1_type 68 138 -2623 383 328 90 16 chr11 1376595 1376851 -147406621 + L1M4 LINE L1 5370 5644 -534 370 316 208 17 chr11 1377346 1377839 -147405633 + L2 LINE L2 2718 3306 -7 927 227 58 5 chr11 1377949 1378156 -147405316 - MER20 DNA MER1_type 0 219 2 200 391 40 59 chr11 1379660 1379913 -147403559 - L2 LINE L2 0 3272 3025 425 317 218 20 chr11 1379992 1380594 -147402878 - L2 LINE L2 -559 2755 2035 281 302 123 34 chr11 1382137 1382316 -147401156 - MIR SINE MIR -66 196 2 360 0 0 0 chr11 1389952 1389992 -147393480 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 229 356 69 59 chr11 1389994 1390314 -147393158 - L2 LINE L2 -14 3258 2936 288 339 136 0 chr11 1390351 1390528 -147392944 + MIR SINE MIR 62 262 0 2156 167 30 8 chr11 1391574 1391976 -147391496 + L1MD1 LINE L1 5832 6242 0 317 332 52 57 chr11 1392011 1392240 -147391232 + L1MC4a LINE L1 4407 4634 -1512 24 0 0 0 chr11 1392241 1392265 -147391207 + AT_rich Low_complexity Low_complexity 1 24 0 2039 138 7 0 chr11 1392275 1392580 -147390892 + AluSx SINE Alu 1 307 -5 728 265 103 0 chr11 1392974 1393178 -147390294 - MIR SINE MIR -27 235 11 725 371 80 11 chr11 1393888 1394365 -147389107 + L1MC4a LINE L1 4742 5251 -895 621 263 115 7 chr11 1394407 1394677 -147388795 + L1MC4a LINE L1 5326 5624 -2184 259 271 119 25 chr11 1395423 1395541 -147387931 + L1MC4a LINE L1 5738 5866 -1942 404 308 36 56 chr11 1396295 1396490 -147386982 + L1MC4a LINE L1 5879 6069 -1739 243 0 0 0 chr11 1397603 1397630 -147385842 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1398037 1398078 -147385394 + (CACG)n Simple_repeat Simple_repeat 3 43 0 316 284 52 17 chr11 1399713 1399829 -147383643 + MIR SINE MIR 16 135 -73 328 308 23 30 chr11 1401849 1401982 -147381490 + MIR3 SINE MIR 49 180 -28 183 375 31 10 chr11 1401980 1402076 -147381396 + L2 LINE L2 3167 3264 -8 * 265 342 114 6 chr11 1402697 1402855 -147380617 - MIR SINE MIR -1 261 87 1935 314 78 18 chr11 1402949 1404620 -147378852 + L1ME3A LINE L1 4416 6168 -2 216 356 22 30 chr11 1405204 1405339 -147378133 - MIR3 SINE MIR -72 136 3 272 285 135 89 chr11 1411605 1411977 -147371495 - L1MC/D LINE L1 -746 5400 5209 6497 209 135 53 chr11 1412233 1414301 -147369171 + L1MD3 LINE L1 4975 7486 -509 538 178 16 47 chr11 1414301 1414430 -147369042 + MLT1F1 LTR MaLR 1 125 -442 6497 209 135 53 chr11 1414430 1414955 -147368517 + L1MD3 LINE L1 7486 7966 -29 1357 272 129 29 chr11 1414968 1415932 -147367540 + L1M4 LINE L1 4370 5429 -733 181 227 186 72 chr11 1416135 1416232 -147367240 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1417336 1417357 -147366115 + AT_rich Low_complexity Low_complexity 1 21 0 274 161 169 97 chr11 1417361 1417485 -147365987 + L1ME4a LINE L1 5961 6093 -28 896 267 91 98 chr11 1418475 1419056 -147364416 + MLT1K LTR MaLR 2 578 -10 342 301 131 31 chr11 1420912 1421141 -147362331 + LTR16C LTR ERVL 42 293 -198 521 333 87 14 chr11 1421236 1421524 -147361948 - L2 LINE L2 -555 2759 2451 5414 197 70 27 chr11 1421856 1424235 -147359237 + L1M2 LINE L1 1418 3943 -2905 1441 169 48 11 chr11 1424235 1424507 -147358965 - AluJb SINE Alu -30 282 1 5414 197 70 27 chr11 1424507 1424960 -147358512 + L1M2 LINE L1 3943 4375 -2473 405 239 23 14 chr11 1425077 1425216 -147358256 - MLT1H LTR MaLR -406 143 1 189 358 47 34 chr11 1426162 1426310 -147357162 - MIR3 SINE MIR -25 183 34 258 81 0 0 chr11 1429455 1429492 -147353980 + (GA)n Simple_repeat Simple_repeat 2 38 0 188 151 170 19 chr11 1438752 1438805 -147344667 + MIR3 SINE MIR 96 156 -52 436 228 31 6 chr11 1438856 1439011 -147344461 - MIR SINE MIR -43 219 61 1521 283 63 67 chr11 1440000 1441241 -147342231 - L1M4 LINE L1 -2353 3793 2558 5672 200 41 28 chr11 1441244 1443117 -147340355 - L1ME LINE L1 -549 5600 3706 511 320 95 54 chr11 1443159 1443557 -147339915 - L1MEd LINE L1 -2811 3318 1878 1190 308 91 37 chr11 1443697 1445192 -147338280 - L1MEd LINE L1 -4573 1737 113 1354 186 48 11 chr11 1445195 1445549 -147337923 - Charlie5 DNA MER1_type -11 2601 2235 29 0 0 0 chr11 1445553 1445582 -147337890 + AT_rich Low_complexity Low_complexity 1 29 0 308 381 14 36 chr11 1446892 1447031 -147336441 + L1MC/D LINE L1 5467 5602 -2206 235 208 94 62 chr11 1448276 1448372 -147335100 + MIR SINE MIR 31 129 -133 195 350 36 44 chr11 1448473 1448610 -147334862 + MIR3 SINE MIR 2 137 -71 318 295 74 20 chr11 1450266 1450415 -147333057 - L2 LINE L2 -309 3004 2848 466 145 0 0 chr11 1451030 1451099 -147332373 + AluJ/FLAM SINE Alu 1 69 -243 1016 183 0 0 chr11 1451099 1451263 -147332209 + AluJo/FRAM SINE Alu 137 300 -12 247 279 0 15 chr11 1456502 1456570 -147326902 + G-rich Low_complexity Low_complexity 2 68 0 420 320 90 8 chr11 1456627 1456861 -147326611 - L2 LINE L2 -254 3059 2807 262 0 53 0 chr11 1456997 1457035 -147326437 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 152 63 13 chr11 1457059 1457217 -147326255 + (TG)n Simple_repeat Simple_repeat 2 167 0 224 295 71 36 chr11 1457562 1457674 -147325798 - MIR SINE MIR -62 146 31 321 290 73 17 chr11 1458220 1458367 -147325105 + MIR SINE MIR 5 148 -62 1046 261 46 4 chr11 1458993 1459326 -147324146 - MLT1A2 LTR MaLR -23 444 1 320 267 103 0 chr11 1461913 1462029 -147321443 - MIR SINE MIR -120 142 15 226 333 0 0 chr11 1462429 1462486 -147320986 - MIR SINE MIR -93 169 113 821 251 5 5 chr11 1463120 1463319 -147320153 + MER58A DNA MER1_type 26 224 0 407 324 91 16 chr11 1463403 1463656 -147319816 + L1ME LINE L1 5539 5810 -311 201 132 0 0 chr11 1463921 1463959 -147319513 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 214 319 0 30 chr11 1465283 1465418 -147318054 + C-rich Low_complexity Low_complexity 2 132 0 208 410 35 0 chr11 1465549 1465693 -147317779 + MIR SINE MIR 91 239 -23 207 69 0 0 chr11 1466206 1466235 -147317237 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 530 229 6 0 chr11 1466488 1466667 -147316805 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr11 1466668 1466698 -147316774 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 482 144 19 0 chr11 1466828 1466932 -147316540 - HAL1b LINE L1 -278 1070 965 417 352 20 52 chr11 1467047 1467297 -147316175 - HAL1b LINE L1 -534 814 573 1128 341 85 1 chr11 1467492 1468236 -147315236 - HAL1 LINE L1 -725 1782 977 322 188 35 0 chr11 1469888 1469973 -147313499 + CT-rich Low_complexity Low_complexity 4 91 0 325 299 75 21 chr11 1470209 1470450 -147313022 + L2 LINE L2 2634 2887 -427 190 372 35 26 chr11 1470654 1470767 -147312705 + L2 LINE L2 3180 3293 -20 254 235 10 0 chr11 1471503 1471605 -147311867 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 698 208 12 0 chr11 1471621 1472054 -147311418 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 389 239 17 6 chr11 1472065 1472241 -147311231 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 342 159 0 0 chr11 1472230 1472299 -147311173 + GA-rich Low_complexity Low_complexity 1 69 0 * 192 333 200 0 chr11 1472664 1472769 -147310703 - MIR SINE MIR -2 260 135 271 253 12 0 chr11 1474293 1474376 -147309096 + L2 LINE L2 2891 2974 -339 351 167 51 0 chr11 1475523 1475601 -147307871 - MER103 DNA DNA -67 99 18 234 62 0 0 chr11 1476716 1476748 -147306724 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 227 326 63 0 chr11 1476753 1476848 -147306624 - L2 LINE L2 -36 3236 3136 366 333 165 12 chr11 1477099 1477354 -147306118 - L1 LINE L1 -2310 3836 3543 297 313 144 16 chr11 1477410 1478040 -147305432 - L1 LINE L1 -2665 3481 2771 264 30 0 0 chr11 1478181 1478214 -147305258 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1514 194 110 22 chr11 1479498 1479942 -147303530 + MLT1D LTR MaLR 23 505 0 196 313 119 99 chr11 1479949 1480351 -147303121 - L2 LINE L2 -46 3226 2817 352 288 59 13 chr11 1480466 1480702 -147302770 + HAL1 LINE L1 1017 1263 -1244 697 247 142 78 chr11 1480713 1481264 -147302208 + HAL1 LINE L1 1337 1922 -585 281 233 0 22 chr11 1481690 1481780 -147301692 + (CA)n Simple_repeat Simple_repeat 1 88 0 267 289 198 0 chr11 1483179 1483300 -147300172 - L2 LINE L2 -9 3263 3119 184 268 0 0 chr11 1484364 1484405 -147299067 - L2 LINE L2 -31 3241 3201 571 340 41 16 chr11 1484927 1485242 -147298230 - MLT1J LTR MaLR -148 363 41 237 384 133 17 chr11 1485304 1485778 -147297694 - L2 LINE L2 -769 2545 2017 406 275 42 75 chr11 1485908 1486148 -147297324 + HAL1 LINE L1 6 237 -2270 395 311 40 31 chr11 1486197 1486419 -147297053 + HAL1 LINE L1 391 614 -1893 2346 237 77 46 chr11 1486426 1487420 -147296052 + HAL1 LINE L1 1392 2415 -92 330 104 0 78 chr11 1487545 1487660 -147295812 + (GGA)n Simple_repeat Simple_repeat 1 106 0 213 261 0 0 chr11 1488459 1488505 -147294967 + MIR3 SINE MIR 109 154 -54 225 441 11 0 chr11 1488596 1488775 -147294697 + MIR SINE MIR 36 216 -46 194 336 58 73 chr11 1489030 1489167 -147294305 + L2 LINE L2 3022 3156 -116 224 202 8 40 chr11 1489212 1489336 -147294136 + C-rich Low_complexity Low_complexity 1 120 0 251 210 7 91 chr11 1491727 1491870 -147291602 + (ACGTG)n Simple_repeat Simple_repeat 5 135 0 303 28 0 0 chr11 1493007 1493043 -147290429 + (CA)n Simple_repeat Simple_repeat 1 36 0 294 304 174 66 chr11 1493125 1493549 -147289923 - L2 LINE L2 -6 3307 2838 217 259 103 52 chr11 1493755 1493929 -147289543 - L2 LINE L2 -2678 636 454 205 299 73 15 chr11 1495270 1495407 -147288065 - L2 LINE L2 -213 3059 2915 1902 147 180 11 chr11 1497590 1497957 -147285515 - Tigger2a DNA MER2_type -2 432 4 210 372 75 21 chr11 1498540 1498728 -147284744 - L2 LINE L2 -14 3299 3102 245 327 154 29 chr11 1498861 1499069 -147284403 - L2 LINE L2 -509 2805 2572 689 321 11 0 chr11 1500398 1500585 -147282887 - MIR SINE MIR -28 234 46 230 238 32 16 chr11 1509238 1509301 -147274171 + L2 LINE L2 3209 3272 0 2321 51 27 10 chr11 1509710 1510004 -147273468 - AluY SINE Alu -12 299 1 198 207 0 0 chr11 1511852 1511910 -147271562 + (CA)n Simple_repeat Simple_repeat 2 59 0 317 247 6 0 chr11 1511926 1512092 -147271380 + (CA)n Simple_repeat Simple_repeat 1 167 0 239 333 21 0 chr11 1513524 1513620 -147269852 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1513758 1514047 -147269425 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1515246 1515375 -147268097 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1517388 1517475 -147265997 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1519559 1519614 -147263858 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1519904 1519970 -147263502 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1520009 1520046 -147263426 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1520361 1520405 -147263067 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1520495 1520545 -147262927 + GC_rich Low_complexity Low_complexity 1 50 0 304 345 90 55 chr11 1521043 1521134 -147262338 + HAL1 LINE L1 1004 1090 -1417 1495 177 75 17 chr11 1521134 1521428 -147262044 + AluJb SINE Alu 2 312 0 304 345 90 55 chr11 1521428 1521626 -147261846 + HAL1 LINE L1 1090 1303 -1204 764 186 0 0 chr11 1522878 1523002 -147260470 + FLAM_A SINE Alu 1 124 -9 1758 140 0 29 chr11 1523018 1523296 -147260176 + AluJo SINE Alu 19 288 -24 24 0 0 0 chr11 1523296 1523320 -147260152 + AT_rich Low_complexity Low_complexity 1 24 0 398 304 33 76 chr11 1523334 1523518 -147259954 + L1ME4a LINE L1 5944 6119 -2 196 354 13 0 chr11 1523954 1524033 -147259439 - MIR SINE MIR -84 124 45 1976 176 43 5 chr11 1524646 1525022 -147258450 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1525679 1525734 -147257738 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1526294 1526332 -147257140 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1527261 1527329 -147256143 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1529917 1530249 -147253223 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1530440 1530487 -147252985 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1530488 1530814 -147252658 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1530816 1530893 -147252579 - AluSp SINE Alu -181 132 56 954 187 88 75 chr11 1530894 1531130 -147252342 - MLT1A1 LTR MaLR -38 327 96 2050 126 3 19 chr11 1531130 1531447 -147252025 - AluSx SINE Alu 0 312 1 1513 173 47 20 chr11 1531448 1531749 -147251723 - AluJo SINE Alu -3 309 1 954 187 88 75 chr11 1531749 1531815 -147251657 - MLT1A1 LTR MaLR -268 97 19 252 294 59 12 chr11 1532186 1532271 -147251201 - MIR3 SINE MIR -11 197 109 859 175 0 0 chr11 1533229 1533372 -147250100 - FLAM_C SINE Alu 0 143 1 313 289 66 33 chr11 1533373 1533525 -147249947 + L1MC5 LINE L1 7760 7916 -45 296 283 42 17 chr11 1533615 1533735 -147249737 + (CATATA)n Simple_repeat Simple_repeat 2 124 0 1849 151 3 10 chr11 1533992 1534283 -147249189 - AluJb SINE Alu -3 309 21 576 299 97 30 chr11 1534393 1534790 -147248682 + MLT1G1 LTR MaLR 12 535 -60 2254 87 3 10 chr11 1534790 1535100 -147248372 - AluY SINE Alu -3 308 1 576 299 97 30 chr11 1535100 1535166 -147248306 + MLT1G1 LTR MaLR 535 595 0 2188 104 0 0 chr11 1535542 1535839 -147247633 - AluY SINE Alu -14 297 1 1762 157 0 41 chr11 1535841 1536159 -147247313 - AluJb SINE Alu -7 305 1 400 341 97 19 chr11 1536576 1536896 -147246576 - MLT1I LTR MaLR -23 386 42 3131 162 34 24 chr11 1537161 1537783 -147245689 + L1MC1 LINE L1 5540 6167 -166 239 302 52 10 chr11 1537963 1538059 -147245413 + L2 LINE L2 3174 3273 -40 260 326 132 21 chr11 1538572 1538716 -147244756 + MIR SINE MIR 1 160 -102 233 235 176 29 chr11 1539016 1539118 -147244354 - MIR3 SINE MIR -7 201 85 261 119 0 0 chr11 1541208 1541250 -147242222 + (T)n Simple_repeat Simple_repeat 1 42 0 39 92 0 0 chr11 1541755 1541864 -147241608 + GC_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr11 1541941 1541964 -147241508 + GC_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 1541988 1542033 -147241439 + GC_rich Low_complexity Low_complexity 1 45 0 223 179 45 15 chr11 1542238 1542305 -147241167 + (CCGGG)n Simple_repeat Simple_repeat 3 71 0 447 278 0 0 chr11 1542488 1542664 -147240808 + (CTGGGG)n Simple_repeat Simple_repeat 3 178 0 233 170 0 38 chr11 1543159 1543212 -147240260 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr11 1543445 1543484 -147239988 + GC_rich Low_complexity Low_complexity 1 39 0 213 125 62 0 chr11 1543535 1543583 -147239889 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 226 217 9 47 chr11 1543604 1543710 -147239762 + G-rich Low_complexity Low_complexity 1 102 0 206 266 0 0 chr11 1543748 1543812 -147239660 + C-rich Low_complexity Low_complexity 1 64 0 236 212 26 62 chr11 1543837 1543950 -147239522 + (CCCGG)n Simple_repeat Simple_repeat 2 110 0 306 73 0 0 chr11 1544486 1544527 -147238945 + (CA)n Simple_repeat Simple_repeat 1 41 0 191 295 39 26 chr11 1545799 1545877 -147237595 + L3 LINE CR1 1279 1357 -220 256 275 75 0 chr11 1546038 1546158 -147237314 + MLT1J2 LTR MaLR 34 162 -288 1792 163 3 7 chr11 1546455 1546756 -147236716 + AluJb SINE Alu 13 312 0 233 304 48 32 chr11 1546939 1547064 -147236408 - MIR SINE MIR -77 185 59 416 323 38 0 chr11 1547767 1547925 -147235547 - MIR SINE MIR -14 248 85 380 250 0 0 chr11 1549408 1549492 -147233980 - MIR SINE MIR -57 151 68 181 237 51 0 chr11 1549950 1550009 -147233463 + MIR SINE MIR 86 147 -61 247 215 0 32 chr11 1550209 1550302 -147233170 + CT-rich Low_complexity Low_complexity 3 92 0 459 95 0 0 chr11 1550823 1550897 -147232575 + MIR SINE MIR 66 139 -123 2263 92 10 0 chr11 1551162 1551457 -147232015 - AluSg SINE Alu -12 298 1 521 308 66 31 chr11 1551648 1551875 -147231597 - MIR SINE MIR -7 255 21 1858 142 6 31 chr11 1552047 1552364 -147231108 - AluSx SINE Alu -3 309 1 1522 177 65 31 chr11 1553218 1553512 -147229960 + AluJo SINE Alu 1 304 -8 234 255 0 0 chr11 1553801 1553848 -147229624 + (CA)n Simple_repeat Simple_repeat 1 47 0 372 241 25 0 chr11 1554146 1554225 -147229247 - MER81 DNA DNA -17 97 17 254 300 348 12 chr11 1555681 1556504 -147226968 + L2 LINE L2 1692 2790 -524 245 329 37 0 chr11 1556601 1556683 -147226789 + L2 LINE L2 3224 3308 -5 363 326 105 44 chr11 1556856 1557200 -147226272 + L2 LINE L2 2815 3179 -93 2903 159 24 39 chr11 1557927 1558051 -147225421 - MER39B LTR ERV1 -39 614 490 2519 35 3 7 chr11 1558051 1558361 -147225111 + AluY SINE Alu 1 309 -2 2903 159 24 39 chr11 1558361 1558859 -147224613 - MER39B LTR ERV1 -163 490 1 342 254 8 31 chr11 1559488 1559618 -147223854 + C-rich Low_complexity Low_complexity 1 127 0 292 236 100 18 chr11 1562126 1562236 -147221236 + MIR SINE MIR 117 235 -27 303 251 228 40 chr11 1562564 1562990 -147220482 - L2 LINE L2 -735 2579 2074 1610 53 18 0 chr11 1563079 1563306 -147220166 - L1PA5 LINE L1 -253 5901 5671 187 223 97 39 chr11 1563568 1563671 -147219801 - L2 LINE L2 -1688 1626 1518 6772 45 6 0 chr11 1563707 1564523 -147218949 + L1PA6 LINE L1 5334 6154 0 1464 205 166 27 chr11 1564878 1565288 -147218184 - MLT1C LTR MaLR 0 467 1 209 348 211 3 chr11 1568265 1568564 -147214908 - L2 LINE L2 -670 2644 2284 211 243 27 40 chr11 1571717 1571791 -147211681 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1572908 1572953 -147210519 + (TG)n Simple_repeat Simple_repeat 1 45 0 1538 150 58 0 chr11 1576365 1576625 -147206847 - AluJb SINE Alu -21 291 17 350 256 87 23 chr11 1576705 1576877 -147206595 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1577261 1577434 -147206038 + MIR SINE MIR 27 221 -41 2349 48 0 32 chr11 1578587 1578897 -147204575 + AluY SINE Alu 1 300 -11 281 156 47 55 chr11 1580217 1580345 -147203127 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2286 76 0 20 chr11 1583107 1583408 -147200064 + AluSc SINE Alu 1 295 -14 1918 183 40 0 chr11 1584082 1584405 -147199067 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1586998 1587038 -147196434 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 236 217 0 0 chr11 1587600 1587646 -147195826 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1588149 1588237 -147195235 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1590121 1590181 -147193291 - MIR SINE MIR -62 146 86 181 171 98 0 chr11 1590628 1590669 -147192803 - MIR SINE MIR -92 116 72 1888 144 0 20 chr11 1591847 1592145 -147191327 + AluJo SINE Alu 1 292 -20 668 204 0 29 chr11 1592735 1592872 -147190600 + FLAM_C SINE Alu 1 133 0 2323 64 43 0 chr11 1592882 1593163 -147190309 + AluY SINE Alu 3 295 -16 2286 92 0 78 chr11 1593237 1593572 -147189900 + AluSq SINE Alu 2 310 -3 1259 202 47 0 chr11 1593572 1593849 -147189623 + L1MB3 LINE L1 5819 6108 -75 309 211 44 22 chr11 1595418 1595508 -147187964 + L1MB3 LINE L1 6090 6181 -2 1851 171 3 3 chr11 1595877 1596206 -147187266 + AluSx SINE Alu 9 337 0 422 232 84 80 chr11 1596362 1596599 -147186873 + MLT1D LTR MaLR 8 245 -260 234 278 0 0 chr11 1596970 1597024 -147186448 - MIR SINE MIR -113 149 96 210 71 0 0 chr11 1597122 1597150 -147186322 + (GGCTG)n Simple_repeat Simple_repeat 1 28 0 2263 108 3 0 chr11 1598494 1598789 -147184683 + AluSx SINE Alu 1 296 -16 352 250 23 0 chr11 1598800 1598888 -147184584 - L1ME2 LINE L1 -9 6155 6066 327 175 333 8 chr11 1603596 1603722 -147179750 + MER46A DNA MER2_type 1 167 -69 349 281 276 5 chr11 1609444 1609643 -147173829 - MIR SINE MIR -8 254 2 675 205 119 11 chr11 1609818 1610003 -147173469 - MER3 DNA MER1_type -4 205 1 1286 178 91 56 chr11 1611540 1611678 -147171794 - AluJo SINE Alu -6 296 164 1955 137 10 33 chr11 1611678 1611985 -147171487 - AluSx SINE Alu -12 300 1 1286 178 91 56 chr11 1611985 1612132 -147171340 - AluJo SINE Alu -138 164 1 301 234 16 70 chr11 1613425 1613553 -147169919 - L1MB8 LINE L1 -3 6175 6055 25 0 0 0 chr11 1614211 1614236 -147169236 + AT_rich Low_complexity Low_complexity 1 25 0 276 302 39 34 chr11 1617146 1617325 -147166147 + L1ME LINE L1 5556 5735 -386 451 300 137 13 chr11 1617346 1617573 -147165899 + MIR SINE MIR 5 259 -3 927 128 0 0 chr11 1618180 1618313 -147165159 - FLAM_C SINE Alu 0 133 1 238 158 0 53 chr11 1618533 1618590 -147164882 + AluSp SINE Alu 118 171 -132 313 308 8 53 chr11 1618603 1618736 -147164736 + L1ME LINE L1 5596 5722 -399 308 319 28 14 chr11 1619204 1619301 -147164171 + L1MCa LINE L1 2232 2333 -4093 2599 78 0 0 chr11 1619301 1619610 -147163862 + AluSc SINE Alu 1 309 0 308 319 28 14 chr11 1619610 1619656 -147163816 + L1MCa LINE L1 2333 2377 -4049 1422 184 141 3 chr11 1621699 1622004 -147161468 - MER7A DNA MER2_type -1 345 1 2224 58 68 4 chr11 1622033 1622311 -147161161 - AluY SINE Alu -15 296 1 1314 171 122 49 chr11 1622660 1623045 -147160427 - L1MA5 LINE L1 -5 6295 5883 638 247 97 0 chr11 1623616 1623770 -147159702 + FAM SINE Alu 1 169 -6 2513 57 6 22 chr11 1623824 1624140 -147159332 + AluY SINE Alu 1 311 0 189 206 0 0 chr11 1624794 1624828 -147158644 - MER5B DNA MER1_type -125 53 20 1791 150 61 10 chr11 1625479 1625772 -147157700 - AluJb SINE Alu -4 308 1 1513 210 93 0 chr11 1628238 1628572 -147154900 + MER47A DNA MER2_type 2 366 0 21 0 0 0 chr11 1628802 1628823 -147154649 + AT_rich Low_complexity Low_complexity 1 21 0 246 233 194 61 chr11 1628838 1629183 -147154289 + L1ME LINE L1 5256 5652 -469 1846 156 17 13 chr11 1629186 1629487 -147153985 + AluJo SINE Alu 1 302 -10 1801 174 3 0 chr11 1630277 1630564 -147152908 - AluJb SINE Alu -24 288 1 902 35 18 0 chr11 1630629 1630742 -147152730 - L1PA4 LINE L1 0 6155 6041 1890 105 81 48 chr11 1631110 1631239 -147152233 + AluSx SINE Alu 1 124 -188 212 0 36 0 chr11 1631239 1631267 -147152205 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 568 130 0 0 chr11 1631273 1631365 -147152107 + L1PA8 LINE L1 6076 6167 -5 1890 105 81 48 chr11 1631365 1631523 -147151949 + AluSx SINE Alu 128 305 -7 919 199 23 0 chr11 1631654 1631825 -147151647 + AluJo SINE Alu 120 294 -18 572 237 18 0 chr11 1631950 1632064 -147151408 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr11 1632775 1632798 -147150674 + AT_rich Low_complexity Low_complexity 1 23 0 503 304 154 27 chr11 1633675 1634189 -147149283 + L1MC4 LINE L1 7213 7791 -251 323 250 68 104 chr11 1634298 1634386 -147149086 + L1MC5 LINE L1 7733 7823 -138 710 214 8 0 chr11 1634386 1634517 -147148955 + FLAM_A SINE Alu 1 132 -1 323 250 68 104 chr11 1634517 1634620 -147148852 + L1MC5 LINE L1 7823 7917 -44 720 218 84 6 chr11 1635804 1635983 -147147489 + L1ME2 LINE L1 5972 6164 0 2205 96 4 0 chr11 1635990 1636298 -147147174 + AluSq SINE Alu 1 309 0 1838 148 25 3 chr11 1636701 1636985 -147146487 - AluJo SINE Alu -22 290 1 1816 152 7 29 chr11 1637449 1637759 -147145713 + AluSx SINE Alu 4 306 -6 960 115 0 55 chr11 1637783 1637948 -147145524 + FRAM SINE Alu 21 176 0 2326 85 7 0 chr11 1638054 1638349 -147145123 + AluSp SINE Alu 1 297 -16 236 189 151 0 chr11 1638709 1638762 -147144710 - L1ME LINE L1 -485 5636 5576 317 261 81 27 chr11 1639029 1639140 -147144332 - MIR SINE MIR -72 190 74 2240 106 3 0 chr11 1639248 1639550 -147143922 + AluSg SINE Alu 1 303 -7 238 209 209 0 chr11 1639678 1639745 -147143727 + L2 LINE L2 3232 3312 -1 814 198 0 32 chr11 1639866 1640023 -147143449 - FRAM SINE Alu -24 152 1 1470 134 20 35 chr11 1640261 1640515 -147142957 + AluSx SINE Alu 57 306 -6 908 178 0 46 chr11 1640519 1640693 -147142779 + FRAM SINE Alu 1 166 -10 2398 86 7 0 chr11 1640794 1641096 -147142376 + AluSp SINE Alu 1 304 -9 183 290 75 32 chr11 1641206 1641299 -147142173 + MIR SINE MIR 105 201 -61 2062 132 87 3 chr11 1641408 1641741 -147141731 - MER46B DNA MER2_type 0 236 1 812 161 111 5 chr11 1641995 1642202 -147141270 + L1MA8 LINE L1 6057 6289 -2 2164 129 0 0 chr11 1642592 1642903 -147140569 + AluSx SINE Alu 1 311 -1 2068 87 30 33 chr11 1643121 1643421 -147140051 - AluSq SINE Alu -12 301 3 609 177 0 71 chr11 1643806 1643947 -147139525 - FLAM_C SINE Alu -2 131 1 2287 79 3 7 chr11 1643974 1644277 -147139195 + AluSx SINE Alu 1 302 -10 295 309 32 16 chr11 1644292 1644415 -147139057 + L2 LINE L2 3180 3304 -9 341 272 258 14 chr11 1644809 1645026 -147138446 + L2 LINE L2 3026 3295 -18 495 256 34 59 chr11 1647144 1647343 -147136129 + MIR SINE MIR 37 234 -28 216 200 0 91 chr11 1648524 1648634 -147134838 + C-rich Low_complexity Low_complexity 3 102 0 40 49 0 0 chr11 1648649 1648710 -147134762 + GC_rich Low_complexity Low_complexity 1 61 0 587 151 0 0 chr11 1649980 1650066 -147133406 + AluJb SINE Alu 40 125 -187 1248 180 85 35 chr11 1650072 1650355 -147133117 + AluJb SINE Alu 2 298 -4 2433 39 3 10 chr11 1650355 1650661 -147132811 + AluY SINE Alu 1 304 -7 228 175 0 0 chr11 1651138 1651178 -147132294 + MLT1C LTR MaLR 74 113 -354 1438 161 12 24 chr11 1651179 1651433 -147132039 + AluJo SINE Alu 43 293 -19 204 256 0 0 chr11 1651434 1651477 -147131995 - MER5B DNA MER1_type -135 43 1 200 299 90 0 chr11 1651696 1651763 -147131709 + L2 LINE L2 3170 3242 -30 300 256 80 73 chr11 1652173 1652310 -147131162 + HAL1b LINE L1 1204 1341 -7 244 330 75 41 chr11 1653120 1653193 -147130279 - L1MC5 LINE L1 -283 7678 7609 2255 71 30 7 chr11 1653193 1653490 -147129982 - AluSp SINE Alu -9 304 1 244 330 75 41 chr11 1653490 1653761 -147129711 - L1MC5 LINE L1 -352 7609 7322 231 236 28 28 chr11 1653777 1653849 -147129623 + MER5A DNA MER1_type 29 100 -89 316 312 63 35 chr11 1653957 1654290 -147129182 - L1MC4 LINE L1 -673 7369 7032 1182 173 13 9 chr11 1654401 1654627 -147128845 - AluJo SINE Alu -1 311 85 305 195 5 0 chr11 1654628 1654688 -147128784 - L1MC4 LINE L1 -1032 7010 6856 695 281 57 24 chr11 1654718 1655084 -147128388 - L1MD2 LINE L1 -92 6267 5835 432 310 144 16 chr11 1655094 1655413 -147128059 - L1MC4a LINE L1 -945 6863 6504 2046 94 0 0 chr11 1655434 1655700 -147127772 + AluSx SINE Alu 1 266 -46 511 308 113 44 chr11 1655964 1656399 -147127073 + MLT1G LTR MaLR 56 549 0 25 0 0 0 chr11 1656441 1656466 -147127006 + AT_rich Low_complexity Low_complexity 1 25 0 310 303 49 43 chr11 1656489 1656651 -147126821 - L1MD2 LINE L1 -1963 5845 5683 359 299 98 40 chr11 1659674 1659848 -147123624 - L2 LINE L2 -839 2475 2292 280 289 67 19 chr11 1659866 1659970 -147123502 - L2 LINE L2 -925 2389 2281 2268 92 0 7 chr11 1661315 1661618 -147121854 + AluSg SINE Alu 1 301 -9 216 0 0 0 chr11 1661985 1662009 -147121463 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1768 119 83 4 chr11 1662120 1662397 -147121075 - AluSx SINE Alu -12 300 2 927 180 0 0 chr11 1662493 1662654 -147120818 + L1MA4 LINE L1 6134 6294 -6 2048 103 43 10 chr11 1662664 1662966 -147120506 + AluSx SINE Alu 1 312 0 2154 111 0 0 chr11 1664826 1665123 -147118349 + AluSc SINE Alu 1 297 -12 1591 214 38 3 chr11 1665693 1666062 -147117410 + L1MB3 LINE L1 5759 6140 -43 180 382 67 0 chr11 1667539 1667628 -147115844 + MIR SINE MIR 158 252 -10 2233 45 0 28 chr11 1667811 1668119 -147115353 + AluY SINE Alu 1 300 0 366 294 52 0 chr11 1668468 1668621 -147114851 + MER20 DNA MER1_type 57 217 -2 2048 99 0 0 chr11 1669365 1669638 -147113834 - AluSc SINE Alu 0 309 37 2222 77 11 0 chr11 1669647 1669932 -147113540 - AluSp SINE Alu -19 294 7 1762 101 4 19 chr11 1670055 1670312 -147113160 + AluSg SINE Alu 1 253 -57 270 176 0 0 chr11 1670405 1670456 -147113016 + AluSg SINE Alu 257 307 -1 2331 84 0 10 chr11 1672698 1673008 -147110464 - AluY SINE Alu -3 308 2 1429 197 24 7 chr11 1673103 1673398 -147110074 - AluJb SINE Alu -12 300 1 2303 82 3 3 chr11 1673847 1674153 -147109319 + AluSp SINE Alu 1 306 -7 215 299 39 13 chr11 1675380 1675457 -147108015 - MIR SINE MIR -166 96 18 2081 87 3 48 chr11 1675900 1676210 -147107262 + AluSg SINE Alu 1 296 -14 247 344 41 16 chr11 1676412 1676534 -147106938 - MIR3 SINE MIR -7 201 77 239 238 119 16 chr11 1678065 1678191 -147105281 - L1ME4a LINE L1 -9 6112 5974 1583 238 65 19 chr11 1678525 1679054 -147104418 + LTR26E LTR ERV1 1 622 0 243 103 0 0 chr11 1679868 1679907 -147103565 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1556 176 11 0 chr11 1679907 1680168 -147103304 - AluJb SINE Alu -36 276 13 277 295 124 30 chr11 1680171 1680376 -147103096 - L1M4 LINE L1 -2849 3297 3113 2360 80 0 0 chr11 1680376 1680676 -147102796 - AluSg SINE Alu -9 301 2 277 295 124 30 chr11 1680676 1680907 -147102565 - L1M4 LINE L1 -3033 3113 2820 1971 147 0 0 chr11 1680935 1681234 -147102238 - AluJo SINE Alu -13 299 1 2192 113 0 0 chr11 1681708 1682009 -147101463 - AluSx SINE Alu -6 306 6 2540 174 36 11 chr11 1682496 1682972 -147100500 + L1MA4 LINE L1 5810 6297 -3 8751 41 2 1 chr11 1683932 1684938 -147098534 + LTR13 LTR ERVK 1 1007 0 410 323 65 46 chr11 1687034 1687821 -147095651 + L1MEd LINE L1 939 1762 -4845 2652 169 27 4 chr11 1687987 1688466 -147095006 + L1MEd LINE L1 7 496 -5930 546 91 0 0 chr11 1688471 1688548 -147094924 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1987 112 0 0 chr11 1688548 1688825 -147094647 - AluSc SINE Alu -32 277 1 945 221 4 65 chr11 1688826 1689057 -147094415 + MER21B LTR ERV1 575 791 -72 1802 181 75 14 chr11 1689099 1689514 -147093958 + L1MC1 LINE L1 5889 6328 -5 841 305 98 82 chr11 1689520 1690248 -147093224 + L1MEd LINE L1 2769 3507 -2919 26 0 0 0 chr11 1690377 1690403 -147093069 + AT_rich Low_complexity Low_complexity 1 26 0 801 193 0 0 chr11 1690403 1690538 -147092934 - AluJo SINE Alu -177 135 1 201 200 20 0 chr11 1690610 1690660 -147092812 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2269 93 7 0 chr11 1690664 1690974 -147092498 - AluSx SINE Alu 0 312 1 2044 114 0 20 chr11 1690988 1691287 -147092185 - AluSc SINE Alu -16 293 1 2008 129 88 16 chr11 1691287 1691651 -147091821 - MSTC LTR MaLR -38 390 1 2405 257 45 14 chr11 1691742 1691938 -147091534 + L1MB5 LINE L1 5351 5539 -644 1781 176 0 7 chr11 1691938 1692239 -147091233 - AluJo SINE Alu -13 299 1 2405 257 45 14 chr11 1692239 1692264 -147091208 + L1MB5 LINE L1 5539 5562 -621 932 278 141 43 chr11 1692264 1692774 -147090698 + MER68 LTR ERV1 1 560 -2 2405 257 45 14 chr11 1692774 1693387 -147090085 + L1MB5 LINE L1 5562 5901 -282 382 102 0 0 chr11 1693411 1693470 -147090002 + L1MB2 LINE L1 6113 6171 0 413 245 93 16 chr11 1694785 1694953 -147088519 + MIR SINE MIR 8 184 -37 2247 161 68 12 chr11 1696432 1696841 -147086631 + Tigger2a DNA MER2_type 2 433 -1 379 263 177 7 chr11 1697744 1697949 -147085523 - MIR SINE MIR 0 262 23 696 150 0 9 chr11 1698883 1698996 -147084476 - AluY SINE Alu -16 295 184 1896 123 50 0 chr11 1700877 1701154 -147082318 - AluSg SINE Alu -19 291 1 2177 75 0 0 chr11 1701742 1702023 -147081449 - AluY SINE Alu -30 281 1 2496 57 0 0 chr11 1703455 1703756 -147079716 + AluY SINE Alu 1 301 -10 617 209 199 31 chr11 1704587 1704783 -147078689 + L1MB5 LINE L1 5928 6156 -18 1060 174 0 0 chr11 1704820 1704981 -147078491 - U1 snRNA snRNA -4 161 1 516 280 131 27 chr11 1705129 1705546 -147077926 + MER67B LTR ERV1 34 533 -128 978 176 0 0 chr11 1705546 1705742 -147077730 - FRAM SINE Alu 0 176 1 457 267 15 0 chr11 1705742 1705877 -147077595 + MER67B LTR ERV1 525 661 0 252 276 115 0 chr11 1708486 1708573 -147074899 + L1ME4a LINE L1 6022 6118 -3 210 321 94 19 chr11 1708725 1708831 -147074641 + MIR SINE MIR 124 237 -25 33 25 0 0 chr11 1708946 1708986 -147074486 + AT_rich Low_complexity Low_complexity 1 40 0 2253 72 3 0 chr11 1709665 1709993 -147073479 - AluSx SINE Alu 0 312 1 341 277 36 0 chr11 1710093 1710205 -147073267 + MER5A DNA MER1_type 36 151 -38 708 290 43 24 chr11 1711036 1711291 -147072181 + MIR SINE MIR 2 261 -1 2012 55 76 7 chr11 1711627 1711902 -147071570 - AluY SINE Alu -17 294 1 290 288 39 10 chr11 1712262 1712439 -147071033 - MIR SINE MIR -21 241 6 979 188 0 0 chr11 1714520 1714690 -147068782 + FRAM SINE Alu 1 166 -10 2367 90 0 0 chr11 1714741 1715051 -147068421 + AluSx SINE Alu 1 310 -2 850 158 0 0 chr11 1715535 1715668 -147067804 + AluSq/x SINE Alu 1 133 -179 811 118 77 29 chr11 1715872 1716042 -147067430 + MLT1C LTR MaLR 1 178 -289 836 175 7 13 chr11 1716042 1716223 -147067249 + FRAM SINE Alu 1 173 0 26 0 0 27 chr11 1716226 1716249 -147067223 + AT_rich Low_complexity Low_complexity 1 24 -12 2172 84 7 0 chr11 1716249 1716536 -147066936 - AluSp SINE Alu -24 289 1 26 0 0 27 chr11 1716536 1716549 -147066923 + AT_rich Low_complexity Low_complexity 24 36 0 1342 174 89 0 chr11 1716552 1716823 -147066649 + MLT1C LTR MaLR 170 388 -2 1338 215 95 31 chr11 1717357 1717436 -147066036 + MLT1C LTR MaLR 1 74 -393 1999 147 0 3 chr11 1717436 1717749 -147065723 - AluJb SINE Alu 0 312 1 1338 215 95 31 chr11 1717749 1718059 -147065413 + MLT1C LTR MaLR 74 415 -52 2027 116 0 38 chr11 1718117 1718437 -147065035 - AluSx SINE Alu -4 308 1 410 113 16 0 chr11 1719649 1719711 -147063761 + AluJb SINE Alu 167 229 -83 3518 79 2 4 chr11 1719714 1720183 -147063289 + THE1A-int LTR MaLR 1113 1580 0 1440 126 13 4 chr11 1720183 1720413 -147063059 + THE1A LTR MaLR 1 232 -123 5073 94 35 0 chr11 1720413 1721136 -147062336 - THE1A-int LTR MaLR -830 750 3 1012 70 0 0 chr11 1721137 1721265 -147062207 - THE1A LTR MaLR 0 355 228 683 66 0 0 chr11 1721265 1721356 -147062116 - AluSp/q SINE Alu -8 305 215 1350 132 21 13 chr11 1721356 1721591 -147061881 - THE1A LTR MaLR -118 237 1 4207 181 21 38 chr11 1721591 1721670 -147061802 - L1P LINE L1 -744 5402 5323 2049 118 7 0 chr11 1721670 1721958 -147061514 - AluSc SINE Alu -19 290 1 4207 181 21 38 chr11 1721958 1722674 -147060798 - L1P LINE L1 -823 5323 4597 1757 155 9 25 chr11 1722674 1722990 -147060482 - AluJb SINE Alu -1 311 1 4207 181 21 38 chr11 1722990 1723066 -147060406 - L1P LINE L1 -1549 4597 4521 2131 103 0 0 chr11 1723066 1723373 -147060099 + AluSp SINE Alu 1 307 0 4207 181 21 38 chr11 1723373 1723520 -147059952 - L1P LINE L1 -1625 4521 4398 186 43 0 0 chr11 1723522 1723545 -147059927 + (T)n Simple_repeat Simple_repeat 1 23 0 1030 169 34 0 chr11 1723582 1723759 -147059713 - AluSg/x SINE Alu -1 311 129 1666 68 0 0 chr11 1723759 1723964 -147059508 - AluSq SINE Alu -108 205 1 248 333 0 0 chr11 1724716 1724827 -147058645 - L1M4 LINE L1 -3600 2546 2436 765 234 234 0 chr11 1724837 1725058 -147058414 - MER82 DNA MER2_type -1 652 368 228 35 0 0 chr11 1725058 1725087 -147058385 + (TG)n Simple_repeat Simple_repeat 1 29 0 765 234 234 0 chr11 1725087 1725109 -147058363 - MER82 DNA MER2_type -285 368 352 762 185 31 25 chr11 1725112 1725274 -147058198 + FRAM SINE Alu 1 162 -14 2073 94 14 0 chr11 1725297 1725583 -147057889 + AluSp SINE Alu 1 290 -23 1591 163 61 3 chr11 1725591 1725885 -147057587 + AluSx SINE Alu 2 312 0 3174 214 22 27 chr11 1726012 1727045 -147056427 + L1P3 LINE L1 981 2000 -4461 6033 85 2 0 chr11 1727145 1728001 -147055471 - L1P LINE L1 -1542 4604 3747 2436 11 0 0 chr11 1728000 1728419 -147055053 + L1P1 LINE L1 5133 5551 -604 * 412 172 188 39 chr11 1729409 1729537 -147053935 - L2 LINE L2 0 3313 3167 395 209 17 52 chr11 1729821 1729936 -147053536 - L1MD3 LINE L1 -43 7952 7842 573 211 17 18 chr11 1729936 1730066 -147053406 - MER20 DNA MER1_type -57 162 48 435 289 106 83 chr11 1730658 1731120 -147052352 + L1MC/D LINE L1 4948 5431 -767 286 330 59 77 chr11 1731141 1731414 -147052058 - MLT1I LTR MaLR -13 396 129 2487 229 107 27 chr11 1731568 1731926 -147051546 - L1 LINE L1 -3739 3826 3498 366 91 0 0 chr11 1731926 1731981 -147051491 + (TG)n Simple_repeat Simple_repeat 2 56 0 2487 229 107 27 chr11 1731981 1732786 -147050686 - L1 LINE L1 -4067 3498 2582 1073 62 0 0 chr11 1732897 1733041 -147050431 + AluY SINE Alu 156 299 -12 271 188 39 47 chr11 1734404 1734532 -147048940 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2263 76 0 20 chr11 1737354 1737655 -147045817 + AluSc SINE Alu 1 295 -14 1892 183 40 0 chr11 1738330 1738653 -147044819 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1741246 1741286 -147042186 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 22 0 0 0 chr11 1741584 1741606 -147041866 + GC_rich Low_complexity Low_complexity 1 22 0 236 217 0 0 chr11 1741848 1741894 -147041578 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1742397 1742485 -147040987 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1744369 1744429 -147039043 - MIR SINE MIR -62 146 86 260 185 0 0 chr11 1745127 1745181 -147038291 - L2 LINE L2 -265 3048 2995 225 363 26 0 chr11 1745319 1745432 -147038040 - L2 LINE L2 -670 2644 2529 191 355 26 0 chr11 1745542 1745618 -147037854 - L2 LINE L2 -953 2361 2284 211 243 27 40 chr11 1748773 1748847 -147034625 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1749963 1750008 -147033464 + (TG)n Simple_repeat Simple_repeat 1 45 0 1547 149 58 0 chr11 1753420 1753681 -147029791 - AluJb SINE Alu -20 292 17 350 256 87 23 chr11 1753761 1753933 -147029539 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1754317 1754490 -147028982 + MIR SINE MIR 27 221 -41 1099 81 0 69 chr11 1755641 1755814 -147027658 + AluY SINE Alu 1 161 -150 256 198 10 10 chr11 1755829 1755925 -147027547 + (CA)n Simple_repeat Simple_repeat 2 97 0 239 333 21 0 chr11 1757323 1757419 -147026053 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1757557 1757846 -147025626 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1759045 1759174 -147024298 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1761187 1761274 -147022198 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1763357 1763412 -147020060 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1763702 1763768 -147019704 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1763807 1763844 -147019628 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1764159 1764203 -147019269 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1764293 1764343 -147019129 + GC_rich Low_complexity Low_complexity 1 50 0 376 354 112 29 chr11 1764841 1764932 -147018540 + HAL1 LINE L1 1004 1086 -1421 1498 177 75 17 chr11 1764932 1765226 -147018246 + AluJb SINE Alu 2 312 0 376 354 112 29 chr11 1765226 1765411 -147018061 + HAL1 LINE L1 1086 1303 -1204 398 318 41 72 chr11 1766578 1766662 -147016810 + L1ME4a LINE L1 1040 1125 -4996 764 186 0 0 chr11 1766662 1766786 -147016686 + FLAM_A SINE Alu 1 124 -9 398 318 41 72 chr11 1766786 1766802 -147016670 + L1ME4a LINE L1 1125 1140 -4981 1758 140 0 29 chr11 1766802 1767080 -147016392 + AluJo SINE Alu 19 288 -24 398 318 41 72 chr11 1767080 1767302 -147016170 + L1ME4a LINE L1 1140 6119 -2 196 354 13 0 chr11 1767738 1767817 -147015655 - MIR SINE MIR -84 124 45 202 259 37 0 chr11 1767926 1767980 -147015492 + GA-rich Low_complexity Low_complexity 1 56 0 1976 176 43 5 chr11 1768430 1768806 -147014666 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1769464 1769519 -147013953 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1770079 1770117 -147013355 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1771046 1771114 -147012358 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1773700 1774032 -147009440 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1774223 1774270 -147009202 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1774271 1774597 -147008875 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1774599 1774676 -147008796 - AluSp SINE Alu -181 132 56 674 150 33 0 chr11 1774677 1774797 -147008675 - MLT1A1 LTR MaLR -38 327 204 300 231 51 0 chr11 1774908 1774986 -147008486 + AluJ/FRAM SINE Alu 217 298 -4 2127 127 3 0 chr11 1774991 1775298 -147008174 + AluSp SINE Alu 2 309 -4 231 62 0 62 chr11 1775298 1775346 -147008126 - L1MC/D LINE L1 -478 5855 5811 262 305 169 17 chr11 1775373 1775668 -147007804 - L1MEd LINE L1 -4880 1239 900 2304 88 0 22 chr11 1775689 1776009 -147007463 - AluSq SINE Alu 0 313 1 227 277 72 0 chr11 1776131 1776214 -147007258 + L2 LINE L2 3225 3313 0 285 348 85 20 chr11 1776317 1776622 -147006850 - L1MEd LINE L1 -5581 538 214 240 195 11 46 chr11 1776631 1776718 -147006754 + CT-rich Low_complexity Low_complexity 3 86 0 943 183 9 163 chr11 1776841 1777190 -147006282 - MER82 DNA MER2_type -314 339 45 2244 97 0 25 chr11 1777299 1777618 -147005854 - AluSx SINE Alu -1 311 1 426 396 56 8 chr11 1777620 1777991 -147005481 - L1MEc LINE L1 -2946 3269 2100 1716 186 0 7 chr11 1778015 1778322 -147005150 + AluJb SINE Alu 1 305 -7 1707 119 43 61 chr11 1778358 1778703 -147004769 + THE1C LTR MaLR 1 339 -36 465 133 0 0 chr11 1778703 1778778 -147004694 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 263 313 0 30 chr11 1779693 1779792 -147003680 + CT-rich Low_complexity Low_complexity 4 99 0 210 250 9 18 chr11 1779792 1779904 -147003568 + C-rich Low_complexity Low_complexity 2 112 0 990 176 0 0 chr11 1780281 1780610 -147002862 + (ATG)n Simple_repeat Simple_repeat 1 329 0 383 146 0 0 chr11 1780610 1780665 -147002807 + (TGG)n Simple_repeat Simple_repeat 3 57 0 816 196 0 0 chr11 1780665 1780844 -147002628 + (ATG)n Simple_repeat Simple_repeat 1 179 0 187 294 59 0 chr11 1780949 1781000 -147002472 + L2 LINE L2 2653 2706 -608 304 246 100 9 chr11 1781662 1781772 -147001700 + MIR SINE MIR 31 150 -58 2877 89 91 0 chr11 1781899 1782316 -147001156 + L1PA13 LINE L1 5708 6162 -1 385 181 0 36 chr11 1782351 1782434 -147001038 - L1M3 LINE L1 -469 5714 5635 1097 110 7 0 chr11 1782585 1782740 -147000732 - AluSq SINE Alu -157 156 1 282 136 153 0 chr11 1782740 1782799 -147000673 - L1MA8 LINE L1 -185 6106 6039 245 167 0 0 chr11 1782800 1782854 -147000618 - L1M3 LINE L1 -537 5646 5593 933 72 8 0 chr11 1782895 1783020 -147000452 + AluSp/q SINE Alu 188 313 0 4915 155 38 21 chr11 1783025 1783205 -147000267 - L1MA8 LINE L1 -10 6281 6105 1954 109 38 0 chr11 1783205 1783498 -146999974 - AluSx SINE Alu -4 308 5 4915 155 38 21 chr11 1783498 1784481 -146998991 - L1MA8 LINE L1 -186 6105 5106 990 146 41 120 chr11 1784474 1784709 -146998763 - L1M3 LINE L1 -576 5607 5402 * 832 156 7 22 chr11 1784709 1784844 -146998628 - FLAM_C SINE Alu 0 133 1 990 146 41 120 chr11 1784844 1784924 -146998548 - L1M3 LINE L1 -781 5402 5317 1633 141 20 0 chr11 1785663 1785918 -146997554 - AluJo SINE Alu -35 277 18 213 218 18 0 chr11 1788236 1788291 -146995181 + (CAGCC)n Simple_repeat Simple_repeat 2 57 0 756 134 0 0 chr11 1791401 1791535 -146991937 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 977 134 6 0 chr11 1791550 1791722 -146991750 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 287 283 0 7 chr11 1793800 1793945 -146989527 + (CA)n Simple_repeat Simple_repeat 1 144 0 198 333 42 21 chr11 1794548 1794644 -146988828 + MIR SINE MIR 47 144 -64 904 224 97 21 chr11 1794820 1795212 -146988260 + MLT1C LTR MaLR 7 466 -1 464 293 67 67 chr11 1795889 1796264 -146987208 - MER113 DNA MER1_type? -83 438 64 660 264 42 10 chr11 1796975 1797186 -146986286 + MIR SINE MIR 42 261 -1 1523 150 24 53 chr11 1798568 1798671 -146984801 + MLT1B LTR MaLR 2 106 -284 995 9 0 0 chr11 1798671 1798802 -146984670 + L1PA5 LINE L1 6028 6158 0 1523 150 24 53 chr11 1798802 1799038 -146984434 + MLT1B LTR MaLR 106 332 -58 2334 94 7 0 chr11 1800431 1800739 -146982733 + AluSg SINE Alu 1 310 0 1694 163 34 3 chr11 1801428 1801722 -146981750 + AluJo SINE Alu 1 303 -9 913 223 35 1 chr11 1804316 1804654 -146978818 + MLT1B LTR MaLR 2 379 -11 244 276 134 39 chr11 1804913 1805040 -146978432 - MIR SINE MIR -103 159 21 229 301 11 21 chr11 1807978 1808071 -146975401 + G-rich Low_complexity Low_complexity 2 93 0 287 268 143 0 chr11 1808846 1808958 -146974514 - L3 LINE CR1 -108 1469 1342 245 316 22 22 chr11 1810767 1810906 -146972566 + L1MC5 LINE L1 5723 5861 -1947 771 111 0 0 chr11 1810926 1811034 -146972438 + AluSg/x SINE Alu 203 310 0 1177 272 68 53 chr11 1811057 1811730 -146971742 + L1MC5 LINE L1 6694 7376 -585 2222 113 7 0 chr11 1812028 1812338 -146971134 + AluSx SINE Alu 1 312 0 287 252 10 29 chr11 1812350 1812453 -146971019 + L1MC5 LINE L1 7701 7801 -160 296 206 17 39 chr11 1812604 1812784 -146970688 + GA-rich Low_complexity Low_complexity 3 178 0 900 205 65 0 chr11 1813526 1813741 -146969731 + L1MC2 LINE L1 6106 6334 -10 415 360 79 9 chr11 1813742 1813970 -146969502 + L1MCa LINE L1 1402 1645 -4781 1468 51 6 0 chr11 1813976 1814152 -146969320 + AluSp SINE Alu 1 177 -136 568 40 0 0 chr11 1814152 1814227 -146969245 + AluSp SINE Alu 228 302 -11 283 191 103 0 chr11 1814554 1814622 -146968850 + MIR SINE MIR 67 141 -121 2386 99 0 0 chr11 1815152 1815464 -146968008 - AluSx SINE Alu 0 312 1 320 308 50 33 chr11 1816811 1816931 -146966541 + MIR3 SINE MIR 58 179 -29 484 276 62 50 chr11 1819466 1819824 -146963648 + MER90 LTR ERV1 227 588 -26 198 0 0 0 chr11 1820271 1820293 -146963179 + (CAGC)n Simple_repeat Simple_repeat 3 24 0 2243 98 3 0 chr11 1821983 1822279 -146961193 - AluSp SINE Alu -16 297 1 1824 115 51 10 chr11 1822289 1822585 -146960887 - AluSx SINE Alu -2 310 3 269 133 0 0 chr11 1823703 1823748 -146959724 + MIR SINE MIR 113 157 -105 496 134 41 21 chr11 1823774 1823871 -146959601 + MER4A LTR ERV1 1 99 -565 1628 125 36 20 chr11 1823871 1824208 -146959264 + MER4A LTR ERV1 262 662 -2 3508 132 173 140 chr11 1824215 1825605 -146957867 + MER4A-int LTR ERV1 1 1435 -5163 193 279 54 78 chr11 1827552 1827681 -146955791 + L2 LINE L2 3123 3248 -24 399 254 78 14 chr11 1828775 1828917 -146954555 + MLT1D LTR MaLR 1 151 -354 188 294 71 12 chr11 1829480 1829565 -146953907 + L2 LINE L2 3100 3189 -83 593 325 41 26 chr11 1830074 1830415 -146953057 - L1MB7 LINE L1 -195 5989 5644 386 174 45 39 chr11 1830536 1830691 -146952781 + (CCCTG)n Simple_repeat Simple_repeat 5 160 0 214 257 29 57 chr11 1831081 1831151 -146952321 + MIR SINE MIR 82 149 -59 216 228 52 57 chr11 1831348 1831452 -146952020 + MIR SINE MIR 25 102 -106 2181 102 0 19 chr11 1831452 1831767 -146951705 + AluSx SINE Alu 1 309 -3 216 228 52 57 chr11 1831767 1831790 -146951682 + MIR SINE MIR 102 124 -84 265 302 125 0 chr11 1833418 1833514 -146949958 - L3 LINE CR1 -489 1088 981 1045 181 0 11 chr11 1834578 1834760 -146948712 - AluJo SINE Alu -132 180 1 2145 122 0 0 chr11 1834794 1835089 -146948383 + AluSx SINE Alu 1 295 -17 1877 113 11 11 chr11 1835090 1835364 -146948108 + AluY SINE Alu 2 275 -36 915 100 0 0 chr11 1835364 1835494 -146947978 + AluY SINE Alu 173 302 -9 2396 146 15 34 chr11 1835671 1835701 -146947771 - MER57A LTR ERV1 0 403 374 186 71 0 0 chr11 1835701 1835729 -146947743 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 110 7 11 chr11 1835733 1836014 -146947458 - AluSq SINE Alu -33 280 1 2396 146 15 34 chr11 1836014 1836389 -146947083 - MER57A LTR ERV1 -32 371 1 2238 99 3 6 chr11 1837183 1837497 -146945975 + AluSp SINE Alu 1 313 0 2088 97 3 14 chr11 1837678 1837966 -146945506 + AluSp SINE Alu 1 285 -28 228 67 0 0 chr11 1837966 1837996 -146945476 + (TA)n Simple_repeat Simple_repeat 2 31 0 2098 115 3 13 chr11 1838071 1838376 -146945096 - AluSq SINE Alu -11 302 1 507 65 0 13 chr11 1838376 1838453 -146945019 - MER4E LTR ERV1 -676 90 15 302 225 0 0 chr11 1839415 1839486 -146943986 - MER81 DNA DNA -6 108 38 332 253 75 71 chr11 1839509 1839784 -146943688 - MLT1C LTR MaLR -12 378 110 1814 147 0 14 chr11 1839799 1839961 -146943511 - AluJb SINE Alu -19 293 135 2305 108 0 0 chr11 1839961 1840266 -146943206 - AluSq SINE Alu -8 305 1 1814 147 0 14 chr11 1840266 1840396 -146943076 - AluJb SINE Alu -177 135 5 2122 121 0 10 chr11 1840547 1840853 -146942619 + AluSq SINE Alu 1 303 -10 2344 68 7 0 chr11 1841376 1841672 -146941800 - AluSc SINE Alu -11 298 1 1288 160 88 40 chr11 1841714 1841964 -146941508 + AluJb SINE Alu 39 300 -12 2146 102 0 7 chr11 1841964 1842251 -146941221 + AluSx SINE Alu 1 287 -25 244 0 0 0 chr11 1842251 1842278 -146941194 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 1111 224 154 16 chr11 1842293 1842677 -146940795 - L1MC4 LINE L1 -444 7598 7162 6127 77 48 6 chr11 1842852 1843779 -146939693 + MER4A-int LTR ERV1 1479 2450 -4148 1991 102 4 4 chr11 1843779 1844054 -146939418 + AluSg SINE Alu 19 293 -17 6127 77 48 6 chr11 1844054 1844102 -146939370 + MER4A-int LTR ERV1 2450 2495 -4103 1300 152 84 0 chr11 1844102 1844339 -146939133 - LTR8 LTR ERV1 -434 257 1 3539 133 83 52 chr11 1844342 1844979 -146938493 + MER4A-int LTR ERV1 2741 3416 -3182 2419 61 0 13 chr11 1844979 1845290 -146938182 - AluY SINE Alu -4 307 1 3539 133 83 52 chr11 1845290 1845570 -146937902 + MER4A-int LTR ERV1 3416 3686 -2912 * 16402 93 47 20 chr11 1845563 1846964 -146936508 + MER4A-int LTR ERV1 3836 5198 -1400 2394 88 0 0 chr11 1846964 1847272 -146936200 + AluSx SINE Alu 2 309 -3 16402 93 47 20 chr11 1847272 1848561 -146934911 + MER4A-int LTR ERV1 5198 6598 0 531 131 20 20 chr11 1848562 1848661 -146934811 + MER4A LTR ERV1 1 99 -565 1855 113 6 57 chr11 1848661 1848966 -146934506 + MER4A LTR ERV1 262 606 -58 2192 100 10 0 chr11 1848966 1849265 -146934207 - AluSx SINE Alu -10 302 1 1855 113 6 57 chr11 1849265 1849322 -146934150 + MER4A LTR ERV1 606 664 0 2142 116 0 3 chr11 1849407 1849708 -146933764 - AluSq SINE Alu -13 300 1 531 309 17 6 chr11 1850281 1850462 -146933010 + MER53 DNA DNA 1 183 -6 2239 80 17 3 chr11 1851451 1851750 -146931722 - AluSq SINE Alu -10 303 1 304 204 68 0 chr11 1851750 1851838 -146931634 + MER69 DNA AcHobo 2361 2454 -72 592 228 62 11 chr11 1852107 1852341 -146931131 + MLT1C LTR MaLR 72 373 -17 1132 265 73 0 chr11 1853655 1853968 -146929504 + MER58B DNA MER1_type 3 338 -3 285 307 39 39 chr11 1854139 1854266 -146929206 - MIR SINE MIR -33 229 103 631 236 56 15 chr11 1854453 1854648 -146928824 - MIR SINE MIR -45 217 15 194 239 65 76 chr11 1854841 1854933 -146928539 + L2 LINE L2 2883 2973 -299 414 57 0 0 chr11 1855185 1855238 -146928234 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1101 216 17 0 chr11 1855652 1855912 -146927560 + L1M4 LINE L1 5207 5470 -704 1276 86 0 56 chr11 1855912 1855937 -146927535 + AluY SINE Alu 118 143 -168 2366 41 3 7 chr11 1855937 1856232 -146927240 + AluY SINE Alu 17 310 -1 1276 86 0 56 chr11 1856232 1856403 -146927069 + AluY SINE Alu 143 303 -8 1170 179 20 99 chr11 1856407 1856709 -146926763 + L1M4 LINE L1 5479 5756 -418 423 261 131 8 chr11 1858991 1859121 -146924351 - MIR SINE MIR -100 162 17 187 262 0 0 chr11 1860539 1860581 -146922891 - MIR SINE MIR -63 145 104 217 325 25 0 chr11 1861020 1861100 -146922372 - MIR SINE MIR -119 143 62 830 145 6 23 chr11 1861704 1862014 -146921458 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 196 318 66 60 chr11 1863727 1863878 -146919594 + MIR SINE MIR 77 228 -34 215 160 80 0 chr11 1864762 1864812 -146918660 - L2 LINE L2 -191 3081 3028 186 293 121 32 chr11 1864914 1865071 -146918401 - L2 LINE L2 -168 3104 2934 504 315 63 10 chr11 1866745 1866965 -146916507 + MIR SINE MIR 1 234 -28 524 281 65 0 chr11 1869559 1869712 -146913760 - MLT1C LTR MaLR 0 467 305 371 234 32 11 chr11 1870476 1870570 -146912902 - MIR SINE MIR -72 190 95 194 280 32 11 chr11 1872936 1873029 -146910443 - L2 LINE L2 -182 3090 2996 2428 152 67 0 chr11 1873330 1873731 -146909741 - MSTA LTR MaLR 0 428 1 2198 75 0 7 chr11 1873990 1874283 -146909189 - AluY SINE Alu -20 291 1 1144 218 36 88 chr11 1874728 1875113 -146908359 + MLT1A1 LTR MaLR 1 365 0 181 274 78 0 chr11 1875137 1875188 -146908284 - L3 LINE CR1 -12 1565 1511 272 182 55 0 chr11 1875264 1875319 -146908153 - MER117 DNA MER1_type -82 115 58 377 382 66 5 chr11 1875360 1875572 -146907900 - L3 LINE CR1 -374 1203 979 201 331 60 8 chr11 1875827 1875949 -146907523 + MIR SINE MIR 18 150 -69 1574 145 3 74 chr11 1876411 1876735 -146906737 + AluJb SINE Alu 6 306 -6 2291 65 14 0 chr11 1877066 1877357 -146906115 - AluSx SINE Alu -17 295 1 3257 227 17 26 chr11 1877528 1878468 -146905004 - L1M3 LINE L1 -704 5479 4547 3622 141 16 18 chr11 1878552 1879182 -146904290 + L1PA16 LINE L1 5460 6088 -78 398 213 0 0 chr11 1879447 1879527 -146903945 + L1PA16 LINE L1 6079 6158 -8 1091 77 6 16 chr11 1879553 1879775 -146903697 + L1HS LINE L1 5988 6180 0 313 209 58 23 chr11 1879842 1879928 -146903544 - MLT1I LTR MaLR -40 369 281 1174 228 41 59 chr11 1880091 1880360 -146903112 + MLT1A2 LTR MaLR 1 264 -110 2290 109 124 16 chr11 1880360 1880746 -146902726 + MSTA LTR MaLR 1 428 0 1174 228 41 59 chr11 1880746 1880814 -146902658 + MLT1A2 LTR MaLR 264 332 -42 1188 152 0 15 chr11 1880856 1881054 -146902418 - AluJo SINE Alu -37 275 81 2121 128 0 0 chr11 1881107 1881404 -146902068 - AluSx SINE Alu -15 297 1 528 292 87 5 chr11 1881431 1881616 -146901856 - MER3 DNA MER1_type 0 209 10 784 213 96 0 chr11 1882121 1882309 -146901163 + MSTB1 LTR MaLR 6 211 -246 1419 166 7 50 chr11 1882324 1882626 -146900846 + AluJo SINE Alu 24 312 0 883 174 63 19 chr11 1882640 1882847 -146900625 + MSTB1 LTR MaLR 217 432 0 1631 209 29 24 chr11 1883754 1884132 -146899340 + Ricksha_c DNA DNA 70 449 -1597 5026 155 34 19 chr11 1884309 1885204 -146898268 + Ricksha_c DNA DNA 454 1361 -685 2730 62 6 3 chr11 1885207 1885561 -146897911 + THE1A LTR MaLR 1 355 0 3132 161 34 58 chr11 1885561 1885925 -146897547 + Ricksha_c DNA DNA 1353 1724 -1522 1887 149 0 10 chr11 1885925 1886221 -146897251 - AluSx SINE Alu -19 293 1 3132 161 34 58 chr11 1886221 1886405 -146897067 + Ricksha_c DNA DNA 1724 1883 -1363 1821 132 39 0 chr11 1886405 1886686 -146896786 + AluSx SINE Alu 1 292 -20 3132 161 34 58 chr11 1886686 1886839 -146896633 + Ricksha_c DNA DNA 1883 2038 0 4925 220 128 20 chr11 1886841 1887966 -146895506 - L1ME1 LINE L1 -21 6145 5142 219 69 0 0 chr11 1887966 1887995 -146895477 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4925 220 128 20 chr11 1887995 1889089 -146894383 - L1ME1 LINE L1 -1024 5142 3694 216 270 283 4 chr11 1889224 1889396 -146894076 - MIR SINE MIR -21 187 16 634 309 104 24 chr11 1889587 1890136 -146893336 + L2 LINE L2 2714 3299 -14 186 225 25 0 chr11 1890466 1890506 -146892966 + L2 LINE L2 3211 3251 -21 410 264 71 14 chr11 1890634 1890774 -146892698 + MIR SINE MIR 96 243 -19 233 255 10 0 chr11 1890807 1890905 -146892567 + (ATGGTG)n Simple_repeat Simple_repeat 6 104 0 * 865 162 6 6 chr11 1890890 1891069 -146892403 + (ATG)n Simple_repeat Simple_repeat 1 179 0 785 189 0 6 chr11 1891113 1891293 -146892179 + (ATG)n Simple_repeat Simple_repeat 1 179 0 519 189 13 26 chr11 1891306 1891459 -146892013 + (ATGGTG)n Simple_repeat Simple_repeat 2 152 0 2048 200 51 25 chr11 1891599 1892089 -146891383 - Charlie1b DNA MER1_type -4 519 17 2448 59 0 0 chr11 1892146 1892449 -146891023 + AluSx SINE Alu 1 303 -9 1589 188 27 60 chr11 1893336 1893782 -146889690 + MLT1C LTR MaLR 37 467 0 180 103 29 59 chr11 1895282 1895350 -146888122 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 325 325 65 56 chr11 1895710 1895941 -146887531 + MIR SINE MIR 21 253 -9 240 233 0 111 chr11 1896233 1896297 -146887175 + MIR SINE MIR 117 170 -92 2330 91 0 0 chr11 1896297 1896605 -146886867 + AluSg SINE Alu 1 308 -2 240 233 0 111 chr11 1896605 1896630 -146886842 + MIR SINE MIR 170 196 -66 436 276 17 17 chr11 1896947 1897088 -146886384 + MIR SINE MIR 104 243 -19 678 259 38 28 chr11 1897252 1897464 -146886008 - MER20 DNA MER1_type 0 219 6 282 333 16 40 chr11 1897655 1897781 -146885691 - MIR SINE MIR -51 211 89 228 367 28 0 chr11 1897893 1898002 -146885470 - MIR SINE MIR -102 160 49 25 0 0 0 chr11 1900000 1900025 -146883447 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 1900058 1900092 -146883380 + GC_rich Low_complexity Low_complexity 1 34 0 383 312 75 48 chr11 1902890 1903488 -146879984 + L2 LINE L2 2451 3073 -240 191 274 14 68 chr11 1905347 1905420 -146878052 + MIR3 SINE MIR 99 167 -41 248 217 50 0 chr11 1908335 1908395 -146875077 + MIR SINE MIR 82 144 -118 13294 78 3 22 chr11 2009584 2011334 -146772138 - L1P3 LINE L1 -4738 1723 8 358 179 60 12 chr11 2011341 2011425 -146772047 - MLT1B LTR MaLR -210 180 93 2367 34 41 0 chr11 2012091 2012385 -146771087 - AluY SINE Alu -5 306 1 40 21 0 0 chr11 2012390 2012437 -146771035 + AT_rich Low_complexity Low_complexity 1 47 0 259 268 63 39 chr11 2013193 2013320 -146770152 - HERVL LTR ERVL -3194 2460 2331 271 293 47 67 chr11 2014652 2014802 -146768670 + MIR SINE MIR 70 216 -46 1532 181 57 89 chr11 2015310 2015511 -146767961 + MER57A LTR ERV1 13 196 -207 1953 129 10 0 chr11 2015511 2015806 -146767666 + AluSx SINE Alu 1 298 -14 1532 181 57 89 chr11 2015806 2016008 -146767464 + MER57A LTR ERV1 196 403 0 206 289 36 12 chr11 2016013 2016096 -146767376 - MIR SINE MIR -130 132 48 2029 116 34 0 chr11 2016152 2016445 -146767027 - AluSx SINE Alu -9 303 1 253 310 177 0 chr11 2018555 2018668 -146764804 - MIR SINE MIR -51 211 79 1068 170 28 161 chr11 2019291 2019721 -146763751 + MER93b LTR ERV1 1 373 0 4903 86 7 18 chr11 2019763 2020316 -146763156 - L1PA11 LINE L1 -128 6046 5500 1972 91 62 0 chr11 2020316 2020592 -146762880 - AluSg SINE Alu -17 293 1 4903 86 7 18 chr11 2020592 2020712 -146762760 - L1PA11 LINE L1 -674 5500 5380 394 240 39 0 chr11 2020798 2020902 -146762570 + MER5A DNA MER1_type 76 183 -6 241 174 58 116 chr11 2021411 2021497 -146761975 + LTR48 LTR ERV1 703 783 -4 765 184 23 21 chr11 2021906 2022108 -146761364 + L1MA8 LINE L1 5966 6181 -124 188 303 28 46 chr11 2022371 2022480 -146760992 + MIR SINE MIR 35 141 -67 378 289 16 31 chr11 2022548 2022676 -146760796 - L2 LINE L2 -10 3262 3137 189 0 0 0 chr11 2022893 2022914 -146760558 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 322 319 89 32 chr11 2022914 2023071 -146760401 + MIR SINE MIR 49 214 -48 3522 105 8 12 chr11 2023642 2024157 -146759315 + LTR10D LTR ERV1 1 513 0 1981 138 3 0 chr11 2025040 2025345 -146758127 + AluSx SINE Alu 1 306 -6 302 289 26 46 chr11 2025852 2026004 -146757468 - MLT2F LTR ERVL -5 658 510 1206 258 141 37 chr11 2026022 2026473 -146756999 + MLT1E LTR MaLR 23 530 -63 2117 117 0 0 chr11 2026473 2026771 -146756701 - AluSx SINE Alu -14 298 1 1206 258 141 37 chr11 2026771 2026808 -146756664 + MLT1E LTR MaLR 530 562 -31 2312 84 0 3 chr11 2026858 2027168 -146756304 - AluY SINE Alu -2 309 1 2887 157 10 29 chr11 2027473 2027996 -146755476 - L1MA8 LINE L1 -159 6132 5620 2324 108 129 5 chr11 2028194 2028573 -146754899 - MSTA LTR MaLR -2 426 1 232 372 0 13 chr11 2028867 2028945 -146754527 + MIR3 SINE MIR 89 165 -43 435 139 13 0 chr11 2029084 2029163 -146754309 - MADE1 DNA Mariner 0 80 1 258 263 92 20 chr11 2031075 2031227 -146752245 - L1ME3 LINE L1 -91 6071 5909 1425 196 0 27 chr11 2032745 2033046 -146750426 + AluJb SINE Alu 1 293 -19 261 296 65 54 chr11 2034878 2035075 -146748397 - MIR SINE MIR -44 218 16 1410 154 32 0 chr11 2036814 2037035 -146746437 + MER30 DNA MER1_type 1 228 -2 578 280 118 26 chr11 2037524 2037828 -146745644 + L1ME2 LINE L1 5811 6142 -22 213 209 0 0 chr11 2037949 2037992 -146745480 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 493 282 99 41 chr11 2038355 2038699 -146744773 + L1ME1 LINE L1 5762 6125 -41 23 33 0 0 chr11 2038897 2038927 -146744545 + AT_rich Low_complexity Low_complexity 1 30 0 1508 165 15 4 chr11 2040589 2040862 -146742610 - AluJo SINE Alu -22 290 15 240 207 35 0 chr11 2041038 2041096 -146742376 + G-rich Low_complexity Low_complexity 5 64 0 231 114 0 0 chr11 2041105 2041140 -146742332 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 572 211 26 0 chr11 2041503 2041617 -146741855 + AluJo SINE Alu 90 206 -106 3370 203 85 34 chr11 2041641 2043382 -146740090 + L1MA8 LINE L1 4474 6291 0 1781 138 0 4 chr11 2043513 2043781 -146739691 - AluSx SINE Alu -45 267 1 2286 98 0 7 chr11 2044227 2044524 -146738948 - AluSx SINE Alu -13 299 5 28 0 0 0 chr11 2045524 2045552 -146737920 + AT_rich Low_complexity Low_complexity 1 28 0 1771 187 3 16 chr11 2045962 2046277 -146737195 - AluJo SINE Alu -1 311 1 3536 71 0 0 chr11 2046786 2047224 -146736248 - LTR21B LTR ERV1 0 438 1 1806 243 19 63 chr11 2047224 2047846 -146735626 - HERVFH21 LTR ERV1 0 6529 5935 20686 137 30 21 chr11 2047847 2051959 -146731513 - HERVFH21 LTR ERV1 -1791 4738 539 1794 200 60 25 chr11 2051953 2052498 -146730974 - HERVFH21 LTR ERV1 -5951 578 1 * 3478 58 11 0 chr11 2052499 2052932 -146730540 - LTR21B LTR ERV1 0 438 1 226 310 58 7 chr11 2055945 2056100 -146727372 + L1M4c LINE L1 1951 2113 -4917 764 261 67 71 chr11 2056135 2056386 -146727086 + L1M4c LINE L1 2013 2264 -4842 1790 181 0 10 chr11 2056386 2056678 -146726794 + AluJb SINE Alu 1 289 -23 764 261 67 71 chr11 2056678 2058148 -146725324 + L1M4c LINE L1 2264 3837 -3269 987 275 22 16 chr11 2058159 2058479 -146724993 + L1 LINE L1 4519 4840 -1306 237 363 6 0 chr11 2058512 2058669 -146724803 + L1M3 LINE L1 1684 1841 -5009 * 400 248 14 35 chr11 2058648 2058789 -146724683 + L1M3 LINE L1 2464 2601 -4248 567 208 32 8 chr11 2058796 2058921 -146724551 + FLAM_C SINE Alu 6 133 -10 897 265 123 33 chr11 2059115 2060107 -146723365 + L1M3 LINE L1 2493 3569 -3279 1847 230 111 36 chr11 2060152 2060587 -146722885 + L1M3 LINE L1 5246 5647 -1226 2594 51 0 22 chr11 2060587 2060902 -146722570 + AluY SINE Alu 1 308 -3 1847 230 111 36 chr11 2060902 2061408 -146722064 + L1M3 LINE L1 5647 6311 -562 1753 170 0 0 chr11 2061408 2061691 -146721781 + AluJb SINE Alu 15 297 -15 1847 230 111 36 chr11 2061691 2061918 -146721554 + L1M3 LINE L1 6311 6520 -353 2188 91 7 21 chr11 2062402 2062712 -146720760 + AluSp SINE Alu 2 307 0 269 271 21 21 chr11 2062834 2062930 -146720542 + L1MA9 LINE L1 3 98 -5857 485 275 8 0 chr11 2062940 2063060 -146720412 + FLAM_C SINE Alu 4 124 -19 259 297 0 0 chr11 2063060 2063124 -146720348 + L1MA9 LINE L1 92 155 -5800 * 1735 264 44 15 chr11 2063121 2063709 -146719763 + L1MA9 LINE L1 4463 5067 -967 310 240 53 0 chr11 2063772 2063847 -146719625 + MADE1 DNA Mariner 1 79 -1 2829 228 44 22 chr11 2063848 2064624 -146718848 + L1MA9 LINE L1 5378 6170 -30 434 165 1 3 chr11 2064674 2064780 -146718692 + L1MA4 LINE L1 5745 5849 -314 226 143 54 0 chr11 2064812 2064868 -146718604 - L1MCa LINE L1 -4362 2064 2006 254 364 0 0 chr11 2066680 2066779 -146716693 - MER5A DNA MER1_type -80 109 11 500 254 113 24 chr11 2066935 2067148 -146716324 + L1MC4 LINE L1 7278 7509 -533 1995 138 0 7 chr11 2067355 2067652 -146715820 - AluSx SINE Alu -16 296 2 246 300 100 27 chr11 2068631 2068781 -146714691 + MER5B DNA MER1_type 17 177 -1 1162 78 203 5 chr11 2070882 2071074 -146712398 + MER30 DNA MER1_type 1 230 0 2446 59 0 0 chr11 2072647 2072934 -146710538 + AluSx SINE Alu 1 287 -25 1179 280 19 24 chr11 2072938 2073310 -146710162 + MER93a LTR ERV1 7 376 -26 28 0 0 0 chr11 2073496 2073524 -146709948 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 2074048 2074072 -146709400 + AT_rich Low_complexity Low_complexity 1 24 0 819 263 103 0 chr11 2074196 2074477 -146708995 - MER33 DNA MER1_type -14 310 1 1368 234 119 66 chr11 2075022 2075384 -146708088 - MLT1H LTR MaLR 0 549 151 2640 98 0 3 chr11 2075384 2075740 -146707732 + THE1A LTR MaLR 1 355 0 1368 234 119 66 chr11 2075740 2075891 -146707581 - MLT1H LTR MaLR -398 151 9 237 269 37 37 chr11 2075935 2076043 -146707429 - MIR SINE MIR -97 111 4 413 269 46 29 chr11 2076576 2076751 -146706721 + MER5B DNA MER1_type 1 178 0 646 101 37 9 chr11 2076756 2076865 -146706607 - L1PA13 LINE L1 0 6163 6052 232 306 14 0 chr11 2076865 2076937 -146706535 + L2 LINE L2 3232 3304 -9 564 296 11 11 chr11 2077766 2077945 -146705527 - MIR SINE MIR -62 200 22 250 222 19 0 chr11 2077941 2077995 -146705477 - L2 LINE L2 0 3272 3218 * 266 299 28 75 chr11 2078168 2078224 -146705248 - MIR SINE MIR -49 213 156 2505 63 0 10 chr11 2078224 2078527 -146704945 + AluY SINE Alu 1 300 -11 266 299 28 75 chr11 2078527 2078684 -146704788 - MIR SINE MIR -106 156 10 297 278 85 46 chr11 2079739 2080020 -146703452 - HAL1 LINE L1 -1124 1383 1092 1160 186 11 76 chr11 2080046 2080321 -146703151 - L1MC1 LINE L1 0 6333 6077 329 280 119 0 chr11 2080624 2080767 -146702705 + L1P LINE L1 3725 3884 -2262 902 192 41 0 chr11 2081236 2081408 -146702064 - MSTD LTR MaLR 0 396 218 567 244 95 75 chr11 2081534 2081773 -146701699 + SATR1 Satellite Satellite 4 237 -687 2523 51 0 0 chr11 2081773 2082068 -146701404 + AluY SINE Alu 1 295 -16 567 244 95 75 chr11 2082068 2082389 -146701083 + SATR1 Satellite Satellite 237 778 -146 954 236 316 6 chr11 2082430 2083557 -146699915 + SATR1 Satellite Satellite 1 1476 -2 1063 218 187 53 chr11 2083581 2085365 -146698107 + SATR1 Satellite Satellite 1 2022 -404 2045 128 0 3 chr11 2087069 2087373 -146696099 + AluY SINE Alu 1 303 -8 195 250 81 81 chr11 2087431 2087567 -146695905 - L2 LINE L2 0 3272 3137 2093 120 0 19 chr11 2087929 2088245 -146695227 - AluSg SINE Alu 0 310 1 3391 208 17 63 chr11 2089177 2090193 -146693279 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr11 2090649 2090680 -146692792 + AT_rich Low_complexity Low_complexity 1 31 0 1244 225 15 44 chr11 2090700 2090953 -146692519 - L1MB3 LINE L1 -30 6153 5911 1962 153 0 7 chr11 2090953 2091247 -146692225 - AluSx SINE Alu -18 294 3 1244 225 15 44 chr11 2091247 2091335 -146692137 - L1MB3 LINE L1 -272 5911 5822 272 83 21 0 chr11 2091336 2091384 -146692088 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 8091 92 72 71 chr11 2091386 2092719 -146690753 + SVA Other Other 53 1386 0 709 228 41 15 chr11 2092737 2092957 -146690515 + MLT1C LTR MaLR 238 363 -2 2716 81 100 5 chr11 2093413 2093822 -146689650 + LTR7 LTR ERV1 1 448 -2 246 282 77 0 chr11 2094511 2094589 -146688883 + MLT1J2 LTR MaLR 252 335 -115 2009 133 3 0 chr11 2094969 2095278 -146688194 + AluSx SINE Alu 1 310 -2 1017 196 72 0 chr11 2096586 2096795 -146686677 + MER58A DNA MER1_type 1 224 0 231 353 0 0 chr11 2096992 2097060 -146686412 + L2 LINE L2 3153 3220 -52 1902 123 35 0 chr11 2097890 2098175 -146685297 + AluSx SINE Alu 5 299 -13 1974 128 24 0 chr11 2098556 2098852 -146684620 - AluSx SINE Alu -9 303 1 1779 119 32 11 chr11 2100125 2100410 -146683062 - AluSx SINE Alu -21 291 1 1899 101 4 14 chr11 2100488 2100797 -146682675 - AluSq SINE Alu 0 313 16 625 133 0 0 chr11 2100798 2100913 -146682559 + AluSg/x SINE Alu 198 309 0 431 73 176 0 chr11 2101448 2101516 -146681956 - MADE1 DNA Mariner 0 80 1 825 245 40 0 chr11 2102749 2102949 -146680523 - MER58A DNA MER1_type -16 208 1 2170 96 3 13 chr11 2105417 2105719 -146677753 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr11 2105720 2105762 -146677710 + (CA)n Simple_repeat Simple_repeat 1 42 0 1028 147 58 0 chr11 2105823 2106013 -146677459 - AluJo SINE Alu -6 306 106 1839 124 13 52 chr11 2106051 2106357 -146677115 - AluSx SINE Alu -11 301 8 1184 110 12 0 chr11 2106495 2106668 -146676804 + MER30 DNA MER1_type 1 175 -55 1317 151 5 0 chr11 2106786 2107005 -146676467 - AluJo SINE Alu -92 220 1 275 280 144 8 chr11 2107278 2107410 -146676062 + MIR SINE MIR 81 230 -32 247 254 15 15 chr11 2107568 2107635 -146675837 - MIR SINE MIR -115 147 81 628 314 74 0 chr11 2109402 2109631 -146673841 + L1MD2 LINE L1 5763 6008 -351 1782 128 45 14 chr11 2109688 2109844 -146673628 - AluSg SINE Alu -11 299 128 2198 104 3 0 chr11 2109844 2110143 -146673329 - AluSq SINE Alu -13 300 1 1782 128 45 14 chr11 2110143 2110274 -146673198 - AluSg SINE Alu -182 128 3 301 290 73 67 chr11 2110353 2110494 -146672978 - MIR SINE MIR -68 140 43 709 153 51 8 chr11 2110796 2110914 -146672558 + FLAM_A SINE Alu 4 126 -7 2050 132 3 0 chr11 2111413 2111717 -146671755 + AluSx SINE Alu 1 305 -7 510 275 194 14 chr11 2111729 2112096 -146671376 - LTR33A LTR ERVL -16 507 75 1990 141 0 0 chr11 2112991 2113288 -146670184 - AluSx SINE Alu -15 297 1 841 262 88 31 chr11 2114743 2115228 -146668244 + L2 LINE L2 2777 3312 -1 865 247 64 0 chr11 2115228 2115463 -146668009 - MIR SINE MIR 0 262 13 180 136 45 68 chr11 2115488 2115532 -146667940 + MIR SINE MIR 135 177 -85 413 253 88 50 chr11 2117732 2117914 -146665558 - L2 LINE L2 -3 3310 3122 2235 90 3 7 chr11 2118960 2119270 -146664202 - AluSq SINE Alu -4 309 1 1885 107 32 0 chr11 2119364 2119645 -146663827 - AluSc SINE Alu -19 290 1 1510 178 28 14 chr11 2120302 2120588 -146662884 + AluJo SINE Alu 1 290 -22 1442 192 27 72 chr11 2120608 2120761 -146662711 + MLT1C LTR MaLR 41 199 -268 1959 124 3 7 chr11 2120761 2121059 -146662413 + AluSx SINE Alu 1 297 -15 1442 192 27 72 chr11 2121059 2121306 -146662166 + MLT1C LTR MaLR 199 423 -44 2100 121 3 0 chr11 2121330 2121636 -146661836 - AluSq SINE Alu -6 307 1 1470 170 58 7 chr11 2121642 2121919 -146661553 - AluJo SINE Alu -21 291 1 538 164 95 9 chr11 2121920 2122036 -146661436 - MER45A DNA AcHobo -52 126 1 1454 176 127 0 chr11 2122816 2123083 -146660389 - AluJo SINE Alu -1 301 1 555 251 91 23 chr11 2124194 2124413 -146659059 - MIR SINE MIR 0 262 29 1331 185 46 73 chr11 2124575 2124877 -146658595 - AluJo SINE Alu -18 294 1 2016 126 7 10 chr11 2125075 2125385 -146658087 + AluSx SINE Alu 2 310 -2 2162 107 0 7 chr11 2126006 2126316 -146657156 - AluSx SINE Alu -4 308 1 1556 182 3 43 chr11 2126418 2126606 -146656866 - AluJb SINE Alu -1 311 140 1771 113 65 28 chr11 2126606 2126897 -146656575 - AluSx SINE Alu -10 302 1 1556 182 3 43 chr11 2126897 2127032 -146656440 - AluJb SINE Alu -172 140 1 1956 182 23 88 chr11 2127043 2127113 -146656359 - L1MB7 LINE L1 0 6184 6111 1774 157 3 10 chr11 2127113 2127413 -146656059 + AluJb SINE Alu 1 298 -14 1956 182 23 88 chr11 2127413 2127913 -146655559 - L1MB7 LINE L1 -73 6111 5651 4287 115 130 125 chr11 2128126 2129492 -146653980 - pTR5 LTR ERV1 0 2438 742 2349 156 46 11 chr11 2129492 2129929 -146653543 - MER66B LTR ERV1 -34 452 1 1453 172 0 16 chr11 2129929 2130179 -146653293 - AluJb SINE Alu -66 246 1 297 339 46 8 chr11 2130199 2130329 -146653143 + MIR SINE MIR 96 230 -32 1785 173 0 22 chr11 2130351 2130669 -146652803 - AluJo SINE Alu -1 311 1 183 167 0 0 chr11 2130808 2130850 -146652622 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2196 103 0 0 chr11 2130850 2131140 -146652332 - AluSx SINE Alu -22 290 1 550 286 14 0 chr11 2132017 2132164 -146651308 - MER104 DNA Tc2 -4 176 28 385 296 16 40 chr11 2132200 2132325 -146651147 + L1MC4 LINE L1 6582 6703 -1339 1402 157 0 67 chr11 2132339 2132450 -146651022 - AluJo SINE Alu -63 249 132 1910 161 0 0 chr11 2132450 2132748 -146650724 - AluSx SINE Alu -14 298 1 1402 157 0 67 chr11 2132748 2132903 -146650569 - AluJo SINE Alu -180 132 1 1086 101 0 0 chr11 2132998 2133146 -146650326 - AluSp/q SINE Alu -5 308 161 424 288 17 45 chr11 2133341 2133518 -146649954 + MLT1K LTR MaLR 98 269 -319 544 152 0 0 chr11 2133706 2133785 -146649687 + Alu SINE Alu 216 294 -17 1420 156 67 25 chr11 2133795 2134077 -146649395 + AluJo SINE Alu 1 294 -18 382 257 176 0 chr11 2134083 2134219 -146649253 + MIR SINE MIR 31 190 -72 965 217 69 0 chr11 2134857 2135074 -146648398 + LTR16A1 LTR ERVL 226 457 0 371 268 68 63 chr11 2135198 2135388 -146648084 + L2 LINE L2 3120 3310 -3 1966 155 0 3 chr11 2135446 2135756 -146647716 - AluSg SINE Alu -1 309 1 255 79 0 0 chr11 2136329 2136367 -146647105 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 161 0 0 chr11 2137564 2137626 -146645846 + GA-rich Low_complexity Low_complexity 1 62 0 739 266 99 9 chr11 2138449 2138682 -146644790 + MIR SINE MIR 3 256 -6 755 181 23 84 chr11 2138831 2138899 -146644573 - MER3 DNA MER1_type 0 209 138 2028 126 3 0 chr11 2138899 2139192 -146644280 + AluSx SINE Alu 1 294 -18 755 181 23 84 chr11 2139192 2139338 -146644134 - MER3 DNA MER1_type -71 138 8 3325 139 50 2 chr11 2139358 2139861 -146643611 - MER1A DNA MER1_type 0 527 1 2172 108 0 0 chr11 2139948 2140245 -146643227 - AluSq SINE Alu -16 297 1 575 314 24 24 chr11 2140269 2140479 -146642993 - MIR SINE MIR -45 217 8 337 284 74 0 chr11 2140829 2140924 -146642548 - L2 LINE L2 -12 3260 3159 458 275 8 15 chr11 2140978 2141109 -146642363 - MIR SINE MIR -54 208 79 2682 221 28 58 chr11 2141427 2142290 -146641182 - LTR5 LTR ERVK 0 969 133 9857 93 0 28 chr11 2242367 2243784 -146539688 + HERVH LTR ERV1 1537 2914 -4799 1374 94 5 15 chr11 2243884 2244087 -146539385 + AluY SINE Alu 104 304 -7 1665 154 20 24 chr11 2244174 2244472 -146539000 - AluJb SINE Alu -15 297 1 2030 141 0 10 chr11 2244476 2244788 -146538684 - AluSx SINE Alu -3 309 1 2316 73 0 3 chr11 2244795 2245095 -146538377 - AluY SINE Alu -12 299 1 496 212 66 15 chr11 2245145 2245282 -146538190 + L1ME2 LINE L1 5429 5572 -592 356 223 143 34 chr11 2245283 2245458 -146538014 + L1ME2 LINE L1 5695 5888 -276 1769 155 10 3 chr11 2245830 2246133 -146537339 + AluSx SINE Alu 6 310 -2 248 302 190 17 chr11 2246154 2246270 -146537202 + L3 LINE CR1 1286 1421 -156 2081 93 10 0 chr11 2246587 2246876 -146536596 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 2246973 2247002 -146536470 + AT_rich Low_complexity Low_complexity 1 29 0 870 171 158 10 chr11 2247141 2247438 -146536034 + Tigger2a DNA MER2_type 1 443 -1 1721 131 0 22 chr11 2247558 2247833 -146535639 + AluSx SINE Alu 1 269 -43 377 278 105 105 chr11 2247939 2248252 -146535220 - L2 LINE L2 -87 3185 2873 28 0 0 0 chr11 2248375 2248403 -146535069 + AT_rich Low_complexity Low_complexity 1 28 0 933 78 0 0 chr11 2248403 2248519 -146534953 - AluJb SINE Alu -194 118 3 252 278 213 9 chr11 2249625 2249733 -146533739 + MIR3 SINE MIR 51 180 -28 517 128 13 0 chr11 2250120 2250198 -146533274 - AluS SINE Alu -233 80 2 2021 252 26 6 chr11 2250198 2251193 -146532279 - L1MB3 LINE L1 -351 5832 4818 2084 97 3 3 chr11 2251238 2251538 -146531934 + AluSp SINE Alu 1 300 -13 1254 225 3 72 chr11 2251622 2251824 -146531648 - L1MA4 LINE L1 -175 6125 5961 1593 167 0 4 chr11 2251824 2252105 -146531367 - AluSx SINE Alu -32 280 1 1254 225 3 72 chr11 2252105 2252288 -146531184 - L1MA4 LINE L1 -339 5961 5767 278 259 105 35 chr11 2252326 2252469 -146531003 + HsTC2 DNA Tc2 1631 1783 -115 245 86 0 0 chr11 2252474 2252509 -146530963 + Alu SINE Alu 1 35 -266 1501 147 10 48 chr11 2252638 2252931 -146530541 - AluJo SINE Alu -8 304 23 360 299 215 49 chr11 2254363 2254688 -146528784 - L2 LINE L2 -2 3311 2933 4091 156 61 20 chr11 2255054 2255079 -146528393 + L1MB7 LINE L1 5142 5165 -1019 2350 88 0 0 chr11 2255079 2255386 -146528086 + AluSp SINE Alu 1 307 -6 4091 156 61 20 chr11 2255386 2256211 -146527261 + L1MB7 LINE L1 5165 6027 -157 2141 116 3 0 chr11 2256211 2256522 -146526950 - AluSx SINE Alu 0 312 1 4091 156 61 20 chr11 2256522 2256600 -146526872 + L1MB7 LINE L1 6027 6100 -84 1328 108 0 5 chr11 2256754 2256939 -146526533 - AluSx SINE Alu -128 184 1 625 230 103 118 chr11 2256941 2257280 -146526192 - L2 LINE L2 -12 3260 2927 1969 135 3 3 chr11 2258229 2258541 -146524931 - AluSx SINE Alu 0 312 1 785 189 0 0 chr11 2258543 2258675 -146524797 - FLAM_A SINE Alu -1 132 1 249 200 71 12 chr11 2259548 2259633 -146523839 - MIR SINE MIR -79 183 94 206 270 30 50 chr11 2259632 2259732 -146523740 + L2 LINE L2 2311 2408 -906 * 195 298 39 10 chr11 2259984 2260088 -146523384 + L2 LINE L2 2888 2994 -278 265 244 39 13 chr11 2260099 2260177 -146523295 + L2 LINE L2 3229 3308 -5 355 313 52 82 chr11 2260222 2260490 -146522982 + MIR SINE MIR 3 262 0 200 258 153 48 chr11 2261241 2261365 -146522107 - MIR3 SINE MIR -31 177 41 2330 62 3 7 chr11 2262018 2262323 -146521149 - AluY SINE Alu -7 304 1 1797 106 8 0 chr11 2262634 2262888 -146520584 + AluSq SINE Alu 52 307 -6 722 157 17 0 chr11 2262888 2263003 -146520469 - AluJo/FLAM SINE Alu -194 118 2 362 267 46 36 chr11 2263067 2263234 -146520238 + MIR SINE MIR 21 183 -62 221 333 50 17 chr11 2263566 2263686 -146519786 + L2 LINE L2 2930 3053 -219 320 273 13 0 chr11 2266106 2266183 -146517289 - MIR3 SINE MIR -5 203 126 182 270 32 16 chr11 2266492 2266555 -146516917 + MIR SINE MIR 108 171 -91 191 364 26 0 chr11 2267861 2267938 -146515534 + MIR SINE MIR 34 112 -150 1018 136 21 21 chr11 2268026 2268043 -146515429 + AluSg/x SINE Alu 118 134 -176 2145 112 16 0 chr11 2268043 2268348 -146515124 + AluSq SINE Alu 1 310 -3 1018 136 21 21 chr11 2268348 2268521 -146514951 + AluSg/x SINE Alu 133 308 -2 329 193 148 34 chr11 2268522 2268610 -146514862 - L1MC4 LINE L1 -1339 6703 6606 441 141 39 0 chr11 2268611 2268689 -146514783 - L1MB7 LINE L1 -84 6100 6020 940 439 90 4 chr11 2268689 2268967 -146514505 + AluJb SINE Alu 1 302 0 358 239 97 9 chr11 2269164 2269277 -146514195 + MER5B DNA MER1_type 50 172 -6 744 218 46 0 chr11 2269382 2269579 -146513893 - MER6B DNA MER2_type 0 210 5 1278 128 27 14 chr11 2271472 2271691 -146511781 + AluSq SINE Alu 1 222 -91 838 231 280 3 chr11 2271695 2272024 -146511448 + SATR1 Satellite Satellite 48 467 -3 2037 181 99 24 chr11 2272054 2272861 -146510611 + SATR1 Satellite Satellite 1 866 -93 2922 104 12 2 chr11 2272890 2273314 -146510158 - Tigger1 DNA MER2_type -1404 1014 587 1245 165 5 5 chr11 2273314 2273532 -146509940 + AluJo SINE Alu 1 218 -94 522 176 11 11 chr11 2273532 2273623 -146509849 + AluJb SINE Alu 84 174 -138 448 195 46 0 chr11 2273637 2273724 -146509748 + Tigger1 DNA MER2_type 501 591 -1827 424 115 33 0 chr11 2273724 2273785 -146509687 - Alu SINE Alu -16 296 234 583 68 0 0 chr11 2273791 2273864 -146509608 + AluSg/x SINE Alu 176 248 -62 1121 177 9 19 chr11 2273864 2273915 -146509557 + AluJo SINE Alu 85 135 -177 2343 86 0 6 chr11 2273915 2274228 -146509244 + AluY SINE Alu 1 311 0 1121 177 9 19 chr11 2274228 2274391 -146509081 + AluJo SINE Alu 135 297 -15 478 220 0 0 chr11 2274392 2274483 -146508989 - Tigger1 DNA MER2_type -1827 591 501 1251 143 37 0 chr11 2274600 2274789 -146508683 - Tigger1 DNA MER2_type -1944 474 279 1083 177 80 17 chr11 2274816 2275053 -146508419 + AluJo SINE Alu 44 295 -17 1542 153 38 11 chr11 2275053 2275314 -146508158 - Tigger1 DNA MER2_type -2127 291 24 301 284 183 24 chr11 2275514 2275683 -146507789 - MIR3 SINE MIR -10 198 3 399 308 17 17 chr11 2276153 2276273 -146507199 + L2 LINE L2 3192 3311 -2 351 230 14 0 chr11 2276295 2276369 -146507103 + MER94 DNA DNA 1 75 -59 237 335 7 20 chr11 2277263 2277415 -146506057 + CT-rich Low_complexity Low_complexity 2 151 0 410 289 59 48 chr11 2278059 2278246 -146505226 + MIR SINE MIR 59 247 -15 223 339 99 6 chr11 2278362 2278533 -146504939 + L2 LINE L2 2168 2354 -960 1140 148 31 10 chr11 2278601 2278797 -146504675 - AluJo SINE Alu -112 200 1 2121 67 34 17 chr11 2279218 2279515 -146503957 + AluY SINE Alu 1 302 -9 1589 173 7 0 chr11 2279613 2279884 -146503588 - AluJo SINE Alu -39 273 1 191 293 43 0 chr11 2280001 2280055 -146503417 - MIR SINE MIR -104 104 48 216 237 46 118 chr11 2280235 2280387 -146503085 - MIR SINE MIR -69 193 53 28 29 0 0 chr11 2280740 2280775 -146502697 + AT_rich Low_complexity Low_complexity 1 35 0 264 325 18 61 chr11 2282562 2282676 -146500796 - MIR SINE MIR -81 127 19 295 269 181 40 chr11 2282833 2282982 -146500490 - L2 LINE L2 -184 3088 2919 670 149 116 25 chr11 2283069 2283190 -146500282 - FLAM_C SINE Alu 0 133 2 316 352 56 16 chr11 2283270 2283395 -146500077 + L2 LINE L2 3139 3268 -4 278 208 19 0 chr11 2283471 2283524 -146499948 - L2 LINE L2 -11 3261 3208 1422 103 43 47 chr11 2283576 2283810 -146499662 + AluSg SINE Alu 64 296 -14 309 321 73 73 chr11 2283811 2284029 -146499443 - MIR SINE MIR -22 240 23 1867 150 0 7 chr11 2284441 2284741 -146498731 + AluSx SINE Alu 7 304 -8 10374 149 61 65 chr11 2285434 2286140 -146497332 - Tigger1 DNA MER2_type 0 2418 1711 1606 166 17 20 chr11 2286140 2286442 -146497030 - AluJb SINE Alu -9 303 3 10374 149 61 65 chr11 2286442 2286655 -146496817 - Tigger1 DNA MER2_type -707 1711 1499 1671 156 3 7 chr11 2286655 2286937 -146496535 - AluJb SINE Alu -31 281 1 10374 149 61 65 chr11 2286937 2288442 -146495030 - Tigger1 DNA MER2_type -919 1499 1 23 0 0 0 chr11 2288541 2288564 -146494908 + AT_rich Low_complexity Low_complexity 1 23 0 2015 116 10 0 chr11 2289142 2289434 -146494038 - AluSp SINE Alu -18 295 1 299 73 0 0 chr11 2290832 2290873 -146492599 - Alu SINE Alu -5 297 257 418 238 0 10 chr11 2290910 2291011 -146492461 - L1MA10 LINE L1 -30 6304 6205 1651 142 33 11 chr11 2291017 2291292 -146492180 + AluSx SINE Alu 6 286 -26 1152 191 9 26 chr11 2291314 2291544 -146491928 - AluJb SINE Alu -86 226 1 1316 196 19 16 chr11 2291544 2291861 -146491611 - L1M4 LINE L1 -842 5304 4987 512 251 23 51 chr11 2291865 2292080 -146491392 + L1M4 LINE L1 3170 3378 -2768 802 61 0 0 chr11 2292090 2292188 -146491284 + AluY SINE Alu 1 98 -220 539 122 71 0 chr11 2292219 2292317 -146491155 + L1MB3 LINE L1 5338 5442 -728 * 695 117 39 36 chr11 2292314 2292433 -146491039 + L1MB3 LINE L1 6027 6135 -45 2145 71 29 35 chr11 2292433 2292743 -146490729 + AluY SINE Alu 1 308 -3 695 117 39 36 chr11 2292743 2292789 -146490683 + L1MB3 LINE L1 6135 6179 -1 1816 109 0 0 chr11 2292823 2293070 -146490402 + AluSx SINE Alu 1 247 -65 2138 81 3 11 chr11 2293177 2293481 -146489991 + AluSx SINE Alu 2 303 0 213 232 0 0 chr11 2293813 2293882 -146489590 + (TTCA)n Simple_repeat Simple_repeat 3 71 0 592 239 149 12 chr11 2293894 2294149 -146489323 - L1MC4 LINE L1 0 8042 7753 235 155 86 0 chr11 2294157 2294215 -146489257 - L1MCa LINE L1 -4358 2068 2006 317 315 0 22 chr11 2294221 2294310 -146489162 + L1MC4 LINE L1 6617 6703 -1339 * 339 310 23 0 chr11 2294282 2294369 -146489103 - L1MC4 LINE L1 -1339 6703 6615 2083 98 3 0 chr11 2294369 2294664 -146488808 - AluSg SINE Alu -14 296 1 1489 249 179 15 chr11 2294666 2295250 -146488222 - L1MC4 LINE L1 -282 7760 7047 2229 113 0 0 chr11 2295250 2295560 -146487912 - AluSx SINE Alu -2 310 1 1489 249 179 15 chr11 2295560 2295655 -146487817 - L1MC4 LINE L1 -995 7047 6969 2113 111 7 0 chr11 2295705 2296003 -146487469 - AluSx SINE Alu -12 300 1 1830 155 4 4 chr11 2296023 2296301 -146487171 - AluJb SINE Alu -12 300 23 262 326 165 25 chr11 2296575 2296811 -146486661 - L2 LINE L2 -185 3087 2819 1699 154 82 4 chr11 2297229 2297509 -146485963 - AluJb SINE Alu -8 304 3 422 276 96 82 chr11 2297866 2297921 -146485551 + L2 LINE L2 2569 2622 -650 2034 148 0 3 chr11 2297921 2298212 -146485260 - AluSx SINE Alu -22 290 1 422 276 96 82 chr11 2298212 2298633 -146484839 + L2 LINE L2 2622 3070 -202 849 135 0 64 chr11 2298685 2298826 -146484646 - FLAM_C SINE Alu -11 132 1 376 254 118 0 chr11 2298880 2298990 -146484482 + L2 LINE L2 3191 3313 0 263 280 0 13 chr11 2301346 2301421 -146482051 + (CTCA)n Simple_repeat Simple_repeat 2 75 0 2478 66 0 7 chr11 2302975 2303278 -146480194 - AluY SINE Alu -10 301 1 1131 142 12 0 chr11 2305443 2305612 -146477860 - AluSg/x SINE Alu -8 302 132 2353 100 0 3 chr11 2305612 2305912 -146477560 - AluSx SINE Alu -7 305 7 307 288 0 0 chr11 2305915 2305988 -146477484 + MIR SINE MIR 51 123 -139 261 275 14 0 chr11 2306070 2306139 -146477333 + L3 LINE CR1 1494 1563 -14 1873 104 107 4 chr11 2308142 2308422 -146475050 + AluSg1 SINE Alu 1 309 0 2537 59 0 0 chr11 2308779 2309068 -146474404 + AluSc SINE Alu 1 289 -20 1655 205 109 17 chr11 2309399 2309819 -146473653 - LTR2B LTR ERV1 0 490 32 415 315 129 4 chr11 2310550 2310791 -146472681 - L2 LINE L2 -83 3189 2919 193 370 59 0 chr11 2311036 2311155 -146472317 - L2 LINE L2 -565 2749 2624 236 200 0 0 chr11 2311696 2311741 -146471731 - L2 LINE L2 -2 3270 3226 1161 145 31 110 chr11 2311754 2311881 -146471591 + L1MA10 LINE L1 6042 6177 -157 195 42 0 0 chr11 2311881 2311905 -146471567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2117 100 14 11 chr11 2311914 2312224 -146471248 + AluSp SINE Alu 1 311 0 2028 143 6 16 chr11 2312229 2312544 -146470928 + AluSx SINE Alu 1 312 0 1161 145 31 110 chr11 2312544 2312717 -146470755 + L1MA10 LINE L1 6189 6334 0 2288 66 5 2 chr11 2312824 2313182 -146470290 + LTR7 LTR ERV1 1 448 -2 10108 95 3 10 chr11 2313184 2314657 -146468815 + HERVH LTR ERV1 1 1462 -6251 717 36 0 0 chr11 2314757 2314841 -146468631 + LTR7 LTR ERV1 365 448 -2 269 367 9 0 chr11 2314883 2314992 -146468480 + L2 LINE L2 2420 2529 -785 643 282 68 19 chr11 2316551 2316914 -146466558 - LTR16C LTR ERVL -2 489 52 325 286 91 26 chr11 2317018 2317172 -146466300 - MLT1K LTR MaLR -326 262 99 2432 92 0 3 chr11 2317259 2317564 -146465908 - AluSq SINE Alu -9 304 1 1309 138 0 96 chr11 2317579 2317686 -146465786 - AluJo SINE Alu -77 235 119 306 0 0 0 chr11 2317686 2317720 -146465752 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1989 96 4 0 chr11 2317726 2317977 -146465495 - AluSx SINE Alu -25 287 36 1309 138 0 96 chr11 2317977 2318122 -146465350 - AluJo SINE Alu -198 114 1 204 164 0 55 chr11 2318206 2318261 -146465211 - L2 LINE L2 -930 2384 2333 2146 131 0 0 chr11 2318623 2318920 -146464552 + AluJo SINE Alu 1 297 -15 402 282 74 31 chr11 2318922 2319382 -146464090 + L1ME4a LINE L1 5437 5905 -216 2290 108 3 16 chr11 2319382 2319698 -146463774 + AluSx SINE Alu 1 312 0 292 205 16 0 chr11 2320471 2320544 -146462928 - MIR SINE MIR -66 142 80 2514 68 0 10 chr11 2322821 2323128 -146460344 - AluSq SINE Alu -9 304 1 420 254 79 0 chr11 2323477 2323607 -146459865 + MIR3 SINE MIR 28 168 -40 282 264 104 110 chr11 2323811 2323893 -146459579 - MIR SINE MIR -75 187 106 2417 64 4 0 chr11 2323893 2324209 -146459263 + AluSp SINE Alu 1 317 0 282 264 104 110 chr11 2324209 2324307 -146459165 - MIR SINE MIR -156 106 7 1162 0 50 6 chr11 2324333 2324492 -146458980 + (CATCT)n Simple_repeat Simple_repeat 5 170 0 355 254 67 8 chr11 2324534 2324655 -146458817 - MIR SINE MIR -82 126 21 1444 146 0 0 chr11 2324929 2325135 -146458337 - AluJo SINE Alu -21 291 86 609 118 0 11 chr11 2325148 2325241 -146458231 - HY4 scRNA scRNA 0 93 2 334 274 45 57 chr11 2325901 2326058 -146457414 + L2 LINE L2 3031 3185 -87 1025 167 0 0 chr11 2326334 2326484 -146456988 - AluJo SINE Alu -76 236 87 555 140 0 11 chr11 2326496 2326589 -146456883 - HY4 scRNA scRNA 0 93 2 1156 178 130 0 chr11 2326590 2326837 -146456635 + MLT2B3 LTR ERVL 43 321 -233 513 243 15 7 chr11 2328198 2328334 -146455138 + MIR SINE MIR 126 262 0 261 233 48 101 chr11 2329412 2329562 -146453910 + MER34B LTR ERV1 322 462 -103 2438 74 0 0 chr11 2329562 2329858 -146453614 + AluY SINE Alu 1 296 -15 261 233 48 101 chr11 2329858 2329896 -146453576 + MER34B LTR ERV1 462 500 -65 207 302 223 0 chr11 2330821 2330960 -146452512 + MIR SINE MIR 77 246 -16 292 284 67 37 chr11 2331808 2331942 -146451530 + L1ME1 LINE L1 6000 6137 -29 2245 123 0 0 chr11 2332349 2332649 -146450823 - AluSx SINE Alu -12 300 1 602 206 30 0 chr11 2332703 2332834 -146450638 + FLAM_C SINE Alu 1 135 -8 595 101 20 20 chr11 2332842 2332941 -146450531 + U13 snRNA snRNA 6 104 0 828 155 101 54 chr11 2332972 2333140 -146450332 + FRAM SINE Alu 1 170 -6 1844 98 117 4 chr11 2333143 2333408 -146450064 + AluSg1 SINE Alu 3 297 -12 566 228 0 0 chr11 2334372 2334486 -146448986 - FLAM_C SINE Alu -27 116 3 1091 83 0 0 chr11 2334744 2334877 -146448595 + AluSq/x SINE Alu 1 133 -179 2267 114 7 0 chr11 2334886 2335194 -146448278 + AluSq SINE Alu 1 310 -3 2410 100 0 0 chr11 2335255 2335556 -146447916 + AluY SINE Alu 1 301 -10 611 202 0 17 chr11 2335568 2335687 -146447785 + AluJ SINE Alu 6 122 -190 997 193 0 0 chr11 2335805 2335966 -146447506 + AluJ SINE Alu 129 289 -23 2060 147 3 0 chr11 2336706 2337006 -146446466 + AluSq SINE Alu 1 301 -12 1957 158 0 0 chr11 2337018 2337297 -146446175 + AluSx SINE Alu 3 281 -31 2224 119 6 3 chr11 2337323 2337634 -146445838 + AluSx SINE Alu 1 312 0 878 135 14 21 chr11 2337927 2338068 -146445404 + FLAM_C SINE Alu 1 140 -3 2095 119 3 34 chr11 2338325 2338645 -146444827 + AluSq SINE Alu 1 310 -3 375 286 140 76 chr11 2338851 2339207 -146444265 + L1ME4a LINE L1 5743 6121 0 2497 80 10 0 chr11 2339246 2339548 -146443924 + AluSq SINE Alu 1 305 -8 805 122 0 43 chr11 2339687 2339796 -146443676 + AluJo/FLAM SINE Alu 1 104 -198 2371 87 0 0 chr11 2339796 2340084 -146443388 - AluSc SINE Alu -20 289 2 805 122 0 43 chr11 2340084 2340113 -146443359 + AluJo/FLAM SINE Alu 104 133 -169 215 255 0 0 chr11 2340114 2340165 -146443307 - MIR SINE MIR -65 143 93 315 228 206 15 chr11 2340709 2340845 -146442627 + MIR SINE MIR 1 162 -100 1653 88 5 0 chr11 2340847 2341051 -146442421 + AluSx SINE Alu 9 213 -99 815 174 158 10 chr11 2341295 2341592 -146441880 + Tigger2a DNA MER2_type 1 443 -1 2098 128 0 20 chr11 2341712 2342017 -146441455 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr11 2342281 2342308 -146441164 + AT_rich Low_complexity Low_complexity 1 27 0 2032 138 0 10 chr11 2342308 2342605 -146440867 - AluSx SINE Alu -18 294 1 1058 164 6 0 chr11 2342887 2343052 -146440420 + AluSg/x SINE Alu 124 289 -20 1648 176 68 56 chr11 2343091 2343218 -146440254 - Charlie1 DNA MER1_type -349 2412 2288 2081 112 30 3 chr11 2343218 2343513 -146439959 - AluSx SINE Alu -9 303 1 1648 176 68 56 chr11 2343513 2343696 -146439776 - Charlie1 DNA MER1_type -473 2288 2093 1941 137 0 11 chr11 2343696 2344009 -146439463 - AluSx SINE Alu 0 312 14 1648 176 68 56 chr11 2344009 2344141 -146439331 - Charlie1 DNA MER1_type -668 2093 1964 2501 87 0 0 chr11 2344141 2344452 -146439020 - AluY SINE Alu 0 311 1 2253 114 3 0 chr11 2344490 2344787 -146438685 - AluSg SINE Alu -12 298 1 1202 141 5 5 chr11 2344787 2344985 -146438487 - AluYa5 SINE Alu -1 310 113 218 204 0 0 chr11 2345219 2345263 -146438209 + L2 LINE L2 3270 3313 0 344 98 33 0 chr11 2345341 2345402 -146438070 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 2386 88 0 7 chr11 2345412 2345718 -146437754 + AluSg SINE Alu 1 304 -6 2298 112 0 6 chr11 2345734 2346048 -146437424 + AluSq SINE Alu 2 313 0 734 216 6 28 chr11 2346053 2346229 -146437243 + MIR SINE MIR 91 262 0 2629 50 0 0 chr11 2346243 2346543 -146436929 + AluY SINE Alu 1 300 -11 2064 109 3 21 chr11 2346547 2346832 -146436640 + AluSx SINE Alu 3 310 0 253 0 0 0 chr11 2346832 2346860 -146436612 + (TAAA)n Simple_repeat Simple_repeat 1 128 0 228 163 0 0 chr11 2346929 2346972 -146436500 + T-rich Low_complexity Low_complexity 1 43 0 280 291 103 8 chr11 2347563 2347680 -146435792 + MIR SINE MIR 18 145 -63 2464 61 3 13 chr11 2347699 2347875 -146435597 - AluY SINE Alu -3 308 135 2335 84 10 3 chr11 2347875 2348173 -146435299 - AluSx SINE Alu -12 300 1 2464 61 3 13 chr11 2348173 2348307 -146435165 - AluY SINE Alu -176 135 1 2098 137 0 0 chr11 2348308 2348608 -146434864 - AluSx SINE Alu -12 300 1 2047 140 0 0 chr11 2348678 2348971 -146434501 - AluSx SINE Alu -19 293 1 2255 104 0 16 chr11 2349565 2349881 -146433591 - AluSx SINE Alu -1 311 1 208 221 233 0 chr11 2350050 2350136 -146433336 - MIR SINE MIR -1 261 156 1204 172 9 9 chr11 2350136 2350357 -146433115 - AluSg/x SINE Alu -7 305 85 680 384 0 0 chr11 2350457 2350608 -146432864 + C-rich Low_complexity Low_complexity 1 151 0 455 237 12 12 chr11 2350647 2350816 -146432656 + C-rich Low_complexity Low_complexity 1 169 0 24 32 0 0 chr11 2351343 2351374 -146432098 + AT_rich Low_complexity Low_complexity 1 31 0 306 79 0 4 chr11 2352522 2352737 -146430735 + AluSc SINE Alu 1 302 0 2111 109 44 7 chr11 2353704 2353997 -146429475 - AluSx SINE Alu -8 304 1 2423 86 0 6 chr11 2354122 2354435 -146429037 - AluY SINE Alu 0 311 1 2834 155 65 6 chr11 2354436 2354946 -146428526 - L1MB2 LINE L1 -41 6130 5591 373 264 51 34 chr11 2355225 2355363 -146428109 + MER102b DNA MER1_type 12 151 -190 1751 154 13 33 chr11 2355370 2355675 -146427797 - AluJo SINE Alu -13 299 1 528 316 123 35 chr11 2355924 2356329 -146427143 - L2 LINE L2 0 3272 2832 306 84 0 4 chr11 2358094 2358309 -146425163 + AluSc SINE Alu 1 301 0 2095 110 45 7 chr11 2359277 2359568 -146423904 - AluSx SINE Alu -10 302 1 2247 89 0 7 chr11 2359693 2359985 -146423487 - AluY SINE Alu 0 311 22 929 188 218 4 chr11 2360028 2360262 -146423210 + AluSg1 SINE Alu 1 284 -25 324 0 0 0 chr11 2360300 2360336 -146423136 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr11 2360335 2360359 -146423113 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 494 262 81 62 chr11 2361146 2361206 -146422266 - MIR SINE MIR -30 232 175 2247 104 3 7 chr11 2361206 2361505 -146421967 - AluSg SINE Alu -12 298 1 494 262 81 62 chr11 2361505 2361654 -146421818 - MIR SINE MIR -87 175 19 29 28 0 0 chr11 2361805 2361841 -146421631 + AT_rich Low_complexity Low_complexity 1 36 0 776 182 0 0 chr11 2361856 2361977 -146421495 - FLAM_C SINE Alu -22 121 1 1444 196 17 24 chr11 2362714 2363010 -146420462 + AluJo SINE Alu 2 295 -17 269 336 73 0 chr11 2363488 2363598 -146419874 + L2 LINE L2 3145 3262 -10 1823 127 0 68 chr11 2363857 2364181 -146419291 + AluSx SINE Alu 1 302 -10 1531 118 111 80 chr11 2365455 2365744 -146417728 + AluSx SINE Alu 1 298 -14 2146 137 3 3 chr11 2365808 2366114 -146417358 + AluSp SINE Alu 1 306 -7 37 0 0 0 chr11 2366272 2366309 -146417163 + AT_rich Low_complexity Low_complexity 1 37 0 183 200 100 0 chr11 2366799 2366849 -146416623 + MER5B DNA MER1_type 1 55 -123 849 223 46 65 chr11 2366858 2367118 -146416354 + AluJo SINE Alu 1 255 -57 218 382 18 0 chr11 2367134 2367244 -146416228 + MER5B DNA MER1_type 50 161 -17 2302 103 0 3 chr11 2367246 2367558 -146415914 + AluSx SINE Alu 1 311 -1 532 269 46 64 chr11 2367595 2367814 -146415658 + MER102b DNA MER1_type 127 341 0 1964 163 0 0 chr11 2367868 2368168 -146415304 + AluSx SINE Alu 1 300 -12 597 172 114 41 chr11 2368377 2368585 -146414887 - MIR SINE MIR -10 252 42 1940 125 35 3 chr11 2369690 2369979 -146413493 + AluSx SINE Alu 1 298 -14 2322 86 0 0 chr11 2370102 2370394 -146413078 + AluSc SINE Alu 1 292 -17 1859 103 52 7 chr11 2370711 2370982 -146412490 + AluSq SINE Alu 1 283 -30 180 0 0 0 chr11 2370985 2371005 -146412467 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2041 125 3 7 chr11 2371054 2371359 -146412113 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr11 2371403 2371432 -146412040 + AT_rich Low_complexity Low_complexity 1 29 0 279 280 112 0 chr11 2371433 2371540 -146411932 + MIR SINE MIR 65 183 -79 1106 154 8 9 chr11 2371892 2372158 -146411314 - AluJb SINE Alu 0 312 2 1849 121 11 21 chr11 2372160 2372473 -146410999 - AluSc SINE Alu 0 310 1 1796 226 49 23 chr11 2372814 2373287 -146410185 + Charlie1a DNA MER1_type 2 486 -969 2432 71 0 0 chr11 2373289 2373585 -146409887 - AluY SINE Alu -15 296 1 1199 164 110 82 chr11 2373725 2374017 -146409455 + AluSx SINE Alu 13 312 0 2113 136 7 3 chr11 2374088 2374389 -146409083 + AluSx SINE Alu 1 302 -10 183 369 0 15 chr11 2374463 2374528 -146408944 + L2 LINE L2 3189 3252 -20 850 138 32 0 chr11 2375530 2375653 -146407819 + FLAM_C SINE Alu 1 127 -16 1079 192 14 23 chr11 2375691 2375910 -146407562 + AluJo SINE Alu 1 217 -95 1419 69 0 6 chr11 2376066 2376241 -146407231 + L1PA3 LINE L1 5974 6147 -8 245 330 0 31 chr11 2376337 2376434 -146407038 + MER5B DNA MER1_type 4 97 -81 1523 164 34 27 chr11 2377219 2377512 -146405960 + AluSx SINE Alu 1 295 -17 28 48 0 0 chr11 2377830 2377872 -146405600 + AT_rich Low_complexity Low_complexity 1 42 0 1612 191 0 4 chr11 2379697 2379974 -146403498 + AluJo SINE Alu 1 276 -36 5020 190 86 90 chr11 2380819 2381033 -146402439 - L1MB3 LINE L1 -174 6009 5796 480 104 15 0 chr11 2381033 2381100 -146402372 - U6 snRNA snRNA 0 107 40 5020 190 86 90 chr11 2381100 2381414 -146402058 - L1MB3 LINE L1 -387 5796 5482 1774 146 43 0 chr11 2381414 2381694 -146401778 - AluSg SINE Alu -18 292 1 5020 190 86 90 chr11 2381694 2381852 -146401620 - L1MB3 LINE L1 -701 5482 5325 1258 164 48 106 chr11 2381852 2382164 -146401308 - AluJo SINE Alu -14 298 5 5020 190 86 90 chr11 2382164 2382685 -146400787 - L1MB3 LINE L1 -858 5325 4804 1678 183 3 10 chr11 2382685 2382974 -146400498 + AluJb SINE Alu 1 287 -25 5020 190 86 90 chr11 2382974 2383272 -146400200 - L1MB3 LINE L1 -1379 4804 4507 1898 118 35 14 chr11 2383272 2383559 -146399913 - AluSx SINE Alu -19 293 1 5020 190 86 90 chr11 2383559 2384506 -146398966 - L1MB3 LINE L1 -1676 4507 3474 2232 129 3 0 chr11 2384515 2384825 -146398647 + AluSq SINE Alu 1 311 -2 190 130 0 43 chr11 2384829 2384875 -146398597 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 300 154 0 0 chr11 2384878 2384930 -146398542 - L1MB3 LINE L1 -2679 3467 3416 2301 102 0 0 chr11 2385099 2385439 -146398033 + AluSq SINE Alu 1 340 0 1549 177 53 14 chr11 2385541 2385824 -146397648 - AluJo SINE Alu -16 296 3 21 0 0 0 chr11 2385883 2385904 -146397568 + AT_rich Low_complexity Low_complexity 1 21 0 1538 169 59 0 chr11 2385969 2386266 -146397206 + AluJb SINE Alu 1 313 0 374 267 23 46 chr11 2386932 2387063 -146396409 - MIR SINE MIR -1 261 134 27 0 0 0 chr11 2387163 2387190 -146396282 + AT_rich Low_complexity Low_complexity 1 27 0 284 79 0 0 chr11 2387273 2387311 -146396161 - MER4E LTR ERV1 -75 691 654 295 247 105 57 chr11 2387315 2387562 -146395910 + L1ME4a LINE L1 5688 5946 -175 2034 132 6 19 chr11 2387574 2387885 -146395587 + AluSq SINE Alu 1 307 -6 1873 130 41 3 chr11 2387934 2388226 -146395246 + AluSx SINE Alu 1 303 -9 1024 167 36 50 chr11 2389235 2389456 -146394016 - AluJb SINE Alu -13 299 82 426 228 44 9 chr11 2389472 2389586 -146393886 + L1M4 LINE L1 2653 2770 -3376 718 270 48 89 chr11 2389691 2390202 -146393270 + L1M4 LINE L1 3085 3567 -2579 1291 177 106 39 chr11 2390202 2390485 -146392987 - AluJo SINE Alu -8 304 3 718 270 48 89 chr11 2390485 2390603 -146392869 + L1M4 LINE L1 3567 3688 -2458 360 207 94 47 chr11 2390603 2390730 -146392742 + FLAM_A SINE Alu 15 131 -2 392 296 8 8 chr11 2390834 2390966 -146392506 + L1MC4 LINE L1 6898 7029 -1013 703 195 9 0 chr11 2391010 2391123 -146392349 + FLAM_C SINE Alu 6 119 -24 1649 178 14 3 chr11 2391166 2391458 -146392014 + AluJo SINE Alu 1 295 -17 3400 259 59 18 chr11 2391466 2391877 -146391595 - L2 LINE L2 -248 3065 2672 2264 99 0 13 chr11 2391877 2392190 -146391282 + AluY SINE Alu 1 309 -2 3400 259 59 18 chr11 2392190 2392846 -146390626 - L2 LINE L2 -641 2672 1950 1584 154 46 39 chr11 2392859 2393165 -146390307 + AluJo SINE Alu 1 308 -4 2000 127 38 0 chr11 2393383 2393674 -146389798 + AluSx SINE Alu 1 302 -10 2020 124 3 26 chr11 2393781 2394087 -146389385 - AluSx SINE Alu -13 299 1 617 174 9 28 chr11 2394137 2394246 -146389226 + AluJb SINE Alu 195 301 -11 261 130 143 26 chr11 2394316 2394393 -146389079 + L1ME4a LINE L1 5994 6079 -42 2108 127 10 0 chr11 2394408 2394708 -146388764 + AluSx SINE Alu 1 303 -9 26 64 0 0 chr11 2394725 2394772 -146388700 + AT_rich Low_complexity Low_complexity 1 47 0 1386 138 51 0 chr11 2395169 2395386 -146388086 - MER46A DNA MER2_type 0 236 9 1119 114 0 6 chr11 2395521 2395679 -146387793 + AluSg/x SINE Alu 132 288 -22 1711 188 65 48 chr11 2396462 2396733 -146386739 - L1MB7 LINE L1 -18 6166 5884 2099 134 0 0 chr11 2396733 2397031 -146386441 - AluSq SINE Alu -11 302 5 1711 188 65 48 chr11 2397031 2397175 -146386297 - L1MB7 LINE L1 -300 5884 5744 198 200 73 55 chr11 2397267 2397322 -146386150 + L2 LINE L2 3222 3277 -36 2232 101 10 0 chr11 2397458 2397755 -146385717 - AluSq SINE Alu -12 301 2 305 308 149 34 chr11 2397836 2398044 -146385428 - MIR SINE MIR -21 241 10 304 322 49 0 chr11 2398101 2398207 -146385265 + MIR SINE MIR 34 148 -63 665 148 157 0 chr11 2398208 2398323 -146385149 + FLAM_C SINE Alu 1 133 0 32 43 0 0 chr11 2398749 2398795 -146384677 + AT_rich Low_complexity Low_complexity 1 46 0 353 276 35 55 chr11 2398903 2399102 -146384370 + L1ME LINE L1 5290 5484 -758 378 0 0 0 chr11 2399172 2399214 -146384258 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr11 2399257 2399286 -146384186 + (TG)n Simple_repeat Simple_repeat 2 30 0 1410 182 4 30 chr11 2399364 2399500 -146383972 - AluJb SINE Alu -50 262 135 207 0 0 0 chr11 2399500 2399523 -146383949 + (TG)n Simple_repeat Simple_repeat 2 24 0 1410 182 4 30 chr11 2399523 2399655 -146383817 - AluJb SINE Alu -177 135 1 277 239 62 54 chr11 2399727 2399799 -146383673 + L1ME LINE L1 5698 5773 -348 1644 130 115 4 chr11 2399799 2400069 -146383403 + AluSx SINE Alu 1 300 -12 277 239 62 54 chr11 2400069 2400126 -146383346 + L1ME LINE L1 5773 5828 -293 180 0 0 0 chr11 2400745 2400765 -146382707 + (A)n Simple_repeat Simple_repeat 1 20 0 2307 98 0 7 chr11 2400767 2401073 -146382399 + AluY SINE Alu 1 304 -7 180 0 0 0 chr11 2401511 2401531 -146381941 + (A)n Simple_repeat Simple_repeat 1 20 0 1868 157 10 3 chr11 2401925 2402230 -146381242 + AluSx SINE Alu 6 312 0 235 312 185 25 chr11 2402248 2402405 -146381067 + L3 LINE CR1 1286 1467 -110 2091 111 10 0 chr11 2402681 2402970 -146380502 - AluSx SINE Alu -20 292 1 2564 244 149 13 chr11 2402971 2403917 -146379555 - L1M4 LINE L1 -1598 4548 3474 2232 129 3 0 chr11 2403926 2404236 -146379236 + AluSq SINE Alu 1 311 -2 190 130 0 43 chr11 2404240 2404286 -146379186 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 300 154 0 0 chr11 2404289 2404341 -146379131 - L1M4 LINE L1 -2679 3467 3416 2301 102 0 0 chr11 2404510 2404850 -146378622 + AluSq SINE Alu 1 340 0 240 35 0 0 chr11 2405426 2405455 -146378017 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1507 204 18 4 chr11 2405459 2405733 -146377739 - AluJb SINE Alu -34 278 1 546 187 19 0 chr11 2406093 2406200 -146377272 + FLAM_A SINE Alu 33 141 -1 207 69 0 0 chr11 2406505 2406534 -146376938 + (A)n Simple_repeat Simple_repeat 1 29 0 336 24 0 0 chr11 2406640 2406681 -146376791 + (TG)n Simple_repeat Simple_repeat 1 41 0 1891 136 0 7 chr11 2407088 2407367 -146376105 + AluSq SINE Alu 1 277 -36 258 156 0 0 chr11 2407367 2407412 -146376060 + GA-rich Low_complexity Low_complexity 1 45 0 1551 96 0 5 chr11 2407726 2407925 -146375547 + AluY SINE Alu 104 301 -10 261 172 23 58 chr11 2407939 2408026 -146375446 - MER113 DNA MER1_type? -435 86 3 2156 123 0 23 chr11 2408030 2408339 -146375133 + AluSg SINE Alu 1 302 -8 327 295 86 49 chr11 2408422 2408666 -146374806 + HAL1 LINE L1 2236 2488 -19 349 325 49 18 chr11 2409088 2409251 -146374221 + MIR SINE MIR 88 255 -7 367 273 136 8 chr11 2409251 2409383 -146374089 - MIR SINE MIR -100 162 14 23 33 0 0 chr11 2409414 2409444 -146374028 + AT_rich Low_complexity Low_complexity 1 30 0 617 204 74 0 chr11 2409902 2410010 -146373462 - FLAM_A SINE Alu -17 116 1 2583 68 3 0 chr11 2410246 2410553 -146372919 + AluSp SINE Alu 1 308 -5 2261 101 3 3 chr11 2410889 2411197 -146372275 + AluSx SINE Alu 1 308 -4 315 312 96 25 chr11 2411217 2411374 -146372098 + MIR3 SINE MIR 27 194 -14 1892 147 7 3 chr11 2411487 2411773 -146371699 + AluJb SINE Alu 14 300 -12 205 250 0 31 chr11 2411945 2412009 -146371463 - MIR SINE MIR -41 221 160 2301 91 10 0 chr11 2412083 2412379 -146371093 + AluSx SINE Alu 4 302 -10 1226 157 114 0 chr11 2412385 2412621 -146370851 + Tigger7 DNA MER2_type 2224 2486 -1 271 116 23 0 chr11 2412624 2412667 -146370805 - MIR SINE MIR -63 145 102 719 173 0 0 chr11 2412904 2413008 -146370464 - AluJb SINE Alu -13 299 196 956 179 0 6 chr11 2413031 2413219 -146370253 - FRAM SINE Alu 0 176 1 305 336 104 8 chr11 2413236 2413361 -146370111 + L2 LINE L2 3136 3272 0 363 23 0 0 chr11 2413807 2413851 -146369621 + (TG)n Simple_repeat Simple_repeat 2 45 0 659 224 195 9 chr11 2413981 2414191 -146369281 + MIR SINE MIR 14 262 0 586 211 0 24 chr11 2414550 2414673 -146368799 - L2 LINE L2 -2 3311 3192 188 33 0 33 chr11 2414779 2414809 -146368663 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1991 126 3 21 chr11 2414822 2415107 -146368365 - AluSx SINE Alu -32 280 1 350 163 128 0 chr11 2415109 2415195 -146368277 + MIR SINE MIR 112 208 -54 243 264 0 0 chr11 2415234 2415287 -146368185 - MIR SINE MIR -155 107 55 2381 100 3 0 chr11 2415579 2415890 -146367582 + AluSx SINE Alu 1 312 0 2020 138 7 3 chr11 2416042 2416346 -146367126 + AluSq SINE Alu 1 305 -8 2084 97 38 3 chr11 2416346 2416634 -146366838 + AluSx SINE Alu 1 298 -14 241 290 123 22 chr11 2417040 2417141 -146366331 - MIR SINE MIR -5 257 137 1788 186 3 3 chr11 2417141 2417452 -146366020 - AluJo SINE Alu -1 311 1 241 290 123 22 chr11 2417452 2417488 -146365984 - MIR SINE MIR -125 137 106 691 246 0 0 chr11 2417521 2417647 -146365825 - FLAM_A SINE Alu -7 126 1 214 338 196 0 chr11 2417653 2417786 -146365686 + L2 LINE L2 3106 3264 -8 239 261 185 25 chr11 2418255 2418374 -146365098 - L2 LINE L2 -14 3258 3121 281 309 132 0 chr11 2418469 2418605 -146364867 - MIR3 SINE MIR -10 198 45 2384 105 0 0 chr11 2418613 2418919 -146364553 - AluSc SINE Alu -3 306 1 788 183 15 8 chr11 2419367 2419498 -146363974 + FLAM_A SINE Alu 1 132 -1 195 281 67 11 chr11 2419731 2419820 -146363652 - L2 LINE L2 -160 3112 3019 1143 153 35 83 chr11 2419884 2420075 -146363397 + MER33 DNA MER1_type 13 185 -2400 2363 95 3 0 chr11 2420075 2420381 -146363091 + AluSg SINE Alu 1 307 -3 1143 153 35 83 chr11 2420381 2420502 -146362970 + MER33 DNA MER1_type 185 310 -14 1890 138 0 0 chr11 2420517 2420792 -146362680 + AluSx SINE Alu 1 275 -37 243 289 106 10 chr11 2420939 2421043 -146362429 - MIR SINE MIR -56 206 93 276 273 64 55 chr11 2421068 2421178 -146362294 + L2 LINE L2 3160 3270 -2 314 286 114 71 chr11 2421375 2421630 -146361842 + L1M2 LINE L1 834 1099 -5750 1589 119 171 4 chr11 2422653 2422904 -146360568 + AluSg1 SINE Alu 1 293 -16 751 104 0 0 chr11 2422932 2423028 -146360444 + AluSq/x SINE Alu 41 136 -177 2819 19 0 0 chr11 2423396 2423706 -146359766 + AluYb8 SINE Alu 1 310 -8 1892 107 21 11 chr11 2423712 2424012 -146359460 + AluSq SINE Alu 1 303 0 308 287 151 12 chr11 2424214 2424465 -146359007 + L1ME LINE L1 5501 5786 -335 1106 191 109 4 chr11 2424535 2424765 -146358707 - AluJb SINE Alu -58 254 1 486 263 116 13 chr11 2424868 2424993 -146358479 + MER112 DNA MER1_type 1 112 -148 1343 221 13 39 chr11 2424993 2425305 -146358167 - AluJo SINE Alu -8 304 1 486 263 116 13 chr11 2425305 2425411 -146358061 + MER112 DNA MER1_type 112 256 -4 2251 94 3 0 chr11 2425446 2425744 -146357728 + AluSp SINE Alu 1 299 -14 1577 199 0 0 chr11 2425946 2426237 -146357235 + AluJo SINE Alu 1 291 -21 1853 108 123 0 chr11 2426265 2426525 -146356947 + AluSg SINE Alu 1 292 -8 1996 132 4 0 chr11 2426605 2426923 -146356549 + AluSx SINE Alu 1 319 0 1959 121 3 70 chr11 2428002 2428333 -146355139 + AluSx SINE Alu 1 309 -3 2081 131 13 0 chr11 2428514 2428820 -146354652 + AluSg SINE Alu 1 310 0 2004 154 0 0 chr11 2429027 2429333 -146354139 + AluSx SINE Alu 1 306 -6 1843 141 3 36 chr11 2429544 2429850 -146353622 + AluSx SINE Alu 3 298 -14 2134 113 0 3 chr11 2430052 2430344 -146353128 + AluSg1 SINE Alu 1 291 -18 1804 105 0 0 chr11 2430864 2431092 -146352380 - AluSx SINE Alu -84 228 1 308 302 224 34 chr11 2431498 2431766 -146351706 - HAL1 LINE L1 -766 1741 1423 1839 138 22 0 chr11 2432028 2432304 -146351168 + AluJb SINE Alu 1 282 -30 212 0 36 0 chr11 2432309 2432337 -146351135 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2373 100 0 0 chr11 2432339 2432639 -146350833 + AluSq SINE Alu 2 301 -12 721 201 13 13 chr11 2432706 2432855 -146350617 + MER106A DNA MER1_type 33 181 -55 2283 92 0 13 chr11 2432857 2433172 -146350300 + AluY SINE Alu 1 311 0 1907 113 0 0 chr11 2433328 2433584 -146349888 + AluSq SINE Alu 5 260 -53 287 61 41 0 chr11 2433595 2433644 -146349828 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1981 115 14 21 chr11 2434136 2434445 -146349027 + AluSx SINE Alu 1 307 0 240 128 0 0 chr11 2434521 2434560 -146348912 + L1ME4a LINE L1 6060 6098 -23 900 220 36 0 chr11 2434661 2434829 -146348643 - FAM SINE Alu -1 174 1 403 151 0 0 chr11 2434858 2434911 -146348561 + Alu SINE Alu 2 54 -255 200 106 15 61 chr11 2434933 2434999 -146348473 + (CAAAAA)n Simple_repeat Simple_repeat 1 63 0 1474 200 79 10 chr11 2435818 2436153 -146347319 + L1MB7 LINE L1 5817 6177 -7 1756 139 18 14 chr11 2436166 2436299 -146347173 + AluSx SINE Alu 1 132 -181 2140 74 7 11 chr11 2436299 2436619 -146346853 + AluSg SINE Alu 1 319 0 1756 139 18 14 chr11 2436619 2436796 -146346676 + AluSx SINE Alu 132 313 0 2231 97 0 39 chr11 2436935 2437243 -146346229 - AluSq SINE Alu -17 296 1 288 301 192 13 chr11 2437956 2438112 -146345360 - MIR SINE MIR -30 232 49 1810 122 70 0 chr11 2438390 2438660 -146344812 - AluSx SINE Alu -23 289 1 3503 176 113 47 chr11 2438800 2439406 -146344066 - L1MB7 LINE L1 0 6184 5619 2188 99 10 3 chr11 2439406 2439700 -146343772 - AluSg SINE Alu -14 296 1 3503 176 113 47 chr11 2439700 2440018 -146343454 - L1MB7 LINE L1 -565 5619 5323 936 213 6 6 chr11 2440018 2440187 -146343285 - FAM SINE Alu -6 169 1 3503 176 113 47 chr11 2440187 2440340 -146343132 - L1MB7 LINE L1 -861 5323 5182 2193 122 0 7 chr11 2440340 2440643 -146342829 + AluSx SINE Alu 1 301 -11 3503 176 113 47 chr11 2440643 2440915 -146342557 - L1MB7 LINE L1 -1002 5182 4929 1665 173 10 10 chr11 2440915 2441216 -146342256 + AluJb SINE Alu 1 301 -11 3503 176 113 47 chr11 2441216 2441230 -146342242 - L1MB7 LINE L1 -1255 4929 4917 2169 126 3 3 chr11 2441230 2441540 -146341932 + AluSx SINE Alu 1 310 -2 3503 176 113 47 chr11 2441540 2441599 -146341873 - L1MB7 LINE L1 -1267 4917 4663 715 214 81 39 chr11 2441592 2441782 -146341690 - L1MB7 LINE L1 -2162 3984 3781 * 2105 120 7 0 chr11 2441782 2442083 -146341389 - AluSg SINE Alu -7 303 1 715 214 81 39 chr11 2442083 2442126 -146341346 - L1MB7 LINE L1 -2365 3781 3741 1853 143 37 14 chr11 2442149 2442443 -146341029 - AluSx SINE Alu -11 301 1 242 286 13 91 chr11 2442817 2442962 -146340510 - MIR3 SINE MIR -52 156 22 2429 77 0 0 chr11 2442962 2443260 -146340212 + AluY SINE Alu 1 298 -13 222 128 0 0 chr11 2443575 2443614 -146339858 + (A)n Simple_repeat Simple_repeat 1 39 0 1421 196 3 35 chr11 2443965 2444276 -146339196 + AluJo SINE Alu 1 301 -11 816 151 0 0 chr11 2444301 2444420 -146339052 + FRAM SINE Alu 50 168 -8 1028 174 117 68 chr11 2444466 2444585 -146338887 + AluJb SINE Alu 1 113 -199 2089 119 3 7 chr11 2444585 2444879 -146338593 + AluSg1 SINE Alu 1 293 -16 1028 174 117 68 chr11 2444879 2444890 -146338582 + AluJb SINE Alu 113 122 -190 1825 117 80 4 chr11 2444890 2445164 -146338308 + AluSq SINE Alu 6 300 -13 1028 174 117 68 chr11 2445164 2445296 -146338176 + AluJb SINE Alu 122 277 -35 243 0 0 0 chr11 2445309 2445336 -146338136 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 258 32 0 0 chr11 2445370 2445401 -146338071 + (TG)n Simple_repeat Simple_repeat 2 32 0 635 262 116 66 chr11 2445586 2445678 -146337794 + L2 LINE L2 2458 2544 -769 2087 150 7 0 chr11 2445678 2445985 -146337487 - AluSx SINE Alu -3 309 1 635 262 116 66 chr11 2445985 2446568 -146336904 + L2 LINE L2 2544 3222 -91 190 0 32 32 chr11 2447055 2447086 -146336386 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 324 158 174 31 chr11 2447251 2447358 -146336114 + L1ME3A LINE L1 5790 5910 -260 1880 152 14 0 chr11 2447360 2447650 -146335822 + AluSg SINE Alu 3 296 -14 1059 162 6 6 chr11 2447650 2447829 -146335643 + AluSg/x SINE Alu 134 312 0 1508 184 60 14 chr11 2447942 2448224 -146335248 + AluJb SINE Alu 1 295 -17 2254 105 0 43 chr11 2448940 2449263 -146334209 + AluSg SINE Alu 1 309 -1 2034 100 64 0 chr11 2449265 2449546 -146333926 + AluSx SINE Alu 1 299 -13 2254 114 0 19 chr11 2450070 2450387 -146333085 + AluSq SINE Alu 1 311 -2 2111 136 0 10 chr11 2450944 2451246 -146332226 - AluJb SINE Alu -10 302 4 2340 81 0 29 chr11 2451307 2451616 -146331856 - AluY SINE Alu -11 300 1 2476 82 0 0 chr11 2452167 2452470 -146331002 + AluSg SINE Alu 2 304 -6 2548 74 0 3 chr11 2452742 2453054 -146330418 + AluY SINE Alu 1 311 0 319 308 63 57 chr11 2453128 2453287 -146330185 + MER117 DNA MER1_type 38 197 0 21 0 0 0 chr11 2454156 2454177 -146329295 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 2454329 2454354 -146329118 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 2454633 2454654 -146328818 + AT_rich Low_complexity Low_complexity 1 21 0 1523 115 115 63 chr11 2455405 2455692 -146327780 - AluSg SINE Alu -8 302 1 1539 191 13 7 chr11 2455943 2456241 -146327231 + AluJb SINE Alu 1 300 -12 2427 77 3 0 chr11 2456252 2456550 -146326922 + AluSp SINE Alu 1 299 -14 1107 86 0 14 chr11 2456738 2456877 -146326595 + AluSq/x SINE Alu 1 137 -175 356 266 69 58 chr11 2456901 2457074 -146326398 - MER5B DNA MER1_type -1 177 3 2148 100 0 39 chr11 2457154 2457464 -146326008 + AluY SINE Alu 14 311 0 1605 196 0 50 chr11 2457546 2457690 -146325782 + AluJb SINE Alu 1 151 -161 1796 123 0 0 chr11 2457690 2457925 -146325547 + AluSx SINE Alu 1 235 -77 1605 196 0 50 chr11 2457925 2458102 -146325370 + AluJb SINE Alu 151 306 -6 259 262 0 0 chr11 2458197 2458258 -146325214 + L1MC5 LINE L1 7830 7890 -71 198 0 0 0 chr11 2458643 2458665 -146324807 + (TTCTC)n Simple_repeat Simple_repeat 3 24 0 210 37 0 0 chr11 2459852 2459879 -146323593 + (T)n Simple_repeat Simple_repeat 1 27 0 1228 186 97 14 chr11 2460001 2460280 -146323192 - AluJo SINE Alu -6 306 5 815 119 9 0 chr11 2461303 2461412 -146322060 - AluSg SINE Alu -200 110 1 2168 109 7 0 chr11 2461516 2461821 -146321651 + AluSq SINE Alu 1 307 0 650 257 39 6 chr11 2461857 2462036 -146321436 + MER20 DNA MER1_type 34 218 -1 2126 119 7 19 chr11 2462140 2462450 -146321022 - AluSx SINE Alu -1 311 6 1498 224 14 0 chr11 2462455 2462741 -146320731 - AluJb SINE Alu -22 290 1 1990 146 3 19 chr11 2462987 2463295 -146320177 + AluJb SINE Alu 1 303 -9 233 157 0 59 chr11 2463409 2463460 -146320012 - L2 LINE L2 -1 3271 3224 259 197 0 145 chr11 2464561 2464637 -146318835 + MIR3 SINE MIR 112 176 -32 216 171 0 24 chr11 2465311 2465352 -146318120 + (CCG)n Simple_repeat Simple_repeat 3 42 0 206 171 0 105 chr11 2465514 2465590 -146317882 + G-rich Low_complexity Low_complexity 5 72 0 2367 93 0 3 chr11 2466153 2466455 -146317017 - AluSx SINE Alu -7 305 5 2199 85 7 29 chr11 2466464 2466770 -146316702 - AluSx SINE Alu -13 299 1 1749 133 4 12 chr11 2467084 2467340 -146316132 + AluSq SINE Alu 1 254 -59 1557 192 17 10 chr11 2467515 2467807 -146315665 + AluJb SINE Alu 1 294 -18 2416 64 14 0 chr11 2468071 2468367 -146315105 - AluSq SINE Alu -13 300 1 222 238 155 0 chr11 2468367 2468451 -146315021 + MIR SINE MIR 163 259 -3 21 0 0 0 chr11 2469299 2469320 -146314152 + GC_rich Low_complexity Low_complexity 1 21 0 789 247 22 35 chr11 2469700 2469927 -146313545 + MIR SINE MIR 33 256 -6 417 190 46 51 chr11 2470074 2470205 -146313267 - MIR3 SINE MIR -14 194 60 832 222 6 6 chr11 2472933 2473095 -146310377 + FRAM SINE Alu 1 158 -18 269 350 80 25 chr11 2473652 2473852 -146309620 + L2 LINE L2 2977 3187 -85 1001 175 0 18 chr11 2473870 2474041 -146309431 - AluJo SINE Alu -13 299 132 1845 160 3 3 chr11 2474056 2474338 -146309134 - AluJb SINE Alu -30 282 1 313 291 12 0 chr11 2474784 2474870 -146308602 - L3 LINE CR1 -84 1493 1407 2299 119 0 0 chr11 2474899 2475211 -146308261 - AluSx SINE Alu 0 312 1 790 154 0 22 chr11 2475231 2475367 -146308105 - AluJo SINE Alu -169 133 1 1133 77 11 17 chr11 2475374 2475555 -146307917 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1529 145 0 4 chr11 2475581 2475808 -146307664 - AluSg/x SINE Alu -1 311 86 1868 97 4 8 chr11 2475959 2476207 -146307265 - AluSx SINE Alu -8 304 58 541 312 49 30 chr11 2476207 2476473 -146306999 - L3 LINE CR1 -379 1198 928 255 189 19 0 chr11 2477603 2477656 -146305816 + MIR SINE MIR 112 165 -97 1882 162 10 10 chr11 2478421 2478729 -146304743 + AluJb SINE Alu 4 311 -1 1892 93 0 16 chr11 2478734 2478981 -146304491 + AluSx SINE Alu 1 243 -69 204 214 29 57 chr11 2479501 2479571 -146303901 - L2 LINE L2 -182 3090 3023 188 289 0 0 chr11 2479659 2479704 -146303768 - L2 LINE L2 -569 2745 2701 1219 149 9 33 chr11 2479708 2479923 -146303549 - AluJb SINE Alu -18 294 85 248 321 102 27 chr11 2479924 2480111 -146303361 - L2 LINE L2 -601 2713 2513 234 128 0 0 chr11 2480480 2480519 -146302953 + (TG)n Simple_repeat Simple_repeat 2 40 0 2068 107 68 0 chr11 2481050 2481331 -146302141 + AluSq SINE Alu 1 300 -13 1077 160 24 0 chr11 2481331 2481500 -146301972 + AluSg/x SINE Alu 134 306 -6 626 209 31 0 chr11 2481501 2481630 -146301842 - MIR SINE MIR -82 180 48 2174 102 7 3 chr11 2482130 2482423 -146301049 + AluSx SINE Alu 2 295 -17 1609 159 53 40 chr11 2482433 2482734 -146300738 + AluJb SINE Alu 1 305 -7 2681 40 0 0 chr11 2482735 2483032 -146300440 + AluY SINE Alu 1 297 -14 1517 157 132 18 chr11 2483041 2483321 -146300151 + AluJb SINE Alu 1 312 0 2184 126 7 0 chr11 2483677 2483987 -146299485 - AluSx SINE Alu 0 312 1 283 301 8 38 chr11 2486592 2486725 -146296747 + MIR3 SINE MIR 53 181 -27 976 266 40 4 chr11 2489040 2489275 -146294197 + MIR SINE MIR 2 248 -14 2577 54 10 0 chr11 2489275 2489572 -146293900 - AluY SINE Alu -11 300 1 976 266 40 4 chr11 2489572 2489588 -146293884 + MIR SINE MIR 248 262 0 2320 113 7 0 chr11 2489902 2490203 -146293269 - AluSx SINE Alu -9 303 1 2444 81 0 7 chr11 2490403 2490699 -146292773 - AluSg SINE Alu -16 294 1 633 244 42 63 chr11 2490856 2491025 -146292447 + MIR SINE MIR 18 182 -80 2113 139 0 3 chr11 2491025 2491327 -146292145 + AluJo SINE Alu 1 301 -11 633 244 42 63 chr11 2491327 2491395 -146292077 + MIR SINE MIR 182 250 -12 200 216 0 0 chr11 2492066 2492103 -146291369 + (TG)n Simple_repeat Simple_repeat 1 37 0 396 301 48 2 chr11 2492188 2492320 -146291152 + MIR SINE MIR 21 156 -74 465 244 125 24 chr11 2492846 2493014 -146290458 - MIR SINE MIR -57 205 21 367 202 19 77 chr11 2493041 2493145 -146290327 + MIR SINE MIR 68 165 -97 662 147 123 68 chr11 2493558 2493721 -146289751 + FAM SINE Alu 1 172 -3 1873 138 12 63 chr11 2493752 2494071 -146289401 - AluJb SINE Alu -9 303 1 601 245 18 31 chr11 2494201 2494364 -146289108 + MIR SINE MIR 41 201 -61 200 331 107 8 chr11 2494437 2494558 -146288914 + L2 LINE L2 2898 3030 -242 1978 130 0 0 chr11 2494608 2494870 -146288602 - AluSx SINE Alu -46 266 5 185 240 140 40 chr11 2496047 2496147 -146287325 + L2 LINE L2 2932 3041 -231 180 0 0 0 chr11 2496633 2496653 -146286819 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2370 99 0 13 chr11 2496868 2497180 -146286292 + AluSx SINE Alu 3 310 -2 2360 105 0 13 chr11 2497412 2497727 -146285745 + AluSx SINE Alu 1 311 -1 369 117 0 0 chr11 2500258 2500318 -146283154 + (CA)n Simple_repeat Simple_repeat 1 60 0 297 51 0 0 chr11 2500384 2500423 -146283049 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr11 2501522 2501552 -146281920 + GC_rich Low_complexity Low_complexity 1 30 0 203 95 48 0 chr11 2501776 2501818 -146281654 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1486 201 8 0 chr11 2552811 2553079 -146230393 + AluJo SINE Alu 5 274 -38 338 304 199 0 chr11 2553320 2553481 -146229991 - MIR SINE MIR -9 253 61 216 267 93 23 chr11 2554092 2554178 -146229294 + L2 LINE L2 3169 3260 -12 23 0 0 0 chr11 2554283 2554306 -146229166 + AT_rich Low_complexity Low_complexity 1 23 0 188 268 18 0 chr11 2554315 2554371 -146229101 - MIR SINE MIR -21 241 185 21 0 0 0 chr11 2554375 2554396 -146229076 + AT_rich Low_complexity Low_complexity 1 21 0 466 274 43 0 chr11 2554422 2554539 -146228933 + L2 LINE L2 3187 3308 -5 363 239 197 28 chr11 2554569 2554711 -146228761 - MIR SINE MIR -84 178 13 13439 24 1 2 chr11 2554834 2556387 -146227085 - L1P LINE L1 -1043 5103 3553 1863 88 4 0 chr11 2556383 2556632 -146226840 - L1P LINE L1 -5671 475 226 * 1002 171 64 0 chr11 2556758 2556945 -146226527 + L1MB5 LINE L1 5968 6166 -8 1726 193 7 0 chr11 2557096 2557392 -146226080 + AluJb SINE Alu 3 300 -12 731 278 179 34 chr11 2557425 2557871 -146225601 - MLT1J LTR MaLR 0 511 1 2214 112 3 3 chr11 2557916 2558210 -146225262 + AluSq SINE Alu 1 294 -19 206 227 0 23 chr11 2558277 2558321 -146225151 + GA-rich Low_complexity Low_complexity 4 46 0 759 258 32 24 chr11 2558893 2559141 -146224331 - MIR SINE MIR -1 261 12 430 293 50 14 chr11 2559409 2559549 -146223923 + MIR SINE MIR 3 147 -115 2595 68 0 0 chr11 2559685 2560071 -146223401 + AluY SINE Alu 1 386 0 201 147 0 0 chr11 2560419 2560453 -146223019 + (CA)n Simple_repeat Simple_repeat 1 34 0 2261 114 0 3 chr11 2560520 2560819 -146222653 + AluSx SINE Alu 1 298 -14 274 269 0 13 chr11 2560949 2561027 -146222445 - L2 LINE L2 0 3272 3196 419 223 79 114 chr11 2561146 2561348 -146222124 - LTR67 LTR ERVL -9 548 354 786 257 31 9 chr11 2561928 2562150 -146221322 - MIR SINE MIR -2 260 34 185 232 152 18 chr11 2562613 2562725 -146220747 + L2 LINE L2 2842 2968 -304 313 264 79 36 chr11 2563542 2563682 -146219790 - MIR3 SINE MIR -42 166 21 237 235 98 10 chr11 2564199 2564301 -146219171 - MIR SINE MIR -4 258 148 12806 95 6 8 chr11 2564413 2566209 -146217263 - L1P LINE L1 -4355 1791 1 1023 207 14 33 chr11 2566414 2566463 -146217009 + MER58A DNA MER1_type 4 52 -2368 1628 158 62 11 chr11 2566463 2566735 -146216737 - AluJo SINE Alu -26 286 1 1023 207 14 33 chr11 2566735 2566898 -146216574 + MER58A DNA MER1_type 52 212 -12 199 409 36 0 chr11 2566900 2567010 -146216462 + L2 LINE L2 2868 2981 -291 438 243 181 33 chr11 2567472 2567682 -146215790 + MIR SINE MIR 2 242 -20 491 60 0 0 chr11 2568607 2568674 -146214798 - AluY SINE Alu -4 305 239 1737 77 0 0 chr11 2568674 2568882 -146214590 - AluY SINE Alu -103 208 1 2419 82 0 0 chr11 2569800 2570094 -146213378 - AluY SINE Alu -17 294 1 269 274 69 20 chr11 2570104 2570206 -146213266 + MIR SINE MIR 124 230 -32 1799 257 75 17 chr11 2570227 2571003 -146212469 - L2 LINE L2 -1 3312 2488 520 264 54 0 chr11 2571007 2571155 -146212317 - L2 LINE L2 -968 2346 2191 3237 110 15 25 chr11 2571372 2571892 -146211580 + L1MA6 LINE L1 5768 6282 -18 301 115 0 0 chr11 2571915 2571967 -146211505 - AluJo SINE Alu 0 302 251 1200 175 0 5 chr11 2571967 2572167 -146211305 - AluJo SINE Alu -113 199 1 46 33 0 0 chr11 2572196 2572256 -146211216 + AT_rich Low_complexity Low_complexity 1 60 0 1418 273 21 40 chr11 2572642 2572894 -146210578 - L2 LINE L2 -275 3038 2783 2198 102 3 38 chr11 2572894 2573072 -146210400 - AluSp SINE Alu -11 302 138 2951 6 0 9 chr11 2573072 2573391 -146210081 - AluYb8 SINE Alu -2 316 1 2198 102 3 38 chr11 2573391 2573525 -146209947 - AluSp SINE Alu -175 138 1 1418 273 21 40 chr11 2573525 2573798 -146209674 - L2 LINE L2 -530 2783 2524 1388 129 19 5 chr11 2574355 2574564 -146208908 + L1P3 LINE L1 10 221 -6240 327 267 199 17 chr11 2574963 2575172 -146208300 + MIR SINE MIR 10 247 -15 1693 133 13 63 chr11 2575559 2575780 -146207692 - MLT1A1 LTR MaLR 0 365 161 2396 100 0 0 chr11 2575780 2576091 -146207381 - AluY SINE Alu 0 311 1 1693 133 13 63 chr11 2576091 2576170 -146207302 - MLT1A1 LTR MaLR -204 161 80 999 136 7 7 chr11 2576176 2576331 -146207141 - LTR32 LTR ERVL 0 471 317 1879 182 32 15 chr11 2576410 2576751 -146206721 - LTR32 LTR ERVL -110 361 15 541 152 0 0 chr11 2576751 2576830 -146206642 - MLT1A1 LTR MaLR -295 79 1 272 277 54 36 chr11 2577059 2577171 -146206301 + L2 LINE L2 3158 3271 -1 542 283 61 100 chr11 2577204 2577565 -146205907 + L2 LINE L2 2924 3270 -2 487 250 123 26 chr11 2578113 2578315 -146205157 + MIR SINE MIR 38 262 0 2129 111 35 0 chr11 2579240 2579528 -146203944 + AluSx SINE Alu 1 298 -14 223 313 76 8 chr11 2579868 2579999 -146203473 - MIR SINE MIR -11 251 112 1876 154 0 39 chr11 2580093 2580399 -146203073 - AluJb SINE Alu -18 294 1 2398 126 3 15 chr11 2580699 2581040 -146202432 - MER1B DNA MER1_type 0 337 1 850 250 9 4 chr11 2581328 2581612 -146201860 - MIR SINE MIR -13 249 1 2422 94 3 0 chr11 2582248 2582555 -146200917 + AluSg SINE Alu 1 308 -2 263 340 108 30 chr11 2582683 2583015 -146200457 - L2 LINE L2 -395 2919 2562 481 306 128 37 chr11 2583131 2583726 -146199746 - L2 LINE L2 -979 2335 1687 271 349 0 0 chr11 2584594 2584680 -146198792 + L2 LINE L2 3186 3271 -1 351 0 0 0 chr11 2584789 2584828 -146198644 + (CA)n Simple_repeat Simple_repeat 2 40 0 235 167 0 62 chr11 2585287 2585335 -146198137 + MER58B DNA MER1_type 47 91 -250 1348 176 43 4 chr11 2586589 2586844 -146196628 + MER58B DNA MER1_type 76 340 -1 4290 154 18 72 chr11 2586868 2587778 -146195694 - L1MB8 LINE L1 -6 6172 5313 1812 174 31 3 chr11 2587796 2588123 -146195349 - L1PA16 LINE L1 -9 6157 5822 767 156 0 0 chr11 2588143 2588271 -146195201 - FRAM SINE Alu 0 40 1 355 316 151 34 chr11 2588642 2588993 -146194479 + L3 LINE CR1 948 1339 -238 1638 176 56 0 chr11 2589109 2589405 -146194067 + AluJb SINE Alu 1 311 0 2313 92 3 13 chr11 2590019 2590323 -146193149 - AluSq SINE Alu -12 301 1 2041 126 11 0 chr11 2590651 2590937 -146192535 + AluSx SINE Alu 1 289 -23 247 167 0 0 chr11 2591340 2591382 -146192090 + L3 LINE CR1 1533 1574 -3 264 231 0 46 chr11 2591702 2591767 -146191705 - MIR SINE MIR -64 144 83 429 221 65 26 chr11 2592528 2592682 -146190790 + MIR SINE MIR 79 238 -24 843 194 159 9 chr11 2593009 2593236 -146190236 + MIR SINE MIR 2 262 0 254 254 0 0 chr11 2593766 2593829 -146189643 - L1M4 LINE L1 -875 5271 5209 2487 53 3 10 chr11 2594130 2594433 -146189039 + AluY SINE Alu 1 301 -10 1314 223 70 76 chr11 2594436 2594640 -146188832 - L1M4 LINE L1 -1059 5087 4883 2182 134 0 0 chr11 2594640 2594939 -146188533 + AluSx SINE Alu 1 299 -13 1314 223 70 76 chr11 2594939 2595297 -146188175 - L1M4 LINE L1 -1263 4883 4525 227 30 0 30 chr11 2595297 2595330 -146188142 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 524 137 253 0 chr11 2595336 2595431 -146188041 - FLAM_C SINE Alu -14 119 1 1314 223 70 76 chr11 2595431 2595502 -146187970 - L1M4 LINE L1 -1626 4520 4450 2548 78 0 0 chr11 2595502 2595811 -146187661 - AluY SINE Alu -2 309 1 1314 223 70 76 chr11 2595811 2595882 -146187590 - L1M4 LINE L1 -1696 4450 4378 1994 234 81 47 chr11 2595882 2596428 -146187044 - Charlie7 DNA MER1_type -1125 1487 903 2209 100 0 0 chr11 2596428 2596736 -146186736 + AluSc SINE Alu 1 308 0 1994 234 81 47 chr11 2596736 2596978 -146186494 - Charlie7 DNA MER1_type -1709 903 671 586 197 87 104 chr11 2596995 2597178 -146186294 + MER58A DNA MER1_type 45 224 0 1185 268 138 53 chr11 2597181 2597804 -146185668 - Charlie7 DNA MER1_type -1936 676 1 1228 42 24 0 chr11 2598274 2598439 -146185033 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 211 318 16 0 chr11 2598463 2598526 -146184946 + MIR SINE MIR 76 139 -69 2304 95 0 32 chr11 2598984 2599299 -146184173 + AluSx SINE Alu 1 305 -7 1022 166 37 0 chr11 2599958 2600121 -146183351 + AluJo SINE Alu 1 169 -143 1451 85 0 40 chr11 2600181 2600380 -146183092 + AluSg/x SINE Alu 105 295 -15 214 191 107 71 chr11 2600721 2600805 -146182667 - L2 LINE L2 0 3272 3186 718 178 0 0 chr11 2600985 2601092 -146182380 + FLAM_C SINE Alu 24 130 -13 192 47 47 23 chr11 2601839 2601882 -146181590 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 264 0 19 chr11 2601971 2602024 -146181448 - L2 LINE L2 -8 3264 3213 924 201 126 10 chr11 2602025 2602224 -146181248 + MER58A DNA MER1_type 2 223 -1 462 183 139 17 chr11 2602233 2602348 -146181124 + L1ME3 LINE L1 6027 6155 -7 2018 125 27 10 chr11 2602453 2602748 -146180724 + AluSx SINE Alu 7 306 -6 23 33 0 0 chr11 2602748 2602778 -146180694 + AT_rich Low_complexity Low_complexity 1 30 0 1254 100 0 0 chr11 2603310 2603470 -146180002 - AluSg/x SINE Alu -16 294 135 253 291 35 0 chr11 2603808 2603894 -146179578 - MIR SINE MIR -107 155 67 279 213 17 43 chr11 2604531 2604620 -146178852 - HERV16 LTR ERVL -2848 2148 2082 1222 131 159 19 chr11 2604655 2604901 -146178571 + L1MB7 LINE L1 5839 6118 -66 776 214 0 0 chr11 2604902 2605033 -146178439 + FLAM_C SINE Alu 2 132 -11 1539 188 3 14 chr11 2605071 2605358 -146178114 - AluJo SINE Alu -20 292 9 2373 76 3 0 chr11 2605657 2605946 -146177526 + AluSq SINE Alu 1 290 -23 1232 255 79 44 chr11 2606412 2606598 -146176874 + MLT1K LTR MaLR 3 181 -295 1775 140 12 64 chr11 2606598 2606927 -146176545 - AluJb SINE Alu 0 312 1 1232 255 79 44 chr11 2606927 2607195 -146176277 + MLT1K LTR MaLR 181 473 -3 2033 155 3 0 chr11 2607428 2607732 -146175740 + AluJb SINE Alu 1 305 -7 2200 87 13 23 chr11 2608274 2608410 -146175062 + AluSx SINE Alu 1 137 -175 2305 93 7 3 chr11 2608410 2608711 -146174761 + AluSq SINE Alu 1 302 -11 2200 87 13 23 chr11 2608711 2608874 -146174598 + AluSx SINE Alu 137 297 -15 4234 162 50 72 chr11 2608923 2609069 -146174403 + L1MB5 LINE L1 4967 5115 -1065 188 83 0 28 chr11 2609069 2609105 -146174367 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 144 4 11 chr11 2609111 2609381 -146174091 - AluSx SINE Alu -38 274 7 4234 162 50 72 chr11 2609381 2609464 -146174008 + L1MB5 LINE L1 5120 5203 -977 2524 56 0 7 chr11 2609464 2609767 -146173705 + AluY SINE Alu 1 301 -10 753 216 0 8 chr11 2609770 2609904 -146173568 + FLAM_C SINE Alu 1 133 0 4234 162 50 72 chr11 2609904 2610421 -146173051 + L1MB5 LINE L1 5205 5547 -633 2199 109 3 0 chr11 2610421 2610715 -146172757 + AluSc SINE Alu 1 295 -14 4234 162 50 72 chr11 2610715 2611335 -146172137 + L1MB5 LINE L1 5547 6180 0 36261 85 12 18 chr11 2611466 2614441 -146169031 + L1PA6 LINE L1 240 3163 -2991 2430 76 0 10 chr11 2614441 2614755 -146168717 + AluY SINE Alu 1 311 0 36261 85 12 18 chr11 2614755 2617730 -146165742 + L1PA6 LINE L1 3163 6154 0 468 137 86 26 chr11 2617760 2617877 -146165595 + MIR SINE MIR 69 192 -70 236 177 89 137 chr11 2617910 2617977 -146165495 + Charlie8 DNA MER1_type 36 96 -2321 2036 148 0 0 chr11 2617977 2618275 -146165197 + AluSx SINE Alu 1 298 -14 236 177 89 137 chr11 2618275 2618331 -146165141 + Charlie8 DNA MER1_type 96 153 -2264 1652 192 0 7 chr11 2618333 2618604 -146164868 + AluJb SINE Alu 1 269 -43 903 143 8 0 chr11 2618823 2618949 -146164523 - FLAM_A SINE Alu -2 131 5 254 309 52 10 chr11 2618981 2619078 -146164394 + L2 LINE L2 3122 3222 -50 3319 256 63 23 chr11 2619503 2620404 -146163068 + L1M4b LINE L1 11 947 -5912 1285 167 0 39 chr11 2620404 2620465 -146163007 + AluJo SINE Alu 84 146 -166 301 93 37 0 chr11 2620465 2620519 -146162953 + L1PA8 LINE L1 6117 6172 0 1285 167 0 39 chr11 2620519 2620690 -146162782 + AluJo SINE Alu 146 307 -5 2873 204 84 44 chr11 2620691 2621075 -146162397 + L1M4b LINE L1 945 1312 -5647 224 30 30 0 chr11 2621075 2621108 -146162364 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2873 204 84 44 chr11 2621108 2621604 -146161868 + L1M4b LINE L1 1312 1787 -5172 1748 148 7 4 chr11 2621604 2621874 -146161598 + AluSx SINE Alu 37 307 -5 2873 204 84 44 chr11 2621874 2622352 -146161120 + L1M4b LINE L1 1787 2369 -4590 1227 259 100 92 chr11 2622352 2622667 -146160805 - L2 LINE L2 -31 3282 2971 2187 108 3 0 chr11 2622667 2622954 -146160518 - AluSx SINE Alu -24 288 1 1227 259 100 92 chr11 2622954 2623581 -146159891 - L2 LINE L2 -342 2971 2327 1509 186 13 16 chr11 2623581 2623888 -146159584 + L1M4 LINE L1 5027 5332 -814 1736 167 20 26 chr11 2623888 2624194 -146159278 - AluSx SINE Alu -6 306 3 24 32 0 0 chr11 2624202 2624233 -146159239 + AT_rich Low_complexity Low_complexity 1 31 0 1752 110 13 77 chr11 2624233 2624348 -146159124 + L1P4 LINE L1 5476 5597 -569 2602 57 3 6 chr11 2624348 2624662 -146158810 - AluSp SINE Alu 0 313 1 1752 110 13 77 chr11 2624662 2624846 -146158626 + L1P4 LINE L1 5597 5756 -410 1000 105 0 26 chr11 2624858 2625011 -146158461 + AluJo SINE Alu 1 149 -163 21 0 0 0 chr11 2625133 2625154 -146158318 + AT_rich Low_complexity Low_complexity 1 21 0 1599 173 26 4 chr11 2625412 2625683 -146157789 - AluJo SINE Alu -30 282 6 311 216 137 20 chr11 2626111 2626213 -146157259 - MIR SINE MIR -27 235 122 827 160 30 15 chr11 2626445 2626576 -146156896 + FLAM_A SINE Alu 1 133 0 212 0 36 0 chr11 2626603 2626631 -146156841 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1211 128 35 66 chr11 2626690 2626916 -146156556 - MER20 DNA MER1_type 0 219 1 804 123 0 0 chr11 2626957 2627071 -146156401 - AluSg SINE Alu -23 289 176 803 114 0 0 chr11 2627071 2627176 -146156296 - AluSg SINE Alu -205 105 1 2053 149 0 9 chr11 2627963 2628278 -146155194 - AluJo SINE Alu 0 312 1 261 367 43 7 chr11 2628278 2628417 -146155055 + MIR SINE MIR 92 235 -27 252 336 35 9 chr11 2628454 2628570 -146154902 - MIR SINE MIR -27 235 117 567 161 108 0 chr11 2628625 2628755 -146154717 + L1MB7 LINE L1 6041 6184 0 1957 144 0 13 chr11 2628877 2629182 -146154290 - AluSx SINE Alu -11 301 1 220 246 0 0 chr11 2629766 2629811 -146153661 + CT-rich Low_complexity Low_complexity 5 52 -9 2222 112 7 0 chr11 2629811 2630114 -146153358 - AluSq SINE Alu -8 305 1 220 246 0 0 chr11 2630114 2630125 -146153347 + CT-rich Low_complexity Low_complexity 51 61 0 352 296 148 0 chr11 2630639 2630754 -146152718 + MIR SINE MIR 23 154 -108 287 333 8 0 chr11 2631236 2631368 -146152104 + (TG)n Simple_repeat Simple_repeat 2 134 0 452 308 39 19 chr11 2632491 2632699 -146150773 - L2 LINE L2 -196 3076 2865 30345 30 4 1 chr11 2632854 2637188 -146146284 + L1PA3 LINE L1 1811 6155 0 2602 119 45 31 chr11 2637467 2637847 -146145625 + MSTA LTR MaLR 1 389 -39 1954 144 10 13 chr11 2637847 2638159 -146145313 - AluSx SINE Alu -1 311 1 2602 119 45 31 chr11 2638159 2638197 -146145275 + MSTA LTR MaLR 389 425 -3 1771 135 114 3 chr11 2639500 2639797 -146143675 + MER7A DNA MER2_type 2 329 -17 3565 139 11 20 chr11 2639803 2640363 -146143109 - MER6A DNA MER2_type -50 555 1 2299 74 7 13 chr11 2640454 2640752 -146142720 + AluY SINE Alu 1 296 -15 2148 108 17 3 chr11 2640775 2641097 -146142375 + AluSx SINE Alu 1 312 0 190 246 53 18 chr11 2641473 2641530 -146141942 + L2 LINE L2 3004 3062 -210 858 140 22 0 chr11 2641938 2642074 -146141398 + AluJb SINE Alu 1 139 -173 233 318 149 0 chr11 2642278 2642385 -146141087 + L2 LINE L2 3191 3313 0 350 303 114 18 chr11 2642892 2643091 -146140381 + MIR3 SINE MIR 2 220 -42 1124 231 12 16 chr11 2643366 2643609 -146139863 + MIR SINE MIR 12 253 -9 1997 97 6 74 chr11 2643613 2643924 -146139548 + AluSx SINE Alu 1 290 -22 314 295 66 41 chr11 2643962 2644039 -146139433 + L2 LINE L2 3142 3225 -47 2423 155 77 10 chr11 2644039 2644440 -146139032 - MSTA LTR MaLR 0 428 1 314 295 66 41 chr11 2644440 2644484 -146138988 + L2 LINE L2 3225 3266 -6 418 302 26 0 chr11 2644520 2644636 -146138836 + MIR SINE MIR 75 193 -69 449 267 17 33 chr11 2645119 2645287 -146138185 + MIR3 SINE MIR 23 186 -22 305 283 0 33 chr11 2645287 2645379 -146138093 + MIR3 SINE MIR 83 171 -37 375 302 142 12 chr11 2645632 2645801 -146137671 + MIR3 SINE MIR 1 191 -17 512 299 92 5 chr11 2646073 2646257 -146137215 + MIR SINE MIR 29 228 -34 201 301 14 14 chr11 2646797 2646870 -146136602 - MIR SINE MIR -98 164 92 216 176 0 0 chr11 2647158 2647192 -146136280 - L2 LINE L2 -14 3299 3266 798 186 37 12 chr11 2647275 2647436 -146136036 - MIR SINE MIR -17 245 81 622 301 37 50 chr11 2647423 2647722 -146135750 - L2 LINE L2 -149 3123 2829 * 2347 172 161 47 chr11 2647987 2648452 -146135020 - L1MD2 LINE L1 -1 6358 5805 2428 84 0 0 chr11 2648452 2648749 -146134723 - AluSg SINE Alu -13 297 1 2347 172 161 47 chr11 2648749 2648898 -146134574 - L1MD2 LINE L1 -554 5805 5674 311 339 42 52 chr11 2648899 2648944 -146134528 - L2 LINE L2 -563 2751 2707 1934 156 7 13 chr11 2648944 2649245 -146134227 - AluJo SINE Alu -13 299 1 311 339 42 52 chr11 2649245 2649391 -146134081 - L2 LINE L2 -607 2707 2562 1738 134 76 0 chr11 2650445 2650728 -146132744 + AluJb SINE Alu 1 303 0 201 312 43 35 chr11 2651857 2651998 -146131474 + MIR3 SINE MIR 50 191 -17 1884 176 23 0 chr11 2652087 2652388 -146131084 - AluJb SINE Alu -4 308 1 517 267 74 57 chr11 2652663 2652959 -146130513 - L2 LINE L2 -1 3312 3012 2924 190 58 18 chr11 2653071 2653697 -146129775 + L1ME2 LINE L1 5504 6154 -10 660 201 44 87 chr11 2653711 2653953 -146129519 + L1ME3 LINE L1 5915 6154 -12 648 158 17 0 chr11 2654010 2654130 -146129342 - MER5B DNA MER1_type -56 122 1 47 0 0 0 chr11 2654205 2654252 -146129220 + AT_rich Low_complexity Low_complexity 1 47 0 337 157 0 0 chr11 2654252 2654303 -146129169 - MER66A LTR ERV1 -140 338 288 363 323 16 0 chr11 2654361 2654485 -146128987 - L2 LINE L2 -468 2846 2721 222 284 203 42 chr11 2654630 2654940 -146128532 - L2 LINE L2 -800 2514 2155 1016 184 6 6 chr11 2654990 2655164 -146128308 + AluJb SINE Alu 138 311 -1 737 193 42 31 chr11 2655211 2655403 -146128069 - L2 LINE L2 0 3313 3120 2063 115 0 7 chr11 2655566 2655869 -146127603 - AluSg SINE Alu 0 301 1 1429 199 10 34 chr11 2655886 2656177 -146127295 - AluJo SINE Alu -28 284 1 2339 93 0 0 chr11 2656187 2656476 -146126996 - AluSc SINE Alu -20 289 1 748 185 15 0 chr11 2656540 2656670 -146126802 + FLAM_A SINE Alu 1 132 -1 1965 86 90 21 chr11 2657000 2657279 -146126193 + AluSq SINE Alu 1 298 -15 182 105 26 0 chr11 2657730 2657768 -146125704 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5676 187 70 8 chr11 2658032 2659265 -146124207 + Charlie1a DNA MER1_type 1 1309 -146 1736 149 76 4 chr11 2659322 2659597 -146123875 - AluJo SINE Alu -17 295 1 1724 180 20 10 chr11 2659768 2660063 -146123409 - AluJb SINE Alu -14 298 1 474 263 26 0 chr11 2660164 2660278 -146123194 + L2 LINE L2 3192 3308 -5 216 0 0 0 chr11 2660604 2660628 -146122844 + (TTA)n Simple_repeat Simple_repeat 2 25 0 682 208 21 0 chr11 2661630 2661774 -146121698 - MIR SINE MIR -48 214 68 381 286 43 19 chr11 2661832 2661993 -146121479 - MIR SINE MIR -90 172 8 239 344 43 0 chr11 2662031 2662124 -146121348 + L2 LINE L2 3206 3302 -11 2406 72 3 3 chr11 2662323 2662615 -146120857 - AluSx SINE Alu -19 293 2 245 313 63 46 chr11 2662932 2663083 -146120389 - MIR SINE MIR -78 184 33 234 302 47 35 chr11 2663446 2663532 -146119940 + MIR SINE MIR 37 123 -139 23 0 0 0 chr11 2664446 2664469 -146119003 + AT_rich Low_complexity Low_complexity 1 23 0 3841 143 46 113 chr11 2664470 2664724 -146118748 - L1MB5 LINE L1 -16 6158 5889 2255 101 0 3 chr11 2664724 2665031 -146118441 - AluY SINE Alu -5 306 1 2052 118 40 0 chr11 2665036 2665332 -146118140 - AluSx SINE Alu -4 308 1 3841 143 46 113 chr11 2665332 2665453 -146118019 - L1MB5 LINE L1 -289 5885 5757 2593 65 3 0 chr11 2665453 2665759 -146117713 - AluSp SINE Alu -6 307 1 3841 143 46 113 chr11 2665759 2665898 -146117574 - L1MB5 LINE L1 -417 5757 5610 507 80 13 0 chr11 2665898 2665973 -146117499 + L1PA10 LINE L1 6093 6168 0 3841 143 46 113 chr11 2665973 2666450 -146117022 - L1MB5 LINE L1 -564 5610 5221 503 331 90 53 chr11 2666488 2666704 -146116768 + L2 LINE L2 2899 3135 -137 2348 100 10 0 chr11 2666704 2667013 -146116459 - AluSq SINE Alu -1 312 1 503 331 90 53 chr11 2667013 2667152 -146116320 + L2 LINE L2 3135 3267 -5 499 257 169 8 chr11 2667237 2667474 -146115998 - L2 LINE L2 0 3313 3039 350 289 75 43 chr11 2667501 2667688 -146115784 + MIR SINE MIR 20 212 -50 530 167 0 0 chr11 2668062 2668146 -146115326 + AluSg/x SINE Alu 201 284 -26 2157 151 39 5 chr11 2668146 2668531 -146114941 + L1MB7 LINE L1 5769 6166 -18 1822 149 17 40 chr11 2668544 2668846 -146114626 - AluJb SINE Alu -17 295 1 1617 196 0 11 chr11 2668971 2669298 -146114174 - AluJo SINE Alu 0 324 1 2484 79 0 0 chr11 2669767 2670072 -146113400 + AluY SINE Alu 1 305 -6 2287 91 3 7 chr11 2670082 2670380 -146113092 + AluSc SINE Alu 1 297 -12 2330 93 0 7 chr11 2671047 2671348 -146112124 + AluY SINE Alu 1 299 -12 1925 121 0 54 chr11 2671900 2672213 -146111259 - AluSx SINE Alu -16 296 1 210 59 0 29 chr11 2672460 2672494 -146110978 - MIR SINE MIR -14 248 216 283 238 0 16 chr11 2672664 2672727 -146110745 - MIR SINE MIR -6 256 195 1346 122 0 0 chr11 2672730 2672910 -146110562 - AluSg/x SINE Alu -13 297 118 2292 93 0 3 chr11 2673077 2673368 -146110104 - AluSg SINE Alu -20 290 1 3280 144 69 29 chr11 2673639 2674006 -146109466 - L1PB4 LINE L1 -3 6153 5747 279 0 0 0 chr11 2674006 2674037 -146109435 + (TG)n Simple_repeat Simple_repeat 2 32 0 3280 144 69 29 chr11 2674037 2674322 -146109150 - L1PB4 LINE L1 -409 5747 5475 21 57 0 0 chr11 2674447 2674482 -146108990 + AT_rich Low_complexity Low_complexity 1 35 0 2562 88 3 3 chr11 2674648 2675001 -146108471 - L1PA13 LINE L1 -7 6156 5804 305 179 253 0 chr11 2675003 2675098 -146108374 + Charlie1 DNA MER1_type 2638 2756 -5 263 241 205 9 chr11 2675186 2675298 -146108174 - L2 LINE L2 0 3272 3139 324 333 109 10 chr11 2675562 2675763 -146107709 - MIR SINE MIR -36 226 6 1932 146 7 10 chr11 2676276 2676584 -146106888 - AluJb SINE Alu -5 307 1 1232 204 9 0 chr11 2676648 2676864 -146106608 + MER58A DNA MER1_type 1 218 -6 2190 105 0 3 chr11 2677283 2677604 -146105868 + AluSx SINE Alu 1 320 0 214 290 97 21 chr11 2677734 2677827 -146105645 + MIR SINE MIR 30 129 -79 288 317 120 7 chr11 2678183 2678325 -146105147 - MIR3 SINE MIR -8 200 43 315 327 72 33 chr11 2678689 2678842 -146104630 - L1ME LINE L1 -634 5487 5329 181 274 116 11 chr11 2679596 2679691 -146103781 - L2 LINE L2 -38 3275 3171 416 309 79 26 chr11 2679860 2680125 -146103347 + L3 LINE CR1 894 1172 -405 440 219 57 32 chr11 2680135 2680258 -146103214 - L2 LINE L2 -7 3306 3181 230 196 39 0 chr11 2680258 2680309 -146103163 + L3 LINE CR1 1206 1258 -319 372 262 248 10 chr11 2680376 2680578 -146102894 - MIR SINE MIR -12 250 1 362 281 39 46 chr11 2680591 2680744 -146102728 + L3 LINE CR1 1312 1463 -114 1907 144 11 0 chr11 2680764 2681070 -146102402 + AluJo SINE Alu 3 311 0 667 166 28 108 chr11 2682123 2682406 -146101066 - MER31-int LTR ERV1 -3250 1686 1313 927 126 0 53 chr11 2682653 2682804 -146100668 + FLAM_C SINE Alu 1 143 0 2433 57 0 0 chr11 2682807 2683125 -146100347 + AluY SINE Alu 1 318 0 2135 128 10 0 chr11 2684959 2685256 -146098216 - AluJb SINE Alu -12 300 1 1041 184 0 0 chr11 2685275 2685443 -146098029 - AluJ SINE Alu -14 298 131 21 0 0 0 chr11 2685448 2685469 -146098003 + AT_rich Low_complexity Low_complexity 1 21 0 889 133 0 15 chr11 2685953 2686088 -146097384 + FLAM_C SINE Alu 1 133 0 517 244 16 0 chr11 2686544 2686667 -146096805 - L2 LINE L2 0 3313 3189 202 241 38 25 chr11 2686748 2686827 -146096645 + MIR SINE MIR 113 192 -70 2077 134 3 16 chr11 2686891 2687204 -146096268 + AluSx SINE Alu 1 309 -3 3270 194 37 80 chr11 2687213 2688111 -146095361 + L1ME1 LINE L1 5290 6148 -18 838 148 16 0 chr11 2688225 2688353 -146095119 - AluJ SINE Alu -182 130 1 2117 134 0 0 chr11 2688362 2688654 -146094818 - AluSx SINE Alu -20 292 1 256 333 34 8 chr11 2688684 2688801 -146094671 + L2 LINE L2 3151 3270 -2 722 246 81 21 chr11 2688963 2689199 -146094273 + MIR SINE MIR 3 252 -10 448 309 152 10 chr11 2689216 2689420 -146094052 + MIR SINE MIR 20 252 -10 4703 130 241 44 chr11 2689678 2689694 -146093778 - L1 LINE L1 -761 5385 5373 1702 180 0 44 chr11 2689694 2690011 -146093461 - AluJb SINE Alu -9 303 1 4703 130 241 44 chr11 2690011 2690242 -146093230 - L1 LINE L1 -773 5373 5189 198 0 0 0 chr11 2690242 2690264 -146093208 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4703 130 241 44 chr11 2690264 2690284 -146093188 - L1 LINE L1 -957 5189 5174 1898 124 0 0 chr11 2690284 2690534 -146092938 - AluSx SINE Alu -62 250 1 4703 130 241 44 chr11 2690534 2691158 -146092314 - L1 LINE L1 -972 5174 4674 1934 156 0 13 chr11 2691158 2691472 -146092000 + AluJb SINE Alu 1 310 -2 4703 130 241 44 chr11 2691472 2691766 -146091706 - L1 LINE L1 -1472 4674 3963 1022 261 81 32 chr11 2691774 2692146 -146091326 - MLT1G LTR MaLR -191 399 10 1864 146 14 4 chr11 2692157 2692471 -146091001 + AluSx SINE Alu 1 317 0 220 324 101 14 chr11 2692503 2692651 -146090821 + MIR SINE MIR 84 244 -18 240 300 0 22 chr11 2693359 2693449 -146090023 - L3 LINE CR1 -90 1487 1400 513 335 133 6 chr11 2693576 2693892 -146089580 - L3 LINE CR1 -343 1234 879 432 170 38 28 chr11 2695487 2695593 -146087879 - MIR SINE MIR -10 252 146 1258 296 38 81 chr11 2695596 2696310 -146087162 - MER21B LTR ERV1 -176 687 5 2346 93 0 16 chr11 2696411 2696722 -146086750 - AluSc SINE Alu -1 308 3 652 193 51 57 chr11 2747192 2747234 -146036238 - MER5B DNA MER1_type -2 176 135 1864 152 10 10 chr11 2747234 2747412 -146036060 - AluJb SINE Alu -9 303 123 261 0 0 0 chr11 2747412 2747441 -146036031 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1864 152 10 10 chr11 2747441 2747565 -146035907 - AluJb SINE Alu -188 124 1 652 193 51 57 chr11 2747565 2747698 -146035774 - MER5B DNA MER1_type -43 135 2 2332 98 0 13 chr11 2747907 2748214 -146035258 - AluSx SINE Alu -9 303 1 748 50 0 20 chr11 2748214 2748314 -146035158 - AluY SINE Alu -35 276 179 349 263 46 46 chr11 2748472 2748517 -146034955 + MLT1K LTR MaLR 384 428 -160 1978 155 0 13 chr11 2748517 2748821 -146034651 + AluJb SINE Alu 1 300 -12 349 263 46 46 chr11 2748821 2748950 -146034522 + MLT1K LTR MaLR 427 558 -30 35 0 0 22 chr11 2749095 2749112 -146034360 + AT_rich Low_complexity Low_complexity 1 17 -28 2395 89 0 0 chr11 2749112 2749404 -146034068 + AluSx SINE Alu 1 292 -20 35 0 0 22 chr11 2749404 2749432 -146034040 + AT_rich Low_complexity Low_complexity 17 45 0 23 33 0 0 chr11 2749813 2749843 -146033629 + AT_rich Low_complexity Low_complexity 1 30 0 1221 189 62 72 chr11 2750030 2750142 -146033330 + Tigger3(Golem) DNA MER2_type 2530 2642 -387 2267 102 14 0 chr11 2750142 2750437 -146033035 - AluSq SINE Alu -14 299 1 1221 189 62 72 chr11 2750437 2750546 -146032926 + Tigger3(Golem) DNA MER2_type 2642 2751 -278 2098 135 0 25 chr11 2750546 2750864 -146032608 - AluSx SINE Alu -2 310 1 1221 189 62 72 chr11 2750864 2751042 -146032430 + Tigger3(Golem) DNA MER2_type 2751 2926 -103 1865 99 56 49 chr11 2751800 2752104 -146031368 + AluSx SINE Alu 1 306 -6 667 280 59 57 chr11 2752224 2752596 -146030876 + L2 LINE L2 2941 3313 0 186 364 34 23 chr11 2752667 2752755 -146030717 + L2 LINE L2 3136 3224 -48 207 146 0 0 chr11 2752802 2752843 -146030629 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2123 110 0 0 chr11 2752990 2753263 -146030209 + AluSx SINE Alu 24 296 -16 282 246 0 0 chr11 2753442 2753499 -146029973 - MER8 DNA MER2_type -2 237 181 2859 117 27 27 chr11 2753514 2753960 -146029512 + Tigger2 DNA MER2_type 2273 2718 0 727 359 23 11 chr11 2754250 2754512 -146028960 + MLT1K LTR MaLR 17 281 -307 180 152 0 0 chr11 2754563 2754596 -146028876 + (TAA)n Simple_repeat Simple_repeat 3 35 0 872 253 21 17 chr11 2754598 2754839 -146028633 - MIR SINE MIR 0 262 21 441 0 0 0 chr11 2754844 2754893 -146028579 + (TG)n Simple_repeat Simple_repeat 2 50 0 8558 47 9 0 chr11 2755109 2756937 -146026535 + L1PA5 LINE L1 4300 6154 0 814 171 8 0 chr11 2756978 2757101 -146026371 - FLAM_C SINE Alu -19 124 1 1186 118 49 25 chr11 2757120 2757324 -146026148 + MER3 DNA MER1_type 1 209 0 1521 150 0 0 chr11 2757585 2757798 -146025674 + MER1B DNA MER1_type 1 213 -84 315 209 60 0 chr11 2757902 2757969 -146025503 + MER5B DNA MER1_type 108 178 0 1621 172 0 40 chr11 2758003 2758300 -146025172 - MLT1D LTR MaLR 0 505 221 274 167 91 91 chr11 2758297 2758363 -146025109 - MLT1D LTR MaLR -439 66 1 * 563 287 35 0 chr11 2758783 2758985 -146024487 - LTR33 LTR ERVL -7 514 306 458 281 97 42 chr11 2759033 2759250 -146024222 - LTR33 LTR ERVL -292 229 1 1166 162 15 0 chr11 2759279 2759477 -146023995 + L1MB1 LINE L1 5596 5796 -372 3570 111 4 132 chr11 2759477 2760018 -146023454 + MER4D LTR ERV1 1 427 -445 7775 28 17 0 chr11 2760018 2761010 -146022462 - L1PA3 LINE L1 0 6155 5160 3570 111 4 132 chr11 2761010 2761198 -146022274 + MER4D LTR ERV1 427 637 -235 658 175 0 0 chr11 2761349 2761463 -146022009 + AluSg/x SINE Alu 197 310 0 2013 131 37 6 chr11 2761463 2761791 -146021681 + L1MB1 LINE L1 5803 6140 -28 2261 85 0 7 chr11 2761791 2762074 -146021398 - AluSc SINE Alu -15 294 14 348 176 0 44 chr11 2763263 2763331 -146020141 - MER4D LTR ERV1 -455 417 353 4408 156 47 56 chr11 2763387 2764729 -146018743 + L1MB7 LINE L1 4860 6184 0 294 295 67 40 chr11 2764783 2765007 -146018465 - L2 LINE L2 -945 2369 2140 1236 208 0 21 chr11 2766008 2766248 -146017224 - AluJo SINE Alu -77 235 1 247 309 15 0 chr11 2766871 2766939 -146016533 + L2 LINE L2 3231 3299 -14 619 239 46 10 chr11 2767008 2767205 -146016267 + L1MEc LINE L1 1972 2175 -4221 195 42 0 0 chr11 2767385 2767409 -146016063 + (CA)n Simple_repeat Simple_repeat 1 24 0 2436 89 0 19 chr11 2767731 2768044 -146015428 + AluSx SINE Alu 1 307 -5 252 267 9 57 chr11 2768443 2768548 -146014924 + MIR SINE MIR 58 157 -105 876 206 85 45 chr11 2768557 2768685 -146014787 - MER2 DNA MER2_type -4 341 220 2532 57 0 0 chr11 2768685 2768982 -146014490 + AluY SINE Alu 1 297 -14 876 206 85 45 chr11 2768982 2769100 -146014372 - MER2 DNA MER2_type -125 220 85 4282 124 53 49 chr11 2769105 2769765 -146013707 - L1MA5A LINE L1 -4 6293 5628 1963 156 0 16 chr11 2769765 2770079 -146013393 - AluJo SINE Alu -3 309 1 4282 124 53 49 chr11 2770079 2770211 -146013261 - L1MA5A LINE L1 -669 5628 5498 1125 278 87 4 chr11 2770311 2770872 -146012600 - L1MEc LINE L1 -2597 3618 3011 1056 226 62 21 chr11 2771112 2771448 -146012024 - L1MEc LINE L1 -3183 3032 2683 6380 93 5 0 chr11 2771451 2772398 -146011074 - L1PA11 LINE L1 0 6174 5208 937 155 31 0 chr11 2772398 2772559 -146010913 + L1PA11 LINE L1 5060 5225 -921 1500 205 79 79 chr11 2772623 2772641 -146010831 - L1MEc LINE L1 -3539 2676 2659 2205 128 16 0 chr11 2772641 2772947 -146010525 - AluSx SINE Alu -1 311 1 1500 205 79 79 chr11 2772947 2773635 -146009837 - L1MEc LINE L1 -3556 2659 1972 2102 145 0 0 chr11 2773635 2773931 -146009541 - AluSx SINE Alu -16 296 1 1500 205 79 79 chr11 2773931 2773950 -146009522 - L1MEc LINE L1 -4243 1972 1983 356 104 117 13 chr11 2773950 2774027 -146009445 + L1PA4 LINE L1 6071 6155 0 1500 205 79 79 chr11 2774027 2774070 -146009402 - L1MEc LINE L1 -4231 1984 1942 884 227 38 55 chr11 2774066 2774304 -146009168 - L1MEc LINE L1 -6126 270 37 * 738 226 77 18 chr11 2774735 2774903 -146008569 + AluJo SINE Alu 120 297 -15 2275 103 3 0 chr11 2774903 2775194 -146008278 + AluSg SINE Alu 1 292 -18 2285 106 6 6 chr11 2776871 2777183 -146006289 + AluSx SINE Alu 1 312 0 16668 177 66 37 chr11 2777235 2779398 -146004074 - ERVL LTR ERVL -1994 3770 1472 2311 115 0 0 chr11 2779398 2779694 -146003778 - AluSx SINE Alu -16 296 1 16668 177 66 37 chr11 2779694 2780896 -146002576 - ERVL LTR ERVL -4292 1472 307 282 270 56 0 chr11 2780925 2781014 -146002458 + L1M4 LINE L1 842 935 -5607 1756 191 3 3 chr11 2781016 2781325 -146002147 + AluSx SINE Alu 1 309 -3 1735 199 57 14 chr11 2781326 2781814 -146001658 + L1M4 LINE L1 1094 1602 -4940 2091 109 0 4 chr11 2781916 2782191 -146001281 - AluSx SINE Alu -38 274 1 253 217 0 0 chr11 2782327 2782373 -146001099 - L2 LINE L2 -15 3257 3212 208 274 158 18 chr11 2783344 2783508 -145999964 + L2 LINE L2 3127 3313 0 526 267 11 59 chr11 2783571 2783727 -145999745 - MIR SINE MIR -80 182 35 1574 170 60 3 chr11 2783727 2784010 -145999462 - AluJo SINE Alu -13 299 1 526 267 11 59 chr11 2784010 2784040 -145999432 - MIR SINE MIR -227 35 5 1059 235 71 18 chr11 2784340 2784680 -145998792 + L2 LINE L2 2944 3301 -12 199 318 63 0 chr11 2784981 2785044 -145998428 - MIR SINE MIR -46 216 150 * 297 232 134 36 chr11 2785041 2785153 -145998319 + L2 LINE L2 3191 3313 0 295 266 128 9 chr11 2785153 2785262 -145998210 - MIR SINE MIR -66 142 21 340 222 136 25 chr11 2785694 2785856 -145997616 + Charlie7 DNA MER1_type 2427 2606 -6 2441 84 3 0 chr11 2785857 2786153 -145997319 + AluSc SINE Alu 1 297 -12 872 203 122 10 chr11 2786952 2787149 -145996323 + MER20 DNA MER1_type 1 219 0 1667 187 3 10 chr11 2787576 2787870 -145995602 - AluJb SINE Alu -16 296 5 2314 87 0 13 chr11 2787882 2788182 -145995290 - AluSx SINE Alu -6 306 11 1209 94 12 0 chr11 2788182 2788342 -145995130 - AluSg/x SINE Alu -5 305 144 1914 163 3 13 chr11 2788762 2789075 -145994397 - AluJo SINE Alu -2 310 1 593 194 0 0 chr11 2789322 2789430 -145994042 + FLAM_C SINE Alu 3 110 -33 2680 126 12 7 chr11 2789530 2789936 -145993536 - L1PA15 LINE L1 -267 5898 5488 1669 144 88 11 chr11 2789936 2790221 -145993251 - AluJo SINE Alu -5 307 1 331 335 33 42 chr11 2790336 2790551 -145992921 - L1M4 LINE L1 -2574 3572 3360 345 340 205 0 chr11 2791550 2791765 -145991707 - L2 LINE L2 0 3272 3014 331 257 108 12 chr11 2792813 2792962 -145990510 - MIR3 SINE MIR -63 145 3 796 231 74 10 chr11 2793705 2793908 -145989564 - MLT1C LTR MaLR 0 467 252 611 263 58 26 chr11 2793936 2794126 -145989346 - MLT1C LTR MaLR -309 196 1 183 287 69 30 chr11 2795170 2795271 -145988201 + L2 LINE L2 2949 3053 -219 28 0 0 0 chr11 2795753 2795781 -145987691 + AT_rich Low_complexity Low_complexity 1 28 0 2120 132 0 0 chr11 2795784 2796072 -145987400 + AluSx SINE Alu 1 288 -24 1289 131 62 4 chr11 2796075 2796319 -145987153 - L1MA4A LINE L1 -3 6300 6043 189 254 79 0 chr11 2797617 2797680 -145985792 - MIR3 SINE MIR -31 177 110 533 224 209 25 chr11 2797834 2798030 -145985442 + MIR SINE MIR 27 258 -4 402 257 58 134 chr11 2798049 2798310 -145985162 - L2 LINE L2 -2 3270 3030 358 322 115 0 chr11 2798331 2798514 -145984958 - MIR SINE MIR -39 223 20 554 215 76 0 chr11 2798662 2798806 -145984666 + MIR SINE MIR 2 156 -106 479 184 78 0 chr11 2798907 2799010 -145984462 + MIR SINE MIR 152 262 0 414 206 97 45 chr11 2799262 2799417 -145984055 + MER103 DNA DNA 2 164 -2 849 143 8 0 chr11 2799473 2799599 -145983873 + FLAM_C SINE Alu 1 127 -16 394 247 95 47 chr11 2799634 2799824 -145983648 + MIR SINE MIR 63 261 -1 189 74 0 0 chr11 2800293 2800320 -145983152 + (CGG)n Simple_repeat Simple_repeat 3 29 0 885 119 24 54 chr11 2801366 2801534 -145981938 - MLT1A2 LTR MaLR -208 166 4 252 301 75 11 chr11 2802567 2802660 -145980812 + MIR3 SINE MIR 12 110 -98 1114 222 15 11 chr11 2805132 2805402 -145978070 - L1ME1 LINE L1 -5 6161 5891 726 230 125 30 chr11 2805869 2806097 -145977375 - MIR SINE MIR -2 260 16 539 231 66 16 chr11 2806404 2806525 -145976947 - L2 LINE L2 0 3272 3146 513 264 129 11 chr11 2806778 2806956 -145976516 - MIR SINE MIR -51 211 13 289 347 50 8 chr11 2807015 2807136 -145976336 - L2 LINE L2 -5 3267 3142 752 247 36 46 chr11 2807494 2807596 -145975876 + MIR SINE MIR 40 141 -121 2508 56 0 0 chr11 2807596 2807898 -145975574 + AluY SINE Alu 1 302 -9 752 247 36 46 chr11 2807898 2808014 -145975458 + MIR SINE MIR 141 256 -6 322 294 52 59 chr11 2808174 2808310 -145975162 - MIR3 SINE MIR -40 168 34 268 413 0 14 chr11 2809736 2809874 -145973598 - L2 LINE L2 -218 3054 2919 205 182 23 0 chr11 2810670 2810714 -145972758 - L2 LINE L2 -1 3271 3227 235 303 61 0 chr11 2810876 2810942 -145972530 - L2 LINE L2 -215 3057 2988 3626 173 25 23 chr11 2811451 2812178 -145971294 + L1MB5 LINE L1 5447 6174 0 2292 158 88 40 chr11 2812178 2812348 -145971124 + L1MB7 LINE L1 5110 5270 -914 1987 137 0 7 chr11 2812348 2812654 -145970818 + AluSx SINE Alu 2 305 -7 2292 158 88 40 chr11 2812654 2813303 -145970169 + L1MB7 LINE L1 5270 6167 -17 907 139 7 13 chr11 2813313 2813464 -145970008 + Tigger1 DNA MER2_type 1 150 -2268 1340 124 14 5 chr11 2813467 2813676 -145969796 + Tigger1 DNA MER2_type 2208 2418 0 351 234 175 0 chr11 2813750 2813887 -145969585 + MIR3 SINE MIR 41 201 -7 207 285 118 4 chr11 2813981 2814095 -145969377 + MIR SINE MIR 65 192 -16 327 243 0 0 chr11 2814992 2815062 -145968410 + MIR SINE MIR 61 130 -132 320 303 34 25 chr11 2816442 2816561 -145966911 - L2 LINE L2 -20 3252 3133 825 145 23 8 chr11 2816575 2816706 -145966766 + FLAM_C SINE Alu 1 133 0 181 384 36 27 chr11 2817001 2817113 -145966359 + L2 LINE L2 2224 2336 -978 328 270 120 0 chr11 2817185 2817285 -145966187 - MIR SINE MIR -65 143 32 355 271 47 0 chr11 2817639 2817746 -145965726 + MIR SINE MIR 95 206 -56 484 316 199 3 chr11 2817941 2818223 -145965249 + L3 LINE CR1 342 678 -899 391 275 14 84 chr11 2820650 2820792 -145962680 + MIR3 SINE MIR 72 203 -5 187 303 0 30 chr11 2821272 2821338 -145962134 - L2 LINE L2 -665 2649 2586 180 0 0 0 chr11 2821357 2821377 -145962095 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1528 147 45 4 chr11 2821385 2821650 -145961822 - AluJo SINE Alu -36 276 1 307 270 141 38 chr11 2821705 2821890 -145961582 - MIR SINE MIR -25 237 34 198 0 0 0 chr11 2823059 2823081 -145960391 + (T)n Simple_repeat Simple_repeat 1 22 0 411 244 122 28 chr11 2823442 2823622 -145959850 + L2 LINE L2 3117 3313 0 2248 108 0 9 chr11 2824867 2825183 -145958289 + AluSq SINE Alu 1 313 0 2877 216 105 29 chr11 2825257 2826215 -145957257 - L1ME3 LINE L1 -2 6955 5894 1881 157 0 3 chr11 2826215 2826528 -145956944 + AluSx SINE Alu 1 312 0 2877 216 105 29 chr11 2826528 2826679 -145956793 - L1ME3 LINE L1 -1063 5894 5756 632 270 19 5 chr11 2826740 2826951 -145956521 - L1ME3 LINE L1 -3195 3746 3533 621 248 63 46 chr11 2826962 2827602 -145955870 + L1MEc LINE L1 2160 2694 -3452 * 821 260 99 40 chr11 2827596 2828129 -145955343 - L1ME3 LINE L1 -4887 1536 1279 1867 151 3 0 chr11 2828686 2828984 -145954488 - AluJo SINE Alu -13 299 1 417 310 89 47 chr11 2829707 2829920 -145953552 - L3 LINE CR1 0 1577 1356 332 263 58 12 chr11 2829908 2830023 -145953449 - MIR3 SINE MIR -111 97 1 * 226 296 102 0 chr11 2830186 2830284 -145953188 + MIR SINE MIR 57 164 -98 202 291 0 35 chr11 2830579 2830665 -145952807 + CT-rich Low_complexity Low_complexity 1 83 0 252 278 10 41 chr11 2830888 2830985 -145952487 + CT-rich Low_complexity Low_complexity 5 98 0 200 284 0 40 chr11 2833317 2833391 -145950081 + CT-rich Low_complexity Low_complexity 2 72 0 258 304 189 20 chr11 2833876 2834077 -145949395 - MIR SINE MIR -23 239 5 304 318 93 9 chr11 2834242 2834349 -145949123 - L1ME LINE L1 -370 5751 5636 333 100 0 0 chr11 2834907 2834957 -145948515 + (CCA)n Simple_repeat Simple_repeat 2 51 0 503 308 175 45 chr11 2835379 2835966 -145947506 - L2 LINE L2 -1 3271 2585 210 267 17 0 chr11 2836005 2836065 -145947407 - L2 LINE L2 -829 2485 2425 321 321 46 0 chr11 2836143 2836274 -145947198 - MIR SINE MIR -65 143 30 1695 134 52 14 chr11 2837167 2837458 -145946014 + AluJb SINE Alu 1 302 -10 303 296 91 61 chr11 2838406 2838538 -145944934 - MIR SINE MIR -46 216 81 244 313 6 47 chr11 2839112 2839446 -145944026 + CT-rich Low_complexity Low_complexity 1 320 0 483 173 67 0 chr11 2841546 2841650 -145941822 - MER53 DNA DNA 0 189 79 2052 116 0 0 chr11 2841740 2842042 -145941430 - AluSg SINE Alu -2 308 7 698 155 9 0 chr11 2842046 2842162 -145941310 - AluJo SINE Alu -175 137 21 214 205 179 0 chr11 2843529 2843607 -145939865 - MIR SINE MIR -51 211 120 189 262 143 12 chr11 2843934 2844018 -145939454 - L2 LINE L2 -9 3263 3169 1467 181 0 11 chr11 2844228 2844499 -145938973 - AluJo SINE Alu -24 288 21 22 56 0 0 chr11 2844827 2844863 -145938609 + AT_rich Low_complexity Low_complexity 1 36 0 822 106 8 15 chr11 2844863 2844995 -145938477 - FLAM_C SINE Alu -12 131 1 2040 117 23 3 chr11 2845192 2845491 -145937981 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr11 2845648 2845697 -145937775 + AT_rich Low_complexity Low_complexity 1 49 0 1104 157 0 5 chr11 2845780 2845965 -145937507 - AluSg/x SINE Alu -12 300 117 840 181 0 0 chr11 2846458 2846629 -145936843 + CT-rich Low_complexity Low_complexity 4 174 0 277 345 48 21 chr11 2846661 2846806 -145936666 - L2 LINE L2 -34 3279 3131 824 277 59 57 chr11 2846831 2847203 -145936269 - L2 LINE L2 0 3313 2941 1843 104 49 46 chr11 2847323 2847630 -145935842 - AluSx SINE Alu -4 308 1 202 280 133 0 chr11 2848400 2848475 -145934997 - L2 LINE L2 0 3272 3188 1553 140 0 4 chr11 2848523 2848759 -145934713 - MER46A DNA MER2_type 0 236 2 216 250 0 0 chr11 2848815 2848855 -145934617 - MIR SINE MIR -7 255 216 361 257 12 70 chr11 2849223 2849394 -145934078 - L2 LINE L2 -151 3162 3002 380 299 39 74 chr11 2849396 2849503 -145933969 - L2 LINE L2 -415 2899 2790 2016 110 0 42 chr11 2849503 2849813 -145933659 - AluSq SINE Alu -16 297 1 380 299 39 74 chr11 2849813 2849936 -145933536 - L2 LINE L2 -524 2790 2677 2340 55 20 0 chr11 2850564 2850856 -145932616 + AluSx SINE Alu 1 298 -14 387 276 178 18 chr11 2851517 2851680 -145931792 - MIR3 SINE MIR -6 202 14 645 135 31 0 chr11 2851757 2851853 -145931619 + AluJb SINE Alu 10 108 -204 1387 160 30 38 chr11 2851854 2852117 -145931355 - AluSx SINE Alu -51 261 1 1006 178 35 41 chr11 2852119 2852316 -145931156 + AluJb SINE Alu 106 301 -11 333 214 101 11 chr11 2852786 2852875 -145930597 + MIR SINE MIR 84 180 -82 1584 191 0 20 chr11 2853422 2853720 -145929752 - AluJo SINE Alu -20 292 1 1521 142 108 54 chr11 2853758 2854054 -145929418 - AluJo SINE Alu 0 312 1 410 265 12 0 chr11 2854069 2854152 -145929320 - FLAM_A SINE Alu -58 84 1 704 185 0 0 chr11 2854506 2854625 -145928847 + AluJb SINE Alu 1 119 -193 813 114 44 38 chr11 2854765 2854923 -145928549 - AluY SINE Alu -152 159 1 195 160 40 80 chr11 2855001 2855051 -145928421 - L2 LINE L2 -4 3309 3262 437 310 90 29 chr11 2855540 2855850 -145927622 - L1MC4a LINE L1 -1923 5885 5557 2480 72 0 0 chr11 2856048 2856353 -145927119 + AluY SINE Alu 1 305 -6 28 29 0 0 chr11 2856936 2856971 -145926501 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 2857323 2857352 -145926120 + AT_rich Low_complexity Low_complexity 1 29 0 420 269 169 8 chr11 2857728 2857858 -145925614 + MIR SINE MIR 1 151 -111 508 157 0 0 chr11 2857892 2857981 -145925491 - AluSg/x SINE Alu -20 290 202 414 56 0 0 chr11 2858035 2858089 -145925383 + Alu SINE Alu 248 301 -10 227 229 84 36 chr11 2858103 2858186 -145925286 - MIR SINE MIR -36 226 140 213 308 0 39 chr11 2858180 2858284 -145925188 + MIR SINE MIR 162 261 -1 * 495 157 0 12 chr11 2858389 2858472 -145925000 + FLAM SINE Alu 42 123 -20 1670 79 0 19 chr11 2858511 2858727 -145924745 + AluY SINE Alu 85 296 -15 528 116 21 73 chr11 2859549 2859665 -145923807 + L1MB8 LINE L1 6049 6150 -34 2003 128 7 10 chr11 2859665 2859961 -145923511 - AluSx SINE Alu -15 297 3 528 116 21 73 chr11 2859961 2859995 -145923477 + L1MB8 LINE L1 6150 6184 0 240 413 9 0 chr11 2859996 2860105 -145923367 - L2 LINE L2 -661 2653 2544 730 238 0 7 chr11 2860120 2860263 -145923209 + FRAM SINE Alu 1 142 -34 234 271 28 28 chr11 2860408 2860515 -145922957 + L1ME LINE L1 3765 3871 -2275 447 298 88 0 chr11 2860631 2860846 -145922626 + L1ME LINE L1 4111 4344 -1802 2057 148 29 18 chr11 2860871 2861145 -145922327 - Tigger3(Golem) DNA MER2_type 0 3028 2747 2187 116 0 25 chr11 2861145 2861463 -145922009 + AluSx SINE Alu 1 310 -2 2057 148 29 18 chr11 2861463 2861572 -145921900 - Tigger3(Golem) DNA MER2_type -281 2747 2641 599 231 15 0 chr11 2861573 2861703 -145921769 + FLAM_A SINE Alu 1 132 -1 369 105 35 0 chr11 2861703 2861760 -145921712 + AluSq SINE Alu 134 192 -111 1885 153 0 7 chr11 2862116 2862403 -145921069 - AluSx SINE Alu -25 287 3 237 289 0 0 chr11 2862471 2862547 -145920925 + L1ME LINE L1 4534 4609 -1537 805 227 135 40 chr11 2862567 2862897 -145920575 + MLT1D LTR MaLR 1 363 -142 2282 92 0 0 chr11 2862957 2863249 -145920223 - AluSq SINE Alu -21 292 1 1892 129 4 11 chr11 2863736 2864015 -145919457 + AluSx SINE Alu 35 311 -1 928 275 75 8 chr11 2864067 2864080 -145919392 + L1ME LINE L1 5291 5302 -864 1839 175 13 0 chr11 2864080 2864388 -145919084 + AluJo SINE Alu 1 312 0 928 275 75 8 chr11 2864388 2864859 -145918613 + L1ME LINE L1 5302 5822 -344 199 311 39 19 chr11 2865154 2865257 -145918215 - L2 LINE L2 -1680 1634 1530 429 312 81 29 chr11 2865917 2866090 -145917382 + MIR3 SINE MIR 20 201 -7 398 230 50 0 chr11 2866121 2866221 -145917251 - MIR SINE MIR -12 250 146 437 273 62 8 chr11 2866238 2866366 -145917106 - MIR SINE MIR -74 188 54 326 296 35 52 chr11 2866425 2866540 -145916932 + MIR SINE MIR 34 146 -62 682 150 8 132 chr11 2867446 2867671 -145915801 - L1ME2 LINE L1 -12 6152 5955 1659 177 27 10 chr11 2867759 2868058 -145915414 - AluJo SINE Alu -8 304 1 1585 186 0 43 chr11 2868116 2868439 -145915033 + AluJb SINE Alu 1 309 -3 2322 125 0 0 chr11 2869983 2870287 -145913185 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr11 2870540 2870562 -145912910 + AT_rich Low_complexity Low_complexity 1 22 0 653 164 0 0 chr11 2871116 2871226 -145912246 + AluJb SINE Alu 199 308 -4 189 330 152 36 chr11 2871844 2871956 -145911516 - L2 LINE L2 -14 3258 3134 349 304 0 0 chr11 2871992 2872084 -145911388 + L2 LINE L2 2679 2770 -544 1394 113 34 119 chr11 2872187 2872299 -145911173 - L1MB7 LINE L1 -45 6139 6019 2505 76 0 0 chr11 2872299 2872602 -145910870 - AluSc SINE Alu -4 305 3 1394 113 34 119 chr11 2872602 2872843 -145910629 - L1MB7 LINE L1 -165 6019 5816 789 270 54 32 chr11 2872847 2873209 -145910263 + L2 LINE L2 2776 3138 -175 229 328 121 17 chr11 2873380 2873496 -145909976 - L2 LINE L2 -4 3268 3141 493 126 223 0 chr11 2873634 2873737 -145909735 + MER3 DNA MER1_type 83 208 -1 25 0 0 0 chr11 2873960 2873985 -145909487 + AT_rich Low_complexity Low_complexity 1 25 0 1020 243 100 43 chr11 2874692 2875133 -145908339 + MLT1C LTR MaLR 1 466 -1 703 216 115 16 chr11 2875235 2875538 -145907934 - MLT1E1 LTR MaLR -44 610 210 766 156 8 8 chr11 2875558 2875686 -145907786 - AluSx SINE Alu -12 298 171 923 124 0 0 chr11 2875686 2875807 -145907665 - AluSx SINE Alu -191 122 2 884 190 82 0 chr11 2875808 2876003 -145907469 - MLT1E1 LTR MaLR -437 217 7 196 271 50 86 chr11 2876643 2876783 -145906689 + MIR SINE MIR 128 262 0 250 256 96 45 chr11 2877268 2877424 -145906048 - L1ME4a LINE L1 -18 6103 5940 192 40 0 0 chr11 2877458 2877483 -145905989 + (TA)n Simple_repeat Simple_repeat 1 25 0 2040 143 14 0 chr11 2877810 2878096 -145905376 + AluSx SINE Alu 1 290 -22 208 338 62 12 chr11 2878270 2878350 -145905122 - MIR SINE MIR -119 143 60 22 35 0 0 chr11 2878366 2878395 -145905077 + AT_rich Low_complexity Low_complexity 1 29 0 2217 129 30 3 chr11 2878416 2878780 -145904692 - THE1C LTR MaLR 0 375 2 188 195 0 24 chr11 2879475 2879516 -145903956 + L2 LINE L2 3274 3313 0 312 230 0 48 chr11 2879659 2879773 -145903699 + MER5B DNA MER1_type 1 174 -4 462 178 9 19 chr11 2879945 2880052 -145903420 - L1MA9 LINE L1 0 6312 6207 1114 113 0 19 chr11 2880078 2880237 -145903235 - AluSg/x SINE Alu -25 285 130 577 253 29 58 chr11 2880756 2880869 -145902603 + MER5B DNA MER1_type 2 110 -68 2166 89 52 0 chr11 2880869 2881160 -145902312 - AluSx SINE Alu -6 306 1 577 253 29 58 chr11 2881160 2881220 -145902252 + MER5B DNA MER1_type 110 170 -8 248 283 181 65 chr11 2882749 2882887 -145900585 - L2 LINE L2 -16 3256 3103 1961 151 7 0 chr11 2883123 2883407 -145900065 - AluSx SINE Alu -26 286 1 951 59 7 13 chr11 2883516 2883668 -145899804 - SVA Other Other -520 866 716 2992 154 75 6 chr11 2884547 2884892 -145898580 - L1MB4 LINE L1 -8 6172 5852 1723 151 37 40 chr11 2884892 2885191 -145898281 - AluSx SINE Alu -12 300 3 2992 154 75 6 chr11 2885191 2885488 -145897984 - L1MB4 LINE L1 -328 5852 5486 735 166 36 67 chr11 2885493 2885686 -145897786 - AluJo SINE Alu -9 303 117 2398 190 54 41 chr11 2885705 2886476 -145896996 - L1M4c LINE L1 -4839 1703 930 1726 186 3 3 chr11 2886476 2886771 -145896701 - AluSx SINE Alu -17 295 1 2398 190 54 41 chr11 2886771 2886862 -145896610 - L1M4c LINE L1 -5612 930 842 358 218 0 0 chr11 2886891 2886969 -145896503 + ERVL LTR ERVL 307 384 -5380 250 256 96 45 chr11 2887477 2887633 -145895839 - L1ME4a LINE L1 -18 6103 5940 192 40 0 0 chr11 2887668 2887693 -145895779 + (TA)n Simple_repeat Simple_repeat 1 25 0 2040 143 14 0 chr11 2888019 2888305 -145895167 + AluSx SINE Alu 1 290 -22 208 319 57 22 chr11 2888479 2888569 -145894903 - MIR SINE MIR -66 142 52 22 35 0 0 chr11 2888576 2888605 -145894867 + AT_rich Low_complexity Low_complexity 1 29 0 2379 113 30 0 chr11 2888626 2888989 -145894483 - THE1C LTR MaLR 0 375 2 580 230 46 75 chr11 2890422 2890535 -145892937 + MER5B DNA MER1_type 2 110 -68 2166 89 52 0 chr11 2890535 2890826 -145892646 - AluSx SINE Alu -6 306 1 580 230 46 75 chr11 2890826 2890886 -145892586 + MER5B DNA MER1_type 110 170 -8 248 283 181 65 chr11 2892416 2892554 -145890918 - L2 LINE L2 -16 3256 3103 1961 151 7 0 chr11 2892790 2893074 -145890398 - AluSx SINE Alu -26 286 1 220 48 48 24 chr11 2893081 2893123 -145890349 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 618 167 87 80 chr11 2893125 2893275 -145890197 - AluSg/x SINE Alu -25 285 135 210 37 0 0 chr11 2893285 2893312 -145890160 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6370 73 37 43 chr11 2893326 2894500 -145888972 - SVA Other Other -518 1383 432 951 59 7 13 chr11 2894517 2894669 -145888803 - SVA Other Other -520 866 716 3160 149 21 21 chr11 2895591 2896242 -145887230 - L1MA4A LINE L1 -348 7017 6367 * 40091 32 24 2 chr11 2896236 2902260 -145881212 - L1PA3 LINE L1 -10 6145 2 4237 196 16 22 chr11 2902261 2903042 -145880430 - L1MA4A LINE L1 -815 6393 5618 2261 104 13 13 chr11 2903042 2903351 -145880121 - AluSx SINE Alu -3 309 1 4237 196 16 22 chr11 2903351 2903512 -145879960 - L1MA4A LINE L1 -1590 5618 5457 387 173 0 0 chr11 2903521 2903596 -145879876 - L1MA5A LINE L1 0 6297 6223 4603 196 24 8 chr11 2903601 2904142 -145879330 - L1MA4A LINE L1 -3024 4184 3618 1463 118 50 5 chr11 2904142 2904362 -145879110 + MER30 DNA MER1_type 1 230 0 4603 196 24 8 chr11 2904362 2904837 -145878635 - L1MA4A LINE L1 -3590 3618 3152 1989 210 95 24 chr11 2904834 2905530 -145877942 - L1MA4A LINE L1 -5737 1472 741 * 227 275 11 44 chr11 2905505 2905596 -145877876 - L1M2b LINE L1 -6064 1145 1058 * 274 269 190 5 chr11 2905970 2906128 -145877344 - MIR SINE MIR -50 212 34 1904 156 73 43 chr11 2906389 2906760 -145876712 + MSTD LTR MaLR 6 387 -9 458 275 53 5 chr11 2907273 2907462 -145876010 - MIR SINE MIR -12 250 53 291 246 133 0 chr11 2908451 2908566 -145874906 + MIR SINE MIR 37 165 -63 202 184 0 0 chr11 2908577 2908615 -145874857 - L2 LINE L2 0 3313 3276 214 326 0 20 chr11 2908651 2908749 -145874723 + MIR SINE MIR 162 257 -5 * 468 241 150 9 chr11 2908681 2908901 -145874571 - MIR SINE MIR 0 262 16 405 165 156 55 chr11 2911381 2911490 -145871982 - FRAM SINE Alu -11 165 46 6203 205 55 59 chr11 2912151 2913076 -145870396 - L1MC4 LINE L1 -1 8041 7114 543 101 0 0 chr11 2913076 2913155 -145870317 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 6203 205 55 59 chr11 2913155 2913584 -145869888 - L1MC4 LINE L1 -928 7114 6685 207 100 0 0 chr11 2913584 2913614 -145869858 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 6203 205 55 59 chr11 2913614 2914170 -145869302 - L1MC4 LINE L1 -1357 6685 6041 3106 231 32 14 chr11 2914714 2915495 -145867977 - L1MC4a LINE L1 -1759 6049 5255 2283 107 0 0 chr11 2915555 2915854 -145867618 - AluSx SINE Alu -13 299 1 68 42 0 0 chr11 2915871 2915967 -145867505 + AT_rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr11 2916683 2916707 -145866765 + AT_rich Low_complexity Low_complexity 1 24 0 2296 119 28 0 chr11 2916717 2917070 -145866402 - L1PB1 LINE L1 -7 6144 5782 186 125 0 54 chr11 2917070 2917126 -145866346 + (TA)n Simple_repeat Simple_repeat 2 54 0 4293 155 33 1 chr11 2917126 2918471 -145865001 - L1PB1 LINE L1 -359 5792 4400 323 315 15 39 chr11 2918672 2918802 -145864670 + MER89-int LTR ERV1 3794 3920 -2881 2295 128 6 0 chr11 2918897 2919242 -145864230 - L1PA13 LINE L1 -5 6158 5812 1998 304 88 28 chr11 2919261 2920200 -145863272 + MER89-int LTR ERV1 1969 2964 -1683 271 357 27 37 chr11 2920854 2921338 -145862134 - L1MC4 LINE L1 -265 5856 5378 2163 88 35 7 chr11 2922715 2922998 -145860474 + AluY SINE Alu 1 291 -20 1796 75 13 0 chr11 2923231 2923458 -145860014 + AluSq SINE Alu 74 303 -10 248 284 131 34 chr11 2923821 2923997 -145859475 + MIR SINE MIR 19 211 -51 2313 81 0 60 chr11 2924736 2925068 -145858404 + AluSx SINE Alu 1 312 0 195 42 0 0 chr11 2925561 2925585 -145857887 + (T)n Simple_repeat Simple_repeat 1 24 0 327 25 0 0 chr11 2926700 2926740 -145856732 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 180 16 33 chr11 2928714 2928775 -145854697 + T-rich Low_complexity Low_complexity 5 64 0 662 159 38 30 chr11 2930375 2930507 -145852965 - AluJb SINE Alu -178 134 2 22 70 0 0 chr11 2930832 2930875 -145852597 + AT_rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr11 2932433 2932478 -145850994 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 358 142 11 chr11 2933007 2933281 -145850191 + L2 LINE L2 2553 2862 -452 251 255 60 81 chr11 2933320 2933469 -145850003 + L2 LINE L2 2916 3061 -211 2369 83 0 0 chr11 2934027 2934316 -145849156 - AluSx SINE Alu -23 289 1 2040 82 7 0 chr11 2935886 2936156 -145847316 + L1PA6 LINE L1 5879 6150 -4 2940 92 29 22 chr11 2936946 2937391 -145846081 - LTR7 LTR ERV1 -2 448 1 2332 95 68 14 chr11 2937391 2937761 -145845711 - HERVH LTR ERV1 0 7713 7324 1416 99 20 0 chr11 2937761 2937962 -145845510 - HERVH LTR ERV1 -1894 5819 5615 3133 124 0 2 chr11 2937997 2938611 -145844861 - HERVH LTR ERV1 -2564 5149 4489 9326 180 66 54 chr11 2938614 2942518 -145840954 - HERVH LTR ERV1 -3720 3993 1 2976 87 27 22 chr11 2942521 2942967 -145840505 - LTR7 LTR ERV1 -2 448 1 242 306 51 0 chr11 2943285 2943383 -145840089 + L2 LINE L2 2580 2682 -632 1398 180 48 0 chr11 2943522 2943772 -145839700 + AluJo SINE Alu 37 298 -14 310 326 85 14 chr11 2944042 2944183 -145839289 - L2 LINE L2 -11 3261 3111 1234 226 39 33 chr11 2944291 2944653 -145838819 + L1ME LINE L1 5296 5659 -503 2583 191 52 93 chr11 2944950 2945706 -145837766 - MER50 LTR ERV1 0 734 10 687 215 99 40 chr11 2946171 2946394 -145837078 + MER106A DNA MER1_type 1 236 0 294 296 64 55 chr11 2946417 2946637 -145836835 + HAL1b LINE L1 302 523 -825 370 286 0 36 chr11 2947350 2947462 -145836010 - MER5B DNA MER1_type -70 108 1 180 283 0 0 chr11 2948330 2948376 -145835096 - MER5B DNA MER1_type -126 52 7 489 225 131 25 chr11 2948392 2948552 -145834920 - MER5A DNA MER1_type -6 183 7 4349 168 72 2 chr11 2948582 2949367 -145834105 - MER6 DNA MER2_type 0 865 21 1873 170 0 10 chr11 2949367 2949673 -145833799 + AluJb SINE Alu 1 303 -9 4349 168 72 2 chr11 2949673 2949696 -145833776 - MER6 DNA MER2_type -844 21 1 684 99 0 0 chr11 2949809 2949910 -145833562 - MER6 DNA MER2_type -189 676 576 601 260 99 55 chr11 2950145 2950561 -145832911 - MER20B DNA MER1_type -166 617 184 341 303 26 62 chr11 2951702 2951897 -145831575 - MIR SINE MIR -7 255 68 29 0 0 0 chr11 2951948 2951977 -145831495 + AT_rich Low_complexity Low_complexity 1 29 0 338 293 70 37 chr11 2952541 2952814 -145830658 - MER65A LTR ERV1 -3 442 161 227 214 36 0 chr11 2953007 2953063 -145830409 - L1MC3 LINE L1 -551 7628 7571 264 273 10 30 chr11 2953065 2953164 -145830308 - MLT1F1 LTR MaLR -456 111 15 1146 239 53 67 chr11 2953170 2953894 -145829578 - L1MC3 LINE L1 -720 7459 1421 988 180 5 37 chr11 2953950 2954139 -145829333 + AluJo SINE Alu 1 183 -129 569 274 59 0 chr11 2954150 2954303 -145829169 - L1MC/D LINE L1 -2194 5614 5453 226 275 0 33 chr11 2954372 2954463 -145829009 + MLT1H LTR MaLR 84 171 -378 1256 120 0 22 chr11 2954595 2954778 -145828694 + AluSg/x SINE Alu 122 300 -12 234 0 0 0 chr11 2954783 2954809 -145828663 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 4068 170 82 11 chr11 2954951 2954963 -145828509 - MER6 DNA MER2_type -29 836 826 1898 103 14 21 chr11 2954963 2955244 -145828228 - AluSq SINE Alu -30 283 5 4068 170 82 11 chr11 2955244 2955989 -145827483 - MER6 DNA MER2_type -39 826 20 2085 129 0 22 chr11 2955989 2956300 -145827172 + AluJb SINE Alu 1 304 -8 4068 170 82 11 chr11 2956300 2956322 -145827150 - MER6 DNA MER2_type -845 20 1 674 86 0 38 chr11 2956435 2956498 -145826974 - MER6 DNA MER2_type -189 676 617 1936 144 10 3 chr11 2956498 2956789 -145826683 + AluSx SINE Alu 1 293 -19 674 86 0 38 chr11 2956789 2956830 -145826642 - MER6 DNA MER2_type -248 617 576 376 268 98 49 chr11 2957063 2957369 -145826103 - MER20B DNA MER1_type -195 588 268 313 313 26 62 chr11 2958585 2958780 -145824692 - MIR SINE MIR -7 255 68 27 0 0 0 chr11 2958831 2958858 -145824614 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr11 2959266 2959302 -145824170 + AT_rich Low_complexity Low_complexity 1 36 0 361 290 67 60 chr11 2959610 2959893 -145823579 - MER65A LTR ERV1 0 445 161 281 301 52 15 chr11 2960000 2960136 -145823336 - MER65B LTR ERV1 -390 141 1 189 322 43 52 chr11 2960404 2960519 -145822953 - L2 LINE L2 -1834 1480 1367 240 283 167 43 chr11 2960736 2961150 -145822322 - L2 LINE L2 -2211 1103 639 9704 65 16 82 chr11 2961865 2963348 -145820124 - SVA Other Other 0 1386 1 1256 120 0 22 chr11 2963353 2963536 -145819936 - AluSg/x SINE Alu -12 298 120 267 255 0 32 chr11 2963668 2963762 -145819710 - MLT1H LTR MaLR -378 171 81 502 301 59 0 chr11 2963831 2963984 -145819488 + L1MC3 LINE L1 5453 5614 -2194 959 185 5 37 chr11 2963995 2964184 -145819288 - AluJo SINE Alu -129 183 1 443 278 53 47 chr11 2964240 2964578 -145818894 + L1MDa LINE L1 1421 1760 -4780 * 1978 205 58 42 chr11 2964577 2965124 -145818348 + L1MC3 LINE L1 6675 7230 -555 256 261 45 23 chr11 2965126 2965214 -145818258 + MER65B LTR ERV1 52 141 -390 366 291 65 38 chr11 2965334 2965595 -145817877 + MER65A LTR ERV1 175 442 -3 26 0 0 0 chr11 2966159 2966185 -145817287 + AT_rich Low_complexity Low_complexity 1 26 0 326 308 26 62 chr11 2966236 2966431 -145817041 + MIR SINE MIR 68 255 -7 1855 130 16 16 chr11 2966899 2967221 -145816251 - L1 LINE L1 -908 5238 4917 595 196 0 0 chr11 2967221 2967313 -145816159 - MER2 DNA MER2_type -252 93 2 355 292 10 0 chr11 2967321 2967417 -145816055 + MIR SINE MIR 163 259 -3 670 171 137 0 chr11 2967450 2967567 -145815905 + FLAM_C SINE Alu 1 133 0 4876 146 58 16 chr11 2969125 2970061 -145813411 + L1MA8 LINE L1 5315 6289 -2 366 345 77 5 chr11 2973045 2973254 -145810218 - MIR SINE MIR -5 257 34 636 250 48 30 chr11 2974879 2975222 -145808250 - L1MDa LINE L1 -4811 1571 1173 740 256 26 42 chr11 2975229 2975431 -145808041 - L1MC/D LINE L1 -605 5561 5443 523 273 125 30 chr11 2975445 2975709 -145807763 + MLT1H LTR MaLR 17 305 -244 273 283 81 30 chr11 2975746 2975845 -145807627 + L2 LINE L2 3205 3308 -5 2293 83 7 0 chr11 2976072 2976361 -145807111 + AluSq SINE Alu 1 291 -22 3807 164 45 10 chr11 2976684 2977402 -145806070 - L1MA8 LINE L1 -3 6288 5546 21 0 0 0 chr11 2977681 2977702 -145805770 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 2977814 2977846 -145805626 + AT_rich Low_complexity Low_complexity 1 32 0 239 246 27 27 chr11 2977946 2978056 -145805416 + L1ME LINE L1 5677 5786 -376 199 194 83 69 chr11 2978084 2978156 -145805316 - L2 LINE L2 -5 3308 3236 596 228 10 56 chr11 2978176 2978373 -145805099 + L1MA9 LINE L1 6095 6282 -30 212 333 69 0 chr11 2979466 2979553 -145803919 + MIR SINE MIR 30 122 -86 255 176 39 0 chr11 2979588 2979639 -145803833 - MER58A DNA MER1_type -1 223 171 656 238 0 0 chr11 2979652 2979774 -145803698 - MER58A DNA MER1_type 0 122 1 234 0 0 0 chr11 2980206 2980232 -145803240 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 254 90 15 chr11 2980241 2980308 -145803164 - MIR SINE MIR -190 72 1 251 250 204 0 chr11 2980437 2980545 -145802927 + MIR SINE MIR 69 198 -64 207 339 43 0 chr11 2980865 2980980 -145802492 - L2 LINE L2 -1668 1646 1527 354 307 66 48 chr11 2981174 2981340 -145802132 + MIR SINE MIR 55 223 -39 218 342 34 68 chr11 2981340 2981606 -145801866 + L2 LINE L2 2624 2880 -434 200 368 28 28 chr11 2982098 2982204 -145801268 - MIR SINE MIR -67 141 36 342 0 0 0 chr11 2983345 2983383 -145800089 + (T)n Simple_repeat Simple_repeat 1 38 0 330 235 76 50 chr11 2983480 2983599 -145799873 + MIR SINE MIR 8 129 -133 1505 194 48 50 chr11 2985006 2985402 -145798070 - MLT2C1 LTR ERVL -2 395 1 338 185 15 0 chr11 2985426 2985491 -145797981 - L1 LINE L1 -1092 5054 4989 30 27 0 0 chr11 2985628 2985665 -145797807 + AT_rich Low_complexity Low_complexity 1 37 0 825 180 24 120 chr11 2986225 2986475 -145796997 - LTR8A LTR ERV1 -468 259 34 1849 125 42 0 chr11 2986487 2986774 -145796698 - L1PA16 LINE L1 -5 6161 5863 767 288 132 20 chr11 2986832 2987235 -145796237 - L1ME4a LINE L1 -217 5904 5457 27 0 0 0 chr11 2988970 2988997 -145794475 + AT_rich Low_complexity Low_complexity 1 27 0 1759 110 98 0 chr11 2991645 2991927 -145791545 + AluSp SINE Alu 4 310 0 245 220 20 0 chr11 2992054 2992104 -145791368 - MIR3 SINE MIR -7 201 151 258 270 16 0 chr11 2992106 2992169 -145791303 - MER113 DNA MER1_type? -4 517 454 297 128 0 0 chr11 2992717 2992764 -145790708 + (CA)n Simple_repeat Simple_repeat 2 48 0 7011 124 20 8 chr11 2994589 2996290 -145787182 + L1MA3 LINE L1 4583 6305 0 231 132 0 57 chr11 2996298 2996351 -145787121 + (TAAAAA)n Simple_repeat Simple_repeat 2 51 0 2234 102 0 0 chr11 2996353 2996658 -145786814 + AluSx SINE Alu 1 305 0 180 152 0 0 chr11 2997053 2997086 -145786386 + (TATG)n Simple_repeat Simple_repeat 2 34 0 224 235 0 44 chr11 2997773 2997841 -145785631 + G-rich Low_complexity Low_complexity 6 70 0 22 0 0 0 chr11 2998353 2998375 -145785097 + AT_rich Low_complexity Low_complexity 1 22 0 6518 114 26 48 chr11 2998412 2999758 -145783714 - L1MA3 LINE L1 0 6305 4987 * 7209 54 13 1 chr11 2999732 3000856 -145782616 - L1PA5 LINE L1 -2 6152 5018 367 0 0 0 chr11 3000856 3000897 -145782575 + L1P LINE L1 1264 1304 -4842 * 17633 111 13 19 chr11 3000894 3004802 -145778670 + L1PA7 LINE L1 252 4182 -2279 616 122 0 0 chr11 3004803 3004901 -145778571 - L1P LINE L1 -2793 3353 3256 * 42872 53 8 1 chr11 3004895 3011013 -145772459 - L1PA4 LINE L1 -4 6151 1 517 146 39 0 chr11 3011020 3011123 -145772349 - L1P LINE L1 -2889 3257 3151 11397 78 29 16 chr11 3011123 3013390 -145770082 + L1PA7 LINE L1 4185 6465 -4 227 316 13 0 chr11 3013462 3013541 -145769931 - MIR SINE MIR -110 152 73 1985 181 16 8 chr11 3014599 3014969 -145768503 + L1MD3 LINE L1 7623 7995 0 2520 78 0 0 chr11 3015662 3015970 -145767502 - AluY SINE Alu -3 308 1 575 315 50 0 chr11 3016907 3017088 -145766384 - MIR SINE MIR -65 197 8 231 167 0 0 chr11 3017358 3017400 -145766072 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 357 186 36 14 chr11 3018417 3018557 -145764915 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 3282 237 60 10 chr11 3019399 3020261 -145763211 + L1ME3A LINE L1 5258 6162 -8 318 322 67 52 chr11 3021391 3021658 -145761814 + MARNA DNA Mariner 280 550 -36 527 242 8 8 chr11 3023752 3023876 -145759596 + L2 LINE L2 3187 3310 -3 556 251 70 20 chr11 3025525 3025697 -145757775 + MIR SINE MIR 41 217 -45 1647 85 55 4 chr11 3026777 3027013 -145756459 - L1MA1 LINE L1 0 6302 6055 557 283 108 14 chr11 3027063 3027209 -145756263 + L2 LINE L2 1783 1914 -1400 2301 156 27 16 chr11 3027209 3027580 -145755892 - THE1C LTR MaLR 0 375 1 557 283 108 14 chr11 3027580 3027719 -145755753 + L2 LINE L2 1914 2095 -1219 844 162 45 28 chr11 3027939 3028249 -145755223 + THE1C LTR MaLR 1 375 0 1496 224 55 33 chr11 3028289 3028655 -145754817 - MLT1A2 LTR MaLR 0 374 1 280 275 83 33 chr11 3028935 3029055 -145754417 + LTR16A1 LTR ERVL 330 455 -2 1992 242 92 70 chr11 3029732 3030469 -145753003 + L1MB8 LINE L1 3059 3779 -2367 2020 125 0 0 chr11 3030469 3030750 -145752722 + AluSx SINE Alu 32 312 0 1992 242 92 70 chr11 3030750 3030981 -145752491 + L1MB8 LINE L1 3779 4004 -2142 465 148 34 23 chr11 3030981 3031069 -145752403 + L1MA10 LINE L1 6238 6326 -8 1992 242 92 70 chr11 3031069 3031080 -145752392 + L1MB8 LINE L1 4004 4013 -2133 3396 185 28 17 chr11 3031080 3031771 -145751701 + L1MB8 LINE L1 5481 6178 0 1992 242 92 70 chr11 3031771 3031855 -145751617 + L1MB8 LINE L1 4013 4147 -1999 525 280 63 5 chr11 3031863 3032052 -145751420 + L1ME2 LINE L1 4579 4778 -1368 1314 237 188 26 chr11 3032069 3032332 -145751140 + L1ME2 LINE L1 4856 5075 -1089 1614 151 3 69 chr11 3032332 3032651 -145750821 + AluJb SINE Alu 1 298 -14 1314 237 188 26 chr11 3032651 3033397 -145750075 + L1ME2 LINE L1 5075 6087 -77 1670 137 78 18 chr11 3033397 3033681 -145749791 - AluJo SINE Alu -11 301 1 1314 237 188 26 chr11 3033681 3033774 -145749698 + L1ME2 LINE L1 6087 6164 0 236 288 17 0 chr11 3034090 3034149 -145749323 + L2 LINE L2 3196 3255 -17 1098 219 44 9 chr11 3034446 3034674 -145748798 - MER8 DNA MER2_type -3 236 1 23 33 0 0 chr11 3036757 3036787 -145746685 + AT_rich Low_complexity Low_complexity 1 30 0 425 250 43 43 chr11 3039089 3039253 -145744219 + MIR SINE MIR 23 186 -76 928 122 122 0 chr11 3039948 3040104 -145743368 - MER30 DNA MER1_type -55 175 1 264 315 0 0 chr11 3040177 3040269 -145743203 + MIR SINE MIR 167 258 -4 371 323 65 26 chr11 3040282 3040437 -145743035 - L2 LINE L2 -8 3264 3104 237 304 244 7 chr11 3040753 3040888 -145742584 + MIR SINE MIR 83 249 -13 421 277 62 28 chr11 3041515 3041692 -145741780 - L2 LINE L2 -8 3305 3123 1254 161 70 21 chr11 3041693 3041935 -145741537 + L1M2 LINE L1 5459 5712 -579 4361 144 57 32 chr11 3041947 3042280 -145741192 + L1MA8 LINE L1 5458 5781 -510 216 0 0 0 chr11 3042280 3042304 -145741168 + (CA)n Simple_repeat Simple_repeat 1 24 0 4361 144 57 32 chr11 3042304 3042783 -145740689 + L1MA8 LINE L1 5781 6290 -1 1154 304 82 25 chr11 3042789 3043588 -145739884 - L2 LINE L2 -179 3134 2292 7156 46 17 2 chr11 3043593 3044489 -145738983 - L1PA5 LINE L1 -1027 5119 4211 7803 46 3 1 chr11 3044489 3045507 -145737965 + L1PA5 LINE L1 5136 6152 -2 253 157 229 29 chr11 3045507 3045577 -145737895 - MER5A DNA MER1_type -97 92 9 192 77 0 0 chr11 3045617 3045643 -145737829 + (A)n Simple_repeat Simple_repeat 1 26 0 394 259 299 11 chr11 3045645 3045919 -145737553 - L2 LINE L2 -1028 2286 1934 1222 134 24 14 chr11 3045923 3046132 -145737340 + L1PB1 LINE L1 5941 6151 0 1959 190 61 10 chr11 3046146 3046831 -145736641 + L1M3 LINE L1 4898 5614 -566 228 220 125 56 chr11 3047323 3047485 -145735987 - MIR SINE MIR -70 192 17 570 147 0 40 chr11 3047646 3047796 -145735676 + (AGGGGG)n Simple_repeat Simple_repeat 5 148 0 1400 166 14 0 chr11 3048984 3049207 -145734265 + MER1B DNA MER1_type 1 226 -71 1072 124 16 32 chr11 3050161 3050346 -145733126 + L1PA13 LINE L1 5982 6163 0 600 63 13 0 chr11 3050822 3050901 -145732571 - MADE1 DNA Mariner 0 80 1 1056 294 95 27 chr11 3051116 3051717 -145731755 - L2 LINE L2 -422 2892 2251 205 191 16 48 chr11 3051777 3051840 -145731632 + GA-rich Low_complexity Low_complexity 5 65 0 314 329 72 6 chr11 3051851 3052018 -145731454 - L2 LINE L2 -1424 1890 1713 291 397 49 0 chr11 3054872 3055056 -145728416 - L3 LINE CR1 -61 1516 1324 3591 166 68 7 chr11 3055774 3056493 -145726979 - L1MA4 LINE L1 -11 6289 5527 3839 122 28 18 chr11 3056493 3057100 -145726372 + MER50-int LTR ERV1 6591 7203 -2 2533 185 41 126 chr11 3057100 3057717 -145725755 + MER50 LTR ERV1 10 549 -185 2029 152 3 0 chr11 3057717 3058026 -145725446 - AluSx SINE Alu 0 312 3 2533 185 41 126 chr11 3058026 3058187 -145725285 + MER50 LTR ERV1 549 722 -12 1374 174 123 119 chr11 3058227 3058772 -145724700 + LTR10B LTR ERV1 1 547 0 7321 250 41 28 chr11 3058772 3063614 -145719858 + LTR10B-int LTR ERV1 5 3922 -2727 803 174 48 48 chr11 3063623 3063790 -145719682 - LTR5 LTR ERVK -14 955 789 598 174 0 109 chr11 3063834 3063972 -145719500 - HERVKC4 LTR ERVK -4526 736 614 * 4039 172 20 6 chr11 3063942 3064644 -145718828 - HERVKC4 LTR ERVK -6531 712 1 3623 204 21 63 chr11 3064656 3065649 -145717823 - LTR5 LTR ERVK -14 955 5 3898 277 13 17 chr11 3065651 3066719 -145716753 + LTR10B-int LTR ERV1 4941 6004 -1781 6404 239 21 27 chr11 3066832 3068424 -145715048 + LTR10B-int LTR ERV1 5068 6649 0 338 153 68 126 chr11 3068478 3068668 -145714804 + LTR10B LTR ERV1 107 285 -262 1319 174 41 16 chr11 3068727 3068969 -145714503 + LTR10B LTR ERV1 300 547 0 4234 236 117 92 chr11 3068970 3069557 -145713915 + MSTC-int LTR MaLR 76 647 -1088 3743 158 49 29 chr11 3069557 3070215 -145713257 + LTR51 LTR ERV1 1 671 0 4234 236 117 92 chr11 3070215 3071245 -145712227 + MSTC-int LTR MaLR 647 1733 -2 2224 146 72 46 chr11 3071252 3071669 -145711803 + MSTC LTR MaLR 1 428 0 184 333 36 12 chr11 3073552 3073636 -145709836 - L2 LINE L2 -36 3277 3192 447 327 146 16 chr11 3074004 3074374 -145709098 - L2 LINE L2 -640 2674 2257 1581 294 153 59 chr11 3074473 3075739 -145707733 + L2 LINE L2 1614 2987 -285 289 297 156 23 chr11 3076596 3076852 -145706620 - L2 LINE L2 -1160 2154 1865 2138 91 0 0 chr11 3077089 3077376 -145706096 + AluY SINE Alu 1 287 -24 202 193 91 57 chr11 3077433 3077521 -145705951 - MIR SINE MIR -78 184 94 543 222 0 128 chr11 3078234 3078468 -145705004 + MER3 DNA MER1_type 1 204 -5 359 323 63 26 chr11 3080352 3080541 -145702931 - L3 LINE CR1 -59 1518 1323 2043 189 27 5 chr11 3080966 3081341 -145702131 + MLT1B LTR MaLR 3 385 -5 2717 182 107 23 chr11 3081344 3081860 -145701612 + MLT1B-int LTR MaLR 5 678 -693 2186 157 18 32 chr11 3081860 3082294 -145701178 + L1MA5 LINE L1 5868 6295 -5 2717 182 107 23 chr11 3082294 3082465 -145701007 + MLT1B-int LTR MaLR 678 833 -538 1469 212 119 11 chr11 3082755 3083109 -145700363 + MLT1B-int LTR MaLR 978 1369 -2 1746 153 150 23 chr11 3083111 3083457 -145700015 + MLT1B LTR MaLR 1 390 0 674 273 73 78 chr11 3084348 3084706 -145698766 + L2 LINE L2 2433 2790 -524 1256 144 158 78 chr11 3084706 3085053 -145698419 + THE1C LTR MaLR 1 375 0 674 273 73 78 chr11 3085053 3085078 -145698394 + L2 LINE L2 2790 2814 -500 346 306 51 25 chr11 3085306 3085502 -145697970 + L1MEc LINE L1 1620 1820 -4576 194 313 50 0 chr11 3087286 3087366 -145696106 - L2 LINE L2 -679 2635 2552 584 297 71 53 chr11 3088402 3088813 -145694659 - L2 LINE L2 -635 2679 2262 2086 301 154 32 chr11 3088915 3089006 -145694466 + L2 LINE L2 1601 1680 -1634 372 22 0 0 chr11 3089006 3089051 -145694421 + (CA)n Simple_repeat Simple_repeat 2 46 0 2086 301 154 32 chr11 3089051 3090186 -145693286 + L2 LINE L2 1680 2977 -337 308 336 107 24 chr11 3091076 3091412 -145692060 - L2 LINE L2 -1240 2074 1711 187 304 83 48 chr11 3091489 3091657 -145691815 - MIR SINE MIR -38 224 51 222 322 33 0 chr11 3091904 3091994 -145691478 - MIR SINE MIR -18 244 152 30 69 0 0 chr11 3091994 3092052 -145691420 + AT_rich Low_complexity Low_complexity 1 58 0 506 246 222 0 chr11 3092380 3092551 -145690921 + MER3 DNA MER1_type 1 209 0 1719 164 134 3 chr11 3094845 3094937 -145688535 + MER7A DNA MER2_type 3 82 -2956 776 98 98 8 chr11 3094937 3095060 -145688412 - L1PA13 LINE L1 -5 6158 6025 1719 164 134 3 chr11 3095060 3095272 -145688200 + MER7A DNA MER2_type 82 345 -1 338 264 74 31 chr11 3095291 3095454 -145688018 + MLT1I LTR MaLR 1 170 -239 4118 148 26 6 chr11 3095454 3096117 -145687355 + L1PA13 LINE L1 5482 6157 -6 767 119 0 9 chr11 3096210 3096319 -145687153 + L1PA13 LINE L1 5777 5884 -279 235 257 14 57 chr11 3096319 3096389 -145687083 + MLT1I LTR MaLR 177 243 -166 21 36 0 0 chr11 3096453 3096481 -145686991 + AT_rich Low_complexity Low_complexity 1 28 0 392 237 44 51 chr11 3096577 3096705 -145686767 + MLT1I LTR MaLR 278 439 -11 6939 117 26 16 chr11 3096923 3097920 -145685552 - LTR13 LTR ERVK 0 1007 1 10469 230 16 11 chr11 3097920 3100213 -145683259 - HERVK13 LTR ERVK 0 8116 5812 3715 231 126 12 chr11 3100207 3101172 -145682300 - HERVK13 LTR ERVK -2473 5643 4569 * 555 289 6 0 chr11 3101162 3101321 -145682151 - HERVK13 LTR ERVK -3990 4126 3967 * 1150 208 73 118 chr11 3101326 3101943 -145681529 - HERVK13 LTR ERVK -6814 1302 714 926 119 15 0 chr11 3101956 3102090 -145681382 - HERVK13 LTR ERVK -7907 209 74 906 179 0 6 chr11 3102318 3102480 -145680992 - L1P LINE L1 -1132 5014 4854 2223 162 65 25 chr11 3102487 3102931 -145680541 - L1MA8 LINE L1 -345 6967 6506 * 8671 220 112 28 chr11 3102908 3103128 -145680344 - L1MA8 LINE L1 -1431 5736 5536 2230 78 7 46 chr11 3103128 3103434 -145680038 - AluY SINE Alu -17 294 1 8671 220 112 28 chr11 3103434 3103920 -145679552 - L1MA8 LINE L1 -1631 5536 5093 1805 143 7 7 chr11 3103920 3104206 -145679266 - AluJb SINE Alu -15 297 12 8671 220 112 28 chr11 3104206 3107579 -145675893 - L1MA8 LINE L1 -2074 5093 1622 285 185 87 0 chr11 3108586 3108678 -145674794 + Charlie2 DNA MER1_type 2690 2789 -73 2254 198 105 7 chr11 3109719 3110149 -145673323 + MER70A LTR ERVL 1 472 0 1041 140 91 0 chr11 3110468 3110654 -145672818 - L1PA12 LINE L1 -2093 4053 3851 * 5228 151 51 7 chr11 3110651 3111243 -145672229 + L1PA12 LINE L1 4032 4681 -1465 507 175 0 0 chr11 3111243 3111323 -145672149 + MADE1 DNA Mariner 1 80 0 5228 151 51 7 chr11 3111323 3111656 -145671816 + L1PA12 LINE L1 4681 4998 -1148 2014 43 4 0 chr11 3111656 3111875 -145671597 + L1PA5 LINE L1 5919 6149 -5 5981 92 68 2 chr11 3111899 3112981 -145670491 + L1PA12 LINE L1 5020 6164 -4 1191 293 82 25 chr11 3113548 3114105 -145669367 - MLT2F LTR ERVL 0 628 7 217 306 197 0 chr11 3116142 3116325 -145667147 - MIR SINE MIR -30 232 14 946 110 0 0 chr11 3118670 3118797 -145664675 + L1PA14 LINE L1 6023 6149 -12 1767 113 13 0 chr11 3120752 3120991 -145662481 - AluSc SINE Alu -16 293 52 233 277 0 15 chr11 3122049 3122114 -145661358 + MIR SINE MIR 88 151 -111 423 0 0 0 chr11 3122521 3122568 -145660904 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 250 73 15 chr11 3122801 3122869 -145660603 + MIR SINE MIR 123 194 -68 1505 113 50 4 chr11 3124039 3124299 -145659173 - L1PA8A LINE L1 -465 5666 5469 2657 112 32 10 chr11 3124320 3124723 -145658749 - L1PA8 LINE L1 -7 6165 5754 1092 242 125 50 chr11 3124723 3125140 -145658332 + MLT2B1 LTR ERVL 72 519 -1 312 182 91 0 chr11 3126022 3126088 -145657384 + L1MEc LINE L1 2312 2383 -4013 14761 178 103 47 chr11 3126150 3127800 -145655672 + L1MA1 LINE L1 16 1572 -5993 559 153 41 0 chr11 3127800 3127898 -145655574 + AluSg/x SINE Alu 211 312 0 14761 178 103 47 chr11 3127898 3129246 -145654226 + L1MA1 LINE L1 1572 2843 -4722 2495 117 45 17 chr11 3129246 3129598 -145653874 + THE1B LTR MaLR 1 362 -2 14761 178 103 47 chr11 3129598 3129774 -145653698 + L1MA1 LINE L1 2843 3008 -4557 2016 132 10 3 chr11 3129774 3130070 -145653402 + AluSx SINE Alu 1 298 -14 14761 178 103 47 chr11 3130070 3130760 -145652712 + L1MA1 LINE L1 3008 3658 -3907 1786 236 126 37 chr11 3130760 3131269 -145652203 + MLT2B3 LTR ERVL 1 554 0 14761 178 103 47 chr11 3131269 3131575 -145651897 + L1MA1 LINE L1 3658 4517 -3048 1423 129 62 17 chr11 3131544 3131934 -145651538 + L1MA1 LINE L1 6673 7044 -677 * 1843 153 81 36 chr11 3131934 3132293 -145651179 + THE1C LTR MaLR 1 375 0 1423 129 62 17 chr11 3132293 3132848 -145650624 + L1MA1 LINE L1 7044 7721 0 714 251 100 39 chr11 3132855 3133265 -145650207 + L1MEc LINE L1 2380 2814 -3401 256 188 50 38 chr11 3133282 3133362 -145650110 - L1 LINE L1 -2635 3511 3431 2088 263 91 12 chr11 3133368 3134189 -145649283 - L1P LINE L1 -2762 3384 2499 949 201 51 55 chr11 3134195 3134252 -145649220 + L1MA9 LINE L1 5512 5568 -744 1305 179 236 23 chr11 3134252 3134603 -145648869 - MSTA LTR MaLR -2 426 1 949 201 51 55 chr11 3134603 3134819 -145648653 + L1MA9 LINE L1 5568 5784 -528 949 228 166 13 chr11 3134823 3135209 -145648263 + L1MA9 LINE L1 5825 6269 -43 36372 93 21 17 chr11 3135295 3138569 -145644903 + L1PA6 LINE L1 2 3315 -2839 2392 90 0 3 chr11 3138569 3138880 -145644592 + AluY SINE Alu 2 311 0 36372 93 21 17 chr11 3138880 3141728 -145641744 + L1PA6 LINE L1 3315 6150 -4 239 325 136 31 chr11 3141884 3142075 -145641397 - L2 LINE L2 -2728 586 376 205 337 51 10 chr11 3142229 3142327 -145641145 + MIR SINE MIR 66 167 -95 828 191 82 0 chr11 3142328 3142475 -145640997 + FRAM SINE Alu 1 151 -25 2792 157 29 15 chr11 3142529 3143008 -145640464 + L1PB2 LINE L1 5663 6148 -3 289 300 20 30 chr11 3144546 3144646 -145638826 - MIR SINE MIR -140 122 24 23 0 0 0 chr11 3145604 3145627 -145637845 + AT_rich Low_complexity Low_complexity 1 23 0 182 376 116 29 chr11 3145640 3145986 -145637486 - L2 LINE L2 -41 3231 2856 692 266 71 38 chr11 3147101 3147531 -145635941 - LTR33 LTR ERVL -40 481 10 386 287 64 44 chr11 3150935 3151157 -145632315 - MIR SINE MIR -15 247 15 534 299 117 28 chr11 3152150 3152508 -145630964 + LTR16B LTR ERVL 15 404 -60 7513 28 14 29 chr11 3152545 3153903 -145629569 - L1PA4 LINE L1 -3 6152 4789 257 339 112 13 chr11 3153927 3154160 -145629312 + HERV16 LTR ERVL 313 568 -4428 305 252 73 24 chr11 3154259 3154382 -145629090 + HERV16 LTR ERVL 719 847 -4149 1906 140 107 6 chr11 3154414 3154742 -145628730 + LTR1B LTR ERV1 44 404 -422 1023 224 38 0 chr11 3154739 3154949 -145628523 + LTR1B LTR ERV1 599 816 -10 * 2460 216 67 34 chr11 3154951 3155507 -145627965 + HUERS-P2 LTR ERV1 2 575 -2513 * 13333 146 55 49 chr11 3155504 3157878 -145625594 + HUERS-P2 LTR ERV1 701 3088 0 4476 152 58 14 chr11 3157878 3158661 -145624811 + LTR1B LTR ERV1 1 817 -9 334 364 94 19 chr11 3158840 3159148 -145624324 + HERV16 LTR ERVL 1246 1576 -3420 396 303 98 0 chr11 3159319 3159451 -145624021 + HERV16 LTR ERVL 1854 1998 -2998 1294 319 91 20 chr11 3159680 3160715 -145622757 + HERV16 LTR ERVL 2543 3654 -2000 503 349 53 11 chr11 3160734 3161015 -145622457 + HERV16 LTR ERVL 3400 3692 -1304 692 319 85 54 chr11 3161033 3161864 -145621608 + HERV16 LTR ERVL 4017 4906 -612 348 283 87 91 chr11 3161919 3162413 -145621059 + HERV16 LTR ERVL 4505 4996 0 739 307 101 4 chr11 3162413 3162690 -145620782 + LTR16B LTR ERVL 1 304 -160 27312 126 40 61 chr11 3162988 3169305 -145614167 + L1PA8 LINE L1 1 6169 -3 412 195 62 70 chr11 3170076 3170204 -145613268 + MER34B LTR ERV1 5 131 -434 370 177 177 10 chr11 3170437 3170533 -145612939 + MER34B LTR ERV1 450 561 -4 1815 120 106 0 chr11 3171305 3171580 -145611892 - AluSp SINE Alu -9 304 1 3380 137 131 17 chr11 3171955 3172648 -145610824 - MER4E LTR ERV1 -7 772 1 1205 128 11 6 chr11 3172822 3173002 -145610470 + LTR1B LTR ERV1 1 181 -645 2762 120 84 50 chr11 3173357 3173882 -145609590 + LTR1B LTR ERV1 282 824 -2 1029 276 138 58 chr11 3174622 3175353 -145608119 + HERV16 LTR ERVL 1841 2630 -2366 338 215 25 13 chr11 3175390 3175469 -145608003 + MER3 DNA MER1_type 29 108 -101 1162 244 95 15 chr11 3176337 3176738 -145606734 - L1 LINE L1 -3389 2757 2325 586 217 151 7 chr11 3176905 3177057 -145606415 + MLT1A1 LTR MaLR 1 174 -191 713 162 184 11 chr11 3177614 3177793 -145605679 - L1PB4 LINE L1 -4 6152 5943 1003 159 19 0 chr11 3178323 3178480 -145604992 - AluSp SINE Alu -17 296 137 2165 117 7 3 chr11 3178480 3178779 -145604693 - AluSc SINE Alu -9 300 1 220 216 0 0 chr11 3179339 3179390 -145604082 + A-rich Low_complexity Low_complexity 1 51 0 1834 131 3 11 chr11 3179391 3179673 -145603799 - AluSp SINE Alu -33 280 1 847 329 54 19 chr11 3180840 3181250 -145602222 - LTR16A LTR ERVL 0 450 27 3557 147 65 7 chr11 3181321 3181901 -145601571 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr11 3182638 3182664 -145600808 + (CA)n Simple_repeat Simple_repeat 1 26 0 362 312 24 0 chr11 3183266 3183391 -145600081 - MLT1F1 LTR MaLR -372 195 68 218 322 91 16 chr11 3185128 3185249 -145598223 + MIR SINE MIR 105 234 -28 22 0 0 0 chr11 3186269 3186291 -145597181 + AT_rich Low_complexity Low_complexity 1 22 0 2023 131 23 7 chr11 3186291 3186597 -145596875 - AluSx SINE Alu -1 311 1 278 225 45 81 chr11 3186764 3186875 -145596597 + L1ME3 LINE L1 6048 6154 -8 259 182 45 34 chr11 3187033 3187121 -145596351 + L1M4 LINE L1 3174 3262 -2884 581 326 38 4 chr11 3188826 3189065 -145594407 - MIR SINE MIR -14 248 2 294 310 39 26 chr11 3192694 3192849 -145590623 + MIR SINE MIR 105 261 -1 240 277 0 96 chr11 3193974 3194068 -145589404 + L1ME3 LINE L1 6046 6130 -32 612 304 78 4 chr11 3196030 3196260 -145587212 - MIR SINE MIR -14 248 2 22 35 0 0 chr11 3197208 3197237 -145586235 + AT_rich Low_complexity Low_complexity 1 29 0 3766 34 0 2 chr11 3199846 3200290 -145583182 + L1PA4 LINE L1 5713 6155 0 233 297 47 0 chr11 3201921 3201985 -145581487 - L2 LINE L2 -51 3221 3155 2357 78 0 3 chr11 3203078 3203373 -145580099 + AluY SINE Alu 1 294 -17 215 330 106 11 chr11 3206913 3207007 -145576465 - MIR SINE MIR -75 133 31 534 204 10 19 chr11 3207540 3207643 -145575829 + MER5A DNA MER1_type 9 110 -79 470 287 139 3 chr11 3207804 3208001 -145575471 - MIR SINE MIR -27 235 15 192 238 71 0 chr11 3208478 3208520 -145574952 + MIR SINE MIR 105 149 -59 367 259 89 30 chr11 3210255 3210390 -145573082 + L2 LINE L2 3129 3271 -1 505 203 62 23 chr11 3210468 3210596 -145572876 - MIR SINE MIR 0 262 130 396 204 29 48 chr11 3211075 3211178 -145572294 + L2 LINE L2 3169 3269 -44 320 244 150 33 chr11 3211406 3211619 -145571853 + HAL1 LINE L1 2270 2507 0 261 0 0 0 chr11 3212578 3212607 -145570865 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 228 349 66 9 chr11 3213204 3213310 -145570162 - L2 LINE L2 -15 3257 3146 252 0 0 0 chr11 3214620 3214648 -145568824 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr11 3214953 3214977 -145568495 + AT_rich Low_complexity Low_complexity 1 24 0 231 227 34 11 chr11 3215113 3215201 -145568271 + T-rich Low_complexity Low_complexity 5 94 0 342 337 59 19 chr11 3215676 3216030 -145567442 - LTR67 LTR ERVL -19 538 137 456 323 45 45 chr11 3216157 3216423 -145567049 + MLT1I LTR MaLR 98 363 -46 275 297 42 34 chr11 3216458 3216576 -145566896 - LTR67 LTR ERVL -437 120 2 1076 48 0 0 chr11 3216867 3216993 -145566479 + L1PA4 LINE L1 6027 6152 -3 22 35 0 0 chr11 3216993 3217022 -145566450 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 3217069 3217090 -145566382 + AT_rich Low_complexity Low_complexity 1 21 0 1362 203 22 120 chr11 3217287 3217687 -145565785 - MLT1A1 LTR MaLR 0 365 5 195 375 71 5 chr11 3219302 3219486 -145563986 - L2 LINE L2 -1647 1667 1472 746 284 50 0 chr11 3219620 3219821 -145563651 + LTR16C LTR ERVL 150 360 -131 346 277 134 9 chr11 3219814 3219926 -145563546 + LTR16C LTR ERVL 237 362 -129 * 816 74 0 40 chr11 3219927 3220076 -145563396 + (TCCCC)n Simple_repeat Simple_repeat 3 145 0 14453 104 40 17 chr11 3220178 3222473 -145560999 - L1P LINE L1 -1882 4264 1917 5613 111 15 1 chr11 3222475 3223686 -145559786 + L1PA11 LINE L1 4801 6024 -150 303 190 0 147 chr11 3223689 3223805 -145559667 - LTR57-int LTR ERVL -4211 1132 1034 * 309 187 0 138 chr11 3223706 3223829 -145559643 - MER4-int LTR ERV1 -7021 1099 994 * 506 203 25 131 chr11 3223819 3224055 -145559417 - MER4-int LTR ERV1 -4554 2044 1834 876 236 69 29 chr11 3224055 3224301 -145559171 - MER34C LTR ERV1 -172 413 158 539 231 7 21 chr11 3224301 3224444 -145559028 - MER4-int LTR ERV1 -4132 991 851 2178 164 36 68 chr11 3224561 3225062 -145558410 - MER4-int LTR ERV1 -6705 832 348 2687 127 65 59 chr11 3225068 3225617 -145557855 + LTR9 LTR ERV1 1 766 -28 895 186 5 69 chr11 3225617 3225805 -145557667 + HUERS-P3b LTR ERV1 358 533 -6885 3116 161 63 14 chr11 3225839 3226409 -145557063 + HUERS-P3b LTR ERV1 742 1339 -7580 * 3594 121 0 4 chr11 3226401 3226896 -145556576 + HUERS-P3b LTR ERV1 1532 2024 -5394 1410 48 0 0 chr11 3226893 3227059 -145556413 + HUERS-P3b LTR ERV1 2477 2642 -4776 * 1612 155 49 0 chr11 3227059 3227323 -145556149 - LTR8 LTR ERV1 -250 441 165 376 272 24 0 chr11 3227445 3227570 -145555902 + LTR16C LTR ERVL 364 491 0 270 0 0 0 chr11 3227663 3227693 -145555779 + (T)n Simple_repeat Simple_repeat 1 30 0 2440 130 107 18 chr11 3228203 3228594 -145554878 - MSTA LTR MaLR -2 426 1 366 241 28 35 chr11 3228632 3228773 -145554699 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 200 244 73 49 chr11 3228895 3228977 -145554495 + MIR SINE MIR 95 178 -84 291 304 13 0 chr11 3229188 3229267 -145554205 + L2 LINE L2 3187 3266 -6 1493 109 100 9 chr11 3230302 3230531 -145552941 + L1PB1 LINE L1 5900 6149 -2 801 168 35 0 chr11 3230681 3230824 -145552648 + MER57A LTR ERV1 1 148 -255 9366 24 0 0 chr11 3231179 3232260 -145551212 - L1P LINE L1 -867 5279 4199 3557 21 2 0 chr11 3232255 3232826 -145550646 + L1PA2 LINE L1 5406 6155 0 * 1218 202 32 4 chr11 3233071 3233318 -145550154 + MER57A LTR ERV1 150 403 0 1384 262 17 26 chr11 3233318 3233665 -145549807 + MER57A-int LTR ERV1 1 344 -7193 1114 157 6 0 chr11 3233666 3233838 -145549634 - LTR9 LTR ERV1 0 612 440 9908 104 24 11 chr11 3233860 3234650 -145548822 - HUERS-P3b LTR ERV1 -1733 5685 4867 2130 130 3 10 chr11 3234650 3234957 -145548515 - AluSx SINE Alu -7 305 1 9908 104 24 11 chr11 3234957 3235648 -145547824 - HUERS-P3b LTR ERV1 -2551 4867 4186 3318 78 32 34 chr11 3235646 3236118 -145547354 - HUERS-P3b LTR ERV1 -3875 3543 3073 * 2534 177 30 2 chr11 3236118 3236547 -145546925 + LTR8 LTR ERV1 1 441 -250 1410 48 0 0 chr11 3236547 3236713 -145546759 - HUERS-P3b LTR ERV1 -4776 2642 2477 * 3594 121 0 4 chr11 3236710 3237205 -145546267 - HUERS-P3b LTR ERV1 -5394 2024 1532 3116 161 63 14 chr11 3237197 3237767 -145545705 - HUERS-P3b LTR ERV1 -7580 1339 742 * 895 186 5 69 chr11 3237801 3237989 -145545483 - HUERS-P3b LTR ERV1 -6885 533 358 2687 127 65 59 chr11 3237989 3238538 -145544934 - LTR9 LTR ERV1 -28 766 1 2178 164 36 68 chr11 3238544 3239045 -145544427 + LOR1-int LTR ERV1 348 832 -6705 514 225 14 21 chr11 3239162 3239304 -145544168 + LOR1-int LTR ERV1 851 991 -4132 876 236 69 29 chr11 3239304 3239550 -145543922 + MER34C LTR ERV1 158 413 -172 506 203 25 131 chr11 3239550 3239786 -145543686 + LOR1-int LTR ERV1 1834 2044 -4554 309 187 0 138 chr11 3239776 3239899 -145543573 + LOR1-int LTR ERV1 994 1099 -7021 * 303 190 0 147 chr11 3239800 3239916 -145543556 + LTR57-int LTR ERVL 1034 1132 -4211 * 5613 111 15 1 chr11 3239919 3241130 -145542342 - L1PA11 LINE L1 -150 6024 4801 5844 92 18 23 chr11 3241132 3241988 -145541484 + L1P LINE L1 1917 2767 -3379 3128 94 0 9 chr11 3241989 3242413 -145541059 + L1P LINE L1 3823 4242 -1904 225 0 0 0 chr11 3242450 3242475 -145540997 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 216 97 0 0 chr11 3242508 3242539 -145540933 + (A)n Simple_repeat Simple_repeat 1 31 0 8626 95 17 0 chr11 3242547 3244466 -145539006 + L1PA8 LINE L1 4233 6168 -4 526 200 20 10 chr11 3244466 3244559 -145538913 - L1MC/D LINE L1 -654 5657 5561 565 238 8 8 chr11 3244705 3244827 -145538645 + L2 LINE L2 3191 3312 -1 1608 274 89 21 chr11 3244833 3245724 -145537748 - L1MC/D LINE L1 -1052 5163 4213 24 0 0 0 chr11 3246411 3246435 -145537037 + AT_rich Low_complexity Low_complexity 1 24 0 470 348 41 88 chr11 3246764 3247526 -145535946 - L2 LINE L2 -340 2974 2249 257 306 184 10 chr11 3247730 3248018 -145535454 + L2 LINE L2 1732 2069 -1245 228 163 0 0 chr11 3249120 3249163 -145534309 + (TG)n Simple_repeat Simple_repeat 2 44 0 2054 130 0 3 chr11 3250119 3250426 -145533046 - AluSg SINE Alu -3 307 2 183 333 111 26 chr11 3250440 3250557 -145532915 - MER5B DNA MER1_type -45 133 7 1530 92 0 0 chr11 3253719 3253914 -145529558 + AluSc SINE Alu 106 300 -9 318 265 39 10 chr11 3253980 3254082 -145529390 - L1MC/D LINE L1 -6135 261 157 248 310 28 14 chr11 3255678 3255820 -145527652 + (CTGGGG)n Simple_repeat Simple_repeat 3 146 0 547 298 104 26 chr11 3256065 3256581 -145526891 + L2 LINE L2 2684 3252 -61 209 133 0 0 chr11 3256696 3256726 -145526746 + L2 LINE L2 3019 3048 -265 228 260 52 0 chr11 3257842 3257919 -145525553 + MIR SINE MIR 118 198 -64 375 348 51 6 chr11 3258188 3258346 -145525126 + MIR SINE MIR 20 184 -78 240 345 73 18 chr11 3260750 3260915 -145522557 - L2 LINE L2 -375 2939 2766 763 275 37 20 chr11 3261125 3261369 -145522103 - MIR SINE MIR -13 249 2 1408 150 18 4 chr11 3262113 3262340 -145521132 + MER46A DNA MER2_type 1 230 -6 1592 235 28 43 chr11 3262596 3263056 -145520416 - LTR16A1 LTR ERVL -2 455 3 293 279 0 106 chr11 3265387 3265548 -145517924 - MIR SINE MIR -41 221 78 273 286 61 68 chr11 3265773 3265920 -145517552 - MER5B DNA MER1_type -30 148 3 202 255 28 166 chr11 3266315 3266460 -145517012 + L2 LINE L2 3123 3247 -25 667 287 135 45 chr11 3266465 3266820 -145516652 + MLT1J1 LTR MaLR 8 394 -52 964 348 91 55 chr11 3267109 3267747 -145515725 + L2 LINE L2 1556 2170 -1143 348 24 0 0 chr11 3267747 3267788 -145515684 + (CA)n Simple_repeat Simple_repeat 1 41 0 964 348 91 55 chr11 3267788 3268611 -145514861 + L2 LINE L2 2170 3062 -251 2175 117 0 3 chr11 3268656 3268964 -145514508 - AluSx SINE Alu -5 307 1 1675 246 96 25 chr11 3269017 3269589 -145513883 + MLT1E2 LTR MaLR 11 623 -3 213 329 13 40 chr11 3269637 3269713 -145513759 - L2 LINE L2 -58 3255 3182 494 213 89 78 chr11 3270083 3270507 -145512965 - LTR4 LTR ERV1 0 596 112 198 286 63 0 chr11 3271080 3271143 -145512329 - L2 LINE L2 -9 3263 3197 223 314 95 0 chr11 3271475 3271580 -145511892 + L2 LINE L2 2770 2884 -430 801 171 35 6 chr11 3273427 3273597 -145509875 - L1MA8 LINE L1 -2 6289 6115 198 0 0 0 chr11 3273599 3273621 -145509851 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 228 182 0 0 chr11 3273627 3273671 -145509801 + CT-rich Low_complexity Low_complexity 2 45 0 1791 174 0 28 chr11 3273681 3274002 -145509470 - AluJo SINE Alu 0 312 1 184 250 16 31 chr11 3274230 3274294 -145509178 - MIR SINE MIR -40 222 160 2123 122 6 10 chr11 3274407 3274719 -145508753 + AluSp SINE Alu 1 311 -2 426 20 0 0 chr11 3274753 3274804 -145508668 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 30 0 0 chr11 3275504 3275537 -145507935 + AT_rich Low_complexity Low_complexity 1 33 0 4923 148 52 9 chr11 3278289 3278688 -145504784 + L1MA9 LINE L1 5370 5751 -561 375 78 0 0 chr11 3278688 3278739 -145504733 + (CA)n Simple_repeat Simple_repeat 1 51 0 4923 148 52 9 chr11 3278739 3279188 -145504284 + L1MA9 LINE L1 5751 6254 -58 1392 165 0 0 chr11 3279190 3279414 -145504058 + L1PA16 LINE L1 5943 6166 0 421 171 0 0 chr11 3279416 3279492 -145503980 + L1MA9 LINE L1 6237 6312 0 894 205 72 0 chr11 3279501 3279696 -145503776 - L1MD1 LINE L1 -112 6524 6316 567 233 7 7 chr11 3279689 3279839 -145503633 - L1MD1 LINE L1 -873 5667 5518 * 3406 252 99 20 chr11 3279868 3280358 -145503114 - L1MD1 LINE L1 -1873 4667 4217 3507 153 53 14 chr11 3280358 3280394 -145503078 - L1MB2 LINE L1 -16 6155 6122 2391 86 7 3 chr11 3280394 3280698 -145502774 - AluSg SINE Alu -5 305 1 3507 153 53 14 chr11 3280698 3281288 -145502184 - L1MB2 LINE L1 -49 6122 5505 3406 252 99 20 chr11 3281288 3282205 -145501267 - L1MD1 LINE L1 -2323 4217 3149 2735 189 48 93 chr11 3282294 3283061 -145500411 - L1MD1 LINE L1 -5807 733 1 186 298 18 0 chr11 3283656 3283713 -145499759 + L2 LINE L2 3002 3059 -254 564 142 16 8 chr11 3284770 3284897 -145498575 + GA-rich Low_complexity Low_complexity 1 128 0 335 353 33 7 chr11 3285056 3285206 -145498266 - MIR SINE MIR 0 262 109 255 287 110 55 chr11 3285524 3285688 -145497784 - MIR3 SINE MIR -16 192 20 1192 174 0 94 chr11 3285815 3286103 -145497369 + L1MA10 LINE L1 6074 6334 0 264 260 144 33 chr11 3286453 3286586 -145496886 + MIR SINE MIR 18 168 -94 2379 75 0 28 chr11 3286586 3286904 -145496568 - AluSc SINE Alu 0 309 1 264 260 144 33 chr11 3286904 3286934 -145496538 + MIR SINE MIR 168 193 -69 489 302 53 11 chr11 3287324 3287513 -145495959 + LTR16C LTR ERVL 291 487 -4 2435 37 37 3 chr11 3287570 3287866 -145495606 + AluY SINE Alu 1 306 -5 293 246 84 53 chr11 3287897 3288077 -145495395 - LTR65 LTR ERV1 -6 663 292 2064 103 0 4 chr11 3288199 3288471 -145495001 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr11 3288491 3288513 -145494959 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1720 203 28 52 chr11 3288687 3288727 -145494745 - MLT2D LTR ERVL 0 414 375 225 108 0 0 chr11 3288727 3288764 -145494708 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1720 203 28 52 chr11 3288764 3289147 -145494325 - MLT2D LTR ERVL -39 375 1 569 167 11 0 chr11 3289613 3289703 -145493769 - AluJ/FLAM SINE Alu -220 92 2 289 134 176 17 chr11 3289705 3289824 -145493648 - Charlie5 DNA MER1_type -49 2563 2426 3170 119 33 6 chr11 3289828 3290317 -145493155 - L1MB4 LINE L1 -1 6179 5678 2109 132 3 3 chr11 3290323 3290627 -145492845 - AluSx SINE Alu -8 304 1 217 278 69 0 chr11 3291399 3291471 -145492001 + L3 LINE CR1 1500 1576 -1 27 0 0 0 chr11 3291502 3291529 -145491943 + AT_rich Low_complexity Low_complexity 1 27 0 373 337 85 24 chr11 3291849 3292095 -145491377 + MIR SINE MIR 2 262 0 899 194 0 0 chr11 3292220 3292364 -145491108 - FRAM SINE Alu -27 149 6 2234 99 0 7 chr11 3292401 3292695 -145490777 + AluSc SINE Alu 1 292 -17 197 333 108 17 chr11 3294527 3294647 -145488825 - L2 LINE L2 -197 3075 2945 239 307 86 64 chr11 3296897 3297037 -145486435 - MIR SINE MIR -83 179 37 345 272 53 26 chr11 3297392 3297506 -145485966 - L2 LINE L2 0 3272 3156 205 269 87 91 chr11 3298937 3299179 -145484293 - L2 LINE L2 -1 3271 3031 2038 295 83 39 chr11 3299377 3300536 -145482936 - L2 LINE L2 -33 3280 2071 22 0 0 0 chr11 3301228 3301250 -145482222 + AT_rich Low_complexity Low_complexity 1 22 0 192 200 44 0 chr11 3301291 3301426 -145482046 + (TA)n Simple_repeat Simple_repeat 1 141 0 563 255 111 51 chr11 3301435 3301670 -145481802 + MIR SINE MIR 2 250 -12 271 344 8 16 chr11 3301861 3301983 -145481489 + MIR3 SINE MIR 87 207 -1 1160 136 35 0 chr11 3304384 3304583 -145478889 + L1MA6 LINE L1 6093 6298 -2 2478 65 0 3 chr11 3304771 3305078 -145478394 + AluY SINE Alu 1 306 -5 303 299 23 0 chr11 3305820 3305907 -145477565 + L1MC4 LINE L1 6615 6703 -1339 225 0 0 0 chr11 3305907 3305932 -145477540 + (CA)n Simple_repeat Simple_repeat 2 26 0 252 347 89 45 chr11 3306916 3307296 -145476176 + L2 LINE L2 1845 2241 -1073 207 240 0 20 chr11 3308219 3308269 -145475203 + MIR SINE MIR 42 90 -172 485 342 27 46 chr11 3308302 3308565 -145474907 - MIR SINE MIR -3 259 2 251 224 0 0 chr11 3308572 3308621 -145474851 + MIR SINE MIR 96 144 -118 193 282 0 64 chr11 3308843 3308921 -145474551 - L3b LINE CR1 -143 1440 1368 841 154 0 34 chr11 3309309 3309484 -145473988 - L1MB8 LINE L1 -3 6175 6007 636 335 33 5 chr11 3310256 3310471 -145473001 + L2 LINE L2 2451 2671 -643 1792 191 82 14 chr11 3310603 3311017 -145472455 + MLT1D LTR MaLR 1 442 -63 244 286 26 13 chr11 3311077 3311154 -145472318 - MIR SINE MIR -150 112 35 322 292 131 13 chr11 3312043 3312279 -145471193 + L1ME LINE L1 5561 5824 -297 964 200 117 38 chr11 3312511 3312857 -145470615 + MSTC LTR MaLR 1 428 0 271 411 6 13 chr11 3313167 3313325 -145470147 - L2 LINE L2 0 3272 3116 268 270 135 0 chr11 3313379 3313453 -145470019 + MER5A DNA MER1_type 26 109 -80 34 24 0 0 chr11 3313851 3313892 -145469580 + AT_rich Low_complexity Low_complexity 1 41 0 204 347 0 11 chr11 3313952 3314047 -145469425 - L2 LINE L2 -319 2953 2860 202 209 30 15 chr11 3314258 3314325 -145469147 + (TAA)n Simple_repeat Simple_repeat 2 69 0 308 291 163 20 chr11 3314339 3314535 -145468937 - MIR SINE MIR -2 260 37 252 366 27 9 chr11 3316636 3316748 -145466724 + MIR SINE MIR 22 135 -73 1724 100 58 4 chr11 3317039 3317279 -145466193 + AluSc SINE Alu 1 253 -56 180 0 0 0 chr11 3317304 3317324 -145466148 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1839 134 3 58 chr11 3317626 3317939 -145465533 + AluJb SINE Alu 17 312 0 2277 174 76 8 chr11 3317954 3318789 -145464683 - L1MB1 LINE L1 -13 6155 5226 191 380 28 28 chr11 3319212 3319354 -145464118 + L2 LINE L2 2031 2172 -1142 793 291 14 9 chr11 3420189 3420677 -145362795 - L1MC/D LINE L1 -769 5590 5101 33 25 0 0 chr11 3425572 3425612 -145357860 + AT_rich Low_complexity Low_complexity 1 40 0 265 106 21 21 chr11 3428503 3428550 -145354922 + AluSp SINE Alu 136 182 -121 241 284 34 0 chr11 3429177 3429265 -145354207 - L1MA5 LINE L1 -369 5931 5841 414 0 0 0 chr11 3429709 3429755 -145353717 + (GGA)n Simple_repeat Simple_repeat 3 48 0 312 27 0 0 chr11 3430902 3430939 -145352533 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 265 106 21 21 chr11 3431681 3431728 -145351744 - AluSp SINE Alu -121 182 136 275 265 8 45 chr11 3432799 3432931 -145350541 + HERVK LTR ERVK 2515 2641 -3275 23 0 0 0 chr11 3432947 3432970 -145350502 + AT_rich Low_complexity Low_complexity 1 23 0 348 265 10 13 chr11 3432992 3433153 -145350319 + HERVK LTR ERVK 2976 3747 -3496 22 35 0 0 chr11 3433442 3433471 -145350001 + AT_rich Low_complexity Low_complexity 1 29 0 4245 275 21 6 chr11 3433587 3435202 -145348270 + L1 LINE L1 2624 4262 -1884 222 37 0 0 chr11 3435607 3435634 -145347838 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 262 231 107 33 chr11 3436254 3436375 -145347097 + FRAM SINE Alu 37 166 0 380 83 33 0 chr11 3436552 3436612 -145346860 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 1363 320 14 15 chr11 3437768 3438958 -145344514 - L1MA5A LINE L1 -366 5931 4743 218 254 0 0 chr11 3439112 3439167 -145344305 + T-rich Low_complexity Low_complexity 4 58 0 6130 267 5 5 chr11 3439832 3442360 -145341112 - L1MA9 LINE L1 -381 5931 3402 204 40 0 0 chr11 3442604 3442629 -145340843 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 282 192 29 29 chr11 3442742 3442846 -145340626 - L1P LINE L1 -2347 3799 3696 524 293 45 28 chr11 3443874 3444345 -145339127 + L1 LINE L1 3108 3586 -2560 225 209 15 0 chr11 3444585 3444652 -145338820 - MLT2A1 LTR ERVL 0 444 377 1419 300 34 60 chr11 3445202 3446427 -145337045 + L1 LINE L1 3856 5048 -1098 342 153 0 0 chr11 3449571 3449630 -145333842 + (TA)n Simple_repeat Simple_repeat 2 60 0 240 221 0 26 chr11 3450786 3450863 -145332609 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 183 80 0 0 chr11 3451092 3451117 -145332355 + (T)n Simple_repeat Simple_repeat 1 25 0 201 39 0 0 chr11 3451946 3451972 -145331500 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 284 204 116 14 chr11 3452947 3453085 -145330387 + AluS SINE Alu 3 95 -208 429 176 65 131 chr11 3453176 3453329 -145330143 + FLAM_C SINE Alu 1 143 0 323 259 95 20 chr11 3458615 3458794 -145324678 + AluSq/x SINE Alu 2 113 -189 22 80 0 0 chr11 3460584 3460634 -145322838 + AT_rich Low_complexity Low_complexity 1 50 0 243 0 0 0 chr11 3461149 3461176 -145322296 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 195 42 0 0 chr11 3461187 3461211 -145322261 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 211 105 11 chr11 3461261 3461356 -145322116 - AluSq/x SINE Alu -197 105 2 21 0 0 0 chr11 3461699 3461720 -145321752 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 3461873 3461914 -145321558 + AT_rich Low_complexity Low_complexity 1 41 0 501 319 51 24 chr11 3462975 3463458 -145320014 - L1M4 LINE L1 -959 5187 4719 336 24 0 0 chr11 3463458 3463499 -145319973 + (TTG)n Simple_repeat Simple_repeat 2 42 0 501 319 51 24 chr11 3463499 3463521 -145319951 - L1M4 LINE L1 -1427 4719 4699 189 0 0 0 chr11 3463521 3463542 -145319930 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 501 319 51 24 chr11 3463542 3463655 -145319817 - L1M4 LINE L1 -1447 4699 4552 286 260 73 57 chr11 3463855 3464032 -145319440 + AluJo SINE Alu 123 302 0 36 23 0 0 chr11 3466069 3466112 -145317360 + AT_rich Low_complexity Low_complexity 1 43 0 679 320 16 16 chr11 3467091 3467531 -145315941 + L1 LINE L1 4882 5321 -825 190 333 0 0 chr11 3467554 3467614 -145315858 + MIR SINE MIR 6 65 -197 28 29 0 0 chr11 3467697 3467732 -145315740 + AT_rich Low_complexity Low_complexity 1 35 0 295 228 109 0 chr11 3467952 3468044 -145315428 + FLAM_C SINE Alu 5 106 -27 1155 114 0 0 chr11 3468083 3468258 -145315214 + (GAGAA)n Simple_repeat Simple_repeat 4 178 0 279 0 0 0 chr11 3468258 3468289 -145315183 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 599 175 8 0 chr11 3468289 3468409 -145315063 + GA-rich Low_complexity Low_complexity 1 121 0 343 216 98 0 chr11 3468793 3468895 -145314577 + FLAM_C SINE Alu 2 113 -20 23 0 0 0 chr11 3470490 3470513 -145312959 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr11 3470939 3470964 -145312508 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 239 120 0 40 chr11 3471779 3471829 -145311643 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 602 174 90 30 chr11 3473753 3473920 -145309552 - FRAM SINE Alu 0 176 1 23 33 0 0 chr11 3476936 3476966 -145306506 + AT_rich Low_complexity Low_complexity 1 30 0 1939 254 25 28 chr11 3477633 3478493 -145304979 - L1MA4 LINE L1 -375 5925 5066 2819 262 10 6 chr11 3478503 3479392 -145304080 + L1 LINE L1 3987 4879 -1267 823 308 42 35 chr11 3480144 3480924 -145302548 - L1M4 LINE L1 -960 5186 4395 405 0 0 0 chr11 3480924 3480969 -145302503 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 823 308 42 35 chr11 3480969 3481163 -145302309 - L1M4 LINE L1 -1751 4395 4204 333 0 0 0 chr11 3481263 3481300 -145302172 + (T)n Simple_repeat Simple_repeat 1 37 0 189 107 0 0 chr11 3481404 3481432 -145302040 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 188 317 0 0 chr11 3481525 3481585 -145301887 - MIR SINE MIR -197 65 6 643 221 14 27 chr11 3481638 3481843 -145301629 - L1MA7 LINE L1 -324 5976 5769 26 30 0 0 chr11 3481843 3481876 -145301596 + AT_rich Low_complexity Low_complexity 1 33 0 240 203 0 17 chr11 3481962 3482021 -145301451 - tRNA-Lys-AAA tRNA tRNA -13 63 6 203 59 0 29 chr11 3483056 3483090 -145300382 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 3483897 3483918 -145299554 + AT_rich Low_complexity Low_complexity 1 21 0 572 80 0 11 chr11 3485237 3485325 -145298147 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 482 178 121 45 chr11 3486595 3486752 -145296720 + FRAM SINE Alu 1 168 -8 225 0 0 0 chr11 3489324 3489349 -145294123 + (A)n Simple_repeat Simple_repeat 1 25 0 212 305 0 0 chr11 3489468 3489550 -145293922 + A-rich Low_complexity Low_complexity 1 82 0 270 116 0 0 chr11 3489665 3489708 -145293764 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 470 210 96 25 chr11 3492669 3492896 -145290576 + FRAM SINE Alu 2 239 0 600 53 0 0 chr11 3492896 3492972 -145290500 + (GGA)n Simple_repeat Simple_repeat 3 78 0 254 284 95 0 chr11 3493974 3494069 -145289403 + FLAM_C SINE Alu 3 106 -27 788 88 7 0 chr11 3494149 3494285 -145289187 + (CA)n Simple_repeat Simple_repeat 2 138 0 27 49 0 0 chr11 3495480 3495521 -145287951 + AT_rich Low_complexity Low_complexity 1 41 0 1125 226 4 0 chr11 3496107 3496373 -145287099 - L1MA7 LINE L1 -523 5657 5391 27 0 0 0 chr11 3496947 3496974 -145286498 + AT_rich Low_complexity Low_complexity 1 27 0 252 131 0 66 chr11 3497498 3497559 -145285913 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 416 184 125 53 chr11 3497710 3497862 -145285610 + FRAM SINE Alu 1 162 -14 296 231 0 0 chr11 3497945 3498010 -145285462 - tRNA-Ala-GCG tRNA tRNA -10 65 1 202 206 15 44 chr11 3498047 3498115 -145285357 + MIR3 SINE MIR 1 66 -142 243 224 0 0 chr11 3498359 3498435 -145285037 + CT-rich Low_complexity Low_complexity 2 77 0 207 0 0 0 chr11 3500277 3500300 -145283172 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 552 249 10 24 chr11 3501301 3501510 -145281962 + L1 LINE L1 2155 2360 -3786 431 216 111 58 chr11 3503403 3503574 -145279898 + AluJo SINE Alu 120 299 -13 215 214 0 0 chr11 3504789 3504831 -145278641 + GA-rich Low_complexity Low_complexity 3 44 0 769 277 49 33 chr11 3506631 3507130 -145276342 + HERVK14 LTR ERVK 2666 3648 -2860 323 239 0 23 chr11 3507323 3507411 -145276061 + HERVK14 LTR ERVK 3565 3650 -3767 21 0 0 0 chr11 3507722 3507743 -145275729 + AT_rich Low_complexity Low_complexity 1 21 0 250 296 15 15 chr11 3507857 3507989 -145275483 + HERVK14 LTR ERVK 4655 4786 -3330 239 311 0 0 chr11 3508388 3508462 -145275010 + L1 LINE L1 4072 4145 -2001 21 0 0 0 chr11 3509262 3509283 -145274189 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr11 3510762 3510794 -145272678 + (T)n Simple_repeat Simple_repeat 1 32 0 185 327 55 45 chr11 3512468 3512578 -145270894 - L2 LINE L2 -6 3266 3156 556 175 150 12 chr11 3514989 3515149 -145268323 - AluJo SINE Alu -10 302 121 225 154 0 0 chr11 3515667 3515706 -145267766 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 208 0 26 chr11 3517236 3517313 -145266159 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 560 129 10 0 chr11 3517975 3518076 -145265396 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2068 115 3 10 chr11 3518585 3518873 -145264599 - AluSx SINE Alu -26 286 1 33 25 0 0 chr11 3518986 3519026 -145264446 + AT_rich Low_complexity Low_complexity 1 40 0 194 309 0 29 chr11 3519052 3519120 -145264352 - MIR3 SINE MIR -142 66 1 639 39 0 0 chr11 3519484 3519562 -145263910 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 8935 274 12 11 chr11 3520975 3525545 -145257927 + L1MA9 LINE L1 1991 6647 -381 231 308 0 0 chr11 3527861 3527926 -145255546 + C-rich Low_complexity Low_complexity 4 68 0 946 274 22 37 chr11 3528078 3528483 -145254989 - L1PA8 LINE L1 -296 5876 5478 832 250 142 36 chr11 3528129 3528545 -145254927 - L1ME3 LINE L1 -337 5825 5366 * 428 127 60 217 chr11 3528779 3528965 -145254507 + FLAM_C SINE Alu 3 162 0 569 144 117 64 chr11 3531562 3531750 -145251722 + AluJo SINE Alu 115 312 0 24 32 0 0 chr11 3532812 3532843 -145250629 + AT_rich Low_complexity Low_complexity 1 31 0 500 139 146 49 chr11 3533556 3533700 -145249772 + FRAM SINE Alu 1 157 -19 23 33 0 0 chr11 3534239 3534269 -145249203 + AT_rich Low_complexity Low_complexity 1 30 0 1178 34 7 0 chr11 3536603 3536750 -145246722 + (GAAAA)n Simple_repeat Simple_repeat 2 149 0 297 0 0 0 chr11 3536889 3536922 -145246550 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 348 24 0 0 chr11 3537183 3537224 -145246248 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 276 30 0 0 chr11 3537240 3537273 -145246199 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 409 179 105 11 chr11 3537320 3537415 -145246057 - AluSq/x SINE Alu -207 105 2 405 310 36 70 chr11 3539768 3540184 -145243288 + L1M2 LINE L1 1818 2219 -4630 372 203 14 142 chr11 3540480 3540628 -145242844 + FLAM_C SINE Alu 2 130 -3 21 36 0 0 chr11 3540628 3540656 -145242816 + AT_rich Low_complexity Low_complexity 1 28 0 2139 281 14 10 chr11 3542961 3543996 -145239476 - L1MA4 LINE L1 -370 5930 4892 7413 280 11 13 chr11 3544254 3547726 -145235746 - L1MA4 LINE L1 -1241 4905 1432 450 153 127 60 chr11 3548645 3548823 -145234649 - AluJo SINE Alu 0 320 130 183 42 0 0 chr11 3548823 3548847 -145234625 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 513 242 81 6 chr11 3550123 3550284 -145233188 - FRAM SINE Alu -3 173 1 25 31 0 0 chr11 3554177 3554209 -145229263 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr11 3554370 3554392 -145229080 + (T)n Simple_repeat Simple_repeat 1 22 0 362 197 101 30 chr11 3554394 3554552 -145228920 - AluSq/x SINE Alu -197 105 2 449 181 85 0 chr11 3556058 3556152 -145227320 - AluSg SINE Alu -207 103 2 26 64 0 0 chr11 3556668 3556715 -145226757 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr11 3558219 3558255 -145225217 + AT_rich Low_complexity Low_complexity 1 36 0 316 194 65 93 chr11 3560600 3560739 -145222733 - AluSp SINE Alu -168 135 1 197 160 0 40 chr11 3564767 3564817 -145218655 + (TATG)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr11 3565275 3565303 -145218169 + AT_rich Low_complexity Low_complexity 1 28 0 388 298 8 0 chr11 3566638 3566769 -145216703 + HERVK22 LTR ERVK 3617 3748 -3495 230 274 0 0 chr11 3567055 3567117 -145216355 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 251 250 95 17 chr11 3567122 3567238 -145216234 + FRAM SINE Alu 42 166 0 2167 267 31 20 chr11 3567257 3568317 -145215155 + L1PA16 LINE L1 4861 5930 -236 428 210 115 25 chr11 3570044 3570231 -145213241 + AluJo SINE Alu 118 318 0 25 31 0 0 chr11 3570247 3570279 -145213193 + AT_rich Low_complexity Low_complexity 1 32 0 206 186 23 0 chr11 3570354 3570397 -145213075 + A-rich Low_complexity Low_complexity 6 49 0 657 0 0 0 chr11 3570622 3570695 -145212777 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 307 187 22 22 chr11 3571303 3571394 -145212078 + (TCTG)n Simple_repeat Simple_repeat 1 91 0 251 155 35 35 chr11 3571742 3571800 -145211672 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 250 244 13 64 chr11 3575397 3575475 -145207997 + HERVK22 LTR ERVK 3156 3229 -4887 1018 288 67 54 chr11 3575520 3576436 -145207036 + HERVK22 LTR ERVK 2483 3887 -2548 574 253 84 103 chr11 3577126 3578049 -145205423 + HERVK22 LTR ERVK 4261 4998 -947 207 0 0 0 chr11 3580741 3580764 -145202708 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 103 0 26 chr11 3580774 3580813 -145202659 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 425 204 114 60 chr11 3582452 3582619 -145200853 - FRAM SINE Alu -1 175 1 1281 260 64 23 chr11 3584237 3584672 -145198800 - HERVR LTR ERV1 -2180 5212 4760 521 273 139 85 chr11 3584864 3585781 -145197691 - HERVR LTR ERV1 -3326 5652 3252 259 316 0 0 chr11 3585784 3585863 -145197609 - HERVR LTR ERV1 -3796 3596 3518 269 231 22 55 chr11 3586027 3586118 -145197354 - HERVR LTR ERV1 -5870 1522 1435 437 311 0 0 chr11 3587170 3587347 -145196125 - HERVR LTR ERV1 -6787 605 429 277 123 25 19 chr11 3589017 3589090 -145194382 - MLT2A1 LTR ERVL 0 444 380 380 0 0 98 chr11 3589607 3589668 -145193804 + (T)n Simple_repeat Simple_repeat 1 55 0 770 112 0 8 chr11 3590010 3590135 -145193337 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 415 193 91 0 chr11 3590174 3590262 -145193210 - AluSg SINE Alu -213 97 2 26 0 0 0 chr11 3592734 3592760 -145190712 + AT_rich Low_complexity Low_complexity 1 26 0 186 217 50 50 chr11 3592843 3592903 -145190569 - MIR SINE MIR -197 65 6 249 292 81 19 chr11 3594269 3594430 -145189042 + Tigger1 DNA MER2_type 1960 2130 -288 22 0 0 0 chr11 3596080 3596102 -145187370 + AT_rich Low_complexity Low_complexity 1 22 0 861 120 0 0 chr11 3596116 3596249 -145187223 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1386 184 115 46 chr11 3696763 3697493 -145085979 - L1ME LINE L1 -552 5610 4837 24 53 0 0 chr11 3697543 3697581 -145085891 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 3697643 3697664 -145085808 + AT_rich Low_complexity Low_complexity 1 21 0 579 252 26 26 chr11 3698009 3698164 -145085308 - MIR SINE MIR -102 160 6 1081 153 0 0 chr11 3700852 3701028 -145082444 - L1MA2 LINE L1 -40 6264 6089 294 311 97 104 chr11 3701271 3701560 -145081912 + L2 LINE L2 2980 3266 -6 15740 154 36 5 chr11 3701742 3704043 -145079429 + L1MA1 LINE L1 609 3008 -4557 2133 116 0 0 chr11 3704043 3704327 -145079145 + AluSp SINE Alu 3 286 -27 15740 154 36 5 chr11 3704327 3704703 -145078769 + L1MA1 LINE L1 3008 3371 -4194 1776 159 184 11 chr11 3704703 3705068 -145078404 - MSTA LTR MaLR 0 428 1 6826 163 5 12 chr11 3705068 3706230 -145077242 - MSTA-int LTR MaLR 0 1580 427 7480 160 134 7 chr11 3706290 3709098 -145074374 + L1MA1 LINE L1 4534 7721 0 24 0 0 0 chr11 3709842 3709866 -145073606 + AT_rich Low_complexity Low_complexity 1 24 0 770 114 93 0 chr11 3709866 3710006 -145073466 - L1MA5A LINE L1 0 6297 6145 1631 113 4 4 chr11 3712236 3712501 -145070971 - L1MA4A LINE L1 -1 6302 6038 209 338 0 0 chr11 3712534 3712611 -145070861 + L2 LINE L2 2175 2251 -1063 21 0 0 0 chr11 3712861 3712882 -145070590 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr11 3713092 3713130 -145070342 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr11 3713282 3713320 -145070152 + AT_rich Low_complexity Low_complexity 1 38 0 1044 263 121 52 chr11 3713828 3714887 -145068585 + L1MEc LINE L1 1737 2859 -3356 3962 167 27 36 chr11 3714956 3715784 -145067688 + L1MA9 LINE L1 5491 6310 -2 1077 268 75 18 chr11 3715831 3716483 -145066989 + L1MEc LINE L1 3282 4034 -2181 * 38872 74 5 3 chr11 3716482 3721667 -145061805 + L1P LINE L1 6 5198 -948 224 383 14 46 chr11 3723572 3723789 -145059683 + L2 LINE L2 2733 2942 -372 296 359 0 10 chr11 3726782 3726885 -145056587 + L2 LINE L2 1121 1222 -2092 26 0 0 0 chr11 3726887 3726913 -145056559 + AT_rich Low_complexity Low_complexity 1 26 0 233 164 0 18 chr11 3727301 3727356 -145056116 + CT-rich Low_complexity Low_complexity 1 54 0 221 167 0 0 chr11 3727360 3727402 -145056070 + (TAG)n Simple_repeat Simple_repeat 2 43 0 378 304 65 42 chr11 3727994 3728162 -145055310 + L1M4b LINE L1 1238 1409 -5450 5187 133 5 10 chr11 3728170 3729114 -145054358 + L1PA11 LINE L1 4501 5435 -739 2239 120 7 0 chr11 3729114 3729415 -145054057 - AluSg SINE Alu -7 303 1 5187 133 5 10 chr11 3729415 3729970 -145053502 + L1PA11 LINE L1 5435 5992 -182 9511 56 0 4 chr11 3729970 3731961 -145051511 + L1PA5 LINE L1 4166 6154 0 339 289 57 54 chr11 3731961 3732311 -145051161 + L1M4b LINE L1 2518 2868 -4270 1045 334 93 35 chr11 3732336 3733100 -145050372 - L2 LINE L2 -806 2508 1701 558 269 27 32 chr11 3733742 3733928 -145049544 + MIR SINE MIR 78 262 0 22 0 0 0 chr11 3735284 3735306 -145048166 + AT_rich Low_complexity Low_complexity 1 22 0 562 236 55 18 chr11 3735435 3735600 -145047872 - MIR SINE MIR -14 248 78 218 203 31 31 chr11 3735655 3735719 -145047753 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 737 249 53 0 chr11 3735832 3736021 -145047451 + MER3 DNA MER1_type 9 207 -2 275 85 21 0 chr11 3736268 3736315 -145047157 + (TG)n Simple_repeat Simple_repeat 1 48 0 1662 230 38 38 chr11 3737059 3737563 -145045909 - MLT1D LTR MaLR -1 504 1 772 239 29 34 chr11 3739287 3739496 -145043976 + MER3 DNA MER1_type 1 208 -1 1185 221 46 57 chr11 3739611 3739978 -145043494 - L1ME1 LINE L1 -19 6147 5785 22 0 0 0 chr11 3740091 3740113 -145043359 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 3740147 3740168 -145043304 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 88 44 chr11 3740290 3740403 -145043069 + L2 LINE L2 3195 3312 -1 2041 128 0 0 chr11 3740680 3740962 -145042510 + AluSg SINE Alu 1 282 -28 447 245 128 41 chr11 3741251 3741447 -145042025 + MIR SINE MIR 49 261 -1 225 341 101 8 chr11 3743396 3743525 -145039947 + MIR SINE MIR 26 166 -96 21 0 0 0 chr11 3744761 3744782 -145038690 + AT_rich Low_complexity Low_complexity 1 21 0 339 260 91 67 chr11 3746432 3746640 -145036832 + MER46C DNA MER2_type 1 213 -125 1501 167 70 56 chr11 3747051 3747393 -145036079 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr11 3747991 3748012 -145035460 + AT_rich Low_complexity Low_complexity 1 21 0 438 361 17 22 chr11 3748056 3748286 -145035186 + MIR SINE MIR 12 240 -22 189 380 67 36 chr11 3749543 3749738 -145033734 - L2 LINE L2 -33 3239 3039 1535 181 78 6 chr11 3750968 3751288 -145032184 + MER2 DNA MER2_type 2 344 0 423 0 0 0 chr11 3752782 3752829 -145030643 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1983 198 70 5 chr11 3752941 3753341 -145030131 - MSTB LTR MaLR 0 426 1 31 68 0 0 chr11 3755112 3755171 -145028301 + AT_rich Low_complexity Low_complexity 1 59 0 318 311 228 14 chr11 3755514 3755733 -145027739 + L2 LINE L2 2872 3137 -176 678 158 7 82 chr11 3755938 3756084 -145027388 + FLAM_C SINE Alu 6 140 -3 332 257 178 0 chr11 3756321 3756422 -145027050 - MIR SINE MIR -40 222 104 21 0 0 0 chr11 3756519 3756540 -145026932 + AT_rich Low_complexity Low_complexity 1 21 0 1373 175 51 25 chr11 3757768 3758042 -145025430 + AluJo SINE Alu 1 281 -31 691 280 86 76 chr11 3758916 3759226 -145024246 - L1MEc LINE L1 -3586 2629 2323 291 28 0 0 chr11 3759226 3759262 -145024210 + (CA)n Simple_repeat Simple_repeat 2 37 0 2178 118 3 0 chr11 3759267 3759564 -145023908 - AluSc SINE Alu -11 298 1 691 280 86 76 chr11 3759564 3760547 -145022925 - L1MEc LINE L1 -3895 2320 1366 315 0 0 0 chr11 3760954 3760989 -145022483 + (TG)n Simple_repeat Simple_repeat 2 36 0 527 361 51 16 chr11 3761001 3761256 -145022216 - LTR16A LTR ERVL -84 366 103 327 338 20 35 chr11 3761700 3761898 -145021574 - ERVL LTR ERVL -609 5155 4961 37 0 0 0 chr11 3761898 3761935 -145021537 + AT_rich Low_complexity Low_complexity 1 37 0 520 405 57 17 chr11 3762341 3763202 -145020270 - ERVL LTR ERVL -1195 4459 3565 2357 73 0 7 chr11 3763262 3763562 -145019910 - AluY SINE Alu -13 298 1 369 304 22 44 chr11 3764010 3764191 -145019281 - ERVL LTR ERVL -2429 2567 2391 1258 142 28 5 chr11 3764447 3764659 -145018813 - L1PA16 LINE L1 -234 5932 5716 236 121 61 15 chr11 3764658 3764724 -145018748 - L1M LINE L1 -2455 5330 5262 * 33 56 0 0 chr11 3765012 3765066 -145018406 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr11 3765211 3765236 -145018236 + AT_rich Low_complexity Low_complexity 1 25 0 369 273 117 0 chr11 3766292 3766420 -145017052 - MIR SINE MIR -80 182 40 272 319 122 30 chr11 3766490 3766785 -145016687 + L2 LINE L2 1979 2300 -1014 189 415 12 0 chr11 3766918 3767000 -145016472 - L2 LINE L2 -3 3269 3187 36 40 0 0 chr11 3767737 3767787 -145015685 + AT_rich Low_complexity Low_complexity 1 50 0 245 211 141 0 chr11 3768593 3768664 -145014808 + MIR SINE MIR 124 204 -58 2211 103 3 19 chr11 3768911 3769221 -145014251 + AluSq SINE Alu 1 305 -8 229 303 0 13 chr11 3769247 3769323 -145014149 - L1ME LINE L1 -466 5655 5581 192 282 12 82 chr11 3770630 3770715 -145012757 - L2 LINE L2 -213 3059 2981 1626 272 22 20 chr11 3772085 3772589 -145010883 - MLT1D LTR MaLR 0 505 1 273 215 78 112 chr11 3772698 3772903 -145010569 + L2 LINE L2 3105 3302 -11 228 241 138 0 chr11 3773477 3773535 -145009937 + L2 LINE L2 3145 3210 -62 790 297 114 25 chr11 3773640 3774044 -145009428 + L2 LINE L2 2862 3301 -12 287 313 73 13 chr11 3774257 3774407 -145009065 - MIR SINE MIR -34 228 70 2466 183 122 7 chr11 3774733 3775301 -145008171 + LTR24C LTR ERV1 1 633 -2 226 298 37 106 chr11 3775848 3776036 -145007436 + L2 LINE L2 2898 3072 -200 781 291 65 58 chr11 3776205 3776634 -145006838 - MLT1G1 LTR MaLR -163 432 1 1022 86 50 0 chr11 3778141 3778280 -145005192 + AluY SINE Alu 1 146 -165 401 228 134 13 chr11 3778298 3778447 -145005025 + LTR33 LTR ERVL 205 371 -150 268 283 11 0 chr11 3778564 3778656 -145004816 + T-rich Low_complexity Low_complexity 4 96 0 352 298 50 16 chr11 3779157 3779278 -145004194 + L2 LINE L2 3148 3272 0 236 376 30 0 chr11 3779317 3779450 -145004022 - MIR SINE MIR -74 188 52 443 314 15 7 chr11 3780084 3780221 -145003251 - MIR SINE MIR -102 160 23 309 89 0 0 chr11 3783356 3783401 -145000071 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 23 33 0 0 chr11 3783792 3783822 -144999650 + AT_rich Low_complexity Low_complexity 1 30 0 1674 145 25 7 chr11 3783839 3784122 -144999350 - L1PB4 LINE L1 -7 6149 5862 490 347 44 28 chr11 3785414 3785662 -144997810 + MIR SINE MIR 5 256 -6 2314 84 7 0 chr11 3787482 3787780 -144995692 + AluSc SINE Alu 1 300 -9 231 328 138 45 chr11 3787805 3788202 -144995270 - L2 LINE L2 -1330 1984 1551 979 265 177 38 chr11 3790038 3790491 -144992981 + MLT1E LTR MaLR 1 516 -77 6717 132 2 1 chr11 3790548 3792395 -144991077 - L1PA10 LINE L1 -4 6164 4304 1334 135 0 34 chr11 3792444 3792681 -144990791 - MSTB1 LTR MaLR 0 432 204 207 100 0 0 chr11 3792681 3792711 -144990761 + (GA)n Simple_repeat Simple_repeat 2 31 0 4214 173 9 9 chr11 3792718 3793461 -144990011 - L1PB4 LINE L1 -4 6152 5407 1800 179 124 16 chr11 3793461 3793847 -144989625 + MSTA LTR MaLR 1 428 0 4214 173 9 9 chr11 3793847 3793862 -144989610 - L1PB4 LINE L1 -748 5408 5394 301 320 33 33 chr11 3793956 3794106 -144989366 + MIR SINE MIR 18 167 -95 184 400 0 0 chr11 3794187 3794267 -144989205 - MIR SINE MIR -135 127 48 1837 270 65 42 chr11 3794389 3795226 -144988246 - L1ME3A LINE L1 -9 6161 5306 1104 283 164 50 chr11 3795264 3796584 -144986888 - L1ME3A LINE L1 -1202 4944 3475 1322 302 65 20 chr11 3796763 3797451 -144986021 - L1ME3A LINE L1 -160 6010 5292 721 211 108 18 chr11 3797499 3797722 -144985750 + L1ME1 LINE L1 5502 5744 -422 310 271 0 0 chr11 3797743 3797850 -144985622 + (TA)n Simple_repeat Simple_repeat 1 107 0 1078 234 97 9 chr11 3797852 3798202 -144985270 + L1ME1 LINE L1 5781 6161 -5 25 31 0 0 chr11 3798232 3798264 -144985208 + AT_rich Low_complexity Low_complexity 1 32 0 943 284 105 20 chr11 3798267 3798301 -144985171 - MLT1G1 LTR MaLR -2 593 563 2114 126 24 48 chr11 3798301 3798674 -144984798 + THE1B LTR MaLR 1 364 0 11325 106 6 1 chr11 3798674 3800246 -144983226 + THE1B-int LTR MaLR 1 1580 0 2092 122 30 43 chr11 3800246 3800614 -144982858 + THE1B LTR MaLR 1 363 -1 943 284 105 20 chr11 3800614 3800919 -144982553 - MLT1G1 LTR MaLR -31 564 223 913 269 170 14 chr11 3800956 3801391 -144982081 + MLT1D LTR MaLR 3 505 0 487 184 0 0 chr11 3801417 3801515 -144981957 - L1MA6 LINE L1 0 6300 6203 285 189 0 0 chr11 3801520 3801573 -144981899 + L1MA6 LINE L1 6108 6160 -140 613 259 29 0 chr11 3801592 3801731 -144981741 - MLT1G1 LTR MaLR -451 144 2 348 265 122 0 chr11 3801745 3801843 -144981629 - MER81 DNA DNA 0 114 5 234 0 0 0 chr11 3803102 3803128 -144980344 + (T)n Simple_repeat Simple_repeat 1 26 0 190 358 119 50 chr11 3804417 3804635 -144978837 - MIR SINE MIR -10 252 20 2131 93 0 30 chr11 3805954 3806256 -144977216 + AluSg SINE Alu 10 302 -8 260 304 74 30 chr11 3806947 3807082 -144976390 - L2 LINE L2 -6 3307 3167 516 283 40 29 chr11 3807869 3808042 -144975430 + MIR SINE MIR 46 220 -42 414 57 0 0 chr11 3811966 3812019 -144971453 + (GA)n Simple_repeat Simple_repeat 2 54 0 196 356 77 66 chr11 3812326 3812691 -144970781 + L2 LINE L2 2889 3257 -15 277 282 70 49 chr11 3813203 3813345 -144970127 - L2 LINE L2 0 3313 3169 25 0 0 0 chr11 3813845 3813870 -144969602 + AT_rich Low_complexity Low_complexity 1 25 0 2198 153 52 41 chr11 3815299 3815718 -144967754 - MSTB LTR MaLR -2 424 1 7659 179 13 55 chr11 3815723 3817439 -144966033 - MSTB-int LTR MaLR -6 1645 1 2256 144 47 43 chr11 3817441 3817668 -144965804 - MSTB LTR MaLR -2 424 192 1907 119 7 7 chr11 3817668 3817988 -144965484 - AluSc SINE Alu 0 322 3 2256 144 47 43 chr11 3817988 3818181 -144965291 - MSTB LTR MaLR -234 192 1 245 313 25 0 chr11 3818414 3818494 -144964978 + L2 LINE L2 3224 3305 -8 31 88 0 0 chr11 3818747 3818827 -144964645 + AT_rich Low_complexity Low_complexity 1 80 0 1915 164 7 3 chr11 3820814 3820943 -144962529 + AluSx SINE Alu 1 128 -184 192 40 0 0 chr11 3820943 3820968 -144962504 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1915 164 7 3 chr11 3820968 3821137 -144962335 + AluSx SINE Alu 128 300 -12 21 0 0 0 chr11 3821429 3821450 -144962022 + AT_rich Low_complexity Low_complexity 1 21 0 721 274 18 18 chr11 3821475 3821698 -144961774 - MER58A DNA MER1_type -1 223 1 186 255 78 20 chr11 3821743 3821794 -144961678 + L2 LINE L2 3244 3297 -16 4188 54 0 0 chr11 3822257 3822814 -144960658 - L1P LINE L1 -3379 2767 2211 33 25 0 0 chr11 3823202 3823242 -144960230 + AT_rich Low_complexity Low_complexity 1 40 0 1624 66 0 0 chr11 3823278 3823491 -144959981 - L1PA6 LINE L1 -451 5703 5491 3516 57 0 2 chr11 3823491 3823918 -144959554 + L1PA6 LINE L1 5705 6141 -13 1760 202 0 3 chr11 3823954 3824256 -144959216 - AluJo SINE Alu -11 301 1 242 267 39 17 chr11 3824293 3824424 -144959048 - MIR SINE MIR -62 146 16 2082 140 6 17 chr11 3827350 3827699 -144955773 - L1PA15 LINE L1 -4 6161 5817 252 333 0 0 chr11 3828161 3828242 -144955230 - L2 LINE L2 -2035 1279 1199 300 106 0 45 chr11 3828370 3828436 -144955036 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 863 188 30 99 chr11 3828505 3829103 -144954369 - MER4C LTR ERV1 -10 455 5 248 162 0 59 chr11 3829116 3829184 -144954288 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 561 138 0 0 chr11 3829233 3829313 -144954159 - AluSq SINE Alu -91 222 143 775 130 7 43 chr11 3829519 3829677 -144953795 - FLAM_C SINE Alu 0 133 1 585 286 65 21 chr11 3829680 3830065 -144953407 + L1ME3 LINE L1 4850 5251 -895 525 297 0 47 chr11 3830080 3830336 -144953136 + L1ME3 LINE L1 5294 5537 -627 629 251 67 17 chr11 3830344 3830583 -144952889 + L1ME3 LINE L1 5583 5833 -329 4155 90 17 80 chr11 3830988 3831697 -144951775 - MER4A LTR ERV1 0 664 1 223 245 20 0 chr11 3831988 3832037 -144951435 + MER5A DNA MER1_type 57 106 -83 2232 202 47 2 chr11 3832121 3832650 -144950822 - L1 LINE L1 -3094 3052 2500 2124 78 0 25 chr11 3832846 3833127 -144950345 - AluY SINE Alu -3 308 35 34 0 0 0 chr11 3833218 3833252 -144950220 + AT_rich Low_complexity Low_complexity 1 34 0 315 327 31 38 chr11 3833275 3833434 -144950038 + HAL1b LINE L1 731 888 -460 1580 213 10 19 chr11 3833453 3833763 -144949709 + AluJb SINE Alu 1 307 -5 23 54 0 0 chr11 3833799 3833836 -144949636 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 3834974 3834995 -144948477 + AT_rich Low_complexity Low_complexity 1 21 0 196 349 63 68 chr11 3835022 3835659 -144947813 - L2 LINE L2 -688 2626 1993 1916 167 6 6 chr11 3835718 3836029 -144947443 - AluJb SINE Alu -1 311 1 397 344 84 26 chr11 3836318 3836545 -144946927 + MIR SINE MIR 22 261 -1 212 228 0 35 chr11 3836628 3836801 -144946671 + CT-rich Low_complexity Low_complexity 1 166 0 270 305 172 0 chr11 3836881 3837032 -144946440 + MIR SINE MIR 86 262 0 485 363 73 23 chr11 3839189 3839848 -144943624 - HERVL LTR ERVL -1467 4187 3496 319 363 31 44 chr11 3839905 3840359 -144943113 - HERVL LTR ERVL -3479 2175 1728 581 196 35 85 chr11 3842035 3842234 -144941238 - LTR41 LTR ERVL -7 766 578 533 220 66 70 chr11 3842671 3842930 -144940542 - LTR41 LTR ERVL -491 282 25 23 33 0 0 chr11 3843772 3843802 -144939670 + AT_rich Low_complexity Low_complexity 1 30 0 300 377 41 8 chr11 3844501 3844623 -144938849 + L2 LINE L2 3147 3272 0 330 286 70 60 chr11 3847574 3847773 -144935699 - MER58C DNA MER1_type -14 201 1 432 291 152 19 chr11 3849695 3849853 -144933619 + MER5A DNA MER1_type 10 188 -1 305 288 69 32 chr11 3850791 3850982 -144932490 + MIR3 SINE MIR 14 212 -50 21 71 0 0 chr11 3851047 3851089 -144932383 + AT_rich Low_complexity Low_complexity 1 42 0 215 158 26 0 chr11 3851315 3851353 -144932119 + CT-rich Low_complexity Low_complexity 2 40 0 357 24 0 0 chr11 3851354 3851396 -144932076 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 365 63 16 chr11 3851789 3851978 -144931494 + MIR3 SINE MIR 10 207 -1 24 32 0 0 chr11 3852126 3852157 -144931315 + AT_rich Low_complexity Low_complexity 1 31 0 266 187 66 11 chr11 3852532 3852623 -144930849 + (TA)n Simple_repeat Simple_repeat 1 96 0 2145 80 60 30 chr11 3852804 3853103 -144930369 - AluSx SINE Alu -4 308 1 21 0 0 0 chr11 3853272 3853293 -144930179 + AT_rich Low_complexity Low_complexity 1 21 0 446 139 13 0 chr11 3853591 3853670 -144929802 + MADE1 DNA Mariner 1 80 0 1204 246 14 14 chr11 3853672 3853957 -144929515 - AluJo SINE Alu -17 295 11 333 294 56 21 chr11 3853968 3854111 -144929361 + L1MC/D LINE L1 5297 5444 -740 21 82 0 0 chr11 3854119 3854168 -144929304 + AT_rich Low_complexity Low_complexity 1 49 0 43 56 0 0 chr11 3854351 3854422 -144929050 + AT_rich Low_complexity Low_complexity 1 71 0 2364 100 3 3 chr11 3854491 3854802 -144928670 + AluY SINE Alu 1 311 0 300 328 17 0 chr11 3854954 3855073 -144928399 + L1MC/D LINE L1 5684 5804 -2004 1511 234 37 85 chr11 3855181 3855778 -144927694 + L1M1 LINE L1 8 575 -6990 3904 77 12 2 chr11 3855927 3856514 -144926958 - L1P LINE L1 -2286 3860 3268 218 200 0 0 chr11 3858509 3858554 -144924918 + A-rich Low_complexity Low_complexity 2 46 0 267 375 86 36 chr11 3858874 3859178 -144924294 - L3 LINE CR1 -5 1572 1254 255 341 72 7 chr11 3859183 3859321 -144924151 + L2 LINE L2 3158 3304 -9 31 0 0 0 chr11 3860117 3860148 -144923324 + AT_rich Low_complexity Low_complexity 1 31 0 256 274 48 25 chr11 3860999 3861202 -144922270 - L1M LINE L1 -766 5380 5188 417 267 185 20 chr11 3861543 3861689 -144921783 - MER5A DNA MER1_type -2 187 18 2338 89 0 22 chr11 3861863 3862178 -144921294 + AluSc SINE Alu 2 309 0 194 91 30 0 chr11 3862352 3862385 -144921087 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 304 337 56 59 chr11 3862429 3862735 -144920737 - L1M4 LINE L1 -1973 4173 3869 984 201 23 27 chr11 3863563 3863782 -144919690 - MER20 DNA MER1_type -1 218 1 287 281 61 35 chr11 3864346 3864460 -144919012 + MIR SINE MIR 33 149 -113 213 287 60 60 chr11 3865006 3865222 -144918250 - L2 LINE L2 0 3313 3098 417 198 0 23 chr11 3865680 3865766 -144917706 + L1PA16 LINE L1 5978 6061 -105 21 0 0 0 chr11 3868407 3868428 -144915044 + AT_rich Low_complexity Low_complexity 1 21 0 240 371 29 0 chr11 3868435 3868540 -144914932 - MIR SINE MIR -108 154 47 239 176 139 46 chr11 3868922 3869030 -144914442 + LTR38B LTR ERV1 1 118 -492 1826 111 19 8 chr11 3869143 3869404 -144914068 - AluSx SINE Alu -9 303 40 300 292 40 86 chr11 3869544 3869865 -144913607 + LTR38 LTR ERV1 291 556 0 317 89 40 40 chr11 3869986 3870087 -144913385 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2600 46 0 0 chr11 3870420 3870725 -144912747 + AluY SINE Alu 1 305 -6 6756 165 29 26 chr11 3872066 3873310 -144910162 - Ricksha_b DNA DNA -7 1247 1 210 71 95 0 chr11 3873486 3873528 -144909944 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3862 83 2 0 chr11 3874533 3875065 -144908407 + L1P LINE L1 4329 4861 -1285 269 192 0 0 chr11 3875084 3875136 -144908336 + LTR49-int LTR ERV1 4994 5045 -1286 3524 123 18 5 chr11 3875136 3875957 -144907515 - L1PA11 LINE L1 -579 5595 4769 4105 118 2 5 chr11 3875957 3876552 -144906920 + L1PA11 LINE L1 5565 6163 -11 938 285 30 65 chr11 3876559 3877053 -144906419 + LTR49-int LTR ERV1 3764 4240 -696 1338 218 38 50 chr11 3877066 3877484 -144905988 + LTR37A LTR ERV1 4 416 -10 1401 214 13 105 chr11 3877552 3878076 -144905396 - MER31A LTR ERV1 -9 476 1 1350 210 68 87 chr11 3878199 3878670 -144904802 - MER31A-int LTR ERV1 -100 4836 4375 3270 205 53 13 chr11 3878746 3879540 -144903932 - MER31A-int LTR ERV1 -727 4209 3384 1296 226 57 17 chr11 3879541 3879943 -144903529 - MER31A-int LTR ERV1 -1763 3173 2756 3071 214 56 77 chr11 3880041 3882010 -144901462 - MER31A-int LTR ERV1 -2372 2564 654 337 313 57 60 chr11 3882013 3882348 -144901124 - L1M2b LINE L1 -5414 1795 1462 653 321 5 5 chr11 3882402 3882598 -144900874 - MER31A-int LTR ERV1 -4524 412 217 412 170 85 32 chr11 3882605 3882699 -144900773 - MER31A-int LTR ERV1 -4670 266 168 604 209 102 53 chr11 3882887 3883107 -144900365 - MER31A LTR ERV1 -2 483 253 1940 180 43 38 chr11 3883107 3883529 -144899943 - MSTB1 LTR MaLR 0 432 9 682 237 73 78 chr11 3883535 3883780 -144899692 - MER31B LTR ERV1 -222 244 1 22 0 0 0 chr11 3883894 3883916 -144899556 + AT_rich Low_complexity Low_complexity 1 22 0 2946 66 5 0 chr11 3886206 3886586 -144896886 + L1PA10 LINE L1 5776 6157 -11 884 339 37 15 chr11 3888635 3889036 -144894436 - LTR16A LTR ERVL 0 450 41 1875 164 24 34 chr11 3889357 3889736 -144893736 + THE1C LTR MaLR 1 375 0 847 324 39 6 chr11 3890260 3890596 -144892876 + HERV16 LTR ERVL 736 1082 -3914 326 314 80 5 chr11 3890597 3890785 -144892687 + HERV16 LTR ERVL 1602 1803 -3193 395 330 38 28 chr11 3890830 3891442 -144892030 + HERV16 LTR ERVL 1906 2677 -2319 23 54 0 0 chr11 3891961 3891998 -144891474 + AT_rich Low_complexity Low_complexity 1 37 0 411 287 8 59 chr11 3892451 3892688 -144890784 + HAL1 LINE L1 2277 2501 -6 4770 149 107 70 chr11 3892723 3893907 -144889565 - Tigger3b DNA MER2_type -2 1229 2 236 316 13 13 chr11 3893948 3894027 -144889445 + MIR SINE MIR 63 141 -121 24 0 0 0 chr11 3894371 3894395 -144889077 + AT_rich Low_complexity Low_complexity 1 24 0 604 219 50 60 chr11 3894481 3894682 -144888790 - MIR SINE MIR -1 261 63 249 330 29 0 chr11 3896457 3896560 -144886912 - MIR SINE MIR -10 252 147 216 0 0 0 chr11 3896951 3896975 -144886497 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 193 60 133 chr11 3897965 3898048 -144885424 + L2 LINE L2 3237 3313 0 263 247 123 25 chr11 3898555 3898636 -144884836 - MIR SINE MIR -92 116 28 262 254 41 75 chr11 3899186 3899325 -144884147 + MIR SINE MIR 9 151 -57 23 0 0 0 chr11 3899792 3899815 -144883657 + AT_rich Low_complexity Low_complexity 1 23 0 335 0 0 41 chr11 3900321 3900370 -144883102 - L1PA3 LINE L1 0 6155 6109 251 379 110 9 chr11 3901407 3901734 -144881738 + LTR16A LTR ERVL 1 360 -90 24 0 0 0 chr11 3901999 3902023 -144881449 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 3902075 3902103 -144881369 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr11 3902679 3902735 -144880737 + AT_rich Low_complexity Low_complexity 1 56 0 183 245 122 61 chr11 3903085 3903183 -144880289 - L3 LINE CR1 -1390 187 84 564 278 192 30 chr11 3903412 3903887 -144879585 + MLT1G LTR MaLR 22 573 -17 239 333 70 0 chr11 3904413 3904527 -144878945 - L2 LINE L2 0 3313 3192 279 53 70 0 chr11 3904670 3904727 -144878745 + T-rich Low_complexity Low_complexity 2 62 0 18886 29 0 0 chr11 3904730 3907753 -144875719 - L1PA2 LINE L1 -2 6153 3131 460 125 11 11 chr11 3908728 3908816 -144874656 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 197 128 0 26 chr11 3908920 3908959 -144874513 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr11 3910242 3910265 -144873207 + AT_rich Low_complexity Low_complexity 1 23 0 489 255 163 0 chr11 3910353 3910506 -144872966 + MER5A DNA MER1_type 12 189 0 276 224 250 0 chr11 3910869 3910985 -144872487 + MIR SINE MIR 117 261 -1 271 180 0 0 chr11 3911268 3911329 -144872143 - L1MA8 LINE L1 -4 6287 6227 22 0 0 0 chr11 3914469 3914491 -144868981 + AT_rich Low_complexity Low_complexity 1 22 0 423 83 0 0 chr11 3916830 3916890 -144866582 + (TG)n Simple_repeat Simple_repeat 1 60 0 1284 226 51 0 chr11 3918454 3918729 -144864743 + AluJo SINE Alu 10 298 -14 381 122 0 37 chr11 3918729 3918811 -144864661 + (GGA)n Simple_repeat Simple_repeat 1 79 0 25 31 0 0 chr11 3919004 3919036 -144864436 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 3919141 3919164 -144864308 + AT_rich Low_complexity Low_complexity 1 23 0 1381 170 49 61 chr11 3919249 3919578 -144863894 - MER44D DNA MER2_type 0 609 15 21 36 0 0 chr11 3919691 3919719 -144863753 + AT_rich Low_complexity Low_complexity 1 28 0 566 290 82 34 chr11 3919800 3920412 -144863060 + L1M4 LINE L1 4408 5047 -1099 * 3354 181 40 14 chr11 3920406 3921101 -144862371 + L1MA7 LINE L1 5491 6203 -88 409 141 76 0 chr11 3921204 3921296 -144862176 + L1MA7 LINE L1 6186 6284 -7 280 295 147 8 chr11 3921321 3921450 -144862022 - MIR SINE MIR -31 231 85 546 260 39 0 chr11 3921626 3921780 -144861692 + L1MCb LINE L1 570 729 -5316 1508 164 75 4 chr11 3921799 3922079 -144861393 - MER7A DNA MER2_type -1 345 48 1712 99 0 0 chr11 3922092 3922325 -144861147 - L1PA10 LINE L1 -168 6000 5768 1309 163 9 70 chr11 3922425 3922769 -144860703 + Ricksha DNA DNA 2922 3244 -7 2606 49 0 0 chr11 3924110 3924418 -144859054 - AluY SINE Alu -3 308 1 317 89 40 40 chr11 3924751 3924852 -144858620 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 300 292 40 86 chr11 3924973 3925294 -144858178 - LTR38 LTR ERV1 0 564 291 1826 111 19 8 chr11 3925432 3925693 -144857779 + AluSx SINE Alu 40 303 -9 239 176 139 46 chr11 3925806 3925914 -144857558 - LTR38B LTR ERV1 -492 118 1 240 371 29 0 chr11 3926296 3926401 -144857071 + MIR SINE MIR 47 154 -108 21 0 0 0 chr11 3926408 3926429 -144857043 + AT_rich Low_complexity Low_complexity 1 21 0 362 205 0 12 chr11 3929073 3929156 -144854316 - L1PA16 LINE L1 -105 6061 5980 2166 110 0 7 chr11 3929311 3929603 -144853869 - AluSx SINE Alu -22 290 1 232 385 111 26 chr11 3929627 3930095 -144853377 + L2 LINE L2 2804 3311 -2 299 259 132 63 chr11 3930562 3930751 -144852721 - MIR SINE MIR -28 234 33 21 36 0 0 chr11 3931165 3931193 -144852279 + AT_rich Low_complexity Low_complexity 1 28 0 1020 194 17 0 chr11 3931806 3931986 -144851486 - AluJb SINE Alu -1 311 129 2433 86 0 6 chr11 3931988 3932302 -144851170 - AluSx SINE Alu 0 312 1 648 70 0 0 chr11 3932372 3932458 -144851014 + (TC)n Simple_repeat Simple_repeat 2 87 0 294 29 0 0 chr11 3932459 3932494 -144850978 - AluSp/q SINE Alu -21 282 248 1094 121 6 6 chr11 3932494 3932651 -144850821 - AluSx SINE Alu -155 157 1 204 182 0 0 chr11 3932697 3932741 -144850731 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2562 45 3 0 chr11 3932877 3933186 -144850286 - AluY SINE Alu -1 310 1 724 146 48 24 chr11 3933855 3934020 -144849452 + ORSL DNA AcHobo 91 259 -16 23 0 0 0 chr11 3935746 3935769 -144847703 + AT_rich Low_complexity Low_complexity 1 23 0 400 279 79 57 chr11 3938293 3938558 -144844914 + L1M4 LINE L1 3198 3468 -2678 1331 297 66 30 chr11 3938716 3939773 -144843699 + L1M4 LINE L1 3588 4682 -1464 559 203 63 13 chr11 3941365 3941523 -144841949 + L1MA9 LINE L1 5939 6104 -208 341 161 0 0 chr11 3941651 3941707 -144841765 + L1MA9 LINE L1 6104 6159 -153 228 111 0 0 chr11 3941763 3941799 -144841673 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 186 209 0 0 chr11 3942125 3942168 -144841304 + T-rich Low_complexity Low_complexity 1 43 0 485 71 14 0 chr11 3942171 3942241 -144841231 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 224 130 22 0 chr11 3942244 3942290 -144841182 + CT-rich Low_complexity Low_complexity 2 48 0 456 77 0 0 chr11 3943658 3943723 -144839749 + (CA)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr11 3943907 3943944 -144839528 + AT_rich Low_complexity Low_complexity 1 37 0 333 279 90 23 chr11 3945865 3946115 -144837357 - LTR36 LTR ERV1 0 611 345 2113 131 0 0 chr11 3946199 3946504 -144836968 - AluSx SINE Alu -7 305 1 242 188 14 14 chr11 3946578 3946647 -144836825 - LTR36 LTR ERV1 -472 139 71 728 283 61 5 chr11 3947403 3947601 -144835871 - MER63A DNA MER1_type -1 209 1 1017 301 71 31 chr11 3947747 3948169 -144835303 + LTR16A LTR ERVL 1 439 -11 2354 201 126 24 chr11 3948248 3948906 -144834566 - MER50 LTR ERV1 0 734 10 310 204 121 25 chr11 3949083 3949240 -144834232 - L1M4 LINE L1 -897 5137 4966 316 172 60 48 chr11 3949243 3949370 -144834102 - LTR41 LTR ERVL -2 793 650 522 258 26 13 chr11 3949895 3950050 -144833422 - LTR41 LTR ERVL -616 157 1 2009 140 66 3 chr11 3950285 3950649 -144832823 + LTR34 LTR ERV1 313 699 0 336 223 39 31 chr11 3950718 3950848 -144832624 - L1M4 LINE L1 -1302 4732 4602 2171 137 5 39 chr11 3950896 3951284 -144832188 + THE1C LTR MaLR 1 375 0 2274 124 3 17 chr11 3951309 3951655 -144831817 + THE1C-int LTR MaLR 1240 1580 0 1745 162 90 9 chr11 3951657 3952002 -144831470 + THE1C LTR MaLR 3 375 0 330 303 60 0 chr11 3952096 3952281 -144831191 - L1M4 LINE L1 -1594 4440 4245 4023 137 32 33 chr11 3952548 3953276 -144830196 - LTR8A LTR ERV1 0 727 1 186 71 0 0 chr11 3953494 3953522 -144829950 + (CA)n Simple_repeat Simple_repeat 1 28 0 509 332 26 5 chr11 3954214 3954407 -144829065 - MIR SINE MIR -46 216 20 2419 84 0 3 chr11 3954412 3954723 -144828749 - AluSg SINE Alu 0 310 1 796 246 47 9 chr11 3954844 3955055 -144828417 - MER20 DNA MER1_type 0 219 1 218 336 199 0 chr11 3957501 3957647 -144825825 - MIR SINE MIR -21 241 67 235 370 71 28 chr11 3958627 3958838 -144824634 + L2 LINE L2 2460 2679 -635 225 345 48 12 chr11 3959141 3959225 -144824247 + L2 LINE L2 2998 3084 -188 763 165 0 0 chr11 3959392 3959507 -144823965 + FLAM_A SINE Alu 9 123 -19 1829 144 0 0 chr11 3959511 3959795 -144823677 + AluSc SINE Alu 22 305 0 262 356 20 45 chr11 3961834 3962036 -144821436 + L2 LINE L2 1767 1963 -1351 2904 201 86 24 chr11 3962044 3962834 -144820638 - L1MC3 LINE L1 0 7785 6947 2209 235 95 74 chr11 3962845 3963753 -144819719 - L1MEc LINE L1 -2646 3736 2789 1536 181 3 45 chr11 3963753 3964077 -144819395 + AluJo SINE Alu 3 314 0 2209 235 95 74 chr11 3964077 3964434 -144819038 - L1MEc LINE L1 -3593 2789 2441 4021 206 40 6 chr11 3964670 3964733 -144818739 - L1MA9 LINE L1 -75 6237 6178 230 0 33 0 chr11 3964733 3964763 -144818709 + (TG)n Simple_repeat Simple_repeat 2 32 0 4021 206 40 6 chr11 3964763 3965568 -144817904 - L1MA9 LINE L1 -134 6178 5339 2772 296 22 10 chr11 3965561 3967455 -144816017 - L1M4 LINE L1 -4401 1634 12 * 323 253 90 24 chr11 3967478 3967773 -144815699 - L1MEc LINE L1 -3953 2471 2110 5052 164 35 9 chr11 3967776 3968719 -144814753 - Tigger1 DNA MER2_type -6 2412 1446 8614 244 24 27 chr11 3968719 3974380 -144809092 + L1PA12 LINE L1 1 5113 -2471 2008 148 0 0 chr11 3974380 3974670 -144808802 + AluSx SINE Alu 1 290 -22 566 299 87 71 chr11 3974830 3975083 -144808389 - L1M4 LINE L1 -1505 4641 4394 3160 143 12 0 chr11 3975083 3975594 -144807878 - L1PA15 LINE L1 -4 6161 5645 3060 178 18 5 chr11 3975594 3976167 -144807305 + LTR22 LTR ERVK 1 580 0 566 299 87 71 chr11 3976167 3976616 -144806856 - L1M4 LINE L1 -1752 4394 3911 1429 113 102 4 chr11 3976616 3976891 -144806581 + L1MA3 LINE L1 6003 6304 -1 566 299 87 71 chr11 3976891 3977277 -144806195 - L1M4 LINE L1 -2235 3911 3533 235 296 45 34 chr11 3978110 3978198 -144805274 + MER5B DNA MER1_type 8 96 -82 1029 275 53 6 chr11 3978210 3978552 -144804920 - L1ME LINE L1 -391 5771 5414 1643 180 42 19 chr11 3978663 3979024 -144804448 - L1MA7 LINE L1 -129 6162 5794 341 316 137 0 chr11 3979113 3979325 -144804147 - L1ME LINE L1 -1058 5088 4848 256 281 0 47 chr11 3979326 3979390 -144804082 - MER5B DNA MER1_type -110 68 8 324 260 91 25 chr11 3979523 3979808 -144803664 - L1ME LINE L1 -2872 3274 2971 261 185 46 62 chr11 3980180 3980245 -144803227 - L2 LINE L2 0 3313 3250 252 309 52 16 chr11 3980904 3981030 -144802442 + MIR SINE MIR 45 176 -62 411 198 0 23 chr11 3983664 3983750 -144799722 - L1PA16 LINE L1 -105 6061 5978 199 319 85 32 chr11 3984330 3984424 -144799048 + L2 LINE L2 3174 3272 0 276 278 52 35 chr11 3984970 3985085 -144798387 - MIR SINE MIR -113 149 33 967 206 23 27 chr11 3985649 3985868 -144797604 + MER20 DNA MER1_type 1 218 -1 310 337 56 59 chr11 3986696 3987002 -144796470 + L1MB1 LINE L1 3869 4173 -1973 22 0 0 0 chr11 3987044 3987066 -144796406 + AT_rich Low_complexity Low_complexity 1 22 0 2223 95 0 23 chr11 3987242 3987548 -144795924 - AluSc SINE Alu -9 300 2 426 267 185 20 chr11 3987716 3987862 -144795610 + MER5A DNA MER1_type 18 187 -2 250 284 58 23 chr11 3988203 3988400 -144795072 + L1MB1 LINE L1 5188 5384 -747 31 0 0 0 chr11 3989257 3989288 -144794184 + AT_rich Low_complexity Low_complexity 1 31 0 264 364 40 7 chr11 3990084 3990235 -144793237 - L2 LINE L2 -9 3304 3149 * 284 359 92 43 chr11 3990227 3990531 -144792941 + L3 LINE CR1 1254 1572 -5 218 200 0 0 chr11 3990851 3990896 -144792576 + T-rich Low_complexity Low_complexity 2 46 0 1415 206 120 5 chr11 3992987 3993355 -144790117 + L1MB1 LINE L1 5768 6177 -12 27 0 0 0 chr11 3993364 3993391 -144790081 + AT_rich Low_complexity Low_complexity 1 27 0 416 202 0 12 chr11 3993395 3993479 -144789993 - MLT1C LTR MaLR -384 83 1 411 335 45 15 chr11 3993489 3993689 -144789783 + HAL1 LINE L1 1599 1804 -703 32 95 0 0 chr11 3994530 3994625 -144788847 + AT_rich Low_complexity Low_complexity 1 95 0 565 343 44 0 chr11 3994632 3994836 -144788636 - MIR SINE MIR -17 245 33 21 36 0 0 chr11 3995684 3995712 -144787760 + AT_rich Low_complexity Low_complexity 1 28 0 267 189 0 0 chr11 3998715 3998768 -144784704 + CT-rich Low_complexity Low_complexity 4 56 0 423 273 66 0 chr11 4000034 4000155 -144783317 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr11 4000283 4000305 -144783167 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr11 4000383 4000426 -144783046 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 21 95 0 0 chr11 4000604 4000667 -144782805 + AT_rich Low_complexity Low_complexity 1 63 0 414 335 52 47 chr11 4000788 4001272 -144782200 - L1MEd LINE L1 -856 1634 1050 9838 155 42 16 chr11 4001338 4002277 -144781195 + Tigger1 DNA MER2_type 304 1217 -1201 1990 95 23 36 chr11 4002277 4002582 -144780890 - AluSc SINE Alu -8 301 1 9838 155 42 16 chr11 4002582 4003549 -144779923 + Tigger1 DNA MER2_type 1217 2323 -95 2017 170 100 0 chr11 4003549 4003938 -144779534 - MSTC LTR MaLR 0 428 1 9838 155 42 16 chr11 4003938 4004037 -144779435 + Tigger1 DNA MER2_type 2323 2418 0 462 332 14 36 chr11 4004488 4004711 -144778761 - MIR SINE MIR -34 228 11 21 0 0 0 chr11 4005027 4005048 -144778424 + AT_rich Low_complexity Low_complexity 1 21 0 180 200 0 0 chr11 4005639 4005684 -144777788 + CT-rich Low_complexity Low_complexity 2 46 0 24 0 0 0 chr11 4005709 4005733 -144777739 + AT_rich Low_complexity Low_complexity 1 24 0 266 164 0 16 chr11 4008243 4008304 -144775168 + CT-rich Low_complexity Low_complexity 3 62 0 22 80 0 0 chr11 4009232 4009282 -144774190 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr11 4009739 4009782 -144773690 + AT_rich Low_complexity Low_complexity 1 43 0 2539 182 11 17 chr11 4009783 4010304 -144773168 - L1PA16 LINE L1 -4 6162 5645 656 97 0 19 chr11 4010701 4010804 -144772668 + L1MA2 LINE L1 6197 6297 -7 22 0 0 0 chr11 4010824 4010846 -144772626 + AT_rich Low_complexity Low_complexity 1 22 0 356 322 24 10 chr11 4010874 4011079 -144772393 + L1MD1 LINE L1 4657 4864 -1282 1708 252 56 12 chr11 4011575 4012091 -144771381 - L1MB8 LINE L1 -42 6136 5598 * 2718 204 105 24 chr11 4012086 4012827 -144770645 + L1MD1 LINE L1 5404 6204 -38 23 0 0 0 chr11 4012844 4012867 -144770605 + AT_rich Low_complexity Low_complexity 1 23 0 504 284 36 13 chr11 4012886 4013111 -144770361 - L1MEc LINE L1 -3457 2758 2529 776 302 101 21 chr11 4013132 4013645 -144769827 - L1MEc LINE L1 -3918 2478 1925 261 276 0 0 chr11 4013711 4013769 -144769703 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2908 147 8 25 chr11 4013774 4014283 -144769189 + Tigger3(Golem) DNA MER2_type 2529 3028 -1 389 264 31 109 chr11 4014366 4014559 -144768913 + MER58A DNA MER1_type 27 204 -20 610 125 62 0 chr11 4014787 4014883 -144768589 - AluSq/x SINE Alu -206 107 6 2245 75 0 0 chr11 4014897 4015209 -144768263 - AluY SINE Alu 0 312 1 459 289 30 6 chr11 4015235 4015401 -144768071 - L1M4 LINE L1 -1795 5770 5601 4461 54 0 14 chr11 4015408 4015986 -144767486 - L1PA8 LINE L1 -5 6167 5598 1245 72 0 0 chr11 4015986 4016153 -144767319 + L1PA8 LINE L1 5416 5582 -590 714 268 44 12 chr11 4016158 4016408 -144767064 - L1M4 LINE L1 -1988 5577 5320 26 50 0 0 chr11 4016463 4016503 -144766969 + AT_rich Low_complexity Low_complexity 1 40 0 1155 226 7 14 chr11 4018514 4018801 -144764671 - L1MC3 LINE L1 0 7785 7501 1383 131 5 5 chr11 4019154 4019360 -144764112 + AluSg/x SINE Alu 95 300 -12 1890 154 0 3 chr11 4021651 4021943 -144761529 - AluSx SINE Alu -19 293 3 1047 224 94 31 chr11 4022948 4023328 -144760144 - L1MCc LINE L1 -4157 3409 2785 364 20 0 0 chr11 4023465 4023514 -144759958 + L1PA15 LINE L1 6110 6158 -7 252 265 105 50 chr11 4023670 4023851 -144759621 + L2 LINE L2 1813 2003 -1311 325 298 0 8 chr11 4023854 4023975 -144759497 + (TA)n Simple_repeat Simple_repeat 1 120 0 257 275 0 0 chr11 4023982 4024062 -144759410 + L1MC4 LINE L1 6624 6703 -1339 259 51 26 0 chr11 4024309 4024348 -144759124 + L1PA13 LINE L1 6111 6150 -13 324 209 26 26 chr11 4024354 4024469 -144759003 + (TA)n Simple_repeat Simple_repeat 2 116 0 447 356 108 53 chr11 4024473 4025184 -144758288 + L2 LINE L2 2031 2780 -534 21 57 0 0 chr11 4026586 4026621 -144756851 + AT_rich Low_complexity Low_complexity 1 35 0 674 262 69 57 chr11 4027182 4027453 -144756019 + MLT1D LTR MaLR 88 354 -151 36 23 0 0 chr11 4027795 4027838 -144755634 + AT_rich Low_complexity Low_complexity 1 43 0 186 428 11 0 chr11 4028935 4029034 -144754438 - MIR SINE MIR -61 147 50 339 25 0 0 chr11 4029386 4029426 -144754046 + (CA)n Simple_repeat Simple_repeat 2 41 0 315 258 0 43 chr11 4032833 4032926 -144750546 - L1MCc LINE L1 -5517 1530 1442 532 305 147 31 chr11 4033017 4033466 -144750006 - L1MCc LINE L1 -5850 1197 697 215 317 143 19 chr11 4033618 4033779 -144749693 + MER5A DNA MER1_type 4 184 -5 195 100 0 0 chr11 4033920 4033950 -144749522 + (CA)n Simple_repeat Simple_repeat 2 31 0 665 333 24 4 chr11 4034038 4034290 -144749182 + MIR SINE MIR 5 261 -1 213 289 0 0 chr11 4035292 4035337 -144748135 - MER5B DNA MER1_type -8 170 126 322 235 43 43 chr11 4035353 4035468 -144748004 - L1ME1 LINE L1 -210 5956 5842 366 307 51 31 chr11 4035480 4035869 -144747603 + L1MEc LINE L1 1580 1880 -4502 329 107 0 18 chr11 4035892 4035948 -144747524 + (TTC)n Simple_repeat Simple_repeat 2 56 0 345 282 301 0 chr11 4036423 4036586 -144746886 - MIR SINE MIR -23 239 28 2317 222 58 30 chr11 4037499 4038816 -144744656 + L1M2 LINE L1 2295 3652 -3196 550 290 68 17 chr11 4039031 4039324 -144744148 + L1M2 LINE L1 3635 3942 -2906 873 199 10 10 chr11 4039324 4039520 -144743952 + L1M2 LINE L1 4451 4646 -2202 * 4001 203 19 8 chr11 4039519 4040526 -144742946 + L1M2 LINE L1 5164 6178 -743 894 184 6 17 chr11 4041271 4041445 -144742027 + FRAM SINE Alu 1 167 -9 245 387 73 0 chr11 4042149 4042286 -144741186 - MIR SINE MIR -99 163 17 25 65 0 0 chr11 4043170 4043216 -144740256 + AT_rich Low_complexity Low_complexity 1 46 0 1288 223 38 3 chr11 4043342 4043633 -144739839 - MER82 DNA MER2_type -154 499 199 1432 186 108 41 chr11 4043737 4044106 -144739366 + LTR54B LTR ERV1 1 409 -89 1711 155 55 0 chr11 4044106 4044397 -144739075 - AluSx SINE Alu -4 308 2 1432 186 108 41 chr11 4044397 4044490 -144738982 + LTR54B LTR ERV1 409 494 -4 595 253 52 26 chr11 4044921 4045075 -144738397 - MER82 DNA MER2_type -451 202 45 1071 216 132 70 chr11 4045090 4045589 -144737883 - MER61E LTR ERV1 -39 530 1 369 0 0 0 chr11 4045637 4045678 -144737794 + (TG)n Simple_repeat Simple_repeat 2 42 0 1841 258 36 37 chr11 4045716 4046517 -144736955 - L1MA8 LINE L1 0 6355 8 279 150 17 0 chr11 4046795 4046855 -144736617 - LTR54B LTR ERV1 -13 485 425 343 247 12 12 chr11 4047365 4047446 -144736026 - MIR SINE MIR -110 152 72 187 323 31 15 chr11 4047486 4047551 -144735921 - MIR SINE MIR -196 66 1 228 35 0 0 chr11 4048172 4048201 -144735271 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2302 72 0 0 chr11 4048203 4048493 -144734979 - AluY SINE Alu -21 290 1 21 0 0 0 chr11 4048998 4049019 -144734453 + AT_rich Low_complexity Low_complexity 1 21 0 2439 149 4 30 chr11 4049577 4050039 -144733433 + L1MA4 LINE L1 5844 6293 -7 21 0 0 0 chr11 4052497 4052518 -144730954 + AT_rich Low_complexity Low_complexity 1 21 0 2030 109 0 3 chr11 4053193 4053512 -144729960 - AluSx SINE Alu 0 318 1 277 343 0 0 chr11 4054495 4054597 -144728875 - MLT1L LTR MaLR -372 243 142 2207 105 3 0 chr11 4054808 4055114 -144728358 + AluSp SINE Alu 1 307 -6 42 82 0 0 chr11 4055416 4055514 -144727958 + AT_rich Low_complexity Low_complexity 1 98 0 393 197 13 0 chr11 4055534 4055610 -144727862 + Charlie3 DNA MER1_type 1 77 -2633 23 0 0 0 chr11 4056440 4056463 -144727009 + AT_rich Low_complexity Low_complexity 1 23 0 495 301 31 35 chr11 4057010 4057190 -144726282 - L1ME LINE L1 -362 5800 5620 1915 152 27 24 chr11 4057190 4057564 -144725908 + THE1C LTR MaLR 1 375 0 495 301 31 35 chr11 4057564 4057612 -144725860 - L1ME LINE L1 -542 5620 5573 381 268 70 23 chr11 4057615 4057856 -144725616 - L1ME LINE L1 -649 5517 5268 209 60 100 0 chr11 4057886 4057936 -144725536 + (TA)n Simple_repeat Simple_repeat 1 55 0 1021 103 0 0 chr11 4058185 4058321 -144725151 - AluSc SINE Alu -13 296 161 285 286 0 0 chr11 4060160 4060244 -144723228 - L1MC4 LINE L1 -1344 6698 6615 * 290 215 51 0 chr11 4060169 4060248 -144723224 + L1MC4 LINE L1 6614 6696 -1346 21 0 0 0 chr11 4060353 4060374 -144723098 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 4060529 4060559 -144722913 + AT_rich Low_complexity Low_complexity 1 30 0 8054 68 0 8 chr11 4261238 4262370 -144521102 + L1P LINE L1 978 2100 -4046 22 0 0 0 chr11 4262470 4262492 -144520980 + GC_rich Low_complexity Low_complexity 1 22 0 649 222 8 0 chr11 4264010 4264136 -144519336 - Tigger1 DNA MER2_type -2290 128 2 2028 188 91 99 chr11 4264209 4264933 -144518539 + LTR8A LTR ERV1 1 718 -9 346 314 0 8 chr11 4265662 4265783 -144517689 + MER94 DNA DNA 15 134 0 23 0 0 0 chr11 4268915 4268938 -144514534 + AT_rich Low_complexity Low_complexity 1 23 0 34340 38 3 3 chr11 4269066 4274313 -144509159 + L1PA4 LINE L1 912 6153 -2 315 0 0 0 chr11 4276402 4276437 -144507035 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 200 17 0 chr11 4276592 4276652 -144506820 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 250 0 44 chr11 4277292 4277360 -144506112 + L2 LINE L2 3249 3313 0 24 67 0 0 chr11 4277639 4277684 -144505788 + AT_rich Low_complexity Low_complexity 1 45 0 201 357 133 0 chr11 4278516 4278614 -144504858 + L2 LINE L2 3156 3266 -6 1834 110 0 19 chr11 4279110 4279374 -144504098 + AluSq SINE Alu 14 272 -41 349 222 37 0 chr11 4279377 4279512 -144503960 + GA-rich Low_complexity Low_complexity 2 141 0 3870 96 7 4 chr11 4279994 4280544 -144502928 - MER41A LTR ERV1 -2 552 1 655 332 22 0 chr11 4281018 4281241 -144502231 + MIR SINE MIR 35 262 0 192 77 0 0 chr11 4281935 4281961 -144501511 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 4282339 4282363 -144501109 + AT_rich Low_complexity Low_complexity 1 24 0 216 143 0 0 chr11 4283284 4283326 -144500146 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 285 338 152 22 chr11 4283407 4283676 -144499796 - L2 LINE L2 -18 3295 2992 3531 174 52 57 chr11 4284436 4285567 -144497905 - L1MA9 LINE L1 -73 6239 5109 1991 206 30 4 chr11 4285578 4286038 -144497434 + L1MA9 LINE L1 4628 5099 -1047 7592 76 0 6 chr11 4286116 4287164 -144496308 + L1PA3 LINE L1 8 1049 -5097 22977 40 2 0 chr11 4287265 4290946 -144492526 + L1PA3 LINE L1 2493 6182 0 310 321 126 14 chr11 4290995 4291272 -144492200 - L1MCa LINE L1 -4915 1511 1204 495 229 61 79 chr11 4291276 4291490 -144491982 + MSTB1 LTR MaLR 212 421 -11 237 128 0 0 chr11 4292576 4292623 -144490849 + (TC)n Simple_repeat Simple_repeat 1 47 0 722 258 19 0 chr11 4295619 4295774 -144487698 - FRAM SINE Alu -9 167 10 206 264 92 35 chr11 4295785 4295872 -144487600 + MIR3 SINE MIR 113 204 -4 196 223 11 11 chr11 4297156 4297250 -144486222 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 256 30 6 chr11 4297264 4297432 -144486040 + (TA)n Simple_repeat Simple_repeat 1 172 0 234 411 61 17 chr11 4297488 4297668 -144485804 - L2 LINE L2 -188 3084 2897 298 373 128 33 chr11 4298001 4298912 -144484560 - L2 LINE L2 -534 2780 1783 731 323 86 10 chr11 4298919 4299375 -144484097 + L2 LINE L2 2685 3185 -128 554 68 0 0 chr11 4299410 4299483 -144483989 - MADE1 DNA Mariner -7 73 1 25 31 0 0 chr11 4299604 4299636 -144483836 + AT_rich Low_complexity Low_complexity 1 32 0 307 385 24 61 chr11 4299699 4299946 -144483526 - L2 LINE L2 -82 3190 2953 213 382 55 30 chr11 4300214 4300413 -144483059 - L2 LINE L2 -690 2624 2421 255 337 61 32 chr11 4300430 4300676 -144482796 - L2 LINE L2 -1034 2280 2028 262 335 101 59 chr11 4302695 4302982 -144480490 + L2 LINE L2 3012 3310 -3 531 157 22 0 chr11 4303193 4303282 -144480190 + AluJ/FLAM SINE Alu 1 91 -221 1428 199 32 0 chr11 4303283 4303534 -144479938 + AluJo SINE Alu 50 308 -4 2534 59 0 0 chr11 4304078 4304382 -144479090 + AluY SINE Alu 1 304 -7 374 319 59 0 chr11 4304384 4304553 -144478919 + L1ME LINE L1 5485 5663 -458 186 287 202 0 chr11 4304565 4304659 -144478813 + L2 LINE L2 3192 3304 -9 217 224 0 0 chr11 4305032 4305081 -144478391 + (ATG)n Simple_repeat Simple_repeat 3 51 0 462 256 103 39 chr11 4305134 4305337 -144478135 - MIR SINE MIR -44 218 3 240 191 63 0 chr11 4305520 4305583 -144477889 - L1MC1 LINE L1 -1 6332 6266 600 226 40 22 chr11 4305607 4305788 -144477684 - MIR SINE MIR -14 248 63 213 308 0 0 chr11 4306073 4306125 -144477347 + L2 LINE L2 2914 2965 -307 184 353 0 0 chr11 4307168 4307219 -144476253 - MIR SINE MIR -131 131 81 338 325 113 0 chr11 4307432 4307583 -144475889 - MIR SINE MIR -93 169 2 10649 34 9 1 chr11 4307607 4309658 -144473814 + L1PA4 LINE L1 4079 6148 -7 2135 139 35 16 chr11 4310021 4310389 -144473083 + THE1C LTR MaLR 1 375 0 186 346 79 10 chr11 4310847 4310948 -144472524 - MIR SINE MIR -72 190 83 180 200 0 0 chr11 4311211 4311256 -144472216 + A-rich Low_complexity Low_complexity 1 45 0 366 333 18 9 chr11 4312029 4312140 -144471332 + L2 LINE L2 2981 3092 -180 513 230 11 11 chr11 4313348 4313522 -144469950 + CT-rich Low_complexity Low_complexity 1 174 0 1636 195 30 10 chr11 4313558 4313861 -144469611 - AluJb SINE Alu 0 312 4 3069 83 106 176 chr11 4315667 4316592 -144466880 + LTR12 LTR ERV1 1 2428 -10 363 332 93 10 chr11 4316730 4316923 -144466549 - MIR SINE MIR -48 214 6 361 248 28 28 chr11 4316964 4317073 -144466399 - L2 LINE L2 -6 3307 3199 358 357 41 26 chr11 4318430 4318699 -144464773 + L1M4 LINE L1 2466 2738 -3408 299 263 18 9 chr11 4318699 4318813 -144464659 + L1ME3A LINE L1 6049 6163 -7 312 322 59 59 chr11 4318865 4319104 -144464368 - HAL1 LINE L1 -2151 356 118 463 125 0 23 chr11 4319879 4319967 -144463505 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1523 247 146 0 chr11 4320061 4320576 -144462896 + MER90 LTR ERV1 3 592 -22 349 286 79 62 chr11 4320910 4321151 -144462321 + L1ME LINE L1 1075 1319 -5097 563 290 106 24 chr11 4321159 4321761 -144461711 + L1ME LINE L1 1152 2013 -4594 514 186 21 0 chr11 4322010 4322107 -144461365 + Tigger3b DNA MER2_type 1 99 -1132 * 5153 145 42 4 chr11 4322079 4323035 -144460437 + Tigger3b DNA MER2_type 240 1231 0 1419 227 36 74 chr11 4323117 4323642 -144459830 + MLT1D LTR MaLR 1 505 0 41609 40 7 0 chr11 4323854 4330012 -144453460 + L1PA3 LINE L1 3 6198 0 3077 90 2 0 chr11 4330020 4330441 -144453031 + L1PA7 LINE L1 5733 6154 0 1423 210 49 9 chr11 4330927 4331255 -144452217 - MER2 DNA MER2_type 0 344 4 317 335 62 11 chr11 4331261 4331440 -144452032 + MIR SINE MIR 53 240 -22 23 54 0 0 chr11 4332079 4332116 -144451356 + AT_rich Low_complexity Low_complexity 1 37 0 225 267 40 13 chr11 4332959 4333034 -144450438 + MIR SINE MIR 175 251 -11 264 337 192 4 chr11 4333235 4333490 -144449982 - L2 LINE L2 -1210 2104 1802 2502 146 9 16 chr11 4335759 4335891 -144447581 - MER61B LTR ERV1 0 425 294 287 25 25 0 chr11 4335891 4335931 -144447541 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2502 146 9 16 chr11 4335931 4336222 -144447250 - MER61B LTR ERV1 -131 294 5 2196 66 7 10 chr11 4336249 4336550 -144446922 + AluY SINE Alu 1 300 -11 3619 206 36 33 chr11 4337493 4338178 -144445294 + L1MC3 LINE L1 5726 6416 -1369 2953 203 122 6 chr11 4338178 4338883 -144444589 + LTR48 LTR ERV1 1 787 0 3619 206 36 33 chr11 4338883 4339176 -144444296 + L1MC3 LINE L1 6416 6707 -1078 743 243 57 29 chr11 4339379 4339761 -144443711 + Charlie2 DNA MER1_type 2413 2805 -57 991 167 69 0 chr11 4339761 4339965 -144443507 - Tigger1 DNA MER2_type -1 2417 2200 2156 150 26 3 chr11 4340076 4340463 -144443009 - L1MA4A LINE L1 -6 6297 5902 306 267 35 69 chr11 4340486 4340602 -144442870 + MIR SINE MIR 1 112 -150 243 272 37 0 chr11 4340794 4340875 -144442597 + MIR SINE MIR 119 202 -60 239 133 22 0 chr11 4341474 4341519 -144441953 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 22 35 0 0 chr11 4341520 4341549 -144441923 + AT_rich Low_complexity Low_complexity 1 29 0 1330 169 13 30 chr11 4341804 4342041 -144441431 + AluJo SINE Alu 71 303 -9 763 198 93 0 chr11 4342235 4342397 -144441075 + MER5B DNA MER1_type 1 177 -1 270 288 99 11 chr11 4342968 4343059 -144440413 - MIR SINE MIR -102 106 20 347 327 101 12 chr11 4343322 4343490 -144439982 - L3 LINE CR1 -48 1529 1347 359 294 24 76 chr11 4343571 4343782 -144439690 + L2 LINE L2 3114 3313 0 201 403 57 8 chr11 4344092 4344216 -144439256 + L2 LINE L2 3141 3270 -2 240 379 148 6 chr11 4344220 4344389 -144439083 + L3 LINE CR1 1046 1238 -339 370 291 191 24 chr11 4344421 4344631 -144438841 + L3 LINE CR1 1331 1575 -2 198 284 222 37 chr11 4345702 4345864 -144437608 + MIR SINE MIR 1 192 -70 255 103 0 0 chr11 4347269 4347308 -144436164 + (TC)n Simple_repeat Simple_repeat 2 40 0 652 333 6 6 chr11 4347712 4347895 -144435577 - MER5A DNA MER1_type -5 184 2 368 314 9 0 chr11 4348036 4348141 -144435331 - MER5A DNA MER1_type -83 106 1 302 320 66 40 chr11 4350750 4351022 -144432450 + L2 LINE L2 1819 2097 -1217 2805 44 3 0 chr11 4353937 4354279 -144429193 + L1PA5 LINE L1 5804 6146 -8 239 215 38 0 chr11 4354365 4354444 -144429028 + L1MC4 LINE L1 7960 8041 -1 189 359 26 13 chr11 4354751 4354829 -144428643 - L2 LINE L2 -87 3185 3107 479 272 92 29 chr11 4355315 4355562 -144427910 + LTR33A LTR ERVL 161 462 -61 892 281 141 23 chr11 4355576 4356256 -144427216 + LTR50 LTR ERVL 1 791 -4 214 335 53 21 chr11 4357527 4357649 -144425823 + MIR3 SINE MIR 14 138 -103 2130 127 0 0 chr11 4358129 4358420 -144425052 + AluSx SINE Alu 3 293 -19 184 346 103 9 chr11 4358454 4358561 -144424911 - MIR3 SINE MIR -87 121 5 938 50 0 0 chr11 4358800 4358920 -144424552 - L1PA8A LINE L1 -187 5944 5825 373 74 0 0 chr11 4358920 4358970 -144424502 + L1PA8 LINE L1 6117 6170 -2 236 296 54 18 chr11 4359041 4359152 -144424320 + MIR SINE MIR 106 256 -6 2367 63 6 31 chr11 4360243 4360562 -144422910 + AluY SINE Alu 1 311 0 215 324 43 2 chr11 4362746 4362932 -144420540 - MIR SINE MIR -1 261 24 510 181 0 0 chr11 4363552 4363657 -144419815 + GA-rich Low_complexity Low_complexity 2 106 0 729 136 42 8 chr11 4364554 4364672 -144418800 - L1PA15 LINE L1 0 6165 6044 2004 168 23 15 chr11 4364678 4365037 -144418435 + MSTA LTR MaLR 19 355 0 7742 199 20 7 chr11 4365037 4367432 -144416040 - L1PA16 LINE L1 -118 6699 4279 5545 114 25 28 chr11 4367470 4368356 -144415116 + L1PA13 LINE L1 5280 6162 -1 565 256 63 0 chr11 4368352 4368543 -144414929 - L1PA16 LINE L1 -4817 1970 1768 * 1772 257 60 14 chr11 4368859 4369412 -144414060 - L1PA16 LINE L1 -4986 1801 1224 2002 300 43 34 chr11 4369545 4370288 -144413184 - L1PA16 LINE L1 -6037 750 1 6960 21 4 16 chr11 4372589 4373220 -144410252 - L1PA2 LINE L1 -6 6149 5529 2798 16 0 0 chr11 4373220 4373526 -144409946 + AluYa5 SINE Alu 1 306 -5 6960 21 4 16 chr11 4373526 4373712 -144409760 - L1PA2 LINE L1 -626 5529 5342 6122 29 7 0 chr11 4373710 4374440 -144409032 + L1PA2 LINE L1 4598 5332 -814 * 43344 36 24 1 chr11 4377118 4382841 -144400631 - L1PA3 LINE L1 -298 5857 1 1316 204 23 4 chr11 4383163 4383428 -144400044 - L1MA10 LINE L1 -68 6266 5997 494 309 7 20 chr11 4383510 4383662 -144399810 - MIR SINE MIR -85 177 28 303 296 191 16 chr11 4383955 4384144 -144399328 + MIR SINE MIR 41 262 0 936 28 37 0 chr11 4384590 4384729 -144398743 + L1PA2 LINE L1 6030 6172 0 252 221 15 15 chr11 4384746 4384814 -144398658 + A-rich Low_complexity Low_complexity 5 72 0 319 256 163 47 chr11 4385813 4385942 -144397530 - MIR SINE MIR -59 203 60 1236 245 96 22 chr11 4386713 4386988 -144396484 + L2 LINE L2 2752 3005 -308 2069 160 28 50 chr11 4386988 4387387 -144396085 + MLT1B LTR MaLR 1 390 0 1236 245 96 22 chr11 4387387 4387622 -144395850 + L2 LINE L2 3005 3302 -11 281 384 16 0 chr11 4388267 4388392 -144395080 + MIR3 SINE MIR 11 137 -71 223 295 54 36 chr11 4388536 4388648 -144394824 - MIR SINE MIR -83 179 66 300 288 27 63 chr11 4388682 4388793 -144394679 - MIR SINE MIR -81 127 21 759 246 121 0 chr11 4391246 4391461 -144392011 + MIR SINE MIR 10 250 -12 22 0 0 0 chr11 4392090 4392112 -144391360 + AT_rich Low_complexity Low_complexity 1 22 0 244 158 26 0 chr11 4392358 4392396 -144391076 + L2 LINE L2 3213 3251 -21 21 36 0 0 chr11 4393615 4393643 -144389829 + AT_rich Low_complexity Low_complexity 1 28 0 1902 136 8 0 chr11 4393858 4394122 -144389350 - AluSq SINE Alu -47 266 1 210 308 0 96 chr11 4394249 4394353 -144389119 + MIR3 SINE MIR 10 103 -105 435 289 123 24 chr11 4395795 4396006 -144387466 + MIR SINE MIR 28 259 -3 708 281 0 6 chr11 4396188 4396359 -144387113 + L1M3c LINE L1 1357 1526 -5970 * 1821 234 79 24 chr11 4396354 4397116 -144386356 + L1M3c LINE L1 2943 3752 -3813 2029 194 29 22 chr11 4397125 4397538 -144385934 - MER88 LTR ERVL -2 462 47 207 0 0 0 chr11 4398230 4398253 -144385219 + (A)n Simple_repeat Simple_repeat 1 23 0 1426 92 67 0 chr11 4398416 4398611 -144384861 + AluSg/x SINE Alu 87 294 -18 1162 203 14 5 chr11 4398912 4399134 -144384338 + HERVL74 LTR ERVL 1869 2092 -3593 4558 206 11 38 chr11 4399137 4400083 -144383389 + HERVL74 LTR ERVL 2421 3340 -2345 983 177 0 12 chr11 4400065 4400229 -144383243 + HERVL74 LTR ERVL 3479 3640 -2045 * 548 324 131 35 chr11 4400533 4401043 -144382429 + L2 LINE L2 2133 2691 -623 584 254 97 91 chr11 4401612 4402132 -144381340 + MER65B LTR ERV1 1 445 0 312 346 40 25 chr11 4402615 4402817 -144380655 + L2 LINE L2 2751 2955 -359 1862 52 9 4 chr11 4402958 4403188 -144380284 - L1PA6 LINE L1 -7 6147 5917 513 309 85 50 chr11 4403188 4403719 -144379753 + L2 LINE L2 2465 3094 -219 671 266 34 34 chr11 4403789 4403996 -144379476 + MIR SINE MIR 20 226 -36 368 341 24 8 chr11 4404032 4404155 -144379317 + L2 LINE L2 3139 3263 -9 273 255 108 0 chr11 4404172 4404274 -144379198 + L1ME4a LINE L1 5840 5952 -169 706 284 87 18 chr11 4405053 4405282 -144378190 + MIR SINE MIR 13 257 -5 2453 103 39 25 chr11 4406669 4407028 -144376444 - THE1B LTR MaLR 0 364 1 275 360 55 55 chr11 4407597 4407978 -144375494 + L2 LINE L2 2910 3290 -23 2122 286 143 52 chr11 4411464 4412610 -144370862 - L2 LINE L2 -767 2547 1507 3534 77 41 0 chr11 4412610 4413052 -144370420 - LTR46 LTR ERV1 0 460 1 2122 286 143 52 chr11 4413052 4413076 -144370396 - L2 LINE L2 -1807 1507 1487 845 227 32 16 chr11 4413076 4413261 -144370211 + MER5A DNA MER1_type 2 189 0 2122 286 143 52 chr11 4413261 4413423 -144370049 - L2 LINE L2 -1827 1487 1092 587 351 108 6 chr11 4413467 4413820 -144369652 - L2 LINE L2 -2810 504 116 402 235 73 29 chr11 4414020 4414156 -144369316 + L2 LINE L2 2507 2648 -666 511 246 81 0 chr11 4420134 4420273 -144363199 - MIR SINE MIR -49 213 63 357 257 140 29 chr11 4420989 4421160 -144362312 - MIR SINE MIR -44 218 29 2151 130 0 3 chr11 4421989 4422289 -144361183 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr11 4422723 4422745 -144360727 + (TA)n Simple_repeat Simple_repeat 2 23 0 2266 127 0 0 chr11 4422745 4423052 -144360420 - AluSx SINE Alu -5 307 1 329 294 29 52 chr11 4424391 4424527 -144358945 - MIR SINE MIR -109 153 21 577 233 109 57 chr11 4424725 4424885 -144358587 + MIR SINE MIR 25 198 -64 560 14 14 0 chr11 4424885 4424954 -144358518 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 577 233 109 57 chr11 4424954 4424986 -144358486 + MIR SINE MIR 198 227 -35 475 344 54 13 chr11 4429086 4429310 -144354162 - MIR SINE MIR -10 252 20 1366 77 33 0 chr11 4429826 4430008 -144353464 + L1PA13 LINE L1 5975 6162 -1 2353 87 0 22 chr11 4430486 4430797 -144352675 + AluSg SINE Alu 1 304 -6 193 308 0 15 chr11 4431616 4431681 -144351791 - MIR3 SINE MIR -139 69 6 3586 80 14 12 chr11 4431708 4432193 -144351279 - LTR15 LTR ERV1 -7 486 1 858 249 12 70 chr11 4432858 4433115 -144350357 + MIR SINE MIR 21 262 0 2190 128 3 0 chr11 4433209 4433513 -144349959 - AluSx SINE Alu -7 305 1 228 322 96 17 chr11 4434700 4434815 -144348657 + MIR SINE MIR 90 213 -49 27 29 0 0 chr11 4436160 4436194 -144347278 + AT_rich Low_complexity Low_complexity 1 34 0 2253 119 3 0 chr11 4436351 4436662 -144346810 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 4436777 4436805 -144346667 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 4436924 4436956 -144346516 + AT_rich Low_complexity Low_complexity 1 32 0 8866 221 23 13 chr11 4437330 4438288 -144345184 - L1P4 LINE L1 -735 5431 4485 2382 76 0 22 chr11 4438288 4438603 -144344869 - AluY SINE Alu -3 308 1 8866 221 23 13 chr11 4438603 4438656 -144344816 - L1P4 LINE L1 -1681 4485 4434 324 70 0 0 chr11 4438656 4438699 -144344773 + (TG)n Simple_repeat Simple_repeat 1 43 0 8866 221 23 13 chr11 4438699 4439915 -144343557 - L1P4 LINE L1 -1732 4434 3178 1950 68 0 4 chr11 4439985 4440220 -144343252 + AluY SINE Alu 67 300 -11 1281 179 74 21 chr11 4440849 4441134 -144342338 - L1 LINE L1 -2147 3999 3700 * 2868 185 12 0 chr11 4441129 4441691 -144341781 + L1 LINE L1 3985 4553 -1593 612 149 0 0 chr11 4441693 4441787 -144341685 + L1PB4 LINE L1 6063 6156 0 1863 168 35 23 chr11 4442315 4442709 -144340763 + L1MA7 LINE L1 5889 6287 -4 388 272 24 16 chr11 4442852 4442977 -144340495 + MIR SINE MIR 20 145 -63 345 257 40 20 chr11 4442995 4443147 -144340325 + L2 LINE L2 2804 2958 -314 28 29 0 0 chr11 4443188 4443223 -144340249 + AT_rich Low_complexity Low_complexity 1 35 0 337 264 132 35 chr11 4443232 4443376 -144340096 + L2 LINE L2 3156 3313 0 5426 78 4 13 chr11 4443378 4444083 -144339389 - L1PA13 LINE L1 0 6163 5465 300 287 25 25 chr11 4446381 4446503 -144336969 + MER94 DNA DNA 1 122 -12 253 243 36 110 chr11 4447560 4447717 -144335755 + L1MC5 LINE L1 7402 7526 -435 2398 76 0 0 chr11 4447717 4448018 -144335454 - AluSx SINE Alu -11 301 1 253 243 36 110 chr11 4448018 4448169 -144335303 + L1MC5 LINE L1 7526 7687 -274 435 278 29 107 chr11 4448197 4448416 -144335056 + MIR SINE MIR 1 195 -67 2225 96 3 7 chr11 4448416 4448707 -144334765 - AluSg SINE Alu -20 290 1 435 278 29 107 chr11 4448707 4448768 -144334704 + MIR SINE MIR 195 259 -3 275 286 206 0 chr11 4449583 4449709 -144333763 + MIR SINE MIR 47 198 -64 1446 172 0 0 chr11 4449834 4450061 -144333411 - L1PB3 LINE L1 -7 6147 5921 209 203 0 68 chr11 4450742 4450803 -144332669 + T-rich Low_complexity Low_complexity 4 61 -11 1462 195 120 0 chr11 4450803 4451111 -144332361 + MER7A DNA MER2_type 3 345 -1 209 203 0 68 chr11 4451111 4451123 -144332349 + T-rich Low_complexity Low_complexity 61 72 0 237 300 9 91 chr11 4451924 4452034 -144331438 - L2 LINE L2 0 3313 3213 315 267 182 40 chr11 4453749 4453925 -144329547 - MIR SINE MIR -4 258 58 486 270 122 0 chr11 4454430 4454578 -144328894 - MIR SINE MIR -69 193 28 274 372 78 52 chr11 4455015 4455359 -144328113 - L2 LINE L2 -1 3271 2919 247 330 57 0 chr11 4455450 4455538 -144327934 - L2 LINE L2 -44 3228 3136 25 31 0 0 chr11 4455699 4455731 -144327741 + AT_rich Low_complexity Low_complexity 1 32 0 365 300 62 31 chr11 4455785 4455945 -144327527 - MIR SINE MIR -97 165 1 207 383 12 0 chr11 4455952 4456033 -144327439 - L2 LINE L2 -285 2987 2906 198 0 0 0 chr11 4456063 4456085 -144327387 + (TGG)n Simple_repeat Simple_repeat 1 22 0 389 167 13 0 chr11 4456131 4456209 -144327263 + GA-rich Low_complexity Low_complexity 2 80 0 501 47 0 0 chr11 4456210 4456274 -144327198 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 440 297 59 18 chr11 4456489 4456711 -144326761 + MIR SINE MIR 1 231 -31 322 361 12 0 chr11 4458271 4458440 -144325032 + MER5B DNA MER1_type 5 175 -3 522 317 119 39 chr11 4458685 4459205 -144324267 + L2 LINE L2 2232 2793 -521 181 242 48 48 chr11 4459461 4459523 -144323949 + MIR3 SINE MIR 3 64 -144 2275 112 0 0 chr11 4459546 4459842 -144323630 + AluSg SINE Alu 1 296 -14 212 340 128 0 chr11 4459954 4460048 -144323424 + MIR SINE MIR 48 153 -109 184 283 250 0 chr11 4461383 4461475 -144321997 - MIR SINE MIR -60 148 34 418 266 55 9 chr11 4461583 4461692 -144321780 - MER81 DNA DNA 0 114 1 248 346 40 0 chr11 4461694 4461795 -144321677 + MIR SINE MIR 38 142 -120 240 86 0 0 chr11 4462536 4462571 -144320901 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 327 107 0 chr11 4462778 4462928 -144320544 - MIR SINE MIR -3 259 94 448 261 12 8 chr11 4464004 4464135 -144319337 + L2 LINE L2 2840 2976 -298 24 0 0 0 chr11 4464185 4464209 -144319263 + AT_rich Low_complexity Low_complexity 1 24 0 226 347 32 32 chr11 4464343 4464467 -144319005 + L2 LINE L2 3175 3298 -15 1280 187 129 16 chr11 4466407 4466717 -144316755 + MER7A DNA MER2_type 3 345 -1 1119 219 59 22 chr11 4467279 4467599 -144315873 - L1M4c LINE L1 -4892 1492 1161 * 2456 94 1 80 chr11 4467595 4467876 -144315596 - L1M1 LINE L1 -398 5756 5495 702 60 0 0 chr11 4467876 4467960 -144315512 - AluSg/x SINE Alu -12 297 214 2456 94 1 80 chr11 4467960 4468116 -144315356 - L1M1 LINE L1 -659 5495 5328 2923 104 0 0 chr11 4468123 4468508 -144314964 - L1P3 LINE L1 -6055 406 22 748 69 0 10 chr11 4468764 4468865 -144314607 - AluSg/x SINE Alu -1 311 212 2279 86 0 10 chr11 4469565 4469857 -144313615 + AluSc SINE Alu 1 289 -20 360 89 143 0 chr11 4470082 4470138 -144313334 - AluSg/x SINE Alu -20 280 217 193 313 83 10 chr11 4470658 4470754 -144312718 - L2 LINE L2 -18 3295 3193 284 274 167 43 chr11 4470809 4470995 -144312477 + L2 LINE L2 2151 2359 -955 2442 48 0 7 chr11 4471557 4471852 -144311620 - AluY SINE Alu -18 293 1 1120 174 24 14 chr11 4472708 4472920 -144310552 + MER20 DNA MER1_type 1 214 -5 217 178 0 44 chr11 4473629 4473674 -144309798 + C-rich Low_complexity Low_complexity 2 44 0 727 265 38 9 chr11 4474202 4474413 -144309059 + MIR SINE MIR 14 230 -32 278 264 19 55 chr11 4474976 4475066 -144308406 - MER5A DNA MER1_type 0 189 90 1132 186 115 0 chr11 4475556 4475835 -144307637 - MER33 DNA MER1_type -13 311 1 1290 235 81 40 chr11 4475902 4476332 -144307140 - L1ME1 LINE L1 -5 6161 5714 2222 75 7 0 chr11 4476478 4476801 -144306671 - AluY SINE Alu 0 325 1 276 304 0 0 chr11 4476801 4476893 -144306579 - L1M4 LINE L1 -1904 4242 4151 284 243 14 0 chr11 4476895 4476969 -144306503 - L1M4 LINE L1 -2120 4026 3952 * 792 236 12 13 chr11 4476954 4477174 -144306298 - L1M2 LINE L1 -4324 2059 1471 2136 88 3 11 chr11 4477221 4477505 -144305967 + AluSp SINE Alu 22 303 -10 209 401 6 0 chr11 4478173 4478340 -144305132 + (TGG)n Simple_repeat Simple_repeat 1 168 0 282 184 158 53 chr11 4478993 4479069 -144304403 + MER96 DNA MER1_type? 1 84 -91 296 294 76 21 chr11 4480446 4480684 -144302788 - L1ME4a LINE L1 -17 6104 5854 4609 108 75 11 chr11 4480777 4481506 -144301966 - L1PA13 LINE L1 0 6163 5388 2182 54 65 7 chr11 4481702 4481980 -144301492 + AluY SINE Alu 2 295 -16 559 221 67 36 chr11 4482472 4482667 -144300805 + LTR37A LTR ERV1 226 426 0 2787 161 13 23 chr11 4482723 4483332 -144300140 + pTR5 LTR ERV1 743 1345 -1093 3225 128 234 53 chr11 4483347 4484043 -144299429 + LTR12 LTR ERV1 5 826 0 2535 127 148 7 chr11 4484276 4484392 -144299080 - LTR45B LTR ERV1 0 489 391 2315 81 3 3 chr11 4484392 4484689 -144298783 + AluSp SINE Alu 1 297 -16 2535 127 148 7 chr11 4484689 4484999 -144298473 - LTR45B LTR ERV1 -98 391 3 950 251 64 20 chr11 4485303 4485554 -144297918 - MIR SINE MIR 0 262 1 308 300 0 47 chr11 4485591 4485660 -144297812 + GA-rich Low_complexity Low_complexity 2 73 -71 1945 175 7 0 chr11 4485660 4485968 -144297504 + AluJo SINE Alu 1 310 -2 308 300 0 47 chr11 4485968 4486048 -144297424 + GA-rich Low_complexity Low_complexity 73 144 0 1011 196 44 22 chr11 4486941 4487170 -144296302 - L1ME4a LINE L1 -347 5819 5586 1529 182 23 20 chr11 4487428 4487730 -144295742 - AluJb SINE Alu -7 305 3 1942 68 129 0 chr11 4488845 4489108 -144294364 - AluSc SINE Alu -12 297 1 1624 117 0 35 chr11 4489740 4490022 -144293450 - AluY SINE Alu -39 272 1 224 359 165 0 chr11 4490493 4490699 -144292773 + MIR SINE MIR 19 258 -4 185 258 81 16 chr11 4491603 4491665 -144291807 + MIR SINE MIR 49 114 -148 2380 87 0 0 chr11 4491795 4492093 -144291379 + AluSx SINE Alu 1 298 -14 617 319 178 9 chr11 4492321 4492478 -144290994 - L2 LINE L2 -2 3311 3182 2175 82 0 11 chr11 4492478 4492757 -144290715 + AluY SINE Alu 1 276 -35 617 319 178 9 chr11 4492757 4492947 -144290525 - L2 LINE L2 -131 3182 2905 2233 127 0 0 chr11 4492993 4493293 -144290179 + AluSx SINE Alu 3 302 -10 1842 119 37 0 chr11 4494325 4494482 -144288990 - AluSx SINE Alu -22 290 117 240 35 0 0 chr11 4494482 4494511 -144288961 + (TG)n Simple_repeat Simple_repeat 2 30 0 1842 119 37 0 chr11 4494511 4494622 -144288850 - AluSx SINE Alu -195 117 12 22 70 0 0 chr11 4495621 4495664 -144287808 + AT_rich Low_complexity Low_complexity 1 43 0 2262 117 0 0 chr11 4498049 4498356 -144285116 + AluSx SINE Alu 1 307 -5 471 279 80 40 chr11 4499010 4499236 -144284236 - LTR68 LTR ERV1 -505 235 1 440 269 119 36 chr11 4499631 4499824 -144283648 + MER63A DNA MER1_type 1 209 -1 3116 197 66 8 chr11 4500036 4500690 -144282782 - L1MB5 LINE L1 -8 6166 5475 204 89 0 54 chr11 4500690 4500746 -144282726 + (TA)n Simple_repeat Simple_repeat 2 54 0 35 63 0 0 chr11 4501155 4501218 -144282254 + AT_rich Low_complexity Low_complexity 1 63 0 196 393 60 0 chr11 4501291 4501474 -144281998 - L2 LINE L2 -928 2386 2193 245 203 31 16 chr11 4501586 4501650 -144281822 - LTR54 LTR ERV1 -47 463 399 3630 220 40 21 chr11 4503749 4504780 -144278692 + L1MB7 LINE L1 5115 6168 -16 253 123 18 18 chr11 4507727 4507784 -144275688 + GA-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 4507784 4507810 -144275662 + (TG)n Simple_repeat Simple_repeat 2 27 0 190 210 0 49 chr11 4508529 4508610 -144274862 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1985 113 0 15 chr11 4509005 4509279 -144274193 + AluSx SINE Alu 27 296 -16 724 201 152 0 chr11 4509540 4509704 -144273768 - MER5A DNA MER1_type 0 189 1 337 269 30 82 chr11 4509842 4509865 -144273607 - MIR SINE MIR -63 145 122 2541 40 0 3 chr11 4509865 4510163 -144273309 + AluY SINE Alu 15 311 0 337 269 30 82 chr11 4510163 4510273 -144273199 - MIR SINE MIR -86 122 19 2424 78 0 0 chr11 4510597 4510891 -144272581 - AluSx SINE Alu -18 294 1 656 28 0 0 chr11 4510892 4510963 -144272509 - AluSg/x SINE Alu -170 140 70 21 57 0 0 chr11 4512974 4513009 -144270463 + AT_rich Low_complexity Low_complexity 1 35 0 567 248 75 37 chr11 4513854 4513936 -144269536 + MIR SINE MIR 41 118 -144 1753 190 3 0 chr11 4513936 4514241 -144269231 - AluSx SINE Alu -5 307 2 567 248 75 37 chr11 4514241 4514372 -144269100 + MIR SINE MIR 118 262 0 24 32 0 0 chr11 4514611 4514642 -144268830 + AT_rich Low_complexity Low_complexity 1 31 0 3979 49 0 0 chr11 4514642 4515131 -144268341 - L1PA5 LINE L1 0 6154 5666 359 406 32 5 chr11 4515157 4515376 -144268096 + L2 LINE L2 2869 3093 -220 746 269 103 17 chr11 4515502 4515886 -144267586 + L1MC/D LINE L1 5317 5744 -625 382 233 39 39 chr11 4516029 4516158 -144267314 + MIR SINE MIR 77 205 -57 291 233 69 74 chr11 4516175 4516364 -144267108 - L1ME LINE L1 -364 5757 5570 26 74 0 0 chr11 4516537 4516591 -144266881 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr11 4516823 4516852 -144266620 + AT_rich Low_complexity Low_complexity 1 29 0 1165 201 107 105 chr11 4517185 4517736 -144265736 - MER34B LTR ERV1 -2 563 12 1943 184 5 29 chr11 4517741 4518115 -144265357 - MLT1A1 LTR MaLR 0 365 1 2131 119 0 3 chr11 4518163 4518466 -144265006 - AluSq SINE Alu -11 302 1 823 93 0 0 chr11 4518548 4518656 -144264816 - AluSg/x SINE Alu -2 307 200 27 62 0 0 chr11 4568657 4568705 -144214767 + AT_rich Low_complexity Low_complexity 1 48 0 6953 53 9 30 chr11 4568705 4569522 -144213950 - L1PA7 LINE L1 -4 6150 5349 2213 111 7 3 chr11 4569522 4569820 -144213652 + AluSp SINE Alu 1 299 -14 6953 53 9 30 chr11 4569820 4570182 -144213290 - L1PA7 LINE L1 -805 5349 4981 947 241 38 70 chr11 4571119 4571630 -144211842 - PABL_B LTR ERV1 -21 646 10 3052 232 34 53 chr11 4571842 4572864 -144210608 + L1MB5 LINE L1 3156 4157 -1989 1362 124 16 31 chr11 4572864 4573121 -144210351 + L1MA3 LINE L1 6050 6302 -3 3052 232 34 53 chr11 4573121 4573198 -144210274 + L1MB5 LINE L1 4157 4234 -1912 2345 107 0 0 chr11 4573247 4573556 -144209916 - AluY SINE Alu -2 309 1 1806 213 45 28 chr11 4574015 4574523 -144208949 - L1PB4 LINE L1 -95 6061 5545 23 33 0 0 chr11 4575308 4575338 -144208134 + AT_rich Low_complexity Low_complexity 1 30 0 267 191 52 26 chr11 4577129 4577244 -144206228 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 22 56 0 0 chr11 4577511 4577547 -144205925 + AT_rich Low_complexity Low_complexity 1 36 0 286 317 24 43 chr11 4578103 4578267 -144205205 + L2 LINE L2 1873 2033 -1281 278 276 0 13 chr11 4578310 4578386 -144205086 + L2 LINE L2 2164 2238 -1076 3313 234 23 26 chr11 4578813 4579810 -144203662 + L1MB5 LINE L1 4308 5301 -845 293 256 95 31 chr11 4579893 4580131 -144203341 + L1MC/D LINE L1 5525 5793 -377 1206 269 25 47 chr11 4580172 4580485 -144202987 + L1M4 LINE L1 2521 2839 -3307 220 20 59 39 chr11 4580485 4580536 -144202936 + (TA)n Simple_repeat Simple_repeat 1 52 0 1206 269 25 47 chr11 4580536 4580650 -144202822 + L1M4 LINE L1 2839 2954 -3192 1872 127 13 43 chr11 4580650 4580949 -144202523 + AluSx SINE Alu 2 291 -21 1206 269 25 47 chr11 4580949 4581249 -144202223 + L1M4 LINE L1 2954 3233 -2913 466 336 34 10 chr11 4581335 4581543 -144201929 + MIR SINE MIR 50 262 0 189 0 0 0 chr11 4582106 4582127 -144201345 + (A)n Simple_repeat Simple_repeat 1 21 0 613 174 16 5 chr11 4583787 4583973 -144199499 + L1MA4 LINE L1 6033 6297 -3 24 32 0 0 chr11 4584027 4584058 -144199414 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 4584408 4584436 -144199036 + AT_rich Low_complexity Low_complexity 1 28 0 2139 104 3 7 chr11 4584550 4584839 -144198633 - AluSc SINE Alu -21 288 1 192 187 165 44 chr11 4584937 4585028 -144198444 - L2 LINE L2 -4 3309 3208 21 0 0 0 chr11 4585281 4585302 -144198170 + AT_rich Low_complexity Low_complexity 1 21 0 203 321 71 9 chr11 4586097 4586209 -144197263 + MIR SINE MIR 137 255 -7 297 243 14 0 chr11 4587540 4587614 -144195858 - L1M4 LINE L1 -1983 4399 4325 * 308 229 16 16 chr11 4587612 4587734 -144195738 - L1M4 LINE L1 -3951 2433 2312 890 217 46 132 chr11 4587739 4588216 -144195256 + L1MB5 LINE L1 5326 5753 -431 2362 172 36 5 chr11 4588216 4588659 -144194813 - MSTB2 LTR MaLR 0 457 1 890 217 46 132 chr11 4588659 4588721 -144194751 + L1MB5 LINE L1 5753 5819 -365 558 220 16 44 chr11 4588955 4589137 -144194335 + L1MB5 LINE L1 5815 5991 -183 2403 82 7 0 chr11 4589315 4589620 -144193852 + AluSp SINE Alu 1 307 -6 2178 104 17 0 chr11 4589948 4590245 -144193227 + AluSq SINE Alu 1 302 -11 1105 176 13 63 chr11 4590387 4590626 -144192846 - AluJo SINE Alu 0 312 86 1931 129 26 26 chr11 4591197 4591507 -144191965 + AluSg SINE Alu 1 310 0 180 0 0 0 chr11 4592276 4592296 -144191176 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 296 282 46 8 chr11 4592356 4592497 -144190975 - MIR SINE MIR -64 144 13 21 0 0 0 chr11 4592588 4592609 -144190863 + AT_rich Low_complexity Low_complexity 1 21 0 255 352 37 0 chr11 4594355 4594463 -144189009 + MIR SINE MIR 18 129 -133 2354 103 3 0 chr11 4594464 4594776 -144188696 - AluSq SINE Alu 0 313 1 1548 111 0 8 chr11 4594823 4595067 -144188405 + L1MA6 LINE L1 6059 6300 0 28 29 0 0 chr11 4595407 4595442 -144188030 + AT_rich Low_complexity Low_complexity 1 35 0 1715 155 22 4 chr11 4595535 4595848 -144187624 - AluJb SINE Alu 0 318 1 381 22 0 0 chr11 4597608 4597654 -144185818 + (T)n Simple_repeat Simple_repeat 1 46 0 34 24 0 0 chr11 4597658 4597699 -144185773 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 4597933 4597954 -144185518 + AT_rich Low_complexity Low_complexity 1 21 0 865 180 15 34 chr11 4598083 4598289 -144185183 + L1MB3 LINE L1 5918 6119 -64 2315 66 3 0 chr11 4598734 4599023 -144184449 - AluY SINE Alu -21 290 1 822 295 102 24 chr11 4599264 4599509 -144183963 + L1ME LINE L1 48 273 -5797 2325 89 0 0 chr11 4599509 4599802 -144183670 + AluSg SINE Alu 1 293 -17 822 295 102 24 chr11 4599802 4600058 -144183414 + L1ME LINE L1 273 588 -5482 1081 159 15 5 chr11 4600431 4600626 -144182846 - LTR1 LTR ERV1 0 785 589 2542 124 90 5 chr11 4600626 4601071 -144182401 - L1PA8 LINE L1 -4 6168 5686 359 245 14 35 chr11 4601101 4601244 -144182228 + L1ME LINE L1 49 188 -5882 2353 181 66 34 chr11 4601246 4601803 -144181669 - LTR1 LTR ERV1 -203 582 8 2246 102 3 16 chr11 4603346 4603660 -144179812 - AluSx SINE Alu 0 312 3 502 271 82 47 chr11 4603707 4604132 -144179340 - L1M4 LINE L1 -2042 4104 3665 1347 186 42 0 chr11 4604643 4604950 -144178522 + MER33 DNA MER1_type 5 324 0 2065 206 93 8 chr11 4606814 4607479 -144175993 - L1M4 LINE L1 -3108 3038 2317 2301 95 3 13 chr11 4607487 4607802 -144175670 - AluSx SINE Alu 0 312 1 2477 25 0 59 chr11 4607837 4608160 -144175312 - AluY SINE Alu -7 304 1 379 152 3 2 chr11 4608175 4608244 -144175228 + AluSp/q SINE Alu 236 296 -7 24 0 0 0 chr11 4608337 4608361 -144175111 + AT_rich Low_complexity Low_complexity 1 24 0 2214 110 10 0 chr11 4608647 4608946 -144174526 - AluSq SINE Alu -11 302 1 24 0 0 0 chr11 4608946 4608970 -144174502 + AT_rich Low_complexity Low_complexity 1 24 0 566 330 13 51 chr11 4609344 4609396 -144174076 - MIR SINE MIR -23 239 187 2314 96 0 3 chr11 4609396 4609699 -144173773 - AluSq SINE Alu -11 302 1 566 330 13 51 chr11 4609699 4609882 -144173590 - MIR SINE MIR -75 187 13 658 254 30 6 chr11 4609914 4610079 -144173393 + MER58A DNA MER1_type 24 192 -32 1689 74 0 0 chr11 4610079 4610304 -144173168 + AluSg/x SINE Alu 83 307 0 969 237 47 122 chr11 4610959 4611264 -144172208 - L1MCa LINE L1 -5571 651 325 2361 85 16 0 chr11 4611264 4611571 -144171901 - AluSx SINE Alu 0 312 1 969 237 47 122 chr11 4611571 4611739 -144171733 - L1MCa LINE L1 -5897 325 140 2149 87 0 75 chr11 4611739 4612072 -144171400 - AluSg SINE Alu -2 308 1 969 237 47 122 chr11 4612072 4612164 -144171308 - L1MCa LINE L1 -6082 140 43 621 131 0 10 chr11 4613185 4613284 -144170188 + MER4A LTR ERV1 1 98 -566 1597 150 12 22 chr11 4613284 4613631 -144169841 + MER4A LTR ERV1 261 662 -2 1156 126 26 21 chr11 4613718 4613735 -144169737 + AluSp SINE Alu 120 135 -178 2322 100 0 0 chr11 4613735 4614044 -144169428 + AluY SINE Alu 1 309 -2 1156 126 26 21 chr11 4614044 4614217 -144169255 + AluSp SINE Alu 135 311 -2 1396 110 71 21 chr11 4614344 4614669 -144168803 - MER4A LTR ERV1 0 651 252 682 117 8 16 chr11 4614691 4614819 -144168653 - MER4A LTR ERV1 -537 127 1 393 69 0 235 chr11 4614874 4614927 -144168545 + MADE1 DNA Mariner 1 20 -60 2303 84 0 43 chr11 4614927 4615250 -144168222 - AluSg SINE Alu -1 309 1 289 117 14 0 chr11 4615250 4615300 -144168172 + MADE1 DNA Mariner 37 80 0 393 69 0 235 chr11 4615250 4615298 -144168174 + MADE1 DNA Mariner 20 78 -2 220 292 0 0 chr11 4615750 4615798 -144167674 + MER5B DNA MER1_type 2 49 -129 235 263 0 0 chr11 4615800 4615813 -144167659 - L1MA10 LINE L1 -2 6332 6320 443 254 124 6 chr11 4615813 4615990 -144167482 - L1ME1 LINE L1 -6 6160 5963 1017 190 46 32 chr11 4616165 4616381 -144167091 - MER20 DNA MER1_type 0 219 1 195 42 0 0 chr11 4616947 4616971 -144166501 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 259 86 91 chr11 4618119 4618170 -144165302 - L2 LINE L2 -412 2902 2852 2110 121 0 7 chr11 4618170 4618468 -144165004 + AluSq SINE Alu 3 298 -15 351 259 86 91 chr11 4618468 4618670 -144164802 - L2 LINE L2 -462 2852 2649 2180 93 7 14 chr11 4618670 4618960 -144164512 + AluSq SINE Alu 5 292 -21 351 259 86 91 chr11 4618960 4619056 -144164416 - L2 LINE L2 -665 2649 2554 1635 225 29 44 chr11 4620256 4620565 -144162907 - MLT1C LTR MaLR 0 467 164 2386 98 0 0 chr11 4620565 4620862 -144162610 + AluSx SINE Alu 1 297 -15 1635 225 29 44 chr11 4620862 4620961 -144162511 - MLT1C LTR MaLR -303 164 65 2427 62 3 0 chr11 4621272 4621576 -144161896 - AluY SINE Alu -6 305 1 373 337 143 10 chr11 4623367 4623667 -144159805 - L2 LINE L2 -50 3263 2924 718 130 35 0 chr11 4624294 4624409 -144159063 - AluSg1 SINE Alu -189 120 2 494 62 0 16 chr11 4624437 4624501 -144158971 - LTR7 LTR ERV1 -42 408 346 351 0 0 0 chr11 4625722 4625764 -144157708 + (CA)n Simple_repeat Simple_repeat 1 81 0 351 0 0 0 chr11 4625764 4625803 -144157669 + (CA)n Simple_repeat Simple_repeat 2 40 0 2328 80 3 7 chr11 4626526 4626827 -144156645 - AluY SINE Alu -11 300 1 1581 223 41 8 chr11 4627110 4627478 -144155994 + L1MB7 LINE L1 5447 5826 -358 7723 24 0 76 chr11 4627582 4629242 -144154230 + L1PA3 LINE L1 4573 6155 0 1858 216 31 52 chr11 4629336 4629879 -144153593 - L1MA9 LINE L1 -30 6282 5751 39 22 0 0 chr11 4630654 4630700 -144152772 + AT_rich Low_complexity Low_complexity 1 46 0 207 114 0 0 chr11 4632337 4632372 -144151100 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 4632622 4632644 -144150828 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr11 4633431 4633458 -144150014 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 2982 41 0 3 chr11 4633459 4633797 -144149675 - L1PA3 LINE L1 -3 6152 5816 615 251 53 112 chr11 4634358 4634732 -144148740 - MLT2C1 LTR ERVL -2 395 44 * 621 196 67 45 chr11 4634568 4634747 -144148725 - MLT1E3 LTR MaLR -393 231 49 428 316 22 7 chr11 4634752 4634891 -144148581 - MLT2F LTR ERVL -522 141 1 617 324 16 5 chr11 4635215 4635400 -144148072 + MER5A DNA MER1_type 3 189 0 228 200 0 0 chr11 4637760 4637820 -144145652 + (TATG)n Simple_repeat Simple_repeat 2 61 0 304 237 69 92 chr11 4637891 4638022 -144145450 - MIR SINE MIR -13 249 122 1738 60 9 0 chr11 4640552 4640768 -144142704 - L1PA5 LINE L1 -5 6149 5932 2383 81 7 3 chr11 4640774 4641081 -144142391 - AluY SINE Alu -3 308 1 2499 70 0 0 chr11 4641851 4642151 -144141321 - AluY SINE Alu -11 300 1 456 111 0 14 chr11 4643302 4643374 -144140098 - L1P LINE L1 -1268 4878 4808 2299 85 3 10 chr11 4643985 4644290 -144139182 - AluSq SINE Alu -10 303 1 3932 213 24 41 chr11 4644577 4645408 -144138064 + L1M2 LINE L1 1290 2101 -4748 2344 103 0 3 chr11 4645408 4645719 -144137753 + AluSg SINE Alu 1 310 0 3932 213 24 41 chr11 4645719 4645925 -144137547 + L1M2 LINE L1 2101 2309 -4540 1713 151 5 21 chr11 4645921 4646047 -144137425 + L1PA15 LINE L1 4366 4492 -1673 * 2466 90 0 3 chr11 4646047 4646358 -144137114 + AluY SINE Alu 1 310 -1 1713 151 5 21 chr11 4646358 4647949 -144135523 + L1PA15 LINE L1 4492 6158 -7 4648 234 55 7 chr11 4647952 4648956 -144134516 + ERVL LTR ERVL 2877 3928 -1836 * 5333 204 22 2 chr11 4648954 4649936 -144133536 + ERVL LTR ERVL 4325 5326 -438 2366 63 0 0 chr11 4650656 4650972 -144132500 - AluY SINE Alu 0 316 1 2214 118 0 0 chr11 4651376 4651663 -144131809 + AluSg SINE Alu 1 287 -23 288 303 58 10 chr11 4652304 4652458 -144131014 - MIR SINE MIR -64 144 13 330 161 42 8 chr11 4653081 4653199 -144130273 + (TA)n Simple_repeat Simple_repeat 1 122 0 301 175 10 136 chr11 4653211 4653314 -144130158 - L1MC4 LINE L1 -1339 6703 6614 2092 100 0 0 chr11 4653788 4654059 -144129413 - AluSq SINE Alu -12 301 31 1298 168 45 4 chr11 4654185 4654429 -144129043 - MSTB LTR MaLR -172 254 1 671 220 42 37 chr11 4654431 4654622 -144128850 + L1MA9 LINE L1 6083 6274 -38 199 362 116 15 chr11 4654825 4655024 -144128448 - MIR SINE MIR -26 236 18 23 54 0 0 chr11 4656061 4656098 -144127374 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 71 14 chr11 4656913 4657054 -144126418 + MIR3 SINE MIR 7 155 -53 253 272 229 68 chr11 4658167 4658310 -144125162 - MLT1K LTR MaLR 0 588 469 1740 149 83 0 chr11 4658310 4658586 -144124886 + AluSx SINE Alu 1 299 -13 253 272 229 68 chr11 4658586 4658765 -144124707 - MLT1K LTR MaLR -119 469 214 2318 60 53 27 chr11 4658765 4659064 -144124408 - AluY SINE Alu -4 307 1 1476 191 67 0 chr11 4659559 4659826 -144123646 + AluJb SINE Alu 1 285 -27 2470 262 67 72 chr11 4659860 4660802 -144122670 + L1M4c LINE L1 818 1763 -4619 2070 137 3 0 chr11 4660802 4661102 -144122370 - AluSx SINE Alu -3 309 9 2470 262 67 72 chr11 4661102 4662793 -144120679 + L1M4c LINE L1 1763 3544 -2838 1701 251 33 17 chr11 4662835 4663294 -144120178 + L1M3e LINE L1 1 466 -6564 267 104 292 0 chr11 4663312 4663360 -144120112 + L1M4 LINE L1 4914 4975 -1171 * 1085 195 37 18 chr11 4663359 4663631 -144119841 + L1MA8 LINE L1 5858 6134 -157 1446 79 0 0 chr11 4663631 4663809 -144119663 - AluY SINE Alu -15 296 119 634 180 0 0 chr11 4663816 4663916 -144119556 - MER45A DNA AcHobo -16 162 63 466 301 138 22 chr11 4663985 4664261 -144119211 - LTR16C LTR ERVL -25 466 159 201 162 0 0 chr11 4664261 4664298 -144119174 + T-rich Low_complexity Low_complexity 1 37 0 5064 16 2 0 chr11 4664298 4664842 -144118630 - L1PA2 LINE L1 0 6155 5611 9398 27 3 0 chr11 4664842 4666163 -144117309 + L1PA2 LINE L1 4280 5604 -551 818 62 0 174 chr11 4666164 4666325 -144117147 - AluSq/x SINE Alu -179 133 2 328 315 28 9 chr11 4666325 4666432 -144117040 + L1M4c LINE L1 3771 3879 -2503 332 355 123 0 chr11 4669195 4669333 -144114139 + L2 LINE L2 2909 3063 -250 4043 68 20 31 chr11 4669818 4670397 -144113075 - PABL_A LTR ERV1 0 660 87 2219 108 0 0 chr11 4670397 4670693 -144112779 - AluSg SINE Alu -14 296 1 4043 68 20 31 chr11 4670693 4670719 -144112753 - PABL_A LTR ERV1 -573 87 62 1215 133 12 0 chr11 4670721 4670894 -144112578 + AluSq SINE Alu 4 178 -135 5062 110 207 102 chr11 4671358 4672765 -144110707 + pTR5 LTR ERV1 741 2295 -143 2333 54 48 0 chr11 4674187 4674302 -144109170 + AluY SINE Alu 1 109 -202 288 0 0 0 chr11 4674302 4674334 -144109138 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2333 54 48 0 chr11 4674334 4674513 -144108959 + AluY SINE Alu 109 309 -2 327 310 85 99 chr11 4675159 4675280 -144108192 + L2 LINE L2 1626 1747 -1567 1477 156 35 44 chr11 4675280 4675619 -144107853 - L1MA7 LINE L1 0 6291 5956 327 310 85 99 chr11 4675619 4676348 -144107124 + L2 LINE L2 1747 2464 -850 323 325 62 58 chr11 4676838 4677130 -144106342 + L2 LINE L2 3016 3308 -5 514 147 68 0 chr11 4679181 4679311 -144104161 + L1MB1 LINE L1 6008 6161 -28 183 139 0 0 chr11 4681155 4681191 -144102281 + (CA)n Simple_repeat Simple_repeat 1 36 0 492 317 87 48 chr11 4681461 4681944 -144101528 + LTR33 LTR ERVL 16 517 -4 1963 152 0 41 chr11 4682637 4682953 -144100519 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr11 4683033 4683055 -144100417 + AT_rich Low_complexity Low_complexity 1 22 0 1031 329 24 12 chr11 4683089 4683515 -144099957 + LTR16B LTR ERVL 34 464 0 1613 167 9 43 chr11 4683897 4684220 -144099252 + AluJb SINE Alu 1 312 0 1321 309 51 21 chr11 4684649 4685261 -144098211 + HERV16 LTR ERVL 947 1576 -3420 10072 225 23 53 chr11 4685325 4688005 -144095467 + L1P5 LINE L1 1973 4424 -2435 2184 118 0 25 chr11 4688005 4688319 -144095153 + AluSx SINE Alu 1 306 -6 10072 225 23 53 chr11 4688319 4690324 -144093148 + L1P5 LINE L1 4424 6488 -371 870 145 15 0 chr11 4690324 4690455 -144093017 + AluSq/x SINE Alu 1 133 -179 189 0 0 0 chr11 4690455 4690476 -144092996 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 4690671 4690694 -144092778 + AT_rich Low_complexity Low_complexity 1 23 0 375 257 0 0 chr11 4690903 4691016 -144092456 + L1P5 LINE L1 5668 5780 -376 574 214 5 102 chr11 4691021 4691227 -144092245 + AluJb SINE Alu 1 186 -126 350 242 0 40 chr11 4691277 4691404 -144092068 + FLAM_A SINE Alu 25 147 0 827 176 53 88 chr11 4691407 4691669 -144091803 + L1MA8 LINE L1 6035 6287 -4 22 0 0 0 chr11 4691897 4691919 -144091553 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 4692465 4692488 -144090984 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 4692629 4692653 -144090819 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 4692749 4692774 -144090698 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 4693825 4693848 -144089624 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 4695324 4695345 -144088127 + AT_rich Low_complexity Low_complexity 1 21 0 549 89 13 0 chr11 4695563 4695642 -144087830 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr11 4695652 4695680 -144087792 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr11 4695696 4695732 -144087740 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 224 349 82 41 chr11 4696166 4696312 -144087160 + L2 LINE L2 2962 3113 -159 853 270 89 32 chr11 4696757 4697387 -144086085 - L1ME3A LINE L1 -58 6112 5451 1154 99 22 63 chr11 4697681 4697776 -144085696 - L1MA3 LINE L1 0 6305 6208 2153 118 17 0 chr11 4697776 4698064 -144085408 + AluSx SINE Alu 1 293 -19 1154 99 22 63 chr11 4698064 4698190 -144085282 - L1MA3 LINE L1 -97 6208 6093 320 232 19 39 chr11 4700896 4701034 -144082438 + (TAA)n Simple_repeat Simple_repeat 3 139 -15 1736 184 0 0 chr11 4701034 4701338 -144082134 + AluSx SINE Alu 9 312 0 320 232 19 39 chr11 4701338 4701354 -144082118 + (TAA)n Simple_repeat Simple_repeat 139 154 0 2812 19 0 0 chr11 4701557 4701867 -144081605 + AluYb8 SINE Alu 1 310 -8 771 284 23 31 chr11 4702403 4702660 -144080812 - MLT2D LTR ERVL 0 414 160 1726 159 0 45 chr11 4702919 4703228 -144080244 - AluJb SINE Alu -9 303 9 26 0 0 0 chr11 4703654 4703680 -144079792 + AT_rich Low_complexity Low_complexity 1 26 0 2903 157 14 6 chr11 4704506 4705015 -144078457 - LTR10D LTR ERV1 0 513 1 1911 180 91 28 chr11 4705466 4705927 -144077545 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr11 4706345 4706368 -144077104 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 703 146 0 90 chr11 4706996 4707140 -144076332 + FLAM_C SINE Alu 1 131 -2 1984 119 10 35 chr11 4707209 4707519 -144075953 - AluSx SINE Alu -10 302 1 21 36 0 0 chr11 4707522 4707550 -144075922 + AT_rich Low_complexity Low_complexity 1 28 0 2305 50 16 10 chr11 4707769 4708072 -144075400 + AluY SINE Alu 1 305 -6 1698 191 91 14 chr11 4708098 4708518 -144074954 - MLT1C LTR MaLR 0 467 16 530 331 134 9 chr11 4709340 4709684 -144073788 - L2 LINE L2 -1 3312 2926 389 229 131 56 chr11 4709746 4710051 -144073421 + L1MB7 LINE L1 5850 6177 -1 256 409 0 0 chr11 4710065 4710158 -144073314 - L2 LINE L2 -319 2994 2902 2210 95 0 7 chr11 4712024 4712335 -144071137 - AluSc SINE Alu 0 309 1 1623 259 35 52 chr11 4713133 4713575 -144069897 - L1MB7 LINE L1 -104 6080 5653 2945 6 0 0 chr11 4713575 4713893 -144069579 + AluYb8 SINE Alu 1 318 0 1623 259 35 52 chr11 4713893 4714160 -144069312 - L1MB7 LINE L1 -531 5653 5383 1187 221 20 57 chr11 4714204 4714440 -144069032 - L1MB7 LINE L1 -1741 4405 4189 1748 157 40 13 chr11 4714440 4714740 -144068732 - AluSx SINE Alu -4 308 1 1187 221 20 57 chr11 4714740 4714906 -144068566 - L1MB7 LINE L1 -1957 4189 4018 270 0 0 0 chr11 4714910 4714940 -144068532 + (T)n Simple_repeat Simple_repeat 1 30 0 1577 112 65 4 chr11 4714971 4715203 -144068269 - AluSx SINE Alu -14 298 53 1628 225 27 9 chr11 4715206 4715651 -144067821 - L1MB7 LINE L1 -2156 3990 3538 433 296 27 0 chr11 4715716 4715902 -144067570 - L1MB7 LINE L1 -3317 2829 2639 315 224 10 31 chr11 4715952 4716050 -144067422 - MLT1D LTR MaLR -8 497 402 760 190 95 28 chr11 4716055 4716234 -144067238 + MLT1C LTR MaLR 276 466 -1 379 157 26 85 chr11 4716236 4716389 -144067083 - L1MCa LINE L1 -4030 2185 2042 189 153 76 7 chr11 4716459 4716603 -144066869 + (TA)n Simple_repeat Simple_repeat 1 154 0 22 48 0 48 chr11 4716620 4716682 -144066790 + AT_rich Low_complexity Low_complexity 1 59 0 284 202 31 23 chr11 4716698 4716827 -144066645 + (TA)n Simple_repeat Simple_repeat 1 130 0 825 207 103 16 chr11 4716831 4717175 -144066297 - L1MCa LINE L1 -4199 2016 1706 229 220 20 90 chr11 4717276 4717376 -144066096 - L1M4 LINE L1 -1858 4288 4196 2775 120 21 14 chr11 4717389 4717709 -144065763 - L1PA16 LINE L1 -12 6154 5829 2422 84 0 0 chr11 4717709 4718017 -144065455 - AluY SINE Alu -1 310 3 2775 120 21 14 chr11 4718017 4718128 -144065344 - L1PA16 LINE L1 -337 5829 5720 2485 112 8 3 chr11 4718128 4718512 -144064960 + L1P4 LINE L1 5292 5677 -489 729 252 14 28 chr11 4718546 4718828 -144064644 - L1M4 LINE L1 -1948 4198 3921 * 780 235 63 48 chr11 4718814 4719146 -144064326 - L1M4 LINE L1 -847 5299 4963 226 362 60 60 chr11 4719315 4719616 -144063856 + MLT1K LTR MaLR 4 304 -284 602 192 57 6 chr11 4720718 4720895 -144062577 - MER53 DNA DNA -3 186 1 2078 119 0 7 chr11 4721862 4722178 -144061294 + AluSx SINE Alu 1 314 0 21 57 0 0 chr11 4722181 4722216 -144061256 + AT_rich Low_complexity Low_complexity 1 35 0 1356 109 0 0 chr11 4723052 4723235 -144060237 - AluSp SINE Alu -11 302 120 1328 226 147 22 chr11 4724112 4724527 -144058945 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr11 4724597 4724618 -144058854 + AT_rich Low_complexity Low_complexity 1 21 0 246 355 23 17 chr11 4724780 4724952 -144058520 + MIR SINE MIR 40 212 -50 25 0 0 0 chr11 4724959 4724984 -144058488 + AT_rich Low_complexity Low_complexity 1 25 0 1455 194 126 55 chr11 4725371 4725793 -144057679 - MLT2B1 LTR ERVL 0 520 69 361 214 90 0 chr11 4725810 4725899 -144057573 - MLT2B1 LTR ERVL -416 99 3 214 205 26 0 chr11 4726006 4726084 -144057388 + (TA)n Simple_repeat Simple_repeat 2 81 0 2132 86 0 83 chr11 4726143 4726469 -144057003 - AluSq SINE Alu -14 299 1 1068 255 28 61 chr11 4727235 4727777 -144055695 - MLT1E1 LTR MaLR 0 593 23 3616 35 0 0 chr11 4728454 4728915 -144054557 - L1P LINE L1 -2802 3344 2884 * 10161 42 1 0 chr11 4728914 4730159 -144053313 + L1P LINE L1 3335 4580 -1566 3832 87 14 40 chr11 4730414 4731033 -144052439 - L1MA2 LINE L1 0 6304 5702 322 318 19 0 chr11 4731231 4731338 -144052134 + L1MC4 LINE L1 6608 6716 -1326 1440 254 42 26 chr11 4731479 4731909 -144051563 + L1MB5 LINE L1 5690 6126 -48 2829 104 42 82 chr11 4731920 4732496 -144050976 - L1MA1 LINE L1 0 6302 5750 786 50 0 20 chr11 4732498 4732599 -144050873 + L1MA1 LINE L1 5651 5749 -553 261 186 0 14 chr11 4732599 4732669 -144050803 + L1MB3 LINE L1 6115 6183 0 459 324 7 0 chr11 4732794 4732933 -144050539 - Charlie1 DNA MER1_type -2621 140 1 2328 107 0 3 chr11 4733361 4733669 -144049803 - AluSq SINE Alu -6 307 1 236 210 16 0 chr11 4734586 4734648 -144048824 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 1156 155 117 29 chr11 4734974 4735213 -144048259 - L1MA4 LINE L1 -388 5912 5653 2062 159 26 5 chr11 4735214 4735603 -144047869 + L1MA4 LINE L1 5899 6295 -5 236 372 53 21 chr11 4737111 4737299 -144046173 - MIR SINE MIR -13 249 56 282 287 70 17 chr11 4737468 4737583 -144045889 + MIR SINE MIR 53 173 -89 953 202 33 24 chr11 4738730 4739061 -144044411 + L1MA9 LINE L1 3125 3458 -2688 * 1161 166 5 0 chr11 4739036 4739247 -144044225 + L1MA9 LINE L1 4803 5014 -1132 27 0 0 0 chr11 4740525 4740552 -144042920 + AT_rich Low_complexity Low_complexity 1 27 0 2019 118 14 0 chr11 4742860 4743157 -144040315 + AluSx SINE Alu 1 301 -11 1699 199 37 20 chr11 4743352 4743754 -144039718 + L1MA9 LINE L1 5743 6151 -161 34 24 0 0 chr11 4743920 4743961 -144039511 + AT_rich Low_complexity Low_complexity 1 41 0 2070 89 40 6 chr11 4743965 4744290 -144039182 - L1MA1 LINE L1 0 6302 5967 1069 292 18 12 chr11 4745179 4745511 -144037961 + L1M4 LINE L1 361 694 -5848 1374 214 37 29 chr11 4745659 4746010 -144037462 + L1M4 LINE L1 4477 4830 -1814 1312 274 19 7 chr11 4746015 4746445 -144037027 + L1M4 LINE L1 4965 5399 -1245 264 108 0 0 chr11 4746457 4746494 -144036978 + L1MA7 LINE L1 6072 6108 -183 * 7392 258 18 6 chr11 4746479 4748578 -144034894 - L1 LINE L1 -1810 4336 2213 2785 206 186 12 chr11 4748577 4749467 -144034005 + L1 LINE L1 4307 5351 -795 * 661 44 2 1 chr11 4749567 4749657 -144033815 - L1MC/D LINE L1 -356 5799 5707 392 245 27 27 chr11 4750191 4750338 -144033134 - L1ME LINE L1 -381 5789 5643 23 0 0 0 chr11 4752357 4752380 -144031092 + AT_rich Low_complexity Low_complexity 1 23 0 1143 176 42 0 chr11 4753600 4753866 -144029606 - L1ME LINE L1 -743 5403 5164 1110 86 0 6 chr11 4753873 4754035 -144029437 + L1PA12 LINE L1 6008 6168 0 301 289 74 33 chr11 4754667 4754909 -144028563 - L1ME LINE L1 -1818 4328 4077 25 0 0 0 chr11 4755049 4755074 -144028398 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 53 30 chr11 4755074 4755138 -144028334 + L1M4 LINE L1 4323 4384 -1762 5745 25 1 6 chr11 4755138 4755860 -144027612 + L1PA4 LINE L1 5463 6181 0 289 269 53 30 chr11 4755860 4756058 -144027414 + L1M4 LINE L1 4384 4592 -1554 310 356 56 0 chr11 4756150 4756310 -144027162 + L1M4 LINE L1 4698 4866 -1280 474 259 0 0 chr11 4756447 4756555 -144026917 + L1M2a LINE L1 8 115 -7053 3837 184 45 21 chr11 4756564 4757654 -144025818 + L1M2a LINE L1 1524 2655 -4513 382 378 22 6 chr11 4757728 4757908 -144025564 - L2 LINE L2 -2926 388 206 216 211 19 0 chr11 4759809 4759861 -144023611 + CT-rich Low_complexity Low_complexity 2 54 0 259 283 106 35 chr11 4760601 4760799 -144022673 - MIR SINE MIR 0 262 51 268 141 14 14 chr11 4761824 4761895 -144021577 + CT-rich Low_complexity Low_complexity 2 72 0 859 245 102 32 chr11 4762634 4763079 -144020393 - Charlie1b DNA MER1_type -44 479 6 3189 68 13 44 chr11 4764949 4765353 -144018119 + MLT2A1 LTR ERVL 1 391 -53 225 0 0 0 chr11 4765353 4765378 -144018094 + (CA)n Simple_repeat Simple_repeat 2 26 0 3189 68 13 44 chr11 4765378 4765431 -144018041 + MLT2A1 LTR ERVL 391 444 0 206 363 55 11 chr11 4766165 4766256 -144017216 - MIR3 SINE MIR -3 205 111 2874 149 114 5 chr11 4766997 4767568 -144015904 - LTR24C LTR ERV1 0 635 3 1125 240 10 13 chr11 4768019 4768306 -144015166 - L1P3 LINE L1 -561 5611 5322 260 260 39 13 chr11 4768471 4768548 -144014924 + Tigger5 DNA MER2_type 1 79 -2244 1409 67 0 10 chr11 4768878 4769072 -144014400 + L1M1 LINE L1 5625 5816 -486 371 180 0 0 chr11 4769072 4769133 -144014339 + Tigger5 DNA MER2_type 2262 2322 -1 27 49 0 0 chr11 4770560 4770601 -144012871 + AT_rich Low_complexity Low_complexity 1 41 0 1294 112 28 28 chr11 4770605 4770702 -144012770 - L1PA16 LINE L1 -9 6157 6061 1661 143 62 54 chr11 4770702 4771074 -144012398 + THE1C LTR MaLR 1 375 0 1294 112 28 28 chr11 4771074 4771190 -144012282 - L1PA16 LINE L1 -104 6062 5944 199 309 15 15 chr11 4771703 4771771 -144011701 - MIR SINE MIR -63 145 78 580 306 53 51 chr11 4772807 4773202 -144010270 + LTR16A1 LTR ERVL 62 457 0 932 211 22 0 chr11 4773353 4773538 -144009934 - MER5A DNA MER1_type 0 189 1 1001 246 0 5 chr11 4773898 4774113 -144009359 - MER58A DNA MER1_type 0 224 11 1871 151 47 0 chr11 4774927 4775225 -144008247 + AluSx SINE Alu 1 312 0 1895 81 0 67 chr11 4775302 4775585 -144007887 + AluY SINE Alu 36 299 -12 265 252 87 26 chr11 4775972 4776087 -144007385 + MIR SINE MIR 113 234 -28 4489 184 27 30 chr11 4776282 4777022 -144006450 - L1PA16 LINE L1 -16 6150 5409 1725 180 14 0 chr11 4777022 4777305 -144006167 - AluJb SINE Alu -25 287 1 4489 184 27 30 chr11 4777305 4778442 -144005030 - L1PA16 LINE L1 -757 5409 4285 25 0 0 0 chr11 4779351 4779376 -144004096 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 4779522 4779550 -144003922 + (CA)n Simple_repeat Simple_repeat 2 29 0 3548 212 14 16 chr11 4781419 4782715 -144000757 + L1MB3 LINE L1 4498 5787 -396 322 173 12 25 chr11 4782717 4782798 -144000674 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2078 162 15 8 chr11 4782802 4783197 -144000275 + L1MB3 LINE L1 5786 6183 0 1623 152 82 0 chr11 4783382 4783652 -143999820 - AluSg SINE Alu -18 292 1 406 293 75 40 chr11 4784543 4785065 -143998407 + L1ME4a LINE L1 5582 6121 0 300 164 119 0 chr11 4788225 4788292 -143995180 + L1PA15 LINE L1 6089 6163 -2 267 255 39 20 chr11 4788568 4788670 -143994802 - Charlie8 DNA MER1_type -2220 197 94 765 250 59 0 chr11 4788758 4788962 -143994510 + L1PA16 LINE L1 5951 6166 0 22 0 0 0 chr11 4789034 4789056 -143994416 + AT_rich Low_complexity Low_complexity 1 22 0 305 339 35 29 chr11 4789359 4789530 -143993942 + MIR SINE MIR 91 262 0 1849 171 3 7 chr11 4789640 4789944 -143993528 - AluSx SINE Alu -9 303 1 197 348 22 11 chr11 4790398 4790487 -143992985 - L2 LINE L2 -449 2865 2776 324 48 0 0 chr11 4790804 4790846 -143992626 + (CA)n Simple_repeat Simple_repeat 1 42 0 684 220 28 98 chr11 4790920 4791134 -143992338 - MIR SINE MIR -62 200 2 2277 91 109 0 chr11 4791288 4791628 -143991844 + MER51B LTR ERV1 1 377 0 26 0 0 0 chr11 4791933 4791959 -143991513 + AT_rich Low_complexity Low_complexity 1 26 0 1847 145 19 26 chr11 4792016 4792181 -143991291 + AluSx SINE Alu 1 166 -146 2263 142 28 14 chr11 4792181 4792540 -143990932 + THE1B LTR MaLR 1 364 0 11646 87 10 3 chr11 4792540 4794108 -143989364 + THE1B-int LTR MaLR 1 1580 0 2315 124 42 14 chr11 4794108 4794462 -143989010 + THE1B LTR MaLR 1 364 0 1847 145 19 26 chr11 4794462 4794604 -143988868 + AluSx SINE Alu 163 308 -4 200 400 0 0 chr11 4794746 4794826 -143988646 - L2 LINE L2 -246 3067 2988 2362 172 24 11 chr11 4794917 4795382 -143988090 - L1MA8 LINE L1 -347 5944 5474 209 192 39 0 chr11 4795923 4795975 -143987497 + A-rich Low_complexity Low_complexity 5 58 0 4840 31 0 3 chr11 4796363 4796941 -143986531 + L1PA4 LINE L1 5580 6155 0 412 75 0 0 chr11 4796942 4796995 -143986477 + L1PA10 LINE L1 5818 5870 -298 22 0 0 0 chr11 4796995 4797017 -143986455 + AT_rich Low_complexity Low_complexity 1 22 0 783 117 0 66 chr11 4797281 4797418 -143986054 - MER1B DNA MER1_type 0 339 212 3618 107 15 0 chr11 4797428 4798035 -143985437 - L1PBa LINE L1 -5015 1848 1085 3926 148 96 3 chr11 4798052 4798796 -143984676 - L1PBa LINE L1 -5739 1124 160 3726 191 19 0 chr11 4798796 4799551 -143983921 + L1MA7 LINE L1 5523 6291 0 1194 187 0 35 chr11 4799716 4799946 -143983526 - AluJb SINE Alu -12 300 79 267 404 40 27 chr11 4799984 4800268 -143983204 - L2 LINE L2 -285 2987 2702 507 232 63 7 chr11 4800555 4800697 -143982775 - L1MA10 LINE L1 -10 6324 6175 31 44 0 0 chr11 4800700 4800745 -143982727 + AT_rich Low_complexity Low_complexity 1 45 0 478 265 15 22 chr11 4800751 4800887 -143982585 + MLT1F1 LTR MaLR 1 135 -407 1312 285 9 6 chr11 4800887 4801210 -143982262 + L1M3c LINE L1 7 330 -5811 493 248 9 0 chr11 4801208 4801317 -143982155 - L1M3c LINE L1 -5695 446 337 * 1627 148 45 7 chr11 4801318 4801481 -143981991 + L1MA9 LINE L1 5987 6142 -170 180 77 0 0 chr11 4801481 4801507 -143981965 + (CA)n Simple_repeat Simple_repeat 2 27 0 1627 148 45 7 chr11 4801507 4801653 -143981819 + L1MA9 LINE L1 6142 6308 -4 786 287 31 11 chr11 4801825 4802086 -143981386 + MLT1F1 LTR MaLR 302 567 0 3488 38 2 29 chr11 4802248 4802701 -143980771 - L1PA6 LINE L1 -6 6148 5708 1403 69 0 0 chr11 4802701 4802876 -143980596 + L1PA6 LINE L1 5544 5718 -436 * 6348 199 9 4 chr11 4802860 4804140 -143979332 - L1PA15-16 LINE L1 -1586 5263 3977 3789 246 16 19 chr11 4804137 4805399 -143978073 - L1PA15-16 LINE L1 -3684 3165 1895 * 480 18 0 0 chr11 4805402 4805459 -143978013 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2220 153 42 83 chr11 4805549 4805645 -143977827 + L1MA4 LINE L1 5762 5860 -440 1895 122 46 20 chr11 4805645 4805949 -143977523 + AluSx SINE Alu 1 312 0 2220 153 42 83 chr11 4805949 4806406 -143977066 + L1MA4 LINE L1 5860 6292 -8 216 97 0 0 chr11 4806766 4806797 -143976675 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 4807512 4807533 -143975939 + AT_rich Low_complexity Low_complexity 1 21 0 3171 90 0 0 chr11 4809167 4809599 -143973873 - L1PA7 LINE L1 0 6154 5723 325 55 68 0 chr11 4810842 4810915 -143972557 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 0 0 0 chr11 4810921 4810944 -143972528 + AT_rich Low_complexity Low_complexity 1 23 0 324 133 36 0 chr11 4812320 4812403 -143971069 + CT-rich Low_complexity Low_complexity 2 87 0 801 357 65 15 chr11 4812601 4813077 -143970395 + L2 LINE L2 2814 3313 0 310 315 79 43 chr11 4813370 4813675 -143969797 + L1M4 LINE L1 2963 3278 -2868 2118 20 0 0 chr11 4813686 4813932 -143969540 - L1PA4 LINE L1 -5 6150 5905 242 237 151 0 chr11 4814240 4814333 -143969139 - MLT1E LTR MaLR -167 400 294 198 0 0 0 chr11 4814347 4814369 -143969103 + (T)n Simple_repeat Simple_repeat 1 22 0 231 94 0 0 chr11 4814452 4814484 -143968988 - L1P LINE L1 -728 5426 5395 2915 62 20 20 chr11 4814484 4814888 -143968584 + L1PA8 LINE L1 5769 6172 0 506 285 13 7 chr11 4814925 4815076 -143968396 - MLT1E LTR MaLR -439 154 3 471 274 85 33 chr11 4815077 4815347 -143968125 + L1ME3A LINE L1 5721 6004 -166 1017 241 133 22 chr11 4815379 4815703 -143967769 - MLT2B1 LTR ERVL -158 362 3 301 322 41 16 chr11 4815707 4815828 -143967644 + L1ME3A LINE L1 6043 6166 -4 218 175 48 0 chr11 4816123 4816186 -143967286 + (AATAG)n Simple_repeat Simple_repeat 4 69 0 5049 179 18 12 chr11 4817017 4818834 -143964638 - L1PB4 LINE L1 -8 6148 4315 21 36 0 0 chr11 4818839 4818867 -143964605 + AT_rich Low_complexity Low_complexity 1 28 0 2716 159 11 0 chr11 4818902 4819360 -143964112 - L1PA16 LINE L1 -105 6061 5599 * 3978 193 30 68 chr11 4819356 4820842 -143962630 + L1PA16 LINE L1 4186 5600 -566 2269 218 19 0 chr11 4820839 4821353 -143962119 - L1PB4 LINE L1 -1818 4328 3805 * 202 395 35 0 chr11 4823069 4823183 -143960289 + MIR SINE MIR 67 184 -78 189 0 0 0 chr11 4825903 4825924 -143957548 + (GA)n Simple_repeat Simple_repeat 2 22 0 2712 140 39 16 chr11 4827065 4827552 -143955920 + L1PA16 LINE L1 5660 6157 -9 278 54 0 0 chr11 4827554 4827591 -143955881 + L1MA6 LINE L1 6112 6148 -152 12353 33 0 0 chr11 4827601 4829839 -143953633 - L1PA4 LINE L1 -3 6152 3914 683 170 14 0 chr11 4829839 4829978 -143953494 + L1MA6 LINE L1 6154 6296 -4 3704 195 38 55 chr11 4829987 4830049 -143953423 + L1MB5 LINE L1 4900 4962 -1212 2129 122 3 3 chr11 4830049 4830343 -143953129 + AluSc SINE Alu 6 299 -10 3704 195 38 55 chr11 4830343 4831036 -143952436 + L1MB5 LINE L1 4962 5627 -547 2176 96 6 16 chr11 4831036 4831350 -143952122 + AluY SINE Alu 1 311 0 3704 195 38 55 chr11 4831350 4831873 -143951599 + L1MB5 LINE L1 5627 6157 -17 1322 237 95 94 chr11 4832397 4832942 -143950530 + MER77 LTR ERV1 54 599 -6 273 313 102 0 chr11 4833192 4833358 -143950114 - L1M4 LINE L1 -1307 4839 4657 421 321 57 24 chr11 4833462 4833671 -143949801 + MIR SINE MIR 47 262 0 182 219 16 0 chr11 4835080 4835144 -143948328 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 139 25 13 chr11 4835667 4835746 -143947726 + C-rich Low_complexity Low_complexity 4 83 0 646 126 0 0 chr11 4835847 4835950 -143947522 - L1 LINE L1 -1565 4581 4479 520 265 36 14 chr11 4835984 4836207 -143947265 - L1M4 LINE L1 -1349 4797 4570 12106 148 45 10 chr11 4836207 4836921 -143946551 + Tigger1 DNA MER2_type 252 939 -1479 333 0 0 0 chr11 4836921 4836958 -143946514 + (TC)n Simple_repeat Simple_repeat 2 38 0 297 109 0 0 chr11 4836957 4837012 -143946460 + (TA)n Simple_repeat Simple_repeat 2 56 0 * 12106 148 45 10 chr11 4836958 4837012 -143946460 + Tigger1 DNA MER2_type 939 990 -1428 2014 129 3 3 chr11 4837012 4837298 -143946174 - AluSq SINE Alu -27 286 1 12106 148 45 10 chr11 4837298 4838675 -143944797 + Tigger1 DNA MER2_type 990 2418 0 218 326 123 36 chr11 4840183 4840321 -143943151 + L3 LINE CR1 1304 1453 -124 1068 108 30 0 chr11 4840338 4840504 -143942968 + L1PA13 LINE L1 5993 6163 0 398 397 39 0 chr11 4840974 4841231 -143942241 - L2 LINE L2 -339 2975 2709 351 0 0 0 chr11 4841560 4841599 -143941873 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr11 4841598 4841621 -143941851 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 210 143 0 0 chr11 4841765 4841800 -143941672 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 444 182 26 0 chr11 4844502 4844579 -143938893 - MER2 DNA MER2_type 0 345 267 1125 173 20 10 chr11 4844605 4844807 -143938665 - MER2 DNA MER2_type -135 210 7 207 358 32 0 chr11 4845376 4845471 -143938001 - MIR SINE MIR -51 211 114 354 186 44 9 chr11 4845848 4845961 -143937511 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1306 228 140 33 chr11 4846635 4847137 -143936335 - LTR10B LTR ERV1 -3 544 1 5640 263 9 7 chr11 4847141 4848510 -143934962 - HERVI LTR ERV1 -2 7783 6412 1604 219 19 17 chr11 4848858 4849219 -143934253 - HERVI LTR ERV1 -3737 3159 2798 622 198 9 0 chr11 4849190 4849306 -143934166 - HERVI LTR ERV1 -2164 4485 4369 * 299 211 33 78 chr11 4849326 4849416 -143934056 - HERVI LTR ERV1 -2369 5416 5331 * 337 237 31 41 chr11 4849385 4849482 -143933990 - HERVI LTR ERV1 -2858 4927 4832 951 177 74 5 chr11 4849512 4849778 -143933694 - HERVI LTR ERV1 -3146 4639 4325 464 276 55 7 chr11 4849840 4849985 -143933487 - HERVI LTR ERV1 -3485 3164 3013 2594 197 50 68 chr11 4850568 4851644 -143931828 - HERVI LTR ERV1 -6786 999 3 947 194 172 95 chr11 4851666 4852171 -143931301 - LTR10B LTR ERV1 -3 544 1 817 102 8 0 chr11 4852295 4852413 -143931059 - L1P LINE L1 -3161 2985 2867 42 20 0 0 chr11 4853571 4853620 -143929852 + AT_rich Low_complexity Low_complexity 1 49 0 5880 221 94 44 chr11 4853664 4854493 -143928979 + L1MDa LINE L1 2937 3724 -3841 1780 88 0 24 chr11 4854493 4854742 -143928730 + L1PA8A LINE L1 5882 6124 -7 2495 62 0 3 chr11 4854743 4855047 -143928425 + AluY SINE Alu 1 303 -8 5880 221 94 44 chr11 4855047 4856953 -143926519 + L1MDa LINE L1 3723 5839 -1726 23 54 0 0 chr11 4857876 4857913 -143925559 + AT_rich Low_complexity Low_complexity 1 37 0 229 250 25 0 chr11 4859336 4859416 -143924056 + L1MC4 LINE L1 6620 6701 -1341 14080 159 45 8 chr11 4859430 4863845 -143919627 - L1PB1 LINE L1 0 6867 2619 204 67 0 0 chr11 4863845 4863875 -143919597 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 1797 141 30 0 chr11 4863875 4864144 -143919328 - AluSx SINE Alu -35 277 1 14080 159 45 8 chr11 4864144 4865752 -143917720 - L1PB1 LINE L1 -4247 2620 620 803 169 14 0 chr11 4865732 4865880 -143917592 - L1PB1 LINE L1 -6663 200 51 * 452 225 50 6 chr11 4865987 4866169 -143917303 - L1M4 LINE L1 -2929 3217 3028 761 203 0 0 chr11 4866192 4866335 -143917137 - MSTD-int LTR MaLR -1589 146 4 1977 155 58 56 chr11 4866337 4866730 -143916742 - MSTD LTR MaLR -2 394 1 1131 44 0 0 chr11 4867275 4867412 -143916060 + L1PA3 LINE L1 6016 6152 -3 498 322 52 17 chr11 4868182 4868415 -143915057 - MIR SINE MIR -10 252 12 384 245 19 10 chr11 4868523 4868636 -143914836 - LTR67 LTR ERVL -4 553 440 31100 54 37 3 chr11 4869324 4873280 -143910192 + L1P LINE L1 13 4103 -2043 401 230 11 0 chr11 4873286 4873373 -143910099 + LTR26 LTR ERV1 516 603 0 684 314 14 35 chr11 4873395 4873682 -143909790 + L1ME LINE L1 188 468 -5602 606 94 24 0 chr11 4873685 4873770 -143909702 + L1P LINE L1 12 98 -6048 * 6745 66 2 19 chr11 4873764 4874652 -143908820 + L1P LINE L1 617 1489 -4657 10917 24 0 1 chr11 4874652 4876689 -143906783 + L1PA4 LINE L1 4114 6153 -2 1071 304 24 28 chr11 4876695 4877235 -143906237 + L1ME LINE L1 456 993 -5077 * 13786 162 75 26 chr11 4877224 4879786 -143903686 + L1M1 LINE L1 27 2713 -4852 5091 123 7 8 chr11 4880249 4881463 -143902009 + L1PA11 LINE L1 4745 5954 -220 1411 231 119 22 chr11 4882428 4882974 -143900498 - Zaphod DNA AcHobo -241 3790 3192 298 268 55 88 chr11 4884236 4884508 -143898964 + HERVFH21 LTR ERV1 1366 1628 -6629 937 283 57 56 chr11 4884694 4885721 -143897751 + HERVFH21 LTR ERV1 885 1923 -4731 2308 293 60 62 chr11 4885758 4888228 -143895244 + HERVFH21 LTR ERV1 1765 4940 -2348 335 126 27 35 chr11 4888677 4888750 -143894722 + HERVFH21 LTR ERV1 4614 4783 -1746 206 179 51 64 chr11 4888760 4888838 -143894634 + L2 LINE L2 2997 3073 -199 1042 80 7 7 chr11 4888870 4889007 -143894465 + AluSp SINE Alu 1 137 -176 9524 51 121 14 chr11 4889010 4890256 -143893216 + SVA Other Other 7 1386 0 702 285 63 59 chr11 4890257 4890782 -143892690 + HERVFH21 LTR ERV1 4686 5322 -1207 451 234 49 40 chr11 4892450 4892637 -143890835 + HERVFH21 LTR ERV1 4202 7147 -245 291 208 39 0 chr11 4892861 4892938 -143890534 + HERVFH21 LTR ERV1 6446 6525 -4 488 270 56 113 chr11 4895025 4895539 -143887933 - MLT1G LTR MaLR -42 548 64 1687 285 31 34 chr11 4895650 4896233 -143887239 + L1MEc LINE L1 39 619 -5777 577 227 78 17 chr11 4898611 4898790 -143884682 + L1P LINE L1 4254 4441 -1705 2266 99 0 29 chr11 4900299 4900612 -143882860 + AluSc SINE Alu 1 304 -5 293 97 16 97 chr11 4900902 4900964 -143882508 - U2 snRNA snRNA -131 57 1 203 167 0 21 chr11 4903823 4903871 -143879601 + CT-rich Low_complexity Low_complexity 2 48 0 202 200 0 0 chr11 4904415 4904455 -143879017 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 201 23 10 chr11 4905574 4905884 -143877588 - MER33 DNA MER1_type -22 302 1 183 100 0 0 chr11 4906580 4906610 -143876862 + (TTTTTA)n Simple_repeat Simple_repeat 3 32 0 206 206 44 0 chr11 4906619 4906687 -143876785 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 * 215 187 53 41 chr11 4906651 4906822 -143876650 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 505 94 9 113 chr11 4910355 4910461 -143873011 + LTR7 LTR ERV1 354 448 -2 14947 80 8 115 chr11 4910463 4913034 -143870438 + HERVH LTR ERV1 1 2297 -5416 1454 214 30 12 chr11 4913138 4913564 -143869908 - L1M4 LINE L1 -2976 3170 2737 552 263 234 24 chr11 4917339 4917719 -143865753 - LTR50 LTR ERVL -335 460 1 206 333 74 19 chr11 4920236 4920344 -143863128 - MIR SINE MIR -109 153 40 26 0 0 0 chr11 4920905 4920931 -143862541 + AT_rich Low_complexity Low_complexity 1 26 0 327 26 0 0 chr11 4921973 4922012 -143861460 - L1PA16 LINE L1 -5 6161 6123 5015 154 11 4 chr11 4922136 4922948 -143860524 - L1PA16 LINE L1 -41 6125 5308 22 56 0 0 chr11 4923233 4923269 -143860203 + AT_rich Low_complexity Low_complexity 1 36 0 218 347 54 27 chr11 4923349 4923496 -143859976 - L2 LINE L2 0 3272 3122 244 298 64 86 chr11 4924351 4924817 -143858655 + L1MEc LINE L1 333 788 -5608 2024 156 3 6 chr11 4924825 4925153 -143858319 - MER50 LTR ERV1 -24 710 384 349 73 91 0 chr11 4925266 4925321 -143858151 + L1PA15 LINE L1 6106 6165 0 21 0 0 0 chr11 4926169 4926190 -143857282 + AT_rich Low_complexity Low_complexity 1 21 0 761 124 16 47 chr11 4926326 4926455 -143857017 + LTR8 LTR ERV1 567 691 0 8397 101 15 52 chr11 4926455 4927752 -143855720 + HUERS-P1 LTR ERV1 1 1250 -5013 8874 123 25 56 chr11 4927795 4929341 -143854131 + HUERS-P1 LTR ERV1 1215 2711 -3552 295 319 30 21 chr11 4929341 4929576 -143853896 - L1M4 LINE L1 -2461 3685 3449 1418 262 42 39 chr11 4929780 4930212 -143853260 - L1MEc LINE L1 -5928 468 36 2187 124 0 0 chr11 4930342 4930641 -143852831 + AluSp SINE Alu 1 299 -14 1990 128 59 0 chr11 4931733 4932022 -143851450 - AluSg SINE Alu -4 306 1 215 340 71 29 chr11 4932962 4933200 -143850272 - L2 LINE L2 -1035 2279 2032 241 259 62 25 chr11 4933227 4933308 -143850164 - L2 LINE L2 -1363 1951 1868 2138 135 0 3 chr11 4933737 4934033 -143849439 - AluSx SINE Alu -17 295 1 1328 131 0 15 chr11 4934934 4935133 -143848339 - AluSq SINE Alu -117 196 1 267 333 16 24 chr11 4935243 4935366 -143848106 - L2 LINE L2 -2 3311 3190 229 390 39 0 chr11 4935456 4935533 -143847939 + L2 LINE L2 3149 3228 -44 292 350 42 8 chr11 4935668 4935788 -143847684 - L2 LINE L2 -2068 1246 1123 854 288 141 30 chr11 4935791 4936260 -143847212 + LTR33 LTR ERVL 1 521 0 803 228 25 30 chr11 4936477 4936679 -143846793 + MIR SINE MIR 41 241 -21 228 241 0 0 chr11 4937163 4937221 -143846251 + GA-rich Low_complexity Low_complexity 3 60 0 253 271 14 14 chr11 4937225 4937295 -143846177 + L1MEd LINE L1 460 529 -5590 202 273 131 10 chr11 4939790 4939889 -143843583 + L3b LINE CR1 1268 1378 -205 384 357 151 24 chr11 4940054 4940797 -143842675 + L2 LINE L2 1938 2774 -540 23 54 0 0 chr11 4941357 4941394 -143842078 + AT_rich Low_complexity Low_complexity 1 37 0 379 96 0 0 chr11 4941509 4941561 -143841911 - MADE1 DNA Mariner 0 80 29 5950 130 19 9 chr11 4942320 4943885 -143839587 - L1MA1 LINE L1 -127 6175 4589 2417 163 25 83 chr11 4944422 4944672 -143838800 - MER66B LTR ERV1 0 486 280 2125 128 0 7 chr11 4944672 4944976 -143838496 - AluSx SINE Alu -10 302 1 2417 163 25 83 chr11 4944976 4945241 -143838231 - MER66B LTR ERV1 -206 280 1 300 152 0 0 chr11 4946075 4946121 -143837351 + HERVK11 LTR ERVK 6722 6767 -1186 * 453 167 10 31 chr11 4946112 4946208 -143837264 + HERVK11 LTR ERVK 6963 7056 -897 * 2772 63 0 0 chr11 4946165 4946497 -143836975 - HERVK11 LTR ERVK -4731 3222 2891 * 3158 87 52 0 chr11 4946483 4946909 -143836563 - HERVK11 LTR ERVK -6341 1612 1165 2323 118 24 9 chr11 4946884 4947479 -143835993 - HERVK11 LTR ERVK -7081 872 206 * 2372 113 3 0 chr11 4947474 4947794 -143835678 - HERVK11 LTR ERVK -7632 321 1 5640 153 40 53 chr11 4947794 4948880 -143834592 - MER11C LTR ERVK 0 1071 1 2033 56 4 8 chr11 4949050 4949316 -143834156 + LTR7 LTR ERV1 1 265 -185 1860 111 15 19 chr11 4949714 4949976 -143833496 + AluSg SINE Alu 37 297 -13 22 56 0 0 chr11 4950174 4950210 -143833262 + AT_rich Low_complexity Low_complexity 1 36 0 217 328 86 9 chr11 4950680 4950796 -143832676 + MIR SINE MIR 57 181 -81 1771 219 19 32 chr11 4951171 4951541 -143831931 - MLT1A1 LTR MaLR 0 365 1 1813 200 42 12 chr11 4952774 4953188 -143830284 + L1MA9 LINE L1 5856 6282 -30 193 151 38 19 chr11 4953195 4953248 -143830224 + GA-rich Low_complexity Low_complexity 3 56 0 408 269 43 14 chr11 4954147 4954288 -143829184 + MIR SINE MIR 45 189 -73 238 311 59 0 chr11 4954481 4954616 -143828856 - MIR SINE MIR -1 261 119 573 157 38 22 chr11 4954623 4954740 -143828732 + MLT1C LTR MaLR 1 106 -361 463 251 165 75 chr11 4955353 4955898 -143827574 - L1MEd LINE L1 -4862 1257 664 1394 233 24 68 chr11 4955927 4956309 -143827163 + MLT1A1 LTR MaLR 1 365 0 246 136 0 0 chr11 4956425 4956469 -143827003 + (TG)n Simple_repeat Simple_repeat 1 44 0 376 106 30 15 chr11 4956583 4956649 -143826823 + Tigger3(Golem) DNA MER2_type 2431 2497 -532 198 103 0 0 chr11 4956804 4956833 -143826639 + (TA)n Simple_repeat Simple_repeat 2 30 0 5305 186 154 107 chr11 4957195 4958865 -143824607 - MER52A LTR ERV1 0 1755 7 1823 290 56 23 chr11 4959193 4959837 -143823635 + L1M2b LINE L1 1163 1827 -5382 1820 205 44 0 chr11 4959838 4960180 -143823292 + MSTA LTR MaLR 1 357 -71 608 355 12 0 chr11 4960180 4960425 -143823047 + MSTA-int LTR MaLR 8 255 -1396 3821 193 44 31 chr11 4960525 4961322 -143822150 + MLT1A1-int LTR MaLR 49 855 -796 3271 174 61 2 chr11 4961320 4961894 -143821578 + MLT1A1-int LTR MaLR 1044 1651 0 * 2583 157 36 2 chr11 4961894 4962307 -143821165 + MSTA LTR MaLR 1 427 -1 4980 161 11 41 chr11 4962310 4962910 -143820562 + L1M2 LINE L1 1478 2036 -4813 913 128 0 0 chr11 4962910 4963027 -143820445 + 5S rRNA rRNA 1 117 -4 4980 161 11 41 chr11 4963027 4963460 -143820012 + L1M2 LINE L1 2036 2480 -4369 748 100 10 0 chr11 4963460 4963560 -143819912 - MSTA LTR MaLR -319 109 9 6893 203 47 16 chr11 4963560 4965304 -143818168 + L1M2 LINE L1 2767 4565 -2283 1541 157 7 54 chr11 4965304 4965598 -143817874 - THE1B LTR MaLR 0 364 85 241 296 61 41 chr11 4966239 4966337 -143817135 + L2 LINE L2 3169 3268 -4 21 0 0 0 chr11 4966351 4966372 -143817100 + AT_rich Low_complexity Low_complexity 1 21 0 753 333 40 50 chr11 4968281 4968684 -143814788 + LTR16A LTR ERVL 52 450 0 22 56 0 0 chr11 4969017 4969053 -143814419 + AT_rich Low_complexity Low_complexity 1 36 0 182 253 287 0 chr11 4969424 4969511 -143813961 - L2 LINE L2 -493 2821 2710 378 337 139 34 chr11 4969613 4969881 -143813591 - L2 LINE L2 -2503 811 490 180 111 0 0 chr11 4969881 4969908 -143813564 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 378 337 139 34 chr11 4969908 4970019 -143813453 - L2 LINE L2 -2824 490 392 209 252 34 101 chr11 4970036 4970155 -143813317 + MIR SINE MIR 136 246 -16 210 279 118 0 chr11 4970566 4970634 -143812838 - L2 LINE L2 0 3313 3238 32 26 0 0 chr11 4970679 4970718 -143812754 + AT_rich Low_complexity Low_complexity 1 39 0 205 282 59 24 chr11 4973004 4973089 -143810383 + MIR SINE MIR 17 104 -104 256 376 43 0 chr11 4973692 4973809 -143809663 - MIR3 SINE MIR -53 155 34 416 303 32 27 chr11 4974362 4974534 -143808938 + MIR SINE MIR 34 206 -56 3484 60 0 9 chr11 4974780 4975232 -143808240 - LTR7 LTR ERV1 -2 448 1 2261 88 48 13 chr11 4975232 4975607 -143807865 - HERVH LTR ERV1 0 7713 7326 1343 120 18 5 chr11 4975609 4975826 -143807646 - HERVH LTR ERV1 -1894 5819 5600 4001 153 1 1 chr11 4975827 4976489 -143806983 - HERVH LTR ERV1 -2564 5149 4488 2774 124 7 2 chr11 4976491 4976950 -143806522 - HERVH LTR ERV1 -3720 3993 3533 271 352 62 14 chr11 4977057 4977202 -143806270 + MIR SINE MIR 100 251 -11 5542 37 0 4 chr11 4979732 4980407 -143803065 - L1PA4 LINE L1 0 6155 5484 210 143 0 0 chr11 4984112 4984147 -143799325 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 694 110 22 52 chr11 4984147 4984283 -143799189 - L1MA8 LINE L1 -507 5793 5662 1974 174 28 24 chr11 4984295 4984755 -143798717 + L1MA8 LINE L1 5825 6286 -5 555 249 52 29 chr11 4984977 4985150 -143798322 + MER33 DNA MER1_type 5 181 -143 505 179 62 0 chr11 4986551 4986696 -143796776 + MER33 DNA MER1_type 160 313 -11 282 329 174 18 chr11 4986956 4987175 -143796297 + L2 LINE L2 2595 2847 -467 626 369 47 8 chr11 4987809 4988172 -143795300 - LTR16A LTR ERVL -22 428 52 205 327 59 40 chr11 4990138 4990239 -143793233 - L2 LINE L2 -1 3271 3169 930 142 7 13 chr11 4990589 4990744 -143792728 - L1PB3 LINE L1 -17 6137 5984 22 35 0 0 chr11 4991191 4991220 -143792252 + AT_rich Low_complexity Low_complexity 1 29 0 328 353 107 0 chr11 4991243 4991430 -143792042 - MIR SINE MIR -55 207 1 382 335 110 40 chr11 4991836 4992389 -143791083 - L2 LINE L2 -540 2774 2183 226 294 71 53 chr11 4992775 4992945 -143790527 + L2 LINE L2 1868 2040 -1274 363 380 89 17 chr11 4993566 4994082 -143789390 - L2 LINE L2 -1618 1696 1144 395 224 174 12 chr11 4997212 4997373 -143786099 + MLT1J LTR MaLR 283 469 -42 711 183 57 22 chr11 4998275 4998505 -143784967 + L1M4 LINE L1 2789 3026 -3120 2478 283 44 37 chr11 4998617 4999529 -143783943 + L1PA15 LINE L1 1 918 -5869 7238 242 28 5 chr11 4999537 5002572 -143780900 + L1PA15 LINE L1 1277 4396 -2401 6473 212 11 3 chr11 5002992 5005366 -143778106 + L1PA15 LINE L1 4431 6812 -4 470 233 39 22 chr11 5005369 5005601 -143777871 + L1M4 LINE L1 3140 3375 -2771 310 269 0 58 chr11 5005705 5005809 -143777663 + CT-rich Low_complexity Low_complexity 3 100 0 2786 143 9 2 chr11 5005909 5006371 -143777101 + MER75 DNA T2_type 14 478 -36 2031 126 23 0 chr11 5006883 5007184 -143776288 + AluSq SINE Alu 1 308 -5 258 344 80 16 chr11 5007806 5007931 -143775541 + L3 LINE CR1 1434 1566 -11 232 362 43 29 chr11 5008217 5008355 -143775117 - L2 LINE L2 -2667 647 508 4422 171 24 45 chr11 5008511 5010231 -143773241 - L1MA8 LINE L1 -17 7693 6019 9658 58 7 110 chr11 5010231 5011774 -143771698 + SVA Other Other 4 1386 0 4422 171 24 45 chr11 5011774 5011835 -143771637 - L1MA8 LINE L1 -1691 6019 5958 * 4828 200 36 15 chr11 5011831 5012529 -143770943 - L1MA8 LINE L1 -1923 5642 4905 2621 22 0 38 chr11 5012529 5012843 -143770629 - AluYb8 SINE Alu -7 311 10 4828 200 36 15 chr11 5012843 5013374 -143770098 - L1MA8 LINE L1 -2660 4905 4387 2564 234 16 61 chr11 5013370 5014448 -143769024 - L1MA8 LINE L1 -4594 2971 2008 * 1312 229 32 12 chr11 5014649 5015063 -143768409 - L1MA8 LINE L1 -6685 804 84 184 388 17 17 chr11 5015756 5015872 -143767600 - L2 LINE L2 -184 3088 2973 1845 158 0 34 chr11 5016103 5016426 -143767046 + AluJb SINE Alu 1 312 0 351 0 0 0 chr11 5016908 5016947 -143766525 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 342 146 45 chr11 5019385 5020051 -143763421 + L2 LINE L2 2026 2758 -556 195 287 20 99 chr11 5020086 5020187 -143763285 + L2 LINE L2 3145 3237 -35 287 115 39 0 chr11 5020206 5020258 -143763214 + GA-rich Low_complexity Low_complexity 3 56 0 180 318 47 9 chr11 5020264 5020371 -143763101 + L2 LINE L2 2798 2908 -406 184 337 54 43 chr11 5020717 5020809 -143762663 - L2 LINE L2 -166 3106 3014 494 337 168 28 chr11 5021072 5021917 -143761555 - L2 LINE L2 -553 2761 1799 287 374 133 29 chr11 5023136 5023550 -143759922 + L3 LINE CR1 935 1391 -186 21 0 0 0 chr11 5024248 5024269 -143759203 + AT_rich Low_complexity Low_complexity 1 21 0 554 250 47 26 chr11 5024570 5024762 -143758710 + MLT1J LTR MaLR 316 511 0 293 369 108 0 chr11 5024998 5025212 -143758260 - L2 LINE L2 -654 2660 2424 339 340 46 92 chr11 5025242 5025548 -143757924 - L2 LINE L2 -2042 1272 981 5288 128 16 16 chr11 5025824 5026871 -143756601 + L1PA15 LINE L1 5119 6165 0 480 280 25 30 chr11 5027088 5027288 -143756184 - L1PA12 LINE L1 -5198 2383 2185 1318 313 19 30 chr11 5027745 5028339 -143755133 - L1PA12 LINE L1 -6200 1374 788 192 152 0 0 chr11 5028538 5028571 -143754901 + T-rich Low_complexity Low_complexity 1 33 0 1409 227 35 28 chr11 5028575 5029362 -143754110 + L1ME LINE L1 4866 5662 -504 6180 30 0 0 chr11 5029417 5030178 -143753294 - L1PA4 LINE L1 0 6155 5395 3442 25 0 9 chr11 5030177 5030626 -143752846 + L1PA4 LINE L1 4953 5397 -749 * 355 270 40 69 chr11 5030631 5030957 -143752515 - L1M4 LINE L1 -1037 5109 4797 8750 121 8 7 chr11 5030960 5032246 -143751226 + HSMAR1 DNA Mariner 1 1287 0 15841 179 19 9 chr11 5032247 5036499 -143746973 - L1PA14 LINE L1 -1 6160 1890 7508 137 4 2 chr11 5036686 5037985 -143745487 + L1P LINE L1 2786 4086 -2060 664 80 44 0 chr11 5037981 5038043 -143745429 + L1PA2 LINE L1 5319 5377 -797 * 17200 30 1 0 chr11 5038043 5039457 -143744015 + L1PA2 LINE L1 3305 4716 -1439 2825 7 0 0 chr11 5039457 5039764 -143743708 + AluYb8 SINE Alu 1 307 -11 17200 30 1 0 chr11 5039764 5041211 -143742261 + L1PA2 LINE L1 4716 6155 0 664 80 44 0 chr11 5041211 5041261 -143742211 + L1PA2 LINE L1 5377 5436 -738 290 342 0 9 chr11 5041569 5041680 -143741792 - ERVL LTR ERVL -664 5100 4991 366 324 106 32 chr11 5042508 5042943 -143740529 - L2 LINE L2 -1277 2037 1571 407 311 52 46 chr11 5043630 5043958 -143739514 + L1M4 LINE L1 4028 4357 -1789 329 326 0 0 chr11 5044369 5044458 -143739014 - L2 LINE L2 -16 3297 3209 5879 223 37 23 chr11 5044514 5048599 -143734873 + L1PBa LINE L1 3 3194 -3668 270 208 75 50 chr11 5048641 5048761 -143734711 + L1MA9 LINE L1 6150 6272 -40 432 55 0 0 chr11 5048778 5048833 -143734639 + (CA)n Simple_repeat Simple_repeat 2 56 0 742 314 147 0 chr11 5048847 5049166 -143734306 - LTR33 LTR ERVL -153 368 3 21 0 0 0 chr11 5050714 5050735 -143732737 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5050846 5050870 -143732602 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 5050991 5051024 -143732448 + AT_rich Low_complexity Low_complexity 1 33 0 2030 103 9 59 chr11 5051061 5051382 -143732090 + AluSc SINE Alu 1 305 -4 2048 138 13 3 chr11 5051469 5051767 -143731705 + AluJb SINE Alu 1 301 -11 742 89 45 0 chr11 5053141 5053253 -143730219 - L1PB1 LINE L1 -6 6145 6029 37 23 0 0 chr11 5053439 5053483 -143729989 + AT_rich Low_complexity Low_complexity 1 44 0 313 289 63 11 chr11 5053631 5053821 -143729651 + L1ME LINE L1 5556 5755 -366 4994 112 29 115 chr11 5054008 5054114 -143729358 + L1MA4 LINE L1 5211 5324 -976 2013 80 109 0 chr11 5054114 5054388 -143729084 + AluY SINE Alu 1 304 -7 4994 112 29 115 chr11 5054388 5055101 -143728371 + L1MA4 LINE L1 5324 5901 -399 1979 60 0 0 chr11 5055101 5055333 -143728139 + AluSx SINE Alu 1 232 -80 4994 112 29 115 chr11 5055333 5055702 -143727770 + L1MA4 LINE L1 5901 6300 0 207 0 0 0 chr11 5055860 5055883 -143727589 + (TA)n Simple_repeat Simple_repeat 2 24 0 31 44 0 0 chr11 5056042 5056087 -143727385 + AT_rich Low_complexity Low_complexity 1 45 0 184 205 0 0 chr11 5056462 5056501 -143726971 - L2 LINE L2 -981 2333 2295 1944 172 3 0 chr11 5056646 5056949 -143726523 - AluSx SINE Alu -8 304 1 360 292 77 0 chr11 5058230 5058425 -143725047 + L1ME LINE L1 5520 5729 -392 22 70 0 0 chr11 5058480 5058523 -143724949 + AT_rich Low_complexity Low_complexity 1 43 0 674 305 14 9 chr11 5058573 5058796 -143724676 - MIR SINE MIR -2 260 37 217 276 26 97 chr11 5058824 5058981 -143724491 + MIR SINE MIR 58 202 -60 180 294 119 55 chr11 5059120 5059229 -143724243 + L2 LINE L2 3175 3290 -23 228 285 106 80 chr11 5059746 5059897 -143723575 - MIR SINE MIR -71 191 37 243 88 0 0 chr11 5059963 5059997 -143723475 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1276 255 96 43 chr11 5060783 5061365 -143722107 + MLT1G LTR MaLR 17 590 0 1214 227 148 43 chr11 5061560 5062027 -143721445 - LTR41 LTR ERVL -1 772 257 674 309 114 32 chr11 5062083 5062584 -143720888 + L1M4 LINE L1 8 549 -5993 950 185 50 37 chr11 5062591 5062889 -143720583 + L1M4 LINE L1 1029 1330 -5212 410 212 51 0 chr11 5062903 5063021 -143720451 + L1M4 LINE L1 1627 1750 -4896 1135 236 19 33 chr11 5063030 5063390 -143720082 + L1M4 LINE L1 1706 2060 -4586 309 214 71 8 chr11 5063408 5063534 -143719938 + L1M4 LINE L1 2242 2375 -4271 358 227 0 0 chr11 5063535 5063601 -143719871 - MER2 DNA MER2_type 0 345 280 648 208 66 9 chr11 5063647 5063891 -143719581 + L1M4 LINE L1 2567 2823 -3821 1277 214 18 25 chr11 5063927 5064203 -143719269 + Tigger7 DNA MER2_type 1 274 -459 383 224 0 47 chr11 5064203 5064288 -143719184 + Tigger7 DNA MER2_type 2395 2475 -12 713 204 28 21 chr11 5064294 5064633 -143718839 + L1M4 LINE L1 2828 3275 -3369 8399 215 18 31 chr11 5064633 5067604 -143715868 + L1P3 LINE L1 2 3083 -3378 3978 13 0 0 chr11 5067707 5068155 -143715317 + L1PA2 LINE L1 5698 6145 -10 709 295 85 9 chr11 5069240 5069464 -143714008 + MIR SINE MIR 9 249 -13 382 302 140 4 chr11 5069500 5069735 -143713737 + L1ME LINE L1 5027 5293 -853 680 276 19 31 chr11 5069880 5070137 -143713335 + L1ME LINE L1 5477 5730 -432 1530 202 3 40 chr11 5070741 5071112 -143712360 - MLT1A2 LTR MaLR -4 370 14 615 247 82 0 chr11 5073163 5073321 -143710151 + MIR SINE MIR 12 182 -80 303 259 62 0 chr11 5073514 5073595 -143709877 + L2 LINE L2 3147 3232 -40 1860 163 3 7 chr11 5073907 5074201 -143709271 - AluJo SINE Alu -19 293 1 266 324 0 0 chr11 5074473 5074547 -143708925 - L2 LINE L2 -11 3302 3229 195 258 161 39 chr11 5075458 5075613 -143707859 - MIR3 SINE MIR -21 187 14 450 94 47 0 chr11 5078564 5078628 -143704844 + AluJ/FRAM SINE Alu 221 287 -25 24 32 0 0 chr11 5078696 5078727 -143704745 + AT_rich Low_complexity Low_complexity 1 31 0 993 238 82 13 chr11 5079091 5079394 -143704078 + MER46C DNA MER2_type 2 325 -13 336 213 0 0 chr11 5079946 5080021 -143703451 - L1PB4 LINE L1 0 6156 6082 2250 116 3 0 chr11 5080154 5080457 -143703015 + AluSx SINE Alu 1 304 -8 274 284 9 17 chr11 5080549 5080665 -143702807 + L1M4 LINE L1 4491 4605 -1541 26 30 0 0 chr11 5080775 5080808 -143702664 + AT_rich Low_complexity Low_complexity 1 33 0 246 303 67 6 chr11 5081738 5081916 -143701556 + HAL1b LINE L1 433 621 -727 245 257 29 29 chr11 5083854 5083924 -143699548 + MIR SINE MIR 12 81 -127 799 238 72 25 chr11 5083969 5084201 -143699271 - MIR SINE MIR -31 231 2 2273 108 10 0 chr11 5084528 5084835 -143698637 + AluSx SINE Alu 1 310 -2 1958 138 3 3 chr11 5085383 5085707 -143697765 + AluSx SINE Alu 1 312 0 1986 91 14 11 chr11 5085791 5086066 -143697406 + AluSq SINE Alu 2 277 -36 879 71 58 0 chr11 5086066 5086221 -143697251 + GA-rich Low_complexity Low_complexity 2 165 0 285 300 22 0 chr11 5086409 5086499 -143696973 - L2 LINE L2 -1609 1705 1614 1247 155 18 10 chr11 5086645 5087067 -143696405 - LTR54 LTR ERV1 0 510 2 1720 239 68 42 chr11 5087068 5087320 -143696152 - LTR49-int LTR ERV1 -393 7144 6900 2327 138 23 0 chr11 5087320 5087674 -143695798 + THE1B LTR MaLR 1 362 -2 1720 239 68 42 chr11 5087674 5087939 -143695533 - LTR49-int LTR ERV1 -637 6900 6614 4396 229 52 62 chr11 5088032 5088240 -143695232 - LTR49-int LTR ERV1 -697 4174 3965 1648 214 0 14 chr11 5088240 5088535 -143694937 + AluJo SINE Alu 1 291 -21 4396 229 52 62 chr11 5088535 5090025 -143693447 - LTR49-int LTR ERV1 -906 3965 2493 393 261 82 31 chr11 5090028 5090360 -143693112 - LTR49-int LTR ERV1 -2129 4202 2455 2583 66 0 41 chr11 5090397 5090761 -143692711 + L1PA6 LINE L1 5805 6153 -1 2051 197 15 6 chr11 5090864 5091641 -143691831 + L1M2 LINE L1 4877 5660 -652 7458 161 31 27 chr11 5091642 5093184 -143690288 + L1M4c LINE L1 175 1722 -4662 1694 136 12 37 chr11 5093182 5093506 -143689966 + L1 LINE L1 3524 3839 -2307 * 1523 100 56 0 chr11 5093508 5093739 -143689733 + L1PA16 LINE L1 5915 6158 -8 24 0 0 0 chr11 5093749 5093773 -143689699 + AT_rich Low_complexity Low_complexity 1 24 0 1102 135 0 2 chr11 5094057 5094324 -143689148 + AluSx SINE Alu 1 311 -1 1191 234 80 13 chr11 5094324 5094854 -143688618 + L1M1 LINE L1 3530 4151 -3414 385 254 64 0 chr11 5094878 5094988 -143688484 + L1M1 LINE L1 4525 4641 -2924 24 0 0 0 chr11 5094994 5095018 -143688454 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 5095107 5095128 -143688344 + AT_rich Low_complexity Low_complexity 1 21 0 241 341 99 0 chr11 5095352 5095443 -143688029 - L2 LINE L2 -51 3221 3122 1885 160 10 3 chr11 5096216 5096509 -143686963 - AluSx SINE Alu -17 295 1 371 273 87 17 chr11 5097278 5097486 -143685986 - MLT1I LTR MaLR -123 327 93 40466 35 24 1 chr11 5097920 5103717 -143679755 + L1PA3 LINE L1 13 5942 -213 291 306 162 20 chr11 5103874 5104171 -143679301 + MLT1J2 LTR MaLR 67 405 -45 544 269 7 13 chr11 5104217 5104366 -143679106 - L2 LINE L2 -967 2347 2200 2276 119 3 0 chr11 5104602 5104912 -143678560 - AluSx SINE Alu -1 311 1 1897 152 0 30 chr11 5105025 5105322 -143678150 - AluSx SINE Alu -14 298 11 429 328 83 23 chr11 5105550 5105795 -143677677 - MIR SINE MIR 0 262 8 280 335 68 58 chr11 5107010 5107303 -143676169 + L2 LINE L2 2535 2830 -484 232 313 167 30 chr11 5107505 5107703 -143675769 + MIR SINE MIR 35 259 -3 330 312 25 33 chr11 5107709 5107956 -143675516 + L1M3 LINE L1 4793 5039 -1107 247 254 54 23 chr11 5108194 5108324 -143675148 + L1M3 LINE L1 5314 5447 -724 259 319 48 18 chr11 5108366 5108532 -143674940 + L1ME LINE L1 5530 5700 -421 2049 129 4 0 chr11 5108643 5108969 -143674503 - AluSx SINE Alu 0 329 3 808 194 37 42 chr11 5109223 5109439 -143674033 - MER96B DNA MER1_type? -1 416 202 38 66 0 28 chr11 5109471 5109577 -143673895 + AT_rich Low_complexity Low_complexity 1 103 0 281 317 110 0 chr11 5110419 5110501 -143672971 - L2 LINE L2 -36 3236 3146 615 290 60 10 chr11 5110603 5110803 -143672669 + MIR SINE MIR 50 259 -3 9354 161 117 17 chr11 5110803 5112585 -143670887 + L1MA3 LINE L1 13 1972 -5593 648 116 24 109 chr11 5112614 5112693 -143670779 - MER41A-int LTR ERV1 -3691 2255 2171 2171 115 0 13 chr11 5112693 5112997 -143670475 - AluSx SINE Alu -12 300 1 648 116 24 109 chr11 5112997 5113113 -143670359 - MER41A-int LTR ERV1 -3775 2171 1740 * 714 111 133 7 chr11 5113109 5113244 -143670228 - MER41A-int LTR ERV1 -3929 2017 1866 * 1932 175 59 10 chr11 5113243 5113631 -143669841 - MER41A-int LTR ERV1 -5166 2371 1965 * 4754 136 53 30 chr11 5113630 5114837 -143668635 - MER41A-int LTR ERV1 -4627 1319 1 277 104 338 13 chr11 5114846 5114923 -143668549 - MER41A-int LTR ERV1 -5844 102 1 4193 70 3 26 chr11 5115007 5115574 -143667898 - MER41A LTR ERV1 0 554 1 1258 128 68 16 chr11 5115574 5115823 -143667649 + L1MA3 LINE L1 2828 3089 -4476 1612 160 36 14 chr11 5115832 5116169 -143667303 - MER4A LTR ERV1 -1 663 261 501 163 10 10 chr11 5116169 5116267 -143667205 - MER4A LTR ERV1 -566 98 1 14205 150 39 18 chr11 5116269 5116501 -143666971 + L1MA3 LINE L1 3096 3322 -4401 2150 116 0 3 chr11 5116501 5116821 -143666651 - AluSx SINE Alu 0 319 1 14205 150 39 18 chr11 5116821 5120967 -143662505 + L1MA3 LINE L1 3322 7571 -152 1965 147 7 3 chr11 5120967 5121267 -143662205 + AluSx SINE Alu 1 301 -11 14205 150 39 18 chr11 5121267 5121312 -143662160 + L1MA3 LINE L1 7571 7614 -109 24 0 0 0 chr11 5121312 5121336 -143662136 + AT_rich Low_complexity Low_complexity 1 24 0 415 343 32 32 chr11 5122010 5122226 -143661246 - MIR SINE MIR -28 234 19 276 372 16 0 chr11 5122396 5122517 -143660955 - L2 LINE L2 -995 2319 2197 294 291 45 18 chr11 5122904 5123014 -143660458 - L2 LINE L2 -33 3280 3168 21 0 0 0 chr11 5123298 5123319 -143660153 + AT_rich Low_complexity Low_complexity 1 21 0 210 330 0 11 chr11 5123471 5123559 -143659913 + GA-rich Low_complexity Low_complexity 3 89 0 1807 143 3 18 chr11 5126038 5126324 -143657148 + AluJo SINE Alu 1 282 -30 235 293 93 7 chr11 5126329 5126469 -143657003 + L1MC4 LINE L1 6613 6764 -1278 500 239 35 0 chr11 5127113 5127226 -143656246 + MIR SINE MIR 32 148 -114 1408 6 0 0 chr11 5127229 5127385 -143656087 + L1HS LINE L1 6000 6155 0 189 94 0 0 chr11 5127387 5127419 -143656053 + (A)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 5127434 5127455 -143656017 + (A)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr11 5127880 5127911 -143655561 + AT_rich Low_complexity Low_complexity 1 31 0 5996 30 1 1 chr11 5127925 5128588 -143654884 + L1PA4 LINE L1 5474 6136 -19 882 271 18 5 chr11 5128900 5129118 -143654354 - MIR SINE MIR -1 261 41 2252 108 0 0 chr11 5129410 5129705 -143653767 + AluSg SINE Alu 2 296 -14 830 268 91 40 chr11 5129705 5130101 -143653371 - LTR33 LTR ERVL -59 462 47 374 238 133 9 chr11 5130140 5130245 -143653227 + L2 LINE L2 1121 1238 -2076 261 348 52 9 chr11 5130352 5130467 -143653005 - L2 LINE L2 -4 3309 3190 26 0 0 0 chr11 5130635 5130661 -143652811 + AT_rich Low_complexity Low_complexity 1 26 0 493 108 15 0 chr11 5130921 5130986 -143652486 + AluJ/FLAM SINE Alu 2 67 -245 836 112 0 0 chr11 5130988 5131104 -143652368 + AluSq SINE Alu 102 217 -96 820 169 0 0 chr11 5131371 5131525 -143651947 + L1HS LINE L1 6000 6153 -2 40 0 0 0 chr11 5131525 5131565 -143651907 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr11 5131575 5131597 -143651875 + (A)n Simple_repeat Simple_repeat 1 22 0 190 260 91 0 chr11 5131597 5131674 -143651798 + MIR SINE MIR 137 220 -42 186 43 0 0 chr11 5131694 5131717 -143651755 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1723 147 38 12 chr11 5132915 5133234 -143650238 - L1MA8 LINE L1 -4 6287 5961 234 167 0 0 chr11 5133458 5133518 -143649954 + A-rich Low_complexity Low_complexity 1 60 0 235 265 0 0 chr11 5133601 5133650 -143649822 + L2 LINE L2 3210 3258 -14 647 242 0 18 chr11 5134566 5134731 -143648741 - MIR SINE MIR 0 262 101 4220 173 18 31 chr11 5134945 5135762 -143647710 + L1MB3 LINE L1 5375 6181 -2 1581 219 39 8 chr11 5135909 5136342 -143647130 + L1ME2 LINE L1 5628 6086 -76 673 265 196 3 chr11 5136350 5136656 -143646816 + L1MD1 LINE L1 2034 2398 -4142 1928 141 7 10 chr11 5136660 5136964 -143646508 + MER1B DNA MER1_type 37 339 0 1192 217 38 9 chr11 5136964 5137506 -143645966 + L1MD1 LINE L1 2391 2943 -3597 9623 88 19 1 chr11 5137562 5138850 -143644622 + L1P LINE L1 11 1321 -4825 7948 36 0 2 chr11 5138850 5140371 -143643101 + L1PA5 LINE L1 4632 6150 -4 4232 230 83 15 chr11 5140424 5141755 -143641717 + L1MD1 LINE L1 3157 4578 -1962 2912 187 64 40 chr11 5141754 5141803 -143641669 + L1MD1 LINE L1 5928 5974 -662 * 2036 163 54 11 chr11 5141803 5142153 -143641319 - MLT1A1 LTR MaLR 0 365 1 2912 187 64 40 chr11 5142153 5142386 -143641086 + L1MD1 LINE L1 5974 6200 -436 2230 101 7 3 chr11 5142386 5142684 -143640788 + AluSq SINE Alu 1 299 -14 2912 187 64 40 chr11 5142684 5143083 -143640389 + L1MD1 LINE L1 6200 6627 -9 1934 191 55 0 chr11 5143103 5143433 -143640039 + MER7A DNA MER2_type 1 346 0 182 255 78 0 chr11 5143501 5143552 -143639920 + L2 LINE L2 3258 3312 -1 31 76 0 0 chr11 5143564 5143630 -143639842 + AT_rich Low_complexity Low_complexity 1 66 0 43264 38 26 2 chr11 5143761 5149013 -143634459 + L1P LINE L1 5 5382 -764 213 247 136 25 chr11 5151182 5151263 -143632209 + L2 LINE L2 2969 3058 -214 274 106 0 21 chr11 5151391 5151438 -143632034 + MIR SINE MIR 217 262 0 203 133 0 0 chr11 5151854 5151884 -143631588 + (TG)n Simple_repeat Simple_repeat 2 31 0 2199 126 35 20 chr11 5152024 5152366 -143631106 + MER7A DNA MER2_type 1 345 -1 931 180 22 28 chr11 5152397 5152575 -143630897 - MER5B DNA MER1_type 0 178 2 454 287 61 29 chr11 5153287 5153507 -143629965 - MIR SINE MIR 0 262 38 382 184 0 26 chr11 5153990 5154066 -143629406 + L1PB4 LINE L1 6083 6156 0 1974 144 3 3 chr11 5154537 5154835 -143628637 - AluSx SINE Alu -14 298 1 407 271 53 33 chr11 5154845 5154996 -143628476 - MIR SINE MIR -43 219 66 1987 128 0 0 chr11 5155057 5155339 -143628133 + AluSx SINE Alu 5 286 -26 32 0 0 0 chr11 5155339 5155371 -143628101 + AT_rich Low_complexity Low_complexity 1 32 0 3839 48 119 8 chr11 5155811 5156313 -143627159 + LTR6B LTR ERV1 1 558 0 473 310 39 0 chr11 5156365 5156520 -143626952 - L2 LINE L2 -312 3001 2841 542 167 0 0 chr11 5156522 5156600 -143626872 + AluS SINE Alu 2 79 -233 1256 348 67 33 chr11 5156765 5157492 -143625980 + L2 LINE L2 1947 2698 -616 345 47 0 0 chr11 5157766 5157809 -143625663 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr11 5157809 5157841 -143625631 + AT_rich Low_complexity Low_complexity 1 32 0 504 263 89 93 chr11 5157891 5158138 -143625334 + L2 LINE L2 3027 3272 0 211 318 196 8 chr11 5158263 5158508 -143624964 + L2 LINE L2 2940 3230 -42 2051 136 3 3 chr11 5159214 5159508 -143623964 + AluSx SINE Alu 19 312 0 1752 194 115 3 chr11 5159746 5160102 -143623370 + MSTD LTR MaLR 1 396 0 223 244 0 0 chr11 5160411 5160456 -143623016 + G-rich Low_complexity Low_complexity 2 46 0 2215 128 0 10 chr11 5161141 5161454 -143622018 - AluSx SINE Alu -2 310 1 2298 30 0 0 chr11 5161683 5161948 -143621524 - AluY SINE Alu -46 265 1 225 132 0 0 chr11 5162134 5162172 -143621300 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 417 158 142 17 chr11 5162527 5162647 -143620825 + LTR37A LTR ERV1 13 147 -279 466 88 38 0 chr11 5164292 5164372 -143619100 + CT-rich Low_complexity Low_complexity 2 84 0 648 229 24 24 chr11 5165033 5165199 -143618273 + MER31-int LTR ERV1 3817 3982 -954 757 152 0 0 chr11 5165199 5165304 -143618168 + AluSq/x SINE Alu 2 106 -207 867 223 48 65 chr11 5165323 5165615 -143617857 + MER31-int LTR ERV1 3973 4259 -677 1686 201 84 15 chr11 5165615 5166009 -143617463 + LTR37A LTR ERV1 4 424 -2 1887 92 0 8 chr11 5167728 5167977 -143615495 - AluSq SINE Alu -66 247 1 401 283 8 17 chr11 5168307 5168427 -143615045 + L2 LINE L2 2587 2705 -609 253 255 28 78 chr11 5168469 5168610 -143614862 + L1MEd LINE L1 88 221 -5984 658 236 112 43 chr11 5168789 5169042 -143614430 + MLT1E LTR MaLR 54 319 -248 3831 86 67 8 chr11 5169063 5169586 -143613886 + MER41A LTR ERV1 1 554 0 4940 124 46 10 chr11 5169586 5170481 -143612991 + MER41A-int LTR ERV1 1 1481 -5241 1118 126 0 6 chr11 5170463 5170630 -143612842 + MER41A-int LTR ERV1 929 1094 -4852 * 306 0 0 0 chr11 5170633 5170667 -143612805 + (TG)n Simple_repeat Simple_repeat 1 34 0 12460 101 28 28 chr11 5170667 5173618 -143609854 + MER41A-int LTR ERV1 1360 5942 -4 4339 81 0 4 chr11 5173620 5174176 -143609296 + MER41A LTR ERV1 1 554 0 248 272 64 0 chr11 5174178 5174303 -143609169 + L1MEd LINE L1 1363 1495 -4901 310 282 0 0 chr11 5174332 5174402 -143609070 - MER5A DNA MER1_type -80 105 29 649 140 0 10 chr11 5175311 5175411 -143608061 - MER4A LTR ERV1 -564 100 2 224 274 181 61 chr11 5175411 5175754 -143607718 + L2 LINE L2 2918 3301 -12 551 312 132 0 chr11 5175872 5176077 -143607395 + MIR SINE MIR 31 262 0 309 169 0 99 chr11 5176179 5176250 -143607222 - L1MC4 LINE L1 -1339 6703 6640 * 315 203 99 2 chr11 5176246 5176333 -143607139 + L1M LINE L1 5266 5346 -828 397 246 205 0 chr11 5177138 5177260 -143606212 + MER5A DNA MER1_type 43 189 0 305 243 27 14 chr11 5177994 5178068 -143605404 + MIR SINE MIR 2 76 -186 12386 141 42 28 chr11 5178080 5178683 -143604789 - L1MA3 LINE L1 0 6305 5712 2318 84 7 0 chr11 5178683 5178993 -143604479 - AluSx SINE Alu 0 312 1 12386 141 42 28 chr11 5178993 5181227 -143602245 - L1MA3 LINE L1 -593 5712 3413 2308 102 0 0 chr11 5181227 5181540 -143601932 - AluSp SINE Alu 0 313 1 12386 141 42 28 chr11 5181540 5182165 -143601307 - L1MA3 LINE L1 -2892 3413 2798 442 298 88 18 chr11 5182363 5182534 -143600938 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 5182549 5182745 -143600727 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 5183497 5183685 -143599787 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 5183751 5183828 -143599644 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 5187217 5187463 -143596009 + L2 LINE L2 1727 2004 -1310 397 249 112 81 chr11 5187933 5188130 -143595342 - L2 LINE L2 0 3272 3070 1536 165 38 48 chr11 5188435 5188514 -143594958 + Tigger3(Golem) DNA MER2_type 1 79 -1152 1750 177 3 10 chr11 5188514 5188824 -143594648 + AluJo SINE Alu 1 308 -4 1536 165 38 48 chr11 5188824 5189035 -143594437 + Tigger3(Golem) DNA MER2_type 79 288 -943 251 264 27 55 chr11 5189199 5189290 -143594182 - MIR SINE MIR -109 99 16 2185 100 10 0 chr11 5189344 5189653 -143593819 - AluSp SINE Alu -1 312 1 496 342 25 20 chr11 5189685 5189884 -143593588 + L2 LINE L2 3069 3268 -4 1839 121 78 14 chr11 5190735 5191081 -143592391 + L1MC2 LINE L1 5977 6344 0 183 80 0 0 chr11 5191111 5191136 -143592336 + (TG)n Simple_repeat Simple_repeat 2 26 0 1733 168 7 7 chr11 5192089 5192386 -143591086 + AluJb SINE Alu 1 297 -15 237 278 24 32 chr11 5192863 5192989 -143590483 + C-rich Low_complexity Low_complexity 3 127 0 375 23 0 0 chr11 5193153 5193197 -143590275 + (GA)n Simple_repeat Simple_repeat 1 44 0 1849 284 2 2 chr11 5194781 5195200 -143588272 + LTR16A LTR ERVL 24 442 -8 311 374 168 3 chr11 5195204 5195514 -143587958 + L2 LINE L2 2482 2842 -472 288 154 0 0 chr11 5195601 5195653 -143587819 + T-rich Low_complexity Low_complexity 1 52 0 258 305 102 17 chr11 5195675 5195793 -143587679 + L2 LINE L2 2931 3058 -214 1497 214 123 106 chr11 5195801 5196441 -143587031 + MLT1E2 LTR MaLR 4 626 0 498 267 58 49 chr11 5196539 5196764 -143586708 - L2 LINE L2 -645 2669 2443 650 237 38 38 chr11 5196799 5197010 -143586462 - MIR SINE MIR -44 218 8 233 304 82 38 chr11 5197028 5197129 -143586343 + L2 LINE L2 1266 1361 -1953 267 54 0 0 chr11 5197129 5197166 -143586306 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 304 82 38 chr11 5197166 5197248 -143586224 + L2 LINE L2 1361 1457 -1857 912 291 188 9 chr11 5197248 5197816 -143585656 - L2 LINE L2 -956 2358 1689 308 82 0 20 chr11 5197826 5197875 -143585597 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 218 368 69 10 chr11 5197877 5198081 -143585391 - L2 LINE L2 -1637 1677 1462 669 294 117 35 chr11 5198082 5198477 -143584995 + MLT1J LTR MaLR 85 511 0 344 348 176 27 chr11 5198484 5198560 -143584912 - L2 LINE L2 -1855 1459 1396 207 69 0 0 chr11 5198560 5198589 -143584883 + (TG)n Simple_repeat Simple_repeat 1 29 0 344 348 176 27 chr11 5198589 5198848 -143584624 - L2 LINE L2 -1918 1396 1074 1135 162 65 148 chr11 5198926 5199278 -143584194 + MLT1B LTR MaLR 68 390 0 213 189 57 38 chr11 5199874 5199927 -143583545 - MER5A DNA MER1_type -78 111 58 2625 17 0 0 chr11 5201703 5202003 -143581469 - AluYa5 SINE Alu -11 300 1 463 250 159 6 chr11 5202794 5202970 -143580502 + MIR SINE MIR 47 249 -13 319 220 28 73 chr11 5202991 5203028 -143580444 + MIR SINE MIR 109 146 -116 188 86 29 0 chr11 5203028 5203063 -143580409 + (CAT)n Simple_repeat Simple_repeat 1 36 0 319 220 28 73 chr11 5203063 5203134 -143580338 + MIR SINE MIR 146 212 -50 4067 71 28 33 chr11 5203244 5203604 -143579868 - L1PB2 LINE L1 -5 6146 5789 2019 137 0 3 chr11 5203604 5203917 -143579555 - AluSx SINE Alu 0 312 1 4067 71 28 33 chr11 5203917 5204135 -143579337 - L1PB2 LINE L1 -362 5789 5571 1309 209 65 69 chr11 5204523 5205001 -143578471 + MLT1E2 LTR MaLR 105 606 -20 273 29 0 0 chr11 5205001 5205035 -143578437 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 209 65 69 chr11 5205035 5205056 -143578416 + MLT1E2 LTR MaLR 606 626 0 1138 193 0 5 chr11 5205226 5205428 -143578044 + AluJb SINE Alu 1 201 -111 2104 86 17 0 chr11 5205534 5205825 -143577647 - AluY SINE Alu -15 296 1 346 292 77 15 chr11 5206588 5206718 -143576754 - L2 LINE L2 -10 3303 3166 405 0 0 0 chr11 5207962 5208007 -143575465 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 158 70 2 chr11 5209002 5209402 -143574070 + MSTA LTR MaLR 2 428 0 284 383 101 15 chr11 5209446 5209772 -143573700 - L2 LINE L2 -337 2977 2624 599 296 40 6 chr11 5209792 5209968 -143573504 - MIR SINE MIR -6 256 75 814 233 33 6 chr11 5210331 5210511 -143572961 + MIR SINE MIR 78 262 0 213 351 13 0 chr11 5213826 5213903 -143569569 - L2 LINE L2 0 3272 3195 550 339 60 45 chr11 5214257 5214790 -143568682 - L2 LINE L2 -35 3237 2702 302 358 61 14 chr11 5215136 5215284 -143568188 + L2 LINE L2 2252 2406 -908 1564 209 126 26 chr11 5215400 5215830 -143567642 + MLT1G LTR MaLR 118 590 0 1106 188 27 5 chr11 5215830 5216053 -143567419 - L1ME3A LINE L1 -23 6147 5920 285 360 96 13 chr11 5216064 5216453 -143567019 + L2 LINE L2 2461 2966 -348 750 179 31 0 chr11 5216462 5216624 -143566848 - L1MD3 LINE L1 0 7995 7829 2481 65 0 0 chr11 5216624 5216934 -143566538 - AluSg SINE Alu 0 310 1 219 411 65 0 chr11 5216959 5217083 -143566389 + L2 LINE L2 2952 3083 -189 22 70 0 0 chr11 5217912 5217955 -143565517 + GC_rich Low_complexity Low_complexity 1 43 0 184 239 0 43 chr11 5218584 5218630 -143564842 - L2 LINE L2 -95 3218 3175 362 269 30 2 chr11 5219010 5219128 -143564344 - L1ME1 LINE L1 -44 6122 5992 24 0 0 0 chr11 5219773 5219797 -143563675 + AT_rich Low_complexity Low_complexity 1 24 0 194 231 292 11 chr11 5219983 5220075 -143563397 - MIR SINE MIR -61 147 30 244 274 0 0 chr11 5220532 5220583 -143562889 - L2 LINE L2 -15 3257 3207 258 255 74 47 chr11 5220595 5220744 -143562728 - L2 LINE L2 -1 3312 3160 1455 154 36 121 chr11 5220791 5221121 -143562351 + AluSx SINE Alu 1 302 0 338 335 182 36 chr11 5221130 5221850 -143561622 + L2 LINE L2 2210 3035 -237 510 261 60 22 chr11 5223292 5223426 -143560046 - MIR SINE MIR -123 139 1 626 217 43 14 chr11 5223508 5223646 -143559826 - LTR33 LTR ERVL -4 517 376 2179 98 3 10 chr11 5224232 5224528 -143558944 - AluSp SINE Alu -19 294 1 676 348 65 19 chr11 5224644 5225121 -143558351 + L2 LINE L2 1931 2429 -885 698 249 105 5 chr11 5225212 5225421 -143558051 + MIR SINE MIR 32 261 -1 211 357 101 40 chr11 5225665 5226250 -143557222 + L2 LINE L2 2608 3232 -40 207 100 0 0 chr11 5226935 5226965 -143556507 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 913 259 250 26 chr11 5226974 5227842 -143555630 - L2 LINE L2 0 3313 2245 24 32 0 0 chr11 5229301 5229332 -143554140 + AT_rich Low_complexity Low_complexity 1 31 0 889 286 186 12 chr11 5230635 5231100 -143552372 - L2 LINE L2 -2 3311 2770 255 294 64 97 chr11 5231445 5231634 -143551838 + MER5A DNA MER1_type 1 189 0 877 261 111 59 chr11 5232096 5232572 -143550900 - MLT1E2 LTR MaLR 0 626 5 227 263 0 38 chr11 5234805 5234885 -143548587 + G-rich Low_complexity Low_complexity 6 82 0 560 249 159 5 chr11 5237246 5237435 -143546037 - MIR SINE MIR -17 245 28 257 293 13 0 chr11 5238453 5238528 -143544944 - L2 LINE L2 -228 3044 2969 261 0 0 0 chr11 5238530 5238559 -143544913 + (T)n Simple_repeat Simple_repeat 1 29 0 268 388 50 16 chr11 5238972 5239093 -143544379 - L2 LINE L2 -5 3267 3143 220 280 105 21 chr11 5243267 5243410 -143540062 - L2 LINE L2 -463 2851 2697 198 0 0 0 chr11 5243414 5243436 -143540036 + (T)n Simple_repeat Simple_repeat 1 22 0 10560 25 15 1 chr11 5293502 5294764 -143488708 + L1P LINE L1 3529 4808 -1338 1031 113 11 13 chr11 5294868 5296343 -143487129 + HSATII Satellite Satellite 1 1471 -1 785 100 0 21 chr11 5296366 5296506 -143486966 + HSATII Satellite Satellite 17 153 -17 911 121 23 14 chr11 5296522 5297010 -143486462 + HSATII Satellite Satellite 1 492 0 980 112 10 12 chr11 5297033 5298238 -143485234 + HSATII Satellite Satellite 1 1202 -27 998 108 8 14 chr11 5298265 5300399 -143483073 + HSATII Satellite Satellite 1 2120 -16 965 129 22 9 chr11 5300414 5300703 -143482769 + HSATII Satellite Satellite 1 292 -1 926 123 10 16 chr11 5300726 5302167 -143481305 + HSATII Satellite Satellite 1 1432 -1 1064 110 11 12 chr11 5302197 5306731 -143476741 + HSATII Satellite Satellite 1 4528 -23 941 120 15 14 chr11 5306746 5307377 -143476095 + HSATII Satellite Satellite 1 631 -137 935 113 6 12 chr11 5307390 5307884 -143475588 + HSATII Satellite Satellite 1 491 -99 977 99 9 16 chr11 5307913 5308487 -143474985 + HSATII Satellite Satellite 1 570 -16 998 104 8 18 chr11 5308525 5309023 -143474449 + HSATII Satellite Satellite 1 493 -23 974 132 12 13 chr11 5309038 5309489 -143473983 + HSATII Satellite Satellite 1 450 -1 959 110 13 12 chr11 5309519 5311271 -143472201 + HSATII Satellite Satellite 1 1754 -17 818 111 21 0 chr11 5311287 5311431 -143472041 + HSATII Satellite Satellite 1 147 -23 965 113 9 13 chr11 5311446 5311899 -143471573 + HSATII Satellite Satellite 1 451 -23 953 125 16 17 chr11 5311921 5313127 -143470345 + HSATII Satellite Satellite 1 1204 -1 998 110 17 12 chr11 5313157 5314890 -143468582 + HSATII Satellite Satellite 1 1741 -4 779 136 4 18 chr11 5314917 5315197 -143468275 + HSATII Satellite Satellite 1 276 -86 941 125 7 18 chr11 5315356 5316181 -143467291 + HSATII Satellite Satellite 1 816 0 998 117 9 14 chr11 5316204 5317933 -143465539 + HSATII Satellite Satellite 1 1720 -1 998 122 12 16 chr11 5317952 5318871 -143464601 + HSATII Satellite Satellite 1 915 -2 1031 115 19 12 chr11 5318902 5320618 -143462854 + HSATII Satellite Satellite 1 1727 -1 980 105 12 12 chr11 5320648 5321927 -143461545 + HSATII Satellite Satellite 1 1279 -23 953 122 21 18 chr11 5321949 5323155 -143460317 + HSATII Satellite Satellite 1 1209 -1 980 113 13 12 chr11 5323185 5324878 -143458594 + HSATII Satellite Satellite 1 1694 -51 932 109 7 15 chr11 5324912 5325505 -143457967 + HSATII Satellite Satellite 1 588 -11 694 149 18 18 chr11 5325538 5325761 -143457711 + HSATII Satellite Satellite 1 223 -94 986 113 10 16 chr11 5325889 5327427 -143456045 + HSATII Satellite Satellite 1 1529 -9 781 129 18 18 chr11 5327458 5327628 -143455844 + HSATII Satellite Satellite 1 170 0 928 96 13 19 chr11 5327653 5327967 -143455505 + HSATII Satellite Satellite 1 312 -31 998 111 5 0 chr11 5327980 5328192 -143455280 + HSATII Satellite Satellite 1 213 -1 932 127 11 19 chr11 5328215 5328816 -143454656 + HSATII Satellite Satellite 1 596 -1 980 103 12 12 chr11 5328846 5330122 -143453350 + HSATII Satellite Satellite 1 1276 -26 965 137 14 19 chr11 5330147 5330592 -143452880 + HSATII Satellite Satellite 1 442 -1 982 114 12 12 chr11 5330622 5331906 -143451566 + HSATII Satellite Satellite 1 1285 -17 965 108 23 14 chr11 5331922 5332410 -143451062 + HSATII Satellite Satellite 1 492 0 944 121 9 15 chr11 5332433 5334016 -143449456 + HSATII Satellite Satellite 1 1573 -1 989 109 13 8 chr11 5334046 5335161 -143448311 + HSATII Satellite Satellite 1 1120 -8 965 103 7 19 chr11 5335172 5335793 -143447679 + HSATII Satellite Satellite 1 613 -23 932 143 14 19 chr11 5335815 5336260 -143447212 + HSATII Satellite Satellite 1 442 -1 1031 106 10 12 chr11 5336290 5339342 -143444130 + HSATII Satellite Satellite 1 3047 -23 980 117 10 16 chr11 5339355 5342425 -143441047 + HSATII Satellite Satellite 1 3051 -1 977 107 12 11 chr11 5342455 5344684 -143438788 + HSATII Satellite Satellite 1 2229 -27 980 112 14 13 chr11 5344700 5347466 -143436006 + HSATII Satellite Satellite 1 2766 0 965 119 9 17 chr11 5347497 5348333 -143435139 + HSATII Satellite Satellite 1 829 -1 998 114 13 14 chr11 5348363 5350724 -143432748 + HSATII Satellite Satellite 1 2358 0 980 98 6 14 chr11 5350844 5351491 -143431981 + HSATII Satellite Satellite 1 642 -26 977 121 11 16 chr11 5351516 5353737 -143429735 + HSATII Satellite Satellite 1 2210 -1 965 104 12 12 chr11 5353767 5355046 -143428426 + HSATII Satellite Satellite 1 1279 -23 932 117 18 20 chr11 5355068 5355803 -143427669 + HSATII Satellite Satellite 1 733 -1 887 140 9 20 chr11 5355829 5356274 -143427198 + HSATII Satellite Satellite 1 440 -1 980 107 12 12 chr11 5356304 5357580 -143425892 + HSATII Satellite Satellite 1 1276 -26 974 118 18 20 chr11 5357605 5358197 -143425275 + HSATII Satellite Satellite 1 590 0 1012 104 9 13 chr11 5358220 5359359 -143424113 + HSATII Satellite Satellite 1 1134 -23 1019 115 12 12 chr11 5359381 5361445 -143422027 + HSATII Satellite Satellite 1 2063 -1 1031 114 9 15 chr11 5361468 5367133 -143416339 + HSATII Satellite Satellite 1 5633 -23 998 115 11 16 chr11 5367148 5372006 -143411466 + HSATII Satellite Satellite 1 4833 -9 670 147 18 18 chr11 5372037 5372207 -143411265 + HSATII Satellite Satellite 1 170 0 907 123 12 13 chr11 5372232 5373394 -143410078 + HSATII Satellite Satellite 1 1161 -1 998 113 12 12 chr11 5373424 5377796 -143405676 + HSATII Satellite Satellite 1 4370 -8 1031 98 2 15 chr11 5377807 5378425 -143405047 + HSATII Satellite Satellite 1 610 -23 956 119 10 17 chr11 5378449 5379458 -143404014 + HSATII Satellite Satellite 1 1001 -19 980 111 11 11 chr11 5379477 5382317 -143401155 + HSATII Satellite Satellite 1 2840 -23 980 114 14 13 chr11 5382339 5384093 -143399379 + HSATII Satellite Satellite 1 1755 -23 1031 113 10 12 chr11 5384115 5389897 -143393575 + HSATII Satellite Satellite 1 5770 -15 998 118 13 14 chr11 5389911 5392851 -143390621 + HSATII Satellite Satellite 1 2936 -92 1805 93 12 157 chr11 5492872 5492918 -143290554 + MER4E LTR ERV1 421 472 -307 2126 108 7 3 chr11 5492918 5493213 -143290259 - AluSq SINE Alu -6 307 12 1805 93 12 157 chr11 5493213 5493586 -143289886 + MER4E LTR ERV1 472 779 0 3152 165 23 92 chr11 5493595 5493750 -143289722 + LTR8 LTR ERV1 2 166 -525 2235 78 32 7 chr11 5493750 5494031 -143289441 - AluSq SINE Alu -19 294 7 3152 165 23 92 chr11 5494031 5494616 -143288856 + LTR8 LTR ERV1 166 691 0 804 295 28 0 chr11 5494681 5494898 -143288574 + LTR16A LTR ERVL 215 437 -13 2645 59 0 0 chr11 5495032 5495338 -143288134 + AluY SINE Alu 1 306 -5 277 207 34 45 chr11 5495723 5495902 -143287570 + (GTGTG)n Simple_repeat Simple_repeat 4 180 0 330 139 0 0 chr11 5495902 5495974 -143287498 + (G)n Simple_repeat Simple_repeat 1 72 0 200 211 19 0 chr11 5495986 5496038 -143287434 + G-rich Low_complexity Low_complexity 4 56 0 204 40 0 0 chr11 5496052 5496077 -143287395 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 2245 110 47 69 chr11 5496355 5496634 -143286838 + LTR23 LTR ERV1 1 285 -152 4664 103 24 88 chr11 5496634 5496986 -143286486 - MER4E LTR ERV1 0 779 406 2205 118 0 3 chr11 5496986 5497282 -143286190 + AluSc SINE Alu 1 295 -14 4664 103 24 88 chr11 5497282 5497510 -143285962 - MER4E LTR ERV1 -373 406 165 2320 91 6 16 chr11 5497510 5497828 -143285644 + AluYb8 SINE Alu 1 315 -3 4664 103 24 88 chr11 5497828 5497869 -143285603 - MER4E LTR ERV1 -614 165 123 270 0 0 0 chr11 5497869 5497899 -143285573 + (TA)n Simple_repeat Simple_repeat 2 31 0 4664 103 24 88 chr11 5497899 5498107 -143285365 - MER4E LTR ERV1 -656 123 1 2245 110 47 69 chr11 5498107 5498274 -143285198 + LTR23 LTR ERV1 285 437 0 977 79 0 7 chr11 5498432 5498571 -143284901 + MER4C LTR ERV1 1 138 -327 1397 92 0 5 chr11 5498573 5498757 -143284715 + AluSp SINE Alu 130 312 -1 1917 85 115 3 chr11 5498757 5499062 -143284410 + MER4C LTR ERV1 127 465 0 557 223 121 25 chr11 5499064 5499221 -143284251 + MIR SINE MIR 53 224 -38 946 191 126 65 chr11 5499223 5499605 -143283867 - LTR56 LTR ERV1 -21 424 20 180 0 0 0 chr11 5499607 5499627 -143283845 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 292 98 98 0 chr11 5499819 5499870 -143283602 + MIR SINE MIR 102 157 -105 744 176 53 18 chr11 5499872 5500042 -143283430 - LTR49 LTR ERV1 0 595 420 451 174 214 8 chr11 5500040 5500339 -143283133 - LTR29 LTR ERV1 -198 424 1 * 344 269 28 9 chr11 5500339 5500447 -143283025 + MIR SINE MIR 153 262 0 888 170 0 0 chr11 5502920 5503061 -143280411 - FLAM_C SINE Alu -2 141 1 2334 99 13 3 chr11 5503066 5503369 -143280103 - AluSc SINE Alu -3 306 1 695 227 133 10 chr11 5507219 5507422 -143276050 - MIR SINE MIR -20 242 15 289 347 137 16 chr11 5508131 5508379 -143275093 + L2 LINE L2 2951 3228 -44 684 294 38 13 chr11 5508759 5508994 -143274478 + L2 LINE L2 3073 3313 0 456 226 175 32 chr11 5509293 5509602 -143273870 - L1ME4a LINE L1 -2 6119 5767 2230 103 3 20 chr11 5509733 5510034 -143273438 - AluSq SINE Alu -9 304 9 4416 92 17 73 chr11 5510617 5511379 -143272093 - L1PB1 LINE L1 0 6151 5433 21 0 0 0 chr11 5511641 5511662 -143271810 + AT_rich Low_complexity Low_complexity 1 21 0 2052 148 17 0 chr11 5512718 5513015 -143270457 + AluSx SINE Alu 1 302 -10 1050 196 117 58 chr11 5513289 5513511 -143269961 - MLT1A1 LTR MaLR -3 362 112 2612 124 31 49 chr11 5513511 5513690 -143269782 + MER65A LTR ERV1 1 182 -263 2418 86 7 0 chr11 5513690 5513991 -143269481 + AluSp SINE Alu 1 303 -10 2612 124 31 49 chr11 5513991 5514264 -143269208 + MER65A LTR ERV1 182 445 0 1050 196 117 58 chr11 5514264 5514383 -143269089 - MLT1A1 LTR MaLR -253 112 1 1758 185 7 17 chr11 5515934 5516236 -143267236 - AluJo SINE Alu -13 299 1 357 221 40 185 chr11 5517082 5517307 -143266165 + L2 LINE L2 3058 3231 -82 1807 171 30 10 chr11 5517307 5517612 -143265860 - AluSx SINE Alu 0 312 2 357 221 40 185 chr11 5517612 5517684 -143265788 + L2 LINE L2 3231 3312 -1 344 277 84 0 chr11 5517707 5517826 -143265646 - MIR SINE MIR -15 247 119 193 333 42 0 chr11 5518036 5518108 -143265364 + L2 LINE L2 3192 3266 -6 1930 186 0 0 chr11 5518172 5518483 -143264989 - AluJb SINE Alu -1 311 1 275 300 70 20 chr11 5518537 5518637 -143264835 - L2 LINE L2 -26 3287 3183 516 309 24 63 chr11 5518704 5518956 -143264516 - L2 LINE L2 -357 2957 2716 306 154 39 0 chr11 5519198 5519250 -143264222 + L2 LINE L2 3255 3308 -5 195 69 0 0 chr11 5519535 5519564 -143263908 + (CAA)n Simple_repeat Simple_repeat 3 31 0 2179 119 0 3 chr11 5522311 5522621 -143260851 + AluSx SINE Alu 1 309 -3 2359 95 0 0 chr11 5523716 5524011 -143259461 - AluSg SINE Alu -14 296 2 2092 177 36 120 chr11 5524041 5524709 -143258763 - LTR9 LTR ERV1 0 612 1 1372 210 105 18 chr11 5525025 5525358 -143258114 - MER93b LTR ERV1 0 373 12 2250 114 3 0 chr11 5525407 5525704 -143257768 + AluSp SINE Alu 1 298 -15 1644 177 100 84 chr11 5525786 5526168 -143257304 + MLT1C LTR MaLR 8 400 -67 2054 130 0 17 chr11 5526168 5526460 -143257012 - AluSq SINE Alu -25 288 2 1644 177 100 84 chr11 5526460 5526528 -143256944 + MLT1C LTR MaLR 400 465 -2 253 333 9 9 chr11 5527549 5527657 -143255815 + ERVL LTR ERVL 3252 3359 -2405 1155 219 109 27 chr11 5528255 5528621 -143254851 - MSTD LTR MaLR 0 396 1 1351 251 92 14 chr11 5528621 5529043 -143254429 + MLT1C LTR MaLR 13 467 0 197 143 48 0 chr11 5530727 5530769 -143252703 + GA-rich Low_complexity Low_complexity 3 46 0 210 143 0 0 chr11 5530797 5530832 -143252640 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 1327 157 126 28 chr11 5531296 5531574 -143251898 - Charlie5 DNA MER1_type 0 2624 2302 2851 133 9 0 chr11 5531574 5532004 -143251468 - MER57B LTR ERV1 0 434 1 1327 157 126 28 chr11 5532004 5532081 -143251391 - Charlie5 DNA MER1_type -322 2302 2234 2241 125 3 0 chr11 5532296 5532607 -143250865 + AluSx SINE Alu 1 312 0 3008 222 15 15 chr11 5532906 5533558 -143249914 - MER82 DNA MER2_type 0 653 2 421 141 28 0 chr11 5533738 5533809 -143249663 + AluJ/FRAM SINE Alu 224 296 -16 180 125 0 0 chr11 5533847 5533879 -143249593 + (A)n Simple_repeat Simple_repeat 1 32 0 684 242 43 0 chr11 5533954 5534140 -143249332 - MIR SINE MIR -34 228 35 641 198 87 12 chr11 5534629 5534801 -143248671 + MER53 DNA DNA 5 189 0 25 0 0 0 chr11 5535277 5535302 -143248170 + AT_rich Low_complexity Low_complexity 1 25 0 202 234 0 96 chr11 5535407 5535501 -143247971 + MIR SINE MIR 48 132 -130 267 79 0 0 chr11 5535864 5535902 -143247570 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2004 144 3 0 chr11 5535905 5536190 -143247282 - AluJb SINE Alu -26 286 1 918 151 6 38 chr11 5536466 5536625 -143246847 - MER3 DNA MER1_type 0 209 56 2640 86 13 5 chr11 5536946 5537320 -143246152 - L1PA13 LINE L1 -2 6161 5785 657 25 0 0 chr11 5537747 5537826 -143245646 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1345 191 67 21 chr11 5537925 5538207 -143245265 - AluJb SINE Alu -12 300 6 2337 98 3 0 chr11 5538249 5538546 -143244926 - AluSx SINE Alu -14 298 1 316 331 25 32 chr11 5538552 5538709 -143244763 - ERVL LTR ERVL -469 5295 5140 1849 173 31 45 chr11 5540066 5540692 -143242780 - LTR8 LTR ERV1 0 691 1 227 161 18 0 chr11 5540913 5540969 -143242503 + (TA)n Simple_repeat Simple_repeat 2 58 0 876 127 0 0 chr11 5540969 5541087 -143242385 - FLAM_C SINE Alu -19 124 7 2105 133 76 129 chr11 5541277 5541403 -143242069 + MER39B LTR ERV1 1 132 -521 2344 92 3 13 chr11 5541403 5541717 -143241755 + AluSx SINE Alu 1 311 -1 2105 133 76 129 chr11 5541717 5541741 -143241731 + MER39B LTR ERV1 132 156 -497 2201 116 10 0 chr11 5541741 5542044 -143241428 + AluSx SINE Alu 1 306 -6 2105 133 76 129 chr11 5542044 5542176 -143241296 + MER39B LTR ERV1 156 293 -360 1922 164 0 16 chr11 5542176 5542493 -143240979 + AluJo SINE Alu 1 312 0 2105 133 76 129 chr11 5542493 5542735 -143240737 + MER39B LTR ERV1 293 499 -154 899 177 20 0 chr11 5542736 5542910 -143240562 + FRAM SINE Alu 1 173 0 967 158 6 6 chr11 5542911 5543082 -143240390 + MER39 LTR ERV1 537 707 0 2434 95 0 0 chr11 5543572 5543876 -143239596 - AluSq SINE Alu -9 304 1 2282 98 10 0 chr11 5544161 5544457 -143239015 + AluSx SINE Alu 1 299 -13 387 172 46 0 chr11 5544625 5544712 -143238760 + L1MC5 LINE L1 7805 7895 -66 2472 63 3 0 chr11 5544932 5545231 -143238241 + AluY SINE Alu 1 300 -11 312 185 370 0 chr11 5545531 5545612 -143237860 + MER81 DNA DNA 1 111 -3 225 196 0 0 chr11 5546206 5546257 -143237215 + CT-rich Low_complexity Low_complexity 1 51 0 1738 174 119 31 chr11 5546871 5547290 -143236182 + LTR2B LTR ERV1 32 487 -3 2184 109 20 0 chr11 5547626 5547920 -143235552 + AluSx SINE Alu 3 302 -10 2397 135 49 91 chr11 5548646 5548858 -143234614 + L1MA8 LINE L1 5762 5981 -310 2722 36 0 0 chr11 5548858 5549166 -143234306 + AluY SINE Alu 1 308 -3 2397 135 49 91 chr11 5549166 5549502 -143233970 + L1MA8 LINE L1 5981 6287 -4 205 26 26 51 chr11 5549653 5549692 -143233780 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1642 223 72 31 chr11 5549989 5550433 -143233039 - MLT1C LTR MaLR 0 467 6 1059 83 0 0 chr11 5550551 5550683 -143232789 + AluY SINE Alu 1 132 -179 1746 85 0 13 chr11 5550683 5550918 -143232554 + AluY SINE Alu 66 297 -14 1106 228 154 23 chr11 5550936 5551365 -143232107 + MLT1H LTR MaLR 35 555 0 819 354 13 10 chr11 5551387 5551783 -143231689 - HERVL LTR ERVL -1195 4459 4063 671 215 45 40 chr11 5552005 5552182 -143231290 + AluJo SINE Alu 119 296 -16 322 260 39 0 chr11 5552381 5552458 -143231014 - HERVL LTR ERVL -2031 3733 3654 239 167 0 69 chr11 5552497 5552569 -143230903 - L1M4 LINE L1 -303 5818 5759 321 311 0 66 chr11 5552758 5552909 -143230563 - L2 LINE L2 -199 3073 2933 427 245 29 36 chr11 5553287 5553426 -143230046 + MIR SINE MIR 76 213 -49 216 328 95 39 chr11 5553593 5553825 -143229647 + L2 LINE L2 2627 2871 -443 26 30 0 0 chr11 5554106 5554139 -143229333 + AT_rich Low_complexity Low_complexity 1 33 0 322 38 19 19 chr11 5556278 5556331 -143227141 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 253 320 13 0 chr11 5556336 5556411 -143227061 - L2 LINE L2 -13 3300 3225 2031 96 0 4 chr11 5556414 5556674 -143226798 + AluSg1 SINE Alu 32 290 -19 324 77 46 0 chr11 5556674 5556739 -143226733 + (TA)n Simple_repeat Simple_repeat 1 68 0 2188 114 0 25 chr11 5556832 5557147 -143226325 + AluSx SINE Alu 1 307 -5 219 325 100 0 chr11 5557591 5557671 -143225801 - L2 LINE L2 0 3313 3226 2274 102 0 3 chr11 5559627 5559920 -143223552 + AluSq SINE Alu 1 292 -21 1496 161 50 47 chr11 5559939 5560237 -143223235 - AluJo SINE Alu -13 299 1 372 333 33 0 chr11 5560423 5560543 -143222929 - L2 LINE L2 -2 3270 3147 186 290 76 23 chr11 5560838 5560969 -143222503 - MIR SINE MIR -20 242 105 1494 123 0 60 chr11 5561237 5561396 -143222076 + MER50 LTR ERV1 499 639 -95 2359 116 0 0 chr11 5561396 5561707 -143221765 - AluSp SINE Alu -2 311 1 1494 123 0 60 chr11 5561707 5561798 -143221674 + MER50 LTR ERV1 639 734 0 612 191 0 9 chr11 5561800 5561910 -143221562 + MER50-int LTR ERV1 4 112 -7093 267 31 0 0 chr11 5561910 5561942 -143221530 + (A)n Simple_repeat Simple_repeat 1 32 0 672 206 39 7 chr11 5562259 5562414 -143221058 + MER5C DNA MER1_type 1 160 -164 1604 153 11 0 chr11 5562416 5562678 -143220794 + L1MD3 LINE L1 7726 7990 -5 499 167 80 60 chr11 5562686 5562713 -143220759 + MER5C DNA MER1_type 172 197 -127 2389 103 0 0 chr11 5562713 5563024 -143220448 - AluSq SINE Alu -2 311 1 499 167 80 60 chr11 5563024 5563146 -143220326 + MER5C DNA MER1_type 197 324 0 219 262 186 38 chr11 5565265 5565475 -143217997 - L2 LINE L2 -220 3052 2812 189 355 0 0 chr11 5565626 5565702 -143217770 - L2 LINE L2 -611 2703 2628 1241 217 137 35 chr11 5565737 5566161 -143217311 + MLT1C LTR MaLR 1 467 0 249 310 28 0 chr11 5566169 5566240 -143217232 - L2 LINE L2 -42 3271 3199 468 259 91 14 chr11 5566259 5566402 -143217070 - L2 LINE L2 0 3313 3160 332 194 32 0 chr11 5566402 5566526 -143216946 + (AATAG)n Simple_repeat Simple_repeat 1 128 0 255 256 171 82 chr11 5566588 5566857 -143216615 + LTR33A LTR ERVL 13 305 -218 2761 70 99 5 chr11 5566880 5567283 -143216189 + LTR7 LTR ERV1 1 441 -9 14939 110 10 22 chr11 5567293 5570075 -143213397 + HERVH LTR ERV1 1 2995 -4718 5692 105 19 5 chr11 5570054 5570903 -143212569 + HERVH LTR ERV1 3140 4000 -3713 * 3001 132 5 2 chr11 5570898 5571509 -143211963 + HERVH LTR ERV1 4489 5149 -2564 * 1514 127 0 0 chr11 5571510 5571730 -143211742 + HERVH LTR ERV1 5600 5819 -1894 2446 81 65 14 chr11 5571730 5572101 -143211371 + HERVH LTR ERV1 7324 7713 0 2639 86 106 5 chr11 5572101 5572508 -143210964 + LTR7 LTR ERV1 1 448 -2 686 225 41 6 chr11 5572510 5572679 -143210793 + LTR33A LTR ERVL 339 513 -10 359 256 105 47 chr11 5572686 5572877 -143210595 - L2 LINE L2 -224 3089 2888 952 222 135 94 chr11 5572964 5573215 -143210257 + L2 LINE L2 2780 3019 -294 1377 264 3 115 chr11 5573215 5573545 -143209927 - AluSg SINE Alu -7 293 1 952 222 135 94 chr11 5573545 5573807 -143209665 + L2 LINE L2 3019 3313 0 556 296 36 105 chr11 5573806 5574085 -143209387 - L2 LINE L2 -575 2739 2501 * 829 168 0 0 chr11 5574085 5574216 -143209256 + FLAM_A SINE Alu 1 131 -2 556 296 36 105 chr11 5574216 5574382 -143209090 - L2 LINE L2 -813 2501 2325 1867 152 0 34 chr11 5574582 5574905 -143208567 + AluJb SINE Alu 1 312 0 2302 90 3 3 chr11 5574916 5575215 -143208257 + AluSp SINE Alu 1 299 -14 1992 172 0 6 chr11 5575448 5575762 -143207710 + AluSx SINE Alu 1 312 0 417 299 81 11 chr11 5575770 5575944 -143207528 + L1M4 LINE L1 5040 5225 -921 2923 106 5 23 chr11 5575973 5576157 -143207315 - MER57B LTR ERV1 0 434 248 2447 67 0 7 chr11 5576157 5576454 -143207018 + AluY SINE Alu 8 302 -9 2923 106 5 23 chr11 5576454 5576711 -143206761 - MER57B LTR ERV1 -186 248 1 437 292 156 29 chr11 5576716 5577024 -143206448 - L2 LINE L2 -1268 2046 1700 1362 274 114 9 chr11 5577117 5577574 -143205898 + MLT1J LTR MaLR 1 505 -6 2403 102 3 0 chr11 5577581 5577885 -143205587 + AluSx SINE Alu 1 305 -7 449 202 11 21 chr11 5577991 5578085 -143205387 + MIR SINE MIR 63 155 -107 * 636 368 40 35 chr11 5578079 5578381 -143205091 - L2 LINE L2 -1808 1506 1198 2635 61 0 0 chr11 5578381 5578692 -143204780 - AluY SINE Alu 0 311 1 636 368 40 35 chr11 5578692 5578984 -143204488 - L2 LINE L2 -2116 1198 909 435 271 97 13 chr11 5580038 5580193 -143203279 - MIR SINE MIR -63 199 32 2429 91 13 0 chr11 5580436 5580745 -143202727 - AluSp SINE Alu 0 313 1 1116 369 54 15 chr11 5581184 5581972 -143201500 + ERVL LTR ERVL 4484 5346 -418 909 189 26 5 chr11 5582183 5582374 -143201098 + MER4B LTR ERV1 1 195 -415 2428 81 3 0 chr11 5582374 5582671 -143200801 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr11 5582673 5582694 -143200778 + AT_rich Low_complexity Low_complexity 1 21 0 729 154 147 13 chr11 5582696 5582852 -143200620 + MER4D LTR ERV1 357 533 -370 183 339 17 0 chr11 5583319 5583378 -143200094 + MIR SINE MIR 41 100 -162 1294 324 78 26 chr11 5583385 5584228 -143199244 + L2 LINE L2 1931 2817 -497 334 338 152 21 chr11 5584264 5584646 -143198826 + L2 LINE L2 2881 3312 -1 2241 109 3 3 chr11 5584700 5585002 -143198470 + AluSx SINE Alu 1 302 -10 229 204 0 0 chr11 5588503 5588547 -143194925 + GA-rich Low_complexity Low_complexity 1 44 0 417 340 66 33 chr11 5590788 5591123 -143192349 + L2 LINE L2 2550 2895 -419 220 322 91 16 chr11 5591314 5591435 -143192037 + L2 LINE L2 3162 3291 -22 184 135 19 19 chr11 5591447 5591499 -143191973 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 445 290 76 58 chr11 5591910 5592134 -143191338 + Charlie8 DNA MER1_type 12 239 -2178 701 177 38 144 chr11 5592142 5592214 -143191258 + L1MC5 LINE L1 7203 7281 -680 2569 26 16 7 chr11 5592214 5592518 -143190954 - AluYb8 SINE Alu -11 307 1 701 177 38 144 chr11 5592518 5592812 -143190660 + L1MC5 LINE L1 7281 7530 -431 702 193 0 0 chr11 5592813 5592932 -143190540 + AluJo/FLAM SINE Alu 2 120 -192 2398 109 3 0 chr11 5592932 5593243 -143190229 - AluSq SINE Alu -1 312 1 860 181 0 0 chr11 5593243 5593376 -143190096 - AluJb SINE Alu -177 135 3 607 197 67 84 chr11 5593401 5593513 -143189959 + L1MC5 LINE L1 7629 7741 -220 1518 219 0 17 chr11 5593513 5593814 -143189658 - AluJb SINE Alu -16 296 1 607 197 67 84 chr11 5593814 5593985 -143189487 + L1MC5 LINE L1 7741 7907 -54 307 68 0 0 chr11 5594491 5594535 -143188937 + AluSc SINE Alu 250 293 -6 576 299 73 17 chr11 5594589 5594823 -143188649 + MIR SINE MIR 2 248 -14 264 189 0 0 chr11 5595272 5595346 -143188126 + CT-rich Low_complexity Low_complexity 2 75 0 2356 101 6 16 chr11 5596574 5596890 -143186582 - AluSq SINE Alu 0 313 1 884 267 50 23 chr11 5596894 5597194 -143186278 + L2 LINE L2 3006 3313 0 1720 56 112 72 chr11 5597959 5598210 -143185262 - AluSq SINE Alu -52 261 1 331 366 50 24 chr11 5598412 5598775 -143184697 + L2 LINE L2 2684 3059 -213 401 329 36 0 chr11 5599774 5599914 -143183558 - L2 LINE L2 -24 3248 3104 241 158 105 66 chr11 5599893 5599969 -143183503 + L2 LINE L2 3231 3309 -4 * 1195 317 113 29 chr11 5600188 5601157 -143182315 + L2 LINE L2 1527 2577 -737 2157 96 4 7 chr11 5601185 5601465 -143182007 - AluSx SINE Alu -16 296 18 668 290 90 30 chr11 5601482 5601987 -143181485 + L2 LINE L2 2772 3313 0 1583 281 152 29 chr11 5601999 5602868 -143180604 - L2 LINE L2 -609 2705 1730 29 47 0 0 chr11 5603518 5603561 -143179911 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 5603856 5603877 -143179595 + GC_rich Low_complexity Low_complexity 1 21 0 529 289 65 9 chr11 5603967 5604178 -143179294 - MIR SINE MIR 0 262 39 1473 157 73 4 chr11 5604487 5604761 -143178711 - AluJo SINE Alu -19 293 1 403 208 33 25 chr11 5604973 5605093 -143178379 - L1MC5 LINE L1 -21 7940 7820 233 250 0 18 chr11 5605196 5605252 -143178220 - L2 LINE L2 -232 3040 2986 189 0 0 0 chr11 5605268 5605289 -143178183 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 774 339 65 20 chr11 5605289 5605618 -143177854 - L2 LINE L2 -5 3267 2954 2152 161 44 53 chr11 5605618 5605799 -143177673 + MSTA LTR MaLR 1 182 -246 2092 112 3 11 chr11 5605799 5606109 -143177363 + AluSq SINE Alu 1 308 0 2152 161 44 53 chr11 5606109 5606284 -143177188 + MSTA LTR MaLR 182 356 -72 2517 87 0 0 chr11 5606284 5606594 -143176878 - AluY SINE Alu -1 310 1 2152 161 44 53 chr11 5606594 5606665 -143176807 + MSTA LTR MaLR 356 426 -2 774 339 65 20 chr11 5606665 5607097 -143176375 - L2 LINE L2 -318 2954 2425 662 203 0 7 chr11 5607949 5608087 -143175385 - FLAM_C SINE Alu -4 139 3 653 319 62 53 chr11 5608119 5608568 -143174904 - L2 LINE L2 -1142 2172 1720 3858 132 18 26 chr11 5608611 5609330 -143174142 + L1MA7 LINE L1 5576 6288 -3 2253 93 0 27 chr11 5609686 5609986 -143173486 - AluSg SINE Alu -18 292 1 1187 284 105 59 chr11 5610079 5610588 -143172884 + MLT1K LTR MaLR 3 540 -48 2020 134 3 3 chr11 5610588 5610880 -143172592 - AluSx SINE Alu -15 297 6 1187 284 105 59 chr11 5610880 5610915 -143172557 + MLT1K LTR MaLR 540 572 -16 276 216 86 60 chr11 5610950 5611066 -143172406 + LTR50 LTR ERVL 17 135 -660 428 258 102 21 chr11 5611244 5611430 -143172042 + LTR33A LTR ERVL 323 523 0 24 0 0 0 chr11 5611679 5611703 -143171769 + AT_rich Low_complexity Low_complexity 1 24 0 1738 171 11 7 chr11 5611703 5611984 -143171488 - AluJo SINE Alu -30 282 1 659 335 47 35 chr11 5612646 5613076 -143170396 + L2 LINE L2 2466 2900 -414 1708 209 8 11 chr11 5613458 5613821 -143169651 + MLT1A1 LTR MaLR 4 365 0 2448 286 114 32 chr11 5617267 5617989 -143165483 + L2 LINE L2 1738 2399 -914 2195 104 10 3 chr11 5617989 5618278 -143165194 - AluSq SINE Alu -22 291 1 2448 286 114 32 chr11 5618278 5618997 -143164475 + L2 LINE L2 2399 3309 -4 2019 161 0 3 chr11 5619121 5619432 -143164040 - AluJb SINE Alu -2 310 1 1213 59 0 0 chr11 5619748 5619884 -143163588 + AluSx SINE Alu 1 136 -177 1298 110 0 0 chr11 5619914 5620100 -143163372 + AluSx SINE Alu 121 306 0 1697 153 67 27 chr11 5620254 5620554 -143162918 - AluJb SINE Alu 0 312 1 193 403 131 14 chr11 5622454 5622873 -143160599 - L2 LINE L2 -1 3271 2804 230 191 0 32 chr11 5623058 5623121 -143160351 + (CCA)n Simple_repeat Simple_repeat 3 63 0 279 114 0 0 chr11 5623625 5623669 -143159803 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 666 345 74 30 chr11 5623671 5624103 -143159369 - L2 LINE L2 -15 3257 2807 289 331 222 3 chr11 5624148 5624459 -143159013 - L2 LINE L2 -897 2417 2039 580 252 60 13 chr11 5624483 5624634 -143158838 - MER91A DNA MER1_type -16 180 23 180 315 18 36 chr11 5624663 5624774 -143158698 - L2 LINE L2 -1287 2027 1919 216 0 0 0 chr11 5625364 5625388 -143158084 + (A)n Simple_repeat Simple_repeat 1 24 0 426 284 226 8 chr11 5626737 5626980 -143156492 + L2 LINE L2 3017 3312 -1 1251 182 13 98 chr11 5629211 5629607 -143153865 + MLT1A1 LTR MaLR 1 362 -3 397 295 85 0 chr11 5629607 5629736 -143153736 - MIR SINE MIR -104 158 19 2096 169 61 2 chr11 5629758 5630167 -143153305 + MER63B DNA MER1_type 2 434 -2 334 322 11 0 chr11 5630192 5630279 -143153193 + L2 LINE L2 3210 3297 -16 2383 95 3 3 chr11 5630488 5630793 -143152679 - AluY SINE Alu -6 305 1 760 309 96 13 chr11 5630955 5631482 -143151990 + L2 LINE L2 2737 3313 0 2508 94 0 0 chr11 5632193 5632500 -143150972 - AluSq SINE Alu -6 307 1 194 338 42 0 chr11 5632724 5632795 -143150677 - L2 LINE L2 -7 3265 3192 537 328 179 33 chr11 5634464 5635370 -143148102 + L2 LINE L2 2233 3272 0 181 107 0 0 chr11 5636462 5636490 -143146982 - L2 LINE L2 0 3272 3245 649 272 96 43 chr11 5636568 5637114 -143146358 - L2 LINE L2 -213 3059 2428 202 368 35 18 chr11 5637736 5637850 -143145622 + L2 LINE L2 2931 3046 -226 431 298 111 17 chr11 5637920 5638101 -143145371 + L2 LINE L2 3111 3308 -5 279 211 293 0 chr11 5638126 5638259 -143145213 + L2 LINE L2 2297 2468 -846 254 178 0 0 chr11 5638374 5638419 -143145053 - L2 LINE L2 -94 3178 3134 203 100 0 25 chr11 5638419 5638459 -143145013 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1999 134 13 39 chr11 5639015 5639321 -143144151 + AluJb SINE Alu 1 298 -14 563 247 147 0 chr11 5640124 5640294 -143143178 - MIR SINE MIR -62 200 6 559 234 60 6 chr11 5691414 5691581 -143091891 + MER104 DNA MER2_type 3 178 -2 473 198 279 10 chr11 5692291 5692488 -143090984 - L1ME4a LINE L1 -15 6106 5857 12397 106 35 51 chr11 5695535 5697524 -143085948 - Tigger1 DNA MER2_type -462 1956 1 544 292 146 13 chr11 5698500 5698980 -143084492 + L2 LINE L2 2683 3220 -93 287 240 55 110 chr11 5698998 5699079 -143084393 + MIR SINE MIR 11 82 -180 1933 155 0 19 chr11 5699079 5699395 -143084077 - AluJb SINE Alu -2 310 1 287 240 55 110 chr11 5699395 5699459 -143084013 + MIR SINE MIR 82 148 -114 867 153 0 8 chr11 5699460 5699591 -143083881 + FLAM_A SINE Alu 2 131 -2 2401 97 0 0 chr11 5699608 5699918 -143083554 + AluSg SINE Alu 1 310 0 27 62 0 0 chr11 5699920 5699968 -143083504 + AT_rich Low_complexity Low_complexity 1 48 0 318 268 134 0 chr11 5699968 5700080 -143083392 + MIR SINE MIR 136 262 0 232 268 24 0 chr11 5700626 5700708 -143082764 - L2 LINE L2 -2914 400 317 661 270 68 89 chr11 5700809 5701275 -143082197 + L2 LINE L2 2736 3210 -103 613 114 19 19 chr11 5701275 5701380 -143082092 + L1MA4A LINE L1 6188 6292 -11 661 270 68 89 chr11 5701380 5701395 -143082077 + L2 LINE L2 3210 3224 -89 2232 103 3 3 chr11 5701395 5701696 -143081776 + AluSx SINE Alu 7 307 -5 661 270 68 89 chr11 5701696 5701804 -143081668 + L2 LINE L2 3224 3313 0 609 233 31 146 chr11 5702214 5702500 -143080972 - MER102a DNA MER1_type -1087 330 83 2298 101 0 7 chr11 5702500 5702796 -143080676 - AluSq SINE Alu -19 294 1 609 233 31 146 chr11 5702796 5702831 -143080641 - MER102a DNA MER1_type -1334 83 46 198 305 92 28 chr11 5703011 5703152 -143080320 + MIR SINE MIR 112 261 -1 2447 50 0 7 chr11 5704645 5704928 -143078544 - AluY SINE Alu -30 281 1 349 310 25 49 chr11 5705034 5705237 -143078235 + L2 LINE L2 3062 3259 -54 1167 268 29 20 chr11 5705617 5705960 -143077512 - L1ME3 LINE L1 0 6162 5817 491 252 37 7 chr11 5706332 5706467 -143077005 + MIR SINE MIR 15 153 -109 579 313 89 11 chr11 5706721 5707002 -143076470 + L2 LINE L2 2553 2855 -459 454 306 16 107 chr11 5707037 5707422 -143076050 + L2 LINE L2 2888 3237 -35 1000 295 212 33 chr11 5707454 5707916 -143075556 - L2 LINE L2 -8 3305 2927 1806 166 3 14 chr11 5707916 5708212 -143075260 + AluJo SINE Alu 1 293 -19 1000 295 212 33 chr11 5708212 5708434 -143075038 - L2 LINE L2 -386 2927 2746 853 165 0 0 chr11 5708434 5708567 -143074905 + FLAM_C SINE Alu 1 133 0 1000 295 212 33 chr11 5708567 5709199 -143074273 - L2 LINE L2 -567 2746 1747 378 0 0 0 chr11 5709287 5709329 -143074143 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 510 104 13 0 chr11 5709534 5709611 -143073861 + L1PA15 LINE L1 6082 6159 -6 1795 152 7 11 chr11 5710683 5710952 -143072520 + AluJo SINE Alu 1 268 -44 213 39 0 0 chr11 5711845 5711871 -143071601 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 306 198 74 12 chr11 5711871 5711952 -143071520 - MLT1L LTR MaLR -93 522 437 451 292 38 52 chr11 5712048 5712297 -143071175 - MLT1L LTR MaLR -199 416 109 241 222 0 37 chr11 5712399 5712453 -143071019 - MLT1K LTR MaLR -200 388 337 308 324 105 32 chr11 5712502 5713129 -143070343 - HAL1b LINE L1 -614 734 62 2195 113 7 0 chr11 5713335 5713627 -143069845 - AluSq SINE Alu -19 294 1 13746 160 13 4 chr11 5713627 5715822 -143067650 - L1M1 LINE L1 -5106 2459 245 1994 218 59 49 chr11 5715826 5715946 -143067526 + L1M4 LINE L1 2933 3050 -3096 2374 83 0 32 chr11 5715946 5716260 -143067212 + AluSx SINE Alu 1 304 -8 1994 218 59 49 chr11 5716260 5716711 -143066761 + L1M4 LINE L1 3050 3515 -2631 414 0 0 0 chr11 5716711 5716757 -143066715 + (CA)n Simple_repeat Simple_repeat 1 46 0 1994 218 59 49 chr11 5716757 5716877 -143066595 + L1M4 LINE L1 3515 3632 -2514 294 95 0 0 chr11 5716878 5716920 -143066552 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1416 199 0 31 chr11 5716944 5717230 -143066242 - AluJo SINE Alu 0 312 36 326 361 57 0 chr11 5717254 5717412 -143066060 - L1M4 LINE L1 -529 5655 5489 703 182 42 0 chr11 5717436 5717579 -143065893 + MIR SINE MIR 21 169 -93 987 118 0 0 chr11 5718177 5718312 -143065160 - AluSq/x SINE Alu -174 139 5 365 313 68 11 chr11 5718316 5718492 -143064980 + L2 LINE L2 3128 3313 0 943 176 140 0 chr11 5718671 5718864 -143064608 - MLT1A1 LTR MaLR 0 365 146 729 137 11 0 chr11 5718866 5719047 -143064425 - L1MA9 LINE L1 -17 6295 6017 * 2012 116 9 19 chr11 5719046 5719365 -143064107 + L1MA9 LINE L1 5604 5919 -393 835 176 0 13 chr11 5719381 5719534 -143063938 - MLT1A1 LTR MaLR -214 151 1 462 254 9 0 chr11 5719653 5719767 -143063705 - HAL1 LINE L1 -815 1692 1578 1833 137 29 11 chr11 5719785 5720062 -143063410 - AluJb SINE Alu -26 286 5 301 339 39 8 chr11 5720223 5720350 -143063122 - L2 LINE L2 0 3272 3142 273 315 83 0 chr11 5722834 5722942 -143060530 + MIR SINE MIR 120 236 -26 400 271 44 35 chr11 5723169 5723372 -143060100 + L1MC4 LINE L1 7820 8024 -18 1708 182 55 0 chr11 5723430 5723721 -143059751 - AluJo SINE Alu -5 307 1 988 60 0 0 chr11 5723767 5723900 -143059572 - L1P4 LINE L1 -729 5432 5300 585 168 36 15 chr11 5724011 5724148 -143059324 - L1MA3 LINE L1 -255 6050 5911 4654 201 127 13 chr11 5724149 5725569 -143057903 - MER52A LTR ERV1 0 1755 1 13546 159 17 18 chr11 5725569 5726189 -143057283 - L1MA3 LINE L1 -392 5913 5294 2035 129 13 29 chr11 5726189 5726500 -143056972 - AluSx SINE Alu -6 306 1 2111 125 0 42 chr11 5726504 5726815 -143056657 - AluSq SINE Alu -15 298 1 13546 159 17 18 chr11 5726815 5729739 -143053733 - L1MA3 LINE L1 -1014 5291 2316 588 284 48 52 chr11 5732447 5732697 -143050775 + MIR SINE MIR 6 254 -8 211 301 108 52 chr11 5732783 5732996 -143050476 - L2 LINE L2 -220 3052 2828 197 222 122 56 chr11 5733223 5733313 -143050159 - MIR SINE MIR -148 114 19 * 735 361 138 7 chr11 5733297 5734017 -143049455 - L2 LINE L2 -681 2633 1820 221 320 0 13 chr11 5734429 5734507 -143048965 + L2 LINE L2 290 366 -2948 346 135 0 0 chr11 5734511 5734563 -143048909 - MIR SINE MIR -28 234 183 2423 96 0 19 chr11 5734582 5734896 -143048576 - AluSx SINE Alu -2 310 3 462 298 186 34 chr11 5734922 5735368 -143048104 + L2 LINE L2 386 899 -2415 294 243 68 0 chr11 5735437 5735511 -143047961 + L2 LINE L2 2605 2683 -631 567 275 39 45 chr11 5735651 5735985 -143047487 + L1ME4a LINE L1 5518 5849 -272 5357 232 47 32 chr11 5736066 5736659 -143046813 - L1M4 LINE L1 -1278 4868 4285 2221 110 0 7 chr11 5736659 5736960 -143046512 - AluSc SINE Alu -10 299 1 5357 232 47 32 chr11 5736960 5738157 -143045315 - L1M4 LINE L1 -1861 4285 3051 483 171 0 0 chr11 5738161 5738237 -143045235 - FLAM SINE Alu -16 127 52 859 272 90 63 chr11 5738250 5738885 -143044587 - L1MEc LINE L1 -4337 2059 1408 612 262 42 6 chr11 5738905 5739073 -143044399 - MLT1J2 LTR MaLR -276 174 1 1970 122 37 17 chr11 5739489 5739785 -143043687 - AluSg SINE Alu -8 302 1 253 204 54 21 chr11 5740141 5740234 -143043238 + L1ME LINE L1 5756 5851 -313 226 213 126 63 chr11 5740305 5740432 -143043040 + LTR50 LTR ERVL 23 157 -638 541 293 40 5 chr11 5740711 5740933 -143042539 + LTR33A LTR ERVL 292 521 -2 210 87 65 0 chr11 5742162 5742208 -143041264 + (TA)n Simple_repeat Simple_repeat 2 50 0 927 206 25 0 chr11 5742209 5742369 -143041103 - FRAM SINE Alu -2 164 1 582 287 141 23 chr11 5742939 5743329 -143040143 - MLT1J2 LTR MaLR -14 436 1 915 278 72 31 chr11 5743380 5743729 -143039743 - L2 LINE L2 -337 2977 2615 385 205 0 24 chr11 5744460 5744543 -143038929 + L2 LINE L2 1354 1434 -1880 247 233 96 14 chr11 5745222 5745295 -143038177 - L2 LINE L2 -45 3227 3149 205 284 49 107 chr11 5745536 5745761 -143037711 - L2 LINE L2 -458 2856 2645 875 239 0 0 chr11 5745970 5746146 -143037326 - FRAM SINE Alu -2 174 1 967 303 130 23 chr11 5746146 5746661 -143036811 - L2 LINE L2 -954 2360 1791 431 279 38 94 chr11 5747104 5747391 -143036081 - L2 LINE L2 -7 3265 2995 224 0 0 61 chr11 5747545 5747578 -143035894 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 200 400 24 0 chr11 5747579 5747704 -143035768 + L2 LINE L2 2415 2542 -772 266 271 132 78 chr11 5747712 5747841 -143035631 + MIR3 SINE MIR 38 173 -35 278 300 0 0 chr11 5748168 5748238 -143035234 + L2 LINE L2 3197 3266 -6 257 283 261 7 chr11 5748294 5748432 -143035040 + L3 LINE CR1 1314 1486 -91 214 120 20 60 chr11 5748935 5748985 -143034487 + G-rich Low_complexity Low_complexity 3 50 0 26 82 0 0 chr11 5749444 5749505 -143033967 + GC_rich Low_complexity Low_complexity 1 61 0 213 237 0 41 chr11 5749585 5749682 -143033790 + C-rich Low_complexity Low_complexity 2 94 0 404 203 175 68 chr11 5750226 5750403 -143033069 - MIR SINE MIR -17 245 50 783 284 50 67 chr11 5751102 5751256 -143032216 + L2 LINE L2 2864 3019 -253 2391 58 0 32 chr11 5751256 5751565 -143031907 - AluY SINE Alu -12 299 1 783 284 50 67 chr11 5751565 5751826 -143031646 + L2 LINE L2 3019 3272 0 474 248 67 0 chr11 5756278 5756383 -143027089 - L2 LINE L2 -3 3310 3199 256 313 36 18 chr11 5758133 5758245 -143025227 - MIR SINE MIR -40 222 109 296 351 90 45 chr11 5759037 5759325 -143024147 + L2 LINE L2 1138 1438 -1876 206 300 58 4 chr11 5759405 5759476 -143023996 - MIR SINE MIR -133 75 3 296 286 101 8 chr11 5759485 5759604 -143023868 - MIR SINE MIR -10 252 123 2425 73 0 17 chr11 5759666 5759968 -143023504 - AluSg SINE Alu -13 297 1 188 329 14 14 chr11 5760280 5760350 -143023122 - MIR SINE MIR -173 89 20 1700 302 220 45 chr11 5760829 5762859 -143020613 + L2 LINE L2 665 3061 -211 2164 119 47 39 chr11 5763954 5764315 -143019157 - THE1B LTR MaLR 0 364 1 451 260 67 0 chr11 5765068 5765172 -143018300 + L2 LINE L2 3197 3307 -6 1793 134 28 14 chr11 5765503 5765794 -143017678 - AluSq SINE Alu -14 299 5 30 0 0 0 chr11 5765867 5765897 -143017575 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 5766016 5766037 -143017435 + (A)n Simple_repeat Simple_repeat 1 21 0 2266 99 3 7 chr11 5766041 5766345 -143017127 + AluSx SINE Alu 1 303 -9 359 279 108 29 chr11 5766348 5766588 -143016884 + L2 LINE L2 2033 2291 -1023 463 298 159 5 chr11 5767704 5767912 -143015560 - MIR SINE MIR -14 248 9 189 121 0 0 chr11 5770242 5770275 -143013197 + (CA)n Simple_repeat Simple_repeat 2 34 0 321 282 17 43 chr11 5770998 5771115 -143012357 - L2 LINE L2 -569 2745 2632 294 309 178 25 chr11 5771368 5771715 -143011757 + L2 LINE L2 2649 3057 -215 34 24 0 0 chr11 5772175 5772216 -143011256 + GC_rich Low_complexity Low_complexity 1 41 0 1119 288 168 42 chr11 5772917 5773940 -143009532 - L2 LINE L2 -209 3063 1916 1229 129 5 5 chr11 5773951 5774145 -143009327 - L1PA13 LINE L1 -14 6149 5956 2484 73 3 0 chr11 5774328 5774629 -143008843 + AluSg SINE Alu 1 302 -8 234 296 144 8 chr11 5776272 5776404 -143007068 - L2 LINE L2 -1003 2311 2162 206 290 194 11 chr11 5779454 5779547 -143003925 + MIR SINE MIR 20 129 -79 38 61 0 0 chr11 5780541 5780607 -143002865 + GC_rich Low_complexity Low_complexity 1 66 0 221 393 76 7 chr11 5781211 5781356 -143002116 - L2 LINE L2 -12 3260 3106 294 357 104 0 chr11 5781412 5781594 -143001878 - MIR SINE MIR -10 252 52 209 373 59 0 chr11 5781989 5782091 -143001381 - L2 LINE L2 -709 2605 2498 185 332 82 29 chr11 5782094 5782302 -143001170 - L2 LINE L2 -775 2539 2321 202 370 28 19 chr11 5786971 5787079 -142996393 - MIR SINE MIR -140 122 14 289 273 45 36 chr11 5788110 5788220 -142995252 + MIR SINE MIR 73 183 -79 286 343 82 40 chr11 5788673 5789151 -142994321 + L2 LINE L2 479 976 -2338 1432 233 110 21 chr11 5796278 5796812 -142986660 + Charlie1 DNA MER1_type 15 2761 0 487 261 0 49 chr11 5797478 5797620 -142985852 + MIR3 SINE MIR 9 143 -65 2578 179 31 17 chr11 5802894 5803414 -142980058 + MER82 DNA MER2_type 98 624 -29 239 267 0 0 chr11 5803672 5803732 -142979740 + L2 LINE L2 3254 3313 0 323 318 189 43 chr11 5804611 5804627 -142978845 + L2 LINE L2 1992 2004 -1310 1847 158 13 0 chr11 5804627 5804930 -142978542 - AluJo SINE Alu -5 307 1 792 167 8 0 chr11 5804930 5805056 -142978416 - FLAM_A SINE Alu -3 130 4 323 318 189 43 chr11 5805056 5805595 -142977877 + L2 LINE L2 2003 2629 -685 1194 174 38 9 chr11 5805630 5805843 -142977629 - MER20 DNA MER1_type 0 219 1 540 362 111 15 chr11 5805924 5806330 -142977142 + L2 LINE L2 2827 3271 -1 318 287 119 21 chr11 5806676 5806819 -142976653 + L2 LINE L2 2617 2773 -541 305 341 125 0 chr11 5807024 5807200 -142976272 + L2 LINE L2 3075 3272 0 1708 76 9 0 chr11 5807324 5807547 -142975925 + AluY SINE Alu 74 298 -13 240 111 0 0 chr11 5809933 5809969 -142973503 + (CAG)n Simple_repeat Simple_repeat 1 36 0 675 306 90 73 chr11 5810668 5811499 -142971973 - L2 LINE L2 -5 3267 2407 586 336 147 38 chr11 5811726 5812612 -142970860 + L2 LINE L2 1799 2780 -534 282 318 114 15 chr11 5812991 5813123 -142970349 + L2 LINE L2 3125 3269 -3 205 306 56 0 chr11 5813440 5813512 -142969960 + MIR SINE MIR 113 188 -74 281 305 13 7 chr11 5814431 5814585 -142968887 + (CA)n Simple_repeat Simple_repeat 2 156 0 511 298 61 15 chr11 5815967 5816170 -142967302 - MIR SINE MIR -13 249 40 631 321 154 16 chr11 5816503 5816952 -142966520 - L2 LINE L2 -981 2333 1823 772 226 179 0 chr11 5817054 5817266 -142966206 + MIR SINE MIR 2 251 -11 674 275 72 13 chr11 5817281 5817517 -142965955 + MIR SINE MIR 7 256 -6 207 135 0 27 chr11 5817562 5817599 -142965873 - MIR SINE MIR -64 144 109 407 312 18 0 chr11 5817986 5818095 -142965377 - L2 LINE L2 -6 3307 3197 245 288 50 0 chr11 5818394 5818474 -142964998 - MIR SINE MIR -77 185 102 212 83 0 28 chr11 5818529 5818565 -142964907 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 1243 332 112 49 chr11 5819483 5821215 -142962257 - L2 LINE L2 -41 3231 1376 767 314 134 21 chr11 5821174 5821934 -142961538 + L2 LINE L2 2427 3272 0 * 192 335 109 48 chr11 5822129 5822523 -142960949 - L2 LINE L2 -2227 1087 670 212 98 0 24 chr11 5823925 5823966 -142959506 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1334 162 37 26 chr11 5824255 5824643 -142958829 - L1M2 LINE L1 -743 5548 5160 1047 220 0 8 chr11 5824640 5824876 -142958596 - L1M2 LINE L1 -2267 3879 3646 * 5023 61 2 0 chr11 5824947 5825566 -142957906 - L1PA6 LINE L1 0 6154 5535 23 54 0 0 chr11 5825715 5825752 -142957720 + AT_rich Low_complexity Low_complexity 1 37 0 498 204 32 83 chr11 5826091 5826248 -142957224 - L1ME3A LINE L1 -3 6167 6019 870 215 158 13 chr11 5826435 5826663 -142956809 - MIR SINE MIR 0 262 2 220 272 150 45 chr11 5826828 5827074 -142956398 + L2 LINE L2 2219 2490 -824 309 316 12 37 chr11 5827582 5827976 -142955496 + GA-rich Low_complexity Low_complexity 1 384 0 * 326 300 18 41 chr11 5827848 5828018 -142955454 + G-rich Low_complexity Low_complexity 3 168 0 3285 70 2 4 chr11 5828123 5828596 -142954876 - L1P LINE L1 -987 5159 4688 720 324 71 32 chr11 5828606 5828846 -142954626 - LTR16C LTR ERVL 0 491 227 2054 162 75 15 chr11 5828846 5829248 -142954224 - MSTB LTR MaLR 0 426 1 720 324 71 32 chr11 5829248 5829414 -142954058 - LTR16C LTR ERVL -264 227 69 6587 64 26 0 chr11 5830096 5831651 -142951821 + L1PA7 LINE L1 4562 6148 -6 958 251 16 4 chr11 5831658 5831905 -142951567 + L1ME3A LINE L1 5574 5823 -347 1665 124 16 8 chr11 5831910 5832159 -142951313 + AluSg SINE Alu 1 251 -59 550 51 0 0 chr11 5832173 5832251 -142951221 + L1P LINE L1 4735 4812 -1334 235 122 82 0 chr11 5832256 5832305 -142951167 + AluSg SINE Alu 248 300 -2 887 254 46 37 chr11 5832305 5832655 -142950817 + L1ME3A LINE L1 5814 6166 -4 2139 186 60 4 chr11 5832733 5833200 -142950272 + MLT1D LTR MaLR 13 505 0 207 240 100 0 chr11 5833225 5833275 -142950197 + L2 LINE L2 3217 3271 -1 225 0 0 0 chr11 5835042 5835067 -142948405 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 870 95 44 0 chr11 5835092 5835229 -142948243 - L1MA3 LINE L1 -18 6287 6145 348 279 130 39 chr11 5835363 5835747 -142947725 + L1ME4a LINE L1 5672 6090 -31 974 181 46 3 chr11 5835893 5836096 -142947376 + MER20 DNA MER1_type 2 214 -5 838 201 11 11 chr11 5836861 5837040 -142946432 + MER66B LTR ERV1 1 179 -307 284 219 7 117 chr11 5837038 5837175 -142946297 + MER66B LTR ERV1 294 415 -71 * 8365 251 44 24 chr11 5837213 5840422 -142943050 + MER66-int LTR ERV1 1210 4225 -3531 1050 81 0 0 chr11 5840422 5840571 -142942901 - THE1B-int LTR MaLR -1431 149 1 2159 140 19 25 chr11 5840572 5840937 -142942535 - THE1B LTR MaLR -1 363 1 2340 93 0 3 chr11 5840988 5841289 -142942183 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 5842521 5842542 -142940930 + AT_rich Low_complexity Low_complexity 1 21 0 185 265 88 39 chr11 5844350 5844452 -142939020 + MIR SINE MIR 37 143 -119 793 275 16 0 chr11 5844497 5844685 -142938787 - MLT1E LTR MaLR -4 589 399 502 268 30 45 chr11 5844685 5844883 -142938589 + MLT1A1 LTR MaLR 2 196 -169 2166 227 85 5 chr11 5845491 5846067 -142937405 - MER92B LTR ERV1 0 636 15 209 330 137 30 chr11 5846124 5846357 -142937115 - L2 LINE L2 -189 3083 2826 410 318 81 38 chr11 5846957 5847218 -142936254 + L2 LINE L2 3029 3300 -13 2073 101 35 0 chr11 5847221 5847507 -142935965 + AluSq SINE Alu 1 296 -17 977 264 49 0 chr11 5848477 5848806 -142934666 - L1ME3A LINE L1 -208 5962 5618 4971 110 10 0 chr11 5848893 5849577 -142933895 - LTR8 LTR ERV1 0 691 1 244 178 56 22 chr11 5849855 5849945 -142933527 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 269 256 41 72 chr11 5850140 5850335 -142933137 - HAL1 LINE L1 -1166 1341 1153 2390 100 0 0 chr11 5850573 5850884 -142932588 - AluSx SINE Alu -1 311 1 250 227 120 0 chr11 5851000 5851075 -142932397 + MER5B DNA MER1_type 90 173 -5 2220 130 0 3 chr11 5852121 5852428 -142931044 + AluSq SINE Alu 1 306 -7 2128 114 0 3 chr11 5853540 5853837 -142929635 - AluSx SINE Alu -15 297 2 210 321 0 0 chr11 5854294 5854350 -142929122 - MIR SINE MIR -3 259 204 1717 212 62 58 chr11 5854441 5854960 -142928512 + MLT1E3 LTR MaLR 102 622 -2 1254 261 136 8 chr11 5854962 5855446 -142928026 + MLT1E-int LTR MaLR 1 602 -769 338 313 60 6 chr11 5855644 5855826 -142927646 + MLT1E-int LTR MaLR 696 887 -484 402 260 40 121 chr11 5856178 5856442 -142927030 + MLT1E-int LTR MaLR 1074 1309 -62 2006 138 65 6 chr11 5856442 5856796 -142926676 - THE1C LTR MaLR 0 375 1 402 260 40 121 chr11 5856796 5856854 -142926618 + MLT1E-int LTR MaLR 1309 1370 -1 1825 247 50 60 chr11 5856855 5857262 -142926210 + MLT1E LTR MaLR 1 402 -191 1130 219 75 64 chr11 5857262 5857623 -142925849 - MLT1A1 LTR MaLR 0 365 1 1825 247 50 60 chr11 5857623 5857814 -142925658 + MLT1E LTR MaLR 402 593 0 186 313 50 12 chr11 5857885 5857965 -142925507 - MIR SINE MIR -92 116 34 20611 30 3 0 chr11 5858361 5861619 -142921853 - L1PA4 LINE L1 -1 6154 2890 2283 120 0 0 chr11 5861894 5862203 -142921269 - AluSx SINE Alu -3 309 1 196 333 67 50 chr11 5863039 5863159 -142920313 - L2 LINE L2 -41 3231 3110 642 216 93 86 chr11 5863159 5863483 -142919989 + MER63B DNA MER1_type 6 331 -105 311 194 0 0 chr11 5863556 5863623 -142919849 + L1M4 LINE L1 5007 5073 -1073 5807 218 37 35 chr11 5863638 5864366 -142919106 - L1 LINE L1 -2977 3351 2626 2237 167 44 12 chr11 5864366 5864779 -142918693 + MSTB LTR MaLR 1 426 0 5807 218 37 35 chr11 5864779 5866119 -142917353 - L1 LINE L1 -3702 2626 1308 1709 183 3 7 chr11 5866119 5866414 -142917058 - AluJo SINE Alu -14 298 5 5807 218 37 35 chr11 5866414 5867723 -142915749 - L1 LINE L1 -5020 1308 2 266 303 48 7 chr11 5867729 5867874 -142915598 - L1MEc LINE L1 -4734 1662 1512 861 217 135 70 chr11 5868307 5868648 -142914824 - MLT1A1 LTR MaLR 0 365 3 22 0 0 0 chr11 5869254 5869276 -142914196 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 5876728 5876750 -142906722 + AT_rich Low_complexity Low_complexity 1 22 0 1532 126 40 0 chr11 5876873 5877095 -142906377 - AluSx SINE Alu -81 231 1 2129 126 3 0 chr11 5877600 5877902 -142905570 + AluSx SINE Alu 1 303 -9 7729 58 7 3 chr11 5878597 5879541 -142903931 - LTR13 LTR ERVK 0 1007 60 691 93 39 62 chr11 5879523 5879652 -142903820 - LTR13 LTR ERVK -881 126 1 * 2349 127 9 76 chr11 5879726 5879767 -142903705 + L1MA5 LINE L1 5876 5918 -382 2180 121 0 10 chr11 5879767 5880074 -142903398 + AluSx SINE Alu 1 304 -8 2349 127 9 76 chr11 5880074 5880422 -142903050 + L1MA5 LINE L1 5918 6234 -66 2193 99 26 118 chr11 5880422 5880835 -142902637 + L1PA12 LINE L1 5784 6161 -7 2349 127 9 76 chr11 5880835 5880892 -142902580 + L1MA5 LINE L1 6234 6293 -7 2418 71 0 10 chr11 5881328 5881623 -142901849 - AluSg SINE Alu -18 292 1 413 109 29 196 chr11 5882023 5882080 -142901392 + L1MA7 LINE L1 5917 5939 -352 2079 130 7 0 chr11 5882080 5882388 -142901084 + AluSx SINE Alu 1 310 -2 413 109 29 196 chr11 5882388 5882468 -142901004 + L1MA7 LINE L1 5939 6031 -260 402 262 179 24 chr11 5882555 5882723 -142900749 + MIR SINE MIR 37 230 -32 2219 103 20 3 chr11 5882905 5883206 -142900266 - AluSx SINE Alu -6 306 1 1003 305 89 10 chr11 5883599 5884015 -142899457 + LTR16A LTR ERVL 1 449 -1 966 214 68 19 chr11 5884971 5885177 -142898295 - MER20 DNA MER1_type -3 216 1 379 216 166 0 chr11 5885257 5885396 -142898076 - HAL1b LINE L1 -1 1347 1186 2383 89 0 0 chr11 5885497 5885790 -142897682 - AluSx SINE Alu -19 293 1 1474 77 6 0 chr11 5885971 5886152 -142897320 + AluSg/x SINE Alu 108 289 -21 921 147 96 189 chr11 5886299 5886632 -142896840 + AluSq SINE Alu 2 303 0 186 322 122 0 chr11 5886639 5886754 -142896718 + L2 LINE L2 3139 3267 -5 230 322 0 0 chr11 5888149 5888208 -142895264 - L2 LINE L2 -3 3269 3211 2059 165 75 71 chr11 5888222 5888713 -142894759 - MLT1D LTR MaLR 0 505 13 2805 245 65 26 chr11 5888783 5889684 -142893788 - L1ME3A LINE L1 0 6170 5238 548 229 41 46 chr11 5889749 5889967 -142893505 - Charlie2 DNA MER1_type -489 2373 2157 * 2296 269 60 95 chr11 5889961 5890391 -142893081 - Charlie2b DNA MER1_type -1512 1270 826 2152 125 0 13 chr11 5890391 5890703 -142892769 + AluSx SINE Alu 1 308 -4 2296 269 60 95 chr11 5890703 5891582 -142891890 - Charlie2b DNA MER1_type -1956 826 7 200 204 0 23 chr11 5891590 5891634 -142891838 + L2 LINE L2 3191 3233 -80 1974 95 12 0 chr11 5891640 5891892 -142891580 - AluSg SINE Alu -55 255 1 670 250 133 0 chr11 5891912 5892100 -142891372 + LTR33 LTR ERVL 1 213 -308 429 259 19 14 chr11 5892154 5892314 -142891158 + LTR33 LTR ERVL 319 513 -8 319 273 55 27 chr11 5892363 5892473 -142890999 + L2 LINE L2 2585 2697 -617 1770 118 0 0 chr11 5892474 5892720 -142890752 - Tigger3(Golem) DNA MER2_type -1 3028 2783 189 0 0 0 chr11 5892720 5892741 -142890731 + (T)n Simple_repeat Simple_repeat 1 21 0 1165 174 0 54 chr11 5892753 5892977 -142890495 - AluJo SINE Alu -100 212 1 540 332 78 27 chr11 5893061 5893436 -142890036 + L2 LINE L2 2699 3080 -192 2346 103 3 6 chr11 5893626 5893938 -142889534 + AluSq SINE Alu 1 311 -2 676 188 38 0 chr11 5894108 5894241 -142889231 + Charlie4 DNA MER1_type 17 154 -1807 540 202 118 45 chr11 5894260 5894438 -142889034 + Charlie4 DNA MER1_type 1770 1960 -1 1993 157 0 0 chr11 5894862 5895156 -142888316 + AluJo SINE Alu 1 294 -18 1365 211 33 15 chr11 5896336 5896673 -142886799 + MER97b DNA MER1_type? 1 343 -710 258 105 0 0 chr11 5896695 5896733 -142886739 + (T)n Simple_repeat Simple_repeat 1 38 0 4245 96 5 17 chr11 5896734 5897327 -142886145 - LTR8 LTR ERV1 -105 586 1 34778 103 86 73 chr11 5897327 5897789 -142885683 - HUERS-P1 LTR ERV1 0 6263 5808 1101 15 8 8 chr11 5897789 5897923 -142885549 - AluY SINE Alu -4 307 174 34778 103 86 73 chr11 5897923 5900073 -142883399 - HUERS-P1 LTR ERV1 -455 5808 3687 2903 16 0 0 chr11 5900073 5900414 -142883058 + SVA Other Other 1061 1401 0 34778 103 86 73 chr11 5900414 5900886 -142882586 - HUERS-P1 LTR ERV1 -2576 3687 3222 2342 100 0 0 chr11 5900886 5901186 -142882286 - AluY SINE Alu -11 300 1 34778 103 86 73 chr11 5901186 5902923 -142880549 - HUERS-P1 LTR ERV1 -3041 3222 1210 405 102 0 0 chr11 5902923 5902982 -142880490 + (CA)n Simple_repeat Simple_repeat 2 60 0 34778 103 86 73 chr11 5902982 5904208 -142879264 - HUERS-P1 LTR ERV1 -5053 1210 1 990 95 0 0 chr11 5904208 5904334 -142879138 - LTR8 LTR ERV1 0 691 566 551 195 18 26 chr11 5904348 5904461 -142879011 + MER97a DNA MER1_type? 393 504 -390 2395 68 0 10 chr11 5905502 5905795 -142877677 + AluSq SINE Alu 1 290 -23 1034 242 25 39 chr11 5906125 5906410 -142877062 - MLT1C LTR MaLR 0 467 187 2466 70 3 0 chr11 5906459 5906760 -142876712 - AluSx SINE Alu -10 302 1 209 200 0 0 chr11 5906760 5906800 -142876672 + (TATG)n Simple_repeat Simple_repeat 3 42 0 896 111 11 99 chr11 5906808 5906989 -142876483 - MLT1C LTR MaLR -302 165 1 335 272 183 27 chr11 5907044 5907268 -142876204 + MER97c DNA MER1_type? 767 1025 -65 27 29 0 0 chr11 5909082 5909116 -142874356 + AT_rich Low_complexity Low_complexity 1 34 0 2411 79 0 0 chr11 5910725 5911017 -142872455 + AluY SINE Alu 2 293 -18 187 208 113 0 chr11 5911368 5911421 -142872051 + L2 LINE L2 2584 2642 -672 2625 18 0 0 chr11 5912007 5912292 -142871180 + L1PA2 LINE L1 5871 6155 0 681 264 77 4 chr11 5912457 5912692 -142870780 + MER112 DNA MER1_type 2 253 -7 323 353 131 31 chr11 5912707 5913181 -142870291 + L2 LINE L2 2743 3266 -6 4551 160 43 46 chr11 5913584 5914779 -142868693 - L1MA9 LINE L1 -233 6079 4882 1704 175 7 14 chr11 5914779 5915076 -142868396 + AluJb SINE Alu 5 299 -13 4551 160 43 46 chr11 5915076 5915507 -142867965 - L1MA9 LINE L1 -1430 4882 4477 573 27 55 0 chr11 5915507 5915580 -142867892 - L1PA4 LINE L1 -1 6154 6078 4551 160 43 46 chr11 5915580 5915703 -142867769 - L1MA9 LINE L1 -1835 4477 4355 221 345 97 0 chr11 5915767 5915880 -142867592 + L2 LINE L2 3149 3272 0 1573 101 0 0 chr11 5916144 5916343 -142867129 - AluSq SINE Alu -114 199 1 207 114 0 0 chr11 5916512 5916547 -142866925 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 314 89 8 chr11 5916837 5917013 -142866459 - L2 LINE L2 -939 2375 2146 498 355 80 60 chr11 5917424 5918314 -142865158 - L2 LINE L2 -341 2973 2066 186 300 40 0 chr11 5918399 5918449 -142865023 + L2 LINE L2 3123 3174 -98 213 39 0 0 chr11 5919061 5919087 -142864385 + (A)n Simple_repeat Simple_repeat 1 26 0 2201 122 26 0 chr11 5919976 5920157 -142863315 - AluSx SINE Alu 0 312 118 282 29 0 0 chr11 5920157 5920192 -142863280 + (TG)n Simple_repeat Simple_repeat 2 36 0 2201 122 26 0 chr11 5920192 5920314 -142863158 - AluSx SINE Alu -194 118 1 3118 208 43 43 chr11 5920914 5921732 -142861740 + L1M4 LINE L1 3617 4434 -1712 271 238 105 29 chr11 5921935 5922040 -142861432 - MIR SINE MIR -114 148 36 218 333 14 14 chr11 5922096 5922168 -142861304 + L2 LINE L2 352 423 -2891 383 245 128 0 chr11 5922451 5922553 -142860919 - L2 LINE L2 0 3313 3199 227 356 52 17 chr11 5922557 5922672 -142860800 - L2 LINE L2 -15 3257 3139 800 216 167 39 chr11 5922848 5923130 -142860342 - L2 LINE L2 0 3313 2996 445 147 13 0 chr11 5924123 5924198 -142859274 - LTR33A LTR ERVL -1 522 447 2030 135 6 25 chr11 5924219 5924537 -142858935 + AluSx SINE Alu 1 312 0 430 219 76 90 chr11 5924537 5924641 -142858831 - LTR50 LTR ERVL -184 611 507 1762 178 7 0 chr11 5924641 5924945 -142858527 + AluJo SINE Alu 1 306 -6 430 219 76 90 chr11 5924945 5925020 -142858452 - LTR50 LTR ERVL -288 507 349 2235 120 3 0 chr11 5925023 5925323 -142858149 + AluSp SINE Alu 1 301 -12 737 266 145 0 chr11 5925326 5925567 -142857905 - LTR50 LTR ERVL -517 278 3 674 289 69 24 chr11 5925690 5925936 -142857536 + MIR SINE MIR 4 260 -2 1595 178 45 20 chr11 5925995 5926287 -142857185 + AluJb SINE Alu 1 299 -13 336 291 58 0 chr11 5926345 5926448 -142857024 + L3 LINE CR1 1270 1378 -199 309 298 0 43 chr11 5926647 5926788 -142856684 + GA-rich Low_complexity Low_complexity 1 135 0 2292 114 7 3 chr11 5927211 5927519 -142855953 - AluSx SINE Alu -3 309 1 731 309 73 36 chr11 5929302 5929632 -142853840 + L2 LINE L2 2542 2883 -431 369 331 59 52 chr11 5930430 5930720 -142852752 + L2 LINE L2 2932 3223 -49 222 37 0 0 chr11 5932050 5932077 -142851395 + (CAGCC)n Simple_repeat Simple_repeat 2 28 0 1082 284 39 70 chr11 5933048 5933253 -142850219 + L2 LINE L2 2834 3044 -269 2213 96 0 0 chr11 5933253 5933546 -142849926 - AluSg SINE Alu -17 293 1 1082 284 39 70 chr11 5933546 5933822 -142849650 + L2 LINE L2 3044 3300 -13 246 62 0 0 chr11 5933822 5933854 -142849618 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr11 5934025 5934053 -142849419 + AT_rich Low_complexity Low_complexity 1 28 0 3480 211 78 75 chr11 5934634 5935926 -142847546 - L1MC4 LINE L1 -89 7953 6658 1694 156 44 0 chr11 5936150 5936420 -142847052 + AluJb SINE Alu 1 282 -30 330 326 29 36 chr11 5938326 5938464 -142845008 - L2 LINE L2 -32 3240 3104 564 217 28 21 chr11 5938875 5939018 -142844454 - MER104 DNA Tc2 -2 178 35 224 224 105 13 chr11 5939066 5939142 -142844330 - MIR SINE MIR -16 246 164 258 32 0 0 chr11 5939539 5939570 -142843902 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 244 272 48 40 chr11 5939694 5939819 -142843653 - L2 LINE L2 -746 2568 2443 432 315 105 6 chr11 5939975 5940156 -142843316 - MIR SINE MIR -16 246 48 288 0 0 0 chr11 5942657 5942689 -142840783 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 293 57 36 chr11 5942765 5942905 -142840567 - LTR67 LTR ERVL -2 555 413 309 279 75 54 chr11 5942979 5943126 -142840346 - LTR67 LTR ERVL -311 246 97 802 218 53 0 chr11 5943356 5943544 -142839928 + L2 LINE L2 2146 2343 -971 1174 305 160 33 chr11 5943846 5944705 -142838767 + L2 LINE L2 2340 3308 -5 961 279 205 42 chr11 5947216 5947711 -142835761 + L2 LINE L2 2199 2831 -483 2221 86 3 0 chr11 5947711 5948001 -142835471 - AluY SINE Alu -20 291 1 961 279 205 42 chr11 5948001 5948169 -142835303 + L2 LINE L2 2831 2970 -344 331 368 0 0 chr11 5951327 5951463 -142832009 + CT-rich Low_complexity Low_complexity 1 136 0 880 199 42 0 chr11 5951617 5951783 -142831689 + MIR SINE MIR 88 260 -2 476 204 52 64 chr11 5951823 5951995 -142831477 - MLT1D LTR MaLR -275 230 61 188 321 24 12 chr11 5954374 5954458 -142829014 - L3 LINE CR1 -541 1036 952 1258 302 132 29 chr11 5954499 5955499 -142827973 + L2 LINE L2 1944 3038 -234 182 262 48 0 chr11 5955670 5955712 -142827760 + L2 LINE L2 3176 3219 -94 1727 174 27 0 chr11 5955752 5956050 -142827422 - AluJb SINE Alu -6 306 1 436 179 74 0 chr11 5956062 5956157 -142827315 - MIR SINE MIR 0 262 161 345 214 39 68 chr11 5956156 5956248 -142827224 + MIR SINE MIR 91 181 -81 * 197 65 32 0 chr11 5956248 5956279 -142827193 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 5959800 5959821 -142823651 + (TCC)n Simple_repeat Simple_repeat 2 22 0 734 159 18 0 chr11 5960939 5961052 -142822420 + FLAM_C SINE Alu 9 123 -20 3071 226 74 43 chr11 5961163 5961230 -142822242 - L1MEc LINE L1 -2683 3463 3400 1436 155 79 94 chr11 5961230 5961538 -142821934 + THE1C LTR MaLR 1 303 -72 2148 107 0 0 chr11 5961538 5961827 -142821645 - AluSq SINE Alu -24 289 1 1436 155 79 94 chr11 5961827 5961899 -142821573 + THE1C LTR MaLR 303 375 0 3071 226 74 43 chr11 5961899 5961982 -142821490 - L1MEc LINE L1 -2746 3400 3321 726 147 16 39 chr11 5961982 5962111 -142821361 - FLAM_A SINE Alu -7 126 1 2156 92 0 3 chr11 5962116 5962408 -142821064 - AluSc SINE Alu -18 291 1 3071 226 74 43 chr11 5962408 5963469 -142820003 - L1MEc LINE L1 -2828 3318 2234 549 286 95 29 chr11 5963748 5963989 -142819483 + MIR SINE MIR 6 262 0 393 338 186 29 chr11 5964239 5964550 -142818922 - L2 LINE L2 -9 3263 2904 533 307 161 8 chr11 5964653 5965031 -142818441 - L2 LINE L2 -752 2562 2127 2218 176 76 44 chr11 5966352 5966860 -142816612 + L1MB8 LINE L1 4757 5288 -858 2018 134 0 7 chr11 5966860 5967166 -142816306 + AluSx SINE Alu 1 304 -8 2218 176 76 44 chr11 5967166 5967248 -142816224 + L1MB8 LINE L1 5288 5366 -780 3882 174 18 45 chr11 5967275 5968414 -142815058 + L1MCb LINE L1 335 1438 -4849 716 186 20 17 chr11 5968415 5968699 -142814773 + GA-rich Low_complexity Low_complexity 1 284 0 734 175 134 31 chr11 5968701 5968924 -142814548 + L1MCb LINE L1 1405 1650 -4914 * 3670 155 23 84 chr11 5968906 5968951 -142814521 + L1MB8 LINE L1 5354 5400 -778 2062 132 3 7 chr11 5968951 5969261 -142814211 + AluSx SINE Alu 2 310 -2 3670 155 23 84 chr11 5969261 5970088 -142813384 + L1MB8 LINE L1 5400 6173 -5 31 0 0 0 chr11 5970305 5970336 -142813136 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 5971128 5971152 -142812320 + AT_rich Low_complexity Low_complexity 1 24 0 280 310 122 109 chr11 5972461 5972790 -142810682 - L2 LINE L2 -3 3269 2937 339 198 99 20 chr11 5972971 5973072 -142810400 + L1MC3 LINE L1 6988 7096 -689 405 171 89 24 chr11 5973100 5973184 -142810288 + MLT1F1 LTR MaLR 45 133 -442 1963 169 92 10 chr11 5973185 5973576 -142809896 + L1MD3 LINE L1 7416 7838 -157 756 168 0 23 chr11 5973583 5973714 -142809758 + AluJo SINE Alu 7 134 -178 1324 173 7 83 chr11 5973723 5974023 -142809449 + AluJb SINE Alu 1 277 -35 925 214 0 0 chr11 5974030 5974220 -142809252 + AluJo SINE Alu 127 316 0 390 196 39 10 chr11 5974229 5974331 -142809141 + L1MD2 LINE L1 6255 6359 0 302 297 123 13 chr11 5974374 5974529 -142808943 + MLT1K LTR MaLR 398 569 -19 632 339 121 40 chr11 5974603 5974768 -142808704 + L2 LINE L2 1859 2009 -1305 2106 97 10 3 chr11 5974768 5975057 -142808415 - AluSg SINE Alu -13 297 7 632 339 121 40 chr11 5975057 5975771 -142807701 + L2 LINE L2 2009 2881 -433 335 324 125 37 chr11 5975836 5976163 -142807309 + L2 LINE L2 2916 3271 -1 783 271 59 65 chr11 5976190 5976729 -142806743 + L2 LINE L2 1685 2220 -1094 269 289 115 78 chr11 5978170 5978751 -142804721 + L2 LINE L2 1479 2081 -1233 469 268 74 21 chr11 5978785 5978975 -142804497 + L2 LINE L2 3114 3313 0 2145 122 0 3 chr11 5979444 5979738 -142803734 + AluSx SINE Alu 5 297 -15 2361 108 0 0 chr11 5979838 5980148 -142803324 + AluSg SINE Alu 1 307 -3 2624 42 0 7 chr11 5982892 5983199 -142800273 + AluY SINE Alu 1 305 -6 1888 213 60 112 chr11 5983225 5983981 -142799491 + L2 LINE L2 2247 2962 -352 808 159 15 0 chr11 5984017 5984149 -142799323 - FLAM_C SINE Alu -9 134 1 1767 164 49 4 chr11 5984149 5984501 -142798971 + MLT2B1 LTR ERVL 2 418 -97 233 154 0 0 chr11 5984495 5984534 -142798938 + MLT2B1 LTR ERVL 372 410 -4 * 2071 204 49 62 chr11 5984540 5985156 -142798316 - MLT1E2 LTR MaLR -6 620 23 3941 107 27 4 chr11 5985156 5985671 -142797801 - MER1A DNA MER1_type 0 527 1 2071 204 49 62 chr11 5985671 5985694 -142797778 - MLT1E2 LTR MaLR -603 23 1 864 264 204 39 chr11 5985702 5986108 -142797364 - MLT1J LTR MaLR -30 481 9 781 261 116 10 chr11 5986135 5986445 -142797027 + L2 LINE L2 2962 3304 -9 761 254 142 5 chr11 5986477 5986682 -142796790 + MIR SINE MIR 14 246 -16 924 181 12 12 chr11 5986852 5987018 -142796454 + AluJb SINE Alu 140 305 -7 330 324 97 0 chr11 5987052 5987228 -142796244 + L2 LINE L2 1219 1411 -1903 2182 121 41 89 chr11 5987240 5987419 -142796053 - MLT2C1 LTR ERVL -2 395 209 862 191 56 31 chr11 5987419 5987581 -142795891 - FRAM SINE Alu 0 166 1 2182 121 41 89 chr11 5987581 5987816 -142795656 - MLT2C1 LTR ERVL -188 209 1 792 242 34 86 chr11 5987982 5988135 -142795337 - L2 LINE L2 -6 3307 3178 2130 85 0 4 chr11 5988135 5988407 -142795065 + AluY SINE Alu 35 305 -6 792 242 34 86 chr11 5988407 5988580 -142794892 - L2 LINE L2 -135 3178 2998 311 333 44 90 chr11 5988585 5988608 -142794864 + L2 LINE L2 2967 2990 -282 1930 136 0 36 chr11 5988608 5988917 -142794555 - AluJo SINE Alu -14 298 1 311 333 44 90 chr11 5988917 5989214 -142794258 + L2 LINE L2 2990 3272 0 2063 122 3 10 chr11 5989650 5989981 -142793491 - AluSx SINE Alu 0 312 1 25 0 0 0 chr11 5991957 5991982 -142791490 + AT_rich Low_complexity Low_complexity 1 25 0 299 241 0 0 chr11 5992752 5992810 -142790662 - L2 LINE L2 -1 3271 3214 28 29 0 0 chr11 5995570 5995605 -142787867 + AT_rich Low_complexity Low_complexity 1 35 0 263 257 109 17 chr11 5995612 5995778 -142787694 + L1ME LINE L1 5658 5845 -325 2063 236 52 29 chr11 5996003 5996525 -142786947 - MER87 LTR ERV1 -7 534 1 5595 221 29 43 chr11 5997021 5997514 -142785958 - L1MA8 LINE L1 -5 6286 5788 225 0 0 0 chr11 5997514 5997539 -142785933 + (TG)n Simple_repeat Simple_repeat 2 26 0 5595 221 29 43 chr11 5997539 5997555 -142785917 - L1MA8 LINE L1 -503 5788 5773 225 0 0 0 chr11 5997555 5997580 -142785892 + (CA)n Simple_repeat Simple_repeat 2 26 0 5595 221 29 43 chr11 5997580 5998043 -142785429 - L1MA8 LINE L1 -518 5773 5305 2434 77 3 0 chr11 5998043 5998343 -142785129 - AluY SINE Alu -10 301 1 5595 221 29 43 chr11 5998343 6000125 -142783347 - L1MA8 LINE L1 -986 5305 3581 225 130 0 22 chr11 6000136 6000182 -142783290 - L1MA8 LINE L1 -2699 3447 3403 388 321 88 38 chr11 6000289 6000551 -142782921 - L1ME LINE L1 -454 5667 5393 23 0 0 0 chr11 6000902 6000925 -142782547 + AT_rich Low_complexity Low_complexity 1 23 0 293 278 19 9 chr11 6001103 6001211 -142782261 - L1ME LINE L1 -1525 4621 4513 696 301 141 19 chr11 6001231 6001770 -142781702 + L2 LINE L2 1330 1934 -1380 243 88 0 0 chr11 6001770 6001804 -142781668 + (TA)n Simple_repeat Simple_repeat 2 35 0 1030 17 8 0 chr11 6001807 6001926 -142781546 - L1PA5 LINE L1 0 6154 6035 494 263 97 14 chr11 6002554 6002771 -142780701 - Charlie7 DNA MER1_type -575 2037 1803 2635 184 82 24 chr11 6002776 6003239 -142780233 - L1MD1 LINE L1 -179 6063 5553 978 103 314 0 chr11 6003239 6003414 -142780058 - MER30 DNA MER1_type 0 230 1 2635 184 82 24 chr11 6003414 6003575 -142779897 - L1MD1 LINE L1 -689 5553 5403 195 42 0 0 chr11 6003614 6003638 -142779834 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 282 315 22 16 chr11 6004137 6004321 -142779151 - AluJb SINE Alu -10 292 108 845 211 77 35 chr11 6004616 6004690 -142778782 - L1MB7 LINE L1 -304 5880 5811 1786 180 0 0 chr11 6004690 6005005 -142778467 - AluSx SINE Alu 0 315 1 845 211 77 35 chr11 6005005 6005189 -142778283 - L1MB7 LINE L1 -373 5811 5610 1409 199 15 7 chr11 6005193 6005544 -142777928 - L1MB7 LINE L1 -714 5470 5118 466 294 121 9 chr11 6007581 6007812 -142775660 - MIR SINE MIR -1 261 5 1404 201 33 23 chr11 6008124 6008237 -142775235 + AluJo SINE Alu 2 112 -200 405 0 0 0 chr11 6008237 6008282 -142775190 + (CA)n Simple_repeat Simple_repeat 2 46 0 1404 201 33 23 chr11 6008282 6008467 -142775005 + AluJo SINE Alu 112 303 -9 596 258 62 49 chr11 6009281 6009617 -142773855 - L1M1 LINE L1 -563 5741 5406 1136 124 0 0 chr11 6009622 6009783 -142773689 - AluSq SINE Alu -24 289 129 563 314 86 37 chr11 6009814 6010323 -142773149 - L2 LINE L2 -1076 2238 1705 673 133 0 0 chr11 6010325 6010462 -142773010 - AluSg/x SINE Alu 0 327 191 235 333 135 0 chr11 6010467 6010593 -142772879 - L2 LINE L2 -1814 1500 1358 556 240 23 0 chr11 6011823 6011952 -142771520 - FLAM_C SINE Alu -10 133 2 289 306 50 91 chr11 6011993 6012278 -142771194 - L2 LINE L2 -410 2904 2632 2525 143 105 16 chr11 6012278 6012726 -142770746 + LTR45B LTR ERV1 2 489 0 289 306 50 91 chr11 6012726 6012760 -142770712 - L2 LINE L2 -682 2632 2598 237 113 57 19 chr11 6013162 6013215 -142770257 - MIR3 SINE MIR -7 201 147 432 0 0 0 chr11 6013824 6013872 -142769600 + (TG)n Simple_repeat Simple_repeat 2 49 0 1525 151 0 99 chr11 6013873 6014185 -142769287 - AluJb SINE Alu -27 285 5 254 303 61 24 chr11 6014333 6014498 -142768974 - MIR SINE MIR -73 189 19 184 352 11 11 chr11 6019323 6019411 -142764061 + L2 LINE L2 2228 2315 -999 2377 93 0 0 chr11 6020060 6020361 -142763111 - AluY SINE Alu -10 301 1 23 0 0 0 chr11 6020576 6020599 -142762873 + AT_rich Low_complexity Low_complexity 1 23 0 184 264 69 69 chr11 6020617 6020704 -142762768 - MIR SINE MIR -158 104 18 200 136 0 68 chr11 6020938 6020982 -142762490 + MIR SINE MIR 222 262 0 3443 70 5 0 chr11 6021498 6021938 -142761534 - THE1B-int LTR MaLR -1138 442 1 1124 131 15 50 chr11 6021938 6022136 -142761336 - THE1B LTR MaLR 0 364 174 775 33 0 0 chr11 6022136 6022227 -142761245 - AluYb8 SINE Alu -2 316 226 5344 145 10 6 chr11 6022421 6023348 -142760124 + L1PA12 LINE L1 5166 6098 -70 2190 113 0 0 chr11 6023403 6023686 -142759786 + AluSc SINE Alu 1 283 -26 383 322 27 14 chr11 6024010 6024156 -142759316 + L2 LINE L2 3154 3301 -12 310 316 42 53 chr11 6024181 6024371 -142759101 - MIR SINE MIR -67 195 8 198 0 0 0 chr11 6024847 6024869 -142758603 + (T)n Simple_repeat Simple_repeat 1 22 0 1556 106 55 0 chr11 6025344 6025562 -142757910 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6026102 6026276 -142757196 - L2 LINE L2 -251 3021 2838 283 91 0 45 chr11 6026578 6026622 -142756850 - THE1C LTR MaLR -333 42 1 2116 75 33 23 chr11 6026632 6026939 -142756533 - THE1C-int LTR MaLR -11 1569 1260 875 170 61 31 chr11 6026948 6027162 -142756310 - THE1C LTR MaLR -191 184 1 2399 75 7 0 chr11 6027222 6027515 -142755957 + AluY SINE Alu 1 295 -16 265 347 155 19 chr11 6027521 6027792 -142755680 - L2 LINE L2 -626 2688 2381 13771 72 7 1 chr11 6027954 6029716 -142753756 + PABL_A-int LTR ERV1 3243 5015 0 4884 68 39 45 chr11 6029716 6029975 -142753497 + PABL_A LTR ERV1 1 260 -400 348 0 0 23 chr11 6029975 6030019 -142753453 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1942 129 0 18 chr11 6030019 6030306 -142753166 - AluY SINE Alu -30 281 1 4884 68 39 45 chr11 6030306 6030708 -142752764 + PABL_A LTR ERV1 258 660 0 312 349 85 25 chr11 6030709 6030944 -142752528 - L2 LINE L2 -468 2846 2598 197 195 0 0 chr11 6031460 6031501 -142751971 + MIR3 SINE MIR 161 201 -7 321 297 45 74 chr11 6031889 6032158 -142751314 + L2 LINE L2 2598 2858 -456 206 333 143 9 chr11 6032269 6032374 -142751098 + MIR SINE MIR 27 145 -63 431 345 110 44 chr11 6033155 6033474 -142749998 + L2 LINE L2 2933 3272 0 6376 79 15 30 chr11 6033990 6034925 -142748547 - THE1B-int LTR MaLR -659 921 1 2107 121 53 31 chr11 6034925 6035281 -142748191 - THE1B LTR MaLR 0 364 1 2331 173 32 12 chr11 6035281 6035777 -142747695 - L1MC3 LINE L1 -575 7210 6705 5107 137 9 6 chr11 6035925 6036853 -142746619 + L1PA12 LINE L1 5166 6098 -70 2326 102 0 0 chr11 6036909 6037203 -142746269 + AluSc SINE Alu 1 294 -15 371 329 27 14 chr11 6037519 6037665 -142745807 + L2 LINE L2 3154 3301 -12 329 316 42 53 chr11 6037690 6037880 -142745592 - MIR SINE MIR -67 195 8 234 0 0 0 chr11 6038351 6038377 -142745095 + (T)n Simple_repeat Simple_repeat 1 26 0 1428 110 55 0 chr11 6038853 6039071 -142744401 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6039611 6039785 -142743687 - L2 LINE L2 -251 3021 2838 22 0 0 0 chr11 6039834 6039856 -142743616 + AT_rich Low_complexity Low_complexity 1 22 0 348 179 26 0 chr11 6039909 6040026 -142743446 + (TA)n Simple_repeat Simple_repeat 1 120 0 200 175 29 10 chr11 6040055 6040158 -142743314 + (TA)n Simple_repeat Simple_repeat 2 106 0 345 209 146 32 chr11 6040167 6040325 -142743147 - L1ME4a LINE L1 -23 6098 5923 622 256 93 15 chr11 6040515 6040847 -142742625 - Charlie7 DNA MER1_type -452 2160 1803 2355 190 81 26 chr11 6040852 6041315 -142742157 - L1MD1 LINE L1 -179 6063 5543 905 97 314 0 chr11 6041315 6041490 -142741982 - MER30 DNA MER1_type 0 230 1 2355 190 81 26 chr11 6041490 6041682 -142741790 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6041690 6041714 -142741758 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 302 306 79 104 chr11 6041719 6042160 -142741312 - HAL1 LINE L1 -1046 1461 1032 1965 139 0 0 chr11 6042203 6042504 -142740968 - AluSx SINE Alu 0 301 1 1929 166 0 6 chr11 6042728 6043042 -142740430 - AluJb SINE Alu 0 312 1 305 291 92 28 chr11 6043136 6043277 -142740195 - HAL1b LINE L1 -869 479 330 255 282 86 61 chr11 6043383 6043546 -142739926 + L2 LINE L2 2621 2787 -527 31 26 0 0 chr11 6043642 6043680 -142739792 + AT_rich Low_complexity Low_complexity 1 38 0 188 241 35 0 chr11 6044097 6044155 -142739317 + MIR SINE MIR 99 158 -104 2537 40 3 7 chr11 6045936 6046239 -142737233 - AluY SINE Alu -9 302 1 551 327 19 34 chr11 6046782 6047103 -142736369 - L1ME4a LINE L1 -2077 5731 5416 1623 177 14 31 chr11 6047478 6047772 -142735700 - AluJo SINE Alu -15 297 9 1667 154 56 36 chr11 6047797 6048103 -142735369 - AluSx SINE Alu 0 312 1 201 344 135 50 chr11 6048504 6049059 -142734413 - L2 LINE L2 -348 2966 2365 219 293 187 0 chr11 6049234 6049357 -142734115 - L2 LINE L2 0 3313 3168 627 281 24 0 chr11 6049605 6049772 -142733700 + MIR SINE MIR 92 262 0 440 293 117 59 chr11 6049886 6050070 -142733402 + L2 LINE L2 2949 3121 -192 189 0 0 0 chr11 6050070 6050091 -142733381 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2105 99 7 0 chr11 6050091 6050375 -142733097 - AluSp SINE Alu -27 286 1 440 293 117 59 chr11 6050375 6050530 -142732942 + L2 LINE L2 3120 3309 -4 183 371 0 0 chr11 6050630 6050692 -142732780 - MIR SINE MIR -1 261 200 7254 36 1 21 chr11 6052761 6054203 -142729269 + L1PA5 LINE L1 4722 6145 -9 22 0 0 0 chr11 6054486 6054508 -142728964 + AT_rich Low_complexity Low_complexity 1 22 0 467 292 15 22 chr11 6054581 6054718 -142728754 - L2 LINE L2 -9 3304 3169 2150 210 12 37 chr11 6055498 6056013 -142727459 + MLT1D LTR MaLR 4 505 0 438 301 180 49 chr11 6056102 6056418 -142727054 + L2 LINE L2 1390 1663 -1651 771 120 40 13 chr11 6056418 6056568 -142726904 - L1MB8 LINE L1 -11 6167 6014 438 301 180 49 chr11 6056568 6056863 -142726609 + L2 LINE L2 1663 2081 -1233 506 148 31 39 chr11 6056954 6057082 -142726390 - L1MA10 LINE L1 -1 6333 6207 345 244 24 85 chr11 6057105 6057269 -142726203 + L2 LINE L2 2255 2408 -906 6425 176 14 11 chr11 6057700 6059066 -142724406 - MSTB-int LTR MaLR -219 1361 1 748 164 22 0 chr11 6059066 6059200 -142724272 - MSTB LTR MaLR -2 424 288 23 54 0 0 chr11 6061926 6061963 -142721509 + AT_rich Low_complexity Low_complexity 1 37 0 1827 168 10 0 chr11 6063878 6064170 -142719302 - AluSx SINE Alu -17 295 1 917 132 0 22 chr11 6064277 6064413 -142719059 + FLAM_C SINE Alu 1 133 0 356 371 65 12 chr11 6064995 6065316 -142718156 + HAL1b LINE L1 95 432 -916 2318 87 3 0 chr11 6066130 6066430 -142717042 + AluY SINE Alu 1 301 -10 532 313 102 23 chr11 6066768 6067110 -142716362 + L1MB1 LINE L1 3590 3958 -2188 2117 128 0 19 chr11 6067466 6067778 -142715694 + AluSx SINE Alu 2 307 -5 25 65 0 0 chr11 6068060 6068106 -142715366 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr11 6068163 6068192 -142715280 + AT_rich Low_complexity Low_complexity 1 29 0 206 227 0 0 chr11 6068498 6068542 -142714930 + A-rich Low_complexity Low_complexity 4 47 0 34 65 0 0 chr11 6068553 6068615 -142714857 + AT_rich Low_complexity Low_complexity 1 62 0 4250 176 27 31 chr11 6068685 6068935 -142714537 + L1MB1 LINE L1 4778 5028 -1140 1830 149 4 0 chr11 6068935 6069210 -142714262 + AluSp SINE Alu 30 305 -8 4250 176 27 31 chr11 6069210 6070349 -142713123 + L1MB1 LINE L1 5028 6161 -7 22 0 0 0 chr11 6070757 6070779 -142712693 + AT_rich Low_complexity Low_complexity 1 22 0 192 308 6 141 chr11 6070855 6071011 -142712461 - MIR SINE MIR -79 183 49 462 195 11 0 chr11 6071198 6071285 -142712187 - MER58B DNA MER1_type 0 341 254 180 0 0 0 chr11 6071312 6071332 -142712140 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 708 237 59 23 chr11 6071391 6071610 -142711862 - MER58B DNA MER1_type -114 227 1 2154 107 4 0 chr11 6071999 6072309 -142711163 + AluSx SINE Alu 1 311 0 246 292 63 69 chr11 6073536 6073709 -142709763 + MIR SINE MIR 11 183 -79 566 320 63 5 chr11 6073814 6074036 -142709436 - L2 LINE L2 -1 3312 3078 236 167 17 33 chr11 6074276 6074336 -142709136 + L1MC/D LINE L1 5711 5769 -2039 302 307 76 43 chr11 6074889 6075469 -142708003 - LTR57-int LTR ERVL -2560 2783 2225 1602 194 32 55 chr11 6075580 6076014 -142707458 - LTR47B LTR ERVL -19 424 1 448 303 98 57 chr11 6076549 6076916 -142706556 + L2 LINE L2 2877 3258 -55 205 349 46 46 chr11 6076939 6077091 -142706381 - L2 LINE L2 -654 2660 2509 2281 101 0 0 chr11 6077099 6077387 -142706085 + AluSx SINE Alu 13 300 -12 2461 80 0 0 chr11 6077963 6078264 -142705208 + AluY SINE Alu 1 301 -10 181 331 57 38 chr11 6078913 6079070 -142704402 - L2 LINE L2 -999 2315 2156 194 182 0 68 chr11 6079269 6079313 -142704159 - MIR SINE MIR 0 262 222 188 287 58 58 chr11 6079547 6079634 -142703838 + MIR SINE MIR 18 104 -158 23 0 0 0 chr11 6079652 6079675 -142703797 + AT_rich Low_complexity Low_complexity 1 23 0 2395 89 0 3 chr11 6079890 6080192 -142703280 + AluSg SINE Alu 1 301 -9 208 173 40 40 chr11 6080226 6080301 -142703171 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1617 165 6 84 chr11 6080460 6080794 -142702678 - AluJo SINE Alu -4 308 1 391 300 47 88 chr11 6080834 6081119 -142702353 - L2 LINE L2 -410 2904 2632 2341 145 102 16 chr11 6081119 6081568 -142701904 + LTR45B LTR ERV1 2 489 0 391 300 47 88 chr11 6081568 6081602 -142701870 - L2 LINE L2 -682 2632 2598 211 340 112 15 chr11 6081650 6081847 -142701625 - L2 LINE L2 -1105 2209 1994 236 113 57 19 chr11 6082004 6082057 -142701415 - MIR3 SINE MIR -7 201 147 423 0 0 0 chr11 6082668 6082715 -142700757 + (TG)n Simple_repeat Simple_repeat 2 48 0 1534 154 0 99 chr11 6082716 6083028 -142700444 - AluJb SINE Alu -27 285 5 570 281 51 6 chr11 6083175 6083353 -142700119 - MIR SINE MIR -73 189 4 476 325 102 11 chr11 6083780 6084054 -142699418 + L2 LINE L2 2570 2868 -446 1599 232 30 48 chr11 6084068 6084733 -142698739 - L1M4 LINE L1 -2468 4176 3524 4537 180 49 5 chr11 6084757 6085232 -142698240 - L1MA7 LINE L1 -22 6269 5817 1806 171 44 21 chr11 6085232 6085572 -142697900 - MER7A DNA MER2_type 0 346 1 4537 180 49 5 chr11 6085572 6086699 -142696773 - L1MA7 LINE L1 -474 5817 4590 1186 198 90 0 chr11 6086699 6086967 -142696505 - MSTB1 LTR MaLR -140 292 1 1821 160 57 19 chr11 6086967 6087386 -142696086 - L1MA7 LINE L1 -1707 4439 4005 2422 173 6 35 chr11 6087389 6087870 -142695602 - MER52A LTR ERV1 0 1755 1289 4004 167 118 156 chr11 6088117 6088782 -142694690 - L1 LINE L1 -863 5283 4594 912 207 119 0 chr11 6088782 6089043 -142694429 - MSTB1 LTR MaLR -140 292 1 4004 167 118 156 chr11 6089043 6089466 -142694006 - L1 LINE L1 -1552 4594 4157 8214 165 112 23 chr11 6089466 6091078 -142692394 - MER52A LTR ERV1 0 1755 1 4004 167 118 156 chr11 6091078 6091605 -142691867 - L1 LINE L1 -1989 4157 3478 839 244 32 8 chr11 6091782 6092032 -142691440 - L1M4 LINE L1 -6256 286 31 367 311 73 23 chr11 6092202 6092421 -142691051 + MIR SINE MIR 33 262 0 2626 40 0 3 chr11 6092590 6092893 -142690579 - AluY SINE Alu -9 302 1 1194 151 8 40 chr11 6093159 6093231 -142690241 + L1MA8 LINE L1 6032 6105 -186 1947 172 52 41 chr11 6093231 6093650 -142689822 - MSTB LTR MaLR 0 426 3 1194 151 8 40 chr11 6093650 6093828 -142689644 + L1MA8 LINE L1 6105 6274 -17 2282 101 0 16 chr11 6093852 6094158 -142689314 + AluSg SINE Alu 1 301 -9 552 122 0 11 chr11 6094158 6094248 -142689224 + L1MB3 LINE L1 6055 6143 -40 290 177 32 0 chr11 6094254 6094316 -142689156 + L1 LINE L1 3816 3879 -2267 332 238 148 8 chr11 6094370 6094492 -142688980 + LTR37B LTR ERV1 330 468 0 21 0 0 0 chr11 6094544 6094565 -142688907 + AT_rich Low_complexity Low_complexity 1 21 0 2293 232 35 3 chr11 6095004 6095608 -142687864 + L1ME1 LINE L1 5539 6161 -5 22 35 0 0 chr11 6095741 6095770 -142687702 + AT_rich Low_complexity Low_complexity 1 29 0 370 346 54 19 chr11 6095906 6096111 -142687361 - HAL1 LINE L1 -869 1638 1427 420 249 30 117 chr11 6101132 6101329 -142682143 + MIR SINE MIR 70 249 -13 441 66 0 0 chr11 6101449 6101510 -142681962 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 283 22 36 chr11 6101545 6101683 -142681789 - L1ME LINE L1 -510 5656 5521 224 341 135 0 chr11 6102481 6102607 -142680865 + L2 LINE L2 1358 1500 -1814 639 133 0 0 chr11 6102612 6102753 -142680719 + AluSg/x SINE Alu 194 334 0 723 312 84 37 chr11 6102755 6103265 -142680207 + L2 LINE L2 1705 2238 -1076 1192 107 0 18 chr11 6103296 6103454 -142680018 + AluSq SINE Alu 129 288 -25 224 30 30 0 chr11 6103454 6103487 -142679985 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3742 185 19 28 chr11 6103488 6104370 -142679102 + L1MA9 LINE L1 5439 6312 0 736 259 38 46 chr11 6105553 6105900 -142677572 - L1MD3 LINE L1 0 7995 7652 557 284 24 47 chr11 6106406 6106617 -142676855 + L3 LINE CR1 765 970 -607 279 354 71 0 chr11 6107872 6107999 -142675473 - L2 LINE L2 0 3272 3137 426 331 41 6 chr11 6109971 6110143 -142673329 - MIR SINE MIR -26 236 59 191 284 178 58 chr11 6111390 6111598 -142671874 + L2 LINE L2 2620 2852 -462 469 261 127 13 chr11 6113827 6113984 -142669488 + MIR SINE MIR 73 247 -15 8023 161 24 8 chr11 6114325 6115641 -142667831 - MSTA-int LTR MaLR -221 1430 89 2725 95 92 5 chr11 6115641 6116053 -142667419 + LTR7 LTR ERV1 1 448 -2 8023 161 24 8 chr11 6116053 6116144 -142667328 - MSTA-int LTR MaLR -1562 89 1 1905 161 39 14 chr11 6116144 6116499 -142666973 - MSTA LTR MaLR 0 428 65 1681 132 68 37 chr11 6116511 6116836 -142666636 - LTR10A LTR ERV1 -61 548 214 273 253 126 0 chr11 6116858 6116945 -142666527 - LTR10A LTR ERV1 -511 98 1 432 149 0 0 chr11 6116947 6117014 -142666458 - MSTA LTR MaLR -361 67 1 554 292 116 4 chr11 6117840 6118073 -142665399 - MIR SINE MIR 0 262 4 1442 195 47 30 chr11 6118384 6118497 -142664975 + AluJo SINE Alu 2 112 -200 387 0 0 0 chr11 6118497 6118540 -142664932 + (CA)n Simple_repeat Simple_repeat 2 44 0 1442 195 47 30 chr11 6118540 6118723 -142664749 + AluJo SINE Alu 112 303 -9 11503 223 38 30 chr11 6120081 6121790 -142661682 - L1PA16 LINE L1 0 6223 4528 333 82 0 0 chr11 6121790 6121839 -142661633 + (TG)n Simple_repeat Simple_repeat 2 50 0 11503 223 38 30 chr11 6121839 6123806 -142659666 - L1PA16 LINE L1 -1695 4528 2577 2393 89 0 13 chr11 6123806 6124119 -142659353 - AluSg1 SINE Alu 0 309 1 11503 223 38 30 chr11 6124119 6124228 -142659244 - L1PA16 LINE L1 -3646 2577 2470 909 183 0 0 chr11 6124228 6124397 -142659075 + ALR/Alpha Satellite centromeric 3 171 0 11503 223 38 30 chr11 6124397 6124952 -142658520 - L1PA16 LINE L1 -3753 2470 1921 387 0 0 0 chr11 6124952 6124995 -142658477 + (TA)n Simple_repeat Simple_repeat 1 43 0 2552 42 3 16 chr11 6124995 6125306 -142658166 - AluY SINE Alu -4 307 1 11503 223 38 30 chr11 6125306 6126612 -142656860 - L1PA16 LINE L1 -4301 1922 363 419 299 58 48 chr11 6126732 6127043 -142656429 - L1PA16 LINE L1 -5838 366 53 658 424 44 18 chr11 6127252 6127754 -142655718 - L1M2 LINE L1 -6320 529 15 603 214 13 7 chr11 6127773 6127927 -142655545 - ERVL LTR ERVL -1739 4025 3871 614 178 0 0 chr11 6127944 6128062 -142655410 + L1ME1 LINE L1 5813 5930 -236 886 283 84 27 chr11 6128215 6128956 -142654516 - L1PBb LINE L1 -4965 1883 1008 429 296 58 48 chr11 6129076 6129387 -142654085 - L1PBb LINE L1 -5838 1011 698 658 424 44 18 chr11 6129596 6130098 -142653374 - L1PBb LINE L1 -6320 529 15 603 214 13 7 chr11 6130117 6130271 -142653201 - ERVL LTR ERVL -1739 4025 3871 1006 226 4 4 chr11 6130288 6130527 -142652945 + L1ME1 LINE L1 5813 6051 -115 1985 105 25 11 chr11 6130533 6130818 -142652654 + AluSg SINE Alu 1 289 -21 462 226 8 15 chr11 6131265 6131398 -142652074 - L1MA7 LINE L1 -4 6287 6156 289 188 29 51 chr11 6131434 6131572 -142651900 - Charlie5 DNA MER1_type -126 2486 2352 2178 149 32 5 chr11 6131570 6131946 -142651526 - L1PA16 LINE L1 0 6166 5781 473 103 16 159 chr11 6131952 6132078 -142651394 - MER50 LTR ERV1 -130 604 497 1659 194 51 15 chr11 6134149 6134561 -142648911 - Charlie4a DNA MER1_type -33 475 49 1321 198 15 10 chr11 6135495 6135847 -142647625 + L1MB8 LINE L1 5118 5470 -714 2320 188 42 21 chr11 6135851 6136035 -142647437 + L1MB8 LINE L1 5610 5789 -389 1797 180 0 0 chr11 6136035 6136350 -142647122 + AluSx SINE Alu 1 315 0 2320 188 42 21 chr11 6136350 6136692 -142646780 + L1MB8 LINE L1 5789 6148 -30 415 263 22 118 chr11 6137042 6137270 -142646202 - L1ME LINE L1 -339 5782 5577 274 219 27 41 chr11 6137604 6137677 -142645795 - L2 LINE L2 -8 3305 3234 221 356 0 0 chr11 6137721 6137794 -142645678 + L2 LINE L2 3237 3309 -4 204 209 0 0 chr11 6138369 6138412 -142645060 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 367 75 17 chr11 6138497 6138617 -142644855 + L2 LINE L2 3137 3263 -9 419 251 94 6 chr11 6140672 6140843 -142642629 - L1MC4 LINE L1 0 8042 7857 * 1071 263 67 25 chr11 6140841 6141420 -142642052 + L1ME3A LINE L1 5261 5889 -281 277 273 82 49 chr11 6141404 6141854 -142641618 + L1ME3 LINE L1 4754 5232 -914 * 282 334 77 15 chr11 6141882 6142206 -142641266 + L1ME3 LINE L1 5254 5591 -574 399 295 71 22 chr11 6142360 6142543 -142640929 + L1ME3 LINE L1 5752 5943 -219 563 296 70 50 chr11 6143322 6143739 -142639733 + L1ME LINE L1 5310 5738 -383 1978 158 103 8 chr11 6143739 6144126 -142639346 - MSTB LTR MaLR -2 424 1 563 296 70 50 chr11 6144126 6144150 -142639322 + L1ME LINE L1 5738 5760 -361 3237 142 45 6 chr11 6144461 6144968 -142638504 - MER1A DNA MER1_type 0 527 1 42240 39 3 0 chr11 6145213 6150356 -142633116 + L1P LINE L1 1 5161 -985 4646 11 0 0 chr11 6150495 6151019 -142632453 + L1PA3 LINE L1 5628 6151 -4 216 0 0 0 chr11 6151054 6151078 -142632394 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 918 214 31 5 chr11 6151078 6151274 -142632198 + THE1C LTR MaLR 175 375 0 255 388 53 24 chr11 6151284 6151490 -142631982 + L2 LINE L2 2765 2976 -338 6268 26 3 1 chr11 6154535 6155275 -142628197 - L1PA4 LINE L1 -3 6152 5412 1419 324 53 19 chr11 6155709 6156345 -142627127 + L2 LINE L2 2184 2841 -473 193 250 100 33 chr11 6156384 6156444 -142627028 - MER5B DNA MER1_type 0 178 115 237 225 75 0 chr11 6156508 6156588 -142626884 + L1ME LINE L1 197 282 -5923 268 271 88 0 chr11 6157476 6157646 -142625826 + L1M3d LINE L1 1025 1209 -4682 347 231 0 33 chr11 6157859 6157950 -142625522 + L1ME LINE L1 1532 1619 -4777 * 652 246 11 29 chr11 6157928 6158103 -142625369 + L1MEc LINE L1 36 207 -6189 3204 269 61 32 chr11 6158107 6159458 -142624014 + L1MEc LINE L1 353 1751 -4645 2111 121 0 10 chr11 6159458 6159756 -142623716 + AluSx SINE Alu 1 295 -17 3204 269 61 32 chr11 6159756 6159858 -142623614 + L1MEc LINE L1 1751 1849 -4547 248 226 0 0 chr11 6159870 6159974 -142623498 + L1MEc LINE L1 2463 2627 -3588 351 0 0 0 chr11 6159982 6160021 -142623451 + (CA)n Simple_repeat Simple_repeat 2 40 0 6703 59 9 22 chr11 6160023 6160968 -142622504 - L1PA7 LINE L1 -21 6133 5201 5420 101 33 12 chr11 6160968 6161778 -142621694 + L1PA15 LINE L1 5337 6163 -2 521 303 76 32 chr11 6162179 6162364 -142621108 + LTR33 LTR ERVL 18 210 -311 321 237 51 85 chr11 6162420 6162538 -142620934 + LTR33 LTR ERVL 304 417 -104 192 77 0 0 chr11 6162894 6162920 -142620552 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 254 28 14 chr11 6162929 6163000 -142620472 - L1ME LINE L1 -204 5986 5915 489 283 81 12 chr11 6163132 6163305 -142620167 - MIR SINE MIR -73 189 5 530 286 83 43 chr11 6163305 6163822 -142619650 - L1ME LINE L1 -312 5878 5341 384 320 73 77 chr11 6164020 6164595 -142618877 - L1ME LINE L1 -1016 5199 4627 338 287 81 46 chr11 6164595 6164769 -142618703 + MER5A DNA MER1_type 7 186 -3 664 302 116 67 chr11 6164778 6164931 -142618541 - L1ME LINE L1 -1586 4629 4485 1907 140 32 0 chr11 6164931 6165210 -142618262 - AluSg SINE Alu -22 288 1 664 302 116 67 chr11 6165210 6165800 -142617672 - L1ME LINE L1 -1730 4485 3850 2022 234 123 31 chr11 6165989 6166730 -142616742 - L1MEc LINE L1 -3193 3022 2227 2347 86 0 19 chr11 6166730 6167045 -142616427 - AluY SINE Alu -2 309 1 2022 234 123 31 chr11 6167045 6167269 -142616203 - L1MEc LINE L1 -3988 2227 2025 659 300 106 29 chr11 6167407 6167784 -142615688 - L1MEc LINE L1 -5936 460 55 323 214 0 67 chr11 6167912 6168001 -142615471 - L1ME4a LINE L1 -71 6050 5968 874 171 0 0 chr11 6168197 6168343 -142615129 + FRAM SINE Alu 30 175 -1 271 205 39 26 chr11 6168675 6168753 -142614719 - L1ME4a LINE L1 -495 5626 5548 512 290 54 27 chr11 6168821 6169007 -142614465 + MIR SINE MIR 72 262 0 311 222 20 46 chr11 6169046 6169230 -142614242 - L1ME4a LINE L1 -897 5405 5256 737 173 167 0 chr11 6169231 6169393 -142614079 - L1P LINE L1 -1947 4199 4011 4258 149 15 8 chr11 6169394 6170118 -142613354 + L1PA16 LINE L1 5438 6166 0 28 29 0 0 chr11 6170740 6170775 -142612697 + AT_rich Low_complexity Low_complexity 1 35 0 457 393 85 22 chr11 6172426 6172874 -142610598 - L3 LINE CR1 -5 1572 1097 693 237 78 41 chr11 6173689 6173908 -142609564 + L2 LINE L2 600 826 -2488 374 246 53 18 chr11 6173908 6174022 -142609450 + MLT1G LTR MaLR 473 590 0 330 75 94 19 chr11 6174193 6174246 -142609226 - LTR67 LTR ERVL -1 556 500 245 279 99 70 chr11 6174279 6174451 -142609021 - LTR67 LTR ERVL -134 423 247 1856 178 43 0 chr11 6174470 6174818 -142608654 + L1MC3 LINE L1 7227 7589 -196 1197 139 21 72 chr11 6174844 6175081 -142608391 + AluJb SINE Alu 84 308 -4 417 30 45 15 chr11 6175094 6175161 -142608311 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 576 178 36 115 chr11 6175162 6175415 -142608057 + L1MC3 LINE L1 7553 7785 0 490 306 60 50 chr11 6175591 6175989 -142607483 + L2 LINE L2 1957 2358 -956 5194 168 93 59 chr11 6179122 6179695 -142603777 - L1MC3 LINE L1 -35 7750 7198 250 163 0 0 chr11 6179695 6179738 -142603734 - MLT1F1 LTR MaLR -478 89 47 5194 168 93 59 chr11 6179738 6180397 -142603075 - L1MC3 LINE L1 -587 7198 6432 387 292 158 15 chr11 6180560 6180762 -142602710 - MIR SINE MIR -13 249 19 850 234 73 5 chr11 6180780 6180985 -142602487 - MER20 DNA MER1_type 0 219 1 225 313 49 86 chr11 6182610 6182773 -142600699 - L2 LINE L2 -473 2841 2685 917 192 106 0 chr11 6182785 6182983 -142600489 + MER58A DNA MER1_type 1 219 -5 2478 42 0 26 chr11 6183375 6183683 -142599789 + AluY SINE Alu 1 300 -11 408 206 49 0 chr11 6183686 6183788 -142599684 + L1MC5 LINE L1 7335 7441 -520 1026 247 113 43 chr11 6184249 6184719 -142598753 - MLT1D LTR MaLR 0 505 3 1433 231 130 47 chr11 6184846 6185421 -142598051 + L1MB5 LINE L1 347 969 -5573 5067 202 105 23 chr11 6185424 6188779 -142594693 + L1MB5 LINE L1 2965 6660 -12 250 356 89 53 chr11 6188792 6189185 -142594287 - L2 LINE L2 -2288 1026 620 183 217 87 0 chr11 6189255 6189301 -142594171 + L2 LINE L2 3223 3272 0 1589 166 10 41 chr11 6189823 6190118 -142593354 + AluJo SINE Alu 14 299 -13 1568 194 3 16 chr11 6190174 6190478 -142592994 - AluJo SINE Alu -12 300 1 295 333 97 14 chr11 6191211 6191355 -142592117 + MER5B DNA MER1_type 1 156 -22 180 341 61 8 chr11 6191829 6191961 -142591511 - L2 LINE L2 -1208 2106 1968 460 278 159 30 chr11 6192222 6192492 -142590980 - L2 LINE L2 -4 3309 3005 2876 129 27 43 chr11 6193963 6194476 -142588996 - LTR10B LTR ERV1 0 505 1 482 184 62 9 chr11 6194496 6194630 -142588842 + MER21B LTR ERV1 614 808 -123 287 257 27 0 chr11 6194703 6194777 -142588695 - MER77 LTR ERV1 -4 601 526 3068 165 96 33 chr11 6194781 6195090 -142588382 - LTR62 LTR ERVK -2 717 429 2385 121 32 69 chr11 6195090 6195594 -142587878 - LTR19A LTR ERV1 -1 485 1 3068 165 96 33 chr11 6195594 6195958 -142587514 - LTR62 LTR ERVK -290 429 1 1419 244 14 92 chr11 6195973 6196464 -142587008 - MER21B LTR ERV1 -396 467 15 2487 182 24 21 chr11 6196735 6197268 -142586204 - MER21B-int LTR ERV1 -61 4130 3596 4697 56 8 0 chr11 6197368 6197989 -142585483 - L1P LINE L1 -5514 632 7 21 0 0 0 chr11 6197996 6198017 -142585455 + AT_rich Low_complexity Low_complexity 1 21 0 2843 169 74 11 chr11 6200284 6200852 -142582620 + MER6A DNA MER2_type 2 605 0 1972 162 66 33 chr11 6201677 6202204 -142581268 - MLT2A2 LTR ERVL 0 554 1 195 219 55 55 chr11 6202429 6202502 -142580970 - L2 LINE L2 -469 2845 2773 205 167 0 30 chr11 6203050 6203116 -142580356 + (TA)n Simple_repeat Simple_repeat 2 65 0 287 237 37 52 chr11 6203252 6203387 -142580085 + L1ME LINE L1 5473 5605 -516 250 207 61 24 chr11 6204529 6204611 -142578861 - ERVL LTR ERVL -5062 702 618 493 273 105 40 chr11 6205116 6205542 -142577930 - LTR33 LTR ERVL -8 513 3 640 200 91 11 chr11 6205752 6205927 -142577545 + MER5A DNA MER1_type 1 189 0 7555 184 33 17 chr11 6206811 6209489 -142573983 + L1PA16 LINE L1 3456 6166 0 2254 92 20 0 chr11 6210826 6211120 -142572352 + AluSg SINE Alu 5 304 -6 331 92 154 0 chr11 6211124 6211189 -142572283 - MADE1 DNA Mariner 0 80 6 301 169 0 0 chr11 6211232 6211291 -142572181 + MER92B LTR ERV1 431 489 -147 1016 287 72 18 chr11 6211299 6211689 -142571783 + ERVL LTR ERVL 3282 3692 -2072 1335 134 45 0 chr11 6211705 6211928 -142571544 + LTR45B LTR ERV1 3 235 -254 384 244 134 46 chr11 6212316 6212704 -142570768 + MLT1E LTR MaLR 26 495 -54 2846 187 33 2 chr11 6213205 6213745 -142569727 + MER41D LTR ERV1 1 557 0 563 238 86 30 chr11 6213788 6214091 -142569381 - HAL1 LINE L1 -135 2372 2053 1063 191 10 5 chr11 6214131 6214330 -142569142 - MER82 DNA MER2_type 0 653 454 614 167 89 89 chr11 6214600 6214743 -142568729 + MIR SINE MIR 71 216 -46 2180 49 8 4 chr11 6214743 6215009 -142568463 + AluY SINE Alu 1 267 -44 614 167 89 89 chr11 6215009 6215045 -142568427 + MIR SINE MIR 215 250 -12 519 161 0 11 chr11 6215173 6215260 -142568212 - FLAM_A SINE Alu -15 127 42 349 216 123 56 chr11 6215565 6215727 -142567745 - L1ME4a LINE L1 -224 5897 5725 417 267 50 6 chr11 6215731 6215911 -142567561 - L1ME4a LINE L1 -450 5671 5484 1140 335 149 22 chr11 6216018 6217160 -142566312 + L2 LINE L2 1608 2894 -420 238 250 14 56 chr11 6217172 6217244 -142566228 - L2 LINE L2 -11 3302 3234 316 354 95 55 chr11 6217263 6217588 -142565884 + L2 LINE L2 2885 3222 -50 1217 197 94 0 chr11 6218072 6218316 -142565156 + AluJo SINE Alu 46 312 0 902 274 138 9 chr11 6218434 6218891 -142564581 - MLT1G1 LTR MaLR -7 588 73 292 276 39 31 chr11 6218919 6219046 -142564426 - MLT1G1-int LTR MaLR -1 1370 1243 214 206 111 0 chr11 6219291 6219354 -142564118 - L2 LINE L2 -944 2370 2301 22 0 0 0 chr11 6219480 6219502 -142563970 + AT_rich Low_complexity Low_complexity 1 22 0 35583 38 8 0 chr11 6219502 6224849 -142558623 - L1PA3 LINE L1 -3 6152 782 2011 90 77 64 chr11 6224949 6225360 -142558112 + LTR14B LTR ERVK 1 608 0 270 282 24 24 chr11 6225403 6225573 -142557899 + L1ME3A LINE L1 3776 3945 -2201 534 266 108 22 chr11 6225836 6226159 -142557313 + L1ME3A LINE L1 5618 5968 -202 1008 126 0 0 chr11 6226294 6226437 -142557035 + FLAM_C SINE Alu 1 143 0 478 159 34 0 chr11 6226444 6226532 -142556940 + AluSg/x SINE Alu 201 291 -18 689 76 0 0 chr11 6226699 6226791 -142556681 - AluY SINE Alu -10 301 210 2025 122 3 11 chr11 6226905 6227220 -142556252 + AluSx SINE Alu 1 313 0 390 304 87 38 chr11 6227391 6227657 -142555815 + L1M4 LINE L1 4681 4959 -1187 509 322 90 25 chr11 6227727 6227972 -142555500 - MIR SINE MIR 0 262 2 301 272 159 88 chr11 6228156 6228620 -142554852 + L1ME4a LINE L1 4736 5232 -914 305 306 45 37 chr11 6228675 6228809 -142554663 + L1ME4a LINE L1 5297 5431 -690 1671 127 0 12 chr11 6229099 6229358 -142554114 + AluSx SINE Alu 40 295 -17 341 224 121 0 chr11 6229364 6229480 -142553992 + L1ME4a LINE L1 5767 5896 -225 264 314 0 0 chr11 6229658 6229728 -142553744 - L2 LINE L2 0 3313 3244 227 329 0 0 chr11 6229784 6229869 -142553603 + (TA)n Simple_repeat Simple_repeat 2 86 0 2372 98 0 0 chr11 6230272 6230577 -142552895 - AluSx SINE Alu -6 306 2 5091 94 10 1 chr11 6231406 6232204 -142551268 - L1P LINE L1 -860 5286 4482 1897 168 0 0 chr11 6232333 6232624 -142550848 + AluJb SINE Alu 3 293 -19 1970 129 3 3 chr11 6233533 6233828 -142549644 - AluSx SINE Alu -17 295 1 1271 254 97 28 chr11 6233842 6234453 -142549019 + L1MC5 LINE L1 7261 7913 -48 590 295 58 45 chr11 6234536 6234933 -142548539 + MLT1J1 LTR MaLR 43 444 -2 291 242 30 0 chr11 6234942 6235008 -142548464 + L2 LINE L2 3188 3255 -17 311 266 125 23 chr11 6235164 6235292 -142548180 + L2 LINE L2 3170 3310 -3 22 35 0 0 chr11 6235880 6235909 -142547563 + AT_rich Low_complexity Low_complexity 1 29 0 835 226 78 46 chr11 6235912 6236129 -142547343 - MER58A DNA MER1_type 0 224 1 12922 38 4 1 chr11 6236650 6239001 -142544471 - L1PA5 LINE L1 0 6154 3791 6441 99 56 0 chr11 6239001 6239972 -142543500 - L1MA1 LINE L1 -7 6295 5271 826 214 124 19 chr11 6240555 6240809 -142542663 - MLT1D LTR MaLR -2 503 199 457 133 27 0 chr11 6240813 6240888 -142542584 + MLT1B LTR MaLR 1 77 -313 1318 164 96 40 chr11 6240888 6241138 -142542334 + Tigger7 DNA MER2_type 1 264 -469 590 167 0 10 chr11 6241143 6241239 -142542233 + Tigger7 DNA MER2_type 2392 2486 -1 * 1399 183 46 3 chr11 6241239 6241520 -142541952 + MLT1B LTR MaLR 75 367 -23 823 201 22 22 chr11 6241518 6241697 -142541775 - MSTD LTR MaLR -217 179 1 * 1077 192 43 33 chr11 6241901 6242177 -142541295 + L1ME2 LINE L1 5738 6016 -148 719 214 0 0 chr11 6242382 6242513 -142540959 + FLAM_C SINE Alu 1 131 -2 249 265 15 0 chr11 6242881 6242949 -142540523 + LTR50 LTR ERVL 1 69 -726 235 309 27 36 chr11 6242979 6243089 -142540383 + L1MC4 LINE L1 6912 7020 -1022 27 29 0 0 chr11 6243446 6243480 -142539992 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr11 6243547 6243568 -142539904 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 6243642 6243677 -142539795 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr11 6244000 6244038 -142539434 + AT_rich Low_complexity Low_complexity 1 38 0 7675 22 2 0 chr11 6244359 6245967 -142537505 - L1PA3 LINE L1 -5 6150 4541 7122 21 0 0 chr11 6245967 6246825 -142536647 + L1P LINE L1 2453 3310 -2836 200 299 71 24 chr11 6246954 6247081 -142536391 + MIR SINE MIR 89 221 -41 295 279 36 73 chr11 6247158 6247323 -142536149 - MIR3 SINE MIR -40 168 10 181 216 0 0 chr11 6247713 6247750 -142535722 - MIR SINE MIR -223 39 3 195 292 92 77 chr11 6247764 6247894 -142535578 + L2 LINE L2 2941 3072 -200 1066 271 175 7 chr11 6248198 6248616 -142534856 + L2 LINE L2 2528 3012 -301 416 298 88 6 chr11 6248715 6248886 -142534586 - L1ME LINE L1 -460 5661 5477 650 152 95 25 chr11 6250344 6250502 -142532970 + MER53 DNA DNA 3 171 -18 230 224 0 35 chr11 6250615 6250673 -142532799 - HAL1b LINE L1 -628 720 665 239 254 82 30 chr11 6250793 6250927 -142532545 - HAL1 LINE L1 -944 1563 1423 243 245 98 37 chr11 6250974 6251137 -142532335 - HAL1 LINE L1 -1183 1324 1152 230 175 0 18 chr11 6254362 6254419 -142529053 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 299 207 49 0 chr11 6254979 6255061 -142528411 + MLT1H LTR MaLR 464 549 0 267 256 64 48 chr11 6255726 6255851 -142527621 - MIR SINE MIR -48 214 88 277 345 101 0 chr11 6256125 6256264 -142527208 - MIR SINE MIR -62 200 48 39 80 0 0 chr11 6256529 6256617 -142526855 + AT_rich Low_complexity Low_complexity 1 88 0 22 56 0 0 chr11 6256751 6256787 -142526685 + AT_rich Low_complexity Low_complexity 1 36 0 326 283 44 28 chr11 6257007 6257082 -142526390 - L1MC4a LINE L1 -1913 5895 5823 2381 194 83 21 chr11 6257082 6257614 -142525858 + MLT1F1 LTR MaLR 1 565 -2 326 283 44 28 chr11 6257614 6257718 -142525754 - L1MC4a LINE L1 -1985 5823 5713 837 226 18 128 chr11 6258385 6258930 -142524542 - L1MC5 LINE L1 -738 7223 6739 45 0 0 0 chr11 6259963 6260008 -142523464 + AT_rich Low_complexity Low_complexity 1 45 0 975 294 97 53 chr11 6260024 6260800 -142522672 + L1MC/D LINE L1 2199 2939 -3207 1735 174 0 3 chr11 6260800 6261102 -142522370 + AluJb SINE Alu 1 301 0 6688 174 21 6 chr11 6261108 6263231 -142520241 + L1PA15 LINE L1 4015 6159 -6 975 294 97 53 chr11 6263231 6264463 -142519009 + L1MC/D LINE L1 2943 4304 -1842 356 276 39 64 chr11 6264792 6265075 -142518397 + L1P LINE L1 4759 5034 -1112 1209 272 96 38 chr11 6265468 6265967 -142517505 - MLT1F LTR MaLR -10 532 52 2560 42 0 0 chr11 6266067 6266378 -142517094 + L1P LINE L1 3474 3784 -2362 267 363 46 43 chr11 6266608 6266937 -142516535 + L1MC/D LINE L1 5254 5586 -2222 2104 112 7 3 chr11 6266937 6267232 -142516240 - AluSq SINE Alu -17 296 1 267 363 46 43 chr11 6267232 6267293 -142516179 + L1MC/D LINE L1 5586 5645 -2163 3943 66 10 2 chr11 6267422 6267937 -142515535 + L1PA7 LINE L1 5633 6151 -3 1150 245 75 39 chr11 6268050 6268245 -142515227 + L1MC4 LINE L1 3211 3398 -2748 1984 136 88 14 chr11 6268245 6268598 -142514874 - L1PA15 LINE L1 0 6165 5787 1150 245 75 39 chr11 6268598 6268884 -142514588 + L1MC4 LINE L1 3398 3709 -2437 752 245 97 7 chr11 6269078 6269368 -142514104 + L1MC4 LINE L1 4268 4583 -1563 1383 213 80 24 chr11 6270042 6270502 -142512970 + L1MC4 LINE L1 4572 5057 -1089 1550 209 98 106 chr11 6270506 6270851 -142512621 + L1MC4 LINE L1 5090 4705 -1441 379 271 122 27 chr11 6270851 6271039 -142512433 + MER63A DNA MER1_type 2 207 -3 1550 209 98 106 chr11 6271039 6271728 -142511744 + L1MC4 LINE L1 4704 5397 -749 268 255 50 93 chr11 6272176 6272295 -142511177 + MIR SINE MIR 33 147 -61 478 288 126 28 chr11 6273700 6273915 -142509557 + MIR SINE MIR 7 242 -20 335 269 127 30 chr11 6274548 6274682 -142508790 - L1PA15-16 LINE L1 -5559 1290 1144 228 260 95 47 chr11 6275122 6275291 -142508181 + L1MCc LINE L1 1183 1359 -5064 27 62 0 0 chr11 6275388 6275436 -142508036 + AT_rich Low_complexity Low_complexity 1 48 0 72 96 0 0 chr11 6275533 6275752 -142507720 + AT_rich Low_complexity Low_complexity 1 219 0 208 187 41 0 chr11 6275752 6275875 -142507597 + (TA)n Simple_repeat Simple_repeat 1 128 0 1936 169 82 17 chr11 6275929 6276331 -142507141 - MSTA LTR MaLR 0 428 1 259 246 88 18 chr11 6276355 6276469 -142507003 + L1MCc LINE L1 1952 2073 -5049 523 322 93 58 chr11 6277168 6277565 -142505907 + HAL1 LINE L1 1124 1534 -973 328 313 36 7 chr11 6277752 6277955 -142505517 + L1MCc LINE L1 2831 3037 -3904 4665 33 0 0 chr11 6278388 6279279 -142504193 + L1PA3 LINE L1 5070 6155 0 413 164 277 66 chr11 6279280 6279536 -142503936 + L2 LINE L2 1405 1714 -1600 1196 198 50 4 chr11 6279544 6279782 -142503690 - MLT1A1 LTR MaLR 0 365 117 3028 248 85 58 chr11 6279882 6281042 -142502430 + L2 LINE L2 1723 2914 -400 992 281 82 54 chr11 6282632 6283020 -142500452 + L2 LINE L2 2894 3292 -21 344 250 93 47 chr11 6285107 6285279 -142498193 - L1ME3 LINE L1 -2 6160 5981 603 288 68 10 chr11 6285311 6285603 -142497869 - L1ME3 LINE L1 -268 5902 5594 403 219 172 0 chr11 6285638 6285789 -142497683 - L1MD3 LINE L1 -61 7934 7758 2719 188 102 24 chr11 6286030 6286779 -142496693 - L1MC3 LINE L1 -273 7512 6706 1799 130 7 40 chr11 6287290 6287427 -142496045 + AluSx SINE Alu 1 141 -171 279 0 0 0 chr11 6287427 6287458 -142496014 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1799 130 7 40 chr11 6287458 6287620 -142495852 + AluSx SINE Alu 141 290 -22 842 214 24 29 chr11 6287662 6287872 -142495600 + MER20 DNA MER1_type 7 215 -4 254 250 158 0 chr11 6288236 6288356 -142495116 + MIR SINE MIR 69 207 -55 290 268 134 0 chr11 6288860 6288942 -142494530 - MIR SINE MIR -58 204 112 * 406 333 159 17 chr11 6288940 6289349 -142494123 - L2 LINE L2 -1381 1933 1467 228 350 50 0 chr11 6289752 6289832 -142493640 + MIR SINE MIR 20 103 -159 194 333 133 54 chr11 6289843 6290341 -142493131 - L2 LINE L2 -2238 1076 540 307 322 82 12 chr11 6290451 6290622 -142492850 - MIR SINE MIR -21 241 59 195 42 0 0 chr11 6291645 6291669 -142491803 + (TA)n Simple_repeat Simple_repeat 1 24 0 1633 144 35 75 chr11 6292499 6292846 -142490626 + MER1B DNA MER1_type 1 333 -6 274 229 0 0 chr11 6293382 6293443 -142490029 - L1M4 LINE L1 -1363 4783 4723 239 235 0 0 chr11 6293627 6293678 -142489794 - L1ME4a LINE L1 -87 6034 5984 196 307 67 0 chr11 6293856 6293931 -142489541 - L2 LINE L2 0 3272 3193 31 0 0 0 chr11 6294505 6294536 -142488936 + AT_rich Low_complexity Low_complexity 1 31 0 455 269 66 48 chr11 6296363 6296590 -142486882 - LTR16A LTR ERVL -189 261 31 459 312 88 6 chr11 6297166 6297336 -142486136 - MIR SINE MIR 0 262 79 250 265 103 0 chr11 6297777 6297845 -142485627 + L2 LINE L2 3149 3223 -49 187 79 53 0 chr11 6298023 6298061 -142485411 + (TA)n Simple_repeat Simple_repeat 1 40 0 534 319 58 9 chr11 6298079 6298305 -142485167 - MIR SINE MIR -20 242 6 314 313 10 30 chr11 6298451 6298550 -142484922 - MIR SINE MIR -115 147 51 227 380 78 7 chr11 6298580 6298722 -142484750 - L3 LINE CR1 -234 1343 1192 2295 82 0 23 chr11 6301336 6301641 -142481831 - AluSc SINE Alu -11 298 1 2089 123 7 10 chr11 6302071 6302372 -142481100 + AluSx SINE Alu 1 300 -12 36 53 0 0 chr11 6303098 6303155 -142480317 + AT_rich Low_complexity Low_complexity 1 57 0 6299 127 20 14 chr11 6303314 6304791 -142478681 - L1MA3 LINE L1 0 6305 4823 525 43 0 0 chr11 6306350 6306419 -142477053 + L1M1 LINE L1 5723 5791 -513 322 338 94 57 chr11 6308243 6308471 -142475001 - MIR SINE MIR -2 260 23 275 318 141 5 chr11 6308526 6308724 -142474748 - L1ME LINE L1 -453 5668 5444 33 73 0 0 chr11 6308822 6308890 -142474582 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr11 6312462 6312483 -142470989 + AT_rich Low_complexity Low_complexity 1 21 0 1468 181 148 48 chr11 6312834 6313253 -142470219 - LTR40c LTR ERVL 0 465 5 3605 236 67 40 chr11 6313257 6314346 -142469126 - HERVL40 LTR ERVL 0 5530 4413 412 297 115 50 chr11 6314531 6315312 -142468160 - L1ME LINE L1 -1274 4872 4041 7371 130 43 5 chr11 6315366 6317195 -142466277 - L1PA6 LINE L1 0 6154 4255 943 276 140 23 chr11 6317199 6318198 -142465274 - L1ME LINE L1 -2280 3866 2751 1250 206 39 31 chr11 6318267 6318553 -142464919 - AluJo SINE Alu -22 290 3 308 300 93 0 chr11 6318633 6318773 -142464699 - L1ME LINE L1 -3576 2570 2418 2247 129 0 0 chr11 6319217 6319528 -142463944 - AluSx SINE Alu -1 311 1 778 265 57 33 chr11 6320219 6320464 -142463008 + MIR SINE MIR 1 251 -11 207 167 0 0 chr11 6321244 6321280 -142462192 + (CATA)n Simple_repeat Simple_repeat 2 37 0 483 361 17 11 chr11 6321611 6321791 -142461681 + MER5A DNA MER1_type 8 188 -1 1117 221 32 4 chr11 6321970 6322223 -142461249 - MLT1H1 LTR MaLR 0 555 296 1546 252 143 26 chr11 6322238 6322852 -142460620 - MER50 LTR ERV1 -23 711 26 344 278 87 17 chr11 6322852 6322967 -142460505 - MER50 LTR ERV1 -611 123 1 403 303 98 15 chr11 6322998 6323200 -142460272 - MLT1H1 LTR MaLR -348 219 1 3099 207 59 23 chr11 6323307 6324050 -142459422 - MER21B LTR ERV1 -62 801 32 2965 146 49 12 chr11 6324574 6325144 -142458328 - LTR59 LTR ERV1 -6 591 1 344 303 112 6 chr11 6325163 6325391 -142458081 + L1M4 LINE L1 3691 3949 -2197 568 209 115 0 chr11 6326015 6326163 -142457309 + MER96B DNA MER1_type? 253 417 0 363 285 124 0 chr11 6326230 6326416 -142457056 - L1M4 LINE L1 -2938 3208 3000 562 289 93 50 chr11 6326416 6326780 -142456692 + L2 LINE L2 2934 3313 0 2153 131 73 14 chr11 6327445 6327789 -142455683 - THE1B LTR MaLR 0 364 1 1171 102 71 31 chr11 6327801 6328026 -142455446 + L1MB2 LINE L1 5938 6171 0 196 148 33 33 chr11 6328026 6328061 -142455411 + (TTAAA)n Simple_repeat Simple_repeat 2 39 -23 2497 84 0 0 chr11 6328061 6328372 -142455100 + AluY SINE Alu 1 311 0 196 148 33 33 chr11 6328372 6328397 -142455075 + (TTAAA)n Simple_repeat Simple_repeat 38 62 0 1402 94 11 0 chr11 6328412 6328593 -142454879 + AluSq SINE Alu 1 183 -130 1707 161 42 7 chr11 6328699 6328985 -142454487 - AluJo SINE Alu -16 296 1 659 204 28 99 chr11 6329016 6329134 -142454338 - L1ME2 LINE L1 -169 5995 5870 2350 98 10 0 chr11 6329134 6329439 -142454033 - AluSx SINE Alu -4 308 1 659 204 28 99 chr11 6329439 6329604 -142453868 - L1ME2 LINE L1 -294 5870 5732 314 240 104 48 chr11 6381225 6381350 -142402122 + HAL1 LINE L1 1 132 -2375 1455 150 29 60 chr11 6381831 6381913 -142401559 - MLT1F1 LTR MaLR 0 595 512 2397 93 3 0 chr11 6381913 6382223 -142401249 - AluSp SINE Alu -2 311 1 1455 150 29 60 chr11 6382223 6382423 -142401049 - MLT1F1 LTR MaLR -83 512 294 416 270 18 49 chr11 6382687 6382850 -142400622 - Charlie8 DNA MER1_type -2201 216 59 332 339 48 16 chr11 6382894 6383018 -142400454 + HAL1 LINE L1 754 881 -1626 80 63 0 0 chr11 6383496 6383639 -142399833 + AT_rich Low_complexity Low_complexity 1 143 0 328 164 60 0 chr11 6384169 6384236 -142399236 + MIR SINE MIR 24 94 -168 229 355 21 0 chr11 6385304 6385493 -142397979 - L1M4 LINE L1 -3549 2597 2405 312 286 9 0 chr11 6385504 6385616 -142397856 + L1ME3A LINE L1 5802 5914 -250 309 266 29 86 chr11 6385694 6385833 -142397639 + L1ME3A LINE L1 5963 6093 -77 538 275 68 68 chr11 6386225 6386476 -142396996 - MIR SINE MIR 0 262 12 189 0 0 0 chr11 6386884 6386905 -142396567 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 214 203 0 109 chr11 6387091 6387155 -142396317 + L2 LINE L2 3255 3311 -2 575 190 78 0 chr11 6387366 6387482 -142395990 + MLT2B1 LTR ERVL 2 126 -394 915 258 154 20 chr11 6387761 6388059 -142395413 + MLT2B1 LTR ERVL 129 466 -54 238 50 50 0 chr11 6388148 6388188 -142395284 + (TA)n Simple_repeat Simple_repeat 2 43 0 315 0 0 0 chr11 6388191 6388226 -142395246 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 163 8 127 chr11 6388237 6388630 -142394842 + MER7A DNA MER2_type 1 344 -2 386 61 0 0 chr11 6388640 6388689 -142394783 + MLT2B1 LTR ERVL 472 520 0 242 319 52 43 chr11 6389429 6389545 -142393927 - L2 LINE L2 -6 3266 3150 1116 286 79 44 chr11 6389863 6390021 -142393451 - L2 LINE L2 0 3313 3162 353 32 63 0 chr11 6390021 6390084 -142393388 + (TA)n Simple_repeat Simple_repeat 2 68 0 1116 286 79 44 chr11 6390084 6390665 -142392807 - L2 LINE L2 -151 3162 2472 6132 96 4 30 chr11 6392295 6393225 -142390247 - L1P LINE L1 -3504 2642 1737 * 10599 77 11 1 chr11 6393221 6395126 -142388346 + L1P3 LINE L1 3899 5819 -335 423 217 275 7 chr11 6396159 6396297 -142387175 + MER5A DNA MER1_type 9 183 -6 297 0 0 0 chr11 6396383 6396416 -142387056 + (TA)n Simple_repeat Simple_repeat 1 33 0 592 374 65 39 chr11 6396730 6397037 -142386435 + L2 LINE L2 2013 2311 -1003 1499 230 19 17 chr11 6397037 6397398 -142386074 + MLT1A1 LTR MaLR 2 363 -2 592 374 65 39 chr11 6397398 6397817 -142385655 + L2 LINE L2 2311 2758 -556 5073 217 65 41 chr11 6398354 6398493 -142384979 + L1MC4 LINE L1 6490 6624 -1418 201 39 0 0 chr11 6398493 6398519 -142384953 + (CA)n Simple_repeat Simple_repeat 2 27 0 5073 217 65 41 chr11 6398519 6399895 -142383577 + L1MC4 LINE L1 6624 8041 -1 664 296 79 38 chr11 6400029 6400269 -142383203 + MIR SINE MIR 3 252 -10 552 288 64 38 chr11 6400878 6401114 -142382358 + MIR SINE MIR 1 242 -20 28 71 0 0 chr11 6401243 6401299 -142382173 + AT_rich Low_complexity Low_complexity 1 56 0 988 173 9 33 chr11 6401352 6401566 -142381906 - L1MD1 LINE L1 -248 6388 6180 1945 145 3 0 chr11 6401675 6401978 -142381494 - AluSx SINE Alu -8 304 1 8512 210 64 40 chr11 6401979 6405857 -142377615 - L1MD1 LINE L1 -455 6181 2399 414 0 0 0 chr11 6405857 6405903 -142377569 + (TA)n Simple_repeat Simple_repeat 1 46 0 8582 38 0 20 chr11 6405904 6407760 -142375712 - L1PA5 LINE L1 -7 6147 4313 8512 210 64 40 chr11 6407760 6408543 -142374929 - L1MD1 LINE L1 -4236 2400 1391 22 56 0 0 chr11 6409145 6409181 -142374291 + AT_rich Low_complexity Low_complexity 1 36 0 2139 116 3 17 chr11 6409733 6410034 -142373438 + AluSx SINE Alu 1 297 -15 207 318 118 0 chr11 6410192 6410277 -142373195 + L2 LINE L2 2764 2858 -456 450 367 91 39 chr11 6410520 6411085 -142372387 - L2 LINE L2 -213 3059 2469 229 323 16 0 chr11 6411231 6411293 -142372179 + L2 LINE L2 3186 3248 -24 280 206 16 63 chr11 6412007 6412070 -142371402 + MLT1F LTR MaLR 1 60 -482 1762 180 0 3 chr11 6412087 6412370 -142371102 - AluJo SINE Alu -30 282 1 560 294 0 12 chr11 6412373 6412536 -142370936 + MLT1F LTR MaLR 49 209 -333 1130 65 13 0 chr11 6412639 6412792 -142370680 + L1PA7 LINE L1 5929 6083 -71 1001 176 38 0 chr11 6412832 6413042 -142370430 - L1MD3 LINE L1 -1 7994 7777 506 269 59 0 chr11 6413581 6413700 -142369772 - MER5A DNA MER1_type -62 127 2 431 235 18 71 chr11 6413701 6413871 -142369601 - L1MC5 LINE L1 -876 7085 6925 * 771 255 0 59 chr11 6413867 6414106 -142369366 - L1MC4 LINE L1 -866 7002 6718 614 297 76 10 chr11 6414348 6414651 -142368821 - L1ME4a LINE L1 -269 5852 5530 2460 37 0 10 chr11 6415199 6415493 -142367979 - AluY SINE Alu -20 291 1 665 310 162 18 chr11 6415706 6416093 -142367379 + L2 LINE L2 2687 3127 -186 402 298 121 24 chr11 6416228 6416352 -142367120 + L2 LINE L2 3177 3312 -1 443 215 75 0 chr11 6416487 6416594 -142366878 - MIR SINE MIR -50 212 98 527 231 52 29 chr11 6417534 6417707 -142365765 + L2 LINE L2 2173 2349 -965 508 270 166 43 chr11 6417702 6417980 -142365492 - L2 LINE L2 0 3313 3002 * 433 308 160 0 chr11 6418344 6418500 -142364972 - MER5A DNA MER1_type 0 189 9 270 291 100 18 chr11 6418751 6418861 -142364611 - MIR SINE MIR -108 154 36 187 352 110 11 chr11 6419212 6419303 -142364169 + L2 LINE L2 3169 3268 -4 2086 115 3 0 chr11 6419529 6419816 -142363656 - AluSg SINE Alu -22 288 1 318 306 58 16 chr11 6419906 6420027 -142363445 + MIR SINE MIR 76 201 -61 685 265 85 36 chr11 6420873 6421281 -142362191 + MLT1H LTR MaLR 13 549 0 2607 55 0 0 chr11 6421988 6422295 -142361177 + AluY SINE Alu 1 307 -4 180 0 0 0 chr11 6422295 6422315 -142361157 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 274 376 11 0 chr11 6422965 6423058 -142360414 + LTR67 LTR ERVL 97 190 -367 289 164 36 0 chr11 6423329 6423384 -142360088 + LTR33A LTR ERVL 444 500 -23 201 226 32 0 chr11 6423773 6423835 -142359637 + (TA)n Simple_repeat Simple_repeat 2 65 0 7956 169 53 51 chr11 6424431 6426245 -142357227 + L1MC3 LINE L1 5968 7785 0 1458 64 0 16 chr11 6426391 6426602 -142356870 + AluSq SINE Alu 112 313 0 838 217 87 129 chr11 6426602 6427504 -142355968 + L1MC5 LINE L1 7049 7912 -49 348 218 0 0 chr11 6427537 6427624 -142355848 + (TA)n Simple_repeat Simple_repeat 1 87 0 1434 249 78 11 chr11 6427631 6428005 -142355467 - LTR16A LTR ERVL 0 450 52 1812 169 60 69 chr11 6429178 6429648 -142353824 - MER31B LTR ERV1 0 661 1 584 316 65 71 chr11 6429922 6430371 -142353101 + L2 LINE L2 2827 3272 0 21 0 0 31 chr11 6431185 6431196 -142352276 + AT_rich Low_complexity Low_complexity 1 11 -20 2072 58 11 0 chr11 6431196 6431470 -142352002 - L1PA8 LINE L1 -10 6162 5886 21 0 0 31 chr11 6431470 6431490 -142351982 + AT_rich Low_complexity Low_complexity 11 31 0 892 315 86 47 chr11 6431516 6432307 -142351165 - HAL1 LINE L1 -1590 917 96 1514 257 79 82 chr11 6432401 6432717 -142350755 - L1MC4 LINE L1 0 8042 7727 2414 88 0 7 chr11 6432717 6433023 -142350449 + AluSg SINE Alu 3 306 -4 1514 257 79 82 chr11 6433023 6433618 -142349854 - L1MC4 LINE L1 -315 7727 7132 4879 91 13 4 chr11 6433618 6434308 -142349164 - L1PA16 LINE L1 -11 6155 5460 1514 257 79 82 chr11 6434308 6435611 -142347861 - L1MC4 LINE L1 -910 7132 5842 2071 114 17 3 chr11 6435611 6435925 -142347547 + AluSx SINE Alu 1 312 0 1514 257 79 82 chr11 6435925 6436207 -142347265 - L1MC4 LINE L1 -2200 5842 5561 4657 51 20 3 chr11 6436295 6436883 -142346589 + L1PA7 LINE L1 5556 6153 -1 1480 226 86 47 chr11 6438792 6439278 -142344194 + L1M1 LINE L1 12 516 -7049 * 5131 31 0 6 chr11 6439243 6439878 -142343594 - L1PA3 LINE L1 -3279 2867 2237 21276 26 9 0 chr11 6439878 6443181 -142340291 + L1PA3 LINE L1 2841 6152 -3 337 154 0 0 chr11 6443195 6443260 -142340212 + L1PA5 LINE L1 6084 6148 -6 17745 148 34 12 chr11 6443287 6446241 -142337231 + L1M1 LINE L1 502 3521 -4044 2128 85 0 22 chr11 6446253 6446571 -142336901 + L1MA1 LINE L1 5888 6198 -104 22 0 0 0 chr11 6447801 6447823 -142335649 + AT_rich Low_complexity Low_complexity 1 22 0 1350 153 138 89 chr11 6447968 6448142 -142335330 - Charlie1b DNA MER1_type -2238 523 359 4463 136 20 8 chr11 6448142 6448908 -142334564 - L1MA5 LINE L1 -2 6298 5524 1350 153 138 89 chr11 6448908 6449183 -142334289 - Charlie1b DNA MER1_type -2402 359 52 212 336 143 0 chr11 6449269 6449388 -142334084 + MIR SINE MIR 127 262 0 30 34 0 34 chr11 6450029 6450065 -142333407 + AT_rich Low_complexity Low_complexity 1 36 -21 2874 0 0 0 chr11 6450065 6450372 -142333100 - AluY SINE Alu -4 307 1 30 34 0 34 chr11 6450372 6450394 -142333078 + AT_rich Low_complexity Low_complexity 36 57 0 2185 106 61 35 chr11 6450394 6450771 -142332701 - L1PA16 LINE L1 -6 6160 5774 2100 109 12 34 chr11 6450865 6451185 -142332287 + AluSq SINE Alu 1 313 0 278 250 42 65 chr11 6451318 6451486 -142331986 + L1MEc LINE L1 1399 1562 -4834 22 35 0 0 chr11 6452011 6452040 -142331432 + AT_rich Low_complexity Low_complexity 1 29 0 2210 118 6 13 chr11 6452259 6452573 -142330899 + AluSx SINE Alu 1 312 0 1356 191 93 17 chr11 6452587 6452932 -142330540 + L1M4 LINE L1 4101 4471 -1675 * 1518 227 41 49 chr11 6452917 6453449 -142330023 + L1M4 LINE L1 4747 5274 -872 341 343 7 7 chr11 6453563 6453709 -142329763 + L1M4 LINE L1 4557 4702 -1444 21 0 0 0 chr11 6453840 6453861 -142329611 + AT_rich Low_complexity Low_complexity 1 21 0 3989 164 44 16 chr11 6454237 6454684 -142328788 - L1MA9 LINE L1 -59 6253 5771 2065 112 0 26 chr11 6454684 6454987 -142328485 - AluSx SINE Alu -17 295 1 3989 164 44 16 chr11 6454987 6455354 -142328118 - L1MA9 LINE L1 -541 5771 5416 5141 70 14 0 chr11 6455540 6456207 -142327265 + L1PA8 LINE L1 5488 6163 -9 1189 274 34 62 chr11 6456853 6457383 -142326089 + MER69 DNA AcHobo 697 1211 -1315 1092 202 56 50 chr11 6457386 6457567 -142325905 + MER69 DNA AcHobo 2128 2307 -219 1376 163 48 0 chr11 6457567 6457819 -142325653 + L1PA16 LINE L1 5893 6156 -10 1092 202 56 50 chr11 6457819 6458033 -142325439 + MER69 DNA AcHobo 2307 2525 -1 262 339 51 0 chr11 6458877 6458995 -142324477 - L3 LINE CR1 -17 1560 1437 361 272 120 13 chr11 6459099 6459257 -142324215 + L1M4 LINE L1 4922 5096 -1050 453 337 32 40 chr11 6459274 6459526 -142323946 - MIR SINE MIR -6 256 7 261 239 113 7 chr11 6459529 6459671 -142323801 + L1M4 LINE L1 5104 5260 -886 374 378 54 14 chr11 6459775 6459997 -142323475 + L2 LINE L2 2868 3098 -215 549 264 147 78 chr11 6460251 6460687 -142322785 + MLT1J LTR MaLR 9 474 -37 569 297 109 32 chr11 6460884 6461295 -142322177 - L1ME LINE L1 -367 5797 5355 21 36 0 0 chr11 6461312 6461340 -142322132 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 6461491 6461527 -142321945 + AT_rich Low_complexity Low_complexity 1 36 0 487 288 161 35 chr11 6461752 6462175 -142321297 + L1MC4 LINE L1 4226 4701 -1445 22 0 0 0 chr11 6462230 6462252 -142321220 + AT_rich Low_complexity Low_complexity 1 22 0 455 291 200 15 chr11 6462676 6463151 -142320321 + L1MC4 LINE L1 5255 5817 -1991 2145 132 0 0 chr11 6463450 6463745 -142319727 - AluSx SINE Alu -15 297 3 1671 240 52 75 chr11 6463859 6464491 -142318981 - L1ME3A LINE L1 -9 6161 5547 1881 164 106 13 chr11 6464491 6464870 -142318602 + MLT2D LTR ERVL 1 414 0 1671 240 52 75 chr11 6464870 6464970 -142318502 - L1ME3A LINE L1 -623 5547 5446 447 286 117 34 chr11 6465000 6465527 -142317945 - L1M3 LINE L1 -329 5839 5255 582 311 53 19 chr11 6465583 6465789 -142317683 + MIR SINE MIR 2 214 -48 389 326 117 25 chr11 6465829 6466231 -142317241 - L1M3 LINE L1 -941 5205 4767 301 279 0 0 chr11 6466547 6466608 -142316864 + MER91B DNA MER1_type 1 61 -129 517 277 32 0 chr11 6466896 6467051 -142316421 + MLT1J1 LTR MaLR 1 160 -286 407 234 28 19 chr11 6467087 6467194 -142316278 + MER21B LTR ERV1 1 108 -755 1237 204 29 32 chr11 6467294 6467573 -142315899 + MER21B LTR ERV1 475 752 -111 495 285 140 10 chr11 6467601 6467801 -142315671 + MLT1J2 LTR MaLR 196 421 -29 241 405 72 27 chr11 6468302 6468675 -142314797 + L2 LINE L2 2850 3239 -33 188 271 0 0 chr11 6468816 6468864 -142314608 + L2 LINE L2 3263 3310 -3 747 245 164 2 chr11 6469316 6469751 -142313721 + L1MC4 LINE L1 6468 7072 -970 1066 278 16 0 chr11 6469753 6470066 -142313406 + L1MC4 LINE L1 7239 7556 -486 1797 140 52 3 chr11 6470066 6470352 -142313120 - AluJb SINE Alu -12 300 1 21 57 0 0 chr11 6470872 6470907 -142312565 + AT_rich Low_complexity Low_complexity 1 35 0 526 12 60 0 chr11 6471695 6471778 -142311694 + (TA)n Simple_repeat Simple_repeat 2 89 0 183 42 0 0 chr11 6472529 6472553 -142310919 + (CA)n Simple_repeat Simple_repeat 1 24 0 393 260 122 8 chr11 6473324 6473447 -142310025 + MIR SINE MIR 53 189 -73 3827 271 97 36 chr11 6473453 6475084 -142308388 - L2 LINE L2 0 3313 1551 783 254 15 5 chr11 6475084 6475289 -142308183 - MER63A DNA MER1_type -3 207 1 3827 271 97 36 chr11 6475289 6475402 -142308070 - L2 LINE L2 -1762 1551 1446 25 75 0 0 chr11 6475699 6475752 -142307720 + AT_rich Low_complexity Low_complexity 1 53 0 398 323 124 33 chr11 6475952 6476553 -142306919 + L2 LINE L2 1921 2665 -649 444 280 35 30 chr11 6476609 6476809 -142306663 + L1ME4a LINE L1 5635 5835 -286 350 254 88 18 chr11 6477881 6477995 -142305477 + L2 LINE L2 3151 3272 0 330 270 204 26 chr11 6478305 6478457 -142305015 + L2 LINE L2 2236 2414 -900 623 272 94 6 chr11 6478691 6478741 -142304731 - MIR SINE MIR -1 261 217 184 59 59 0 chr11 6478741 6478775 -142304697 + (TA)n Simple_repeat Simple_repeat 1 36 0 623 272 94 6 chr11 6478775 6478904 -142304568 - MIR SINE MIR -45 217 66 522 325 101 18 chr11 6479138 6479699 -142303773 - HAL1b LINE L1 -682 1686 361 698 365 100 9 chr11 6480948 6481509 -142301963 - L2 LINE L2 -338 2976 2365 920 346 64 10 chr11 6482331 6482739 -142300733 + LTR16A LTR ERVL 16 445 -5 29 28 0 0 chr11 6483266 6483302 -142300170 + AT_rich Low_complexity Low_complexity 1 36 0 291 270 92 46 chr11 6485685 6485859 -142297613 + MLT1K LTR MaLR 174 355 -233 507 194 0 43 chr11 6485965 6486151 -142297321 + GA-rich Low_complexity Low_complexity 1 178 0 182 130 39 26 chr11 6487122 6487199 -142296273 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 487 341 59 15 chr11 6487226 6487634 -142295838 - L1ME LINE L1 -475 5687 5262 1569 92 8 0 chr11 6487716 6487955 -142295517 - L1MA5 LINE L1 -2 6298 6058 2423 45 0 3 chr11 6488024 6488316 -142295156 - AluY SINE Alu -20 291 1 184 298 85 0 chr11 6488686 6488733 -142294739 + L2 LINE L2 3168 3218 -54 667 62 21 0 chr11 6489086 6489183 -142294289 + AluY SINE Alu 213 311 0 300 313 45 18 chr11 6489518 6489630 -142293842 + L2 LINE L2 3152 3266 -6 32 57 0 0 chr11 6489692 6489745 -142293727 + AT_rich Low_complexity Low_complexity 1 53 0 985 145 0 13 chr11 6490120 6490279 -142293193 - FRAM SINE Alu -9 167 11 1427 328 76 57 chr11 6490457 6492157 -142291315 - L1ME LINE L1 -722 5442 3699 319 302 24 40 chr11 6492256 6492382 -142291090 + L2 LINE L2 3190 3313 0 451 354 62 11 chr11 6492522 6492796 -142290676 - HAL1b LINE L1 -759 589 302 1637 264 16 75 chr11 6493820 6494450 -142289022 + MLT1E LTR MaLR 1 593 0 213 39 0 0 chr11 6494809 6494835 -142288637 + (T)n Simple_repeat Simple_repeat 1 26 0 6530 16 10 1 chr11 6494871 6495667 -142287805 - L1HS LINE L1 0 6155 5353 349 23 0 0 chr11 6495664 6495707 -142287765 + L1P LINE L1 1945 1987 -4159 * 876 238 63 0 chr11 6496179 6496385 -142287087 + MIR SINE MIR 1 219 -43 207 0 0 0 chr11 6496922 6496945 -142286527 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 231 315 94 31 chr11 6497574 6497701 -142285771 - L2 LINE L2 -2 3270 3136 180 0 0 0 chr11 6498460 6498480 -142284992 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 637 292 31 122 chr11 6498668 6499434 -142284038 - L2 LINE L2 -1 3312 2616 227 229 38 84 chr11 6499632 6499763 -142283709 + LTR67 LTR ERVL 6 130 -427 * 1679 239 69 58 chr11 6499707 6500227 -142283245 + MLT1F LTR MaLR 7 532 -10 391 334 89 38 chr11 6500263 6500577 -142282895 + LTR67 LTR ERVL 117 446 -111 264 255 28 9 chr11 6500656 6500762 -142282710 - MLT1L LTR MaLR -16 599 492 586 296 11 0 chr11 6500885 6501064 -142282408 - MLT1L LTR MaLR -345 270 90 1036 309 146 6 chr11 6501143 6501664 -142281808 - L2 LINE L2 -683 2631 2038 189 0 0 0 chr11 6501898 6501919 -142281553 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 324 48 0 0 chr11 6502705 6502747 -142280725 + (CA)n Simple_repeat Simple_repeat 2 43 0 552 309 41 37 chr11 6503367 6503613 -142279859 + MIR SINE MIR 5 251 -11 709 261 77 18 chr11 6503833 6504055 -142279417 + MIR SINE MIR 14 248 -14 1973 142 3 0 chr11 6504262 6504568 -142278904 + AluSq SINE Alu 1 307 0 243 246 0 33 chr11 6504951 6505012 -142278460 + CT-rich Low_complexity Low_complexity 3 61 0 354 294 55 0 chr11 6506081 6506190 -142277282 + L3 LINE CR1 272 386 -1191 310 359 41 7 chr11 6506436 6506581 -142276891 + L3 LINE CR1 1067 1216 -361 431 253 116 50 chr11 6506596 6506837 -142276635 + MIR SINE MIR 2 258 -4 237 163 0 0 chr11 6506900 6506949 -142276523 + T-rich Low_complexity Low_complexity 1 49 0 1131 210 213 9 chr11 6507044 6507373 -142276099 - MSTD LTR MaLR 0 396 1 221 348 0 14 chr11 6508068 6508137 -142275335 + MIR SINE MIR 20 87 -175 459 252 122 22 chr11 6508139 6508361 -142275111 - MLT1H LTR MaLR 0 555 312 1030 196 14 9 chr11 6508375 6508594 -142274878 - MLT1A2 LTR MaLR 0 374 155 2457 122 3 0 chr11 6508603 6508972 -142274500 - L1PB1 LINE L1 -1 6150 5781 309 183 0 0 chr11 6508972 6509032 -142274440 + (TA)n Simple_repeat Simple_repeat 2 61 0 324 283 0 22 chr11 6509032 6509124 -142274348 + L1MC4 LINE L1 6614 6703 -1339 * 327 311 0 0 chr11 6509044 6509134 -142274338 - L1MC4 LINE L1 -1339 6703 6614 276 149 0 0 chr11 6509141 6509188 -142274284 + (TA)n Simple_repeat Simple_repeat 2 48 0 3613 131 6 4 chr11 6509188 6510092 -142273380 - L1P5 LINE L1 -360 5791 4888 2191 191 0 0 chr11 6510092 6510548 -142272924 + L1P5 LINE L1 4403 4858 -1288 517 164 207 7 chr11 6510553 6510693 -142272779 - MLT1A2 LTR MaLR -218 156 1 698 256 57 9 chr11 6510774 6510985 -142272487 - MLT1H LTR MaLR -326 223 3 288 293 50 0 chr11 6510988 6511087 -142272385 + MIR SINE MIR 86 189 -73 404 280 96 0 chr11 6511142 6511299 -142272173 - MIR SINE MIR -3 259 88 263 418 7 7 chr11 6511718 6511859 -142271613 + L2 LINE L2 2509 2649 -665 186 122 41 20 chr11 6512383 6512432 -142271040 + GA-rich Low_complexity Low_complexity 3 52 0 385 240 34 75 chr11 6512451 6512597 -142270875 + MIR SINE MIR 82 221 -41 306 0 0 0 chr11 6512597 6512631 -142270841 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 169 68 34 chr11 6512682 6512741 -142270731 + L3 LINE CR1 1514 1574 -3 406 296 152 73 chr11 6513348 6514215 -142269257 - L1M2 LINE L1 -5538 1311 550 1852 243 109 46 chr11 6516697 6517323 -142266149 - L2 LINE L2 -339 2975 2311 408 342 32 11 chr11 6517437 6517624 -142265848 - L3 LINE CR1 -176 1401 1211 416 222 193 22 chr11 6517789 6517924 -142265548 + MER5A DNA MER1_type 29 186 -3 258 279 51 13 chr11 6517941 6518020 -142265452 - MIR SINE MIR -70 138 57 * 560 316 113 42 chr11 6518015 6518428 -142265044 - L3 LINE CR1 -588 989 547 563 162 19 195 chr11 6518428 6518638 -142264834 + MER5B DNA MER1_type 4 176 -2 334 224 241 9 chr11 6520084 6520200 -142263272 + MIR SINE MIR 2 144 -118 408 161 69 0 chr11 6520392 6520479 -142262993 + MIR SINE MIR 68 160 -102 606 154 173 0 chr11 6520493 6520649 -142262823 - MER53 DNA DNA -6 183 1 197 333 118 0 chr11 6520650 6520752 -142262720 + MIR SINE MIR 149 262 0 219 410 38 0 chr11 6521593 6521698 -142261774 - L2 LINE L2 -8 3264 3156 4373 273 66 29 chr11 6522876 6524541 -142258931 - L2 LINE L2 -2 3311 1586 213 271 0 17 chr11 6524582 6524641 -142258831 - L2 LINE L2 -1075 2239 2182 1873 157 68 6 chr11 6524641 6524979 -142258493 - MLT1A1 LTR MaLR 0 365 7 4279 244 136 21 chr11 6524986 6526490 -142256982 - L2 LINE L2 -1129 2185 510 381 293 126 18 chr11 6526603 6526825 -142256647 - L2 LINE L2 -826 2488 2243 270 377 66 0 chr11 6526882 6526988 -142256484 + MER5B DNA MER1_type 2 114 -64 389 309 50 53 chr11 6529063 6529442 -142254030 + L1 LINE L1 2970 3347 -2799 280 209 110 11 chr11 6529751 6529842 -142253630 - L1ME LINE L1 -477 5644 5545 281 219 14 17 chr11 6529865 6529953 -142253519 + L1 LINE L1 3604 3690 -2456 23 0 0 0 chr11 6530123 6530146 -142253326 + AT_rich Low_complexity Low_complexity 1 23 0 1726 216 43 11 chr11 6530225 6530669 -142252803 - L1MB8 LINE L1 -7 6171 5714 670 284 67 69 chr11 6530894 6531370 -142252102 - MLT1J LTR MaLR -31 480 6 25 0 0 0 chr11 6531682 6531707 -142251765 + AT_rich Low_complexity Low_complexity 1 25 0 390 21 0 0 chr11 6532326 6532373 -142251099 + (CA)n Simple_repeat Simple_repeat 2 48 0 28 29 0 0 chr11 6532659 6532694 -142250778 + AT_rich Low_complexity Low_complexity 1 35 0 2212 102 0 0 chr11 6533067 6533374 -142250098 - AluY SINE Alu 0 307 1 512 280 63 21 chr11 6533544 6533687 -142249785 + MIR SINE MIR 23 171 -91 203 361 0 15 chr11 6533818 6533948 -142249524 + CT-rich Low_complexity Low_complexity 4 131 0 703 291 60 98 chr11 6534031 6534512 -142248960 - L2 LINE L2 -4 3268 2806 204 156 22 0 chr11 6534822 6534867 -142248605 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2476 40 0 0 chr11 6535287 6535583 -142247889 + L1PA8 LINE L1 5874 6169 -3 2228 103 10 3 chr11 6535823 6536123 -142247349 - AluSx SINE Alu -10 302 1 568 317 204 24 chr11 6536716 6537293 -142246179 + L2 LINE L2 1709 2389 -925 490 209 243 46 chr11 6537266 6537529 -142245943 + L2 LINE L2 2932 3246 -67 * 507 353 55 36 chr11 6537625 6537988 -142245484 + L2 LINE L2 2417 2786 -528 311 313 139 72 chr11 6538087 6538271 -142245201 + L2 LINE L2 2918 3088 -184 2049 110 0 28 chr11 6538271 6538594 -142244878 + AluSg SINE Alu 1 315 0 311 313 139 72 chr11 6538594 6538740 -142244732 + L2 LINE L2 3088 3271 -1 2182 115 17 136 chr11 6539434 6539913 -142243559 - MSTC LTR MaLR -6 422 1 326 325 156 12 chr11 6540643 6540803 -142242669 + L3 LINE CR1 206 388 -1189 193 246 145 29 chr11 6541108 6541177 -142242295 - MER5A DNA MER1_type -67 122 46 * 325 323 0 11 chr11 6541118 6541211 -142242261 + MER5A DNA MER1_type 98 189 0 2591 203 44 32 chr11 6541559 6542235 -142241237 + MER63C DNA MER1_type 1 684 -246 763 197 19 110 chr11 6542313 6542577 -142240895 + MER63C DNA MER1_type 691 930 0 26 0 0 0 chr11 6544363 6544389 -142239083 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 6544415 6544450 -142239022 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 128 0 0 chr11 6544459 6544498 -142238974 + (GA)n Simple_repeat Simple_repeat 1 39 0 306 210 101 67 chr11 6544523 6544642 -142238830 - HAL1 LINE L1 -106 2401 2279 310 195 12 49 chr11 6544654 6544736 -142238736 - L1MC4 LINE L1 -1339 6703 6625 26 30 0 0 chr11 6545072 6545105 -142238367 + AT_rich Low_complexity Low_complexity 1 33 0 255 271 14 0 chr11 6545209 6545279 -142238193 + MIR SINE MIR 85 155 -107 776 271 121 16 chr11 6545841 6546294 -142237178 - HAL1 LINE L1 -761 1746 1246 2555 102 19 11 chr11 6546673 6547045 -142236427 - THE1C LTR MaLR 0 375 1 10050 114 52 5 chr11 6547045 6548553 -142234919 - THE1C-int LTR MaLR 0 1580 1 2537 87 11 8 chr11 6548558 6548927 -142234545 - THE1C LTR MaLR -5 370 1 1039 153 58 36 chr11 6550784 6551007 -142232465 + L1MB3 LINE L1 5949 6176 -7 779 303 25 8 chr11 6552342 6552779 -142230693 - LTR33 LTR ERVL 0 521 14 187 225 167 25 chr11 6553935 6554055 -142229417 - MIR3 SINE MIR -61 147 11 1150 175 0 11 chr11 6555460 6555779 -142227693 - MLT1A1 LTR MaLR 0 365 1 2302 173 23 17 chr11 6555779 6556247 -142227225 - MLT1A1-int LTR MaLR 0 1735 1214 3209 173 14 53 chr11 6556537 6557230 -142226242 - MLT1A1-int LTR MaLR -1069 666 1 244 282 167 0 chr11 6557348 6557426 -142226046 + L2 LINE L2 3201 3291 -22 301 355 161 0 chr11 6557655 6557810 -142225662 - MIR SINE MIR -77 185 6 183 205 0 0 chr11 6558048 6558087 -142225385 + CT-rich Low_complexity Low_complexity 4 42 0 226 122 0 0 chr11 6558106 6558155 -142225317 - L1MC1 LINE L1 -2 6331 6283 243 0 0 0 chr11 6558565 6558592 -142224880 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 345 24 0 0 chr11 6558591 6558633 -142224839 + (GA)n Simple_repeat Simple_repeat 1 42 0 441 194 241 36 chr11 6558750 6559003 -142224469 - L1MC5 LINE L1 -32 7929 7625 894 244 148 46 chr11 6559067 6559784 -142223688 - HAL1 LINE L1 -628 1879 1090 594 196 98 25 chr11 6560959 6561122 -142222350 - MER91B DNA MER1_type -2 188 14 303 326 42 0 chr11 6561172 6561267 -142222205 - L2 LINE L2 -18 3254 3156 478 267 0 8 chr11 6561483 6561614 -142221858 - MER94 DNA DNA 0 134 5 236 324 0 0 chr11 6561872 6561940 -142221532 - MLT1I LTR MaLR -244 165 98 484 336 8 0 chr11 6563090 6563218 -142220254 + L2 LINE L2 3141 3269 -3 875 290 126 9 chr11 6563504 6563939 -142219533 + LTR16C LTR ERVL 1 486 -5 459 318 76 21 chr11 6565079 6565315 -142218157 - MIR SINE MIR 0 262 14 470 304 154 0 chr11 6565522 6565749 -142217723 + MIR SINE MIR 1 262 0 197 328 0 16 chr11 6567726 6567790 -142215682 - L3 LINE CR1 -3 1574 1512 741 319 57 15 chr11 6568033 6568437 -142215035 + L2 LINE L2 2862 3282 -31 2172 132 0 10 chr11 6571635 6571939 -142211533 - AluSx SINE Alu -11 301 1 2407 86 0 0 chr11 6571950 6572251 -142211221 - AluY SINE Alu -10 301 1 832 167 7 7 chr11 6572501 6572651 -142210821 + AluSp/q SINE Alu 161 310 -3 26 50 0 0 chr11 6574338 6574378 -142209094 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr11 6577442 6577486 -142205986 + AT_rich Low_complexity Low_complexity 1 44 0 300 230 24 103 chr11 6577524 6577650 -142205822 - L1ME3 LINE L1 -93 6138 6023 401 277 115 49 chr11 6577807 6578258 -142205214 - L1ME3 LINE L1 -346 5885 5405 555 265 34 20 chr11 6578316 6578614 -142204858 - L1ME3 LINE L1 -884 5331 5030 1672 182 32 46 chr11 6578625 6578998 -142204474 - MLT1A2 LTR MaLR -6 368 1 557 262 89 52 chr11 6579102 6579583 -142203889 - L1ME3 LINE L1 -1315 4900 4402 2085 120 10 0 chr11 6579643 6579934 -142203538 - AluSq SINE Alu -19 294 1 616 275 27 8 chr11 6580054 6580312 -142203160 - L1ME3 LINE L1 -2259 3956 3694 291 62 0 0 chr11 6580480 6580563 -142202909 - Alu SINE Alu 0 336 254 268 233 31 70 chr11 6580618 6580747 -142202725 - L1ME3 LINE L1 -4738 1658 1535 309 349 120 5 chr11 6581094 6581286 -142202186 - L1ME3 LINE L1 -5840 365 152 311 384 90 35 chr11 6581608 6581897 -142201575 + L2 LINE L2 2967 3271 -1 1366 171 65 92 chr11 6582843 6583310 -142200162 - MER66A LTR ERV1 0 478 97 783 196 4 92 chr11 6583371 6583600 -142199872 + MER63A DNA MER1_type 1 209 -1 583 281 40 37 chr11 6584219 6584547 -142198925 - L1ME3A LINE L1 -221 5932 5604 1130 298 107 40 chr11 6584655 6585115 -142198357 - L1ME3A LINE L1 -1874 4255 3827 183 80 0 0 chr11 6585115 6585140 -142198332 + (TG)n Simple_repeat Simple_repeat 2 26 0 1130 298 107 40 chr11 6585140 6586171 -142197301 - L1ME3A LINE L1 -2302 3827 2664 11407 32 1 1 chr11 6586432 6587874 -142195598 - L1PA2 LINE L1 -1493 4653 3212 7915 8 0 4 chr11 6587874 6589432 -142194040 + L1PA2 LINE L1 4624 6155 0 261 308 22 11 chr11 6589454 6589636 -142193836 - L1ME3A LINE L1 -3853 2276 2093 21 36 0 0 chr11 6589644 6589672 -142193800 + AT_rich Low_complexity Low_complexity 1 28 0 628 273 90 17 chr11 6590308 6590689 -142192783 - L1MEd LINE L1 -4862 1257 908 1287 189 56 50 chr11 6591356 6591751 -142191721 + L1ME1 LINE L1 5644 6028 -138 186 396 36 0 chr11 6591913 6592024 -142191448 - L2 LINE L2 -1683 1631 1517 1849 94 0 0 chr11 6592025 6592258 -142191214 - AluSq SINE Alu -21 292 60 1255 100 6 0 chr11 6592258 6592418 -142191054 - AluSq SINE Alu -152 161 1 234 357 14 14 chr11 6592530 6592673 -142190799 + MER117 DNA MER1_type 2 144 -53 1350 143 0 63 chr11 6592815 6593053 -142190419 + AluJb SINE Alu 68 290 -22 1310 264 33 24 chr11 6593345 6593796 -142189676 - LTR16A1 LTR ERVL -2 455 1 589 307 126 69 chr11 6595103 6595686 -142187786 - L2 LINE L2 -6 3266 2656 2883 213 37 43 chr11 6595778 6596664 -142186808 - L1ME1 LINE L1 -4 6162 5282 * 18096 189 10 16 chr11 6596633 6601800 -142181672 - L1PA13 LINE L1 -5 7596 2471 2123 319 6 9 chr11 6601872 6602552 -142180920 - L1PA13 LINE L1 -5936 1645 968 2528 124 8 3 chr11 6602618 6602980 -142180492 + THE1B LTR MaLR 1 364 0 1929 164 40 11 chr11 6603124 6603478 -142179994 - THE1B LTR MaLR 0 364 1 11519 95 8 4 chr11 6603478 6605052 -142178420 - THE1B-int LTR MaLR 0 1580 1 2237 105 44 36 chr11 6605052 6605413 -142178059 - THE1B LTR MaLR 0 364 1 2474 209 63 37 chr11 6605545 6606251 -142177221 - L1M4 LINE L1 -803 5343 4610 306 0 0 0 chr11 6606251 6606285 -142177187 + (CA)n Simple_repeat Simple_repeat 2 35 0 2474 209 63 37 chr11 6606285 6606438 -142177034 - L1M4 LINE L1 -1536 4610 4462 1066 259 41 12 chr11 6606441 6606785 -142176687 - L1MEc LINE L1 -5999 397 44 1518 307 87 60 chr11 6606785 6607896 -142175576 - L2 LINE L2 -809 2505 1365 227 210 16 32 chr11 6608119 6608181 -142175291 - L1ME4a LINE L1 -82 6039 5979 2127 124 0 10 chr11 6608555 6608853 -142174619 - AluSq SINE Alu -18 295 1 261 0 0 0 chr11 6610007 6610036 -142173436 + (T)n Simple_repeat Simple_repeat 1 29 0 1072 129 72 5 chr11 6610501 6610694 -142172778 + L1MB4 LINE L1 5975 6180 0 237 33 0 0 chr11 6610697 6610727 -142172745 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 285 136 56 chr11 6610977 6611191 -142172281 - MIR SINE MIR -29 233 3 282 167 15 30 chr11 6614191 6614257 -142169215 + Charlie7 DNA MER1_type 41 105 -2507 1822 230 127 44 chr11 6614379 6615087 -142168385 + LTR41 LTR ERVL 1 767 -6 382 147 100 73 chr11 6615097 6615247 -142168225 - Charlie7 DNA MER1_type -28 2584 2431 276 202 73 65 chr11 6615268 6615392 -142168080 - Charlie7 DNA MER1_type -1891 721 597 21 0 0 0 chr11 6615452 6615473 -142167999 + AT_rich Low_complexity Low_complexity 1 21 0 291 271 110 8 chr11 6615530 6615648 -142167824 + L2 LINE L2 2630 2759 -555 236 241 203 45 chr11 6616244 6616377 -142167095 + MIR SINE MIR 109 262 0 218 286 0 0 chr11 6616770 6616840 -142166632 + L2 LINE L2 2994 3063 -209 228 258 90 22 chr11 6617017 6617106 -142166366 - MIR3 SINE MIR -28 180 86 228 232 85 24 chr11 6617229 6617311 -142166161 + L2 LINE L2 3182 3268 -4 281 347 146 22 chr11 6618130 6618398 -142165074 - L2 LINE L2 0 3313 3013 271 367 31 56 chr11 6618411 6618607 -142164865 - L2 LINE L2 -458 2856 2666 341 295 37 29 chr11 6619028 6619272 -142164200 - L1MDa LINE L1 -1435 5105 4860 308 304 88 35 chr11 6619272 6619499 -142163973 - L2 LINE L2 -23 3290 3052 778 277 126 47 chr11 6619579 6620172 -142163300 - L1MDa LINE L1 -1776 4764 4066 8505 35 0 0 chr11 6620172 6621967 -142161505 - L1PA3 LINE L1 0 6155 4357 778 277 126 47 chr11 6621967 6622326 -142161146 - L1MDa LINE L1 -2474 4066 3737 435 314 61 10 chr11 6622574 6622982 -142160490 - L1MDa LINE L1 -3208 3332 2904 2008 139 33 0 chr11 6623403 6623752 -142159720 - AluSx SINE Alu 0 359 1 251 242 95 32 chr11 6624001 6624256 -142159216 - L1MDa LINE L1 -3827 2713 2446 252 0 0 0 chr11 6624267 6624295 -142159177 + (T)n Simple_repeat Simple_repeat 1 28 0 265 394 0 15 chr11 6624426 6624558 -142158914 + L2 LINE L2 2562 2691 -623 921 342 138 35 chr11 6624647 6625684 -142157788 - L2 LINE L2 -839 2475 1332 319 277 77 108 chr11 6625772 6625902 -142157570 - MIR SINE MIR -105 157 32 268 278 48 63 chr11 6626817 6626943 -142156529 + L2 LINE L2 3149 3272 0 308 306 7 35 chr11 6627624 6627768 -142155704 - L1ME4a LINE L1 -112 6009 5870 237 287 105 27 chr11 6627917 6628213 -142155259 - L1ME4a LINE L1 -320 5801 5483 21 0 0 0 chr11 6628225 6628246 -142155226 + AT_rich Low_complexity Low_complexity 1 21 0 2365 32 39 39 chr11 6628390 6628698 -142154774 - AluY SINE Alu -3 308 1 282 270 37 42 chr11 6628809 6629024 -142154448 - L1ME4a LINE L1 -2341 5467 5254 820 222 74 17 chr11 6629181 6629411 -142154061 - MIR SINE MIR -2 260 18 3861 56 4 0 chr11 6629677 6630163 -142153309 - L1PA8 LINE L1 -11 6161 5674 3660 82 15 6 chr11 6630170 6631027 -142152445 - L1P3 LINE L1 -368 5786 4920 381 22 0 0 chr11 6631096 6631142 -142152330 + (CA)n Simple_repeat Simple_repeat 1 46 0 1926 145 0 6 chr11 6631222 6631539 -142151933 - L1PB1 LINE L1 -3 6148 5834 761 232 46 12 chr11 6631702 6631943 -142151529 + L1MB7 LINE L1 5935 6183 -1 257 333 25 0 chr11 6631998 6632160 -142151312 + Tigger8 DNA MER2_type 290 455 -211 311 322 80 36 chr11 6632361 6632662 -142150810 - L1ME4a LINE L1 -1325 4821 4508 2559 186 111 43 chr11 6632833 6633619 -142149853 - L1ME2 LINE L1 -9 6155 5317 1057 240 5 0 chr11 6633640 6633848 -142149624 - AluJb SINE Alu -20 292 84 358 162 0 15 chr11 6633863 6633931 -142149541 - FLAM SINE Alu -10 123 57 361 273 96 20 chr11 6634261 6634510 -142148962 - L1ME2 LINE L1 -2191 3955 3688 317 194 14 0 chr11 6634972 6635044 -142148428 + MER116 DNA Mariner 2 74 -6 8298 79 6 0 chr11 6635241 6637150 -142146322 - L1PA7 LINE L1 0 6154 4236 876 256 176 36 chr11 6637150 6637541 -142145931 + L2 LINE L2 2867 3312 -1 494 157 12 11 chr11 6637568 6637726 -142145746 + CT-rich Low_complexity Low_complexity 1 158 0 241 323 65 0 chr11 6638127 6638220 -142145252 + MIR SINE MIR 18 116 -92 246 255 0 0 chr11 6638496 6638547 -142144925 - L2 LINE L2 -23 3290 3240 259 275 66 22 chr11 6638565 6638656 -142144816 - MIR SINE MIR -30 232 138 451 237 61 9 chr11 6639136 6639250 -142144222 + MIR SINE MIR 24 143 -119 191 325 24 0 chr11 6639629 6639712 -142143760 - L2 LINE L2 -527 2787 2703 284 355 107 25 chr11 6640846 6641043 -142142429 - L3 LINE CR1 -227 1350 1138 5568 84 24 16 chr11 6641087 6641906 -142141566 + L1MA1 LINE L1 5473 6298 -4 22 56 0 0 chr11 6641938 6641974 -142141498 + AT_rich Low_complexity Low_complexity 1 36 0 990 328 177 16 chr11 6642020 6642709 -142140763 - L3 LINE CR1 -550 1027 228 687 268 97 68 chr11 6643548 6643973 -142139499 - L2 LINE L2 -695 2619 2183 246 325 44 100 chr11 6644986 6645146 -142138326 - MIR SINE MIR -70 192 42 483 221 177 12 chr11 6645211 6645379 -142138093 - HAL1 LINE L1 -93 2414 2275 285 51 0 0 chr11 6645379 6645418 -142138054 + (CA)n Simple_repeat Simple_repeat 1 39 0 483 221 177 12 chr11 6645418 6645571 -142137901 - HAL1 LINE L1 -232 2275 2040 2000 260 70 55 chr11 6645571 6646625 -142136847 + L2 LINE L2 2241 3313 0 330 26 0 0 chr11 6646657 6646696 -142136776 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 154 18 35 chr11 6646813 6646982 -142136490 + L1PA13 LINE L1 5995 6160 -3 1772 274 90 64 chr11 6647003 6647505 -142135967 - L1M4 LINE L1 -1302 4844 4357 7292 40 0 11 chr11 6647505 6648637 -142134835 + L1PA4 LINE L1 5033 6154 -1 1772 274 90 64 chr11 6648637 6650134 -142133338 - L1M4 LINE L1 -1789 4357 2793 653 225 46 0 chr11 6650336 6650487 -142132985 + MER77 LTR ERV1 1 158 -447 601 158 0 0 chr11 6650494 6650589 -142132883 + MER77 LTR ERV1 511 605 0 1825 123 40 7 chr11 6652452 6652753 -142130719 - L1PA6 LINE L1 -58 6096 5786 4359 169 42 28 chr11 6653228 6654029 -142129443 - L1PA16 LINE L1 -1 6165 5334 1571 185 0 50 chr11 6654029 6654332 -142129140 + AluJb SINE Alu 1 288 -24 4359 169 42 28 chr11 6654332 6654566 -142128906 - L1PA16 LINE L1 -832 5334 5105 10552 219 30 18 chr11 6654709 6656672 -142126800 - L1PA15-16 LINE L1 -869 5980 4042 4938 32 0 0 chr11 6656672 6657256 -142126216 - L1PA4 LINE L1 0 6155 5572 10552 219 30 18 chr11 6657256 6657733 -142125739 - L1PA15-16 LINE L1 -2807 4042 3572 1092 117 0 0 chr11 6657733 6657895 -142125577 - L1PB1 LINE L1 -2 6149 5988 10552 219 30 18 chr11 6657895 6658771 -142124701 - L1PA15-16 LINE L1 -3277 3572 2627 1677 224 91 83 chr11 6658791 6659527 -142123945 - L1ME1 LINE L1 -5 6230 5489 4461 257 84 27 chr11 6659542 6661114 -142122358 - L1ME1 LINE L1 -806 5409 3928 1873 78 0 4 chr11 6661114 6661346 -142122126 - AluY SINE Alu -5 306 76 4461 257 84 27 chr11 6661346 6661406 -142122066 - L1ME1 LINE L1 -2287 3928 3873 15456 137 29 33 chr11 6661406 6664147 -142119325 + Tigger4(Zombi) DNA MER2_type 1 2731 0 4461 257 84 27 chr11 6664147 6664857 -142118615 - L1ME1 LINE L1 -2342 3873 2909 1083 246 71 16 chr11 6664962 6665549 -142117923 - L1ME1 LINE L1 -3594 2621 2031 2152 228 49 72 chr11 6665551 6665813 -142117659 - L1MEc LINE L1 -3009 3206 2940 1828 157 35 7 chr11 6665813 6666099 -142117373 + AluJo SINE Alu 1 294 -18 2152 228 49 72 chr11 6666099 6667121 -142116351 - L1MEc LINE L1 -3275 2940 1970 319 286 11 0 chr11 6667194 6667285 -142116187 - MLT1K LTR MaLR -330 258 167 1032 186 83 10 chr11 6667732 6667936 -142115536 - MER20 DNA MER1_type 0 219 1 222 150 0 0 chr11 6668175 6668215 -142115257 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 352 180 90 60 chr11 6668465 6668565 -142114907 - L2 LINE L2 -17 3296 3194 12249 182 54 28 chr11 6668566 6669068 -142114404 - L1MA4A LINE L1 -7 6998 6510 297 0 0 0 chr11 6669068 6669101 -142114371 + (TA)n Simple_repeat Simple_repeat 2 34 0 12249 182 54 28 chr11 6669101 6669894 -142113578 - L1MA4A LINE L1 -495 6510 5739 2928 6 0 0 chr11 6669894 6670212 -142113260 - AluYb8 SINE Alu 0 318 1 12249 182 54 28 chr11 6670212 6670656 -142112816 - L1MA4A LINE L1 -1266 5739 5308 2218 89 7 0 chr11 6670656 6670960 -142112512 - AluSp SINE Alu 0 306 1 12249 182 54 28 chr11 6670960 6673388 -142110084 - L1MA4A LINE L1 -1697 5308 2944 2290 114 0 0 chr11 6673388 6673687 -142109785 - AluSq SINE Alu -14 299 1 12249 182 54 28 chr11 6673687 6676266 -142107206 - L1MA4A LINE L1 -4061 2944 43 741 211 0 0 chr11 6676296 6676429 -142107043 - FLAM_A SINE Alu 0 133 1 235 235 102 31 chr11 6676649 6676747 -142106725 + L2 LINE L2 3164 3268 -4 938 258 67 0 chr11 6678760 6679000 -142104472 + MIR SINE MIR 7 262 0 1524 191 86 3 chr11 6679007 6679322 -142104150 - MER2 DNA MER2_type 0 344 4 2218 116 3 0 chr11 6682147 6682441 -142101031 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr11 6682918 6682941 -142100531 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 258 90 17 chr11 6683501 6683589 -142099883 + MIR SINE MIR 9 101 -107 534 367 25 108 chr11 6683591 6684139 -142099333 - MLT1J LTR MaLR -7 504 2 240 301 29 19 chr11 6684146 6684249 -142099223 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 185 378 61 0 chr11 6684293 6684375 -142099097 - L2 LINE L2 -49 3223 3137 305 258 0 0 chr11 6685553 6685615 -142097857 + MLT1J2 LTR MaLR 389 450 0 584 308 94 26 chr11 6685946 6686180 -142097292 + MIR SINE MIR 9 258 -4 724 300 38 9 chr11 6889430 6889664 -141893808 + MIR SINE MIR 22 262 0 8119 22 0 1 chr11 6889796 6891348 -141892124 - L1PA3 LINE L1 -223 5932 4383 284 300 24 24 chr11 6891630 6891800 -141891672 + (CGAGG)n Simple_repeat Simple_repeat 2 171 0 1199 149 5 36 chr11 6893367 6893588 -141889884 - AluJo SINE Alu -98 214 1 1513 116 0 35 chr11 6893704 6893936 -141889536 - L1PA8A LINE L1 0 6131 5908 281 317 8 8 chr11 6894403 6894526 -141888946 + GA-rich Low_complexity Low_complexity 5 127 0 259 155 24 32 chr11 6895203 6895333 -141888139 + C-rich Low_complexity Low_complexity 1 128 0 750 317 75 36 chr11 6896305 6896693 -141886779 + L2 LINE L2 2870 3272 0 304 235 54 5 chr11 6897135 6897231 -141886241 - MIR SINE MIR -62 146 49 1463 138 94 0 chr11 6897258 6897482 -141885990 - AluJo SINE Alu -57 255 11 481 298 137 6 chr11 6898089 6898250 -141885222 + MIR SINE MIR 46 227 -35 1668 238 96 38 chr11 6898982 6899688 -141883784 + L1M1 LINE L1 2286 3032 -4533 1428 109 5 0 chr11 6899720 6899904 -141883568 + AluSx SINE Alu 1 185 -127 4892 136 31 31 chr11 6899904 6901269 -141882203 + L1M2 LINE L1 4453 5813 -478 345 257 7 44 chr11 6902903 6903039 -141880433 + GA-rich Low_complexity Low_complexity 4 134 0 528 293 47 60 chr11 6903101 6903316 -141880156 + MIR SINE MIR 2 213 -49 327 219 124 52 chr11 6903623 6903762 -141879710 - MIR SINE MIR -52 156 2 328 219 105 79 chr11 6904306 6904420 -141879052 - L2 LINE L2 -34 3238 3122 298 192 128 0 chr11 6904523 6904601 -141878871 - MIR3 SINE MIR -37 171 84 1700 102 9 0 chr11 6904798 6905023 -141878449 - AluSq SINE Alu -86 227 1 309 320 19 39 chr11 6905054 6905260 -141878212 - L1ME LINE L1 -306 5815 5614 602 238 56 14 chr11 6905324 6905467 -141878005 + MIR SINE MIR 44 192 -70 194 345 0 0 chr11 6906610 6906668 -141876804 + MIR SINE MIR 201 258 -4 202 298 41 135 chr11 6907073 6907489 -141875983 + L2 LINE L2 2596 2972 -342 207 233 0 0 chr11 6907500 6907543 -141875929 + L2 LINE L2 3214 3256 -16 1308 111 79 14 chr11 6907974 6908190 -141875282 + MER4E LTR ERV1 536 765 -1 318 336 47 63 chr11 6908434 6908815 -141874657 - L1ME LINE L1 -297 5867 5493 189 121 0 0 chr11 6909480 6909513 -141873959 + (T)n Simple_repeat Simple_repeat 1 33 0 1744 29 10 0 chr11 6909515 6909723 -141873749 - L1PA2 LINE L1 -4 6151 5942 1624 161 4 11 chr11 6909829 6910090 -141873382 - AluJo SINE Alu -53 259 1 353 302 158 7 chr11 6911448 6911587 -141871885 + MIR3 SINE MIR 49 208 0 348 251 99 34 chr11 6911711 6911881 -141871591 + MIR SINE MIR 16 192 -70 238 257 204 0 chr11 6911961 6912074 -141871398 - MIR SINE MIR -12 250 115 1331 74 21 11 chr11 6912975 6913164 -141870308 + AluY SINE Alu 106 296 -15 380 368 61 0 chr11 6913184 6913347 -141870125 - L1M4 LINE L1 -2610 4496 4324 231 61 0 0 chr11 6913481 6913514 -141869958 + (GA)n Simple_repeat Simple_repeat 1 33 0 292 299 49 28 chr11 6915949 6916093 -141867379 - MIR SINE MIR -72 190 44 584 95 12 0 chr11 6916322 6916406 -141867066 - PABL_B LTR ERV1 0 667 583 1098 109 0 44 chr11 6916510 6916693 -141866779 - MER4E LTR ERV1 -244 522 348 1783 113 164 80 chr11 6916767 6917140 -141866332 + MER4A LTR ERV1 261 664 0 1688 154 19 70 chr11 6917140 6917471 -141866001 - MER4E LTR ERV1 -415 351 39 2305 90 3 0 chr11 6917471 6917759 -141865713 - AluSc SINE Alu -9 300 12 1688 154 19 70 chr11 6917759 6917797 -141865675 - MER4E LTR ERV1 -727 39 1 21 0 0 0 chr11 6918286 6918307 -141865165 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 6918539 6918560 -141864912 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1104 70 0 0 chr11 6918644 6918773 -141864699 + AluY SINE Alu 1 129 -182 2835 202 97 68 chr11 6918906 6919047 -141864425 - L1M4 LINE L1 -4877 2160 2025 2321 121 0 6 chr11 6919047 6919362 -141864110 - AluSq SINE Alu 0 313 1 2835 202 97 68 chr11 6919362 6920361 -141863111 - L1M4 LINE L1 -5012 2025 978 969 274 62 22 chr11 6920636 6921037 -141862435 + L1ME4a LINE L1 5492 5908 -213 2207 97 0 17 chr11 6921146 6921458 -141862014 - AluSx SINE Alu 0 307 1 301 215 0 15 chr11 6921458 6921523 -141861949 + MLT1H1 LTR MaLR 487 550 -5 385 259 46 30 chr11 6921908 6922039 -141861433 - MER5B DNA MER1_type -11 167 35 2473 73 0 3 chr11 6922128 6922431 -141861041 - AluY SINE Alu -9 302 1 480 204 250 66 chr11 6922513 6922575 -141860897 - MIR SINE MIR -12 250 201 2106 113 10 32 chr11 6922575 6922884 -141860588 - AluSx SINE Alu -10 302 1 480 204 250 66 chr11 6922884 6923017 -141860455 - MIR SINE MIR -61 201 19 339 224 168 19 chr11 6923115 6923222 -141860250 + L2 LINE L2 3150 3272 0 181 292 42 33 chr11 6924038 6924158 -141859314 + MIR SINE MIR 44 164 -98 215 357 188 0 chr11 6924478 6924590 -141858882 - MIR SINE MIR -73 189 57 866 287 12 16 chr11 6925105 6925352 -141858120 - MIR SINE MIR -1 261 16 459 157 0 0 chr11 6925382 6925471 -141858001 + (CA)n Simple_repeat Simple_repeat 1 89 0 256 340 0 0 chr11 6926166 6926269 -141857203 + (TG)n Simple_repeat Simple_repeat 1 103 0 1045 225 113 24 chr11 6927405 6927863 -141855609 - L1MEc LINE L1 -2624 3591 3093 1401 240 94 36 chr11 6927878 6928494 -141854978 - L1MEc LINE L1 -5122 1274 623 515 223 33 0 chr11 6928490 6928611 -141854861 - L1ME LINE L1 -368 5798 5674 * 2589 133 45 63 chr11 6928611 6929101 -141854371 + L1MD1 LINE L1 5693 6173 -69 584 170 116 27 chr11 6929101 6929213 -141854259 - FLAM_A SINE Alu -11 122 1 2589 133 45 63 chr11 6929213 6929277 -141854195 + L1MD1 LINE L1 6173 6237 -5 336 294 87 49 chr11 6929287 6929424 -141854048 + L1M4 LINE L1 5109 5256 -890 1871 166 0 13 chr11 6929424 6929725 -141853747 - AluSx SINE Alu -13 299 3 336 294 87 49 chr11 6929725 6929771 -141853701 + L1M4 LINE L1 5256 5299 -847 329 271 10 52 chr11 6929783 6929879 -141853593 + L1M LINE L1 5333 5424 -2384 295 301 77 11 chr11 6930206 6930389 -141853083 - HAL1 LINE L1 -855 1652 1458 21 0 0 0 chr11 6930440 6930461 -141853011 + AT_rich Low_complexity Low_complexity 1 21 0 5979 63 20 1 chr11 6930473 6931267 -141852205 - L1PA6 LINE L1 -2 6152 5344 4282 49 0 0 chr11 6931437 6931992 -141851480 - L1PA6 LINE L1 -887 5259 4705 463 287 16 31 chr11 6932051 6932309 -141851163 - HAL1 LINE L1 -1132 1375 1122 2164 132 0 10 chr11 6932361 6932665 -141850807 - AluSx SINE Alu -11 301 1 261 0 0 0 chr11 6932695 6932724 -141850748 + (T)n Simple_repeat Simple_repeat 1 29 0 2394 80 0 10 chr11 6933008 6933310 -141850162 - AluY SINE Alu -12 299 1 2355 149 79 11 chr11 6933426 6933883 -141849589 - L1MA8 LINE L1 -2 6289 5802 1176 141 28 0 chr11 6933883 6934060 -141849412 + AluJb SINE Alu 2 183 -129 360 311 44 22 chr11 6934408 6934543 -141848929 + MIR3 SINE MIR 34 171 -37 207 217 22 0 chr11 6934870 6934916 -141848556 + MIR SINE MIR 173 219 -43 389 276 35 28 chr11 6934957 6935102 -141848370 + L2 LINE L2 2644 2789 -525 549 329 100 42 chr11 6935390 6935770 -141847702 + L1M4 LINE L1 4233 4634 -1512 212 186 34 17 chr11 6936214 6936273 -141847199 + A-rich Low_complexity Low_complexity 3 62 0 419 301 66 46 chr11 6936719 6936915 -141846557 + MIR3 SINE MIR 7 206 -2 213 315 54 95 chr11 6937029 6937324 -141846148 - L2 LINE L2 -22 3250 2968 331 269 19 46 chr11 6938784 6938892 -141844580 + MER91A DNA MER1_type 22 126 -70 247 163 61 0 chr11 6941493 6941542 -141841930 + L3 LINE CR1 1525 1576 -1 1698 160 0 42 chr11 6943147 6943435 -141840037 + AluJb SINE Alu 1 276 -36 242 203 0 29 chr11 6943441 6943510 -141839962 + GA-rich Low_complexity Low_complexity 4 70 0 1007 244 111 32 chr11 6943709 6944053 -141839419 - L2 LINE L2 -15 3298 2928 231 310 71 35 chr11 6944479 6944592 -141838880 + L3 LINE CR1 1291 1407 -170 406 302 191 41 chr11 6945701 6946218 -141837254 + L2 LINE L2 2378 2972 -342 247 401 139 22 chr11 6946336 6946752 -141836720 - L2 LINE L2 -1 3271 2807 389 284 97 37 chr11 6946767 6946901 -141836571 + HAL1 LINE L1 2 143 -2364 540 131 85 0 chr11 6946932 6947062 -141836410 - Charlie5 DNA MER1_type -27 2585 2445 214 321 98 18 chr11 6949219 6949331 -141834141 - L3 LINE CR1 -926 651 531 275 260 0 0 chr11 6949471 6949544 -141833928 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 279 253 26 148 chr11 6949582 6949811 -141833661 - L2 LINE L2 -74 3198 2998 1405 177 56 16 chr11 6950081 6950330 -141833142 + AluJo SINE Alu 1 259 -53 442 270 163 23 chr11 6951269 6951484 -141831988 + MLT1L LTR MaLR 371 615 0 210 200 0 0 chr11 6952050 6952085 -141831387 - MIR SINE MIR -63 145 111 411 208 171 20 chr11 6952330 6952479 -141830993 - MIR SINE MIR -48 214 50 669 295 47 0 chr11 6954066 6954300 -141829172 + L1ME LINE L1 5527 5771 -350 384 259 128 35 chr11 6955072 6955239 -141828233 - MER5A DNA MER1_type 0 189 1 240 35 0 0 chr11 6955343 6955372 -141828100 + (CA)n Simple_repeat Simple_repeat 2 30 0 612 221 12 81 chr11 6957301 6957473 -141825999 - MIR3 SINE MIR -39 169 10 256 344 33 25 chr11 6958518 6958640 -141824832 + L2 LINE L2 3101 3223 -49 3077 210 80 8 chr11 6958870 6959617 -141823855 + MER63C DNA MER1_type 21 821 -109 2010 117 0 7 chr11 6959621 6959902 -141823570 - AluJb SINE Alu -3 309 31 4237 64 0 9 chr11 6959902 6960452 -141823020 + PABL_A LTR ERV1 1 545 -115 646 266 117 38 chr11 6960956 6961272 -141822200 + MER102b DNA MER1_type 1 341 0 250 279 198 18 chr11 6961336 6961447 -141822025 - L2 LINE L2 -6 3266 3136 1897 202 157 4 chr11 6962120 6962580 -141820892 + MLT1G LTR MaLR 14 543 -47 2039 124 56 31 chr11 6964088 6964377 -141819095 + MLT1A1 LTR MaLR 1 302 -63 2294 87 0 10 chr11 6964377 6964666 -141818806 - AluSq SINE Alu -9 304 19 2039 124 56 31 chr11 6964666 6964732 -141818740 + MLT1A1 LTR MaLR 302 365 0 26 30 0 0 chr11 6965490 6965523 -141817949 + AT_rich Low_complexity Low_complexity 1 33 0 2519 76 3 0 chr11 6965543 6965847 -141817625 - AluSp SINE Alu -8 305 1 592 222 9 0 chr11 6966578 6966686 -141816786 - MER68 LTR ERV1 -1 561 453 1495 224 60 58 chr11 6966688 6967189 -141816283 - MER77 LTR ERV1 0 605 104 453 268 12 47 chr11 6967395 6967528 -141815944 + LTR16A1 LTR ERVL 290 382 -75 650 233 41 82 chr11 6967528 6967747 -141815725 - MER63A DNA MER1_type 0 210 1 453 268 12 47 chr11 6967747 6967819 -141815653 + LTR16A1 LTR ERVL 382 455 -2 406 299 30 12 chr11 6968072 6968236 -141815236 + HERVL LTR ERVL 3230 3396 -2258 906 232 28 13 chr11 6968718 6968989 -141814483 - MLT1H LTR MaLR -229 320 3 279 393 19 10 chr11 6969067 6969273 -141814199 + L2 LINE L2 2151 2358 -956 342 313 20 7 chr11 6970214 6970361 -141813111 - L1ME LINE L1 -350 5771 5623 327 340 115 13 chr11 6970492 6970648 -141812824 + MIR SINE MIR 1 172 -90 1218 247 53 51 chr11 6970651 6971084 -141812388 - L2 LINE L2 -1 3312 2879 2977 215 77 23 chr11 6971100 6972714 -141810758 - L1ME1 LINE L1 -135 6031 4333 3750 169 51 63 chr11 6972726 6973143 -141810329 - L1MB4 LINE L1 0 6180 5760 2052 119 0 3 chr11 6973143 6973436 -141810036 - AluSx SINE Alu -8 304 13 3750 169 51 63 chr11 6973436 6974358 -141809114 - L1MB4 LINE L1 -420 5760 4863 1829 192 3 6 chr11 6974358 6974670 -141808802 + AluJb SINE Alu 1 311 -1 3750 169 51 63 chr11 6974670 6974724 -141808748 - L1MB4 LINE L1 -1317 4863 4810 2282 125 0 0 chr11 6975007 6975319 -141808153 - AluSx SINE Alu 0 312 1 346 196 43 22 chr11 6978087 6978179 -141805293 + MER58A DNA MER1_type 42 135 0 379 318 135 6 chr11 6979734 6979904 -141803568 + MIR3 SINE MIR 15 206 -2 1200 275 108 44 chr11 6982214 6983089 -141800383 + L2 LINE L2 2303 3299 -14 185 261 43 0 chr11 6983212 6983258 -141800214 - MIR SINE MIR -60 148 101 294 219 168 66 chr11 6983272 6983409 -141800063 + MIR SINE MIR 58 208 -54 264 297 91 29 chr11 6983929 6984104 -141799368 + L3 LINE CR1 1171 1356 -221 309 36 55 0 chr11 6990003 6990058 -141793414 + (TA)n Simple_repeat Simple_repeat 1 58 0 276 266 13 0 chr11 6990794 6990873 -141792599 - MIR3 SINE MIR -52 156 77 194 261 142 52 chr11 6991592 6991726 -141791746 + MIR3 SINE MIR 48 193 -15 211 224 0 35 chr11 6993775 6993833 -141789639 + CT-rich Low_complexity Low_complexity 4 59 0 1813 155 11 14 chr11 6993952 6994236 -141789236 + AluJo SINE Alu 14 296 -16 847 217 17 23 chr11 6994547 6994722 -141788750 - MER5A DNA MER1_type -7 182 9 566 211 8 0 chr11 6996583 6996706 -141786766 + L1MA8 LINE L1 6166 6289 -2 256 260 208 19 chr11 6996767 6996921 -141786551 - L3 LINE CR1 -102 1475 1293 490 291 150 30 chr11 6996934 6997034 -141786438 - MIR SINE MIR 0 262 175 2010 106 0 72 chr11 6997034 6997355 -141786117 - AluY SINE Alu -13 298 1 490 291 150 30 chr11 6997355 6997488 -141785984 - MIR SINE MIR -87 175 1 303 327 53 7 chr11 6997502 6997710 -141785762 - L3 LINE CR1 -344 1233 964 257 303 56 0 chr11 6998055 6998144 -141785328 - MIR3 SINE MIR -33 175 82 227 267 43 60 chr11 6998511 6998627 -141784845 + MIR SINE MIR 27 140 -68 778 154 0 0 chr11 6998755 6998872 -141784600 - FRAM SINE Alu -39 137 21 288 65 78 0 chr11 6999034 6999111 -141784361 + (TA)n Simple_repeat Simple_repeat 1 83 0 2803 20 0 0 chr11 6999209 6999514 -141783958 + AluY SINE Alu 1 305 -6 587 243 76 43 chr11 6999850 6999901 -141783571 - MIR SINE MIR -12 250 202 402 205 0 0 chr11 6999901 6999979 -141783493 - MER116 DNA Mariner -2 78 1 587 243 76 43 chr11 6999979 7000112 -141783360 - MIR SINE MIR -60 202 60 23 0 0 0 chr11 7000982 7001005 -141782467 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 94 43 chr11 7001643 7001840 -141781632 - MIR SINE MIR -29 233 30 312 185 0 0 chr11 7002075 7002129 -141781343 - L2 LINE L2 -2 3270 3217 944 237 98 109 chr11 7004117 7004665 -141778807 + MLT1H LTR MaLR 8 549 0 547 253 39 52 chr11 7004765 7004919 -141778553 - MER91A DNA MER1_type -41 155 4 189 290 177 8 chr11 7005935 7006059 -141777413 - MIR3 SINE MIR -22 186 42 484 313 33 0 chr11 7006616 7006766 -141776706 - MIR SINE MIR -87 175 21 262 233 27 48 chr11 7007586 7007732 -141775740 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 223 171 0 0 chr11 7008000 7008041 -141775431 + (TG)n Simple_repeat Simple_repeat 2 42 0 322 312 101 0 chr11 7010521 7010659 -141772813 - MIR SINE MIR -21 241 90 403 244 130 0 chr11 7011050 7011165 -141772307 - MER94 DNA DNA -2 132 3 266 348 101 18 chr11 7012032 7012259 -141771213 - MIR SINE MIR -4 258 13 182 239 87 0 chr11 7012339 7012385 -141771087 + L2 LINE L2 3223 3272 0 315 154 67 67 chr11 7015700 7015804 -141767668 - L1ME4a LINE L1 -3 6118 6015 1574 79 4 35 chr11 7015864 7016091 -141767381 - AluSg/x SINE Alu -2 308 89 469 125 45 23 chr11 7016195 7016283 -141767189 + AluJ/FRAM SINE Alu 223 312 0 306 0 0 0 chr11 7016297 7016331 -141767141 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 688 236 40 5 chr11 7016331 7016521 -141766951 + L1ME1 LINE L1 3516 3715 -2431 * 3616 209 67 14 chr11 7016520 7017159 -141766313 + L1ME1 LINE L1 4434 5038 -1296 2404 92 0 16 chr11 7017159 7017475 -141765997 + AluY SINE Alu 1 311 0 3616 209 67 14 chr11 7017475 7017936 -141765536 + L1ME1 LINE L1 5038 5473 -861 2022 119 17 30 chr11 7017936 7018238 -141765234 + AluSx SINE Alu 1 298 -14 3616 209 67 14 chr11 7018238 7018787 -141764685 + L1ME1 LINE L1 5473 6332 -2 573 292 50 12 chr11 7019137 7019298 -141764174 - MIR3 SINE MIR -22 186 20 281 291 97 48 chr11 7019493 7019658 -141763814 - MIR3 SINE MIR -10 198 26 359 372 78 37 chr11 7020852 7020938 -141762534 + L2 LINE L2 1805 1886 -1428 2640 36 7 0 chr11 7020938 7021241 -141762231 - AluY SINE Alu -6 305 1 359 372 78 37 chr11 7021241 7021692 -141761780 + L2 LINE L2 1886 2364 -950 300 300 89 48 chr11 7021979 7022272 -141761200 + L2 LINE L2 2179 2483 -831 533 262 41 35 chr11 7022298 7022470 -141761002 + MLT1K LTR MaLR 69 241 -347 229 198 48 111 chr11 7022615 7022741 -141760731 + LTR67 LTR ERVL 432 549 -8 218 309 62 0 chr11 7022851 7022932 -141760540 + L2 LINE L2 2662 2747 -567 498 286 90 108 chr11 7022956 7023283 -141760189 - L2 LINE L2 -337 2977 2646 306 73 0 0 chr11 7023283 7023324 -141760148 + (CTCA)n Simple_repeat Simple_repeat 2 42 0 498 286 90 108 chr11 7023324 7023730 -141759742 - L2 LINE L2 -668 2646 2257 2095 98 4 4 chr11 7023797 7024072 -141759400 + AluSx SINE Alu 1 275 -37 342 266 65 43 chr11 7024230 7024369 -141759103 + HAL1 LINE L1 231 372 -2135 1499 147 4 25 chr11 7024371 7024616 -141758856 + AluJo SINE Alu 1 240 -72 321 87 0 0 chr11 7024682 7024728 -141758744 + AluJo SINE Alu 247 292 -10 618 299 43 9 chr11 7024869 7025080 -141758392 - MIR SINE MIR -44 218 1 605 263 81 84 chr11 7025143 7025478 -141757994 - L2 LINE L2 -809 2505 2172 983 318 84 44 chr11 7025527 7025685 -141757787 - L2 LINE L2 -2620 694 544 1748 108 43 49 chr11 7025685 7026020 -141757452 - AluY SINE Alu 0 311 1 983 318 84 44 chr11 7026020 7026206 -141757266 - L2 LINE L2 -2770 544 367 2430 95 3 0 chr11 7026206 7026512 -141756960 + AluSc SINE Alu 1 307 -2 983 318 84 44 chr11 7026512 7026785 -141756687 - L2 LINE L2 -2947 367 51 2221 123 0 3 chr11 7027018 7027319 -141756153 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 7028079 7028273 -141755199 - MIR3 SINE MIR -30 178 1 2338 86 3 17 chr11 7028524 7028825 -141754647 - AluSc SINE Alu -12 297 1 1754 223 14 6 chr11 7029843 7030206 -141753266 + MLT2D LTR ERVL 1 366 -48 331 324 89 51 chr11 7030500 7030870 -141752602 + LTR67 LTR ERVL 36 419 -138 202 167 0 0 chr11 7030875 7030905 -141752567 + MIR SINE MIR 117 146 -116 899 309 112 11 chr11 7032192 7032568 -141750904 + LTR16C LTR ERVL 78 491 0 390 194 10 51 chr11 7032742 7032840 -141750632 + MLT1K LTR MaLR 479 572 -16 855 207 66 10 chr11 7033284 7033482 -141749990 + ORSL DNA AcHobo 1 209 -66 1334 280 74 11 chr11 7034482 7034942 -141748530 + L2 LINE L2 2824 3312 -1 238 49 0 0 chr11 7035091 7035132 -141748340 + Alu SINE Alu 262 302 0 237 206 315 22 chr11 7035150 7035242 -141748230 - L2 LINE L2 -4 3309 3191 198 250 71 0 chr11 7035546 7035602 -141747870 + L2 LINE L2 2688 2747 -567 1864 197 28 23 chr11 7036174 7036564 -141746908 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr11 7037195 7037216 -141746256 + AT_rich Low_complexity Low_complexity 1 21 0 8293 40 16 0 chr11 7037216 7038943 -141744529 - L1PA5 LINE L1 -7 6147 4405 241 292 0 0 chr11 7039139 7039211 -141744261 + MIR SINE MIR 191 262 0 2194 125 3 0 chr11 7040232 7040536 -141742936 - AluSq SINE Alu -8 305 1 4813 57 24 3 chr11 7041760 7042339 -141741133 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr11 7042848 7042870 -141740602 + (T)n Simple_repeat Simple_repeat 1 22 0 255 304 38 25 chr11 7042899 7042978 -141740494 + MIR SINE MIR 27 106 -102 1583 237 37 37 chr11 7043579 7044010 -141739462 + MLT1J1 LTR MaLR 16 446 0 22241 32 2 0 chr11 7044022 7046665 -141736807 + L1P LINE L1 1770 4418 -1728 22 0 0 0 chr11 7047067 7047089 -141736383 + AT_rich Low_complexity Low_complexity 1 22 0 6314 125 8 11 chr11 7047485 7048851 -141734621 - L1PA15 LINE L1 -4 6161 4795 3378 210 82 19 chr11 7049246 7050126 -141733346 - L1ME1 LINE L1 -17 6149 5183 1982 146 0 3 chr11 7050126 7050427 -141733045 - AluJb SINE Alu -12 300 1 3378 210 82 19 chr11 7050427 7050651 -141732821 - L1ME1 LINE L1 -983 5183 4975 301 262 37 19 chr11 7050756 7050863 -141732609 - HAL1b LINE L1 -49 1299 1191 699 83 4 78 chr11 7050967 7051234 -141732238 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 7051299 7051320 -141732152 + AT_rich Low_complexity Low_complexity 1 21 0 373 283 117 33 chr11 7052101 7052605 -141730867 - L1ME1 LINE L1 -1227 4919 4368 405 293 40 30 chr11 7052710 7052908 -141730564 - L1ME1 LINE L1 -1924 4222 4023 313 344 83 6 chr11 7052931 7053088 -141730384 - L1ME1 LINE L1 -2275 3871 3703 931 133 7 0 chr11 7053091 7053226 -141730246 + AluJb SINE Alu 6 141 -171 43 20 0 0 chr11 7053248 7053298 -141730174 + AT_rich Low_complexity Low_complexity 1 50 0 232 222 0 28 chr11 7053342 7053414 -141730058 + (TA)n Simple_repeat Simple_repeat 2 71 0 1741 99 4 0 chr11 7053503 7053736 -141729736 - L1PA11 LINE L1 -2 6172 5939 26 0 0 0 chr11 7054021 7054047 -141729425 + AT_rich Low_complexity Low_complexity 1 26 0 489 195 0 0 chr11 7054113 7054195 -141729277 + Tigger4(Zombi) DNA MER2_type 1 82 -2649 3728 94 16 0 chr11 7054200 7054709 -141728763 + Tigger4(Zombi) DNA MER2_type 2212 2728 -3 28 0 0 0 chr11 7054777 7054805 -141728667 + AT_rich Low_complexity Low_complexity 1 28 0 684 228 115 48 chr11 7054927 7055264 -141728208 + MLT1I LTR MaLR 50 435 -11 242 250 17 0 chr11 7055282 7055342 -141728130 - L1ME1 LINE L1 -3129 3017 2957 300 204 0 112 chr11 7055374 7055472 -141728000 - L1MC4 LINE L1 -1339 6703 6617 * 301 202 0 101 chr11 7055384 7055483 -141727989 + L1MC4 LINE L1 6614 6702 -1340 218 182 39 13 chr11 7055490 7055567 -141727905 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 159 47 29 chr11 7055591 7055761 -141727711 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 455 33 16 0 chr11 7055945 7056006 -141727466 + (TG)n Simple_repeat Simple_repeat 2 63 0 305 219 47 0 chr11 7057045 7057109 -141726363 + MIR3 SINE MIR 112 178 -30 268 241 23 69 chr11 7057163 7057225 -141726247 + MIR3 SINE MIR 111 169 -39 2429 135 25 3 chr11 7057225 7057581 -141725891 + THE1B LTR MaLR 1 364 0 268 241 23 69 chr11 7057581 7057605 -141725867 + MIR3 SINE MIR 169 193 -15 216 182 0 0 chr11 7057655 7057699 -141725773 + (CA)n Simple_repeat Simple_repeat 2 45 0 320 345 16 51 chr11 7058235 7058490 -141724982 + L1ME4a LINE L1 3733 3978 -2168 469 285 92 88 chr11 7058520 7058770 -141724702 + L1ME4a LINE L1 4114 4362 -1784 2430 71 0 19 chr11 7058770 7059079 -141724393 + AluY SINE Alu 1 303 -8 469 285 92 88 chr11 7059079 7059745 -141723727 + L1ME4a LINE L1 4362 5033 -1113 877 280 106 16 chr11 7059899 7060285 -141723187 + L1ME4a LINE L1 5495 5915 -206 2813 229 52 22 chr11 7060958 7061723 -141721749 + L1ME3A LINE L1 5383 6170 0 452 229 34 8 chr11 7061721 7061839 -141721633 + L1ME4a LINE L1 5977 6097 -24 * 22 35 0 0 chr11 7061865 7061894 -141721578 + AT_rich Low_complexity Low_complexity 1 29 0 366 85 0 0 chr11 7061939 7061998 -141721474 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 527 276 30 0 chr11 7062107 7062241 -141721231 - MER5A DNA MER1_type 0 189 52 350 315 117 19 chr11 7062457 7062670 -141720802 + MIR SINE MIR 3 236 -26 1594 201 0 28 chr11 7062855 7063174 -141720298 + AluJo SINE Alu 1 310 -2 201 74 0 0 chr11 7063228 7063255 -141720217 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 796 247 38 0 chr11 7063278 7063464 -141720008 + MIR SINE MIR 70 262 0 450 218 53 53 chr11 7063462 7063595 -141719877 - L2 LINE L2 -2 3311 3179 * 592 337 128 36 chr11 7064062 7064524 -141718948 - L2 LINE L2 0 3272 2854 1496 129 44 22 chr11 7064524 7064749 -141718723 - MER30 DNA MER1_type 0 230 1 592 337 128 36 chr11 7064749 7065193 -141718279 - L2 LINE L2 -418 2854 2286 2017 262 100 20 chr11 7065204 7065831 -141717641 + L1MEc LINE L1 22 726 -5670 1384 127 103 0 chr11 7065831 7066044 -141717428 - MER46A DNA MER2_type -1 235 1 2017 262 100 20 chr11 7066044 7066205 -141717267 + L1MEc LINE L1 726 873 -5523 3056 224 49 60 chr11 7066221 7067031 -141716441 + MER21B LTR ERV1 12 812 -51 1012 276 116 10 chr11 7067051 7067570 -141715902 + L1MEc LINE L1 894 1467 -4929 5450 171 58 13 chr11 7067613 7069582 -141713890 + L1MB8 LINE L1 4109 6165 -13 384 271 146 7 chr11 7070548 7070699 -141712773 + MIR3 SINE MIR 18 189 -19 227 329 163 45 chr11 7073279 7073525 -141709947 - L3 LINE CR1 -9 1568 1294 190 313 94 10 chr11 7073544 7073640 -141709832 - MIR SINE MIR -51 211 108 189 0 0 0 chr11 7073849 7073870 -141709602 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 445 241 135 0 chr11 7076370 7076503 -141706969 - MER96B DNA MER1_type? -2 415 265 744 215 41 6 chr11 7076559 7076731 -141706741 - MER96B DNA MER1_type? -239 178 1 231 232 36 0 chr11 7077008 7077064 -141706408 + G-rich Low_complexity Low_complexity 5 62 0 197 318 11 57 chr11 7079364 7079452 -141704020 - L3 LINE CR1 -257 1320 1237 * 207 338 48 48 chr11 7079428 7079573 -141703899 - L2 LINE L2 -6 3266 3122 1385 189 18 49 chr11 7079701 7079986 -141703486 + AluJo SINE Alu 3 278 -34 195 69 0 0 chr11 7079990 7080019 -141703453 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4745 167 48 57 chr11 7080068 7080978 -141702494 - L1MB8 LINE L1 0 6178 5261 1818 176 0 19 chr11 7080978 7081290 -141702182 - AluJo SINE Alu -5 307 2 4745 167 48 57 chr11 7081290 7082683 -141700789 - L1MB8 LINE L1 -917 5261 3804 447 19 0 0 chr11 7082714 7082766 -141700706 + (TG)n Simple_repeat Simple_repeat 2 53 0 2312 122 0 0 chr11 7082839 7083151 -141700321 + AluSx SINE Alu 1 312 0 411 306 95 12 chr11 7083183 7083425 -141700047 - L2 LINE L2 -459 2855 2594 354 287 70 60 chr11 7083457 7083757 -141699715 - MLT1K LTR MaLR -6 582 280 433 149 0 0 chr11 7083974 7084041 -141699431 - AluJ/FLAM SINE Alu -223 89 23 3424 57 94 0 chr11 7084444 7084869 -141698603 + MER4C LTR ERV1 1 465 0 371 327 148 30 chr11 7084892 7085391 -141698081 - L3 LINE CR1 -320 1257 700 1276 182 36 61 chr11 7085391 7085720 -141697752 - L1MC5 LINE L1 -30 7931 7611 1895 126 0 11 chr11 7085815 7086078 -141697394 - AluSq SINE Alu -53 260 1 1164 246 98 37 chr11 7086236 7086756 -141696716 + L2 LINE L2 2632 3213 -100 2410 88 3 0 chr11 7086756 7087063 -141696409 + AluSg SINE Alu 1 308 -2 1164 246 98 37 chr11 7087063 7087170 -141696302 + L2 LINE L2 3213 3312 -1 319 243 81 0 chr11 7087264 7087375 -141696097 + L1ME4a LINE L1 5764 5883 -238 1692 41 15 0 chr11 7087412 7087608 -141695864 + L1PA5 LINE L1 5956 6154 0 339 248 128 8 chr11 7087617 7087734 -141695738 + L1ME4a LINE L1 5990 6120 -1 2118 122 26 0 chr11 7088479 7088783 -141694689 + AluSx SINE Alu 1 312 0 338 183 0 12 chr11 7089309 7089391 -141694081 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3530 174 17 2 chr11 7089949 7090548 -141692924 - MER90 LTR ERV1 -6 608 1 388 292 124 52 chr11 7091006 7091239 -141692233 - MIR SINE MIR -6 256 7 228 284 0 54 chr11 7091276 7091350 -141692122 - L2 LINE L2 -559 2755 2686 2361 94 7 0 chr11 7091920 7092219 -141691253 - AluSx SINE Alu -11 301 1 1667 168 11 11 chr11 7092272 7092552 -141690920 - AluJo SINE Alu -7 305 26 492 308 0 0 chr11 7092800 7092946 -141690526 + L1ME3A LINE L1 5713 5858 -312 520 123 0 105 chr11 7093015 7093129 -141690343 - L1MB3 LINE L1 -18 6165 6064 248 318 182 20 chr11 7093628 7094024 -141689448 - L2 LINE L2 -862 2452 1993 290 311 38 57 chr11 7094175 7094281 -141689191 + L2 LINE L2 3155 3258 -14 311 274 77 17 chr11 7094584 7094701 -141688771 + L3 LINE CR1 1358 1481 -96 4630 158 38 42 chr11 7094754 7095581 -141687891 - L1MB8 LINE L1 -6 6172 5343 2203 113 0 10 chr11 7095581 7095883 -141687589 - AluSx SINE Alu -13 299 1 4630 158 38 42 chr11 7095883 7095915 -141687557 - L1MB8 LINE L1 -835 5343 5312 2708 26 3 3 chr11 7095915 7096224 -141687248 - AluY SINE Alu -2 309 1 4630 158 38 42 chr11 7096224 7096629 -141686843 - L1MB8 LINE L1 -866 5312 4897 201 296 0 0 chr11 7096630 7096674 -141686798 + L3 LINE CR1 1531 1574 -3 4162 145 90 9 chr11 7097221 7097885 -141685587 - MER72 LTR ERV1 0 722 5 1498 155 7 58 chr11 7098304 7098614 -141684858 - AluY SINE Alu -1 310 17 1152 242 37 0 chr11 7148624 7148897 -141634575 - L1ME LINE L1 -362 5808 5526 * 5111 138 9 1 chr11 7148896 7149692 -141633780 + L1PA16 LINE L1 5364 6165 -1 261 180 0 0 chr11 7149691 7149741 -141633731 - L1ME LINE L1 -625 5539 5487 * 1241 238 53 3 chr11 7149866 7150169 -141633303 - L1ME2 LINE L1 -268 6691 6374 835 191 0 7 chr11 7150181 7150328 -141633144 + FRAM SINE Alu 6 151 -25 271 191 0 0 chr11 7150341 7150388 -141633084 - L1ME2 LINE L1 -595 6364 6318 1627 214 28 87 chr11 7150427 7150993 -141632479 + MER34 LTR ERV1 10 542 0 1498 134 46 21 chr11 7151773 7152056 -141631416 - MER4-int LTR ERV1 -1455 5143 4854 * 8300 112 53 42 chr11 7152048 7152606 -141630866 + LTR8A-int LTR ERV1 5120 5670 -928 3877 164 51 19 chr11 7152606 7153308 -141630164 + LTR8A LTR ERV1 1 725 -2 8300 112 53 42 chr11 7153308 7154210 -141629262 + LTR8A-int LTR ERV1 5670 6596 -2 3776 114 23 46 chr11 7154218 7154832 -141628640 + MER4A LTR ERV1 1 600 0 440 342 55 29 chr11 7155927 7156415 -141627057 + L2 LINE L2 1334 1834 -1480 697 245 185 79 chr11 7156427 7157071 -141626401 - HAL1 LINE L1 0 2507 1780 2196 145 0 0 chr11 7157071 7157382 -141626090 - AluSx SINE Alu -1 311 1 697 245 185 79 chr11 7157382 7157446 -141626026 - HAL1 LINE L1 -727 1780 1724 2035 142 0 0 chr11 7159068 7159371 -141624101 + AluSx SINE Alu 1 303 -9 221 215 0 13 chr11 7159436 7159515 -141623957 + GA-rich Low_complexity Low_complexity 1 78 0 2640 42 0 3 chr11 7160754 7161061 -141622411 + AluY SINE Alu 1 306 -5 2536 174 22 0 chr11 7161071 7161484 -141621988 - MSTB LTR MaLR -4 422 1 243 291 0 23 chr11 7161729 7161815 -141621657 + (CA)n Simple_repeat Simple_repeat 1 84 0 6078 168 40 27 chr11 7163627 7164479 -141618993 + L1MC2 LINE L1 4407 5247 -1097 2011 92 0 0 chr11 7164479 7164730 -141618742 + AluSc SINE Alu 40 290 -19 6078 168 40 27 chr11 7164730 7165693 -141617779 + L1MC2 LINE L1 5247 6261 -83 1252 147 20 33 chr11 7165693 7165938 -141617534 - L1MA10 LINE L1 -7 6327 6086 6078 168 40 27 chr11 7165938 7166002 -141617470 + L1MC2 LINE L1 6261 6323 -21 315 80 0 0 chr11 7165993 7166043 -141617429 + L1MC3 LINE L1 7575 7624 -161 * 1752 266 103 22 chr11 7166075 7167108 -141616364 - L1ME2 LINE L1 -877 6064 4949 2309 93 0 3 chr11 7167170 7167461 -141616011 - AluSq SINE Alu -21 292 3 511 263 158 7 chr11 7168178 7168330 -141615142 + MER5A DNA MER1_type 9 183 -6 2606 59 0 0 chr11 7168362 7168667 -141614805 - AluY SINE Alu -6 305 1 443 333 31 26 chr11 7168704 7168896 -141614576 - L1ME2 LINE L1 -5408 1015 823 41 72 0 0 chr11 7169044 7169127 -141614345 + AT_rich Low_complexity Low_complexity 1 83 0 417 117 130 0 chr11 7169127 7169204 -141614268 - L1MB2 LINE L1 -7 6164 6078 3147 198 40 60 chr11 7169211 7169270 -141614202 - L1MC4a LINE L1 0 7808 7749 761 227 0 0 chr11 7169270 7169402 -141614070 + FLAM_A SINE Alu 2 133 0 3147 198 40 60 chr11 7169402 7170146 -141613326 - L1MC4a LINE L1 -59 7749 7021 867 252 31 24 chr11 7170152 7170406 -141613066 - L1ME3A LINE L1 -5 6165 5910 260 277 264 34 chr11 7170635 7170783 -141612689 - L1ME3A LINE L1 -2073 5735 5554 184 333 46 11 chr11 7171918 7172005 -141611467 - MIR3 SINE MIR -5 203 114 542 264 149 27 chr11 7172187 7172532 -141610940 - LTR16A LTR ERVL -4 446 21 264 75 0 0 chr11 7172933 7172973 -141610499 - L1MA9 LINE L1 -3 6309 6270 300 269 239 13 chr11 7172974 7173208 -141610264 + L2 LINE L2 2275 2561 -753 26 0 0 0 chr11 7173770 7173796 -141609676 + AT_rich Low_complexity Low_complexity 1 26 0 10047 167 15 98 chr11 7173802 7176984 -141606488 + L1M2a LINE L1 6 2930 -4238 277 326 30 52 chr11 7178015 7178248 -141605224 + MLT1K LTR MaLR 316 543 -45 261 243 68 14 chr11 7179220 7179294 -141604178 - MIR SINE MIR -78 130 53 197 273 189 35 chr11 7180553 7180696 -141602776 - MIR3 SINE MIR -18 190 26 413 209 51 10 chr11 7180696 7180851 -141602621 - LTR36 LTR ERV1 -1 610 395 256 287 34 72 chr11 7182216 7182333 -141601139 - L1MC/D LINE L1 -1972 5836 5716 2350 90 10 0 chr11 7182333 7182633 -141600839 - AluSp SINE Alu -10 303 1 256 287 34 72 chr11 7182633 7182808 -141600664 - L1MC/D LINE L1 -2092 5716 5555 665 155 14 27 chr11 7183159 7183307 -141600165 + MER4C LTR ERV1 1 146 -319 327 290 25 49 chr11 7183727 7183889 -141599583 - HERVL LTR ERVL -1460 4194 4037 742 321 36 24 chr11 7184261 7184597 -141598875 - HERVL LTR ERVL -4335 661 322 1969 178 23 25 chr11 7184631 7185024 -141598448 - MSTB1 LTR MaLR 0 432 41 6606 68 0 0 chr11 7185024 7186054 -141597418 - L1PA5 LINE L1 -1 6153 5101 10090 81 9 1 chr11 7186054 7187492 -141595980 + L1PA5 LINE L1 3651 5100 -1046 30 0 0 0 chr11 7187701 7187731 -141595741 + AT_rich Low_complexity Low_complexity 1 30 0 325 306 47 80 chr11 7187849 7188124 -141595348 - L1M4 LINE L1 -3366 2780 2515 254 259 63 28 chr11 7188200 7188343 -141595129 - L1ME3A LINE L1 0 6170 6023 364 264 47 39 chr11 7190538 7190667 -141592805 - L2 LINE L2 0 3313 3184 291 114 0 0 chr11 7190670 7190714 -141592758 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 173 53 0 chr11 7190727 7190802 -141592670 + (TA)n Simple_repeat Simple_repeat 2 80 0 363 167 0 0 chr11 7190884 7190950 -141592522 + (TA)n Simple_repeat Simple_repeat 1 66 0 477 331 94 20 chr11 7193081 7193380 -141590092 - L1ME3A LINE L1 -253 5868 5548 2525 178 9 38 chr11 7194277 7194829 -141588643 - LTR27 LTR ERV1 -98 538 3 441 289 41 84 chr11 7195661 7196077 -141587395 + MLT1J LTR MaLR 109 506 -5 24 0 0 0 chr11 7196087 7196111 -141587361 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 7196235 7196259 -141587213 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 7196324 7196347 -141587125 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 7196949 7196972 -141586500 + AT_rich Low_complexity Low_complexity 1 23 0 22952 35 0 0 chr11 7196974 7200551 -141582921 + L1PA2 LINE L1 2572 6154 -1 334 267 9 0 chr11 7200616 7200721 -141582751 - L1ME LINE L1 -461 5660 5555 32 91 0 0 chr11 7200846 7200934 -141582538 + AT_rich Low_complexity Low_complexity 1 88 0 1789 155 3 32 chr11 7201377 7201687 -141581785 + AluJb SINE Alu 1 301 -11 4747 142 55 16 chr11 7201715 7202582 -141580890 - MER4D LTR ERV1 0 903 3 606 215 35 14 chr11 7202712 7202856 -141580616 + MER93b LTR ERV1 1 147 -226 3270 59 25 7 chr11 7202908 7203348 -141580124 + LTR7 LTR ERV1 1 448 -2 18732 99 69 14 chr11 7203350 7206468 -141577004 + HERVH LTR ERV1 1 3290 -4423 3084 124 8 6 chr11 7206458 7206959 -141576513 + HERVH LTR ERV1 3492 3993 -3720 * 4121 139 1 3 chr11 7206961 7207624 -141575848 + HERVH LTR ERV1 4488 5149 -2564 1325 124 18 9 chr11 7207625 7207843 -141575629 + HERVH LTR ERV1 5600 5819 -1894 2393 75 48 3 chr11 7207843 7208216 -141575256 + HERVH LTR ERV1 7324 7713 0 3480 58 0 7 chr11 7208216 7208667 -141574805 + LTR7 LTR ERV1 1 448 -2 453 215 15 15 chr11 7208667 7208797 -141574675 + MER93b LTR ERV1 244 373 0 770 198 80 0 chr11 7209334 7209496 -141573976 - MER5A DNA MER1_type -2 187 13 312 192 0 90 chr11 7209539 7209617 -141573855 + MIR SINE MIR 183 253 -9 486 136 62 0 chr11 7210056 7210137 -141573335 + LTR54B LTR ERV1 1 86 -412 3145 121 0 0 chr11 7210137 7210615 -141572857 + MER41B LTR ERV1 1 478 -157 1264 188 88 40 chr11 7210612 7211181 -141572291 - LTR48B LTR ERV1 -21 614 1 * 324 192 0 0 chr11 7211181 7211252 -141572220 + MER57A LTR ERV1 331 401 -2 2141 129 7 0 chr11 7211334 7211644 -141571828 + AluSq SINE Alu 1 312 -1 2401 130 35 21 chr11 7212129 7212560 -141570912 - LTR23 LTR ERV1 0 437 1 5328 164 31 22 chr11 7212657 7214043 -141569429 - LTR23-int LTR ERV1 -101 5699 4415 2887 43 13 5 chr11 7214210 7214586 -141568886 + LTR10C LTR ERV1 1 379 -212 2133 143 35 20 chr11 7214589 7214995 -141568477 + LTR3 LTR ERVK 5 416 -16 23955 132 20 13 chr11 7215057 7219311 -141564161 + HERVK3 LTR ERVK 2 4226 -1719 1506 130 41 0 chr11 7219311 7219557 -141563915 + L1PA15 LINE L1 5910 6165 0 23955 132 20 13 chr11 7219557 7219579 -141563893 + HERVK3 LTR ERVK 4226 4246 -1699 216 0 0 0 chr11 7219579 7219603 -141563869 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23955 132 20 13 chr11 7219603 7220292 -141563180 + HERVK3 LTR ERVK 4246 5238 -707 2311 84 0 3 chr11 7220292 7220588 -141562884 - AluY SINE Alu -16 295 1 23955 132 20 13 chr11 7220588 7220957 -141562515 + HERVK3 LTR ERVK 5238 5603 -342 653 106 0 0 chr11 7220953 7221047 -141562425 + HERVK3 LTR ERVK 7150 7243 0 * 2137 165 14 17 chr11 7221051 7221464 -141562008 + LTR3 LTR ERVK 5 416 -16 1688 65 9 0 chr11 7221486 7221703 -141561769 + LTR10C LTR ERV1 373 591 0 1189 175 37 20 chr11 7221742 7221988 -141561484 + MLT1B LTR MaLR 3 252 -138 521 195 65 0 chr11 7221983 7222106 -141561366 + LTR23 LTR ERV1 11 141 -296 * 2500 72 0 3 chr11 7222200 7222505 -141560967 - AluY SINE Alu -7 304 1 668 209 36 0 chr11 7223147 7223343 -141560129 - L1ME3A LINE L1 -219 5951 5749 799 114 15 0 chr11 7223438 7223569 -141559903 + LTR23 LTR ERV1 167 299 -138 749 189 0 0 chr11 7223577 7223704 -141559768 + FLAM_C SINE Alu 2 128 -5 614 196 0 29 chr11 7223721 7223859 -141559613 + LTR23 LTR ERV1 293 426 -11 632 193 21 21 chr11 7223965 7224105 -141559367 + LTR23 LTR ERV1 298 437 0 793 161 35 0 chr11 7224105 7224248 -141559224 + MLT1B LTR MaLR 240 387 -3 1845 171 34 0 chr11 7224410 7224703 -141558769 - AluJo SINE Alu -9 303 1 1019 189 137 107 chr11 7224962 7225458 -141558014 + MER67D LTR ERV1 1 511 -3 681 224 63 40 chr11 7225510 7225733 -141557739 + MER110A LTR ERV1 17 244 -224 261 318 56 19 chr11 7226060 7226167 -141557305 - MLT-int LTR MaLR -1219 516 406 345 47 0 0 chr11 7226503 7226546 -141556926 + (TG)n Simple_repeat Simple_repeat 2 44 0 476 280 109 71 chr11 7226628 7227237 -141556235 - L2 LINE L2 -5 3308 2653 861 125 0 0 chr11 7227762 7227882 -141555590 + FLAM_C SINE Alu 6 125 -18 439 282 213 23 chr11 7227882 7228098 -141555374 - MIR SINE MIR -5 257 1 1911 194 94 2 chr11 7228924 7229393 -141554079 + Charlie1b DNA MER1_type 6 517 -6 504 276 115 21 chr11 7230604 7230820 -141552652 - MIR SINE MIR -4 258 30 320 351 98 65 chr11 7230863 7231056 -141552416 - L2 LINE L2 -5 3267 3057 470 46 15 0 chr11 7231056 7231121 -141552351 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 320 351 98 65 chr11 7231121 7231252 -141552220 - L2 LINE L2 -215 3057 2932 460 86 57 0 chr11 7231353 7231423 -141552049 + U6 snRNA snRNA 1 74 -33 354 356 86 29 chr11 7231682 7231960 -141551512 - L2 LINE L2 -565 2749 2456 24 100 0 0 chr11 7232083 7232163 -141551309 + AT_rich Low_complexity Low_complexity 1 80 0 2277 128 0 0 chr11 7232213 7232525 -141550947 + AluSx SINE Alu 1 312 0 29 70 0 0 chr11 7232697 7232754 -141550718 + AT_rich Low_complexity Low_complexity 1 57 0 2032 167 0 0 chr11 7232805 7233117 -141550355 + AluSx SINE Alu 1 312 0 1562 109 0 0 chr11 7233395 7233605 -141549867 - AluY SINE Alu 0 311 102 453 331 61 32 chr11 7233609 7234137 -141549335 - HAL1 LINE L1 -823 1684 1142 1755 154 37 20 chr11 7234387 7234686 -141548786 - AluJb SINE Alu -5 307 4 22 0 0 0 chr11 7234852 7234874 -141548598 + AT_rich Low_complexity Low_complexity 1 22 0 518 318 92 32 chr11 7235611 7236196 -141547276 - L1M4 LINE L1 -2846 3300 2681 180 158 0 0 chr11 7236219 7236257 -141547215 + (CA)n Simple_repeat Simple_repeat 1 38 0 3876 138 150 118 chr11 7236539 7237771 -141545701 + MER52C LTR ERV1 8 1278 0 750 274 82 50 chr11 7238288 7238704 -141544768 - LTR33 LTR ERVL -4 517 89 218 105 26 0 chr11 7238704 7238742 -141544730 + (TG)n Simple_repeat Simple_repeat 1 39 0 1594 168 14 25 chr11 7239117 7239431 -141544041 - AluJo SINE Alu 0 311 1 549 293 134 41 chr11 7239842 7240485 -141542987 - L1ME4a LINE L1 -46 6075 5376 182 89 54 18 chr11 7240528 7240584 -141542888 + (TA)n Simple_repeat Simple_repeat 2 59 0 308 301 78 39 chr11 7240842 7241048 -141542424 - L1ME4a LINE L1 -1164 4982 4769 2729 125 14 14 chr11 7241877 7242301 -141541171 + MSTA LTR MaLR 4 427 -1 249 102 82 0 chr11 7243153 7243202 -141540270 + L1MB8 LINE L1 5890 5942 -236 * 1865 165 31 21 chr11 7243199 7243618 -141539854 - L1MB7 LINE L1 -203 6792 6370 * 2581 213 48 4 chr11 7243608 7244340 -141539132 - L1MB7 LINE L1 -3152 3805 3042 705 152 10 76 chr11 7244380 7244578 -141538894 + L1MB7 LINE L1 5267 5451 -733 1078 167 19 0 chr11 7244607 7244823 -141538649 + L1MB7 LINE L1 5648 5867 -317 503 256 5 46 chr11 7244840 7245059 -141538413 - L1MB7 LINE L1 -3897 3062 2853 1754 249 54 33 chr11 7245059 7245574 -141537898 - L1MB7 LINE L1 -6333 526 1 * 1982 173 32 42 chr11 7245559 7246108 -141537364 - L1M4 LINE L1 -733 5451 4902 1379 285 106 29 chr11 7246354 7247427 -141536045 - HAL1 LINE L1 -1 2506 1351 238 197 98 0 chr11 7247740 7247801 -141535671 + L1ME LINE L1 5581 5647 -474 250 169 31 0 chr11 7248283 7248348 -141535124 + (TA)n Simple_repeat Simple_repeat 2 68 0 305 317 48 27 chr11 7248938 7249124 -141534348 - L1 LINE L1 -2334 3812 3623 2573 70 0 3 chr11 7250245 7250557 -141532915 + AluY SINE Alu 1 311 0 426 337 75 33 chr11 7250707 7251039 -141532433 + HAL1 LINE L1 1108 1453 -1054 2049 151 0 0 chr11 7252111 7252410 -141531062 - AluSx SINE Alu -13 299 1 755 157 8 0 chr11 7252616 7252737 -141530735 + AluJ SINE Alu 1 122 -180 1474 74 0 16 chr11 7252875 7253064 -141530408 - AluY SINE Alu -125 186 1 990 163 52 0 chr11 7253074 7253227 -141530245 + AluJ SINE Alu 130 290 -22 2251 89 10 3 chr11 7253571 7253874 -141529598 + AluSc SINE Alu 1 305 -4 386 358 72 21 chr11 7253883 7254162 -141529310 + L2 LINE L2 2564 2856 -458 40613 35 21 2 chr11 7254176 7260212 -141523260 - L1PA2 LINE L1 0 6155 1 199 258 0 45 chr11 7260261 7260327 -141523145 + L2 LINE L2 2911 2973 -340 21 57 0 0 chr11 7260713 7260748 -141522724 + AT_rich Low_complexity Low_complexity 1 35 0 2732 46 6 6 chr11 7260924 7261272 -141522200 - L1PA8 LINE L1 -7 6165 5818 2315 54 6 9 chr11 7261272 7261587 -141521885 + L1P3 LINE L1 5402 5715 -457 260 157 100 14 chr11 7262495 7262565 -141520907 - L1MA9 LINE L1 -22 6290 6215 436 333 59 34 chr11 7262664 7262868 -141520604 + MIR SINE MIR 44 252 -10 272 274 147 10 chr11 7263171 7263273 -141520199 - MIR3 SINE MIR -90 118 3 211 237 68 0 chr11 7263358 7263417 -141520055 - L2 LINE L2 0 3272 3210 518 305 147 13 chr11 7263896 7264371 -141519101 - L1ME4a LINE L1 -253 5868 5330 25 65 0 0 chr11 7264441 7264487 -141518985 + AT_rich Low_complexity Low_complexity 1 46 0 228 163 0 0 chr11 7265119 7265162 -141518310 + GA-rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr11 7265262 7265286 -141518186 + (GA)n Simple_repeat Simple_repeat 1 24 0 257 301 96 0 chr11 7266329 7266412 -141517060 - MIR SINE MIR -88 174 84 33 25 0 0 chr11 7267633 7267673 -141515799 + AT_rich Low_complexity Low_complexity 1 40 0 335 280 51 34 chr11 7269632 7269750 -141513722 - L2 LINE L2 -4 3268 3149 2299 95 13 0 chr11 7270293 7270599 -141512873 + AluSg SINE Alu 1 310 0 413 391 66 0 chr11 7273124 7273321 -141510151 - L2 LINE L2 -2 3270 3061 1788 58 4 0 chr11 7273648 7273874 -141509598 + L1PA12 LINE L1 5938 6164 -4 449 271 87 64 chr11 7273921 7274055 -141509417 - L1MC/D LINE L1 -747 5399 5269 2026 130 0 35 chr11 7274055 7274371 -141509101 + AluSc SINE Alu 1 305 -4 449 271 87 64 chr11 7274371 7274885 -141508587 - L1MC/D LINE L1 -877 5269 5120 24 0 0 0 chr11 7274925 7274949 -141508523 + AT_rich Low_complexity Low_complexity 1 24 0 2179 141 20 0 chr11 7275051 7275392 -141508080 - MER7A DNA MER2_type 0 346 1 409 305 65 45 chr11 7275621 7276237 -141507235 - L1MC/D LINE L1 -1457 4689 4062 254 293 40 30 chr11 7276264 7276363 -141507109 - L2 LINE L2 -305 2967 2868 886 269 63 12 chr11 7276375 7276758 -141506714 - MER115 DNA AcHobo 0 693 238 2753 173 26 116 chr11 7276777 7277151 -141506321 - L1PA14 LINE L1 -26 6135 5864 7079 47 27 0 chr11 7277151 7278295 -141505177 - L1PA6 LINE L1 -4 6150 4984 2753 173 26 116 chr11 7278295 7278688 -141504784 - L1PA14 LINE L1 -297 5864 5437 490 114 13 0 chr11 7278686 7278765 -141504707 + L1 LINE L1 4740 4819 -1327 * 4577 154 29 25 chr11 7278766 7280045 -141503427 + L1PA16 LINE L1 4868 6154 -12 456 245 35 14 chr11 7280120 7280263 -141503209 + L1M4 LINE L1 2382 2527 -3619 547 226 132 0 chr11 7280310 7280500 -141502972 + L1ME3A LINE L1 5736 5950 -220 786 300 45 16 chr11 7281335 7281582 -141501890 + LTR16A LTR ERVL 179 432 -18 * 1265 214 33 63 chr11 7281581 7281775 -141501697 - MLT1A2 LTR MaLR -20 354 175 363 23 0 0 chr11 7281775 7281819 -141501653 + (GA)n Simple_repeat Simple_repeat 1 44 0 1265 214 33 63 chr11 7281819 7281989 -141501483 - MLT1A2 LTR MaLR -199 175 1 1468 304 55 16 chr11 7282008 7282573 -141500899 + HERV16 LTR ERVL 38 624 -4372 1535 303 35 0 chr11 7282802 7283258 -141500214 + HERV16 LTR ERVL 927 1398 -3598 2072 269 87 56 chr11 7283287 7284220 -141499252 + HERV16 LTR ERVL 1613 2574 -2422 560 121 30 0 chr11 7284232 7284364 -141499108 + (TA)n Simple_repeat Simple_repeat 1 136 0 2273 101 0 0 chr11 7284729 7285026 -141498446 + AluSg SINE Alu 1 297 -13 279 316 44 53 chr11 7285038 7285152 -141498320 + MIR SINE MIR 17 129 -133 210 204 20 0 chr11 7285190 7285239 -141498233 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 239 34 29 chr11 7285314 7285519 -141497953 + L2 LINE L2 3108 3313 0 705 249 29 0 chr11 7285807 7285980 -141497492 + MER5B DNA MER1_type 1 178 0 344 182 0 0 chr11 7285985 7286040 -141497432 - MER5A DNA MER1_type -2 187 133 205 240 13 27 chr11 7286442 7286517 -141496955 + A-rich Low_complexity Low_complexity 2 75 0 430 310 60 8 chr11 7286731 7287036 -141496436 - L1P2 LINE L1 -319 5835 5509 360 216 74 99 chr11 7287199 7287361 -141496111 + L2 LINE L2 3156 3313 0 1869 195 82 47 chr11 7287422 7287910 -141495562 - MLT1D LTR MaLR 0 505 1 1492 232 40 96 chr11 7287910 7288410 -141495062 - MLT1D-int LTR MaLR 0 1371 900 528 283 29 0 chr11 7288553 7288691 -141494781 - MLT1D-int LTR MaLR -484 887 746 957 225 22 5 chr11 7288701 7288923 -141494549 - MLT1D-int LTR MaLR -855 516 291 674 251 9 48 chr11 7288926 7289020 -141494452 + L1M4 LINE L1 2192 2288 -3858 2219 119 0 10 chr11 7289020 7289331 -141494141 + AluSg SINE Alu 1 308 -2 674 251 9 48 chr11 7289331 7289460 -141494012 + L1M4 LINE L1 2288 2408 -3738 1562 189 3 19 chr11 7289460 7289783 -141493689 + L1MD1 LINE L1 5925 6242 0 1595 182 3 55 chr11 7290001 7290308 -141493164 - AluJo SINE Alu -20 292 2 239 338 104 24 chr11 7290587 7290829 -141492643 - MIR SINE MIR -3 259 2 203 88 29 0 chr11 7291110 7291144 -141492328 + (TG)n Simple_repeat Simple_repeat 1 35 0 204 288 0 0 chr11 7291822 7291881 -141491591 - L3 LINE CR1 -158 1419 1361 2392 304 58 27 chr11 7292983 7293906 -141489566 + L2 LINE L2 221 1172 -2142 25 31 0 0 chr11 7296317 7296349 -141487123 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr11 7296475 7296504 -141486968 + AT_rich Low_complexity Low_complexity 1 29 0 2003 119 0 10 chr11 7297299 7297593 -141485879 + AluSq SINE Alu 1 291 -22 21 0 0 0 chr11 7297593 7297614 -141485858 + AT_rich Low_complexity Low_complexity 1 21 0 2062 271 29 13 chr11 7297967 7298766 -141484706 + L1M4 LINE L1 1 1280 -5929 7261 121 9 6 chr11 7298866 7300222 -141483250 - L1P2 LINE L1 -571 5583 4226 5802 153 34 26 chr11 7300322 7301452 -141482020 - HERVH LTR ERV1 -6156 1557 420 6875 59 10 10 chr11 7302673 7303114 -141480358 + L1PA7 LINE L1 5039 5479 -675 2422 82 0 0 chr11 7303114 7303417 -141480055 + AluY SINE Alu 1 303 -8 6875 59 10 10 chr11 7303417 7304077 -141479395 + L1PA7 LINE L1 5478 6140 -14 403 240 70 63 chr11 7304211 7304419 -141479053 + L1M4 LINE L1 5099 5307 -1901 8681 143 17 9 chr11 7304509 7307097 -141476375 - L1MA2 LINE L1 0 7723 5122 6769 140 33 8 chr11 7307098 7308561 -141474911 - L1MA2 LINE L1 -3594 3971 2469 9771 55 9 2 chr11 7308620 7310643 -141472829 - L1PA6 LINE L1 0 6154 4117 20723 37 0 0 chr11 7310643 7313182 -141470290 + L1PA6 LINE L1 1575 4114 -2032 471 63 0 0 chr11 7313188 7313251 -141470221 - L1P4 LINE L1 -349 5819 5757 4856 116 69 42 chr11 7313253 7314389 -141469083 + MER11A LTR ERVK 1 1266 0 5599 173 50 10 chr11 7314390 7316208 -141467264 - L1P4 LINE L1 -406 5759 3868 2539 84 21 32 chr11 7316263 7316642 -141466830 + THE1C LTR MaLR 1 375 0 372 280 0 10 chr11 7316868 7316968 -141466504 + MER72 LTR ERV1 278 376 -346 8849 206 85 2 chr11 7316977 7318938 -141464534 - L1M2 LINE L1 -4722 2127 4 335 269 130 22 chr11 7319274 7319698 -141463774 + L1ME LINE L1 1332 1820 -5127 271 229 0 12 chr11 7319711 7319794 -141463678 - L1M LINE L1 -822 5344 5263 640 256 58 0 chr11 7319798 7319970 -141463502 - MER58A DNA MER1_type 0 224 43 338 216 144 0 chr11 7320001 7320112 -141463360 - L1M4 LINE L1 -880 5266 5140 727 218 74 10 chr11 7320112 7320389 -141463083 - MLT1A2 LTR MaLR 0 390 2 922 271 44 5 chr11 7320411 7320847 -141462625 - L1M4 LINE L1 -1021 5125 4673 255 125 0 0 chr11 7321027 7321067 -141462405 + (TA)n Simple_repeat Simple_repeat 1 40 0 2112 142 0 3 chr11 7321067 7321369 -141462103 - AluSx SINE Alu -11 301 1 6722 171 33 5 chr11 7321379 7321808 -141461664 - L1PA14 LINE L1 -4 6157 5742 2355 111 16 32 chr11 7321808 7322178 -141461294 - THE1B LTR MaLR 0 364 1 6722 171 33 5 chr11 7322178 7322265 -141461207 - L1PA14 LINE L1 -419 5742 5659 2334 145 6 11 chr11 7322265 7322631 -141460841 - THE1B LTR MaLR 0 364 1 6722 171 33 5 chr11 7322631 7324254 -141459218 - L1PA14 LINE L1 -502 5659 3988 880 219 0 9 chr11 7324256 7324466 -141459006 - L1PA14 LINE L1 -2675 3471 3264 2179 105 10 0 chr11 7324889 7325185 -141458287 - AluSg SINE Alu -11 299 1 1929 138 4 4 chr11 7325523 7325799 -141457673 - AluSx SINE Alu -36 276 1 1726 192 39 0 chr11 7325807 7326088 -141457384 - AluJb SINE Alu -20 292 1 563 250 87 23 chr11 7326731 7326903 -141456569 + MIR SINE MIR 6 188 -74 22 70 0 0 chr11 7326916 7326959 -141456513 + AT_rich Low_complexity Low_complexity 1 43 0 269 306 34 41 chr11 7328939 7329086 -141454386 - MIR SINE MIR -17 245 100 660 307 21 56 chr11 7329366 7329744 -141453728 + L1MDa LINE L1 38 402 -6138 4287 156 32 32 chr11 7329769 7330552 -141452920 - LTR39 LTR ERV1 0 783 1 2294 215 70 25 chr11 7331043 7331839 -141451633 + L1MDa LINE L1 1017 1848 -4692 2151 203 30 59 chr11 7331857 7332004 -141451468 - L1MA9 LINE L1 -34 6278 6128 2073 125 6 6 chr11 7332004 7332339 -141451133 + L1MA3 LINE L1 5971 6305 0 2151 203 30 59 chr11 7332339 7332808 -141450664 - L1MA9 LINE L1 -184 6128 5647 186 71 0 0 chr11 7332808 7332836 -141450636 + (CA)n Simple_repeat Simple_repeat 2 29 0 2151 203 30 59 chr11 7332836 7333163 -141450309 - L1MA9 LINE L1 -665 5647 5312 16118 49 0 1 chr11 7333163 7335942 -141447530 - L1PA5 LINE L1 0 6154 3375 2151 203 30 59 chr11 7335942 7336547 -141446925 - L1MA9 LINE L1 -1000 5312 4794 438 114 34 0 chr11 7336571 7336659 -141446813 - L1MB2 LINE L1 -3 6168 6078 1177 126 16 16 chr11 7336659 7336833 -141446639 + AluSp SINE Alu 136 312 -1 3075 147 16 96 chr11 7336833 7337574 -141445898 - L1MB3 LINE L1 -86 6097 5416 593 210 13 49 chr11 7337565 7337798 -141445674 - L1MA9 LINE L1 -1338 4808 4425 * 1947 159 7 7 chr11 7337798 7338099 -141445373 + AluSx SINE Alu 1 301 -11 593 210 13 49 chr11 7338099 7338167 -141445305 - L1MA9 LINE L1 -1721 4425 4356 642 222 31 43 chr11 7338171 7338420 -141445052 - L1MA4 LINE L1 -5 6295 6060 2271 123 0 0 chr11 7338420 7338730 -141444742 - AluSg SINE Alu 0 310 1 1994 138 17 3 chr11 7338733 7339023 -141444449 - AluSg SINE Alu -11 299 6 2102 202 259 18 chr11 7339051 7339896 -141443576 - L1MA9 LINE L1 -1774 4372 3324 9987 200 11 11 chr11 7340698 7343014 -141440458 - L1PA12 LINE L1 -2814 4770 2454 234 0 0 0 chr11 7343019 7343045 -141440427 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5406 203 5 5 chr11 7343048 7344133 -141439339 - L1PA12 LINE L1 -5874 1707 610 332 316 107 25 chr11 7344531 7344727 -141438745 - MIR SINE MIR -30 232 21 319 325 114 42 chr11 7344753 7344990 -141438482 + L3 LINE CR1 1006 1259 -318 21 0 0 0 chr11 7345274 7345295 -141438177 + AT_rich Low_complexity Low_complexity 1 21 0 2434 240 47 6 chr11 7346404 7347124 -141436348 - L1ME1 LINE L1 0 6166 5417 259 159 32 0 chr11 7347193 7347256 -141436216 - L1MDa LINE L1 -3988 2552 2488 37 81 0 0 chr11 7347256 7347342 -141436130 + AT_rich Low_complexity Low_complexity 1 86 0 543 139 16 16 chr11 7347372 7347501 -141435971 - L1MDa LINE L1 -3988 2552 2424 * 1375 221 56 20 chr11 7347500 7347998 -141435474 - L1ME1 LINE L1 -772 5374 4859 361 60 20 0 chr11 7347999 7348049 -141435423 - LTR57 LTR ERVL -360 51 1 4792 160 10 29 chr11 7348051 7348914 -141434558 - LTR57-int LTR ERVL -2 5341 4495 231 153 68 0 chr11 7348914 7348973 -141434499 + L1MA7 LINE L1 6229 6291 0 25 31 0 0 chr11 7349139 7349171 -141434301 + AT_rich Low_complexity Low_complexity 1 32 0 295 280 90 70 chr11 7349451 7349651 -141433821 - L2 LINE L2 -143 3129 2926 23 0 0 0 chr11 7351566 7351589 -141431883 + AT_rich Low_complexity Low_complexity 1 23 0 195 293 17 0 chr11 7351710 7351768 -141431704 - L2 LINE L2 -1 3271 3213 * 788 282 28 5 chr11 7351739 7351952 -141431520 - MIR SINE MIR -25 237 20 252 306 217 0 chr11 7351955 7352112 -141431360 - MIR SINE MIR -71 191 1 1565 68 10 14 chr11 7352428 7352635 -141430837 - AluY SINE Alu 0 311 106 7010 42 36 1 chr11 7353003 7353843 -141429629 - L1PA5 LINE L1 -5 6149 5340 200 59 29 0 chr11 7353843 7353877 -141429595 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7010 42 36 1 chr11 7353877 7354646 -141428826 - L1PA5 LINE L1 -814 5340 4510 345 24 0 0 chr11 7354647 7354689 -141428783 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7677 20 0 4 chr11 7354689 7355704 -141427768 - L1PA3 LINE L1 -13 6142 5129 31422 60 2 12 chr11 7355704 7360007 -141423465 - L1PA5 LINE L1 -1629 4517 258 505 342 58 38 chr11 7360943 7361531 -141421941 - L2 LINE L2 0 3313 2665 1305 307 50 12 chr11 7361531 7362013 -141421459 - MLT1H1 LTR MaLR -55 500 1 3321 218 32 5 chr11 7362657 7363409 -141420063 + L1MB8 LINE L1 5406 6177 -1 2331 78 14 0 chr11 7363551 7363675 -141419797 + AluY SINE Alu 1 122 -189 333 0 0 0 chr11 7363675 7363712 -141419760 + (CA)n Simple_repeat Simple_repeat 2 38 0 2331 78 14 0 chr11 7363712 7363882 -141419590 + AluY SINE Alu 122 299 -12 241 336 0 9 chr11 7364182 7364295 -141419177 - MLT1-int LTR MaLR -862 509 398 382 341 54 48 chr11 7364410 7364489 -141418983 - L2 LINE L2 -1023 2291 2214 1151 200 82 53 chr11 7364489 7364844 -141418628 + MLT1A1 LTR MaLR 1 365 0 382 341 54 48 chr11 7364844 7365095 -141418377 - L2 LINE L2 -1100 2214 1959 793 123 142 112 chr11 7365491 7365514 -141417958 - Tigger3(Golem) DNA MER2_type -357 2672 2651 1041 123 0 0 chr11 7365514 7365693 -141417779 + (TA)n Simple_repeat Simple_repeat 2 180 0 793 123 142 112 chr11 7365693 7365841 -141417631 - Tigger3(Golem) DNA MER2_type -378 2651 2488 1768 164 0 11 chr11 7365841 7366115 -141417357 - AluJb SINE Alu -39 273 3 793 123 142 112 chr11 7366115 7366210 -141417262 - Tigger3(Golem) DNA MER2_type -541 2488 2397 183 100 0 0 chr11 7366210 7366240 -141417232 + (TA)n Simple_repeat Simple_repeat 2 31 0 40 101 0 0 chr11 7366313 7366451 -141417021 + AT_rich Low_complexity Low_complexity 1 138 0 999 278 165 5 chr11 7366518 7366949 -141416523 - LTR33 LTR ERVL -21 500 1 5785 135 113 5 chr11 7367914 7368409 -141415063 - Tigger3b DNA MER2_type -1797 1231 791 1670 168 7 11 chr11 7368409 7368683 -141414789 - AluJb SINE Alu -39 273 1 5785 135 113 5 chr11 7368683 7369298 -141414174 - Tigger3b DNA MER2_type -2237 791 1 2092 99 34 0 chr11 7369668 7369961 -141413511 - AluY SINE Alu -8 303 1 389 257 159 1 chr11 7370568 7370728 -141412744 + MER20B DNA MER1_type 31 215 -4 4319 71 0 17 chr11 7370775 7371352 -141412120 - L1PA8 LINE L1 -3 6169 5603 318 224 0 0 chr11 7371494 7371552 -141411920 - L2 LINE L2 -12 3301 3244 233 333 0 0 chr11 7371635 7371695 -141411777 + L2 LINE L2 2997 3056 -257 266 261 87 29 chr11 7372513 7372944 -141410528 + L1MEd LINE L1 865 1396 -4914 7075 36 21 0 chr11 7372967 7373835 -141409637 - L1P LINE L1 -1541 4605 3720 2117 170 28 19 chr11 7373835 7374339 -141409133 - MLT2A2 LTR ERVL -46 508 1 2383 172 11 5 chr11 7374480 7374893 -141408579 - MLT1C LTR MaLR -57 405 1 2014 134 3 19 chr11 7376963 7377270 -141406202 + AluSx SINE Alu 1 302 -10 2114 104 3 13 chr11 7378731 7379029 -141404443 + AluSx SINE Alu 3 297 -15 203 331 71 47 chr11 7379032 7379159 -141404313 + L2 LINE L2 2356 2485 -829 412 309 65 29 chr11 7380016 7380251 -141403221 + MIR SINE MIR 3 245 -17 7211 204 71 32 chr11 7381223 7382300 -141401172 - L1 LINE L1 -1181 4965 3932 1731 174 10 10 chr11 7382300 7382610 -141400862 - AluJo SINE Alu -2 310 1 7211 204 71 32 chr11 7382610 7382726 -141400746 - L1 LINE L1 -2214 3932 3822 2318 109 0 0 chr11 7382726 7383028 -141400444 - AluSq SINE Alu -11 302 1 7211 204 71 32 chr11 7383028 7383880 -141399592 - L1 LINE L1 -2324 3822 2839 41922 32 30 2 chr11 7383892 7389875 -141393597 - L1PA2 LINE L1 -1 6154 1 1265 269 97 6 chr11 7389876 7390371 -141393101 - L1 LINE L1 -3292 2854 2315 5125 179 29 13 chr11 7390387 7392317 -141391155 - L1PB4 LINE L1 -5 6151 4193 3800 232 57 41 chr11 7392333 7393049 -141390423 + L1M4 LINE L1 4012 4716 -1462 2033 130 11 0 chr11 7393049 7393333 -141390139 + AluSx SINE Alu 1 287 -25 3800 232 57 41 chr11 7393333 7394048 -141389424 + L1M4 LINE L1 4716 5461 -717 400 279 53 37 chr11 7394373 7394563 -141388909 - L1M4 LINE L1 -2697 3449 3257 504 176 0 0 chr11 7394599 7394701 -141388771 + CT-rich Low_complexity Low_complexity 3 104 0 216 135 0 0 chr11 7394808 7394845 -141388627 + (CA)n Simple_repeat Simple_repeat 2 38 0 254 360 75 6 chr11 7397285 7397446 -141386026 - MIR SINE MIR -5 257 86 252 361 23 23 chr11 7397582 7397712 -141385760 - L2 LINE L2 -263 3050 2921 187 359 34 60 chr11 7397826 7398060 -141385412 + L2 LINE L2 2185 2412 -902 328 264 27 18 chr11 7398399 7398509 -141384963 - MIR SINE MIR -78 184 74 843 300 38 54 chr11 7401298 7401744 -141381728 + LTR16A1 LTR ERVL 19 457 0 224 30 30 0 chr11 7401841 7401874 -141381598 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2263 225 52 2 chr11 7402201 7402810 -141380662 + L1 LINE L1 959 1598 -4543 1312 199 4 0 chr11 7402808 7403075 -141380397 + L1 LINE L1 5021 5288 -922 * 2033 117 25 0 chr11 7403075 7403378 -141380094 + AluSx SINE Alu 1 310 0 5782 185 52 84 chr11 7403398 7404139 -141379333 - L1P LINE L1 -1116 5030 4267 7785 16 1 1 chr11 7404139 7405217 -141378255 + L1PA3 LINE L1 5078 6155 0 5782 185 52 84 chr11 7405217 7406560 -141376912 - L1P LINE L1 -1879 4267 3013 638 188 57 17 chr11 7406570 7406746 -141376726 + L1 LINE L1 4427 4609 -1537 1040 167 0 32 chr11 7406750 7406936 -141376536 - MER46A DNA MER2_type -56 180 1 1130 237 87 11 chr11 7406936 7407294 -141376178 + L1MDa LINE L1 1503 1887 -4653 1366 194 26 23 chr11 7614990 7615340 -141168132 + L1M4 LINE L1 4635 4985 -1161 1568 177 0 18 chr11 7615440 7615717 -141167755 + AluJb SINE Alu 27 298 -14 236 303 91 40 chr11 7615865 7616040 -141167432 + MIR3 SINE MIR 21 204 -4 279 281 125 0 chr11 7618484 7618580 -141164892 - MIR SINE MIR -131 131 24 253 266 121 57 chr11 7618759 7618883 -141164589 - L2 LINE L2 0 3272 3141 578 201 175 36 chr11 7619418 7619612 -141163860 - L2 LINE L2 -1119 2195 1975 442 279 21 14 chr11 7619679 7619819 -141163653 + L2 LINE L2 1524 1664 -1650 1419 175 46 4 chr11 7619832 7620095 -141163377 + AluJo SINE Alu 6 279 -33 348 194 0 37 chr11 7620104 7620212 -141163260 + GA-rich Low_complexity Low_complexity 1 104 0 791 231 57 5 chr11 7620215 7620427 -141163045 + L2 LINE L2 1699 1921 -1393 1758 153 3 3 chr11 7622179 7622474 -141160998 + AluJo SINE Alu 15 309 -3 1336 137 32 40 chr11 7622638 7622887 -141160585 - AluJo SINE Alu 0 312 66 246 305 156 24 chr11 7622895 7623062 -141160410 + L2 LINE L2 2715 2903 -411 945 153 68 40 chr11 7623247 7623424 -141160048 + MER58A DNA MER1_type 43 224 0 265 358 96 3 chr11 7623545 7623809 -141159663 - L2 LINE L2 -241 3031 2738 298 364 71 7 chr11 7624386 7624540 -141158932 + MIR3 SINE MIR 22 185 -23 1424 163 77 52 chr11 7626073 7626398 -141157074 - MER44D DNA MER2_type 0 609 7 271 290 130 23 chr11 7626512 7626643 -141156829 - MER5A DNA MER1_type -22 167 23 263 356 19 0 chr11 7628741 7628845 -141154627 + MIR3 SINE MIR 81 186 -22 469 265 94 18 chr11 7629517 7629687 -141153785 + MER63A DNA MER1_type 27 209 -1 676 261 19 12 chr11 7630024 7630185 -141153287 - MIR SINE MIR -49 213 52 685 197 24 8 chr11 7631181 7631308 -141152164 - L2 LINE L2 -1 3312 3184 204 217 33 17 chr11 7631873 7631933 -141151539 - L2 LINE L2 -75 3238 3178 436 281 66 37 chr11 7632141 7632284 -141151188 + MIR3 SINE MIR 19 165 -97 2111 97 7 16 chr11 7632284 7632594 -141150878 + AluSq SINE Alu 1 307 -6 436 281 66 37 chr11 7632594 7632667 -141150805 + MIR3 SINE MIR 165 234 -28 1091 267 80 48 chr11 7632810 7633289 -141150183 + MLT1H LTR MaLR 14 549 0 211 222 37 19 chr11 7633971 7634025 -141149447 - L2 LINE L2 -1 3312 3258 695 146 0 85 chr11 7634025 7634155 -141149317 + AluJb SINE Alu 179 297 -15 1247 283 103 39 chr11 7634155 7634928 -141148544 - L2 LINE L2 -65 3248 2419 615 244 100 44 chr11 7634928 7635157 -141148315 - L2 LINE L2 -1058 2256 2015 1563 108 0 0 chr11 7635345 7635557 -141147915 + AluSg/x SINE Alu 89 300 -12 673 254 66 31 chr11 7636257 7636485 -141146987 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 7636536 7636689 -141146783 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 7636709 7636999 -141146473 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 7637505 7637749 -141145723 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 7637790 7638083 -141145389 - AluSx SINE Alu -17 295 1 1586 166 51 10 chr11 7638084 7638380 -141145092 - AluJb SINE Alu -4 308 1 1954 143 7 3 chr11 7638397 7638705 -141144767 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 7639842 7640129 -141143343 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 7640132 7640182 -141143290 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 7640375 7640539 -141142933 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 7640979 7641272 -141142200 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 7641658 7641729 -141141743 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 7641808 7642261 -141141211 - L2 LINE L2 0 3313 2839 734 231 44 0 chr11 7642355 7642515 -141140957 + FRAM SINE Alu 5 171 -5 353 326 22 7 chr11 7642534 7642669 -141140803 + GA-rich Low_complexity Low_complexity 3 139 0 186 253 67 53 chr11 7643847 7643922 -141139550 + L2 LINE L2 2865 2940 -374 231 185 192 39 chr11 7644322 7644452 -141139020 + L2 LINE L2 1325 1474 -1840 898 238 27 38 chr11 7644457 7644718 -141138754 + L2 LINE L2 2717 2974 -340 2288 76 3 0 chr11 7644930 7645221 -141138251 + AluSp SINE Alu 1 292 -21 3036 231 77 7 chr11 7645229 7646214 -141137258 + L1ME3A LINE L1 5120 6168 -2 2193 101 13 0 chr11 7646293 7646601 -141136871 + AluSx SINE Alu 1 312 0 536 274 46 46 chr11 7646723 7646898 -141136574 - MIR SINE MIR -29 233 59 2076 75 85 0 chr11 7647038 7647320 -141136152 + AluSg SINE Alu 1 306 -4 2213 189 79 38 chr11 7647665 7648115 -141135357 + MER119 DNA MER1_type 1 480 -103 1820 132 35 3 chr11 7648115 7648403 -141135069 + AluSx SINE Alu 1 297 -15 2213 189 79 38 chr11 7648403 7648512 -141134960 + MER119 DNA MER1_type 480 583 0 697 296 64 27 chr11 7649500 7649797 -141133675 + L3 LINE CR1 1075 1382 -195 327 273 130 0 chr11 7649810 7649964 -141133508 + L2 LINE L2 3139 3312 -1 213 286 0 0 chr11 7650122 7650178 -141133294 + L3 LINE CR1 1519 1574 -3 1511 184 27 7 chr11 7650603 7650902 -141132570 - AluJo SINE Alu -7 305 1 255 211 19 0 chr11 7650911 7650963 -141132509 - MARNA DNA Mariner -372 214 162 1957 108 0 71 chr11 7651596 7651919 -141131553 - AluSx SINE Alu -12 300 1 831 187 0 0 chr11 7652209 7652348 -141131124 + FLAM_C SINE Alu 2 140 -3 480 280 13 38 chr11 7652573 7652730 -141130742 - MIR SINE MIR -50 212 60 440 229 76 0 chr11 7652766 7652871 -141130601 + MIR SINE MIR 150 262 0 867 151 17 62 chr11 7653030 7653209 -141130263 - FRAM SINE Alu 0 176 6 213 154 0 0 chr11 7653746 7653785 -141129687 + (TG)n Simple_repeat Simple_repeat 2 40 0 271 207 73 24 chr11 7653869 7653889 -141129583 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 7653889 7653927 -141129545 + (GA)n Simple_repeat Simple_repeat 2 39 0 271 207 73 24 chr11 7653927 7653988 -141129484 + MER21B LTR ERV1 23 90 -773 1179 208 69 38 chr11 7654036 7654369 -141129103 - MSTD LTR MaLR -49 379 1 810 216 61 22 chr11 7654369 7654488 -141128984 + MER21B LTR ERV1 280 410 -453 288 0 0 0 chr11 7654488 7654520 -141128952 + (CA)n Simple_repeat Simple_repeat 2 33 0 810 216 61 22 chr11 7654520 7654579 -141128893 + MER21B LTR ERV1 410 465 -398 186 229 0 0 chr11 7654719 7654754 -141128718 + MIR SINE MIR 216 250 -12 242 286 66 33 chr11 7654836 7654927 -141128545 - L2 LINE L2 -2 3270 3177 381 308 115 0 chr11 7655599 7655729 -141127743 + L2 LINE L2 3111 3255 -17 2300 59 28 0 chr11 7655813 7656100 -141127372 + AluY SINE Alu 1 295 -16 2295 95 0 6 chr11 7656192 7656507 -141126965 + AluSq SINE Alu 1 313 0 677 258 17 77 chr11 7656663 7656896 -141126576 - MIR SINE MIR -25 237 19 1734 107 14 43 chr11 7656965 7657245 -141126227 - AluSx SINE Alu -30 282 11 1600 178 15 15 chr11 7657339 7657677 -141125795 + L1M4 LINE L1 4993 5330 -816 * 4754 142 19 11 chr11 7657673 7658455 -141125017 - L1MB3 LINE L1 -142 6041 5254 668 264 84 71 chr11 7658550 7658713 -141124759 - MLT1G1 LTR MaLR -157 398 238 2307 74 3 3 chr11 7658713 7659023 -141124449 - AluSx SINE Alu -2 310 1 668 264 84 71 chr11 7659023 7659219 -141124253 - MLT1G1 LTR MaLR -317 238 10 2082 111 3 0 chr11 7659499 7659787 -141123685 + AluSx SINE Alu 1 289 -23 1600 108 0 136 chr11 7659986 7660139 -141123333 - L1PA15 LINE L1 -1 6164 6074 2089 100 7 0 chr11 7660139 7660430 -141123042 - AluSx SINE Alu -2 310 18 1600 108 0 136 chr11 7660430 7660592 -141122880 - L1PA15 LINE L1 -91 6074 5892 21 36 0 0 chr11 7660717 7660745 -141122727 + AT_rich Low_complexity Low_complexity 1 28 0 287 100 25 0 chr11 7661140 7661180 -141122292 + Alu SINE Alu 1 41 -262 194 311 170 19 chr11 7661338 7661444 -141122028 - L2 LINE L2 -5 3267 3146 280 245 75 47 chr11 7662637 7662743 -141120729 - MIR SINE MIR -126 136 28 1917 122 6 39 chr11 7662749 7663060 -141120412 - AluJb SINE Alu -11 301 1 2209 55 45 7 chr11 7663067 7663357 -141120115 - AluY SINE Alu -10 301 1 5172 164 87 88 chr11 7664248 7664495 -141118977 - Charlie1a DNA MER1_type -1306 1455 1209 1549 169 17 33 chr11 7664495 7664815 -141118657 - AluJo SINE Alu 0 312 1 5172 164 87 88 chr11 7664815 7665520 -141117952 - Charlie1a DNA MER1_type -1552 1209 505 2043 124 3 0 chr11 7665520 7665811 -141117661 - AluSp SINE Alu -21 292 1 5172 164 87 88 chr11 7665811 7665849 -141117623 - Charlie1a DNA MER1_type -2256 505 468 1980 83 34 0 chr11 7665849 7666151 -141117321 - AluSc SINE Alu 0 319 9 5172 164 87 88 chr11 7666151 7666614 -141116858 - Charlie1a DNA MER1_type -2293 468 1 249 211 77 0 chr11 7666948 7667000 -141116472 - Charlie8 DNA MER1_type -993 1424 1369 24 77 0 0 chr11 7667058 7667110 -141116362 + AT_rich Low_complexity Low_complexity 1 52 0 334 237 128 51 chr11 7667373 7667529 -141115943 + L2 LINE L2 3146 3313 0 747 183 15 0 chr11 7667627 7667758 -141115714 + FLAM_C SINE Alu 1 133 0 603 270 48 58 chr11 7668108 7668566 -141114906 + L1ME4a LINE L1 5472 5925 -196 372 325 6 44 chr11 7669956 7670120 -141113352 + MIR SINE MIR 6 160 -62 371 338 181 32 chr11 7670187 7671252 -141112220 - L2 LINE L2 -345 2969 1746 2524 40 0 0 chr11 7671264 7671562 -141111910 - AluY SINE Alu -13 298 1 801 109 39 8 chr11 7672063 7672191 -141111281 - FLAM_C SINE Alu -11 132 1 25 0 0 0 chr11 7673080 7673105 -141110367 + GC_rich Low_complexity Low_complexity 1 25 0 880 199 96 58 chr11 7673728 7673989 -141109483 + MER21B LTR ERV1 542 812 -51 441 128 32 85 chr11 7675238 7675332 -141108140 + L1MC3 LINE L1 7697 7785 0 539 289 58 0 chr11 7675385 7675541 -141107931 + MIR SINE MIR 49 213 -49 2046 123 0 16 chr11 7676284 7676601 -141106871 - AluSx SINE Alu 0 312 1 200 323 15 0 chr11 7677225 7677290 -141106182 + MIR SINE MIR 197 262 0 300 236 0 0 chr11 7677517 7677606 -141105866 + (CA)n Simple_repeat Simple_repeat 1 89 0 281 233 56 11 chr11 7677788 7677878 -141105594 - L2 LINE L2 -3 3269 3176 2138 102 6 10 chr11 7680917 7681231 -141102241 - AluSp SINE Alu 0 313 1 304 330 82 79 chr11 7681553 7682159 -141101313 - L2 LINE L2 0 3313 2694 236 312 50 64 chr11 7682519 7682660 -141100812 - L2 LINE L2 -2548 766 628 318 345 35 9 chr11 7682758 7682874 -141100598 - L2 LINE L2 -2878 436 318 394 313 22 8 chr11 7682898 7683032 -141100440 + L1ME LINE L1 5449 5584 -537 243 0 0 0 chr11 7683032 7683059 -141100413 + (CA)n Simple_repeat Simple_repeat 2 28 0 500 251 126 13 chr11 7683083 7683488 -141099984 + L1ME4a LINE L1 5191 5641 -525 2334 73 0 3 chr11 7684021 7684323 -141099149 + AluY SINE Alu 1 301 -10 1367 174 8 30 chr11 7684463 7684727 -141098745 - AluJo SINE Alu -10 302 45 605 227 128 34 chr11 7684746 7685099 -141098373 + L1ME4a LINE L1 5733 6118 -3 412 164 0 125 chr11 7685635 7685739 -141097733 + AluJo SINE Alu 87 177 -125 2151 97 3 7 chr11 7686000 7686300 -141097172 + AluSx SINE Alu 6 304 -8 1784 145 6 25 chr11 7687969 7688287 -141095185 + AluJo SINE Alu 1 312 0 575 265 160 10 chr11 7688389 7688589 -141094883 - MIR SINE MIR -27 235 6 741 164 8 15 chr11 7688781 7688915 -141094557 - FLAM_A SINE Alu 0 133 1 419 191 23 183 chr11 7690536 7690798 -141092674 + L1MC5 LINE L1 7710 7929 -32 571 250 99 16 chr11 7690843 7691035 -141092437 + L1MC4 LINE L1 7288 7495 -547 356 297 0 0 chr11 7691019 7691137 -141092335 + L1MC5 LINE L1 7311 7428 -533 * 614 99 0 141 chr11 7691180 7691301 -141092171 + AluJo SINE Alu 85 188 -124 260 130 0 0 chr11 7691363 7691409 -141092063 + MLT1G1 LTR MaLR 532 577 -18 180 375 16 16 chr11 7691557 7691685 -141091787 + L2 LINE L2 2932 3059 -213 1544 182 3 24 chr11 7691926 7692223 -141091249 + AluJb SINE Alu 1 291 -21 206 209 0 23 chr11 7692403 7692446 -141091026 + L2 LINE L2 3256 3297 -16 1930 119 7 7 chr11 7692923 7693216 -141090256 + AluSx SINE Alu 1 293 -19 2049 103 3 3 chr11 7693363 7693645 -141089827 + AluSx SINE Alu 2 283 -29 1126 279 45 45 chr11 7694159 7694711 -141088761 + L1ME LINE L1 5267 5818 -303 3174 169 59 45 chr11 7694791 7695488 -141087984 - L1MB4 LINE L1 0 6180 5474 182 61 0 30 chr11 7695574 7695607 -141087865 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 197 239 22 0 chr11 7695842 7695888 -141087584 + MIR SINE MIR 28 74 -134 551 199 252 0 chr11 7696978 7697129 -141086343 + MER5A DNA MER1_type 1 189 0 1871 118 28 0 chr11 7697863 7698152 -141085320 + AluSx SINE Alu 1 297 -15 857 223 84 44 chr11 7698428 7698679 -141084793 - MIR SINE MIR 0 262 2 306 0 0 0 chr11 7700085 7700119 -141083353 + (CA)n Simple_repeat Simple_repeat 2 35 0 183 80 0 0 chr11 7700388 7700413 -141083059 + (T)n Simple_repeat Simple_repeat 1 25 0 320 299 99 30 chr11 7702187 7702388 -141081084 - MIR SINE MIR -44 218 4 381 102 0 0 chr11 7704260 7704319 -141079153 + (TC)n Simple_repeat Simple_repeat 1 59 0 1730 147 0 18 chr11 7705221 7705500 -141077972 - AluJo SINE Alu -21 291 18 303 324 76 44 chr11 7705501 7705659 -141077813 - MIR SINE MIR -65 143 2 211 325 18 65 chr11 7705859 7706028 -141077444 - MIR SINE MIR -30 232 72 272 250 120 10 chr11 7706077 7706177 -141077295 + MIR3 SINE MIR 4 114 -94 764 183 0 0 chr11 7706424 7706560 -141076912 - FLAM_A SINE Alu 0 136 1 265 204 0 0 chr11 7707082 7707126 -141076346 - MIR SINE MIR -10 252 209 767 277 124 38 chr11 7707521 7707947 -141075525 + L2 LINE L2 2442 2904 -410 485 282 48 27 chr11 7708102 7708290 -141075182 + L2 LINE L2 3117 3308 -5 332 308 36 86 chr11 7708902 7709262 -141074210 + L2 LINE L2 2830 3171 -101 1809 108 20 17 chr11 7709942 7710239 -141073233 - AluSx SINE Alu -14 298 1 2018 97 28 0 chr11 7712497 7712787 -141070685 - AluSq SINE Alu -15 298 1 1355 103 41 0 chr11 7713453 7713648 -141069824 + AluSp SINE Alu 79 281 -32 2279 62 28 0 chr11 7713888 7714177 -141069295 - AluY SINE Alu -14 297 1 407 262 99 0 chr11 7714886 7715027 -141068445 - Charlie2a DNA MER1_type -1199 1663 1509 1869 151 87 53 chr11 7716163 7716579 -141066893 + MSTB1 LTR MaLR 1 430 -2 1485 206 133 50 chr11 7716884 7716940 -141066532 + MER20B DNA MER1_type 8 58 -725 874 129 0 50 chr11 7716940 7717080 -141066392 - FLAM_C SINE Alu 0 133 1 1485 206 133 50 chr11 7717080 7717675 -141065797 + MER20B DNA MER1_type 58 783 0 705 141 107 25 chr11 7718008 7718129 -141065343 + FLAM_C SINE Alu 2 132 -11 2060 78 14 17 chr11 7718269 7718564 -141064908 - AluSg SINE Alu -16 294 1 182 282 183 0 chr11 7719339 7719410 -141064062 + L3 LINE CR1 1436 1519 -58 258 304 59 20 chr11 7720526 7720628 -141062844 + MIR SINE MIR 35 140 -68 1964 149 9 15 chr11 7720879 7721033 -141062439 - MER2 DNA MER2_type -10 335 182 1614 177 7 7 chr11 7721033 7721349 -141062123 + AluJo SINE Alu 1 316 0 1964 149 9 15 chr11 7721349 7721529 -141061943 - MER2 DNA MER2_type -163 182 2 2020 85 66 0 chr11 7723047 7723319 -141060153 - AluSq SINE Alu -23 290 1 651 228 82 5 chr11 7723916 7724100 -141059372 - MIR SINE MIR 0 262 65 1698 131 22 47 chr11 7724100 7724420 -141059052 + AluJo SINE Alu 1 312 0 608 114 48 6 chr11 7726613 7726851 -141056621 - AluSc SINE Alu -23 286 6 3592 115 22 28 chr11 7726851 7727432 -141056040 + LTR9B LTR ERV1 67 644 0 205 301 171 5 chr11 7727513 7727712 -141055760 + L2 LINE L2 718 949 -2365 257 271 281 55 chr11 7730315 7730475 -141052997 + L2 LINE L2 1235 1357 -1957 2023 102 3 24 chr11 7730475 7730770 -141052702 - AluSx SINE Alu -23 289 1 257 271 281 55 chr11 7730770 7731085 -141052387 + L2 LINE L2 1357 1818 -1496 415 291 52 107 chr11 7731369 7731771 -141051701 + L2 LINE L2 2933 3312 -1 370 267 69 0 chr11 7733341 7733457 -141050015 - MIR SINE MIR -80 182 59 2291 84 3 3 chr11 7733597 7733896 -141049576 + AluSp SINE Alu 1 299 -14 303 263 105 0 chr11 7734616 7734711 -141048761 + MIR SINE MIR 81 185 -77 369 0 0 0 chr11 7735681 7735722 -141047750 + (CA)n Simple_repeat Simple_repeat 1 41 0 516 290 135 65 chr11 7736319 7736511 -141046961 - L2 LINE L2 0 3313 3136 2274 79 3 3 chr11 7736511 7736816 -141046656 + AluSp SINE Alu 1 305 -8 516 290 135 65 chr11 7736816 7737054 -141046418 - L2 LINE L2 -177 3136 2853 862 157 42 6 chr11 7737063 7737229 -141046243 + L1MB8 LINE L1 5984 6155 -23 2269 72 0 7 chr11 7738312 7738604 -141044868 - AluSg SINE Alu -20 290 1 2105 109 17 0 chr11 7741683 7741977 -141041495 - AluSx SINE Alu -13 299 1 363 23 0 0 chr11 7742611 7742654 -141040818 - 5S rRNA rRNA -78 43 1 227 297 77 0 chr11 7743498 7743589 -141039883 + L2 LINE L2 3210 3307 -6 752 201 81 11 chr11 7744957 7745131 -141038341 - MER20 DNA MER1_type -2 217 32 248 104 42 0 chr11 7745138 7745186 -141038286 + GA-rich Low_complexity Low_complexity 3 52 0 203 149 0 21 chr11 7745292 7745339 -141038133 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2250 70 0 3 chr11 7749069 7749355 -141034117 + AluY SINE Alu 13 297 -14 2016 237 33 10 chr11 7749698 7750165 -141033307 + LTR40a LTR ERVL 1 478 -41 992 169 142 9 chr11 7750165 7750384 -141033088 + MLT1A1 LTR MaLR 1 248 -117 199 216 6 210 chr11 7750385 7750419 -141033053 - MIR3 SINE MIR -48 160 121 2061 82 64 3 chr11 7750419 7750701 -141032771 - AluSq SINE Alu -14 299 1 199 216 6 210 chr11 7750701 7750842 -141032630 - MIR3 SINE MIR -87 121 50 241 283 83 32 chr11 7751481 7751675 -141031797 - MIR SINE MIR -1 261 11 524 338 57 11 chr11 7752410 7752691 -141030781 + L2 LINE L2 1964 2257 -1057 423 38 0 0 chr11 7753002 7753055 -141030417 + (CA)n Simple_repeat Simple_repeat 2 54 0 1683 164 11 3 chr11 7753057 7753344 -141030128 - AluJo SINE Alu -21 291 3 28 29 0 0 chr11 7753349 7753384 -141030088 + AT_rich Low_complexity Low_complexity 1 35 0 487 319 61 67 chr11 7753630 7753943 -141029529 + L2 LINE L2 2961 3271 -1 795 120 0 0 chr11 7756631 7756739 -141026733 + FLAM_C SINE Alu 6 113 -30 1895 162 3 13 chr11 7757226 7757541 -141025931 + AluJb SINE Alu 1 312 0 1286 221 111 48 chr11 7758868 7759210 -141024262 + MLT1G3 LTR MaLR 1 320 -235 1132 163 4 40 chr11 7759210 7759437 -141024035 - AluJo SINE Alu -8 304 86 1740 145 3 29 chr11 7759212 7759522 -141023950 - AluJo SINE Alu -10 302 1 1286 221 111 48 chr11 7759522 7759693 -141023779 + MLT1G3 LTR MaLR 405 555 0 457 276 112 23 chr11 7759777 7759991 -141023481 + MLT1G1-int LTR MaLR 309 541 -830 2242 89 7 0 chr11 7760105 7760407 -141023065 + AluSp SINE Alu 1 304 -9 311 160 170 0 chr11 7760416 7760439 -141023033 + L1MA10 LINE L1 6218 6236 -98 207 69 0 0 chr11 7760439 7760468 -141023004 + (TG)n Simple_repeat Simple_repeat 1 29 0 311 160 170 0 chr11 7760468 7760544 -141022928 + L1MA10 LINE L1 6236 6334 0 2155 116 0 0 chr11 7760589 7760882 -141022590 + AluSx SINE Alu 1 293 -19 1658 150 37 20 chr11 7761075 7761369 -141022103 - AluJb SINE Alu -13 299 1 2366 76 0 0 chr11 7761453 7761754 -141021718 - AluSp SINE Alu -12 301 1 333 229 21 100 chr11 7762034 7762174 -141021298 + MLT1G1-int LTR MaLR 1055 1183 -188 1514 176 20 14 chr11 7762245 7762540 -141020932 - AluJb SINE Alu -15 297 1 923 118 0 0 chr11 7762540 7762675 -141020797 - AluJb SINE Alu -177 135 1 306 271 71 43 chr11 7762677 7762817 -141020655 + MLT1G1-int LTR MaLR 1221 1364 -7 2246 243 78 5 chr11 7762817 7763369 -141020103 + MLT1G1 LTR MaLR 4 595 0 311 258 22 22 chr11 7763681 7763770 -141019702 + MIR3 SINE MIR 106 194 -14 196 317 49 12 chr11 7764004 7764086 -141019386 - L2 LINE L2 -458 2856 2772 444 254 35 4 chr11 7764197 7764326 -141019146 + MIR3 SINE MIR 65 197 -11 368 212 121 0 chr11 7764452 7764551 -141018921 - L2 LINE L2 -10 3303 3193 265 250 0 48 chr11 7765931 7766015 -141017457 + GA-rich Low_complexity Low_complexity 3 82 0 574 249 93 72 chr11 7767290 7767527 -141015945 - MIR SINE MIR -10 252 11 3419 76 0 18 chr11 7768255 7768713 -141014759 + pTR5 LTR ERV1 1572 2021 -417 381 192 52 26 chr11 7768714 7768826 -141014646 + LTR30 LTR ERV1 375 642 -80 1649 97 9 4 chr11 7768826 7769064 -141014408 + pTR5 LTR ERV1 136 396 -2042 327 188 42 21 chr11 7769113 7769209 -141014263 + MER113 DNA MER1_type? 2 99 -422 705 193 64 138 chr11 7769273 7769490 -141013982 - L2 LINE L2 -4 3309 3122 2193 102 3 0 chr11 7769490 7769793 -141013679 + AluSx SINE Alu 1 304 -8 705 193 64 138 chr11 7769793 7769901 -141013571 - L2 LINE L2 -191 3122 3008 4984 172 35 16 chr11 7770120 7770274 -141013198 + L1MB7 LINE L1 4176 4326 -1858 1959 154 0 0 chr11 7770274 7770572 -141012900 + AluSx SINE Alu 1 298 -14 4984 172 35 16 chr11 7770572 7771349 -141012123 + L1MB7 LINE L1 4326 5087 -1097 306 0 0 0 chr11 7771349 7771383 -141012089 + (CA)n Simple_repeat Simple_repeat 1 34 0 4984 172 35 16 chr11 7771383 7772107 -141011365 + L1MB7 LINE L1 5087 6157 -27 1231 195 39 12 chr11 7772107 7772361 -141011111 + L1MB7 LINE L1 5912 6175 -9 4984 172 35 16 chr11 7772361 7772381 -141011091 + L1MB7 LINE L1 6157 6175 -9 966 126 0 0 chr11 7772964 7773107 -141010365 - AluJb SINE Alu -169 143 1 204 40 0 0 chr11 7773144 7773169 -141010303 + (ATG)n Simple_repeat Simple_repeat 2 26 0 201 158 0 53 chr11 7773228 7773266 -141010206 + L2 LINE L2 3200 3235 -37 219 298 81 24 chr11 7774440 7774564 -141008908 + MIR SINE MIR 44 174 -88 367 154 231 0 chr11 7774684 7774788 -141008684 - L2 LINE L2 -6 3266 3139 682 223 37 53 chr11 7774948 7775136 -141008336 - MIR SINE MIR -45 217 33 2279 99 3 3 chr11 7825211 7825503 -140957969 - AluSg SINE Alu -18 292 1 2441 79 0 7 chr11 7825503 7825808 -140957664 - AluSp SINE Alu -10 303 1 1549 117 44 0 chr11 7825816 7826065 -140957407 - L1MA5A LINE L1 -5 6292 6033 372 154 0 10 chr11 7826461 7826536 -140956936 - L1M4 LINE L1 -2303 3843 3772 1735 186 0 7 chr11 7828813 7829119 -140954353 - AluJo SINE Alu -8 304 1 348 213 0 0 chr11 7829768 7829829 -140953643 - AluJ/FLAM SINE Alu -222 80 20 1846 170 0 16 chr11 7830247 7830559 -140952913 + AluJb SINE Alu 1 307 -5 35 54 0 0 chr11 7830634 7830690 -140952782 + AT_rich Low_complexity Low_complexity 1 56 0 4232 134 42 8 chr11 7830702 7830828 -140952644 - L1PB3 LINE L1 -10 6144 6024 186 43 0 0 chr11 7830828 7830851 -140952621 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 4232 134 42 8 chr11 7830851 7831435 -140952037 - L1PB3 LINE L1 -130 6024 5410 2112 139 0 3 chr11 7831871 7832172 -140951300 + AluSx SINE Alu 1 300 -12 664 221 62 87 chr11 7832190 7832512 -140950960 + HAL1 LINE L1 46 359 -2148 198 103 0 0 chr11 7832542 7832571 -140950901 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1604 119 0 0 chr11 7832670 7832889 -140950583 - AluJb SINE Alu -19 293 75 1187 188 0 0 chr11 7832991 7833198 -140950274 - MER47A DNA MER2_type -159 207 1 739 178 0 8 chr11 7833823 7833952 -140949520 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr11 7833964 7833985 -140949487 + AT_rich Low_complexity Low_complexity 1 21 0 1787 185 8 3 chr11 7833985 7834337 -140949135 - L1MB3 LINE L1 -16 6167 5814 7279 52 2 1 chr11 7834345 7835237 -140948235 - L1PA5 LINE L1 -8 6146 5254 2411 66 0 3 chr11 7835886 7836175 -140947297 - AluY SINE Alu -23 288 1 1860 164 7 3 chr11 7836710 7837009 -140946463 - AluJo SINE Alu -12 300 1 1549 198 128 6 chr11 7838024 7838382 -140945090 + L1ME1 LINE L1 5425 5826 -340 1897 130 4 7 chr11 7839838 7840115 -140943357 - AluSx SINE Alu -26 286 11 350 203 25 0 chr11 7840462 7840541 -140942931 - L1MEc LINE L1 -3751 2464 2384 649 178 0 0 chr11 7840553 7840660 -140942812 - MLT1D LTR MaLR -44 461 355 636 234 77 28 chr11 7840660 7840866 -140942606 - L1MEc LINE L1 -3816 2399 2219 2008 94 0 0 chr11 7840866 7841110 -140942362 - AluSc SINE Alu -65 244 1 636 234 77 28 chr11 7841110 7841151 -140942321 - L1MEc LINE L1 -3996 2219 2181 1423 126 9 23 chr11 7841166 7841381 -140942091 + AluSg/x SINE Alu 85 296 -16 1292 246 94 24 chr11 7841390 7841605 -140941867 + L1 LINE L1 3224 3422 -2724 1568 145 0 38 chr11 7841605 7841867 -140941605 + AluJb SINE Alu 56 307 -5 1292 246 94 24 chr11 7841867 7842160 -140941312 + L1 LINE L1 3422 3768 -2378 301 306 35 0 chr11 7842163 7842248 -140941224 + L1 LINE L1 3821 3908 -2238 23 0 0 0 chr11 7843251 7843274 -140940198 + AT_rich Low_complexity Low_complexity 1 23 0 2626 36 3 3 chr11 7843274 7843578 -140939894 + AluSp SINE Alu 1 304 -9 327 226 165 9 chr11 7844059 7844174 -140939298 - L2 LINE L2 -4 3309 3177 192 97 0 0 chr11 7844218 7844249 -140939223 + (T)n Simple_repeat Simple_repeat 1 31 0 9597 39 2 2 chr11 7844349 7845497 -140937975 + L1P LINE L1 3413 4560 -1586 557 258 36 6 chr11 7845663 7845830 -140937642 - MIR3 SINE MIR -21 187 16 228 297 109 32 chr11 7845883 7846202 -140937270 - L2 LINE L2 -325 2947 2606 1975 157 10 0 chr11 7846491 7846796 -140936676 + AluJo SINE Alu 1 308 -4 233 273 0 78 chr11 7847278 7847355 -140936117 - L2 LINE L2 -2 3311 3241 1702 194 0 7 chr11 7848455 7848764 -140934708 - AluJb SINE Alu -5 307 1 1217 47 0 0 chr11 7850149 7850298 -140933174 - AluY SINE Alu 0 311 163 1627 95 5 0 chr11 7850398 7850609 -140932863 - AluY SINE Alu -99 212 1 2217 91 20 7 chr11 7851821 7852117 -140931355 - AluSc SINE Alu -9 300 1 1198 229 138 52 chr11 7852208 7852365 -140931107 - MER113 DNA MER1_type? -41 480 338 1826 168 3 7 chr11 7852365 7852674 -140930798 - AluJb SINE Alu -4 308 1 1198 229 138 52 chr11 7852674 7852810 -140930662 - MER113 DNA MER1_type? -183 338 215 2327 88 0 7 chr11 7852810 7853107 -140930365 - AluSg SINE Alu -15 295 1 1198 229 138 52 chr11 7853107 7853254 -140930218 - MER113 DNA MER1_type? -306 215 1 32 26 0 0 chr11 7853525 7853564 -140929908 + AT_rich Low_complexity Low_complexity 1 39 0 1543 178 4 26 chr11 7853710 7853979 -140929493 + AluJo SINE Alu 30 292 -20 1678 158 12 59 chr11 7854760 7855082 -140928390 - AluJo SINE Alu -5 307 1 1145 142 0 0 chr11 7855369 7855531 -140927941 + FRAM SINE Alu 2 163 -13 2266 80 0 27 chr11 7856211 7856510 -140926962 - AluY SINE Alu -20 291 1 25 0 0 0 chr11 7856527 7856552 -140926920 + AT_rich Low_complexity Low_complexity 1 25 0 931 146 14 0 chr11 7857942 7858086 -140925386 + FAM SINE Alu 27 172 -13 352 161 0 0 chr11 7858089 7858145 -140925327 + FLAM_A SINE Alu 75 130 -3 2329 70 0 0 chr11 7859338 7859622 -140923850 - AluY SINE Alu -27 284 1 1623 180 3 18 chr11 7859731 7860015 -140923457 - AluJo SINE Alu -22 290 11 379 328 0 0 chr11 7860884 7861000 -140922472 - L2 LINE L2 0 3313 3198 2278 94 7 3 chr11 7862151 7862458 -140921014 - AluSx SINE Alu -4 308 1 2220 126 0 13 chr11 7864297 7864606 -140918866 - AluJb SINE Alu -7 305 1 267 250 94 113 chr11 7865237 7865397 -140918075 + MIR SINE MIR 32 188 -74 1286 114 95 5 chr11 7865611 7865822 -140917650 - MER30 DNA MER1_type 0 230 1 2182 96 24 0 chr11 7866106 7866399 -140917073 + AluSx SINE Alu 3 302 -10 21 0 0 0 chr11 7866399 7866420 -140917052 + AT_rich Low_complexity Low_complexity 1 21 0 263 71 24 0 chr11 7867206 7867248 -140916224 + (TG)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr11 7867441 7867464 -140916008 + GC_rich Low_complexity Low_complexity 1 23 0 2858 237 65 38 chr11 7867946 7869081 -140914391 - L1M4c LINE L1 -4471 2667 1363 821 239 114 0 chr11 7869081 7869282 -140914190 - MER58A DNA MER1_type 0 224 1 2858 237 65 38 chr11 7869282 7869444 -140914028 - L1M4c LINE L1 -5775 1363 1207 264 59 0 0 chr11 7869467 7869501 -140913971 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 595 223 0 0 chr11 7869505 7869617 -140913855 - FLAM_A SINE Alu -18 115 4 391 268 24 16 chr11 7869669 7869792 -140913680 - L1M4c LINE L1 -5667 1188 1065 1211 250 54 11 chr11 7869804 7870084 -140913388 + AluJo SINE Alu 13 304 -8 339 357 75 12 chr11 7870087 7870339 -140913133 - L1M4c LINE L1 -5792 1063 796 255 254 29 133 chr11 7870458 7870599 -140912873 - L1M4c LINE L1 -6613 246 125 1994 103 3 64 chr11 7870599 7870911 -140912561 - AluSx SINE Alu -19 293 1 255 254 29 133 chr11 7870911 7870942 -140912530 - L1M4c LINE L1 -6734 125 92 1634 114 8 0 chr11 7870954 7871190 -140912282 - Tigger5 DNA MER2_type 0 2323 2086 245 177 48 0 chr11 7871451 7871513 -140911959 + CT-rich Low_complexity Low_complexity 1 65 0 1483 206 3 55 chr11 7871513 7871715 -140911757 - AluJb SINE Alu -1 311 131 1709 150 4 0 chr11 7871715 7871968 -140911504 + AluSx SINE Alu 41 294 -18 1483 206 3 55 chr11 7871968 7872091 -140911381 - AluJb SINE Alu -181 131 3 2117 131 0 0 chr11 7872185 7872496 -140910976 + AluSx SINE Alu 1 311 0 1906 157 0 20 chr11 7872520 7872825 -140910647 + AluJo SINE Alu 1 299 -13 335 219 116 43 chr11 7872852 7873016 -140910456 - L1ME4a LINE L1 -73 6048 5873 1379 222 75 28 chr11 7873085 7873281 -140910191 - MLT1A1 LTR MaLR -1 364 146 2386 84 3 7 chr11 7873281 7873591 -140909881 - AluSq SINE Alu -4 309 1 1379 222 75 28 chr11 7873591 7873714 -140909758 - MLT1A1 LTR MaLR -219 146 30 678 266 53 7 chr11 7873965 7874176 -140909296 - L1ME3 LINE L1 -1 6161 5935 659 168 50 17 chr11 7874199 7874318 -140909154 - FLAM_C SINE Alu -19 124 2 330 181 234 0 chr11 7874746 7874840 -140908632 - L1ME4a LINE L1 -12 6109 5994 816 219 96 86 chr11 7874916 7875322 -140908150 - L1ME3 LINE L1 -357 5764 5355 340 83 42 14 chr11 7875343 7875415 -140908057 - L1MA7 LINE L1 0 6291 6218 1232 216 29 19 chr11 7875519 7875834 -140907638 + L1MB7 LINE L1 5852 6169 -15 2358 86 20 0 chr11 7875839 7876140 -140907332 - AluY SINE Alu -4 307 1 26 64 0 0 chr11 7877126 7877173 -140906299 + AT_rich Low_complexity Low_complexity 1 47 0 1765 161 0 21 chr11 7877344 7877635 -140905837 - AluJo SINE Alu -19 293 9 242 298 133 40 chr11 7877698 7877849 -140905623 - L2 LINE L2 -9 3263 3099 470 211 28 18 chr11 7878064 7878173 -140905299 - MIR SINE MIR 0 262 153 309 263 21 0 chr11 7878528 7878623 -140904849 - MIR SINE MIR 0 262 166 184 342 50 33 chr11 7878621 7878741 -140904731 - L2 LINE L2 0 3272 3151 * 280 235 20 29 chr11 7878743 7878845 -140904627 - MIR SINE MIR -97 165 65 694 144 5 40 chr11 7878845 7879047 -140904425 + AluJ SINE Alu 87 312 0 377 121 0 15 chr11 7879049 7879115 -140904357 + (GGAGAA)n Simple_repeat Simple_repeat 3 67 0 1091 148 19 19 chr11 7880047 7880256 -140903216 - AluSg/x SINE Alu -20 292 84 432 0 0 0 chr11 7880355 7880403 -140903069 + (TG)n Simple_repeat Simple_repeat 2 49 0 453 71 14 71 chr11 7880685 7880755 -140902717 + Charlie3 DNA MER1_type 2631 2696 -14 2360 100 0 3 chr11 7880855 7881155 -140902317 - AluSg SINE Alu -11 299 1 300 197 61 0 chr11 7882897 7882963 -140900509 + FAM SINE Alu 89 158 -17 1544 137 9 4 chr11 7883019 7883246 -140900226 - AluJo SINE Alu 0 312 85 2063 111 13 46 chr11 7883309 7883479 -140899993 - AluSx SINE Alu -15 297 140 2308 94 10 0 chr11 7883479 7883787 -140899685 - AluY SINE Alu 0 311 1 2063 111 13 46 chr11 7883787 7883923 -140899549 - AluSx SINE Alu -172 140 1 273 289 164 19 chr11 7884652 7884756 -140898716 - MIR SINE MIR -119 143 25 2388 94 3 0 chr11 7886701 7887008 -140896464 - AluSg SINE Alu -2 308 1 2068 132 0 3 chr11 7887010 7887305 -140896167 - AluJb SINE Alu -18 294 1 2264 108 0 0 chr11 7887640 7887935 -140895537 - AluSg SINE Alu -15 295 1 266 248 28 50 chr11 7889016 7889157 -140894315 + L1M4 LINE L1 4989 5126 -1020 1005 198 86 5 chr11 7890722 7890919 -140892553 - AluJo SINE Alu -99 213 1 384 263 68 8 chr11 7891182 7891315 -140892157 + MIR SINE MIR 51 191 -71 1649 220 6 9 chr11 7891323 7891668 -140891804 - MER2 DNA MER2_type 0 344 1 393 22 0 0 chr11 7891985 7892031 -140891441 + (CA)n Simple_repeat Simple_repeat 2 47 0 324 228 331 7 chr11 7893317 7893462 -140890010 - MIR3 SINE MIR -2 206 15 322 165 141 47 chr11 7894045 7894130 -140889342 - HY4 scRNA scRNA 0 93 1 21 0 0 0 chr11 7894185 7894206 -140889266 + AT_rich Low_complexity Low_complexity 1 21 0 1158 164 200 0 chr11 7894227 7894452 -140889020 - AluJb SINE Alu -22 290 21 2128 115 14 0 chr11 7894474 7894761 -140888711 - AluSx SINE Alu -21 291 1 5913 140 56 15 chr11 7894764 7895182 -140888290 - L1MC1 LINE L1 -11 6322 5922 2538 66 0 22 chr11 7895182 7895500 -140887972 - AluY SINE Alu 0 311 1 5913 140 56 15 chr11 7895500 7896126 -140887346 - L1MC1 LINE L1 -411 5922 5237 663 191 35 0 chr11 7896140 7896281 -140887191 - L1MC1 LINE L1 -1083 5063 4918 26575 67 1 1 chr11 7896381 7899755 -140883717 - L1P LINE L1 -2763 3383 11 3317 162 19 14 chr11 7899764 7900643 -140882829 - L1MB2 LINE L1 -346 6061 5180 2186 138 59 0 chr11 7900644 7901000 -140882472 - L1MB2 LINE L1 -5972 412 36 961 163 35 23 chr11 7901642 7901814 -140881658 + FRAM SINE Alu 3 176 0 185 189 0 0 chr11 7901911 7901948 -140881524 + MIR SINE MIR 220 256 -6 32 0 0 0 chr11 7903103 7903135 -140880337 + AT_rich Low_complexity Low_complexity 1 32 0 1821 180 0 0 chr11 7903141 7903425 -140880047 - AluJo SINE Alu -28 284 1 220 239 0 0 chr11 7903798 7903844 -140879628 - L2 LINE L2 -215 3057 3012 333 307 122 22 chr11 7903934 7904204 -140879268 - L2 LINE L2 -970 2344 2048 1082 213 110 46 chr11 7904235 7904286 -140879186 + HAL1 LINE L1 1012 1058 -1449 2036 119 6 29 chr11 7904286 7904597 -140878875 + AluSx SINE Alu 1 304 -8 1082 213 110 46 chr11 7904597 7904962 -140878510 + HAL1 LINE L1 1058 1455 -1052 1917 127 26 39 chr11 7905731 7906038 -140877434 - AluJb SINE Alu -9 303 1 2270 84 3 39 chr11 7906624 7906933 -140876539 - AluSp SINE Alu -15 298 1 534 219 8 0 chr11 7907365 7907488 -140875984 + HAL1 LINE L1 1658 1781 -726 394 243 72 0 chr11 7907777 7907888 -140875584 - FRAM SINE Alu -1 165 47 387 0 0 0 chr11 7908112 7908155 -140875317 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 250 13 66 chr11 7908744 7908820 -140874652 - MER5B DNA MER1_type -78 100 29 689 229 78 69 chr11 7909063 7909385 -140874087 - MLT1I LTR MaLR 0 409 74 3027 153 86 29 chr11 7909438 7909820 -140873652 - L1MB5 LINE L1 0 6174 5742 2199 103 31 0 chr11 7909820 7910110 -140873362 + AluSx SINE Alu 1 299 -13 3027 153 86 29 chr11 7910110 7910341 -140873131 - L1MB5 LINE L1 -432 5742 5526 771 89 0 0 chr11 7910982 7911083 -140872389 + HY3 scRNA scRNA 1 101 0 2280 50 0 7 chr11 7911096 7911416 -140872056 + AluY SINE Alu 1 318 0 276 216 103 69 chr11 7911655 7911771 -140871701 + L2 LINE L2 2119 2238 -1076 * 644 292 65 0 chr11 7911737 7911922 -140871550 - MIR SINE MIR -7 255 59 228 283 62 53 chr11 7911927 7912040 -140871432 + L2 LINE L2 2579 2692 -622 712 282 183 6 chr11 7912163 7912496 -140870976 + L2 LINE L2 2920 3311 -2 1794 153 7 3 chr11 7914642 7914942 -140868530 - AluJb SINE Alu -11 301 1 2587 43 0 0 chr11 7916213 7916516 -140866956 + AluY SINE Alu 1 303 -8 2314 73 3 0 chr11 7916530 7916831 -140866641 + AluSp SINE Alu 1 302 -11 206 320 13 26 chr11 7917026 7917104 -140866368 + MIR SINE MIR 31 107 -155 2276 90 0 0 chr11 7917118 7917418 -140866054 + AluSq SINE Alu 1 300 -13 327 272 184 8 chr11 7919977 7920102 -140863370 - MIR3 SINE MIR -32 176 30 2463 62 3 0 chr11 7921524 7921831 -140861641 - AluY SINE Alu -3 308 1 379 297 189 0 chr11 7922573 7922721 -140860751 + MIR SINE MIR 68 243 -19 1847 131 25 32 chr11 7922798 7923112 -140860360 + AluJo SINE Alu 1 312 0 197 175 0 25 chr11 7923377 7923417 -140860055 - MIR SINE MIR -137 125 87 426 20 0 0 chr11 7923451 7923502 -140859970 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5621 66 44 44 chr11 7923502 7924558 -140858914 - SVA Other Other -551 1367 433 1863 145 7 0 chr11 7924717 7925013 -140858459 - AluJb SINE Alu -14 298 1 33 0 0 0 chr11 7926595 7926628 -140856844 + AT_rich Low_complexity Low_complexity 1 33 0 2212 99 0 3 chr11 7927502 7927806 -140855666 - AluSc SINE Alu -6 303 1 29 28 0 0 chr11 7928200 7928236 -140855236 + AT_rich Low_complexity Low_complexity 1 36 0 716 177 0 31 chr11 7928257 7928387 -140855085 - AluJo SINE Alu -176 136 11 376 270 54 0 chr11 7930130 7930241 -140853231 - MIR3 SINE MIR -33 175 59 471 127 56 7 chr11 7930757 7930899 -140852573 + (CA)n Simple_repeat Simple_repeat 1 149 0 2174 79 31 0 chr11 7931970 7932262 -140851210 - AluSx SINE Alu -11 301 1 233 353 49 11 chr11 7932670 7932854 -140850618 + L2 LINE L2 2864 3054 -218 305 175 193 9 chr11 7932952 7933066 -140850406 - Charlie2 DNA MER1_type -32 2830 2696 1702 170 7 0 chr11 7933072 7933360 -140850112 + AluJb SINE Alu 1 290 -22 1251 193 161 85 chr11 7933378 7933675 -140849797 - Charlie2 DNA MER1_type -145 2717 2444 1748 170 0 22 chr11 7933675 7933992 -140849480 - AluJo SINE Alu 0 312 3 1251 193 161 85 chr11 7933992 7934496 -140848976 - Charlie2 DNA MER1_type -418 2444 1855 673 269 97 4 chr11 7934486 7934713 -140848759 - Charlie2 DNA MER1_type -2452 330 83 * 260 234 16 0 chr11 7934811 7934875 -140848597 + L1MC/D LINE L1 5712 5776 -2032 21 36 0 0 chr11 7937322 7937350 -140846122 + AT_rich Low_complexity Low_complexity 1 28 0 313 194 90 52 chr11 7937444 7937599 -140845873 + L1MC5 LINE L1 7603 7763 -198 187 345 18 0 chr11 7937769 7937824 -140845648 - MIR SINE MIR -6 256 201 847 191 39 17 chr11 7937890 7938068 -140845404 - Charlie4 DNA MER1_type -1763 198 17 282 282 26 0 chr11 7938080 7938158 -140845314 - L2 LINE L2 -7 3306 3227 2104 113 7 0 chr11 7938163 7938465 -140845007 + AluSx SINE Alu 1 304 -8 2094 126 3 0 chr11 7938493 7938795 -140844677 + AluSx SINE Alu 1 303 -9 1827 146 0 0 chr11 7938804 7939084 -140844388 + AluJb SINE Alu 1 280 -32 2446 109 73 5 chr11 7939267 7939662 -140843810 + L1M2 LINE L1 5254 5675 -616 310 146 0 0 chr11 7939763 7939811 -140843661 + FRAM SINE Alu 72 119 -47 2084 132 3 0 chr11 7940530 7940841 -140842631 - AluSx SINE Alu 0 312 1 2306 66 0 10 chr11 7941081 7941384 -140842088 - AluSx SINE Alu -12 300 1 309 348 49 54 chr11 7943396 7943580 -140839892 - L2 LINE L2 -8 3264 3082 310 221 47 35 chr11 7945711 7945797 -140837675 + MIR3 SINE MIR 70 156 -52 2073 52 0 94 chr11 7945845 7946173 -140837299 - AluY SINE Alu -14 297 1 896 130 139 9 chr11 7946726 7946949 -140836523 + MER33 DNA MER1_type 25 276 -48 188 288 34 0 chr11 7947117 7947176 -140836296 + L3 LINE CR1 955 1015 -562 233 189 19 57 chr11 7947359 7947412 -140836060 + L2 LINE L2 3185 3235 -78 1954 94 0 0 chr11 7948540 7948795 -140834677 + AluSq SINE Alu 1 255 -58 2185 93 3 10 chr11 7948795 7949107 -140834365 + AluSq SINE Alu 3 312 -1 695 256 94 33 chr11 7949169 7949529 -140833943 - HAL1 LINE L1 0 2507 2126 561 256 67 50 chr11 7949562 7949800 -140833672 - HAL1 LINE L1 -443 2064 1823 281 215 156 15 chr11 7949791 7949926 -140833546 - HAL1 LINE L1 -1303 1204 1051 * 30 27 0 0 chr11 7949935 7949972 -140833500 + AT_rich Low_complexity Low_complexity 1 37 0 1969 149 88 24 chr11 7949974 7950383 -140833089 - L1MA7 LINE L1 -1 6290 5856 542 236 177 23 chr11 7950410 7950630 -140832842 - HAL1 LINE L1 -1469 1038 785 1882 94 67 0 chr11 7950642 7950909 -140832563 + AluSx SINE Alu 11 295 -17 433 220 84 96 chr11 7950953 7951203 -140832269 - MER112 DNA MER1_type -6 254 8 2068 89 61 3 chr11 7951281 7951574 -140831898 + AluSg SINE Alu 1 310 0 458 214 262 19 chr11 7951644 7951953 -140831519 - L2 LINE L2 0 3313 1304 718 228 72 2 chr11 7951960 7952233 -140831239 + MER58B DNA MER1_type 8 341 0 1673 256 188 11 chr11 7952233 7952851 -140830621 - L2 LINE L2 -2003 1311 585 323 300 67 25 chr11 7953269 7953389 -140830083 + L2 LINE L2 3137 3261 -11 1788 153 8 67 chr11 7953598 7953957 -140829515 + LTR64 LTR ERVK 1 338 -220 2229 88 3 0 chr11 7954133 7954438 -140829034 - AluY SINE Alu -5 306 1 502 286 134 52 chr11 7954545 7954698 -140828774 - MLT1K LTR MaLR -3 585 446 571 207 83 0 chr11 7954698 7954819 -140828653 + FLAM_A SINE Alu 1 131 -2 502 286 134 52 chr11 7954819 7955112 -140828360 - MLT1K LTR MaLR -142 446 102 1933 119 6 41 chr11 7956936 7957076 -140826396 + AluSx SINE Alu 1 144 -168 2092 98 0 14 chr11 7957076 7957372 -140826100 + AluSg1 SINE Alu 1 292 -17 1933 119 6 41 chr11 7957372 7957551 -140825921 + AluSx SINE Alu 144 309 -3 730 142 7 71 chr11 7957875 7958016 -140825456 + MER52A LTR ERV1 554 685 -1070 2320 80 3 0 chr11 7958314 7958616 -140824856 - AluSc SINE Alu -6 303 1 1807 152 3 3 chr11 7958626 7958915 -140824557 - AluSx SINE Alu -12 300 12 2283 177 66 2 chr11 7959543 7959962 -140823510 - MLT1C LTR MaLR 0 467 22 1459 151 84 0 chr11 7959962 7960200 -140823272 + AluJo SINE Alu 1 258 -54 2035 145 7 0 chr11 7960555 7960852 -140822620 + AluSq SINE Alu 1 299 -14 971 102 58 0 chr11 7962450 7962587 -140820885 + AluJb SINE Alu 168 312 0 29 0 0 0 chr11 8012884 8012913 -140770559 + GC_rich Low_complexity Low_complexity 1 29 0 26 114 0 0 chr11 8013330 8013461 -140770011 + GC_rich Low_complexity Low_complexity 1 131 0 317 271 55 64 chr11 8014544 8014762 -140768710 + L1 LINE L1 3130 3345 -2801 241 106 0 85 chr11 8014821 8014868 -140768604 + tRNA-Ile-ATT tRNA tRNA 7 49 -28 2367 87 0 0 chr11 8014921 8015230 -140768242 - AluSg SINE Alu -1 309 1 348 227 10 41 chr11 8015390 8015487 -140767985 - MIR SINE MIR -102 160 67 226 383 12 0 chr11 8015577 8015658 -140767814 - L2 LINE L2 -87 3185 3104 586 283 69 43 chr11 8015752 8015985 -140767487 - L2 LINE L2 0 3313 3075 336 288 45 20 chr11 8016003 8016201 -140767271 - AluSp SINE Alu 0 303 101 23 0 0 0 chr11 8016286 8016309 -140767163 + GC_rich Low_complexity Low_complexity 1 23 0 1209 101 43 14 chr11 8016690 8016897 -140766575 - AluSp SINE Alu -100 213 1 427 189 42 32 chr11 8017301 8017396 -140766076 + MER21B LTR ERV1 1 96 -767 2193 101 0 0 chr11 8017478 8017774 -140765698 - AluSx SINE Alu -16 296 1 21 0 0 0 chr11 8018118 8018139 -140765333 + AT_rich Low_complexity Low_complexity 1 21 0 423 98 114 167 chr11 8018239 8018282 -140765190 - MER4D LTR ERV1 -639 264 220 1637 150 24 3 chr11 8018282 8018576 -140764896 - AluJb SINE Alu -12 300 1 423 98 114 167 chr11 8018576 8018664 -140764808 - MER4D LTR ERV1 -683 220 140 264 229 0 0 chr11 8018644 8018692 -140764780 + MER4D LTR ERV1 97 144 -759 * 1190 178 4 17 chr11 8018702 8018933 -140764539 + AluJb SINE Alu 41 268 -44 658 176 61 8 chr11 8018934 8019065 -140764407 - MER49 LTR ERV1 -785 138 1 2166 60 35 3 chr11 8019249 8019532 -140763940 + AluY SINE Alu 1 292 -19 1905 123 0 7 chr11 8019636 8019921 -140763551 - AluSx SINE Alu -15 297 15 822 189 6 0 chr11 8019927 8020086 -140763386 + AluJb SINE Alu 146 305 -7 2282 96 3 0 chr11 8020088 8020400 -140763072 + AluSp SINE Alu 1 313 0 576 197 118 8 chr11 8020409 8020536 -140762936 - MLT1A1 LTR MaLR -224 141 1 2422 169 11 20 chr11 8020619 8020857 -140762615 - Tigger2a DNA MER2_type -2274 434 200 2123 109 0 0 chr11 8020857 8021151 -140762321 - AluSg SINE Alu -16 294 1 2422 169 11 20 chr11 8021151 8021350 -140762122 - Tigger2a DNA MER2_type -2508 200 1 1988 108 3 3 chr11 8021512 8021800 -140761672 - AluSx SINE Alu -12 300 13 3620 181 33 41 chr11 8021904 8022206 -140761266 + LTR39 LTR ERV1 1 304 -479 2080 110 0 7 chr11 8022206 8022507 -140760965 + AluSc SINE Alu 1 299 -10 3620 181 33 41 chr11 8022507 8022824 -140760648 + LTR39 LTR ERV1 304 615 -168 2452 40 3 3 chr11 8022824 8023123 -140760349 + AluY SINE Alu 1 299 -12 3620 181 33 41 chr11 8023123 8023291 -140760181 + LTR39 LTR ERV1 615 783 0 531 221 82 0 chr11 8023441 8023563 -140759909 - MER4D LTR ERV1 -8 895 764 1438 143 44 8 chr11 8023576 8023827 -140759645 - MER4D LTR ERV1 -385 518 259 2184 103 0 0 chr11 8023974 8024274 -140759198 - AluSx SINE Alu -10 302 3 2488 131 144 51 chr11 8024299 8024528 -140758944 + MLT2B1 LTR ERVL 4 210 -310 2228 104 13 0 chr11 8024528 8024836 -140758636 - AluSx SINE Alu 0 312 1 2488 131 144 51 chr11 8024836 8025079 -140758393 + MLT2B1 LTR ERVL 210 520 0 357 344 114 30 chr11 8025079 8025209 -140758263 - L1MC4a LINE L1 -1649 6159 6041 2007 100 48 0 chr11 8025209 8025499 -140757973 - AluSg SINE Alu -3 307 4 357 344 114 30 chr11 8025499 8025630 -140757842 - L1MC4a LINE L1 -1767 6041 5876 370 240 10 10 chr11 8025635 8025735 -140757737 - L1MC4a LINE L1 -1984 5824 5725 216 0 0 0 chr11 8025735 8025759 -140757713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2015 81 26 0 chr11 8025766 8026038 -140757434 - AluSg SINE Alu -31 279 1 219 178 20 69 chr11 8026660 8026761 -140756711 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 396 297 73 50 chr11 8027053 8027356 -140756116 - L3 LINE CR1 -458 1119 810 1760 149 7 10 chr11 8027524 8027813 -140755659 + AluSx SINE Alu 1 288 -24 1640 171 18 0 chr11 8027848 8028129 -140755343 + AluJo SINE Alu 1 286 -26 351 65 0 0 chr11 8028129 8028175 -140755297 + (CAT)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr11 8028543 8028566 -140754906 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 109 3 0 chr11 8028932 8029257 -140754215 + AluSp SINE Alu 1 326 0 743 150 39 8 chr11 8029722 8029849 -140753623 + FLAM_C SINE Alu 1 131 -2 2040 91 10 29 chr11 8029870 8030178 -140753294 + AluSg SINE Alu 1 302 -8 538 248 26 0 chr11 8030180 8030293 -140753179 + MER21B LTR ERV1 18 133 -730 2402 201 34 45 chr11 8030331 8030512 -140752960 + MER21B LTR ERV1 136 317 -546 1717 109 113 8 chr11 8030512 8030778 -140752694 + AluSg SINE Alu 1 294 -16 2402 201 34 45 chr11 8030778 8031256 -140752216 + MER21B LTR ERV1 317 755 -108 255 150 25 0 chr11 8031258 8031298 -140752174 - Alu SINE Alu -267 41 1 874 182 96 0 chr11 8031385 8031572 -140751900 + MER39 LTR ERV1 1 205 -502 2080 265 77 34 chr11 8032442 8032790 -140750682 + L1MC4a LINE L1 5255 5587 -2221 2257 88 3 0 chr11 8032790 8033084 -140750388 + AluSx SINE Alu 1 295 -17 2080 265 77 34 chr11 8033084 8033559 -140749913 + L1MC4a LINE L1 5587 6113 -1695 216 67 0 0 chr11 8033591 8033621 -140749851 + (GGA)n Simple_repeat Simple_repeat 2 31 0 351 0 0 0 chr11 8033943 8033982 -140749490 + (CA)n Simple_repeat Simple_repeat 1 39 0 2104 107 0 0 chr11 8034038 8034329 -140749143 + AluSg SINE Alu 1 291 -19 203 122 0 49 chr11 8034540 8034581 -140748891 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2193 109 64 19 chr11 8034588 8034947 -140748525 + THE1C LTR MaLR 1 375 0 271 146 0 0 chr11 8035077 8035125 -140748347 + L1ME4a LINE L1 6073 6120 -1 1358 156 28 86 chr11 8035125 8035451 -140748021 + AluJo SINE Alu 1 307 -5 665 278 45 31 chr11 8035471 8035694 -140747778 + MIR SINE MIR 23 248 -14 237 299 104 0 chr11 8036176 8036243 -140747229 + MIR SINE MIR 40 113 -149 265 345 58 0 chr11 8036393 8036480 -140746992 - LTR67 LTR ERVL -367 190 99 345 338 88 44 chr11 8036758 8037054 -140746418 + MLT1K LTR MaLR 122 430 -158 531 296 11 49 chr11 8037137 8037404 -140746068 + L1MEd LINE L1 1001 1257 -4862 4152 166 67 44 chr11 8037529 8037551 -140745921 - L1M4 LINE L1 -998 5148 5128 1301 171 114 11 chr11 8037551 8037831 -140745641 - AluJo SINE Alu -3 309 1 4152 166 67 44 chr11 8037831 8038645 -140744827 - L1M4 LINE L1 -1018 5128 4283 612 254 0 0 chr11 8038645 8038786 -140744686 - FLAM_A SINE Alu 0 141 1 4152 166 67 44 chr11 8038786 8038940 -140744532 - L1M4 LINE L1 -1863 4283 4134 186 300 117 50 chr11 8039003 8039123 -140744349 - MIR SINE MIR -63 145 18 298 341 225 0 chr11 8040202 8040504 -140742968 + L2 LINE L2 2459 2828 -486 753 320 119 0 chr11 8040507 8040785 -140742687 - HERV16 LTR ERVL -2146 2850 2540 1429 320 79 9 chr11 8040785 8041356 -140742116 + ERVL LTR ERVL 2895 3505 -2259 3103 296 67 48 chr11 8041358 8043025 -140740447 + ERVL LTR ERVL 3357 5383 -381 905 281 139 19 chr11 8043189 8043563 -140739909 + LTR16B LTR ERVL 44 462 -2 1597 101 9 4 chr11 8043617 8043845 -140739627 + AluSc SINE Alu 1 229 -80 1966 125 10 3 chr11 8043880 8044168 -140739304 + AluJb SINE Alu 1 290 -22 1292 67 0 22 chr11 8044505 8044685 -140738787 + AluY SINE Alu 118 293 -18 219 121 0 0 chr11 8044754 8044787 -140738685 + MIR SINE MIR 190 222 -40 * 610 207 67 7 chr11 8044772 8044922 -140738550 + L2 LINE L2 2671 2829 -485 522 297 71 65 chr11 8044952 8045262 -140738210 - MLT1I LTR MaLR -27 382 71 381 223 204 0 chr11 8045345 8045502 -140737970 + L2 LINE L2 2839 3027 -286 263 266 219 41 chr11 8045517 8045686 -140737786 - MIR SINE MIR -12 250 52 1975 104 11 0 chr11 8045695 8045973 -140737499 + AluSx SINE Alu 17 297 -15 1990 103 10 13 chr11 8045984 8046296 -140737176 + AluY SINE Alu 1 311 0 1376 61 17 0 chr11 8046296 8046477 -140736995 + AluSg/x SINE Alu 129 312 0 193 311 97 19 chr11 8046746 8046849 -140736623 + L2 LINE L2 2656 2766 -548 607 174 22 58 chr11 8046896 8047034 -140736438 - AluJo SINE Alu -178 134 2 323 310 71 56 chr11 8047159 8047356 -140736116 + L2 LINE L2 2890 3089 -183 1911 116 34 0 chr11 8047362 8047654 -140735818 - AluSc SINE Alu -6 303 2 270 0 0 0 chr11 8047655 8047685 -140735787 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1789 153 4 0 chr11 8047685 8047966 -140735506 - AluSx SINE Alu -30 282 1 1971 101 14 3 chr11 8048336 8048623 -140734849 + AluSq SINE Alu 5 294 -19 436 273 232 0 chr11 8048628 8048826 -140734646 - MIR SINE MIR -10 252 9 393 240 51 52 chr11 8049090 8049247 -140734225 + MIR3 SINE MIR 1 159 -61 2574 231 67 87 chr11 8049690 8049940 -140733532 + L1ME3A LINE L1 4585 4838 -1332 2131 128 0 0 chr11 8049940 8050244 -140733228 - AluSx SINE Alu -8 304 1 2574 231 67 87 chr11 8050244 8051268 -140732204 + L1ME3A LINE L1 4838 5881 -289 1735 139 52 14 chr11 8051268 8051555 -140731917 + AluJb SINE Alu 1 298 -14 2574 231 67 87 chr11 8051555 8051664 -140731808 + L1ME3A LINE L1 5881 5991 -179 988 161 15 65 chr11 8051664 8051740 -140731732 + MER5A DNA MER1_type 1 79 -110 2130 112 7 3 chr11 8051740 8052045 -140731427 + AluSg SINE Alu 1 306 -4 988 161 15 65 chr11 8052045 8052167 -140731305 + MER5A DNA MER1_type 79 189 0 2574 231 67 87 chr11 8052167 8052406 -140731066 + L1ME3A LINE L1 5991 6169 -1 517 238 82 41 chr11 8052400 8052644 -140730828 + HAL1 LINE L1 1092 1345 -1162 * 722 114 19 0 chr11 8052645 8052750 -140730722 - AluSp SINE Alu -205 108 2 500 236 103 10 chr11 8052925 8053128 -140730344 + L1ME4a LINE L1 5841 6062 -59 620 241 161 6 chr11 8054264 8054438 -140729034 + MIR SINE MIR 61 261 -1 4519 139 31 62 chr11 8054803 8055076 -140728396 + L1M1 LINE L1 4442 4722 -1581 1799 161 0 16 chr11 8055076 8055380 -140728092 + AluJb SINE Alu 1 299 -13 4519 139 31 62 chr11 8055380 8056110 -140727362 + L1M1 LINE L1 4722 5387 -916 461 63 0 0 chr11 8056110 8056173 -140727299 + L1PA6 LINE L1 6090 6152 -2 4519 139 31 62 chr11 8056173 8056425 -140727047 + L1M1 LINE L1 5387 5645 -658 765 134 164 0 chr11 8056426 8056560 -140726912 + MLT1A2 LTR MaLR 219 374 0 384 239 103 49 chr11 8056561 8056745 -140726727 + MARNA DNA Mariner 319 512 -74 1158 106 0 0 chr11 8057405 8057566 -140725906 + AluSg/x SINE Alu 133 293 -17 421 232 29 31 chr11 8057676 8057838 -140725634 - MLT2E LTR ERVL -87 576 201 500 216 0 0 chr11 8058208 8058296 -140725176 - MER81 DNA DNA 0 114 27 4083 177 99 17 chr11 8058379 8058420 -140725052 - L1MB7 LINE L1 0 6184 6148 2044 116 0 0 chr11 8058420 8058728 -140724744 + AluSx SINE Alu 1 308 0 4083 177 99 17 chr11 8058728 8059683 -140723789 - L1MB7 LINE L1 -36 6148 5106 4452 155 44 4 chr11 8059703 8060887 -140722585 + L1PB1 LINE L1 4852 6148 -3 250 224 294 0 chr11 8060995 8061080 -140722392 + L2 LINE L2 3203 3312 -1 525 258 155 7 chr11 8061723 8061878 -140721594 - MER5B DNA MER1_type 0 178 1 1433 222 28 25 chr11 8064116 8064472 -140719000 + L1MC4a LINE L1 5598 5954 -1854 3063 186 35 47 chr11 8064487 8064957 -140718515 + L1MB7 LINE L1 4616 5090 -1094 1557 153 22 7 chr11 8064957 8065232 -140718240 + AluJo SINE Alu 34 312 0 3063 186 35 47 chr11 8065232 8065749 -140717723 + L1MB7 LINE L1 5090 5587 -597 3034 176 12 40 chr11 8065768 8066111 -140717361 - L1MB3 LINE L1 -56 6127 5776 658 154 0 19 chr11 8066111 8066246 -140717226 + FLAM_A SINE Alu 20 142 0 3034 176 12 40 chr11 8066246 8066959 -140716513 - L1MB3 LINE L1 -407 5776 5084 2732 191 33 5 chr11 8066963 8067543 -140715929 + L1MB7 LINE L1 5580 6175 -9 5649 192 87 69 chr11 8067562 8068110 -140715362 + L1MC4a LINE L1 5938 6475 -1333 2166 70 46 0 chr11 8068110 8068394 -140715078 - AluSg SINE Alu -13 297 1 5649 192 87 69 chr11 8068394 8069307 -140714165 + L1MC4a LINE L1 6475 7440 -368 1464 151 78 4 chr11 8069307 8069459 -140714013 - AluJo SINE Alu -21 291 152 216 0 0 0 chr11 8069459 8069483 -140713989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1464 151 78 4 chr11 8069483 8069601 -140713871 - AluJo SINE Alu -160 152 1 5649 192 87 69 chr11 8069601 8069977 -140713495 + L1MC4a LINE L1 7440 7808 0 2208 99 0 6 chr11 8069999 8070311 -140713161 + AluY SINE Alu 1 310 -1 1855 133 3 14 chr11 8070382 8070676 -140712796 - AluJo SINE Alu -9 303 13 2409 82 0 0 chr11 8071125 8071428 -140712044 + AluSx SINE Alu 1 303 -9 243 286 67 0 chr11 8071526 8071645 -140711827 + HAL1b LINE L1 1222 1348 0 195 42 0 0 chr11 8072080 8072104 -140711368 + (GA)n Simple_repeat Simple_repeat 2 25 0 244 219 31 78 chr11 8072558 8072622 -140710850 - L2 LINE L2 -2 3311 3251 1967 101 0 44 chr11 8072763 8073061 -140710411 + AluSq SINE Alu 5 289 -24 328 267 106 37 chr11 8073408 8073569 -140709903 + MIR3 SINE MIR 28 199 -9 382 300 124 26 chr11 8074416 8074831 -140708641 + L2 LINE L2 2795 3250 -22 1397 102 40 31 chr11 8074922 8075148 -140708324 - MER30 DNA MER1_type 0 230 3 1360 190 34 24 chr11 8076227 8076383 -140707089 - AluJb SINE Alu -14 298 145 219 103 0 0 chr11 8076383 8076422 -140707050 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2207 80 3 7 chr11 8076422 8076709 -140706763 - AluSq SINE Alu -27 286 1 1360 190 34 24 chr11 8076709 8076846 -140706626 - AluJb SINE Alu -166 146 1 33 0 0 0 chr11 8076888 8076921 -140706551 + AT_rich Low_complexity Low_complexity 1 33 0 217 299 75 0 chr11 8077435 8077502 -140705970 + MIR SINE MIR 41 112 -96 245 215 154 0 chr11 8077581 8077646 -140705826 + MIR3 SINE MIR 131 205 -3 2246 96 3 3 chr11 8077711 8078024 -140705448 + AluSq SINE Alu 1 313 0 2301 80 0 0 chr11 8078567 8078869 -140704603 + AluY SINE Alu 1 302 -9 2180 90 7 3 chr11 8078877 8079177 -140704295 + AluSc SINE Alu 1 301 -8 1997 128 10 0 chr11 8079226 8079524 -140703948 + AluSx SINE Alu 1 301 -11 1559 183 0 10 chr11 8079712 8080012 -140703460 - AluJo SINE Alu -15 297 1 650 203 24 8 chr11 8080341 8080464 -140703008 + FLAM_C SINE Alu 2 126 -7 1420 175 144 0 chr11 8080481 8080738 -140702734 + AluJb SINE Alu 2 295 -7 2357 73 7 0 chr11 8080739 8081039 -140702433 + AluSp SINE Alu 5 306 -7 645 178 6 118 chr11 8081039 8081208 -140702264 + AluJo/FRAM SINE Alu 137 286 -16 2039 119 0 0 chr11 8081650 8081936 -140701536 + AluSg SINE Alu 1 286 -24 215 31 31 0 chr11 8081940 8081972 -140701500 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 867 155 83 28 chr11 8081986 8082167 -140701305 + L1MB8 LINE L1 5415 5605 -579 815 138 36 7 chr11 8082169 8082307 -140701165 + AluJb SINE Alu 2 143 -169 1989 120 3 13 chr11 8082307 8082446 -140701026 + AluSq SINE Alu 1 140 -173 2091 110 0 3 chr11 8082446 8082737 -140700735 + AluSg SINE Alu 6 295 -15 1989 120 3 13 chr11 8082737 8082898 -140700574 + AluSq SINE Alu 140 298 -15 2511 194 54 42 chr11 8082899 8083037 -140700435 + L1MB8 LINE L1 5598 5733 -445 2254 102 7 0 chr11 8083037 8083341 -140700131 + AluSq SINE Alu 1 306 -7 2511 194 54 42 chr11 8083341 8083879 -140699593 + L1MB8 LINE L1 5733 6132 -46 1771 113 84 0 chr11 8083879 8084153 -140699319 - AluSg SINE Alu -13 297 1 2511 194 54 42 chr11 8084153 8084195 -140699277 + L1MB8 LINE L1 6132 6172 -6 703 107 0 19 chr11 8084207 8084310 -140699162 + AluJb SINE Alu 202 302 -10 2358 66 0 3 chr11 8084337 8084639 -140698833 - AluY SINE Alu -10 301 1 2178 117 0 0 chr11 8084652 8084950 -140698522 - AluSx SINE Alu -14 298 1 3209 77 9 14 chr11 8084979 8085419 -140698053 - L1PA7 LINE L1 0 6154 5717 357 222 111 0 chr11 8085619 8085709 -140697763 + MIR3 SINE MIR 102 201 -7 607 191 7 95 chr11 8085801 8085836 -140697636 - AluJo SINE Alu -176 136 99 2192 95 3 0 chr11 8085836 8086132 -140697340 + AluSq SINE Alu 1 297 -16 2089 69 0 31 chr11 8086134 8086457 -140697015 + AluY SINE Alu 1 314 0 607 191 7 95 chr11 8086457 8086564 -140696908 - AluJo SINE Alu -214 98 3 1970 141 3 0 chr11 8086604 8086908 -140696564 + AluSx SINE Alu 1 305 -7 1716 174 0 28 chr11 8087679 8088000 -140695472 - AluJo SINE Alu 0 312 1 1999 117 10 10 chr11 8088347 8088646 -140694826 + AluSx SINE Alu 3 301 -11 272 263 90 43 chr11 8088989 8089121 -140694351 - MIR SINE MIR -42 166 35 2317 30 3 30 chr11 8089590 8089891 -140693581 - AluY SINE Alu -18 293 1 795 132 47 0 chr11 8089900 8090029 -140693443 - AluJb SINE Alu -176 136 2 2215 86 3 0 chr11 8090156 8090447 -140693025 - AluSp SINE Alu -21 292 1 711 287 28 64 chr11 8090447 8090739 -140692733 - L2 LINE L2 -232 3081 2801 950 184 50 6 chr11 8090739 8090918 -140692554 + MER5A DNA MER1_type 1 187 -2 711 287 28 64 chr11 8090918 8090950 -140692522 - L2 LINE L2 -512 2801 2769 1626 177 0 0 chr11 8091453 8091752 -140691720 - AluJb SINE Alu -13 299 1 1991 99 48 7 chr11 8091760 8092054 -140691418 - AluSq SINE Alu -7 306 1 1436 138 0 0 chr11 8092418 8092548 -140690924 + AluJo SINE Alu 1 133 -179 1772 166 17 0 chr11 8092548 8092844 -140690628 + AluJo SINE Alu 1 301 -11 1436 138 0 0 chr11 8092844 8092931 -140690541 + AluJo SINE Alu 132 218 -94 216 0 0 0 chr11 8092966 8092990 -140690482 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2164 110 0 3 chr11 8093048 8093357 -140690115 + AluSq SINE Alu 1 308 -5 2059 80 28 0 chr11 8093466 8093752 -140689720 + AluY SINE Alu 1 294 -17 266 206 0 98 chr11 8093753 8093855 -140689617 - L1ME3 LINE L1 -16 6146 6055 337 200 143 19 chr11 8093867 8093972 -140689500 - L1ME3 LINE L1 -151 5970 5853 563 285 65 40 chr11 8094194 8094287 -140689185 - L1ME3 LINE L1 -747 5399 5310 1965 107 14 7 chr11 8094287 8094576 -140688896 - AluSx SINE Alu -21 291 1 563 285 65 40 chr11 8094576 8094745 -140688727 - L1ME3 LINE L1 -836 5310 5417 1985 101 3 17 chr11 8094745 8095042 -140688430 - AluSq SINE Alu -20 293 1 563 285 65 40 chr11 8095042 8095248 -140688224 - L1ME3 LINE L1 -728 5418 5219 21 0 0 0 chr11 8095324 8095345 -140688127 + AT_rich Low_complexity Low_complexity 1 21 0 208 241 19 0 chr11 8095380 8095434 -140688038 + CT-rich Low_complexity Low_complexity 4 58 0 723 163 0 8 chr11 8095434 8095557 -140687915 - FLAM_A SINE Alu 0 142 21 2105 127 3 0 chr11 8095619 8095926 -140687546 - AluSq SINE Alu -4 309 2 1722 142 62 0 chr11 8095930 8096218 -140687254 - AluJb SINE Alu -6 306 1 2973 164 30 87 chr11 8096218 8096496 -140686976 - L1MB5 LINE L1 -41 6133 5841 2209 109 3 0 chr11 8096496 8096800 -140686672 - AluSx SINE Alu -7 305 1 2973 164 30 87 chr11 8096800 8097160 -140686312 - L1MB5 LINE L1 -333 5841 5534 3522 125 2 4 chr11 8097160 8097672 -140685800 - MER9 LTR ERVK 0 511 1 2973 164 30 87 chr11 8097672 8097722 -140685750 - L1MB5 LINE L1 -640 5534 5483 2263 84 0 3 chr11 8097983 8098281 -140685191 - AluSx SINE Alu -15 297 1 1399 234 77 36 chr11 8098281 8098725 -140684747 - MLT1C LTR MaLR 0 467 6 2255 99 0 0 chr11 8098755 8099058 -140684414 - AluSg SINE Alu -7 303 1 2605 230 61 20 chr11 8099096 8100080 -140683392 - L1ME3A LINE L1 -161 6009 4983 2330 74 3 0 chr11 8100444 8100743 -140682729 - AluSp SINE Alu -13 300 1 464 245 0 110 chr11 8101054 8101168 -140682304 - MIR SINE MIR -6 256 162 1513 171 40 3 chr11 8101168 8101466 -140682006 - AluJb SINE Alu -3 309 1 464 245 0 110 chr11 8101466 8101506 -140681966 - MIR SINE MIR -100 162 119 2174 127 97 76 chr11 8101539 8101639 -140681833 - MER39 LTR ERV1 -1 706 610 1667 169 19 7 chr11 8101639 8101946 -140681526 + AluJo SINE Alu 1 311 -1 2174 127 97 76 chr11 8101946 8101968 -140681504 - MER39 LTR ERV1 -97 610 590 2394 58 6 16 chr11 8101968 8102281 -140681191 + AluY SINE Alu 1 310 -1 2174 127 97 76 chr11 8102281 8102683 -140680789 - MER39 LTR ERV1 -117 590 170 255 103 0 0 chr11 8102842 8102881 -140680591 + (CAG)n Simple_repeat Simple_repeat 3 41 0 31 26 0 0 chr11 8103022 8103060 -140680412 + GC_rich Low_complexity Low_complexity 1 38 0 259 293 0 0 chr11 8104064 8104122 -140679350 + (CA)n Simple_repeat Simple_repeat 2 59 0 187 293 104 67 chr11 8105425 8105753 -140677719 + L2 LINE L2 1935 2274 -1040 22 35 0 0 chr11 8107531 8107560 -140675912 + AT_rich Low_complexity Low_complexity 1 29 0 301 325 107 19 chr11 8107597 8107803 -140675669 + L2 LINE L2 2350 2573 -741 432 238 99 61 chr11 8107855 8108144 -140675328 + MLT1K LTR MaLR 41 358 -230 241 245 147 29 chr11 8108222 8108324 -140675148 + L2 LINE L2 2615 2728 -586 1821 228 43 83 chr11 8108356 8108695 -140674777 + L1ME3 LINE L1 5555 5906 -256 5115 96 38 12 chr11 8108695 8109454 -140674018 + LTR17 LTR ERV1 1 779 -1 1821 228 43 83 chr11 8109454 8109489 -140673983 + L1ME3 LINE L1 5906 5941 -221 1513 180 0 43 chr11 8109489 8109623 -140673849 + AluJo SINE Alu 12 150 -162 1898 141 0 10 chr11 8109623 8109928 -140673544 + AluSx SINE Alu 1 302 -10 1513 180 0 43 chr11 8109928 8110093 -140673379 + AluJo SINE Alu 150 298 -14 1821 228 43 83 chr11 8110093 8110343 -140673129 + L1ME3 LINE L1 5941 6155 -7 250 300 34 45 chr11 8110360 8110534 -140672938 + L2 LINE L2 2793 2963 -309 1964 112 4 0 chr11 8110683 8110814 -140672658 + AluSg SINE Alu 1 130 -185 216 0 0 0 chr11 8110814 8110838 -140672634 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1964 112 4 0 chr11 8110838 8111020 -140672452 + AluSg SINE Alu 130 315 0 251 242 148 66 chr11 8111175 8111357 -140672115 + MLT1L LTR MaLR 16 212 -403 * 298 277 122 27 chr11 8111326 8111474 -140671998 + MLT1K LTR MaLR 197 358 -230 235 232 14 14 chr11 8111519 8111588 -140671884 + MLT1L LTR MaLR 489 557 -58 4074 161 47 27 chr11 8111609 8111733 -140671739 - L1MB3 LINE L1 -2 6181 6061 2038 94 29 49 chr11 8111733 8112041 -140671431 - AluSx SINE Alu -10 302 1 4074 161 47 27 chr11 8112041 8112668 -140670804 - L1MB3 LINE L1 -122 6061 5415 21 0 0 0 chr11 8112784 8112805 -140670667 + AT_rich Low_complexity Low_complexity 1 21 0 394 265 66 73 chr11 8112909 8112938 -140670534 - L2 LINE L2 -4 3268 3240 642 300 107 0 chr11 8112938 8113171 -140670301 - MIR SINE MIR -1 261 4 394 265 66 73 chr11 8113171 8113277 -140670195 - L2 LINE L2 -32 3240 3134 6226 188 85 56 chr11 8113390 8113627 -140669845 - MER45R DNA AcHobo 0 1581 1352 1897 154 3 0 chr11 8113627 8113919 -140669553 + AluJo SINE Alu 1 293 -19 6226 188 85 56 chr11 8113919 8114615 -140668857 - MER45R DNA AcHobo -229 1352 584 1498 179 144 4 chr11 8114615 8114878 -140668594 + AluJo SINE Alu 1 300 -2 6226 188 85 56 chr11 8114878 8115477 -140667995 - MER45R DNA AcHobo -997 584 4 2162 101 39 0 chr11 8115516 8115802 -140667670 - AluSq SINE Alu -16 297 1 452 289 100 92 chr11 8115892 8116252 -140667220 + L2 LINE L2 2910 3272 0 2362 89 0 16 chr11 8116346 8116660 -140666812 + AluSc SINE Alu 1 309 0 1409 294 90 41 chr11 8116836 8118215 -140665257 + L1M4 LINE L1 3502 4948 -1198 433 258 70 48 chr11 8118482 8118711 -140664761 + L1MEc LINE L1 1397 1630 -4766 30 59 0 0 chr11 8118892 8118943 -140664529 + AT_rich Low_complexity Low_complexity 1 51 0 183 80 0 0 chr11 8118953 8118978 -140664494 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 189 0 0 0 chr11 8118977 8118998 -140664474 + (GA)n Simple_repeat Simple_repeat 2 22 0 359 376 59 0 chr11 8119001 8119203 -140664269 + L1MEc LINE L1 1918 2131 -4265 254 186 0 43 chr11 8119341 8119411 -140664061 + L1M4 LINE L1 3875 3941 -2205 1762 103 53 14 chr11 8119411 8119693 -140663779 + AluY SINE Alu 1 293 -18 13319 123 45 11 chr11 8120179 8122240 -140661232 - Tigger1 DNA MER2_type -287 2131 1 714 289 107 35 chr11 8122300 8122618 -140660854 + MLT1I LTR MaLR 69 409 0 532 253 42 57 chr11 8122639 8122696 -140660776 + L1M4 LINE L1 4316 4372 -1774 1658 153 37 48 chr11 8122696 8122991 -140660481 - AluJo SINE Alu -20 292 1 532 253 42 57 chr11 8122991 8123198 -140660274 + L1M4 LINE L1 4372 4576 -1570 259 268 8 55 chr11 8123281 8123408 -140660064 + C-rich Low_complexity Low_complexity 2 122 0 180 0 0 0 chr11 8123511 8123531 -140659941 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1240 103 0 29 chr11 8123610 8123785 -140659687 + AluSx SINE Alu 1 170 -142 2312 105 0 13 chr11 8123812 8124127 -140659345 - AluSx SINE Alu -1 311 1 957 182 0 16 chr11 8124163 8124350 -140659122 - AluJb SINE Alu -2 310 127 2166 116 0 3 chr11 8124372 8124666 -140658806 - AluSx SINE Alu -19 293 1 2246 102 3 0 chr11 8124698 8125010 -140658462 - AluSp SINE Alu 0 313 1 2425 199 59 109 chr11 8125562 8126236 -140657236 - HAL1 LINE L1 -634 1873 1167 2167 103 3 0 chr11 8126236 8126551 -140656921 - AluSq SINE Alu 0 316 1 1476 153 111 0 chr11 8126558 8126820 -140656652 - AluJb SINE Alu -21 291 1 2425 199 59 109 chr11 8126820 8126995 -140656477 - HAL1 LINE L1 -1346 1161 1063 1690 138 40 20 chr11 8126995 8127293 -140656179 - AluJo SINE Alu -8 304 1 2425 199 59 109 chr11 8127293 8127370 -140656102 - HAL1 LINE L1 -1444 1063 984 1763 187 76 22 chr11 8127502 8127739 -140655733 - L1MB8 LINE L1 0 6178 5955 180 0 0 0 chr11 8127739 8127759 -140655713 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2105 98 3 7 chr11 8127759 8128044 -140655428 - AluSq SINE Alu -29 284 1 1763 187 76 22 chr11 8128044 8128212 -140655260 - L1MB8 LINE L1 -222 5956 5750 1157 174 11 114 chr11 8128230 8128511 -140654961 - AluJo SINE Alu -19 293 42 568 196 116 0 chr11 8128529 8128641 -140654831 - FLAM_C SINE Alu -8 125 1 512 254 103 46 chr11 8128644 8128963 -140654509 - HAL1 LINE L1 -2137 370 2 473 317 18 18 chr11 8129007 8129171 -140654301 - MIR3 SINE MIR -9 199 36 2195 103 7 10 chr11 8129426 8129727 -140653745 + AluSx SINE Alu 1 300 -12 2106 128 0 10 chr11 8130253 8130557 -140652915 + AluSx SINE Alu 6 306 -6 1969 148 3 0 chr11 8131444 8131749 -140651723 - AluSx SINE Alu -6 306 1 1670 180 27 38 chr11 8131848 8131988 -140651484 - L1MD1 LINE L1 0 6242 6102 1457 163 17 21 chr11 8131988 8132276 -140651196 + AluSq SINE Alu 16 302 -11 1670 180 27 38 chr11 8132276 8132508 -140650964 - L1MD1 LINE L1 -140 6102 5874 1292 201 74 72 chr11 8132514 8133017 -140650455 - L1MDa LINE L1 -4561 1519 1016 802 171 0 29 chr11 8133035 8133175 -140650297 - AluJo SINE Alu -176 136 1 265 250 37 9 chr11 8133176 8133313 -140650159 - L1MDa LINE L1 -5064 1019 879 2184 101 13 7 chr11 8133328 8133626 -140649846 - AluSg SINE Alu -10 300 1 1533 238 146 33 chr11 8133635 8133834 -140649638 - L1MDa LINE L1 -5292 778 603 194 62 31 0 chr11 8133834 8133866 -140649606 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1533 238 146 33 chr11 8133866 8134267 -140649205 - L1MDa LINE L1 -5467 603 110 1381 177 90 7 chr11 8134459 8134736 -140648736 + AluJo SINE Alu 3 302 -10 2180 129 0 3 chr11 8135152 8135454 -140648018 - AluSx SINE Alu -11 301 1 274 139 0 23 chr11 8136003 8136046 -140647426 - 5S rRNA rRNA -79 42 1 593 204 38 81 chr11 8137396 8137607 -140645865 - MER112 DNA MER1_type -58 202 1 826 262 16 60 chr11 8139092 8139344 -140644128 - MIR SINE MIR -6 256 16 1628 178 0 24 chr11 8139374 8139667 -140643805 - AluJo SINE Alu -26 286 1 251 173 53 93 chr11 8139712 8139787 -140643685 - MIR SINE MIR -70 192 121 189 386 112 12 chr11 8140209 8140411 -140643061 + L2 LINE L2 2805 3036 -236 1894 140 14 0 chr11 8140411 8140697 -140642775 - AluSx SINE Alu -22 290 1 189 386 112 12 chr11 8140697 8140735 -140642737 + L2 LINE L2 3036 3069 -203 1223 263 94 4 chr11 8142173 8142662 -140640810 - L2 LINE L2 0 3313 2766 2483 179 137 62 chr11 8142706 8143466 -140640006 - L1MC4 LINE L1 0 8042 7226 282 225 14 0 chr11 8143510 8143581 -140639891 - L1MC4 LINE L1 -805 7237 7166 1779 151 37 0 chr11 8143581 8143879 -140639593 - AluJo SINE Alu -3 309 1 1151 178 0 53 chr11 8143885 8144110 -140639362 - AluJo SINE Alu -15 297 85 707 140 156 1 chr11 8144113 8144289 -140639183 - L1MC4 LINE L1 -715 7143 6882 443 228 53 0 chr11 8144294 8144408 -140639064 + L2 LINE L2 3194 3313 0 * 726 273 5 20 chr11 8144407 8144605 -140638867 - L2 LINE L2 -600 2714 2520 937 265 79 0 chr11 8144608 8144861 -140638611 - Charlie8 DNA MER1_type -2143 274 2 1860 170 3 3 chr11 8145773 8146062 -140637410 - AluJb SINE Alu -23 289 1 2113 103 52 0 chr11 8146199 8146489 -140636983 - AluSq SINE Alu -8 305 1 2320 97 7 0 chr11 8146645 8146945 -140636527 - AluSc SINE Alu -7 302 1 1944 156 3 0 chr11 8147575 8147864 -140635608 - AluSx SINE Alu -22 290 1 2305 80 3 0 chr11 8147965 8148251 -140635221 - AluSg SINE Alu -22 288 2 246 245 0 0 chr11 8148466 8148515 -140634957 - MIR SINE MIR -70 138 90 2338 92 3 7 chr11 8148617 8148921 -140634551 - AluSx SINE Alu -9 303 1 1432 152 32 95 chr11 8149107 8149284 -140634188 - AluJo SINE Alu -16 296 146 2006 116 0 40 chr11 8149284 8149585 -140633887 - AluSx SINE Alu -23 289 1 1432 152 32 95 chr11 8149585 8149723 -140633749 - AluJo SINE Alu -166 146 1 950 182 82 29 chr11 8150412 8150692 -140632780 + L1MC5 LINE L1 7589 7883 -78 2232 116 0 0 chr11 8150775 8151068 -140632404 + AluY SINE Alu 2 294 -17 1341 73 11 28 chr11 8151176 8151355 -140632117 - AluSx SINE Alu -136 176 1 1884 153 3 16 chr11 8152386 8152694 -140630778 - AluJo SINE Alu -8 304 1 23 0 0 0 chr11 8152769 8152792 -140630680 + AT_rich Low_complexity Low_complexity 1 23 0 2463 84 0 3 chr11 8152979 8153290 -140630182 - AluSg SINE Alu 0 310 1 2074 87 3 93 chr11 8154097 8154430 -140629042 + AluSx SINE Alu 1 303 -9 267 241 0 0 chr11 8154971 8155025 -140628447 - L1ME4a LINE L1 -95 6026 5973 2493 110 48 20 chr11 8155071 8155425 -140628047 - THE1B LTR MaLR 0 364 1 11706 88 8 27 chr11 8155430 8155801 -140627671 - THE1B-int LTR MaLR -6 1574 1197 2057 125 3 28 chr11 8155801 8156122 -140627350 + AluSp SINE Alu 1 313 0 11706 88 8 27 chr11 8156122 8157356 -140626116 - THE1B-int LTR MaLR -383 1197 1 2324 104 75 23 chr11 8157356 8157701 -140625771 - THE1B LTR MaLR 0 364 2 2217 114 3 10 chr11 8158637 8158945 -140624527 - AluSx SINE Alu -6 306 1 188 115 0 0 chr11 8159639 8159665 -140623807 + L2 LINE L2 3241 3266 -6 268 228 28 4 chr11 8159780 8160043 -140623429 + (CA)n Simple_repeat Simple_repeat 1 269 0 1176 64 0 7 chr11 8160069 8160210 -140623262 - L1PA7 LINE L1 -15 6139 6000 739 299 104 31 chr11 8160370 8160541 -140622931 + L1ME3A LINE L1 4981 5138 -1024 2138 106 3 7 chr11 8160541 8160834 -140622638 - AluSx SINE Alu -20 292 1 739 299 104 31 chr11 8160834 8161374 -140622098 + L1ME3A LINE L1 5138 5652 -510 2429 70 0 3 chr11 8161374 8161673 -140621799 - AluY SINE Alu -13 298 1 1155 114 0 0 chr11 8161681 8161839 -140621633 - AluSp SINE Alu -19 294 137 626 232 52 21 chr11 8161839 8162033 -140621439 + L1ME3A LINE L1 5740 5939 -231 1524 152 119 15 chr11 8162035 8162304 -140621168 + AluJo SINE Alu 1 297 -15 427 228 56 1 chr11 8162370 8162509 -140620963 - MIR SINE MIR 0 262 115 2777 146 30 32 chr11 8162680 8163187 -140620285 - L1MA5 LINE L1 -4 6296 5791 561 193 30 37 chr11 8163244 8163379 -140620093 + MIR SINE MIR 15 148 -114 2095 130 13 0 chr11 8163407 8163706 -140619766 - AluSx SINE Alu -9 303 1 272 410 17 11 chr11 8163784 8163962 -140619510 - MIR3 SINE MIR -17 191 13 1846 158 0 16 chr11 8163988 8164292 -140619180 - AluJb SINE Alu -13 299 1 513 283 40 31 chr11 8164299 8164522 -140618950 - MIR SINE MIR -10 252 28 1777 164 10 7 chr11 8165280 8165572 -140617900 - AluJo SINE Alu -19 293 1 371 326 21 7 chr11 8165597 8165743 -140617729 - MIR SINE MIR -67 141 34 2446 70 3 0 chr11 8165945 8166243 -140617229 + AluSp SINE Alu 1 299 -14 197 308 26 26 chr11 8167670 8167787 -140615685 + L2 LINE L2 2894 3010 -262 366 298 69 23 chr11 8167791 8168009 -140615463 - MLT1L LTR MaLR -2 613 386 1530 200 10 23 chr11 8168074 8168374 -140615098 - AluJo SINE Alu -16 296 1 1818 181 13 3 chr11 8168460 8168769 -140614703 - AluJo SINE Alu 0 312 1 274 287 69 18 chr11 8168781 8168996 -140614476 - MLT1L LTR MaLR -310 201 1 207 303 10 71 chr11 8169370 8169469 -140614003 + L2 LINE L2 3221 3313 0 3924 180 127 77 chr11 8169747 8171018 -140612454 - L1M4 LINE L1 -964 5182 3849 760 249 5 22 chr11 8171019 8171204 -140612268 - AluJo SINE Alu -11 301 120 3733 197 52 47 chr11 8171226 8171613 -140611859 - L1MEc LINE L1 -3887 2509 2126 2403 62 13 10 chr11 8171613 8171919 -140611553 - AluY SINE Alu -4 307 1 3733 197 52 47 chr11 8171919 8172088 -140611384 - L1MEc LINE L1 -4270 2126 1959 573 273 8 0 chr11 8172088 8172220 -140611252 + FLAM_A SINE Alu 1 133 0 3733 197 52 47 chr11 8172220 8172615 -140610857 - L1MEc LINE L1 -4437 1959 1552 1041 98 0 0 chr11 8172615 8172748 -140610724 + AluSq/x SINE Alu 1 133 -180 2360 116 8 25 chr11 8172850 8173203 -140610269 - THE1B LTR MaLR -17 347 1 1550 158 32 80 chr11 8173524 8173835 -140609637 - AluJb SINE Alu -16 296 1 219 69 0 0 chr11 8173836 8173865 -140609607 + (T)n Simple_repeat Simple_repeat 1 29 0 824 234 5 16 chr11 8174438 8174630 -140608842 + AluSc SINE Alu 114 303 -6 1935 130 76 25 chr11 8174658 8175012 -140608460 - THE1C LTR MaLR -3 372 1 1009 281 35 31 chr11 8175014 8175526 -140607946 - L1MEc LINE L1 -4856 1540 1027 2744 231 103 15 chr11 8175534 8175563 -140607909 - L1MEc LINE L1 -5553 843 818 1412 228 10 7 chr11 8175563 8175857 -140607615 - AluJo SINE Alu -13 299 5 2744 231 103 15 chr11 8175857 8176568 -140606904 - L1MEc LINE L1 -5578 818 38 312 70 0 0 chr11 8176607 8176650 -140606822 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr11 8177910 8177951 -140605521 + (TG)n Simple_repeat Simple_repeat 2 42 0 2125 128 3 7 chr11 8177969 8178275 -140605197 - AluSq SINE Alu -8 305 1 2040 113 7 3 chr11 8178831 8179114 -140604358 + AluSc SINE Alu 26 309 0 1834 168 21 0 chr11 8179449 8179735 -140603737 + AluJo SINE Alu 1 292 -20 2432 74 0 7 chr11 8179883 8180181 -140603291 + AluSg SINE Alu 1 296 -14 669 175 0 0 chr11 8180217 8180320 -140603152 - FLAM_A SINE Alu -20 122 20 223 167 0 0 chr11 8180464 8180500 -140602972 - L2 LINE L2 -12 3260 3225 1287 140 154 89 chr11 8180830 8181123 -140602349 + AluJb SINE Alu 1 312 0 21 36 0 0 chr11 8181384 8181412 -140602060 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 8181828 8181852 -140601620 + GC_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr11 8182298 8182335 -140601137 + (A)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr11 8182440 8182471 -140601001 + (A)n Simple_repeat Simple_repeat 1 31 0 282 178 47 122 chr11 8182566 8182673 -140600799 - HsTC2 DNA Tc2 -275 1623 1525 2201 122 3 7 chr11 8182705 8183008 -140600464 - AluSx SINE Alu -10 302 1 297 243 14 0 chr11 8183080 8183154 -140600318 - HsTC2 DNA Tc2 -1823 75 1 994 231 163 36 chr11 8183173 8183536 -140599936 + L1ME4a LINE L1 5494 5902 -268 1161 208 25 36 chr11 8183539 8183813 -140599659 + AluJb SINE Alu 15 285 -27 2556 68 3 3 chr11 8183990 8184298 -140599174 + AluSp SINE Alu 1 308 -5 291 211 53 72 chr11 8184329 8184481 -140598991 + L1ME4a LINE L1 5932 6080 -41 200 320 0 26 chr11 8184505 8184583 -140598889 + MIR SINE MIR 24 99 -109 24 0 0 0 chr11 8184583 8184607 -140598865 + AT_rich Low_complexity Low_complexity 1 24 0 420 209 115 22 chr11 8184721 8184860 -140598612 + MIR SINE MIR 111 262 0 2356 85 0 3 chr11 8185168 8185463 -140598009 - AluY SINE Alu -17 294 1 418 192 58 19 chr11 8186456 8186560 -140596912 - L2 LINE L2 -18 3295 3188 3930 136 47 44 chr11 8186653 8186911 -140596561 + L1MB7 LINE L1 5430 5686 -498 2367 102 10 0 chr11 8186911 8187216 -140596256 + AluSq SINE Alu 1 308 -5 3930 136 47 44 chr11 8187216 8187710 -140595762 + L1MB7 LINE L1 5686 6184 0 550 247 54 40 chr11 8187871 8188008 -140595464 + MIR SINE MIR 1 135 -127 221 73 0 24 chr11 8188008 8188049 -140595423 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1498 185 11 21 chr11 8188049 8188336 -140595136 - AluJb SINE Alu -28 284 1 550 247 54 40 chr11 8188336 8188420 -140595052 + MIR SINE MIR 134 226 -36 456 235 87 0 chr11 8188452 8188567 -140594905 - L1ME4a LINE L1 -293 5828 5704 228 317 119 20 chr11 8188619 8188720 -140594752 + MIR3 SINE MIR 6 116 -92 3453 126 4 0 chr11 8188768 8189270 -140594202 + L1PA15 LINE L1 5656 6159 -6 545 158 18 0 chr11 8189687 8189801 -140593671 + CT-rich Low_complexity Low_complexity 2 117 0 918 154 0 7 chr11 8189803 8189946 -140593526 - AluSc SINE Alu -36 273 132 1696 93 0 9 chr11 8189946 8190172 -140593300 - AluSg/x SINE Alu -4 308 85 258 241 35 0 chr11 8191350 8191408 -140592064 - L1ME4a LINE L1 -470 5651 5592 2078 133 3 0 chr11 8191437 8191730 -140591742 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 8191737 8191775 -140591697 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 8191909 8191939 -140591533 + AT_rich Low_complexity Low_complexity 1 30 0 664 302 21 25 chr11 8192228 8192470 -140591002 + MIR SINE MIR 4 244 -18 236 302 48 56 chr11 8192953 8193079 -140590393 - MIR SINE MIR -86 176 52 1853 121 15 95 chr11 8193224 8193562 -140589910 - AluSx SINE Alu -1 311 1 2244 109 20 0 chr11 8193572 8193876 -140589596 - AluSx SINE Alu -2 310 1 451 290 37 19 chr11 8194706 8194868 -140588604 - MIR3 SINE MIR -15 193 29 409 259 83 62 chr11 8195464 8195657 -140587815 + MIR SINE MIR 10 206 -56 199 337 146 7 chr11 8196776 8197070 -140586402 + L2 LINE L2 1941 2275 -1039 187 294 0 0 chr11 8197235 8197286 -140586186 + L2 LINE L2 2447 2497 -817 245 308 81 38 chr11 8199268 8199453 -140584019 + MIR3 SINE MIR 16 208 0 2221 117 7 0 chr11 8201048 8201356 -140582116 - AluSx SINE Alu -2 310 1 303 236 14 0 chr11 8202825 8202897 -140580575 - L2 LINE L2 0 3272 3200 1523 113 42 0 chr11 8204849 8205062 -140578410 - AluSg/x SINE Alu -9 301 80 832 182 44 0 chr11 8205740 8205899 -140577573 + MER7A DNA MER2_type 6 169 -177 845 179 103 0 chr11 8205983 8206139 -140577333 + MER7A DNA MER2_type 174 345 -1 2300 85 3 0 chr11 8206342 8206653 -140576819 - AluSp SINE Alu 0 312 1 843 226 11 27 chr11 8207083 8207269 -140576203 + MIR SINE MIR 7 189 -73 284 306 92 51 chr11 8209211 8209505 -140573967 + L2 LINE L2 2915 3220 -52 3213 196 50 53 chr11 8210349 8211333 -140572139 - L1MC5 LINE L1 -430 7531 6633 1200 162 60 0 chr11 8211473 8211689 -140571783 - MSTB1 LTR MaLR 0 432 204 688 159 0 0 chr11 8211689 8211796 -140571676 + AluSq/x SINE Alu 2 108 -205 3615 80 31 0 chr11 8411857 8412333 -140371139 - L1P LINE L1 -5649 497 7 1550 133 0 0 chr11 8412504 8412715 -140370757 + AluSq SINE Alu 79 289 -24 11619 83 10 1 chr11 8413018 8414647 -140368825 - L1P LINE L1 -1485 4661 3018 1066 68 25 0 chr11 8414640 8414802 -140368670 + L1P LINE L1 4675 4840 -1306 * 270 0 0 0 chr11 8414902 8414932 -140368540 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 297 0 0 0 chr11 8414931 8414964 -140368508 + (TG)n Simple_repeat Simple_repeat 2 34 0 5352 110 15 23 chr11 8415691 8416591 -140366881 + L1MA4A LINE L1 5231 6122 -181 292 185 0 62 chr11 8416595 8416676 -140366796 + L1MA4A LINE L1 6188 6263 -40 7530 27 5 0 chr11 8416778 8417939 -140365533 + L1PA4 LINE L1 4980 6144 -11 1751 281 117 37 chr11 8417948 8418796 -140364676 + L1M4 LINE L1 2354 3133 -3013 1759 165 0 52 chr11 8418796 8419123 -140364349 + AluJo SINE Alu 1 310 -2 1751 281 117 37 chr11 8419123 8419801 -140363671 + L1M4 LINE L1 3133 4001 -2145 13233 41 1 3 chr11 8419916 8421566 -140361906 + L1P LINE L1 1422 3067 -3079 1324 209 38 48 chr11 8421666 8421744 -140361728 - L1M4 LINE L1 -1798 4348 4271 180 0 0 0 chr11 8421744 8421764 -140361708 + (TG)n Simple_repeat Simple_repeat 2 21 0 1324 209 38 48 chr11 8421764 8422024 -140361448 - L1M4 LINE L1 -1875 4271 4012 7388 71 22 2 chr11 8422024 8423838 -140359634 - L1PA7 LINE L1 -3 6151 4316 1324 209 38 48 chr11 8423838 8423871 -140359601 - L1M4 LINE L1 -2134 4012 3980 14747 27 5 0 chr11 8424017 8426484 -140356988 - L1PA4 LINE L1 -57 6098 3625 2254 102 7 3 chr11 8426595 8426900 -140356572 + AluSp SINE Alu 1 306 -7 7178 154 17 2 chr11 8427276 8429554 -140353918 - L1PB2 LINE L1 -1 6150 3837 377 171 199 74 chr11 8429724 8429837 -140353635 - MER112 DNA MER1_type -15 245 147 1807 169 3 10 chr11 8429837 8430144 -140353328 + AluJo SINE Alu 1 305 -7 377 171 199 74 chr11 8430144 8430206 -140353266 - MER112 DNA MER1_type -112 148 48 2132 123 0 0 chr11 8430217 8430534 -140352938 + AluSx SINE Alu 1 317 0 772 269 60 0 chr11 8430936 8431137 -140352335 - MIR SINE MIR -9 253 41 216 283 0 0 chr11 8431521 8431574 -140351898 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1139 156 12 38 chr11 8431652 8432052 -140351420 + MLT1D LTR MaLR 1 505 0 461 268 196 22 chr11 8432123 8432347 -140351125 + L3 LINE CR1 1191 1453 -124 421 269 35 47 chr11 8432391 8432562 -140350910 - MIR SINE MIR -40 222 54 242 379 73 8 chr11 8432626 8432750 -140350722 - L2 LINE L2 0 3272 3141 1383 292 108 15 chr11 8433115 8434008 -140349464 + L1M4 LINE L1 4247 5222 -924 1569 144 72 22 chr11 8434092 8434369 -140349103 - AluJo SINE Alu -19 293 3 855 133 47 0 chr11 8434978 8435106 -140348366 + AluJo SINE Alu 1 134 -178 2508 172 0 0 chr11 8435347 8435782 -140347690 + L1P LINE L1 4497 4931 -1215 2159 116 0 54 chr11 8436031 8436384 -140347088 + MER1B DNA MER1_type 4 337 0 363 163 0 0 chr11 8436910 8436990 -140346482 + CT-rich Low_complexity Low_complexity 1 80 0 459 224 0 0 chr11 8437060 8437167 -140346305 + (TA)n Simple_repeat Simple_repeat 2 108 0 785 270 0 38 chr11 8438346 8438557 -140344915 + MIR SINE MIR 6 208 -54 267 286 20 31 chr11 8438765 8438863 -140344609 + L3 LINE CR1 1480 1576 -1 1862 205 63 14 chr11 8439044 8439348 -140344124 + MER63B DNA MER1_type 1 332 -730 1829 140 16 45 chr11 8439348 8439662 -140343810 - AluJo SINE Alu -7 305 1 1862 205 63 14 chr11 8439662 8439771 -140343701 + MER63B DNA MER1_type 332 434 -2 6045 96 27 8 chr11 8440542 8441950 -140341522 - L1PA15 LINE L1 -8 6157 4722 3924 154 70 35 chr11 8442005 8443567 -140339905 - L1MB7 LINE L1 -19 6165 4556 5740 139 28 16 chr11 8443773 8445117 -140338355 + L1PA14 LINE L1 4803 6161 0 675 269 137 15 chr11 8445171 8445506 -140337966 - L1MC/D LINE L1 -2059 5749 5374 206 234 31 47 chr11 8445683 8445747 -140337725 - L2 LINE L2 0 3313 3251 1611 187 49 6 chr11 8446600 8446948 -140336524 - Tigger6a DNA MER2_type -1 1082 720 1695 166 47 1 chr11 8446950 8447390 -140336082 - Tigger6a DNA MER2_type -576 507 2 503 247 91 0 chr11 8447665 8447819 -140335653 - L1 LINE L1 -1037 5109 4942 39359 70 7 25 chr11 8447828 8453924 -140329548 - L1PA6 LINE L1 -168 5986 1 3547 174 434 9 chr11 8453923 8455145 -140328327 - L1 LINE L1 -1189 4957 3217 * 603 277 148 57 chr11 8455150 8455645 -140327827 - L1MEd LINE L1 -5028 1091 552 3782 92 24 16 chr11 8456047 8456622 -140326850 + L1MA3 LINE L1 5726 6305 0 1708 82 10 33 chr11 8458519 8458822 -140324650 + Tigger3(Golem) DNA MER2_type 2248 2543 -486 852 323 46 32 chr11 8458822 8459323 -140324149 + L1M3b LINE L1 5 512 -5769 687 289 0 5 chr11 8459588 8459799 -140323673 + L1M3b LINE L1 1096 1305 -4976 2080 156 0 0 chr11 8459799 8460094 -140323378 + AluSx SINE Alu 1 295 -17 767 137 75 27 chr11 8460133 8460279 -140323193 + THE1B LTR MaLR 197 349 -15 3216 89 16 10 chr11 8460290 8460784 -140322688 + THE1B-int LTR MaLR 1 497 -1083 720 122 0 0 chr11 8460784 8460882 -140322590 + AluSg SINE Alu 1 98 -212 331 138 11 23 chr11 8460882 8460969 -140322503 + L1MA4 LINE L1 3109 3194 -2952 5814 178 51 31 chr11 8461287 8463054 -140320418 + L1MA4 LINE L1 3177 4907 -1393 3164 32 0 0 chr11 8463054 8463427 -140320045 - L1PA5 LINE L1 0 6154 5782 5814 178 51 31 chr11 8463427 8463715 -140319757 + L1MA4 LINE L1 4907 5188 -1112 2345 100 3 0 chr11 8463715 8464026 -140319446 + AluSq SINE Alu 1 312 -1 5814 178 51 31 chr11 8464026 8464920 -140318552 + L1MA4 LINE L1 5188 6289 -11 2722 131 49 10 chr11 8464920 8465410 -140318062 + Tigger3(Golem) DNA MER2_type 2521 3029 0 399 147 0 0 chr11 8465410 8465478 -140317994 - L1 LINE L1 -1406 4740 4673 268 341 23 8 chr11 8465516 8465645 -140317827 + L2 LINE L2 3179 3309 -4 334 136 25 0 chr11 8466850 8466931 -140316541 + (TA)n Simple_repeat Simple_repeat 1 83 0 1883 46 0 13 chr11 8466984 8467222 -140316250 + L1PA7 LINE L1 5920 6154 0 3084 91 24 4 chr11 8467335 8467797 -140315675 - L1MA1 LINE L1 0 6302 5832 1812 129 43 7 chr11 8468223 8468502 -140314970 + AluJb SINE Alu 3 291 -21 1058 180 43 5 chr11 8468606 8468817 -140314655 - MER20 DNA MER1_type 0 219 1 22 35 0 0 chr11 8470054 8470083 -140313389 + AT_rich Low_complexity Low_complexity 1 29 0 2538 210 28 58 chr11 8470180 8470235 -140313237 - L1MA9 LINE L1 -39 6273 6218 261 0 0 0 chr11 8470235 8470264 -140313208 + (GA)n Simple_repeat Simple_repeat 2 30 0 2538 210 28 58 chr11 8470264 8470720 -140312752 - L1MA9 LINE L1 -94 6218 5790 1496 208 26 29 chr11 8470720 8471032 -140312440 - AluJo SINE Alu -1 311 1 2538 210 28 58 chr11 8471032 8471295 -140312177 - L1MA9 LINE L1 -522 5790 5521 199 161 0 0 chr11 8472481 8472512 -140310960 - L2 LINE L2 -1 3271 3241 1094 220 46 9 chr11 8472778 8472996 -140310476 + MIR SINE MIR 6 231 -31 1623 184 13 7 chr11 8473016 8473325 -140310147 - AluJb SINE Alu -1 311 1 744 97 0 18 chr11 8473389 8473503 -140309969 - AluSg SINE Alu 0 310 199 688 113 21 0 chr11 8473508 8473605 -140309867 - AluSg SINE Alu -210 100 2 1132 181 10 42 chr11 8473654 8473841 -140309631 + L1MDa LINE L1 1065 1256 -5205 1637 155 44 73 chr11 8473841 8473952 -140309520 + AluJo SINE Alu 1 114 -198 2362 98 3 0 chr11 8473952 8474258 -140309214 + AluSx SINE Alu 2 308 -4 1637 155 44 73 chr11 8474258 8474463 -140309009 + AluJo SINE Alu 114 308 -4 1132 181 10 42 chr11 8474463 8474593 -140308879 + L1MDa LINE L1 1256 1668 -4793 330 325 13 53 chr11 8474597 8474791 -140308681 - L1MC4 LINE L1 -393 7467 7227 2418 71 0 0 chr11 8475010 8475306 -140308166 - AluSq SINE Alu -16 297 2 425 291 24 0 chr11 8476516 8476643 -140306829 - MER117 DNA MER1_type 0 197 68 1245 210 0 0 chr11 8476821 8477045 -140306427 - MER58A DNA MER1_type 0 224 1 494 341 39 0 chr11 8477053 8477235 -140306237 + MER5A DNA MER1_type 1 189 0 357 319 69 5 chr11 8477256 8477444 -140306028 - L1M4 LINE L1 -2577 3569 3370 1220 236 143 31 chr11 8477446 8477962 -140305510 + MLT1G LTR MaLR 1 574 -16 575 296 73 45 chr11 8477989 8478309 -140305163 - L1M4 LINE L1 -2793 3353 3013 2114 132 0 3 chr11 8478309 8478619 -140304853 + AluSx SINE Alu 1 309 -3 575 296 73 45 chr11 8478619 8478788 -140304684 - L1M4 LINE L1 -3133 3013 2850 1622 212 102 36 chr11 8479342 8479814 -140303658 - MLT1D LTR MaLR 0 505 3 664 228 24 134 chr11 8480167 8480421 -140303051 + MIR SINE MIR 6 231 -31 1366 125 76 163 chr11 8480736 8481209 -140302263 - LTR23 LTR ERV1 -5 432 1 22 35 0 0 chr11 8481367 8481396 -140302076 + AT_rich Low_complexity Low_complexity 1 29 0 446 225 43 7 chr11 8481831 8481969 -140301503 - L1ME3A LINE L1 -6 6164 6022 1749 138 35 48 chr11 8482025 8482336 -140301136 + AluSq SINE Alu 1 307 -6 248 195 67 65 chr11 8482389 8482532 -140300940 - L1ME3A LINE L1 -211 5955 5811 1651 261 52 24 chr11 8482630 8482893 -140300579 - L1M3 LINE L1 -361 6308 6054 1994 117 21 3 chr11 8482893 8483183 -140300289 - AluSc SINE Alu -14 295 1 1651 261 52 24 chr11 8483183 8484261 -140299211 - L1M3 LINE L1 -615 6054 4914 787 237 28 0 chr11 8484272 8484429 -140299043 - L1MA10 LINE L1 -7 6327 6161 186 43 0 0 chr11 8484429 8484452 -140299020 + (TTA)n Simple_repeat Simple_repeat 2 24 0 787 237 28 0 chr11 8484452 8484505 -140298967 - L1MA10 LINE L1 -173 6161 6111 965 127 5 89 chr11 8484506 8484719 -140298753 - MER6 DNA MER2_type 0 865 671 851 185 11 0 chr11 8484725 8484959 -140298513 - L1M2 LINE L1 -743 5403 5211 22 0 0 0 chr11 8484959 8484981 -140298491 + AT_rich Low_complexity Low_complexity 1 22 0 6153 77 17 7 chr11 8484984 8486501 -140296971 - SVA Other Other -760 1369 32 213 39 0 0 chr11 8486521 8486547 -140296925 + (GGGAGA)n Simple_repeat Simple_repeat 4 29 0 824 219 25 21 chr11 8486709 8486947 -140296525 - L1M3 LINE L1 -2269 4375 4137 1449 189 32 74 chr11 8486956 8487043 -140296429 - L1M3 LINE L1 -4732 1914 1825 2066 129 30 3 chr11 8487043 8487338 -140296134 + AluJb SINE Alu 1 303 -9 1449 189 32 74 chr11 8487338 8487721 -140295751 - L1M3 LINE L1 -4821 1825 1464 2514 61 0 0 chr11 8487931 8488226 -140295246 + AluY SINE Alu 1 295 -16 23 0 0 0 chr11 8488243 8488266 -140295206 + AT_rich Low_complexity Low_complexity 1 23 0 225 214 0 0 chr11 8488650 8488692 -140294780 + T-rich Low_complexity Low_complexity 1 42 0 36570 83 4 7 chr11 8488701 8494854 -140288618 - L1PA6 LINE L1 -7 6147 11 5387 211 26 44 chr11 8494872 8495054 -140288418 - L1M3 LINE L1 -5070 1472 1288 1648 201 55 26 chr11 8495054 8495437 -140288035 + MSTD LTR MaLR 3 396 0 5387 211 26 44 chr11 8495437 8495518 -140287954 - L1M3 LINE L1 -5254 1288 1207 1828 187 10 3 chr11 8495518 8495828 -140287644 - AluJo SINE Alu 0 312 1 5387 211 26 44 chr11 8495828 8497054 -140286418 - L1M3 LINE L1 -5335 1207 8 760 326 112 58 chr11 8497086 8497362 -140286110 + L2 LINE L2 1932 2192 -1122 1950 144 13 0 chr11 8497362 8497661 -140285811 - AluJo SINE Alu -9 303 1 760 326 112 58 chr11 8497661 8498142 -140285330 + L2 LINE L2 2192 2730 -584 1041 321 67 29 chr11 8498151 8498876 -140284596 - L2 LINE L2 -69 3203 2464 392 331 16 8 chr11 8501532 8501656 -140281816 + L2 LINE L2 2927 3051 -221 299 277 8 108 chr11 8501688 8501772 -140281700 - MIR SINE MIR -27 235 167 2353 68 0 7 chr11 8501772 8502098 -140281374 + AluY SINE Alu 1 311 0 299 277 8 108 chr11 8502098 8502143 -140281329 - MIR SINE MIR -95 167 119 227 270 16 16 chr11 8503384 8503447 -140280025 - L2 LINE L2 -60 3212 3150 22 0 0 0 chr11 8503470 8503492 -140279980 + AT_rich Low_complexity Low_complexity 1 22 0 435 242 245 49 chr11 8504466 8504792 -140278680 - L3 LINE CR1 -7 1570 1181 181 241 19 74 chr11 8504855 8504909 -140278563 - L2 LINE L2 -7 3265 3215 2225 128 0 0 chr11 8504937 8505242 -140278230 - AluSx SINE Alu -7 305 1 2183 70 10 73 chr11 8505356 8505670 -140277802 - AluSc SINE Alu -15 294 1 366 23 0 0 chr11 8507620 8507663 -140275809 + (TG)n Simple_repeat Simple_repeat 2 44 0 736 272 111 0 chr11 8508085 8508387 -140275085 - L2 LINE L2 -175 3138 2793 334 239 36 56 chr11 8508547 8508723 -140274749 - MLT1L LTR MaLR -308 161 7 520 196 142 88 chr11 8509346 8509586 -140273886 + MER112 DNA MER1_type 8 260 0 2013 132 0 7 chr11 8510614 8510903 -140272569 - AluSp SINE Alu -17 296 10 1094 210 39 11 chr11 8511155 8511441 -140272031 - AluSq SINE Alu -9 294 1 24 0 0 0 chr11 8512023 8512047 -140271425 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr11 8512613 8512666 -140270806 + AT_rich Low_complexity Low_complexity 1 53 0 1474 166 70 0 chr11 8512726 8512985 -140270487 + Tigger1 DNA MER2_type 230 506 -1912 1668 186 3 14 chr11 8513103 8513394 -140270078 + AluJo SINE Alu 1 288 -24 24 0 0 0 chr11 8513397 8513421 -140270051 + AT_rich Low_complexity Low_complexity 1 24 0 325 300 8 8 chr11 8513683 8513813 -140269659 - HAL1b LINE L1 -10 1338 1209 13779 130 61 3 chr11 8514249 8516532 -140266940 + Tigger1 DNA MER2_type 2 2418 0 2245 121 28 25 chr11 8516953 8517316 -140266156 + THE1B LTR MaLR 1 364 0 11707 88 14 6 chr11 8517316 8517375 -140266097 + THE1B-int LTR MaLR 1 58 -1522 2179 127 0 0 chr11 8517375 8517667 -140265805 - AluSc SINE Alu -17 292 1 11707 88 14 6 chr11 8517667 8519175 -140264297 + THE1B-int LTR MaLR 58 1580 0 2209 137 19 25 chr11 8519175 8519541 -140263931 + THE1B LTR MaLR 1 364 0 565 264 104 14 chr11 8521919 8522283 -140261189 - L1MEc LINE L1 -4943 1453 1057 23 33 0 0 chr11 8522285 8522315 -140261157 + AT_rich Low_complexity Low_complexity 1 30 0 3813 229 47 9 chr11 8522341 8523239 -140260233 - L1MEc LINE L1 -5430 966 35 207 322 20 72 chr11 8523875 8524027 -140259445 + L3 LINE CR1 843 986 -591 998 238 116 47 chr11 8524200 8524519 -140258953 + MER58B DNA MER1_type 1 341 0 345 343 98 59 chr11 8524600 8525108 -140258364 + L2 LINE L2 2732 3272 0 1483 127 139 11 chr11 8525688 8525955 -140257517 - L1MC1 LINE L1 -8 6325 6025 317 200 167 22 chr11 8526064 8526154 -140257318 - MIR SINE MIR -57 151 49 2210 90 0 10 chr11 8526306 8526596 -140256876 - AluY SINE Alu -24 287 1 448 262 93 0 chr11 8528060 8528167 -140255305 + L2 LINE L2 3197 3313 0 22 0 0 0 chr11 8528719 8528741 -140254731 + AT_rich Low_complexity Low_complexity 1 22 0 1529 164 13 34 chr11 8529324 8529622 -140253850 - AluJb SINE Alu -20 292 1 2070 128 7 0 chr11 8529909 8530199 -140253273 - AluSx SINE Alu -20 292 1 3123 189 22 84 chr11 8530310 8531245 -140252227 - L1ME1 LINE L1 -2 6176 5318 427 255 204 4 chr11 8531233 8531464 -140252008 - L1ME1 LINE L1 -2232 3914 3638 * 6821 69 20 9 chr11 8531555 8532330 -140251142 - L1PA7 LINE L1 -2 6152 5361 15285 30 4 0 chr11 8532330 8534923 -140248549 - L1PA4 LINE L1 -1 6154 3550 6821 69 20 9 chr11 8534923 8535582 -140247890 - L1PA7 LINE L1 -793 5361 4711 432 127 0 14 chr11 8535687 8535758 -140247714 + L1P LINE L1 4602 4671 -1475 237 308 28 22 chr11 8535848 8536030 -140247442 - L1ME1 LINE L1 -2664 3482 3300 579 269 0 7 chr11 8536095 8536236 -140247236 - L2 LINE L2 -2 3311 3172 299 268 37 0 chr11 8536313 8536395 -140247077 + MIR SINE MIR 149 233 -29 538 289 98 100 chr11 8536495 8536605 -140246867 - L1ME1 LINE L1 -2931 3215 3106 1480 187 20 47 chr11 8536605 8536905 -140246567 - AluJo SINE Alu -13 299 8 538 289 98 100 chr11 8536905 8537375 -140246097 - L1ME1 LINE L1 -3040 3106 2636 1438 151 94 51 chr11 8537506 8537857 -140245615 - L1ME2 LINE L1 0 6164 5799 357 93 0 0 chr11 8538560 8538614 -140244858 + (TG)n Simple_repeat Simple_repeat 2 55 0 335 250 30 50 chr11 8538677 8538777 -140244695 + MIR SINE MIR 79 176 -86 1677 184 3 20 chr11 8538972 8539271 -140244201 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 8540018 8540048 -140243424 + AT_rich Low_complexity Low_complexity 1 30 0 336 360 75 18 chr11 8540443 8540721 -140242751 + L2 LINE L2 2451 2744 -570 245 116 58 0 chr11 8540744 8540813 -140242659 + (TA)n Simple_repeat Simple_repeat 1 73 0 204 40 0 0 chr11 8540834 8540859 -140242613 + (GCATG)n Simple_repeat Simple_repeat 3 27 0 250 325 133 21 chr11 8541262 8541450 -140242022 + L2 LINE L2 3104 3312 -1 2175 123 0 0 chr11 8543633 8543934 -140239538 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr11 8544441 8544468 -140239004 + AT_rich Low_complexity Low_complexity 1 27 0 270 304 87 9 chr11 8545572 8545687 -140237785 + L2 LINE L2 3163 3286 -27 907 260 115 11 chr11 8545821 8546090 -140237382 + MLT1J LTR MaLR 156 452 -59 215 281 62 0 chr11 8546255 8546319 -140237153 - L2 LINE L2 -4 3309 3242 2011 92 18 95 chr11 8546361 8546688 -140236784 - AluSc SINE Alu -7 302 1 1596 298 63 21 chr11 8546692 8547266 -140236206 - L2 LINE L2 -606 2708 2111 238 309 0 15 chr11 8548356 8548424 -140235048 + MER5A DNA MER1_type 123 189 0 248 294 59 73 chr11 8548497 8548633 -140234839 - L2 LINE L2 0 3272 3139 2389 87 0 0 chr11 8549466 8549764 -140233708 + AluSg SINE Alu 1 298 -12 293 319 142 35 chr11 8549832 8549973 -140233499 - L2 LINE L2 0 3272 3117 1086 94 29 12 chr11 8550063 8550233 -140233239 - MER30 DNA MER1_type -57 173 1 1600 202 84 33 chr11 8551475 8552080 -140231392 - Charlie2 DNA MER1_type -225 2637 2002 639 313 45 38 chr11 8552778 8553485 -140229987 + HAL1 LINE L1 958 1669 -838 257 313 88 0 chr11 8553842 8554059 -140229413 + L1ME2 LINE L1 3038 3273 -2873 429 136 0 0 chr11 8554060 8554119 -140229353 + AluS SINE Alu 2 60 -258 2088 127 64 11 chr11 8554119 8554496 -140228976 + LTR1 LTR ERV1 34 430 -355 1072 176 20 20 chr11 8556574 8556773 -140226699 - MER58A DNA MER1_type 0 224 26 244 187 0 44 chr11 8557662 8557753 -140225719 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 524 286 32 68 chr11 8558046 8558298 -140225174 + L3 LINE CR1 1330 1572 -5 183 80 0 0 chr11 8558383 8558408 -140225064 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 2291 125 0 0 chr11 8559089 8559401 -140224071 + AluSx SINE Alu 1 312 0 605 264 181 0 chr11 8559862 8560078 -140223394 + MIR SINE MIR 6 260 -2 394 320 76 20 chr11 8560338 8560535 -140222937 + MLT1H LTR MaLR 50 257 -292 2420 169 37 13 chr11 8560709 8561216 -140222256 + MER68 LTR ERV1 1 562 0 530 234 58 21 chr11 8561645 8561833 -140221639 - L1MEc LINE L1 -4432 2289 2095 1124 255 91 0 chr11 8561854 8562238 -140221234 - L1MEc LINE L1 -4727 1813 1395 5795 224 68 43 chr11 8562247 8563692 -140219780 + L1ME2 LINE L1 3365 4773 -1391 2679 39 0 3 chr11 8563692 8564001 -140219471 - AluY SINE Alu -3 308 1 5795 224 68 43 chr11 8564001 8564708 -140218764 + L1ME2 LINE L1 4773 5461 -703 2106 113 14 0 chr11 8564708 8564999 -140218473 - AluY SINE Alu -16 295 1 5795 224 68 43 chr11 8564999 8565581 -140217891 + L1ME2 LINE L1 5461 6164 0 1053 244 76 21 chr11 8566451 8566779 -140216693 + L1MC4a LINE L1 5595 5940 -1868 2665 90 28 3 chr11 8566797 8567152 -140216320 - THE1B LTR MaLR 0 364 1 324 161 0 16 chr11 8567157 8567219 -140216253 + MER116 DNA Mariner 1 61 -19 22 0 0 0 chr11 8571695 8571717 -140211755 + AT_rich Low_complexity Low_complexity 1 22 0 660 259 74 26 chr11 8572278 8572548 -140210924 + LTR33 LTR ERVL 1 283 -238 663 225 34 98 chr11 8574180 8574416 -140209056 - MIR SINE MIR -9 253 33 2552 44 3 0 chr11 8575694 8575987 -140207485 + AluY SINE Alu 1 294 -17 427 212 18 26 chr11 8576009 8576122 -140207350 - L2 LINE L2 -2 3311 3200 662 285 163 30 chr11 8576361 8576787 -140206685 - L2 LINE L2 -467 2847 2341 4368 171 55 39 chr11 8576787 8577726 -140205746 - LTR13 LTR ERVK 0 954 1 662 285 163 30 chr11 8577726 8577808 -140205664 - L2 LINE L2 -973 2341 2271 383 289 161 12 chr11 8578256 8578598 -140204874 - L3 LINE CR1 -42 1535 1143 2375 115 42 0 chr11 8580497 8580854 -140202618 - L1PB3 LINE L1 0 6154 5783 542 299 43 9 chr11 8581153 8581364 -140202108 + MIR SINE MIR 1 218 -44 338 87 0 0 chr11 8581506 8581552 -140201920 - AluJo SINE Alu -10 292 247 1542 151 0 20 chr11 8581618 8581863 -140201609 - AluJo SINE Alu -72 240 1 371 266 65 43 chr11 8581865 8582004 -140201468 - HAL1 LINE L1 -2135 372 231 30 27 0 0 chr11 8582113 8582150 -140201322 + AT_rich Low_complexity Low_complexity 1 37 0 1214 8 0 0 chr11 8582306 8582438 -140201034 - AluYb8 SINE Alu -8 310 179 267 317 35 95 chr11 8582438 8582551 -140200921 - L1MEd LINE L1 -5549 570 452 2193 111 7 13 chr11 8582551 8582849 -140200623 - AluSp SINE Alu -17 296 1 267 317 35 95 chr11 8582849 8583082 -140200390 - L1MEd LINE L1 -5667 452 245 339 319 89 51 chr11 8583748 8584118 -140199354 - LTR67 LTR ERVL -138 419 36 1794 218 14 6 chr11 8584412 8584775 -140198697 - MLT2D LTR ERVL -48 366 1 496 267 247 28 chr11 8585359 8585971 -140197501 - L2 LINE L2 -248 3065 2325 2230 164 3 8 chr11 8586239 8586604 -140196868 + MLT1A1 LTR MaLR 3 365 0 22 0 0 0 chr11 8587368 8587390 -140196082 + AT_rich Low_complexity Low_complexity 1 22 0 1230 285 72 4 chr11 8587656 8588115 -140195357 - L2 LINE L2 0 3313 2824 201 305 0 0 chr11 8589832 8589891 -140193581 - MIR SINE MIR -63 145 87 225 336 74 13 chr11 8589978 8590127 -140193345 - L2 LINE L2 -210 3062 2905 2581 59 0 0 chr11 8590685 8590988 -140192484 - AluY SINE Alu -8 303 1 2212 168 12 22 chr11 8591261 8591661 -140191811 + MSTD LTR MaLR 1 396 0 241 298 116 46 chr11 8592437 8592850 -140190622 - L2 LINE L2 -495 2819 2378 2133 109 7 0 chr11 8594357 8594669 -140188803 - AluSx SINE Alu 0 314 1 198 333 70 0 chr11 8595211 8595325 -140188147 + MIR SINE MIR 22 143 -65 3700 176 66 18 chr11 8595391 8596103 -140187369 - LTR39 LTR ERV1 0 783 38 796 215 25 0 chr11 8596106 8596269 -140187203 - MIR SINE MIR -23 239 73 1560 211 82 26 chr11 8597239 8597692 -140185780 - L1ME LINE L1 -480 5686 5185 2000 146 0 3 chr11 8597692 8597993 -140185479 - AluJb SINE Alu -12 300 1 1560 211 82 26 chr11 8597993 8598217 -140185255 - L1ME LINE L1 -981 5185 4975 296 262 37 19 chr11 8598322 8598429 -140185043 - HAL1b LINE L1 -49 1299 1191 670 83 4 78 chr11 8598533 8598800 -140184672 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 8598865 8598886 -140184586 + AT_rich Low_complexity Low_complexity 1 21 0 325 287 86 17 chr11 8599667 8599841 -140183631 - L1ME LINE L1 -1227 4919 4734 480 310 139 24 chr11 8599931 8600218 -140183254 - L1ME LINE L1 -1515 4631 4312 345 293 40 30 chr11 8600276 8600474 -140182998 - L1ME LINE L1 -1924 4222 4023 376 338 88 7 chr11 8600497 8600645 -140182827 - L1ME LINE L1 -2275 3871 3712 455 33 16 0 chr11 8601242 8601303 -140182169 + (CA)n Simple_repeat Simple_repeat 2 63 0 312 275 83 25 chr11 8601480 8601600 -140181872 - L1MC4 LINE L1 -1335 6707 6581 265 191 33 40 chr11 8601609 8601761 -140181711 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 358 202 0 101 chr11 8601764 8601863 -140181609 - L1MC4 LINE L1 -1340 6702 6614 353 204 0 112 chr11 8601775 8601873 -140181599 + L1MC4 LINE L1 6617 6703 -1339 * 250 233 17 0 chr11 8601905 8601965 -140181507 + L1M4 LINE L1 2957 3017 -3129 591 222 83 44 chr11 8601970 8602293 -140181179 - MLT1I LTR MaLR -2 407 82 28 0 0 0 chr11 8602441 8602469 -140181003 + AT_rich Low_complexity Low_complexity 1 28 0 3545 96 14 0 chr11 8602537 8603047 -140180425 - Tigger4(Zombi) DNA MER2_type -3 2728 2212 461 195 0 0 chr11 8603052 8603134 -140180338 - Tigger4(Zombi) DNA MER2_type -2649 82 1 26 0 0 0 chr11 8603200 8603226 -140180246 + AT_rich Low_complexity Low_complexity 1 26 0 1671 99 4 0 chr11 8603511 8603744 -140179728 + L1PA11 LINE L1 5939 6172 -2 232 222 0 28 chr11 8603833 8603905 -140179567 + (TA)n Simple_repeat Simple_repeat 2 71 0 43 20 0 0 chr11 8603949 8603999 -140179473 + AT_rich Low_complexity Low_complexity 1 50 0 808 279 150 19 chr11 8605742 8606278 -140177194 + L2 LINE L2 2685 3313 0 207 362 103 0 chr11 8606399 8606515 -140176957 - L2 LINE L2 -6 3266 3139 258 227 61 0 chr11 8606600 8606666 -140176806 - L2 LINE L2 -86 3227 3158 284 315 18 45 chr11 8606678 8606789 -140176683 + MIR SINE MIR 71 178 -84 * 389 274 44 15 chr11 8606774 8606909 -140176563 - MIR3 SINE MIR -38 170 32 480 252 42 8 chr11 8607289 8607408 -140176064 - L2 LINE L2 -11 3302 3180 577 178 68 0 chr11 8607684 8607830 -140175642 + L1MB8 LINE L1 6017 6172 -6 335 254 36 7 chr11 8607830 8607968 -140175504 + L1MC4a LINE L1 4904 5045 -1101 729 312 96 35 chr11 8608135 8608740 -140174732 + L1MC4a LINE L1 5256 5897 -1911 903 176 0 48 chr11 8608893 8609058 -140174414 + FRAM SINE Alu 1 156 -20 502 286 121 57 chr11 8609160 8609598 -140173874 + L2 LINE L2 2567 3029 -243 182 37 37 0 chr11 8610730 8610757 -140172715 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 290 252 99 46 chr11 8611085 8611236 -140172236 + MLT1J2 LTR MaLR 1 159 -291 2137 142 0 3 chr11 8612985 8613294 -140170178 + AluSx SINE Alu 1 308 -4 229 241 102 77 chr11 8613494 8613768 -140169704 + L2 LINE L2 2472 2752 -562 * 630 283 23 39 chr11 8613758 8614020 -140169452 - MIR SINE MIR 0 262 6 1446 260 94 15 chr11 8614055 8614563 -140168909 + L2 LINE L2 2780 3312 -1 238 328 39 8 chr11 8614569 8614697 -140168775 + L2 LINE L2 2919 3050 -222 388 325 33 8 chr11 8615133 8615253 -140168219 - MER91C DNA MER1_type 0 140 18 548 291 35 35 chr11 8615864 8616063 -140167409 - MIR SINE MIR -56 206 8 884 270 103 71 chr11 8617177 8617486 -140165986 - L2 LINE L2 -297 3016 2675 2297 113 7 0 chr11 8617486 8617796 -140165676 + AluSx SINE Alu 1 312 0 884 270 103 71 chr11 8617796 8617973 -140165499 - L2 LINE L2 -638 2675 2505 229 237 158 0 chr11 8618156 8618232 -140165240 - MIR SINE MIR -167 95 8 421 274 103 0 chr11 8618699 8618816 -140164656 - MIR SINE MIR -106 156 28 213 256 122 24 chr11 8618907 8618989 -140164483 + L2 LINE L2 3142 3231 -41 937 227 77 57 chr11 8618996 8619243 -140164229 - MIR SINE MIR -10 252 1 541 311 99 77 chr11 8619280 8619734 -140163738 - L2 LINE L2 -4 3268 2805 441 54 0 0 chr11 8619743 8619799 -140163673 + (CA)n Simple_repeat Simple_repeat 2 57 0 266 210 0 16 chr11 8620584 8620646 -140162826 + C-rich Low_complexity Low_complexity 3 63 0 228 67 0 0 chr11 8620676 8620706 -140162766 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 180 111 0 0 chr11 8622004 8622031 -140161441 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 210 329 13 0 chr11 8622055 8622134 -140161338 + (TCCA)n Simple_repeat Simple_repeat 3 82 0 224 264 11 0 chr11 8622145 8622232 -140161240 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 220 213 21 0 chr11 8622335 8622382 -140161090 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 235 140 0 0 chr11 8622457 8622507 -140160965 + LTR66 LTR ERVL 394 443 -167 603 27 0 0 chr11 8625205 8625278 -140158194 + (CA)n Simple_repeat Simple_repeat 2 74 0 385 228 185 0 chr11 8625391 8625483 -140157989 - MER91A DNA MER1_type -86 110 2 237 279 38 0 chr11 8627085 8627164 -140156308 - MER94 DNA DNA -26 108 27 519 281 0 0 chr11 8627292 8627438 -140156034 + L1ME3 LINE L1 5969 6114 -48 181 184 0 53 chr11 8627460 8627498 -140155974 - L2 LINE L2 -68 3204 3169 415 238 48 0 chr11 8627509 8627614 -140155858 + MIR SINE MIR 56 165 -97 186 323 62 0 chr11 8627612 8627677 -140155795 + L2 LINE L2 3141 3209 -63 * 328 327 93 0 chr11 8629531 8629681 -140153791 + MIR SINE MIR 74 237 -25 233 308 191 48 chr11 8630437 8630752 -140152720 + L2 LINE L2 2602 2961 -353 292 311 14 54 chr11 8630829 8630977 -140152495 + MLT1K LTR MaLR 145 286 -302 314 241 0 25 chr11 8631320 8631399 -140152073 + L1ME3A LINE L1 5886 5962 -208 1392 131 9 9 chr11 8631476 8631697 -140151775 - MER1B DNA MER1_type -76 221 1 366 241 82 132 chr11 8631700 8631801 -140151671 + L1ME3A LINE L1 5962 6048 -122 2292 84 0 32 chr11 8631801 8632111 -140151361 - AluY SINE Alu -11 300 1 366 241 82 132 chr11 8632111 8632229 -140151243 + L1ME3A LINE L1 6048 6170 0 1046 147 0 0 chr11 8632368 8632545 -140150927 - AluSg/x SINE Alu 0 310 134 2297 101 3 0 chr11 8632545 8632842 -140150630 - AluSp SINE Alu -14 299 2 312 283 38 0 chr11 8632934 8633040 -140150432 - L1MEd LINE L1 -3563 2566 2457 425 323 44 34 chr11 8633400 8633563 -140149909 - L1MEd LINE L1 -4887 1232 1072 360 64 0 0 chr11 8633563 8633610 -140149862 + (TG)n Simple_repeat Simple_repeat 2 48 0 425 323 44 34 chr11 8633610 8633830 -140149642 - L1MEd LINE L1 -5047 1072 845 205 197 30 15 chr11 8634021 8634087 -140149385 + CT-rich Low_complexity Low_complexity 6 72 0 246 81 0 0 chr11 8637027 8637064 -140146408 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 240 310 121 14 chr11 8637314 8637473 -140145999 + MIR SINE MIR 19 205 -3 210 344 16 24 chr11 8638229 8638354 -140145118 + L2 LINE L2 2248 2371 -943 2252 117 0 0 chr11 8638714 8639013 -140144459 - AluSx SINE Alu -13 299 1 439 229 31 0 chr11 8639609 8639726 -140143746 + MIR SINE MIR 46 164 -54 1946 127 0 0 chr11 8640011 8640270 -140143202 - AluSq SINE Alu -54 259 1 6190 187 21 14 chr11 8640270 8640286 -140143186 - L1P5 LINE L1 -679 5475 5461 4485 101 0 9 chr11 8640286 8640929 -140142543 + L1PA13 LINE L1 5523 6159 -4 6190 187 21 14 chr11 8640929 8641834 -140141638 - L1P5 LINE L1 -693 5461 4537 2543 114 2 53 chr11 8641834 8642003 -140141469 + THE1C LTR MaLR 1 177 -198 2221 82 4 0 chr11 8642003 8642295 -140141177 - AluSp SINE Alu 0 309 17 2543 114 2 53 chr11 8642295 8642519 -140140953 + THE1C LTR MaLR 177 375 0 6190 187 21 14 chr11 8642519 8643225 -140140247 - L1P5 LINE L1 -1617 4537 3837 2251 110 3 3 chr11 8643707 8644007 -140139465 + AluSc SINE Alu 1 300 -9 1459 137 26 72 chr11 8644601 8644908 -140138564 - THE1C LTR MaLR 0 375 83 1169 219 19 107 chr11 8645799 8646209 -140137263 + MLT1A2 LTR MaLR 1 374 0 1100 220 49 20 chr11 8647190 8647494 -140135978 + MLT1H LTR MaLR 51 363 -186 1818 126 61 0 chr11 8648379 8648673 -140134799 + AluJo SINE Alu 1 312 0 830 148 15 11 chr11 8648673 8648943 -140134529 + GA-rich Low_complexity Low_complexity 1 271 0 454 312 158 44 chr11 8648954 8648995 -140134477 - L3 LINE CR1 -203 1374 1339 1564 208 80 49 chr11 8648995 8649447 -140134025 - MLT1C LTR MaLR 0 467 2 454 312 158 44 chr11 8649447 8649950 -140133522 - L3 LINE CR1 -238 1339 768 1737 167 3 7 chr11 8650050 8650344 -140133128 + AluJo SINE Alu 1 293 -19 333 0 0 0 chr11 8651214 8651251 -140132221 + (CA)n Simple_repeat Simple_repeat 2 38 0 441 312 108 52 chr11 8651256 8651487 -140131985 - L1ME4a LINE L1 -40 6081 5838 213 263 9 53 chr11 8652634 8652748 -140130724 + (TG)n Simple_repeat Simple_repeat 2 110 0 722 247 30 12 chr11 8652748 8652914 -140130558 + MIR SINE MIR 52 220 -42 195 269 0 103 chr11 8652938 8653016 -140130456 + L2 LINE L2 2956 3025 -247 212 235 39 69 chr11 8653948 8654050 -140129422 - MIR SINE MIR -71 137 39 352 322 91 77 chr11 8654293 8654579 -140128893 + L2 LINE L2 2982 3271 -1 234 128 0 0 chr11 8654588 8654627 -140128845 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 198 167 167 69 chr11 8655392 8655464 -140128008 + MIR SINE MIR 75 153 -55 753 189 51 0 chr11 8655656 8655831 -140127641 + L1ME3 LINE L1 5647 5830 -332 3747 199 33 21 chr11 8655837 8656695 -140126777 + Tigger6a DNA MER2_type 2 869 -214 1687 167 16 16 chr11 8657302 8657432 -140126040 + AluJo SINE Alu 1 130 -182 288 0 0 0 chr11 8657432 8657464 -140126008 + (CA)n Simple_repeat Simple_repeat 2 33 0 1687 167 16 16 chr11 8657464 8657645 -140125827 + AluJo SINE Alu 129 312 0 905 231 52 0 chr11 8657645 8657870 -140125602 - MIR SINE MIR -6 256 17 319 317 106 0 chr11 8658638 8658761 -140124711 - L2 LINE L2 -1 3271 3136 304 283 151 52 chr11 8658866 8659138 -140124334 - L2 LINE L2 -491 2823 2525 191 414 29 10 chr11 8659142 8659246 -140124226 - MIR SINE MIR 0 262 157 652 271 9 32 chr11 8659248 8659469 -140124003 - LTR33 LTR ERVL -2 519 304 1154 267 41 26 chr11 8660595 8660984 -140122488 - MLT1I LTR MaLR 0 409 15 2632 107 5 29 chr11 8661451 8661835 -140121637 - THE1C LTR MaLR 0 375 1 197 200 0 0 chr11 8662175 8662210 -140121262 + MIR SINE MIR 75 109 -153 557 278 116 6 chr11 8662357 8662530 -140120942 + MIR SINE MIR 70 261 -1 464 210 63 145 chr11 8662857 8663184 -140120288 + LTR16A1 LTR ERVL 169 457 0 438 368 69 26 chr11 8663239 8663470 -140120002 - MIR SINE MIR -14 248 8 22 35 0 0 chr11 8666010 8666039 -140117433 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr11 8667704 8667747 -140115725 + (CA)n Simple_repeat Simple_repeat 1 43 0 423 207 162 0 chr11 8668539 8668650 -140114822 + MER3 DNA MER1_type 77 205 -4 829 290 68 16 chr11 8668838 8669086 -140114386 + MIR SINE MIR 2 262 0 231 36 0 0 chr11 8669090 8669118 -140114354 + (CACCAT)n Simple_repeat Simple_repeat 6 33 0 1592 242 301 11 chr11 8671884 8672631 -140110841 + L1MC4 LINE L1 6948 7911 -131 2499 184 98 45 chr11 8673686 8674279 -140109193 - MLT1E3 LTR MaLR 0 624 1 565 179 8 15 chr11 8676042 8676176 -140107296 + CT-rich Low_complexity Low_complexity 4 136 0 1107 220 43 28 chr11 8676527 8676854 -140106618 - L1ME3 LINE L1 0 6162 5831 521 222 28 49 chr11 8676854 8676998 -140106474 - Tigger6 DNA MER2_type -3 1594 1454 196 254 85 0 chr11 8677723 8677782 -140105690 + MIR SINE MIR 84 147 -61 295 297 70 62 chr11 8677905 8678033 -140105439 + MIR SINE MIR 28 147 -61 347 257 55 9 chr11 8678112 8678221 -140105251 - L2 LINE L2 -1 3312 3199 231 103 0 0 chr11 8679599 8679638 -140103834 + (CAGT)n Simple_repeat Simple_repeat 4 42 0 238 321 37 55 chr11 8679763 8679872 -140103600 - MIR3 SINE MIR -12 196 90 1144 306 50 21 chr11 8680380 8680861 -140102611 - L2 LINE L2 -2 3311 2817 24 0 0 0 chr11 8680893 8680917 -140102555 + GC_rich Low_complexity Low_complexity 1 24 0 194 304 194 44 chr11 8682067 8682294 -140101178 + L2 LINE L2 2985 3245 -27 195 313 104 17 chr11 8682485 8682600 -140100872 + MIR SINE MIR 16 140 -68 1145 172 66 66 chr11 8682616 8682935 -140100537 + MER33 DNA MER1_type 6 324 0 223 271 188 24 chr11 8684573 8684658 -140098814 + MIR SINE MIR 44 142 -66 230 297 0 0 chr11 8686107 8686181 -140097291 - MIR SINE MIR -67 141 68 901 264 17 13 chr11 8687056 8687287 -140096185 - MIR SINE MIR 0 262 31 639 313 42 32 chr11 8687583 8687800 -140095672 - MIR SINE MIR -19 243 25 212 241 0 19 chr11 8687813 8687867 -140095605 + GA-rich Low_complexity Low_complexity 4 56 0 182 65 65 0 chr11 8688000 8688031 -140095441 + GA-rich Low_complexity Low_complexity 3 35 0 205 74 0 0 chr11 8691223 8691250 -140092222 - L2 LINE L2 -15 3257 3231 342 123 0 0 chr11 8691990 8692047 -140091425 + (CA)n Simple_repeat Simple_repeat 2 58 0 388 250 107 0 chr11 8692091 8692203 -140091269 + MER63 DNA MER1_type 1 750 -86 254 274 27 0 chr11 8692530 8692603 -140090869 + L3 LINE CR1 1415 1489 -88 21 36 0 0 chr11 8693093 8693121 -140090351 + AT_rich Low_complexity Low_complexity 1 28 0 1807 157 30 10 chr11 8693121 8693426 -140090046 + AluJo SINE Alu 1 311 -1 828 281 49 20 chr11 8693484 8693730 -140089742 + MIR SINE MIR 2 254 -8 596 254 24 24 chr11 8693756 8693921 -140089551 - MIR SINE MIR -48 214 50 242 208 38 0 chr11 8694531 8694584 -140088888 - MER45 DNA AcHobo 0 1581 1527 * 1290 259 76 81 chr11 8694579 8695170 -140088302 - MER45C DNA AcHobo -320 633 46 230 309 93 32 chr11 8695341 8695587 -140087885 + L2 LINE L2 2823 3083 -189 195 69 0 0 chr11 8695815 8695844 -140087628 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 187 257 17 149 chr11 8695950 8696125 -140087347 - L2 LINE L2 -437 2877 2726 2169 133 9 35 chr11 8696156 8696502 -140086970 - MER1B DNA MER1_type 0 337 1 482 326 100 48 chr11 8697735 8698604 -140084868 + L2 LINE L2 2027 2940 -374 440 310 111 10 chr11 8698613 8699089 -140084383 - L2 LINE L2 -18 3254 2380 501 330 85 13 chr11 8699139 8699375 -140084097 - MIR SINE MIR -5 257 5 23 33 0 0 chr11 8700309 8700339 -140083133 + AT_rich Low_complexity Low_complexity 1 30 0 816 302 65 40 chr11 8700450 8701034 -140082438 - L1M4 LINE L1 -2027 4119 3551 3568 136 14 2 chr11 8701034 8701586 -140081886 - L1MB2 LINE L1 0 6171 5613 816 302 65 40 chr11 8701586 8702249 -140081223 - L1M4 LINE L1 -2595 3551 2841 409 344 21 4 chr11 8702241 8702482 -140080990 - L1M4 LINE L1 -3771 2375 2131 * 351 337 26 0 chr11 8703272 8703462 -140080010 - L1M4 LINE L1 -3782 2364 2170 523 292 54 6 chr11 8703748 8703916 -140079556 - MER91A DNA MER1_type 0 196 21 297 100 0 0 chr11 8705138 8705188 -140078284 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr11 8705652 8705675 -140077797 + GC_rich Low_complexity Low_complexity 1 23 0 631 194 82 47 chr11 8706455 8706625 -140076847 + MER69A DNA AcHobo 2 177 0 483 248 9 9 chr11 8706864 8706973 -140076499 - MER81 DNA DNA 0 114 6 507 294 39 10 chr11 8708907 8709111 -140074361 - MIR SINE MIR -33 229 20 2181 113 0 3 chr11 8709275 8709585 -140073887 + AluSg SINE Alu 1 309 -1 521 142 25 67 chr11 8709729 8709849 -140073623 + L2 LINE L2 3193 3307 -6 186 133 0 0 chr11 8710572 8710602 -140072870 + (TCTCCC)n Simple_repeat Simple_repeat 4 33 0 29 47 0 0 chr11 8710983 8711026 -140072446 + GC_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr11 8711086 8711124 -140072348 + GC_rich Low_complexity Low_complexity 1 38 0 192 167 0 0 chr11 8712108 8712138 -140071334 - MIR SINE MIR -152 110 81 201 355 32 21 chr11 8716157 8716250 -140067222 + MIR SINE MIR 111 204 -58 957 222 53 0 chr11 8717010 8717199 -140066273 - MER63A DNA MER1_type -11 199 1 286 141 306 0 chr11 8717795 8717880 -140065592 + MIR SINE MIR 37 147 -61 2625 26 0 0 chr11 8718070 8718373 -140065099 + AluY SINE Alu 1 303 -8 1653 241 109 47 chr11 8718395 8718680 -140064792 - MLT1H LTR MaLR 0 549 283 1707 167 21 0 chr11 8718680 8718961 -140064511 - AluJb SINE Alu -19 293 7 1653 241 109 47 chr11 8718961 8719190 -140064282 - MLT1H LTR MaLR -266 283 3 820 274 15 0 chr11 8719190 8719391 -140064081 - MIR SINE MIR -51 211 8 1579 224 151 48 chr11 8721248 8721784 -140061688 - MLT1E LTR MaLR 0 593 3 315 283 29 27 chr11 8721903 8722048 -140061424 - MIR SINE MIR -62 146 54 697 166 0 11 chr11 8722148 8722329 -140061143 + (CA)n Simple_repeat Simple_repeat 2 180 0 466 251 17 11 chr11 8722340 8722519 -140060953 + (CA)n Simple_repeat Simple_repeat 1 180 0 449 259 0 9 chr11 8722866 8722982 -140060490 + MIR SINE MIR 24 138 -70 188 280 20 0 chr11 8723320 8723370 -140060102 - MIR SINE MIR -104 158 108 452 119 0 83 chr11 8724562 8724646 -140058826 - L1PA16 LINE L1 -33 6133 6057 289 27 0 0 chr11 8724647 8724684 -140058788 - L1PA16 LINE L1 -185 5981 5945 271 391 8 16 chr11 8724685 8724813 -140058659 - L2 LINE L2 -556 2758 2632 308 252 36 54 chr11 8726026 8726137 -140057335 + MIR SINE MIR 16 124 -138 3361 151 23 11 chr11 8727469 8728011 -140055461 - L1MB7 LINE L1 -8 6176 5625 2755 122 39 0 chr11 8728011 8728421 -140055051 + MSTB LTR MaLR 1 426 0 3361 151 23 11 chr11 8728421 8728447 -140055025 - L1MB7 LINE L1 -559 5625 5601 188 280 43 43 chr11 8728584 8728677 -140054795 + MIR SINE MIR 88 180 -82 515 314 42 11 chr11 8728712 8728903 -140054569 - MIR SINE MIR -50 212 16 457 376 44 0 chr11 8729005 8729186 -140054286 + MIR SINE MIR 70 258 -4 323 354 23 8 chr11 8730505 8730635 -140052837 - L3 LINE CR1 -505 1072 941 521 294 213 41 chr11 8732277 8733105 -140050367 - L2 LINE L2 -59 3254 2311 2365 154 3 8 chr11 8733362 8733726 -140049746 + MLT1A1 LTR MaLR 4 365 0 194 139 0 28 chr11 8734246 8734282 -140049190 + L2 LINE L2 3217 3251 -21 674 277 55 17 chr11 8735015 8735253 -140048219 + MIR SINE MIR 15 261 -1 2050 209 45 54 chr11 8735299 8735489 -140047983 - L1ME3 LINE L1 0 6162 5972 2478 60 0 0 chr11 8735489 8735791 -140047681 - AluY SINE Alu -5 306 5 2050 209 45 54 chr11 8735791 8736156 -140047316 - L1ME3 LINE L1 -190 5972 5612 377 308 258 0 chr11 8736188 8736370 -140047102 - MIR SINE MIR -27 235 7 366 194 74 74 chr11 8737361 8737469 -140046003 - L2 LINE L2 -5 3308 3201 194 368 0 0 chr11 8737628 8737704 -140045768 + MIR SINE MIR 2 77 -185 1578 143 3 52 chr11 8737704 8737991 -140045481 + AluJb SINE Alu 26 298 -14 246 328 128 8 chr11 8738328 8738453 -140045019 - MIR SINE MIR -45 217 78 2054 196 54 41 chr11 8738454 8738989 -140044483 + L1MC4 LINE L1 7501 8042 0 255 350 55 21 chr11 8739076 8739295 -140044177 - MIR SINE MIR -29 233 6 205 313 0 10 chr11 8740421 8740517 -140042955 + GA-rich Low_complexity Low_complexity 1 95 0 381 260 142 18 chr11 8742103 8742272 -140041200 + MIR3 SINE MIR 12 201 -7 185 293 85 0 chr11 8744445 8744527 -140038945 + MIR SINE MIR 76 164 -98 1857 149 7 7 chr11 8744996 8745292 -140038180 + AluJb SINE Alu 1 296 -16 219 300 0 0 chr11 8745928 8745998 -140037474 + L3 LINE CR1 1399 1468 -109 236 274 110 48 chr11 8746030 8746176 -140037296 - MIR SINE MIR -32 230 76 838 125 8 23 chr11 8746220 8746348 -140037124 + AluSq/x SINE Alu 6 131 -182 2250 86 0 17 chr11 8746969 8747271 -140036201 + AluSc SINE Alu 1 297 -12 350 294 10 93 chr11 8747522 8747716 -140035756 + MIR3 SINE MIR 1 178 -30 2133 123 0 0 chr11 8748476 8748776 -140034696 - AluSx SINE Alu -12 300 1 780 339 62 21 chr11 8749032 8749285 -140034187 + L2 LINE L2 78 358 -2956 2299 97 3 0 chr11 8749285 8749593 -140033879 - AluSc SINE Alu 0 309 1 780 339 62 21 chr11 8749593 8749775 -140033697 + L2 LINE L2 358 531 -2783 405 89 18 0 chr11 8749779 8749835 -140033637 + Alu SINE Alu 2 58 -260 584 199 60 12 chr11 8749977 8750143 -140033329 + MIR SINE MIR 84 257 -5 365 276 31 0 chr11 8750174 8750272 -140033200 - MIR SINE MIR -82 180 80 288 287 17 40 chr11 8751047 8751206 -140032266 + (TATATG)n Simple_repeat Simple_repeat 1 157 -13 1978 85 6 82 chr11 8751206 8751523 -140031949 - AluSx SINE Alu -19 293 1 288 287 17 40 chr11 8751523 8751537 -140031935 + (TATATG)n Simple_repeat Simple_repeat 157 170 0 2160 90 30 10 chr11 8752303 8752604 -140030868 - AluSg1 SINE Alu -2 307 1 215 231 0 19 chr11 8753141 8753193 -140030279 + (CCTG)n Simple_repeat Simple_repeat 3 53 0 188 214 0 54 chr11 8754045 8754101 -140029371 - L2 LINE L2 -66 3206 3154 234 277 53 21 chr11 8754421 8754515 -140028957 + L2 LINE L2 3137 3233 -39 210 35 0 105 chr11 8754649 8754706 -140028766 + (CCCCAG)n Simple_repeat Simple_repeat 1 51 0 231 36 0 0 chr11 8754761 8754789 -140028683 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 345 257 7 44 chr11 8757409 8757545 -140025927 + GA-rich Low_complexity Low_complexity 4 134 0 520 312 28 42 chr11 8757607 8757822 -140025650 + MIR SINE MIR 2 213 -49 302 264 85 12 chr11 8758128 8758267 -140025205 - MIR SINE MIR -52 156 2 310 310 38 32 chr11 8758813 8758971 -140024501 - L2 LINE L2 -35 3278 3120 300 258 153 0 chr11 8759029 8759153 -140024319 - MIR3 SINE MIR -37 171 29 524 314 0 0 chr11 8759724 8759899 -140023573 + (CGAGG)n Simple_repeat Simple_repeat 5 179 0 189 355 187 16 chr11 8763321 8763572 -140019900 - L3 LINE CR1 -926 651 358 275 260 0 0 chr11 8763573 8763646 -140019826 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 229 253 26 148 chr11 8763684 8763913 -140019559 - L2 LINE L2 -74 3198 2998 1306 177 56 16 chr11 8764183 8764432 -140019040 + AluJo SINE Alu 1 259 -53 480 292 153 19 chr11 8765371 8765587 -140017885 + MLT1L LTR MaLR 371 615 0 281 317 8 8 chr11 8766387 8766510 -140016962 + CT-rich Low_complexity Low_complexity 5 127 0 1555 110 0 31 chr11 8766982 8767209 -140016263 + L1PA8A LINE L1 5912 6131 0 1700 155 0 14 chr11 8767325 8767602 -140015870 + AluJo SINE Alu 1 273 -39 207 0 0 0 chr11 8767682 8767689 -140015783 + (TC)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 8767689 8767712 -140015760 + (TC)n Simple_repeat Simple_repeat 2 24 0 215 267 43 60 chr11 8767734 8767850 -140015622 - MIR SINE MIR -68 140 27 241 303 56 0 chr11 8768215 8768304 -140015168 + MIR3 SINE MIR 82 175 -33 293 341 48 3 chr11 8768651 8768859 -140014613 + L3 LINE CR1 964 1233 -344 473 299 141 21 chr11 8768873 8769006 -140014466 + MIR SINE MIR 1 117 -145 1889 106 0 72 chr11 8769006 8769327 -140014145 + AluY SINE Alu 1 298 -13 473 299 141 21 chr11 8769327 8769427 -140014045 + MIR SINE MIR 117 262 0 235 260 208 19 chr11 8769440 8769594 -140013878 + L3 LINE CR1 1293 1475 -102 611 211 8 0 chr11 8769655 8769778 -140013694 - L1MA8 LINE L1 -2 6289 6166 775 228 17 22 chr11 8771628 8771808 -140011664 + MER5A DNA MER1_type 4 182 -7 1690 155 11 14 chr11 8772123 8772407 -140011065 - AluJo SINE Alu -16 296 14 211 224 0 35 chr11 8772526 8772584 -140010888 + GA-rich Low_complexity Low_complexity 4 59 0 271 266 13 0 chr11 8775485 8775564 -140007908 + MIR3 SINE MIR 77 156 -52 374 264 119 13 chr11 8776287 8776446 -140007026 - L1MCa LINE L1 -4333 2093 1918 28 29 0 0 chr11 8776446 8776481 -140006991 + AT_rich Low_complexity Low_complexity 1 35 0 2672 20 0 0 chr11 8776577 8776882 -140006590 + AluY SINE Alu 1 305 -6 538 243 76 43 chr11 8777218 8777269 -140006203 - MIR SINE MIR -12 250 202 426 205 0 0 chr11 8777269 8777347 -140006125 - MER116 DNA Mariner -2 78 1 538 243 76 43 chr11 8777347 8777480 -140005992 - MIR SINE MIR -60 202 60 23 0 0 0 chr11 8778353 8778376 -140005096 + AT_rich Low_complexity Low_complexity 1 23 0 199 319 94 43 chr11 8779015 8779212 -140004260 - MIR SINE MIR -29 233 30 295 185 0 0 chr11 8779447 8779501 -140003971 - L2 LINE L2 -2 3270 3217 1060 261 62 73 chr11 8781490 8782038 -140001434 + MLT1H LTR MaLR 8 549 0 506 252 20 54 chr11 8782138 8782285 -140001187 - MER91A DNA MER1_type -41 155 14 468 313 33 0 chr11 8783989 8784139 -139999333 - MIR SINE MIR -87 175 21 219 167 0 0 chr11 8785505 8785547 -139997925 + (TG)n Simple_repeat Simple_repeat 2 43 0 264 241 23 69 chr11 8785597 8785621 -139997851 - MIR3 SINE MIR -15 193 169 2278 124 34 8 chr11 8785621 8785976 -139997496 - THE1B LTR MaLR 0 364 1 264 241 23 69 chr11 8785976 8786038 -139997434 - MIR3 SINE MIR -39 169 111 296 219 47 0 chr11 8786092 8786156 -139997316 - MIR3 SINE MIR -30 178 112 506 143 0 12 chr11 8986338 8986422 -139797050 - AluJ/FLAM SINE Alu -228 84 2 2185 93 0 4 chr11 8986486 8986766 -139796706 + AluSx SINE Alu 20 298 -14 21 36 0 0 chr11 8988500 8988528 -139794944 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 8988599 8988758 -139794714 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 8988758 8988836 -139794636 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 8988965 8988998 -139794474 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 8989531 8989832 -139793640 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 8990851 8991086 -139792386 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 8991601 8991694 -139791778 + MER5B DNA MER1_type 24 116 -62 1784 136 63 14 chr11 8991711 8991997 -139791475 - AluSx SINE Alu -12 300 1 1739 165 7 34 chr11 8992346 8992643 -139790829 + AluJo SINE Alu 1 289 -23 2264 107 0 3 chr11 8992646 8992944 -139790528 + AluSx SINE Alu 1 297 -15 261 0 0 0 chr11 8992945 8992974 -139790498 + (TA)n Simple_repeat Simple_repeat 1 29 0 2286 95 0 0 chr11 8993273 8993584 -139789888 + AluSx SINE Alu 1 311 0 1269 113 0 11 chr11 8993588 8993774 -139789698 + AluSg/x SINE Alu 129 312 0 2258 74 14 7 chr11 8994656 8994941 -139788531 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 8994944 8994973 -139788499 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2077 152 0 0 chr11 8995063 8995366 -139788106 - AluSx SINE Alu -9 303 1 1999 132 16 13 chr11 8995743 8996054 -139787418 + AluSq SINE Alu 1 312 -1 318 50 0 0 chr11 8996189 8996229 -139787243 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 328 51 69 chr11 8997279 8997611 -139785861 + L2 LINE L2 2925 3250 -22 1768 150 27 14 chr11 8997788 8998081 -139785391 + AluJb SINE Alu 11 307 -5 1985 149 0 0 chr11 8998266 8998570 -139784902 + AluJo SINE Alu 1 304 0 2269 107 0 0 chr11 8998636 8998925 -139784547 - AluSg SINE Alu -21 289 1 3060 141 29 72 chr11 8999333 8999382 -139784090 + MER41D LTR ERV1 1 51 -506 2127 97 19 55 chr11 8999382 8999692 -139783780 - AluSx SINE Alu -13 299 1 3060 141 29 72 chr11 8999692 8999870 -139783602 + MER41D LTR ERV1 51 235 -322 1993 138 13 7 chr11 8999870 9000175 -139783297 + AluJo SINE Alu 1 307 -5 3060 141 29 72 chr11 9000175 9000402 -139783070 + MER41D LTR ERV1 235 428 -129 2222 112 3 3 chr11 9000402 9000698 -139782774 - AluSx SINE Alu -16 296 1 3060 141 29 72 chr11 9000698 9000823 -139782649 + MER41D LTR ERV1 428 557 0 412 224 213 11 chr11 9000874 9001048 -139782424 - MLT1K LTR MaLR 0 588 380 189 0 0 0 chr11 9001295 9001316 -139782156 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9001330 9001544 -139781928 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9001544 9001836 -139781636 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9002075 9002334 -139781138 - AluSq SINE Alu -53 260 1 237 277 128 69 chr11 9002599 9002787 -139780685 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9002806 9003112 -139780360 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9003134 9003460 -139780012 + L2 LINE L2 1728 2088 -1226 3356 142 2 31 chr11 9003481 9004022 -139779450 + MER1A DNA MER1_type 1 525 -2 218 341 57 0 chr11 9004089 9004177 -139779295 + MIR SINE MIR 48 140 -122 2234 116 0 6 chr11 9004238 9004549 -139778923 + AluSg SINE Alu 1 309 -1 2436 84 3 0 chr11 9005528 9005838 -139777634 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9005839 9006140 -139777332 - AluSg1 SINE Alu -8 301 1 384 77 0 0 chr11 9007267 9007319 -139776153 + (TG)n Simple_repeat Simple_repeat 1 52 0 2180 98 10 3 chr11 9007440 9007736 -139775736 - AluSx SINE Alu -13 299 2 2271 111 3 0 chr11 9007739 9008036 -139775436 - AluSg SINE Alu -12 298 1 2275 108 3 3 chr11 9008206 9008511 -139774961 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9008652 9008797 -139774675 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9008830 9008927 -139774545 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9009023 9009194 -139774278 + AluSg/x SINE Alu 113 286 -24 1588 190 6 25 chr11 9009828 9010154 -139773318 - 7SLRNA srpRNA srpRNA 0 320 1 1008 238 114 65 chr11 9010207 9010304 -139773168 - L1MC4a LINE L1 -1944 5864 5773 2149 105 23 10 chr11 9010304 9010609 -139772863 + AluSg SINE Alu 1 309 -1 1008 238 114 65 chr11 9010609 9010800 -139772672 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9010800 9010834 -139772638 + (CA)n Simple_repeat Simple_repeat 2 35 0 1008 238 114 65 chr11 9010834 9010990 -139772482 - L1MC4a LINE L1 -2215 5593 5397 1989 86 4 0 chr11 9011898 9012190 -139771282 + AluSg SINE Alu 37 329 0 562 192 0 0 chr11 9012940 9013039 -139770433 - U13 snRNA snRNA -2 102 4 191 261 11 57 chr11 9014766 9014854 -139768618 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9016496 9016553 -139766919 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 9016653 9016674 -139766798 + GC_rich Low_complexity Low_complexity 1 21 0 35 78 0 0 chr11 9016872 9016949 -139766523 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9017004 9017035 -139766437 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9017080 9017111 -139766361 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9017603 9017636 -139765836 + GC_rich Low_complexity Low_complexity 1 33 0 2266 98 3 22 chr11 9018359 9018675 -139764797 - AluSx SINE Alu -2 310 1 1933 92 32 51 chr11 9018730 9019044 -139764428 - AluSx SINE Alu -4 308 1 1737 139 7 36 chr11 9019655 9019956 -139763516 - AluJb SINE Alu -10 302 11 1875 167 3 10 chr11 9020497 9020796 -139762676 + AluJb SINE Alu 4 300 -12 2035 153 3 0 chr11 9021197 9021498 -139761974 - AluJb SINE Alu -10 302 1 304 293 151 46 chr11 9021525 9021764 -139761708 + L2 LINE L2 3009 3272 0 2579 53 0 0 chr11 9022914 9023217 -139760255 - AluY SINE Alu -8 303 1 1885 147 17 3 chr11 9023293 9023586 -139759886 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr11 9023822 9023843 -139759629 + AT_rich Low_complexity Low_complexity 1 21 0 309 0 0 0 chr11 9024473 9024509 -139758963 - MER11C LTR ERVK -1035 36 1 378 254 152 0 chr11 9025250 9025388 -139758084 - MIR SINE MIR -10 252 94 35 0 0 0 chr11 9025438 9025473 -139757999 + AT_rich Low_complexity Low_complexity 1 35 0 1748 146 46 30 chr11 9025501 9025803 -139757669 - AluJo SINE Alu -5 307 1 414 271 33 33 chr11 9026120 9026271 -139757201 - L2 LINE L2 -193 3120 2970 2077 148 0 0 chr11 9026425 9026723 -139756749 + AluSx SINE Alu 1 298 -14 2069 120 7 13 chr11 9026842 9027141 -139756331 + AluSx SINE Alu 1 297 -15 9501 125 38 66 chr11 9027159 9028274 -139755198 + L1M1 LINE L1 22 1167 -6398 1924 168 13 0 chr11 9028274 9028577 -139754895 + AluSx SINE Alu 1 307 -5 9501 125 38 66 chr11 9028577 9029877 -139753595 + L1M1 LINE L1 1167 3044 -4521 1305 173 35 35 chr11 9029877 9030137 -139753335 + AluJo SINE Alu 45 304 -8 9621 146 23 39 chr11 9030137 9030283 -139753189 + L1M1 LINE L1 3038 3185 -4380 2190 113 0 0 chr11 9030283 9030607 -139752865 + AluSg SINE Alu 1 324 0 9621 146 23 39 chr11 9030607 9031213 -139752259 + L1M1 LINE L1 3185 3800 -3765 2430 93 0 0 chr11 9031213 9031513 -139751959 + AluSx SINE Alu 1 300 -12 9621 146 23 39 chr11 9031513 9032176 -139751296 + L1M1 LINE L1 3800 4473 -3092 1782 164 4 11 chr11 9032176 9032486 -139750986 + AluSx SINE Alu 3 310 0 9621 146 23 39 chr11 9032486 9032659 -139750813 + L1M1 LINE L1 4473 4647 -2918 2321 70 40 7 chr11 9032659 9032960 -139750512 + AluY SINE Alu 1 311 0 9621 146 23 39 chr11 9032960 9033518 -139749954 + L1M1 LINE L1 4647 5213 -2352 9412 96 8 21 chr11 9033518 9034821 -139748651 - HSMAR1 DNA Mariner 0 1287 3 9621 146 23 39 chr11 9034821 9035077 -139748395 + L1M1 LINE L1 5213 5472 -2093 2287 108 0 7 chr11 9035077 9035382 -139748090 + AluSq SINE Alu 1 303 -10 9621 146 23 39 chr11 9035382 9035716 -139747756 + L1M1 LINE L1 5472 5742 -1823 2260 119 0 0 chr11 9035800 9036094 -139747378 + AluSg SINE Alu 1 294 -16 1183 110 0 0 chr11 9036094 9036258 -139747214 + L1MA2 LINE L1 6141 6304 0 21 36 0 0 chr11 9036258 9036286 -139747186 + AT_rich Low_complexity Low_complexity 1 28 0 2296 109 3 0 chr11 9036868 9037172 -139746300 - AluSx SINE Alu -7 305 1 2432 46 0 3 chr11 9037417 9037733 -139745739 - AluY SINE Alu 0 315 1 359 210 76 59 chr11 9037818 9037937 -139745535 - L1M4 LINE L1 -1964 4182 4062 2205 87 17 3 chr11 9037958 9038247 -139745225 + AluSx SINE Alu 1 293 -19 4207 139 70 3 chr11 9038248 9038922 -139744550 - Tigger1 DNA MER2_type -1655 763 45 2046 155 0 3 chr11 9038922 9039231 -139744241 + AluSx SINE Alu 1 308 -4 327 154 0 0 chr11 9039270 9039322 -139744150 + Tigger7 DNA MER2_type 5 56 -283 296 164 36 0 chr11 9039343 9039398 -139744074 - Tigger1 DNA MER2_type -2361 57 1 32 44 0 29 chr11 9039419 9039470 -139744002 + AT_rich Low_complexity Low_complexity 1 51 -15 2237 104 3 0 chr11 9039470 9039757 -139743715 - AluSx SINE Alu -24 288 1 32 44 0 29 chr11 9039757 9039773 -139743699 + AT_rich Low_complexity Low_complexity 51 66 0 266 254 62 110 chr11 9040050 9040324 -139743148 - L1P LINE L1 -2705 3441 3155 2519 64 3 0 chr11 9040324 9040620 -139742852 - AluSg SINE Alu -13 297 1 1713 190 7 0 chr11 9040627 9040917 -139742555 - AluJo SINE Alu -20 292 1 266 254 62 110 chr11 9040917 9041134 -139742338 - L1P LINE L1 -2997 3149 2966 907 217 211 29 chr11 9041174 9041290 -139742182 - L1ME3A LINE L1 0 6170 6076 634 201 107 53 chr11 9041290 9041370 -139742102 - MER45A DNA AcHobo -1403 178 104 2441 71 0 0 chr11 9041370 9041674 -139741798 + AluSx SINE Alu 1 304 0 634 201 107 53 chr11 9041674 9041761 -139741711 - MER45A DNA AcHobo -1477 104 1 907 217 211 29 chr11 9041761 9041957 -139741515 - L1ME3A LINE L1 -94 6076 5801 1934 165 0 0 chr11 9041969 9042266 -139741206 + AluSx SINE Alu 1 297 -15 44036 33 21 1 chr11 9042329 9048359 -139735113 + L1PA3 LINE L1 3 6155 0 292 47 0 0 chr11 9048923 9048966 -139734506 + AluY SINE Alu 259 301 0 22 56 0 0 chr11 9049146 9049182 -139734290 + AT_rich Low_complexity Low_complexity 1 36 0 1883 154 11 0 chr11 9049197 9049482 -139733990 + AluJb SINE Alu 1 288 -24 1378 136 0 0 chr11 9049482 9049680 -139733792 + AluSg/x SINE Alu 107 304 -6 878 178 6 30 chr11 9049683 9049852 -139733620 + AluJo/FRAM SINE Alu 137 301 -1 408 141 0 16 chr11 9049856 9049920 -139733552 - MLT1D LTR MaLR -442 63 1 260 179 179 15 chr11 9050001 9050068 -139733404 - L1ME3A LINE L1 -2029 5779 5702 1572 161 3 49 chr11 9050143 9050447 -139733025 + AluJb SINE Alu 1 290 -22 1566 150 135 0 chr11 9050460 9050726 -139732746 + AluSx SINE Alu 1 302 0 781 226 52 0 chr11 9050743 9050898 -139732574 + FRAM SINE Alu 4 166 0 272 309 49 0 chr11 9050901 9050982 -139732490 - L1ME3A LINE L1 -2289 5519 5435 2606 67 0 3 chr11 9050988 9051300 -139732172 - AluY SINE Alu 0 311 1 353 196 20 20 chr11 9051334 9051436 -139732036 - L1ME3A LINE L1 -2360 5448 5347 1986 116 0 0 chr11 9051490 9051748 -139731724 + AluSx SINE Alu 1 258 -54 195 42 0 0 chr11 9051807 9051831 -139731641 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2452 78 3 3 chr11 9052396 9052704 -139730768 + AluSq SINE Alu 1 308 -5 2235 104 0 3 chr11 9052704 9053001 -139730471 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr11 9053810 9053830 -139729642 + (T)n Simple_repeat Simple_repeat 1 20 0 1140 188 76 144 chr11 9054083 9054240 -139729232 - MER4C LTR ERV1 0 465 299 2692 88 119 12 chr11 9054240 9054660 -139728812 - MER4C LTR ERV1 0 465 1 1140 188 76 144 chr11 9054660 9055001 -139728471 - MER4C LTR ERV1 -166 299 1 496 194 39 10 chr11 9055383 9055486 -139727986 - MER45B DNA AcHobo 0 1040 935 1163 108 84 25 chr11 9055486 9055559 -139727913 + L1MB3 LINE L1 5887 5954 -229 2014 100 0 81 chr11 9055559 9055900 -139727572 + AluSx SINE Alu 1 316 0 1163 108 84 25 chr11 9055900 9056028 -139727444 + L1MB3 LINE L1 5954 6101 -82 1107 162 0 0 chr11 9056028 9056201 -139727271 + MER2 DNA MER2_type 1 173 -172 915 132 0 0 chr11 9056296 9056425 -139727047 - FLAM_C SINE Alu -9 134 6 450 138 0 0 chr11 9056429 9056494 -139726978 + MER2 DNA MER2_type 271 335 -10 292 124 106 4 chr11 9056515 9056587 -139726885 + L1MB3 LINE L1 6100 6180 0 999 176 50 31 chr11 9056597 9056681 -139726791 - MER45B DNA AcHobo -643 938 857 2289 100 3 3 chr11 9056681 9056981 -139726491 + AluSx SINE Alu 1 300 -12 999 176 50 31 chr11 9056981 9057118 -139726354 - MER45B DNA AcHobo -724 857 713 1098 265 87 47 chr11 9057308 9057748 -139725724 - MER45C DNA AcHobo -347 606 101 1860 148 45 0 chr11 9057748 9058039 -139725433 + AluJb SINE Alu 1 304 -8 1098 265 87 47 chr11 9058039 9058145 -139725327 - MER45C DNA AcHobo -852 101 1 393 270 35 47 chr11 9059843 9060043 -139723429 + MIR SINE MIR 17 213 -49 23 54 0 0 chr11 9060148 9060185 -139723287 + AT_rich Low_complexity Low_complexity 1 37 0 1048 141 0 40 chr11 9061422 9061561 -139721911 + AluJo SINE Alu 1 133 -179 2262 70 3 33 chr11 9061561 9061863 -139721609 + AluY SINE Alu 1 293 -18 1048 141 0 40 chr11 9061863 9061900 -139721572 + AluJo SINE Alu 133 170 -142 823 138 0 0 chr11 9061954 9062070 -139721402 + FLAM_C SINE Alu 3 118 -15 26 50 0 0 chr11 9062070 9062110 -139721362 + AT_rich Low_complexity Low_complexity 1 40 0 1567 114 5 0 chr11 9062330 9062541 -139720931 - AluJb SINE Alu -20 292 81 1690 166 7 14 chr11 9062544 9062834 -139720638 - AluJb SINE Alu -24 288 1 634 246 66 44 chr11 9064269 9064497 -139718975 + L1ME LINE L1 1 233 -5837 255 327 18 0 chr11 9064517 9064627 -139718845 + L1ME LINE L1 290 401 -5669 2336 93 7 0 chr11 9064628 9064929 -139718543 - AluSx SINE Alu -9 303 1 24 0 0 0 chr11 9064931 9064955 -139718517 + AT_rich Low_complexity Low_complexity 1 24 0 2565 31 0 3 chr11 9064955 9065243 -139718229 - AluY SINE Alu -24 287 1 431 272 0 0 chr11 9065505 9065619 -139717853 + L1ME LINE L1 526 639 -5431 1488 88 0 34 chr11 9065626 9065830 -139717642 + AluSq SINE Alu 1 197 -116 2381 89 3 0 chr11 9065901 9066204 -139717268 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr11 9066283 9066304 -139717168 + AT_rich Low_complexity Low_complexity 1 21 0 469 217 0 0 chr11 9066306 9066398 -139717074 + FLAM_A SINE Alu 2 93 -49 413 125 0 0 chr11 9066415 9066471 -139717001 - AluS SINE Alu -260 58 3 360 205 197 0 chr11 9066474 9066601 -139716871 - L1M4 LINE L1 -3016 3130 2979 2143 123 3 3 chr11 9066610 9066912 -139716560 - AluSx SINE Alu -10 302 1 1030 244 32 86 chr11 9066914 9067096 -139716376 + L1M4 LINE L1 3314 3504 -2642 180 0 0 0 chr11 9067096 9067116 -139716356 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1030 244 32 86 chr11 9067116 9067399 -139716073 + L1M4 LINE L1 3504 3750 -2396 1659 158 25 19 chr11 9067399 9067715 -139715757 + L1MC1 LINE L1 6016 6333 0 1030 244 32 86 chr11 9067715 9067773 -139715699 + L1M4 LINE L1 3750 3810 -2336 446 168 69 20 chr11 9067784 9067885 -139715587 + L1ME2 LINE L1 5419 5524 -638 469 110 27 0 chr11 9067885 9067958 -139715514 - AluSg SINE Alu -6 306 232 1061 198 37 8 chr11 9068066 9068309 -139715163 - AluSg SINE Alu -60 250 1 1320 176 18 116 chr11 9068311 9068513 -139714959 - AluJo SINE Alu -5 297 138 2182 89 3 0 chr11 9068513 9068795 -139714677 + AluSx SINE Alu 30 312 0 1320 176 18 116 chr11 9068795 9068921 -139714551 - AluJo SINE Alu -164 138 1 2004 205 45 2 chr11 9068959 9069379 -139714093 + L1ME2 LINE L1 5513 5950 -214 596 87 0 12 chr11 9069379 9069609 -139713863 + AluSx SINE Alu 1 296 -16 908 191 70 23 chr11 9069610 9069825 -139713647 + L1ME2 LINE L1 5940 6164 0 2372 76 0 13 chr11 9070089 9070393 -139713079 - AluSq SINE Alu -13 300 1 430 86 0 0 chr11 9070393 9070451 -139713021 - L1M LINE L1 -755 5423 5366 * 435 173 21 21 chr11 9070427 9070522 -139712950 - L1ME LINE L1 -589 5575 5481 763 217 50 75 chr11 9070556 9071075 -139712397 - L1ME LINE L1 -663 5501 5000 1367 213 167 35 chr11 9071148 9071603 -139711869 + L1MC4a LINE L1 5384 5898 -1910 1398 108 159 47 chr11 9071634 9071866 -139711606 + AluJb SINE Alu 1 258 -54 434 281 65 7 chr11 9072182 9072335 -139711137 - MIR SINE MIR -3 259 98 1710 184 0 16 chr11 9072809 9073125 -139710347 - AluJo SINE Alu 0 312 2 2401 89 0 16 chr11 9073140 9073455 -139710017 - AluY SINE Alu 0 311 2 2366 80 14 0 chr11 9073689 9073977 -139709495 - AluSp SINE Alu -21 292 1 328 204 0 25 chr11 9074636 9074859 -139708613 + AluJo SINE Alu 11 285 -17 1706 174 28 0 chr11 9074920 9075208 -139708264 - AluSx SINE Alu -14 298 3 2561 60 0 0 chr11 9076773 9077073 -139706399 + AluY SINE Alu 1 300 -11 2232 92 0 49 chr11 9077082 9077222 -139706250 + AluSp SINE Alu 1 146 -167 2378 82 3 22 chr11 9077222 9077538 -139705934 + AluY SINE Alu 1 310 -1 2232 92 0 49 chr11 9077538 9077724 -139705748 + AluSp SINE Alu 146 311 -2 25 31 0 0 chr11 9078339 9078371 -139705101 + AT_rich Low_complexity Low_complexity 1 32 0 2628 59 0 0 chr11 9078400 9078706 -139704766 + AluY SINE Alu 1 306 -5 748 85 85 0 chr11 9078865 9078983 -139704489 - L1MA7 LINE L1 -161 6130 6003 651 204 151 42 chr11 9080846 9081111 -139702361 - L1MC5 LINE L1 -50 7911 7618 974 211 43 100 chr11 9081130 9081590 -139701882 + L1MC4a LINE L1 6194 6627 -1181 195 129 0 0 chr11 9081994 9082025 -139701447 + (A)n Simple_repeat Simple_repeat 1 31 0 492 237 50 14 chr11 9082205 9082344 -139701128 + MER5B DNA MER1_type 35 178 0 2095 117 0 17 chr11 9082474 9082773 -139700699 - AluSx SINE Alu -13 299 6 2064 130 13 7 chr11 9082920 9083221 -139700251 - AluSx SINE Alu -9 303 1 1825 109 4 4 chr11 9083294 9083541 -139699931 + AluSx SINE Alu 45 291 -21 2341 95 0 3 chr11 9083548 9083843 -139699629 + AluSc SINE Alu 1 294 -15 2458 90 0 3 chr11 9083845 9084155 -139699317 + AluSc SINE Alu 1 309 0 21 57 0 0 chr11 9084204 9084239 -139699233 + AT_rich Low_complexity Low_complexity 1 35 0 4147 139 40 83 chr11 9084314 9084560 -139698912 + L1MB7 LINE L1 5148 5403 -781 2130 133 3 3 chr11 9084560 9084868 -139698604 + AluSg SINE Alu 1 308 -2 2176 104 0 36 chr11 9084868 9085177 -139698295 + AluSx SINE Alu 1 298 -14 4147 139 40 83 chr11 9085177 9085689 -139697783 + L1MB7 LINE L1 5402 5934 -250 2117 71 0 4 chr11 9085689 9085942 -139697530 + AluY SINE Alu 1 252 -59 4147 139 40 83 chr11 9085942 9086196 -139697276 + L1MB7 LINE L1 5934 6115 -69 2362 82 7 0 chr11 9086196 9086489 -139696983 - AluY SINE Alu -16 295 1 4147 139 40 83 chr11 9086489 9086547 -139696925 + L1MB7 LINE L1 6115 6174 -10 231 36 0 0 chr11 9086551 9086579 -139696893 + (A)n Simple_repeat Simple_repeat 1 28 0 2481 84 3 0 chr11 9086582 9086893 -139696579 + AluSp SINE Alu 1 312 -1 233 156 89 0 chr11 9087339 9087384 -139696088 + L2 LINE L2 3224 3272 0 1651 98 0 5 chr11 9088163 9088378 -139695094 + AluSg/x SINE Alu 83 296 -16 1794 171 0 13 chr11 9088568 9088867 -139694605 + AluJb SINE Alu 1 295 -17 1031 146 6 0 chr11 9089092 9089256 -139694216 - FAM SINE Alu -10 165 1 277 102 20 20 chr11 9089450 9089499 -139693973 + MIR3 SINE MIR 150 198 -10 245 264 19 0 chr11 9090380 9090433 -139693039 + MIR SINE MIR 48 101 -107 2662 50 0 0 chr11 9090685 9090987 -139692485 + AluY SINE Alu 1 302 -9 2139 120 3 3 chr11 9091285 9091584 -139691888 + AluSx SINE Alu 1 299 -13 2253 116 6 3 chr11 9091918 9092229 -139691243 + AluSx SINE Alu 1 312 0 431 274 65 6 chr11 9092840 9093008 -139690464 + MIR SINE MIR 16 193 -69 637 245 45 35 chr11 9093015 9093215 -139690257 - MIR SINE MIR -1 261 60 2248 79 14 0 chr11 9093355 9093654 -139689818 - AluSq SINE Alu 0 303 1 328 290 60 0 chr11 9093782 9093882 -139689590 - L2 LINE L2 -14 3258 3153 1508 164 11 35 chr11 9094205 9094492 -139688980 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 9094492 9094513 -139688959 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2364 84 0 7 chr11 9095446 9095744 -139687728 + AluSc SINE Alu 1 296 -13 395 195 34 34 chr11 9096145 9096263 -139687209 + L1MB8 LINE L1 6031 6148 -30 1954 116 29 14 chr11 9096270 9096403 -139687069 + AluSq SINE Alu 2 132 -176 2093 133 0 7 chr11 9096403 9096711 -139686761 + AluSx SINE Alu 1 306 -6 1954 116 29 14 chr11 9096711 9096880 -139686592 + AluSq SINE Alu 132 308 0 1538 185 11 11 chr11 9096887 9097168 -139686304 + AluJb SINE Alu 1 281 -31 2296 75 3 10 chr11 9097168 9097462 -139686010 - AluY SINE Alu -18 293 1 673 207 7 22 chr11 9097578 9097713 -139685759 - FLAM_A SINE Alu 0 133 1 1789 178 3 3 chr11 9097785 9098072 -139685400 + AluJb SINE Alu 1 287 -25 1821 136 39 32 chr11 9098233 9098541 -139684931 + AluJo SINE Alu 3 312 0 343 207 82 52 chr11 9098554 9098612 -139684860 - L1ME4a LINE L1 -92 6029 5974 1717 160 23 39 chr11 9098612 9098919 -139684553 - AluJo SINE Alu -10 302 1 343 207 82 52 chr11 9098919 9098995 -139684477 - L1ME4a LINE L1 -147 5974 5891 24 0 0 0 chr11 9100033 9100057 -139683415 + AT_rich Low_complexity Low_complexity 1 24 0 895 211 0 0 chr11 9100560 9100716 -139682756 - AluSg/x SINE Alu -22 290 135 2278 86 10 3 chr11 9101161 9101462 -139682010 + AluY SINE Alu 1 303 -8 190 296 0 0 chr11 9101466 9101510 -139681962 + MIR SINE MIR 57 100 -108 2455 87 0 0 chr11 9101551 9101850 -139681622 + AluSq SINE Alu 1 299 -14 2341 105 0 0 chr11 9101851 9102155 -139681317 + AluY SINE Alu 1 304 -7 35 0 0 0 chr11 9102349 9102384 -139681088 + AT_rich Low_complexity Low_complexity 1 35 0 469 264 110 40 chr11 9102484 9102711 -139680761 - MIR SINE MIR -5 257 15 2051 126 38 0 chr11 9103077 9103370 -139680102 + AluSx SINE Alu 1 304 -8 2642 49 0 0 chr11 9103621 9103925 -139679547 + AluY SINE Alu 1 304 -7 959 173 0 63 chr11 9103928 9104119 -139679353 + AluSg/x SINE Alu 134 312 0 1806 142 0 65 chr11 9104210 9104535 -139678937 + AluSx SINE Alu 1 304 -8 2251 117 0 0 chr11 9104677 9104977 -139678495 + AluSc SINE Alu 1 300 -9 483 215 188 14 chr11 9104982 9105126 -139678346 + AluSg/x SINE Alu 135 303 -7 2150 124 7 3 chr11 9105130 9105436 -139678036 + AluSg SINE Alu 1 307 -3 1984 153 0 0 chr11 9105436 9105717 -139677755 + AluSx SINE Alu 6 286 -26 27 0 0 0 chr11 9105720 9105747 -139677725 + AT_rich Low_complexity Low_complexity 1 27 0 1386 100 116 4 chr11 9105750 9106000 -139677472 - MER33 DNA MER1_type -46 278 1 2420 68 0 0 chr11 9106153 9106446 -139677026 + AluY SINE Alu 1 293 -18 2479 71 0 0 chr11 9106453 9106749 -139676723 + AluY SINE Alu 1 296 -15 2295 112 7 0 chr11 9106821 9107117 -139676355 - AluSx SINE Alu -14 298 1 1646 179 15 4 chr11 9107341 9107614 -139675858 - AluJo SINE Alu -33 279 4 2424 93 7 3 chr11 9107810 9108120 -139675352 - AluSq SINE Alu -2 311 1 815 122 0 95 chr11 9109419 9109566 -139673906 + FLAM_C SINE Alu 1 133 0 450 119 0 30 chr11 9109950 9110017 -139673455 - AluJ/FLAM SINE Alu -242 70 6 451 304 47 0 chr11 9110418 9110566 -139672906 - MIR SINE MIR -14 248 94 2159 102 0 13 chr11 9110598 9110911 -139672561 + AluSg SINE Alu 1 309 -1 2219 97 3 7 chr11 9111177 9111467 -139672005 + AluSc SINE Alu 9 297 -12 686 35 0 76 chr11 9111467 9111612 -139671860 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 34 42 0 0 chr11 9111639 9111687 -139671785 + AT_rich Low_complexity Low_complexity 1 48 0 2173 69 0 11 chr11 9111701 9111977 -139671495 + AluY SINE Alu 38 310 -1 2221 93 14 0 chr11 9112052 9112341 -139671131 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 9112341 9112368 -139671104 + AT_rich Low_complexity Low_complexity 1 27 0 804 229 65 22 chr11 9112380 9112611 -139670861 - MIR SINE MIR 0 262 22 441 0 0 0 chr11 9112768 9112817 -139670655 + (CA)n Simple_repeat Simple_repeat 2 50 0 1969 122 14 37 chr11 9112825 9113121 -139670351 - AluSx SINE Alu -21 291 3 1347 211 26 68 chr11 9113151 9113459 -139670013 + AluJo SINE Alu 1 295 -7 1667 149 54 17 chr11 9113559 9113855 -139669617 + AluJo SINE Alu 1 307 -5 281 231 0 0 chr11 9113917 9113982 -139669490 - L3 LINE CR1 -175 1402 1338 2384 83 3 3 chr11 9115324 9115624 -139667848 - AluSp SINE Alu -13 300 1 25 31 0 0 chr11 9115794 9115826 -139667646 + AT_rich Low_complexity Low_complexity 1 32 0 2264 101 0 3 chr11 9116181 9116478 -139666994 + AluSg SINE Alu 1 296 -14 2024 158 3 0 chr11 9116504 9116815 -139666657 + AluJb SINE Alu 1 312 0 2238 100 3 17 chr11 9116880 9117180 -139666292 + AluSq SINE Alu 1 296 -17 1365 270 99 17 chr11 9117753 9118514 -139664958 + L2 LINE L2 2488 3313 0 1111 138 0 13 chr11 9118877 9119036 -139664436 + AluSx SINE Alu 1 157 -155 2202 105 0 32 chr11 9119193 9119507 -139663965 + AluSq SINE Alu 1 304 -9 2186 117 7 0 chr11 9119579 9119869 -139663603 - AluSx SINE Alu -18 294 3 724 171 85 0 chr11 9119892 9120021 -139663451 - FRAM SINE Alu -36 140 1 2090 122 10 7 chr11 9120856 9121152 -139662320 - AluSg SINE Alu -8 302 6 1959 139 10 7 chr11 9121191 9121485 -139661987 + AluSq SINE Alu 5 299 -14 2304 80 6 6 chr11 9121530 9121841 -139661631 + AluY SINE Alu 1 311 0 1484 171 6 70 chr11 9121982 9122128 -139661344 + AluJb SINE Alu 1 155 -168 2455 91 0 0 chr11 9122128 9122437 -139661035 + AluSq SINE Alu 2 310 -3 2130 111 35 0 chr11 9122440 9122728 -139660744 + AluSq SINE Alu 1 298 -15 1484 171 6 70 chr11 9122728 9122920 -139660552 + AluJb SINE Alu 157 323 0 22 35 0 0 chr11 9122945 9122974 -139660498 + AT_rich Low_complexity Low_complexity 1 29 0 1574 77 115 51 chr11 9122977 9123235 -139660237 + AluY SINE Alu 37 309 0 2396 92 3 0 chr11 9123241 9123546 -139659926 + AluSg SINE Alu 1 306 -4 2193 82 0 11 chr11 9123792 9124071 -139659401 - AluSg SINE Alu -20 290 15 225 0 0 0 chr11 9124101 9124126 -139659346 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2207 104 0 0 chr11 9124126 9124406 -139659066 - AluSx SINE Alu -32 280 1 1075 130 12 12 chr11 9124421 9124583 -139658889 + AluJb SINE Alu 129 290 -22 378 74 0 0 chr11 9124601 9124655 -139658817 + (CA)n Simple_repeat Simple_repeat 2 55 0 271 183 103 63 chr11 9124656 9124782 -139658690 + L1MC4a LINE L1 5781 5911 -1897 21 0 0 0 chr11 9124895 9124916 -139658556 + AT_rich Low_complexity Low_complexity 1 21 0 3369 196 86 10 chr11 9125026 9125837 -139657635 + L1MB5 LINE L1 5227 6106 -68 2407 76 0 3 chr11 9125844 9126135 -139657337 - AluSq SINE Alu -21 292 3 892 179 48 43 chr11 9126158 9126365 -139657107 - AluJo SINE Alu -17 295 88 358 104 30 30 chr11 9126367 9126434 -139657038 + L1MB8 LINE L1 6112 6178 0 2340 92 0 3 chr11 9129186 9129492 -139653980 - AluSg SINE Alu -5 305 1 1247 60 0 0 chr11 9129603 9129754 -139653718 + AluY SINE Alu 159 309 -2 306 71 24 48 chr11 9130541 9130625 -139652847 + (TA)n Simple_repeat Simple_repeat 1 82 0 2109 86 46 0 chr11 9130669 9130949 -139652523 + AluSg SINE Alu 1 293 -17 2085 143 3 13 chr11 9130949 9131085 -139652387 + AluSq SINE Alu 2 138 -165 2095 99 0 65 chr11 9131085 9131219 -139652253 + AluY SINE Alu 1 142 -169 2339 107 0 0 chr11 9131219 9131528 -139651944 + AluSx SINE Alu 1 309 -3 2095 99 0 65 chr11 9131528 9131715 -139651757 + AluY SINE Alu 142 301 -10 2085 143 3 13 chr11 9131715 9131879 -139651593 + AluSq SINE Alu 138 298 -5 2255 64 10 14 chr11 9131886 9132228 -139651244 + AluY SINE Alu 2 296 -15 3771 184 75 33 chr11 9132234 9132855 -139650617 - L1MB7 LINE L1 -5 6179 5586 2341 50 11 0 chr11 9132855 9133132 -139650340 - AluY SINE Alu -12 299 20 3771 184 75 33 chr11 9133132 9133172 -139650300 - L1MB7 LINE L1 -598 5586 5549 1698 153 32 7 chr11 9133172 9133453 -139650019 - AluSx SINE Alu -24 288 1 3771 184 75 33 chr11 9133453 9133742 -139649730 - L1MB7 LINE L1 -635 5549 5274 2126 132 0 16 chr11 9133742 9133874 -139649598 + AluSx SINE Alu 5 138 -174 2156 121 3 0 chr11 9133874 9134172 -139649300 + AluSx SINE Alu 1 299 -13 2126 132 0 16 chr11 9134172 9134341 -139649131 + AluSx SINE Alu 138 301 -11 2109 99 0 33 chr11 9134341 9134476 -139648996 + AluSc SINE Alu 1 139 -170 3771 184 75 33 chr11 9134342 9134476 -139648996 - L1MB7 LINE L1 -910 5274 5147 2427 89 3 0 chr11 9134476 9134780 -139648692 + AluSp SINE Alu 1 305 -8 3771 184 75 33 chr11 9134780 9135068 -139648404 - L1MB7 LINE L1 -1037 5147 5039 2109 99 0 33 chr11 9134780 9134946 -139648526 + AluSc SINE Alu 139 292 -17 1689 165 21 10 chr11 9135068 9135359 -139648113 - AluJb SINE Alu -18 294 1 3771 184 75 33 chr11 9135359 9135622 -139647850 - L1MB7 LINE L1 -1145 5039 4789 2034 120 0 24 chr11 9135623 9135845 -139647627 - AluSx SINE Alu 0 311 97 4750 170 71 48 chr11 9135845 9136892 -139646580 + MER11C LTR ERVK 1 1071 0 2034 120 0 24 chr11 9136892 9136987 -139646485 - AluSx SINE Alu -214 97 1 2028 214 133 24 chr11 9137038 9137315 -139646157 - L1MB7 LINE L1 -1446 4700 4455 2023 100 23 27 chr11 9137315 9137616 -139645856 - AluSc SINE Alu -9 300 1 2028 214 133 24 chr11 9137616 9137675 -139645797 - L1MB7 LINE L1 -1691 4455 4404 2096 105 17 7 chr11 9137675 9137970 -139645502 - AluSq SINE Alu -15 298 1 2028 214 133 24 chr11 9137970 9138023 -139645449 - L1MB7 LINE L1 -1742 4404 4358 1869 113 94 0 chr11 9138023 9138298 -139645174 - AluSx SINE Alu -11 301 1 2028 214 133 24 chr11 9138298 9138574 -139644898 - L1MB7 LINE L1 -1788 4358 3960 2221 117 0 0 chr11 9138623 9138923 -139644549 + AluSp SINE Alu 1 300 -13 2228 112 3 0 chr11 9139000 9139295 -139644177 - AluSx SINE Alu -16 296 1 840 156 8 0 chr11 9139303 9139425 -139644047 - FLAM_C SINE Alu -10 123 1 2165 120 3 0 chr11 9139481 9139781 -139643691 + AluSg SINE Alu 1 301 -9 248 355 40 0 chr11 9139892 9140016 -139643456 + MLT1J LTR MaLR 92 220 -291 21 0 0 0 chr11 9140625 9140646 -139642826 + AT_rich Low_complexity Low_complexity 1 21 0 1823 101 0 16 chr11 9143770 9144027 -139639445 - AluSx SINE Alu -11 301 49 298 191 15 29 chr11 9144027 9144095 -139639377 + AluSg SINE Alu 63 129 -171 304 233 11 40 chr11 9144146 9144322 -139639150 + C-rich Low_complexity Low_complexity 4 174 0 1462 106 5 10 chr11 9144565 9144763 -139638709 + AluSg/x SINE Alu 68 264 -46 37 0 0 0 chr11 9144775 9144812 -139638660 + AT_rich Low_complexity Low_complexity 1 37 0 2243 112 0 10 chr11 9144862 9145174 -139638298 - AluSx SINE Alu -3 309 1 1787 175 11 0 chr11 9145261 9145546 -139637926 - AluJb SINE Alu -24 288 1 2484 60 7 0 chr11 9145557 9145856 -139637616 - AluSp SINE Alu -12 301 1 1089 141 6 0 chr11 9145947 9146110 -139637362 - AluSp SINE Alu -14 299 136 1999 154 3 3 chr11 9146121 9146426 -139637046 - AluSx SINE Alu -7 305 1 2219 107 0 0 chr11 9146454 9146772 -139636700 + AluY SINE Alu 1 311 0 22 70 0 0 chr11 9146879 9146922 -139636550 + AT_rich Low_complexity Low_complexity 1 43 0 2302 87 10 13 chr11 9149295 9149604 -139633868 + AluSc SINE Alu 2 309 0 202 211 88 0 chr11 9149669 9149726 -139633746 - MIR SINE MIR -27 235 174 2253 113 0 10 chr11 9149751 9150062 -139633410 + AluSq SINE Alu 1 308 -5 649 188 0 0 chr11 9150064 9150165 -139633307 - FLAM_A SINE Alu -32 110 10 192 284 30 15 chr11 9150349 9150416 -139633056 - L2 LINE L2 -12 3301 3234 2226 105 0 7 chr11 9150528 9150822 -139632650 - AluSg SINE Alu -18 292 1 198 91 0 0 chr11 9150886 9150919 -139632553 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2484 57 10 19 chr11 9151598 9151912 -139631560 + AluY SINE Alu 1 311 0 2086 125 3 6 chr11 9151965 9152278 -139631194 + AluSx SINE Alu 1 312 0 834 161 73 0 chr11 9152293 9152430 -139631042 + AluSg/x SINE Alu 130 276 -36 224 39 39 39 chr11 9152437 9152489 -139630983 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr11 9153481 9153505 -139629967 + AT_rich Low_complexity Low_complexity 1 24 0 1371 197 37 54 chr11 9154322 9154617 -139628855 - AluJo SINE Alu -12 290 1 2456 77 3 0 chr11 9154914 9155212 -139628260 + AluSp SINE Alu 1 299 -14 2388 76 13 3 chr11 9155850 9156152 -139627320 + AluSq SINE Alu 1 305 -8 2187 109 3 0 chr11 9156646 9156940 -139626532 + AluSx SINE Alu 6 300 -12 2326 97 0 3 chr11 9157142 9157450 -139626022 - AluSx SINE Alu -5 307 1 423 109 0 0 chr11 9157621 9157676 -139625796 + Alu SINE Alu 238 292 -17 621 172 62 0 chr11 9157714 9157842 -139625630 + L1MB3 LINE L1 6041 6176 -7 224 308 175 17 chr11 9158433 9158553 -139624919 + MIR SINE MIR 75 213 -49 202 296 217 9 chr11 9158718 9158833 -139624639 + MIR SINE MIR 12 150 -112 1123 152 173 12 chr11 9158928 9159215 -139624257 + MER1B DNA MER1_type 1 338 -1 28 0 0 0 chr11 9159610 9159638 -139623834 + AT_rich Low_complexity Low_complexity 1 28 0 1432 181 55 15 chr11 9159638 9159909 -139623563 - AluJo SINE Alu -30 282 1 833 115 0 0 chr11 9161002 9161115 -139622357 - AluSg/x SINE Alu -10 299 187 832 237 10 5 chr11 9161246 9161444 -139622028 + L1MD3 LINE L1 7719 7917 -78 2147 130 3 0 chr11 9161582 9161883 -139621589 + AluSx SINE Alu 1 302 -10 363 82 16 0 chr11 9161930 9161991 -139621481 + L1MB8 LINE L1 5268 5329 -817 1543 106 128 0 chr11 9161992 9162218 -139621254 + AluSq SINE Alu 1 255 -58 929 142 43 6 chr11 9162229 9162391 -139621081 + AluSg/x SINE Alu 138 305 -5 2300 192 143 14 chr11 9162408 9163066 -139620406 + L1MB8 LINE L1 5324 6135 -49 2139 99 13 35 chr11 9163069 9163245 -139620227 - AluSx SINE Alu -6 306 139 2417 76 0 13 chr11 9163245 9163547 -139619925 - AluY SINE Alu -12 299 2 2139 99 13 35 chr11 9163547 9163683 -139619789 - AluSx SINE Alu -173 139 1 811 165 0 15 chr11 9163685 9163818 -139619654 - FLAM_C SINE Alu -12 131 1 2097 116 7 3 chr11 9164387 9164681 -139618791 - AluSx SINE Alu -17 295 1 867 153 0 29 chr11 9166339 9166476 -139616996 - FLAM_C SINE Alu 0 133 1 545 211 57 171 chr11 9166628 9166844 -139616628 + Charlie1a DNA MER1_type 11 250 -2511 330 26 0 0 chr11 9166844 9166883 -139616589 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 545 211 57 171 chr11 9166883 9166899 -139616573 + Charlie1a DNA MER1_type 250 266 -2495 1899 98 4 0 chr11 9166899 9167144 -139616328 - AluSp SINE Alu -67 246 1 545 211 57 171 chr11 9167144 9167185 -139616287 + Charlie1a DNA MER1_type 266 252 -2509 2259 95 0 0 chr11 9167185 9167479 -139615993 - AluY SINE Alu -17 294 1 545 211 57 171 chr11 9167479 9167502 -139615970 + Charlie1a DNA MER1_type 251 275 -1180 2275 70 0 0 chr11 9167502 9167773 -139615699 - AluSg SINE Alu -18 292 22 510 232 18 0 chr11 9167776 9167881 -139615591 + Charlie1a DNA MER1_type 547 656 -2105 2047 101 4 11 chr11 9167881 9168157 -139615315 + AluSp SINE Alu 1 274 -39 598 217 145 6 chr11 9168164 9168330 -139615142 + Charlie1a DNA MER1_type 1264 1452 -3 1820 80 121 15 chr11 9168836 9169100 -139614372 - AluY SINE Alu -19 292 1 338 306 83 6 chr11 9169328 9169508 -139613964 + L1ME LINE L1 5625 5818 -303 216 0 0 0 chr11 9169554 9169578 -139613894 + (TA)n Simple_repeat Simple_repeat 2 25 0 2458 77 0 0 chr11 9169578 9169876 -139613596 - AluSc SINE Alu -11 298 1 1632 219 215 4 chr11 9169911 9170428 -139613044 + L1ME2 LINE L1 5502 6127 -37 2161 106 0 3 chr11 9170775 9171079 -139612393 + AluSg1 SINE Alu 1 303 0 2435 94 0 0 chr11 9171131 9171440 -139612032 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr11 9171453 9171476 -139611996 + AT_rich Low_complexity Low_complexity 1 23 0 473 174 43 0 chr11 9171499 9171591 -139611881 + L1MB7 LINE L1 6080 6175 -9 676 248 44 60 chr11 9172235 9172550 -139610922 - L1M4 LINE L1 -2040 4106 3797 613 153 194 69 chr11 9172955 9173099 -139610373 - FRAM SINE Alu -4 162 1 2583 64 0 0 chr11 9173276 9173587 -139609885 - AluY SINE Alu 0 311 1 2131 113 0 13 chr11 9173806 9174108 -139609364 - AluSp SINE Alu -15 298 1 2173 70 11 0 chr11 9174313 9174586 -139608886 + AluSg SINE Alu 31 306 -4 440 259 133 14 chr11 9175173 9175316 -139608156 - MIR SINE MIR -102 160 1 292 225 28 14 chr11 9175549 9175620 -139607852 - MIR SINE MIR -114 148 77 39 22 0 0 chr11 9175674 9175720 -139607752 + AT_rich Low_complexity Low_complexity 1 46 0 478 114 29 0 chr11 9175931 9176001 -139607471 + AluS SINE Alu 225 296 -15 2368 52 42 0 chr11 9176024 9176313 -139607159 + AluY SINE Alu 1 301 -10 1788 138 10 52 chr11 9176362 9176667 -139606805 - AluJb SINE Alu -20 292 1 1216 218 45 8 chr11 9379151 9379417 -139404055 - AluJo SINE Alu -36 276 1 2450 53 3 17 chr11 9379448 9379749 -139403723 - AluY SINE Alu -14 297 1 1381 183 122 0 chr11 9379751 9380013 -139403459 - AluJo SINE Alu -7 295 2 646 93 131 19 chr11 9380124 9380231 -139403241 + MER21A LTR ERV1 15 133 -798 2088 123 0 3 chr11 9380231 9380515 -139402957 + AluSx SINE Alu 1 283 -29 495 227 7 27 chr11 9380611 9380761 -139402711 + MER39 LTR ERV1 219 365 -342 189 0 0 0 chr11 9381183 9381204 -139402268 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9381218 9381432 -139402040 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9381432 9381724 -139401748 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9381963 9382222 -139401250 - AluSq SINE Alu -53 260 1 1785 170 3 14 chr11 9382419 9382713 -139400759 + AluJo SINE Alu 9 299 -13 534 98 0 0 chr11 9382733 9382815 -139400657 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 200 224 15 0 chr11 9383474 9383541 -139399931 + CT-rich Low_complexity Low_complexity 1 68 0 237 277 128 69 chr11 9383789 9383977 -139399495 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9383996 9384302 -139399170 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9384324 9384650 -139398822 + L2 LINE L2 1728 2088 -1226 3270 146 2 28 chr11 9384671 9385205 -139398267 + MER1A DNA MER1_type 1 520 -9 2348 93 30 0 chr11 9385332 9385634 -139397838 + AluSx SINE Alu 1 311 -1 671 254 98 23 chr11 9386026 9386290 -139397182 + L2 LINE L2 2915 3198 -115 493 49 0 0 chr11 9386389 9386450 -139397022 + AluY SINE Alu 2 62 -256 1315 109 0 6 chr11 9386450 9386624 -139396848 + AluSg/x SINE Alu 95 267 -43 626 170 0 0 chr11 9386627 9386721 -139396751 + AluSg/x SINE Alu 72 165 -145 314 327 19 19 chr11 9387115 9387222 -139396250 - MLT1B-int LTR MaLR -509 862 756 1704 147 25 39 chr11 9387243 9387529 -139395943 - AluJo SINE Alu -30 282 1 783 186 0 0 chr11 9387710 9387839 -139395633 - FLAM_C SINE Alu -4 129 1 673 183 8 0 chr11 9388174 9388300 -139395172 - FLAM_A SINE Alu -5 137 11 225 333 0 0 chr11 9388314 9388392 -139395080 - MLT1B-int LTR MaLR -961 410 333 457 111 0 0 chr11 9388394 9388457 -139395015 - MLT1B LTR MaLR 0 390 328 1779 165 0 20 chr11 9388759 9389056 -139394416 - AluJo SINE Alu -21 291 1 357 312 16 24 chr11 9389224 9389349 -139394123 - L2 LINE L2 -1 3271 3148 2091 133 0 13 chr11 9390061 9390398 -139393074 - AluSx SINE Alu 0 312 1 612 144 17 0 chr11 9391007 9391180 -139392292 + (TA)n Simple_repeat Simple_repeat 1 176 0 383 154 51 29 chr11 9391181 9391356 -139392116 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr11 9391356 9391387 -139392085 + AT_rich Low_complexity Low_complexity 1 31 0 198 103 23 58 chr11 9391387 9391474 -139391998 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 373 192 92 67 chr11 9391477 9391597 -139391875 + L1MCa LINE L1 1952 2074 -4352 1604 174 30 33 chr11 9391722 9392021 -139391451 - AluJo SINE Alu -14 298 1 3229 157 33 117 chr11 9392288 9393052 -139390420 - MER21A LTR ERV1 -19 912 213 2436 84 3 0 chr11 9394004 9394314 -139389158 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9394315 9394616 -139388856 - AluSg1 SINE Alu -8 301 1 1997 150 0 0 chr11 9395490 9395776 -139387696 - AluJo SINE Alu -26 286 1 1664 164 27 14 chr11 9395961 9396254 -139387218 - AluJb SINE Alu -5 307 11 299 328 51 69 chr11 9396431 9396763 -139386709 - L2 LINE L2 -22 3250 2925 318 50 0 0 chr11 9397813 9397853 -139385619 + (CA)n Simple_repeat Simple_repeat 1 40 0 1958 132 16 13 chr11 9397988 9398291 -139385181 - AluSq SINE Alu -1 312 9 442 257 9 0 chr11 9398486 9398591 -139384881 - L2 LINE L2 -507 2807 2702 1017 147 0 85 chr11 9398628 9398805 -139384667 - AluJo SINE Alu -148 164 3 1355 144 5 0 chr11 9398825 9399026 -139384446 + AluSg/x SINE Alu 87 288 -24 342 98 0 0 chr11 9399027 9399078 -139384394 + (TG)n Simple_repeat Simple_repeat 1 51 0 445 295 58 31 chr11 9399221 9399546 -139383926 - L1MEd LINE L1 -4908 1211 878 488 290 141 19 chr11 9400382 9400644 -139382828 + L2 LINE L2 1832 2125 -1189 716 169 0 0 chr11 9400652 9400770 -139382702 + FLAM_C SINE Alu 7 124 -19 24 0 0 0 chr11 9400772 9400796 -139382676 + AT_rich Low_complexity Low_complexity 1 24 0 829 254 33 12 chr11 9400824 9401064 -139382408 + L2 LINE L2 2159 2403 -911 607 120 11 0 chr11 9401401 9401493 -139381979 - AluS SINE Alu -216 97 5 862 154 0 0 chr11 9401550 9401673 -139381799 + FLAM_C SINE Alu 3 125 -18 2293 219 70 10 chr11 9401728 9402239 -139381233 - MLT1F LTR MaLR 0 542 1 182 162 27 0 chr11 9402295 9402332 -139381140 + MIR SINE MIR 117 154 -108 216 111 0 0 chr11 9402347 9402383 -139381089 + (T)n Simple_repeat Simple_repeat 1 36 0 2209 105 7 3 chr11 9402948 9403244 -139380228 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 9403246 9403268 -139380204 + AT_rich Low_complexity Low_complexity 1 22 0 1127 288 65 47 chr11 9403381 9404104 -139379368 + MLT2F LTR ERVL 10 626 -2 1617 49 0 0 chr11 9404150 9404333 -139379139 + AluY SINE Alu 1 183 -128 1343 184 39 12 chr11 9404434 9404690 -139378782 - AluJo SINE Alu -49 263 1 2308 81 0 3 chr11 9404918 9405201 -139378271 - AluSx SINE Alu -30 282 1 207 0 0 0 chr11 9407852 9407875 -139375597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2409 100 3 0 chr11 9408127 9408437 -139375035 - AluSx SINE Alu -1 311 1 1570 108 0 5 chr11 9408608 9408820 -139374652 + AluSg/x SINE Alu 88 298 -14 21 36 0 0 chr11 9410554 9410582 -139372890 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 9410653 9410812 -139372660 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 9410812 9410890 -139372582 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 9411019 9411052 -139372420 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 9411585 9411886 -139371586 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 9412907 9413142 -139370330 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 9413657 9413750 -139369722 + MER5B DNA MER1_type 24 116 -62 1778 129 65 14 chr11 9413767 9414045 -139369427 - AluSx SINE Alu -12 300 9 2275 108 3 3 chr11 9414190 9414495 -139368977 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9414636 9414781 -139368691 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9414814 9414911 -139368561 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9415007 9415178 -139368294 + AluSg/x SINE Alu 113 286 -24 577 151 0 0 chr11 9415885 9415971 -139367501 - AluJ/FLAM SINE Alu -225 87 2 3956 171 4 19 chr11 9416071 9416101 -139367371 + L1M4 LINE L1 3239 3268 -2878 1702 167 14 3 chr11 9416101 9416395 -139367077 + AluJb SINE Alu 3 299 -13 3956 171 4 19 chr11 9416395 9417099 -139366373 + L1M4 LINE L1 3268 3962 -2184 300 247 74 39 chr11 9417506 9417737 -139365735 + L1MEc LINE L1 1428 1666 -4730 22 70 0 0 chr11 9417925 9417968 -139365504 + AT_rich Low_complexity Low_complexity 1 43 0 427 305 60 54 chr11 9418017 9418847 -139364625 + L1M4 LINE L1 4335 5169 -977 873 136 0 0 chr11 9418868 9418986 -139364486 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 9418986 9419016 -139364456 + AT_rich Low_complexity Low_complexity 1 30 0 2156 125 3 0 chr11 9419147 9419451 -139364021 + AluSx SINE Alu 3 307 -5 2368 115 0 0 chr11 9419554 9419858 -139363614 + AluSx SINE Alu 1 304 -8 2168 123 0 3 chr11 9420269 9420562 -139362910 - AluSg SINE Alu -18 292 1 1285 127 0 11 chr11 9420573 9420762 -139362710 - AluSx SINE Alu -14 298 112 650 234 135 35 chr11 9421127 9421209 -139362263 - L2 LINE L2 -266 3047 2975 1697 193 0 16 chr11 9421209 9421520 -139361952 - AluJb SINE Alu -6 306 1 650 234 135 35 chr11 9421520 9421838 -139361634 - L2 LINE L2 -338 2975 2596 2210 110 3 0 chr11 9421897 9422197 -139361275 - AluSp SINE Alu -12 301 1 1036 76 15 0 chr11 9422197 9422328 -139361144 - AluSx SINE Alu -175 137 5 595 242 124 60 chr11 9422341 9422655 -139360817 - L2 LINE L2 -797 2517 2184 * 1995 235 113 32 chr11 9422653 9423161 -139360311 + L2 LINE L2 2247 2826 -487 2375 94 7 3 chr11 9423161 9423469 -139360003 + AluSc SINE Alu 1 309 0 1995 235 113 32 chr11 9423469 9423677 -139359795 + L2 LINE L2 2826 3016 -297 195 139 0 0 chr11 9423817 9423853 -139359619 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2178 107 31 0 chr11 9423944 9424234 -139359238 + AluSx SINE Alu 1 299 -13 1755 180 27 3 chr11 9425093 9425393 -139358079 - AluJb SINE Alu -5 307 1 336 203 16 0 chr11 9425507 9425571 -139357901 + MER58 DNA MER1_type 2356 2420 0 510 280 56 36 chr11 9425874 9426225 -139357247 + L2 LINE L2 2889 3306 -7 977 311 107 28 chr11 9426416 9427088 -139356384 - L2 LINE L2 -1480 1834 1080 893 200 16 5 chr11 9427088 9427273 -139356199 + MER5A DNA MER1_type 1 187 -2 977 311 107 28 chr11 9427273 9427447 -139356025 - L2 LINE L2 -2234 1080 921 1715 221 21 18 chr11 9427454 9427834 -139355638 - MLT1E2 LTR MaLR 0 626 246 889 141 0 28 chr11 9427836 9427978 -139355494 - FLAM_C SINE Alu -5 138 1 1031 227 8 25 chr11 9428027 9428269 -139355203 - MLT1E2 LTR MaLR -388 238 1 387 293 64 16 chr11 9428340 9428528 -139354944 - L2 LINE L2 -2498 816 620 199 310 0 0 chr11 9428552 9428623 -139354849 + MER5A DNA MER1_type 36 106 -83 24 53 0 0 chr11 9428828 9428866 -139354606 + AT_rich Low_complexity Low_complexity 1 38 0 845 156 0 0 chr11 9428866 9428988 -139354484 - FLAM_C SINE Alu -16 127 6 4315 121 15 126 chr11 9429066 9430619 -139352853 + pTR5 LTR ERV1 741 2606 0 836 222 233 15 chr11 9430619 9431022 -139352450 + Charlie2b DNA MER1_type 176 666 -2116 811 208 49 70 chr11 9431112 9431279 -139352193 + Charlie2a DNA MER1_type 1528 1688 -1174 830 176 0 0 chr11 9431279 9431410 -139352062 + FLAM_C SINE Alu 3 133 0 811 208 49 70 chr11 9431410 9431526 -139351946 + Charlie2a DNA MER1_type 1688 1805 -1057 455 69 0 0 chr11 9431526 9431584 -139351888 - Alu SINE Alu -14 295 238 493 232 24 65 chr11 9431688 9431802 -139351670 + L2 LINE L2 2233 2339 -975 1507 177 10 20 chr11 9431802 9432096 -139351376 + AluJb SINE Alu 1 291 -21 493 232 24 65 chr11 9432096 9432149 -139351323 + L2 LINE L2 2339 2393 -921 2058 137 0 0 chr11 9432188 9432495 -139350977 - AluSx SINE Alu -5 307 1 1516 232 60 64 chr11 9432497 9432831 -139350641 + L2 LINE L2 2784 3116 -197 1436 179 32 21 chr11 9432831 9433116 -139350356 - AluJo SINE Alu -24 288 1 1516 232 60 64 chr11 9433116 9433312 -139350160 + L2 LINE L2 3116 3311 -2 488 172 0 50 chr11 9433747 9433846 -139349626 + FLAM SINE Alu 38 131 -12 22 0 0 0 chr11 9433846 9433868 -139349604 + AT_rich Low_complexity Low_complexity 1 22 0 2187 95 3 0 chr11 9433875 9434179 -139349293 + AluSp SINE Alu 1 305 -8 261 269 192 10 chr11 9434377 9434481 -139348991 - MLT1K LTR MaLR -355 233 111 240 266 203 28 chr11 9434937 9435080 -139348392 + L2 LINE L2 331 498 -2816 503 305 40 34 chr11 9435107 9435432 -139348040 + L2 LINE L2 603 929 -2385 509 386 92 16 chr11 9436050 9436560 -139346912 + L2 LINE L2 1831 2379 -935 2184 89 23 3 chr11 9436584 9436887 -139346585 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr11 9437013 9437041 -139346431 + AT_rich Low_complexity Low_complexity 1 28 0 2157 95 0 0 chr11 9437262 9437573 -139345899 + AluSx SINE Alu 1 311 0 1200 113 0 11 chr11 9437577 9437763 -139345709 + AluSg/x SINE Alu 129 312 0 2131 74 14 7 chr11 9438645 9438930 -139344542 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 9438933 9438962 -139344510 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 317 173 0 0 chr11 9439100 9439152 -139344320 - Tigger2a DNA MER2_type -67 377 326 729 138 9 0 chr11 9439156 9439272 -139344200 + L1 LINE L1 4699 4815 -1331 1669 112 84 21 chr11 9439282 9439568 -139343904 - Tigger2a DNA MER2_type -130 304 1 4514 179 32 34 chr11 9439810 9441338 -139342134 - L1MB2 LINE L1 -1 6170 4640 1866 117 29 0 chr11 9441338 9441611 -139341861 - AluSq SINE Alu -31 282 2 4514 179 32 34 chr11 9441611 9441765 -139341707 - L1MB2 LINE L1 -1531 4640 4501 2337 93 3 0 chr11 9441765 9442076 -139341396 - AluSp SINE Alu -1 312 1 4514 179 32 34 chr11 9442076 9442180 -139341292 - L1MB2 LINE L1 -1670 4501 4398 593 194 0 9 chr11 9442199 9442307 -139341165 - FLAM_C SINE Alu -12 131 25 2146 162 25 10 chr11 9442318 9442725 -139340747 - L1MB2 LINE L1 -1735 4411 3999 2309 82 3 0 chr11 9442852 9443155 -139340317 - AluSg SINE Alu -6 304 1 190 250 0 0 chr11 9443673 9443713 -139339759 - MIR SINE MIR -64 198 159 370 282 117 28 chr11 9444117 9444330 -139339142 + L2 LINE L2 2829 3060 -212 342 0 0 0 chr11 9444707 9444745 -139338727 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 940 236 64 130 chr11 9444881 9444939 -139338533 - MLT1G LTR MaLR -7 583 523 2175 101 0 0 chr11 9444939 9445237 -139338235 - AluSg1 SINE Alu -11 298 1 940 236 64 130 chr11 9445237 9445741 -139337731 - MLT1G LTR MaLR -67 523 58 626 207 52 0 chr11 9445934 9446050 -139337422 - MER68 LTR ERV1 0 562 441 1735 150 11 0 chr11 9446050 9446324 -139337148 + AluSx SINE Alu 1 277 -35 363 23 0 0 chr11 9446355 9446399 -139337073 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1033 171 0 0 chr11 9446420 9446590 -139336882 - AluJo/FRAM SINE Alu -8 304 135 1504 193 24 0 chr11 9446591 9446887 -139336585 - AluJb SINE Alu -9 303 1 358 85 34 34 chr11 9446888 9446947 -139336525 - MER68 LTR ERV1 -503 59 1 2194 106 3 3 chr11 9447021 9447332 -139336140 + AluSx SINE Alu 1 311 -1 946 132 7 13 chr11 9447346 9447498 -139335974 + AluSq/x SINE Alu 1 151 -161 956 158 0 0 chr11 9447599 9447751 -139335721 + AluJb SINE Alu 157 308 -4 2097 86 7 13 chr11 9448102 9448403 -139335069 - AluSg SINE Alu -11 299 1 757 132 0 47 chr11 9448441 9448570 -139334902 - FRAM SINE Alu -22 154 32 203 313 31 21 chr11 9448596 9448692 -139334780 + L2 LINE L2 2988 3084 -188 993 285 115 26 chr11 9448876 9449381 -139334091 - MLT1K LTR MaLR -12 576 27 1610 131 7 53 chr11 9449484 9449766 -139333706 + AluJo SINE Alu 31 299 -13 2242 113 0 0 chr11 9450567 9450878 -139332594 - AluSx SINE Alu -1 311 1 1914 140 7 0 chr11 9451748 9452041 -139331431 - AluSx SINE Alu -13 299 5 464 289 134 30 chr11 9452041 9452242 -139331230 + MIR SINE MIR 30 251 -11 306 378 30 22 chr11 9452321 9452456 -139331016 - L3b LINE CR1 -108 1475 1340 2219 90 0 29 chr11 9452491 9452802 -139330670 + AluSx SINE Alu 1 302 -10 195 232 12 98 chr11 9452906 9452988 -139330484 - L2 LINE L2 -11 3261 3187 889 260 64 35 chr11 9453422 9453734 -139329738 + MER102b DNA MER1_type 21 341 0 2130 103 0 0 chr11 9453986 9454276 -139329196 - AluSx SINE Alu -22 290 1 2011 128 27 0 chr11 9454440 9454737 -139328735 - AluSx SINE Alu -7 305 1 256 200 0 18 chr11 9454796 9454851 -139328621 - MLT1L LTR MaLR -16 599 546 1072 169 0 76 chr11 9454851 9455087 -139328385 - AluJb SINE Alu -9 303 86 302 146 0 0 chr11 9455087 9455135 -139328337 - MLT1L LTR MaLR -65 550 503 608 213 47 0 chr11 9455316 9455443 -139328029 - MLT1L LTR MaLR -341 274 142 1388 154 33 18 chr11 9455903 9456176 -139327296 - L1MB8 LINE L1 -2 6176 5900 1473 87 0 0 chr11 9456288 9456484 -139326988 + AluSg/x SINE Alu 117 312 0 225 178 0 0 chr11 9456657 9456702 -139326770 + T-rich Low_complexity Low_complexity 1 45 0 342 283 10 10 chr11 9457228 9457327 -139326145 - MIR3 SINE MIR -10 198 100 2460 50 3 0 chr11 9457377 9457675 -139325797 - AluSp SINE Alu -14 299 1 181 143 232 18 chr11 9459667 9459723 -139323749 - MIR3 SINE MIR -5 203 136 1417 238 88 7 chr11 9459736 9460143 -139323329 - L1ME1 LINE L1 -19 6147 5708 1529 213 47 14 chr11 9460143 9460410 -139323062 - L1MDa LINE L1 -3847 2693 2436 1959 145 0 0 chr11 9460410 9460713 -139322759 - AluSx SINE Alu -9 303 1 1529 213 47 14 chr11 9460713 9461035 -139322437 - L1MDa LINE L1 -4104 2436 2082 2080 121 0 0 chr11 9461052 9461350 -139322122 - AluSg SINE Alu -12 298 1 736 172 0 8 chr11 9461362 9461484 -139321988 - AluSq/x SINE Alu -184 129 9 193 292 97 0 chr11 9461496 9461568 -139321904 - MIR SINE MIR -103 105 27 216 0 0 0 chr11 9461577 9461601 -139321871 + (GA)n Simple_repeat Simple_repeat 1 24 0 1381 188 7 7 chr11 9461601 9461877 -139321595 - AluJb SINE Alu -34 278 3 1626 181 14 0 chr11 9461891 9462184 -139321288 - AluJb SINE Alu -11 301 5 2180 112 0 0 chr11 9462220 9462516 -139320956 - AluSx SINE Alu -16 296 1 204 207 35 52 chr11 9462899 9462957 -139320515 - L2 LINE L2 0 3272 3216 1761 130 67 0 chr11 9463587 9463857 -139319615 - AluSx SINE Alu -24 288 1 1043 140 0 0 chr11 9464174 9464324 -139319148 + AluSq/x SINE Alu 2 151 -162 404 170 53 23 chr11 9464425 9464522 -139318950 - AluSc SINE Alu -91 208 119 982 238 114 65 chr11 9464557 9464654 -139318818 - L1MC4a LINE L1 -1944 5864 5773 2028 105 23 10 chr11 9464654 9464959 -139318513 + AluSg SINE Alu 1 309 -1 982 238 114 65 chr11 9464959 9465150 -139318322 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9465150 9465184 -139318288 + (CA)n Simple_repeat Simple_repeat 2 35 0 982 238 114 65 chr11 9465184 9465340 -139318132 - L1MC4a LINE L1 -2215 5593 5397 1877 86 4 0 chr11 9466248 9466540 -139316932 + AluSg SINE Alu 37 329 0 559 192 0 0 chr11 9467290 9467389 -139316083 - U13 snRNA snRNA -2 102 4 227 261 11 57 chr11 9469116 9469204 -139314268 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9470847 9470904 -139312568 + GC_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr11 9470981 9471026 -139312446 + GC_rich Low_complexity Low_complexity 1 45 0 35 78 0 0 chr11 9471224 9471301 -139312171 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9471356 9471387 -139312085 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9471432 9471463 -139312009 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9471957 9471990 -139311482 + GC_rich Low_complexity Low_complexity 1 33 0 2138 98 3 22 chr11 9472713 9473029 -139310443 - AluSx SINE Alu -2 310 1 311 282 264 17 chr11 9473031 9473084 -139310388 - L1ME LINE L1 -386 5735 5696 1817 92 32 51 chr11 9473084 9473398 -139310074 - AluSx SINE Alu -4 308 1 311 282 264 17 chr11 9473398 9473518 -139309954 - L1ME LINE L1 -425 5696 5519 1576 179 41 0 chr11 9474063 9474354 -139309118 - AluSx SINE Alu -4 308 6 24 53 0 0 chr11 9474368 9474406 -139309066 + AT_rich Low_complexity Low_complexity 1 38 0 184 303 106 0 chr11 9474462 9474528 -139308944 - L3 LINE CR1 -1261 316 244 * 396 277 91 22 chr11 9474494 9474677 -139308795 - MIR SINE MIR -60 202 3 485 277 92 8 chr11 9476510 9476658 -139306814 - MIR3 SINE MIR -36 172 30 233 278 144 0 chr11 9477569 9477659 -139305813 + L1ME4a LINE L1 5353 5455 -2353 445 184 10 78 chr11 9477738 9477841 -139305631 - MER20 DNA MER1_type -5 214 119 322 276 71 63 chr11 9477844 9478010 -139305462 + L1ME4a LINE L1 5724 5895 -226 1610 153 44 0 chr11 9478010 9478323 -139305149 + AluJb SINE Alu 1 325 0 322 276 71 63 chr11 9478323 9478394 -139305078 + L1ME4a LINE L1 5895 5964 -157 36 23 0 0 chr11 9478586 9478629 -139304843 + AT_rich Low_complexity Low_complexity 1 43 0 1747 185 14 71 chr11 9478644 9478725 -139304747 + MLT1A1 LTR MaLR 1 85 -280 2030 94 0 30 chr11 9478725 9479022 -139304450 + AluSc SINE Alu 2 289 -20 1747 185 14 71 chr11 9479022 9479307 -139304165 + MLT1A1 LTR MaLR 85 346 -19 555 128 12 0 chr11 9479459 9479545 -139303927 + AluSg/x SINE Alu 212 298 -11 1770 172 7 0 chr11 9480279 9480570 -139302902 + AluJo SINE Alu 1 293 -19 31 0 0 0 chr11 9480624 9480655 -139302817 + AT_rich Low_complexity Low_complexity 1 31 0 233 304 108 39 chr11 9480873 9480975 -139302497 + LTR16B LTR ERVL 119 227 -237 1832 147 6 55 chr11 9481215 9481541 -139301931 - AluJb SINE Alu -2 310 1 1987 144 7 3 chr11 9481847 9482153 -139301319 + AluSx SINE Alu 1 307 -5 28 61 0 0 chr11 9482186 9482235 -139301237 + AT_rich Low_complexity Low_complexity 1 49 0 423 214 151 31 chr11 9482754 9482913 -139300559 - MIR3 SINE MIR -25 183 6 386 286 26 94 chr11 9483000 9483192 -139300280 + L2 LINE L2 3021 3199 -73 936 115 0 183 chr11 9483662 9483897 -139299575 - 7SK RNA RNA 0 193 2 872 211 100 21 chr11 9483983 9484125 -139299347 - MER33 DNA MER1_type -2273 312 183 2086 117 0 0 chr11 9484125 9484406 -139299066 + AluSq SINE Alu 19 299 -14 872 211 100 21 chr11 9484406 9484552 -139298920 - MER33 DNA MER1_type -2402 183 1 2187 106 0 3 chr11 9484854 9485176 -139298296 + AluY SINE Alu 1 321 0 189 0 0 0 chr11 9486259 9486280 -139297192 + (A)n Simple_repeat Simple_repeat 1 21 0 313 101 0 117 chr11 9486500 9486577 -139296895 + Alu SINE Alu 1 47 -255 947 195 5 70 chr11 9487740 9487955 -139295517 - AluJo SINE Alu -27 285 85 1495 205 10 27 chr11 9487956 9488253 -139295219 - AluJo SINE Alu -15 297 6 195 340 0 0 chr11 9488260 9488307 -139295165 + MIR SINE MIR 46 92 -170 2277 113 2 59 chr11 9488332 9488360 -139295112 - Tigger2a DNA MER2_type -2316 392 364 1387 155 143 19 chr11 9488360 9488618 -139294854 - AluSg SINE Alu -20 290 1 2277 113 2 59 chr11 9488618 9488998 -139294474 - Tigger2a DNA MER2_type -2344 364 7 309 296 144 8 chr11 9488999 9489124 -139294348 + MIR SINE MIR 103 244 -18 192 40 0 0 chr11 9489163 9489188 -139294284 + (CTG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr11 9489482 9489519 -139293953 + AT_rich Low_complexity Low_complexity 1 37 0 1597 187 3 47 chr11 9489519 9489819 -139293653 - AluJb SINE Alu -25 287 1 311 318 99 26 chr11 9490250 9490401 -139293071 + MIR3 SINE MIR 20 181 -27 198 0 0 0 chr11 9490819 9490841 -139292631 + (TA)n Simple_repeat Simple_repeat 2 23 0 403 225 181 0 chr11 9491002 9491162 -139292310 - L1MC4a LINE L1 -1860 5948 5760 24 32 0 0 chr11 9491336 9491367 -139292105 + AT_rich Low_complexity Low_complexity 1 31 0 287 246 43 14 chr11 9492227 9492296 -139291176 - MIR3 SINE MIR -51 157 87 195 324 14 28 chr11 9492481 9492552 -139290920 + L2 LINE L2 3239 3308 -5 6258 51 14 14 chr11 9493183 9493610 -139289862 + L1PA8A LINE L1 5254 5683 -448 2151 120 0 17 chr11 9493610 9493911 -139289561 + AluSq SINE Alu 3 298 -15 6258 51 14 14 chr11 9493911 9494332 -139289140 + L1PA8A LINE L1 5682 6102 -29 198 91 0 0 chr11 9494333 9494366 -139289106 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1161 142 25 15 chr11 9494409 9494613 -139288859 - AluJb SINE Alu -22 290 85 21 0 0 0 chr11 9494909 9494930 -139288542 + AT_rich Low_complexity Low_complexity 1 21 0 234 174 0 0 chr11 9495093 9495139 -139288333 + (CA)n Simple_repeat Simple_repeat 2 47 0 759 199 23 0 chr11 9495531 9495662 -139287810 + AluJo SINE Alu 1 134 -178 30 27 0 0 chr11 9495745 9495782 -139287690 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 9495822 9495843 -139287629 + AT_rich Low_complexity Low_complexity 1 21 0 2094 120 29 13 chr11 9495876 9496184 -139287288 - AluSq SINE Alu 0 313 1 1676 189 0 17 chr11 9496386 9496687 -139286785 - AluJo SINE Alu -16 296 1 2121 137 0 0 chr11 9496695 9497002 -139286470 - AluSx SINE Alu -5 307 1 1932 147 0 23 chr11 9497006 9497306 -139286166 - AluSx SINE Alu -19 293 1 1015 142 73 0 chr11 9497387 9497591 -139285881 - L1MA8 LINE L1 -3 6288 6070 1378 163 38 0 chr11 9497665 9497929 -139285543 + L1MB7 LINE L1 5895 6168 -16 1681 163 4 8 chr11 9498174 9498425 -139285047 + AluJo SINE Alu 1 250 -62 324 316 175 12 chr11 9499116 9499287 -139284185 - MIR SINE MIR -58 204 6 288 102 20 0 chr11 9499773 9499822 -139283650 - AluSp/q SINE Alu -7 296 247 2744 138 8 6 chr11 9499923 9500415 -139283057 + L1MB1 LINE L1 5298 5790 -378 698 139 8 23 chr11 9500415 9500537 -139282935 + L1PB2 LINE L1 6025 6151 0 1723 168 28 31 chr11 9500556 9500568 -139282904 + L1MB1 LINE L1 5769 5780 -388 2290 119 0 0 chr11 9500568 9500880 -139282592 + AluSx SINE Alu 1 312 0 1723 168 28 31 chr11 9500880 9501259 -139282213 + L1MB1 LINE L1 5780 6159 -9 22 56 0 0 chr11 9501973 9502009 -139281463 + AT_rich Low_complexity Low_complexity 1 36 0 186 385 68 17 chr11 9502818 9502935 -139280537 - L2 LINE L2 -14 3258 3136 1996 146 13 0 chr11 9502983 9503291 -139280181 + AluSx SINE Alu 1 312 0 438 234 0 0 chr11 9503560 9503667 -139279805 + L1MB7 LINE L1 6059 6165 -19 729 319 53 83 chr11 9503900 9504311 -139279161 - L2 LINE L2 0 3272 2874 1988 153 51 33 chr11 9504315 9504765 -139278707 + L1MB7 LINE L1 5727 6184 0 1790 160 16 44 chr11 9504955 9505274 -139278198 + AluJb SINE Alu 1 310 -2 192 40 0 0 chr11 9505988 9506013 -139277459 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1642 168 3 52 chr11 9506312 9506640 -139276832 - AluJo SINE Alu 0 312 1 313 117 39 0 chr11 9506651 9506728 -139276744 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr11 9506735 9506758 -139276714 + AT_rich Low_complexity Low_complexity 1 23 0 670 205 0 0 chr11 9506758 9506870 -139276602 - FLAM_C SINE Alu -25 118 7 198 91 0 0 chr11 9507048 9507081 -139276391 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 328 238 95 106 chr11 9507081 9507270 -139276202 + LTR67 LTR ERVL 32 218 -339 318 219 15 133 chr11 9507329 9507525 -139275947 + LTR67 LTR ERVL 363 535 -22 362 347 55 36 chr11 9507567 9507786 -139275686 + L2 LINE L2 2869 3091 -181 207 383 74 0 chr11 9507992 9508073 -139275399 + L2 LINE L2 3125 3211 -61 581 178 0 0 chr11 9508094 9508184 -139275288 + FLAM_C SINE Alu 29 118 -25 29 60 0 0 chr11 9508184 9508234 -139275238 + AT_rich Low_complexity Low_complexity 1 50 0 1744 88 161 4 chr11 9508390 9508651 -139274821 - AluSx SINE Alu 0 302 1 437 262 117 0 chr11 9509955 9510100 -139273372 + MIR SINE MIR 86 247 -15 430 299 7 0 chr11 9510113 9510257 -139273215 - L1ME LINE L1 -426 5695 5551 1064 137 37 0 chr11 9510462 9510623 -139272849 - AluSq SINE Alu -8 305 139 1825 153 13 32 chr11 9510625 9510933 -139272539 - AluJb SINE Alu -10 302 1 513 283 127 67 chr11 9510935 9511144 -139272328 - LTR67 LTR ERVL -60 497 302 2348 102 76 15 chr11 9511144 9511487 -139271985 - THE1B LTR MaLR 0 364 1 513 283 127 67 chr11 9511487 9511743 -139271729 - LTR67 LTR ERVL -255 302 4 928 245 69 4 chr11 9512056 9512289 -139271183 + MIR SINE MIR 1 248 -14 599 334 63 12 chr11 9512456 9512788 -139270684 - L2 LINE L2 -1108 2206 1858 1778 135 0 80 chr11 9513006 9513332 -139270140 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 9514260 9514282 -139269190 + AT_rich Low_complexity Low_complexity 1 22 0 1832 147 45 0 chr11 9514479 9514765 -139268707 + AluJb SINE Alu 1 299 -13 1402 154 123 11 chr11 9514777 9515037 -139268435 + AluSg SINE Alu 1 289 -21 1055 114 81 0 chr11 9515053 9515202 -139268270 + AluSg/x SINE Alu 134 294 -18 21 0 0 0 chr11 9515585 9515606 -139267866 + AT_rich Low_complexity Low_complexity 1 21 0 258 302 12 36 chr11 9516434 9516467 -139267005 + T-rich Low_complexity Low_complexity 4 36 -206 2222 119 0 0 chr11 9516467 9516769 -139266703 - AluSx SINE Alu -9 303 2 258 302 12 36 chr11 9516769 9516897 -139266575 + T-rich Low_complexity Low_complexity 36 242 0 1734 194 16 10 chr11 9517112 9517422 -139266050 - AluJo SINE Alu 0 312 1 460 266 94 0 chr11 9517765 9517893 -139265579 - MIR SINE MIR -6 256 117 403 266 165 19 chr11 9518107 9518265 -139265207 - MER5A DNA MER1_type 0 189 9 735 211 108 5 chr11 9518420 9518614 -139264858 + MER58C DNA MER1_type 2 215 0 279 274 142 25 chr11 9518654 9518858 -139264614 - L2 LINE L2 -464 2850 2623 270 190 138 0 chr11 9519060 9519118 -139264354 + MER112 DNA MER1_type 178 243 -17 186 303 40 50 chr11 9519218 9519317 -139264155 - L2 LINE L2 -887 2427 2330 2057 129 10 10 chr11 9519418 9519728 -139263744 - AluSx SINE Alu -2 310 1 1821 121 86 0 chr11 9520652 9520932 -139262540 - AluSx SINE Alu -8 304 1 22 0 0 0 chr11 9521034 9521056 -139262416 + AT_rich Low_complexity Low_complexity 1 22 0 720 151 8 0 chr11 9521056 9521175 -139262297 + AluSq/x SINE Alu 1 120 -193 360 0 0 0 chr11 9521186 9521226 -139262246 + (TA)n Simple_repeat Simple_repeat 2 41 0 2204 120 0 3 chr11 9521226 9521526 -139261946 - AluSc SINE Alu -10 299 1 289 228 65 16 chr11 9521689 9521812 -139261660 + L1ME4a LINE L1 5989 6117 -4 7698 61 10 6 chr11 9522043 9523403 -139260069 - L1P2 LINE L1 -529 5625 4264 625 183 7 10 chr11 9523513 9523648 -139259824 - LTR27 LTR ERV1 -213 423 299 926 147 11 17 chr11 9523715 9523892 -139259580 - LTR28 LTR ERV1 -844 176 1 202 354 0 0 chr11 9523916 9523981 -139259491 - L2 LINE L2 -940 2374 2310 581 306 83 20 chr11 9523996 9524073 -139259399 + L2 LINE L2 2084 2155 -1159 2218 158 85 5 chr11 9524073 9524460 -139259012 + MER47B DNA MER2_type 1 418 0 581 306 83 20 chr11 9524460 9524634 -139258838 + L2 LINE L2 2155 2351 -963 1620 119 0 4 chr11 9524964 9525191 -139258281 - AluSc SINE Alu -83 226 1 346 204 64 14 chr11 9525339 9525493 -139257979 + L1ME4a LINE L1 1196 6118 0 2142 97 14 10 chr11 9526444 9526732 -139256740 + AluSg SINE Alu 1 289 -21 892 123 0 0 chr11 9526732 9526849 -139256623 - AluJo/FLAM SINE Alu -183 129 13 679 206 85 11 chr11 9526927 9527116 -139256356 - L1MC5 LINE L1 -68 7893 7691 21 82 0 0 chr11 9528613 9528662 -139254810 + AT_rich Low_complexity Low_complexity 1 49 0 2091 107 24 7 chr11 9528848 9529139 -139254333 - AluSg SINE Alu -14 296 1 1188 142 9 0 chr11 9529359 9529570 -139253902 - L1PA16 LINE L1 -153 6013 5801 300 207 187 20 chr11 9529731 9529881 -139253591 + MIR SINE MIR 14 188 -74 318 277 0 0 chr11 9529926 9530009 -139253463 + L1MC/D LINE L1 5725 5807 -2001 25 0 0 0 chr11 9530417 9530442 -139253030 + AT_rich Low_complexity Low_complexity 1 25 0 366 210 59 183 chr11 9530680 9530899 -139252573 - MIR3 SINE MIR -13 195 4 28 0 0 0 chr11 9532262 9532290 -139251182 + AT_rich Low_complexity Low_complexity 1 28 0 1231 119 0 97 chr11 9532392 9532619 -139250853 - MER46A DNA MER2_type 0 236 32 773 162 14 0 chr11 9532637 9532785 -139250687 - L1MD3 LINE L1 -1999 5996 5847 1533 161 61 7 chr11 9533081 9533360 -139250112 - AluJo SINE Alu -18 294 1 23 101 0 0 chr11 9533460 9533539 -139249933 + AT_rich Low_complexity Low_complexity 1 79 0 1091 253 30 33 chr11 9533626 9533993 -139249479 - L1MC4a LINE L1 -1833 5975 5610 4065 183 51 20 chr11 9534152 9535368 -139248104 - L1M4c LINE L1 -4831 2024 872 654 119 50 10 chr11 9535374 9535475 -139247997 + FLAM_C SINE Alu 9 113 -30 287 193 0 0 chr11 9535505 9535562 -139247910 - L1M4c LINE L1 -5978 881 825 * 1746 216 48 20 chr11 9535561 9535960 -139247512 - L1M4c LINE L1 -6439 420 11 2159 90 0 0 chr11 9536051 9536353 -139247119 + AluSc SINE Alu 1 302 0 298 297 143 0 chr11 9536904 9536995 -139246477 - L2 LINE L2 -1 3271 3168 1739 135 50 30 chr11 9537020 9537317 -139246155 + AluJo SINE Alu 1 303 -9 551 211 92 0 chr11 9537346 9537455 -139246017 - MER94 DNA DNA 0 134 16 25 75 0 0 chr11 9539727 9539780 -139243692 + AT_rich Low_complexity Low_complexity 1 53 0 188 198 62 123 chr11 9540206 9540287 -139243185 - MER5A DNA MER1_type 0 189 114 934 185 121 24 chr11 9540291 9540540 -139242932 + AluSg SINE Alu 35 307 -3 28 48 0 0 chr11 9540690 9540732 -139242740 + AT_rich Low_complexity Low_complexity 1 42 0 1970 110 10 14 chr11 9540780 9541071 -139242401 - AluSc SINE Alu -19 290 1 7580 25 0 0 chr11 9541338 9542211 -139241261 - L1PA3 LINE L1 -3 6152 5280 328 264 365 6 chr11 9542497 9542664 -139240808 + MIR SINE MIR 16 242 -20 585 254 258 10 chr11 9542687 9542982 -139240490 + L3 LINE CR1 685 1052 -525 407 279 39 16 chr11 9542991 9543120 -139240352 - MIR SINE MIR -21 241 110 501 293 86 82 chr11 9543141 9543690 -139239782 - LTR67 LTR ERVL -4 553 3 289 279 89 0 chr11 9543738 9543817 -139239655 + L2 LINE L2 3228 3313 0 948 269 142 24 chr11 9543819 9544242 -139239230 + L3 LINE CR1 1042 1514 -63 317 251 280 23 chr11 9544493 9544668 -139238804 + MIR SINE MIR 30 249 -13 631 279 71 5 chr11 9544783 9544980 -139238492 + MIR SINE MIR 53 262 0 191 303 61 15 chr11 9545052 9545118 -139238354 + MIR3 SINE MIR 109 177 -31 815 207 52 123 chr11 9545569 9545878 -139237594 - LTR41 LTR ERVL -17 756 470 659 186 124 12 chr11 9545965 9546126 -139237346 - LTR41 LTR ERVL -594 179 1 754 204 137 31 chr11 9546159 9546385 -139237087 + MIR SINE MIR 11 260 -2 2312 73 0 19 chr11 9546572 9546889 -139236583 - AluY SINE Alu 0 311 1 2119 84 0 11 chr11 9547435 9547749 -139235723 + AluSx SINE Alu 1 311 0 21 36 0 0 chr11 9550262 9550290 -139233182 + AT_rich Low_complexity Low_complexity 1 28 0 2053 47 0 4 chr11 9550830 9551086 -139232386 + AluY SINE Alu 47 301 -10 1352 133 38 0 chr11 9551103 9551314 -139232158 + MER20 DNA MER1_type 1 219 0 1391 227 174 10 chr11 9551983 9552467 -139231005 + L1ME3 LINE L1 5580 6142 -20 1823 118 35 0 chr11 9552507 9552795 -139230677 - AluSx SINE Alu -14 298 1 207 286 91 13 chr11 9553898 9553975 -139229497 + MIR SINE MIR 20 102 -160 282 93 0 0 chr11 9555221 9555264 -139228208 + MADE1 DNA Mariner 38 80 0 351 241 120 8 chr11 9555854 9555987 -139227485 - MIR SINE MIR -68 194 47 250 132 0 57 chr11 9557452 9557505 -139225967 + L2 LINE L2 3223 3272 0 427 358 53 24 chr11 9558105 9558351 -139225121 + L2 LINE L2 2578 2830 -484 296 266 22 43 chr11 9558374 9558500 -139224972 + (TGGA)n Simple_repeat Simple_repeat 1 123 -57 2261 97 10 0 chr11 9558500 9558808 -139224664 + AluSq SINE Alu 1 311 -2 296 266 22 43 chr11 9558808 9558865 -139224607 + (TGGA)n Simple_repeat Simple_repeat 123 180 0 1931 240 48 26 chr11 9559156 9559966 -139223506 - L2 LINE L2 0 3313 2482 264 219 25 50 chr11 9560394 9560513 -139222959 + (TA)n Simple_repeat Simple_repeat 1 116 0 915 221 13 24 chr11 9560815 9561038 -139222434 + MLT1A1 LTR MaLR 173 365 0 909 239 6 0 chr11 9561165 9561332 -139222140 - MER5A DNA MER1_type -21 168 1 1382 323 113 23 chr11 9561804 9562798 -139220674 + L2 LINE L2 1606 2688 -626 205 219 62 16 chr11 9563353 9563417 -139220055 - MIR3 SINE MIR -33 175 109 412 264 33 30 chr11 9563862 9564008 -139219464 + MIR SINE MIR 1 149 -59 236 258 18 126 chr11 9564488 9564655 -139218817 + L2 LINE L2 2966 3114 -158 2942 67 14 3 chr11 9565093 9565464 -139218008 + THE1C LTR MaLR 1 375 0 2110 147 68 66 chr11 9565817 9566315 -139217157 - MLT1D LTR MaLR -2 503 5 239 259 36 9 chr11 9566450 9566562 -139216910 + LTR16B LTR ERVL 291 405 -59 940 284 46 18 chr11 9566569 9566851 -139216621 + ERVL LTR ERVL 1739 2028 -2968 840 314 20 4 chr11 9566891 9567146 -139216326 + ERVL LTR ERVL 4254 4512 -1252 303 311 42 36 chr11 9567171 9567364 -139216108 + ERVL LTR ERVL 4935 5128 -636 351 308 23 0 chr11 9567476 9567609 -139215863 + ERVL LTR ERVL 5191 5326 -328 2203 218 78 53 chr11 9567754 9567804 -139215668 - MER65A-int LTR ERV1 -3972 899 852 1781 159 7 0 chr11 9567804 9568099 -139215373 - AluSx SINE Alu -8 304 8 2203 218 78 53 chr11 9568099 9568150 -139215322 - MER65A-int LTR ERV1 -4019 852 804 1893 139 0 0 chr11 9568150 9568476 -139214996 - AluJb SINE Alu 0 326 1 2203 218 78 53 chr11 9568476 9568870 -139214602 - MER65A-int LTR ERV1 -4067 804 376 3793 41 5 2 chr11 9568870 9569311 -139214161 - MLT2A1 LTR ERVL -2 442 1 2203 218 78 53 chr11 9569311 9569513 -139213959 - MER65A-int LTR ERV1 -4495 376 181 2883 152 46 67 chr11 9569513 9570126 -139213346 + LTR9 LTR ERV1 1 600 -12 288 287 16 25 chr11 9570153 9570275 -139213197 - MER65A-int LTR ERV1 -4703 168 48 2712 111 27 36 chr11 9570319 9570377 -139213095 - MER65A LTR ERV1 0 445 388 2353 122 71 29 chr11 9570377 9570417 -139213055 - MSTA LTR MaLR 0 428 391 2840 6 0 0 chr11 9570417 9570733 -139212739 + AluYb8 SINE Alu 1 316 -2 2353 122 71 29 chr11 9570733 9570745 -139212727 - MSTA LTR MaLR -37 391 381 1777 160 24 0 chr11 9570745 9571038 -139212434 + AluJo SINE Alu 2 301 -11 2353 122 71 29 chr11 9571038 9571395 -139212077 - MSTA LTR MaLR -47 381 1 2712 111 27 36 chr11 9571395 9571744 -139211728 - MER65A LTR ERV1 -57 388 40 252 59 0 0 chr11 9571744 9571778 -139211694 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2712 111 27 36 chr11 9571778 9571818 -139211654 - MER65A LTR ERV1 -405 40 1 1309 267 55 0 chr11 9571825 9572155 -139211317 + LTR16B LTR ERVL 9 356 -108 450 161 354 15 chr11 9572250 9572380 -139211092 + MER5A DNA MER1_type 16 189 0 331 301 116 7 chr11 9572473 9572619 -139210853 - MIR3 SINE MIR -43 165 4 361 291 0 0 chr11 9572684 9572770 -139210702 + MER21B LTR ERV1 1 86 -777 1267 215 109 15 chr11 9572842 9573400 -139210072 + MER21B LTR ERV1 98 754 -109 561 172 203 44 chr11 9573453 9573680 -139209792 + MER33 DNA MER1_type 62 324 0 4606 147 62 25 chr11 9574125 9575003 -139208469 - MER4D LTR ERV1 0 872 1 2084 55 0 36 chr11 9575459 9575734 -139207738 + AluY SINE Alu 38 302 -9 21 0 0 0 chr11 9576574 9576595 -139206877 + AT_rich Low_complexity Low_complexity 1 21 0 1837 133 30 10 chr11 9579278 9579578 -139203894 + AluJb SINE Alu 1 306 -6 494 274 116 3 chr11 9579580 9579933 -139203539 + L1ME4a LINE L1 5203 5597 -743 2273 94 3 0 chr11 9579966 9580274 -139203198 + AluSx SINE Alu 1 309 -3 227 343 0 0 chr11 9581212 9581279 -139202193 + L2 LINE L2 3206 3272 0 268 204 148 37 chr11 9582040 9582148 -139201324 + L1ME4a LINE L1 6000 6119 -2 294 273 230 21 chr11 9582394 9582581 -139200891 + MIR SINE MIR 32 257 -5 2361 66 0 14 chr11 9582650 9582937 -139200535 - AluSc SINE Alu -23 286 4 2247 82 0 50 chr11 9584337 9584656 -139198816 - AluY SINE Alu -8 303 1 1903 264 107 35 chr11 9585154 9585801 -139197671 - MER115 DNA AcHobo 0 693 1 703 209 68 12 chr11 9587288 9587451 -139196021 + MER5B DNA MER1_type 1 172 -6 2108 104 7 0 chr11 9587906 9588194 -139195278 + AluSx SINE Alu 6 295 -17 192 143 89 54 chr11 9588437 9588493 -139194979 + MIR3 SINE MIR 143 200 -8 1725 137 0 83 chr11 9588517 9588830 -139194642 - AluJb SINE Alu -25 287 1 394 259 118 22 chr11 9588911 9589046 -139194426 - MIR SINE MIR -30 232 85 941 170 0 82 chr11 9589088 9589135 -139194337 - MER5B DNA MER1_type 0 178 129 2118 140 0 3 chr11 9589135 9589443 -139194029 - AluSx SINE Alu -5 307 1 941 170 0 82 chr11 9589443 9589589 -139193883 - MER5B DNA MER1_type -49 129 1 1043 179 10 0 chr11 9589739 9589957 -139193515 + AluJb SINE Alu 87 306 0 1956 124 32 38 chr11 9590145 9590459 -139193013 + AluSx SINE Alu 1 312 0 597 249 24 83 chr11 9590984 9591237 -139192235 - MIR SINE MIR -8 254 17 503 281 59 59 chr11 9591863 9592119 -139191353 - MIR SINE MIR -6 256 1 1902 112 11 21 chr11 9593444 9593729 -139189743 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr11 9593729 9593760 -139189712 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2493 69 0 19 chr11 9594415 9594732 -139188740 + AluY SINE Alu 1 311 0 809 185 94 22 chr11 9595590 9595706 -139187766 - L1MC/D LINE L1 -743 5403 5297 1865 179 3 0 chr11 9595706 9596002 -139187470 + AluSx SINE Alu 1 297 -15 809 185 94 22 chr11 9596002 9596141 -139187331 - L1MC/D LINE L1 -849 5297 5167 27 0 0 0 chr11 9596141 9596168 -139187304 + AT_rich Low_complexity Low_complexity 1 27 0 2429 59 0 3 chr11 9596168 9596457 -139187015 - AluY SINE Alu -23 288 1 831 158 24 0 chr11 9596467 9596594 -139186878 - FLAM_C SINE Alu -1 132 3 644 209 44 0 chr11 9596601 9596759 -139186713 - L1MC/D LINE L1 -2811 3335 3171 30 27 0 0 chr11 9598755 9598792 -139184680 + AT_rich Low_complexity Low_complexity 1 37 0 625 281 98 72 chr11 9599496 9599884 -139183588 + HAL1 LINE L1 73 482 -2025 183 42 0 0 chr11 9599884 9599908 -139183564 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 625 281 98 72 chr11 9599908 9600102 -139183370 + HAL1 LINE L1 482 670 -1837 1777 233 24 9 chr11 9600191 9600616 -139182856 - L1ME1 LINE L1 -5 6161 5731 1108 201 97 37 chr11 9600617 9600712 -139182760 - L1MD2 LINE L1 -315 6044 5956 1967 164 0 3 chr11 9600712 9601010 -139182462 + AluSx SINE Alu 1 297 -15 1108 201 97 37 chr11 9601010 9601213 -139182259 - L1MD2 LINE L1 -403 5956 5728 2108 101 3 7 chr11 9601373 9601670 -139181802 - AluSc SINE Alu -13 296 1 232 337 50 40 chr11 9601798 9601899 -139181573 - L2 LINE L2 -48 3224 3123 349 191 24 36 chr11 9601993 9602077 -139181395 + MIR SINE MIR 180 262 0 858 193 99 9 chr11 9602443 9602666 -139180806 + L1MB8 LINE L1 5931 6173 -5 1263 124 0 0 chr11 9603090 9603281 -139180191 - L1PA16 LINE L1 -194 5957 5767 22 35 0 0 chr11 9604607 9604636 -139178836 + AT_rich Low_complexity Low_complexity 1 29 0 776 206 0 0 chr11 9604935 9605066 -139178406 + AluSq/x SINE Alu 3 133 -180 2171 115 3 3 chr11 9605294 9605589 -139177883 - AluSx SINE Alu -12 300 6 528 194 0 40 chr11 9605611 9605735 -139177737 + L1MB7 LINE L1 6051 6169 -15 2106 133 3 3 chr11 9605743 9606044 -139177428 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr11 9606202 9606224 -139177248 + AT_rich Low_complexity Low_complexity 1 22 0 5033 95 37 1 chr11 9606431 9607107 -139176365 + L1PA15 LINE L1 5463 6162 -3 719 141 0 0 chr11 9607584 9607683 -139175789 + AluJ/FLAM SINE Alu 2 100 -212 262 225 142 33 chr11 9608958 9609078 -139174394 - L1ME4a LINE L1 -1 6120 5988 2151 102 10 7 chr11 9609080 9609373 -139174099 - AluSc SINE Alu -15 294 1 2089 134 0 7 chr11 9609407 9609713 -139173759 + AluSx SINE Alu 1 304 -8 630 158 17 25 chr11 9610040 9610160 -139173312 + L1MB2 LINE L1 6038 6156 -15 255 196 0 20 chr11 9610168 9610219 -139173253 + L1ME LINE L1 5615 5664 -457 1677 127 13 71 chr11 9610908 9611216 -139172256 + AluSc SINE Alu 3 292 -17 211 300 0 17 chr11 9611236 9611296 -139172176 + GA-rich Low_complexity Low_complexity 3 61 0 228 246 0 0 chr11 9612377 9612438 -139171034 + (TA)n Simple_repeat Simple_repeat 1 61 0 1286 179 71 40 chr11 9613374 9613671 -139169801 + AluJb SINE Alu 5 310 -2 2407 87 3 0 chr11 9613693 9613992 -139169480 - AluSp SINE Alu -13 300 1 2405 76 0 0 chr11 9614479 9614769 -139168703 - AluSp SINE Alu -23 290 1 21 0 0 0 chr11 9615380 9615401 -139168071 + AT_rich Low_complexity Low_complexity 1 21 0 394 335 158 28 chr11 9616326 9616522 -139166950 + L2 LINE L2 2942 3188 -84 2430 96 207 5 chr11 9616522 9616909 -139166563 + MER4C LTR ERV1 1 465 0 394 335 158 28 chr11 9616909 9616996 -139166476 + L2 LINE L2 3188 3262 -10 492 211 48 80 chr11 9617366 9617658 -139165814 - MER112 DNA MER1_type -8 252 1 518 276 99 5 chr11 9617795 9617987 -139165485 - MIR SINE MIR 0 262 53 2673 33 0 0 chr11 9618006 9618307 -139165165 - AluY SINE Alu -10 301 1 204 309 29 15 chr11 9618533 9618601 -139164871 + L2 LINE L2 3187 3255 -17 323 221 15 0 chr11 9618633 9618701 -139164771 + MIR SINE MIR 54 122 -86 221 269 0 30 chr11 9619212 9619279 -139164193 + GA-rich Low_complexity Low_complexity 2 66 0 2392 89 0 19 chr11 9620025 9620340 -139163132 + AluSc SINE Alu 1 309 0 2845 110 106 9 chr11 9620805 9621231 -139162241 + MLT1C LTR MaLR 1 467 0 820 311 196 36 chr11 9621589 9622452 -139161020 + L3 LINE CR1 480 1480 -97 332 164 15 0 chr11 9622453 9622520 -139160952 + (TG)n Simple_repeat Simple_repeat 2 69 0 1941 83 0 149 chr11 9622538 9622888 -139160584 - AluSq SINE Alu -15 298 1 1791 148 16 26 chr11 9622998 9623302 -139160170 + AluJo SINE Alu 1 301 -11 899 125 0 0 chr11 9624758 9624886 -139158586 + FLAM_C SINE Alu 16 143 0 294 29 0 0 chr11 9625303 9625338 -139158134 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 411 143 12 168 chr11 9626041 9626202 -139157270 - MER104 DNA Tc2 -3 177 42 2468 90 0 0 chr11 9626208 9626520 -139156952 + AluSx SINE Alu 1 312 0 1887 153 7 7 chr11 9626749 9627049 -139156423 - AluJb SINE Alu -12 300 1 261 264 11 22 chr11 9628183 9628274 -139155198 + GA-rich Low_complexity Low_complexity 5 94 0 891 161 0 0 chr11 9628361 9628491 -139154981 - FLAM_C SINE Alu -3 130 1 2502 64 0 16 chr11 9629159 9629470 -139154002 - AluY SINE Alu -5 306 1 595 104 26 149 chr11 9629482 9629525 -139153947 - L1MB4 LINE L1 -6 6174 6127 2340 75 17 0 chr11 9629525 9629819 -139153653 - AluSp SINE Alu -14 299 1 595 104 26 149 chr11 9629819 9629830 -139153642 - L1MB4 LINE L1 -53 6127 6116 2203 94 3 0 chr11 9629830 9630116 -139153356 - AluSp SINE Alu 0 313 27 595 104 26 149 chr11 9630116 9630214 -139153258 - L1MB4 LINE L1 -64 6116 6040 1613 224 52 72 chr11 9630986 9631088 -139152384 - L1ME3A LINE L1 -99 6140 6037 1726 145 10 52 chr11 9631088 9631398 -139152074 + AluJo SINE Alu 2 298 -14 1613 224 52 72 chr11 9631398 9631834 -139151638 - L1ME3A LINE L1 -202 6037 5613 * 1934 246 108 62 chr11 9631833 9632940 -139150532 - L1ME3A LINE L1 -945 5270 4113 360 286 0 0 chr11 9633201 9633299 -139150173 - L1ME3A LINE L1 -2262 3953 3856 589 258 52 34 chr11 9633353 9633497 -139149975 - L1ME3A LINE L1 -3921 2475 2335 2264 93 0 0 chr11 9633497 9633786 -139149686 - AluSc SINE Alu -20 289 1 589 258 52 34 chr11 9633786 9633990 -139149482 - L1ME3A LINE L1 -4061 2335 2121 578 220 64 7 chr11 9634762 9634903 -139148569 + MER58B DNA MER1_type 191 339 -2 2185 88 6 50 chr11 9635513 9635830 -139147642 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 9636663 9636684 -139146788 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 3 10 chr11 9637090 9637391 -139146081 - AluSx SINE Alu -13 299 1 22 0 0 0 chr11 9639350 9639372 -139144100 + AT_rich Low_complexity Low_complexity 1 22 0 416 102 17 0 chr11 9639374 9639433 -139144039 - U7 snRNA snRNA -2 61 2 949 209 51 105 chr11 9640117 9640307 -139143165 + L1MC4 LINE L1 7620 7819 -223 1282 69 0 17 chr11 9640307 9640482 -139142990 + L1PA8 LINE L1 6001 6172 0 949 209 51 105 chr11 9640482 9640721 -139142751 + L1MC4 LINE L1 7819 8026 -16 28 0 0 0 chr11 9641430 9641458 -139142014 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 9643271 9643292 -139140180 + AT_rich Low_complexity Low_complexity 1 21 0 460 236 73 73 chr11 9644617 9644795 -139138677 - MER5B DNA MER1_type 0 178 1 297 254 70 0 chr11 9644811 9644882 -139138590 - MIR3 SINE MIR -52 156 81 282 56 0 0 chr11 9645790 9645826 -139137646 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1843 158 0 7 chr11 9645826 9646104 -139137368 - AluJo SINE Alu -26 286 11 362 327 12 48 chr11 9646326 9646410 -139137062 + L1MC4a LINE L1 5777 5854 -1954 2349 102 0 6 chr11 9646410 9646724 -139136748 + AluSx SINE Alu 1 312 0 362 327 12 48 chr11 9646724 9646807 -139136665 + L1MC4a LINE L1 5854 5938 -1870 1798 150 3 18 chr11 9647321 9647633 -139135839 - AluJb SINE Alu 0 308 1 387 272 35 26 chr11 9647719 9647833 -139135639 - MER5A DNA MER1_type -30 159 45 300 324 42 35 chr11 9647720 9647862 -139135610 + MER5A DNA MER1_type 43 185 -4 * 2543 153 84 19 chr11 9648396 9648964 -139134508 + L1MB4 LINE L1 5575 6179 -1 1648 149 38 60 chr11 9650133 9650449 -139133023 - AluJo SINE Alu -3 309 1 834 248 220 28 chr11 9651134 9651633 -139131839 - L2 LINE L2 -2 3311 2716 2629 43 0 0 chr11 9652343 9652643 -139130829 - AluY SINE Alu -11 300 1 351 294 203 0 chr11 9653074 9653227 -139130245 - MIR SINE MIR -8 254 71 27 49 0 0 chr11 9653286 9653327 -139130145 + AT_rich Low_complexity Low_complexity 1 41 0 1270 109 5 65 chr11 9655818 9656019 -139127453 - AluJb SINE Alu -11 301 113 231 108 0 0 chr11 9656022 9656059 -139127413 + Alu SINE Alu 198 234 -65 875 145 0 0 chr11 9656063 9656187 -139127285 - AluJb SINE Alu -188 124 1 1134 180 88 0 chr11 9656574 9656760 -139126712 - MER46A DNA MER2_type -2495 236 27 1517 173 40 40 chr11 9656760 9656938 -139126534 - AluJo SINE Alu -12 300 120 2365 109 0 0 chr11 9656938 9657240 -139126232 + AluSx SINE Alu 1 302 -10 1517 173 40 40 chr11 9657240 9657361 -139126111 - AluJo SINE Alu -191 121 1 1134 180 88 0 chr11 9657361 9657391 -139126081 - MER46A DNA MER2_type -2704 27 1 39 38 0 0 chr11 9658278 9658331 -139125141 + AT_rich Low_complexity Low_complexity 1 53 0 1876 163 0 0 chr11 9659951 9660240 -139123232 - AluJb SINE Alu -21 291 3 1264 165 5 27 chr11 9660463 9660687 -139122785 - AluJb SINE Alu -9 303 85 21 36 0 0 chr11 9660804 9660832 -139122640 + AT_rich Low_complexity Low_complexity 1 28 0 199 285 123 62 chr11 9660832 9660962 -139122510 - MIR SINE MIR -1 261 124 1648 186 33 3 chr11 9660965 9661266 -139122206 + AluSx SINE Alu 3 312 0 478 171 51 68 chr11 9661291 9661408 -139122064 - MIR SINE MIR -135 127 13 296 259 73 0 chr11 9661414 9661542 -139121930 - L1ME LINE L1 -345 5817 5682 3925 148 24 6 chr11 9661774 9662579 -139120893 + L1MA4 LINE L1 4634 5443 -743 1819 55 47 8 chr11 9662579 9662832 -139120640 + L1MA2 LINE L1 6037 6301 -3 4802 123 56 2 chr11 9662878 9663701 -139119771 + L1MA4 LINE L1 5428 6294 -6 247 67 67 0 chr11 9663701 9663746 -139119726 - L1MC5 LINE L1 -311 7650 7603 2043 55 3 86 chr11 9663770 9664060 -139119412 + AluY SINE Alu 5 270 -41 189 74 0 0 chr11 9664065 9664092 -139119380 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1578 210 72 71 chr11 9664157 9664808 -139118664 - L1MC5 LINE L1 -392 7569 6918 1662 113 0 0 chr11 9664871 9665093 -139118379 - AluSg/x SINE Alu -11 301 80 6864 139 11 9 chr11 9665093 9666247 -139117225 + L1P LINE L1 3828 4986 -1160 2302 91 0 3 chr11 9666247 9666544 -139116928 + AluSc SINE Alu 1 296 -13 6864 139 11 9 chr11 9666544 9666608 -139116864 + L1P LINE L1 4986 5048 -1098 880 97 28 28 chr11 9666739 9666883 -139116589 + AluY SINE Alu 168 311 0 7928 84 22 2 chr11 9666883 9668102 -139115370 + L1PA11 LINE L1 3294 4536 -1610 4587 111 44 0 chr11 9668402 9669090 -139114382 + L1PA11 LINE L1 5455 6172 -2 951 194 87 0 chr11 9669098 9669340 -139114132 + L1ME LINE L1 5310 5572 -594 546 181 0 0 chr11 9669351 9669434 -139114038 + AluS SINE Alu 1 83 -230 1906 92 0 0 chr11 9669600 9669849 -139113623 + AluY SINE Alu 59 307 -4 2283 76 0 33 chr11 9670384 9670688 -139112784 + AluSq SINE Alu 1 294 -19 180 419 73 0 chr11 9672555 9672679 -139110793 - MIR3 SINE MIR -24 184 52 229 388 54 0 chr11 9672810 9672939 -139110533 + L2 LINE L2 2917 3052 -220 880 187 113 127 chr11 9672963 9673342 -139110130 + MLT1A2 LTR MaLR 1 374 0 2140 124 3 0 chr11 9673358 9673656 -139109816 - AluSx SINE Alu -13 299 1 7108 53 11 0 chr11 9674018 9675137 -139108335 - L1PA6 LINE L1 -7 6147 5028 271 284 30 0 chr11 9676159 9676226 -139107246 + L2 LINE L2 3150 3218 -54 349 317 156 27 chr11 9676275 9676419 -139107053 - MIR SINE MIR -6 256 132 2195 139 3 0 chr11 9676419 9676729 -139106743 + AluSx SINE Alu 1 311 -1 349 317 156 27 chr11 9676729 9676808 -139106664 - MIR SINE MIR -130 132 4 406 279 79 19 chr11 9676875 9677090 -139106382 + Charlie8 DNA MER1_type 27 254 -2163 360 288 153 0 chr11 9677429 9677540 -139105932 + L3 LINE CR1 568 695 -882 1308 164 0 23 chr11 9678403 9678622 -139104850 + AluJo SINE Alu 87 300 -12 2174 92 41 3 chr11 9679143 9679437 -139104035 + AluSg SINE Alu 1 305 -5 1238 198 8 21 chr11 9679642 9679934 -139103538 - L1M1 LINE L1 -398 5785 5494 2444 62 10 0 chr11 9680006 9680298 -139103174 - AluSx SINE Alu -17 295 1 387 150 168 9 chr11 9680312 9680425 -139103047 - HsTC2 DNA Tc2 -49 1849 1 460 246 231 10 chr11 9681055 9681258 -139102214 + L2 LINE L2 3064 3311 -2 323 119 51 0 chr11 9681735 9681794 -139101678 - LTR50 LTR ERVL 0 795 734 2140 137 0 6 chr11 9681794 9682109 -139101363 - AluSq SINE Alu 0 313 1 1879 156 0 20 chr11 9682111 9682273 -139101199 - AluJb SINE Alu -17 295 140 2260 108 0 3 chr11 9682273 9682570 -139100902 - AluSc SINE Alu -12 297 2 1879 156 0 20 chr11 9682570 9682708 -139100764 - AluJb SINE Alu -172 140 1 857 163 0 7 chr11 9682709 9682844 -139100628 - AluJb SINE Alu -178 134 1 616 156 50 124 chr11 9682846 9683064 -139100408 - LTR41 LTR ERVL -54 719 518 610 265 6 11 chr11 9683289 9683470 -139100002 - LTR41 LTR ERVL -586 187 8 22 56 0 0 chr11 9683710 9683746 -139099726 + AT_rich Low_complexity Low_complexity 1 36 0 190 250 96 67 chr11 9683752 9683856 -139099616 - L2 LINE L2 -12 3301 3195 2231 100 3 0 chr11 9683951 9684242 -139099230 + AluSp SINE Alu 3 294 -19 21 0 0 0 chr11 9684242 9684263 -139099209 + AT_rich Low_complexity Low_complexity 1 21 0 1816 115 0 0 chr11 9684443 9684687 -139098785 + AluSx SINE Alu 55 298 -14 2345 90 0 7 chr11 9685657 9685956 -139097516 - AluSq SINE Alu -16 297 1 1251 170 54 81 chr11 9686443 9686570 -139096902 - L1MB7 LINE L1 -17 6167 6038 255 61 0 0 chr11 9686570 9686603 -139096869 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2153 141 0 3 chr11 9686603 9686916 -139096556 + AluSx SINE Alu 1 312 0 1251 170 54 81 chr11 9686916 9687122 -139096350 - L1MB7 LINE L1 -144 6040 5842 222 317 142 17 chr11 9687919 9688039 -139095433 - MIR SINE MIR -113 149 15 1635 186 7 29 chr11 9688285 9688592 -139094880 - AluJb SINE Alu -12 300 1 45 45 0 0 chr11 9689546 9689612 -139093860 + AT_rich Low_complexity Low_complexity 1 66 0 260 87 239 0 chr11 9690161 9690207 -139093265 + AluSc SINE Alu 232 288 -11 26 30 0 0 chr11 9691406 9691439 -139092033 + AT_rich Low_complexity Low_complexity 1 33 0 2311 123 0 0 chr11 9691532 9691840 -139091632 - AluSx SINE Alu -4 308 1 466 250 57 14 chr11 9692648 9692788 -139090684 + MER5B DNA MER1_type 4 149 -29 216 292 42 31 chr11 9693205 9693301 -139090171 - MIR SINE MIR 0 262 166 1989 131 3 7 chr11 9693947 9694237 -139089235 + AluSx SINE Alu 1 289 -23 205 167 0 0 chr11 9694602 9694638 -139088834 + A-rich Low_complexity Low_complexity 3 38 0 1680 191 7 33 chr11 9694770 9695074 -139088398 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr11 9695588 9695615 -139087857 + AT_rich Low_complexity Low_complexity 1 27 0 1803 181 148 19 chr11 9695782 9696267 -139087205 + LTR10A LTR ERV1 1 548 -61 1709 159 41 21 chr11 9696299 9696589 -139086883 - AluJo SINE Alu -16 296 1 304 326 91 21 chr11 9696616 9696803 -139086669 + L1MEd LINE L1 2 201 -5918 1234 151 139 4 chr11 9696922 9697173 -139086299 + MER49 LTR ERV1 1 285 -638 * 2904 152 96 46 chr11 9697157 9697203 -139086269 + MER4D LTR ERV1 50 92 -811 1673 158 18 14 chr11 9697203 9697488 -139085984 - AluJb SINE Alu -10 302 17 2904 152 96 46 chr11 9697488 9698151 -139085321 + MER4D LTR ERV1 92 893 -10 224 331 0 22 chr11 9698495 9698598 -139084874 + A-rich Low_complexity Low_complexity 1 102 -31 2437 70 0 3 chr11 9698598 9698900 -139084572 + AluY SINE Alu 1 301 -10 224 331 0 22 chr11 9698900 9698932 -139084540 + A-rich Low_complexity Low_complexity 102 133 0 1998 218 110 28 chr11 9698988 9699658 -139083814 - MER50 LTR ERV1 0 734 10 1344 245 24 63 chr11 9699683 9700301 -139083171 + L1MEd LINE L1 2137 2726 -3403 1633 201 10 7 chr11 9700301 9700604 -139082868 + AluJo SINE Alu 1 304 -8 1344 245 24 63 chr11 9700604 9700684 -139082788 + L1MEd LINE L1 2726 2808 -3321 312 231 15 0 chr11 9700684 9700749 -139082723 + MIR SINE MIR 197 262 0 353 93 0 37 chr11 9701010 9701064 -139082408 - L2 LINE L2 -1 3312 3261 900 293 8 16 chr11 9703318 9703567 -139079905 - MIR SINE MIR 0 262 16 2536 37 0 7 chr11 9703902 9704196 -139079276 + AluY SINE Alu 1 292 -19 186 43 0 0 chr11 9704244 9704267 -139079205 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1645 167 48 11 chr11 9704275 9704545 -139078927 - AluJb SINE Alu -32 280 1 2598 40 0 7 chr11 9704946 9705247 -139078225 + AluY SINE Alu 1 299 -12 411 328 162 18 chr11 9705452 9705681 -139077791 + L1ME LINE L1 4869 5130 -1016 6411 120 27 64 chr11 9705698 9706325 -139077147 + Tigger3b DNA MER2_type 2 651 -2377 2092 111 6 44 chr11 9706325 9706641 -139076831 + AluSc SINE Alu 1 304 -5 2114 96 0 61 chr11 9706644 9706957 -139076515 + AluSg1 SINE Alu 1 294 -15 6411 120 27 64 chr11 9706957 9707479 -139075993 + Tigger3b DNA MER2_type 653 1193 -1835 1172 107 45 102 chr11 9707479 9707594 -139075878 - MER30 DNA MER1_type 0 230 110 1958 93 12 0 chr11 9707594 9707842 -139075630 + AluSg SINE Alu 1 251 -59 1172 107 45 102 chr11 9707842 9707864 -139075608 - MER30 DNA MER1_type -120 110 88 2206 100 10 3 chr11 9707864 9708154 -139075318 + AluSg SINE Alu 1 292 -18 1172 107 45 102 chr11 9708154 9708259 -139075213 - MER30 DNA MER1_type -142 88 1 6411 120 27 64 chr11 9708259 9708367 -139075105 + Tigger3b DNA MER2_type 1193 1217 -14 1028 233 82 35 chr11 9708458 9708565 -139074907 + L1ME LINE L1 5258 5358 -804 1714 174 41 0 chr11 9708565 9708858 -139074614 + AluJb SINE Alu 2 306 -6 1028 233 82 35 chr11 9708858 9709203 -139074269 + L1ME LINE L1 5358 5624 -538 369 0 0 0 chr11 9709203 9709244 -139074228 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1028 233 82 35 chr11 9709244 9709274 -139074198 + L1ME LINE L1 5624 5651 -511 649 176 8 15 chr11 9709285 9709417 -139074055 + L1MCb LINE L1 579 923 -5373 717 148 0 25 chr11 9709442 9709564 -139073908 - FLAM_C SINE Alu -24 119 1 2214 124 8 3 chr11 9709564 9709927 -139073545 + L1MCb LINE L1 907 1271 -5293 1383 271 5 0 chr11 9709924 9710350 -139073122 + L1M4 LINE L1 4816 5246 -900 * 1315 166 0 4 chr11 9710350 9710579 -139072893 + L1MC1 LINE L1 6105 6332 -1 236 366 30 0 chr11 9710595 9710726 -139072746 - L2 LINE L2 -1190 2124 1990 2409 93 0 0 chr11 9710726 9711028 -139072444 + AluSc SINE Alu 1 302 -7 2216 128 0 3 chr11 9711340 9711645 -139071827 + AluSx SINE Alu 1 304 -8 1818 171 47 0 chr11 9712145 9712443 -139071029 - AluJo SINE Alu 0 312 1 26 30 0 0 chr11 9712780 9712813 -139070659 + AT_rich Low_complexity Low_complexity 1 33 0 2302 108 0 0 chr11 9712885 9713191 -139070281 - AluSx SINE Alu -6 306 1 333 260 125 82 chr11 9713327 9713535 -139069937 + L2 LINE L2 2237 2453 -861 531 259 89 57 chr11 9713798 9713907 -139069565 - HAL1 LINE L1 -2222 285 181 1852 152 3 59 chr11 9713907 9714230 -139069242 - AluJb SINE Alu -7 305 1 531 259 89 57 chr11 9714230 9714305 -139069167 - HAL1 LINE L1 -2326 181 110 2364 71 0 14 chr11 9714305 9714601 -139068871 - AluY SINE Alu -19 292 1 531 259 89 57 chr11 9714601 9714662 -139068810 - HAL1 LINE L1 -2397 110 31 504 139 0 0 chr11 9714812 9714898 -139068574 - AluSp SINE Alu 0 313 228 1906 170 68 32 chr11 9714898 9715339 -139068133 - LTR2B LTR ERV1 0 490 34 1669 112 4 9 chr11 9715361 9715593 -139067879 - AluSp SINE Alu -82 231 1 226 170 0 0 chr11 9715755 9715802 -139067670 + LTR66 LTR ERVL 394 440 -170 835 197 16 42 chr11 9716569 9716623 -139066849 + MER5A DNA MER1_type 2 56 -133 2287 101 3 0 chr11 9716623 9716931 -139066541 - AluSp SINE Alu -4 309 1 835 197 16 42 chr11 9716931 9717069 -139066403 + MER5A DNA MER1_type 56 189 0 1807 178 3 16 chr11 9717525 9717840 -139065632 + AluJo SINE Alu 1 311 -1 3879 140 18 2 chr11 9718258 9718859 -139064613 + LTR36 LTR ERV1 1 611 0 234 0 0 0 chr11 9718870 9718896 -139064576 + (CAA)n Simple_repeat Simple_repeat 2 27 0 832 192 31 104 chr11 9719669 9719690 -139063782 - MER33 DNA MER1_type -2261 324 303 2245 132 0 52 chr11 9719690 9719986 -139063486 + MER47A DNA MER2_type 1 311 -2012 2183 99 0 0 chr11 9719986 9720292 -139063180 - AluSx SINE Alu 0 306 1 1918 175 0 6 chr11 9720295 9720609 -139062863 - AluJb SINE Alu 0 312 1 2245 132 0 52 chr11 9720609 9720693 -139062779 + MER47A DNA MER2_type 313 366 0 832 192 31 104 chr11 9720693 9720861 -139062611 - MER33 DNA MER1_type -2282 303 165 1988 91 51 7 chr11 9720861 9721136 -139062336 - AluSp SINE Alu -26 287 1 832 192 31 104 chr11 9721136 9721263 -139062209 - MER33 DNA MER1_type -2420 165 30 569 254 47 22 chr11 9722012 9723015 -139060457 + L1ME1 LINE L1 2676 3786 -2360 430 235 130 9 chr11 9723015 9723130 -139060342 + FLAM_C SINE Alu 3 131 -2 569 254 47 22 chr11 9723130 9723392 -139060080 + L1ME1 LINE L1 3786 4040 -2106 1935 225 31 11 chr11 9723437 9724286 -139059186 + L1ME1 LINE L1 4906 5767 -399 7953 104 20 16 chr11 9724286 9725494 -139057978 + HSMAR1 DNA Mariner 11 1223 -64 1460 88 18 14 chr11 9725509 9725726 -139057746 + L1PA10 LINE L1 5950 6167 -1 537 79 0 0 chr11 9725742 9725818 -139057654 + HSMAR1 DNA Mariner 1212 1287 0 639 238 58 56 chr11 9725818 9726171 -139057301 + L1ME1 LINE L1 5781 6005 -161 34944 85 6 34 chr11 9726193 9729529 -139053943 + L1PA6 LINE L1 12 3196 -2958 744 112 26 0 chr11 9729529 9729645 -139053827 + AluY SINE Alu 168 286 -25 34944 85 6 34 chr11 9729645 9732452 -139051020 + L1PA6 LINE L1 3196 6082 -72 447 232 10 0 chr11 9732520 9732619 -139050853 - MSTD LTR MaLR -294 102 3 590 237 29 29 chr11 9732679 9732852 -139050620 + HAL1 LINE L1 1292 1464 -1043 300 311 73 24 chr11 9732872 9733464 -139050008 + L1ME LINE L1 3813 4433 -1713 2259 82 3 7 chr11 9733570 9733875 -139049597 + AluY SINE Alu 1 304 -7 386 348 40 6 chr11 9734369 9734547 -139048925 + L1ME LINE L1 4769 4952 -1194 2049 96 7 7 chr11 9734914 9735233 -139048239 - AluSg SINE Alu 0 319 1 360 259 24 0 chr11 9735328 9735413 -139048059 - L2 LINE L2 0 3313 3227 313 302 42 0 chr11 9735487 9735583 -139047889 + L1ME LINE L1 5494 5593 -528 1718 251 24 57 chr11 9735709 9735959 -139047513 + MER119 DNA MER1_type 6 263 -320 2448 51 0 7 chr11 9735959 9736251 -139047221 + AluY SINE Alu 1 290 -21 1718 251 24 57 chr11 9736251 9736597 -139046875 + MER119 DNA MER1_type 263 582 -1 426 261 96 56 chr11 9736795 9736870 -139046602 + L1ME3A LINE L1 3419 3490 -2656 1702 141 19 58 chr11 9736870 9737183 -139046289 + AluJo SINE Alu 1 301 -11 426 261 96 56 chr11 9737183 9737356 -139046116 + L1ME3A LINE L1 3490 3677 -2469 295 262 47 13 chr11 9737415 9737564 -139045908 + L1ME3A LINE L1 3904 4057 -2089 698 278 98 36 chr11 9737622 9737920 -139045552 + L1ME3A LINE L1 4154 4432 -1714 1557 167 71 0 chr11 9737920 9738189 -139045283 - AluJb SINE Alu -24 288 1 698 278 98 36 chr11 9738189 9738473 -139044999 + L1ME3A LINE L1 4432 4772 -1374 1244 143 0 43 chr11 9738474 9738859 -139044613 + AluJb SINE Alu 91 466 0 1330 285 49 18 chr11 9738878 9739998 -139043474 + L1ME3A LINE L1 4795 5954 -216 3869 170 31 13 chr11 9740397 9740661 -139042811 + L1PA16 LINE L1 4395 4653 -1513 1839 167 3 3 chr11 9740661 9740954 -139042518 + AluJo SINE Alu 2 294 -18 3869 170 31 13 chr11 9740954 9742152 -139041320 + L1PA16 LINE L1 4653 5874 -292 349 207 12 0 chr11 9742154 9742236 -139041236 + L1PA16 LINE L1 6082 6164 -2 2280 109 3 3 chr11 9742276 9742589 -139040883 - AluSp SINE Alu 0 313 1 269 302 55 76 chr11 9743049 9743340 -139040132 + ERVL LTR ERVL 306 590 -5174 503 265 168 5 chr11 9743340 9743525 -139039947 + MLT2F LTR ERVL 1 215 -448 4457 145 48 4 chr11 9743526 9744284 -139039188 + L1MB3 LINE L1 5386 6176 -7 1564 232 50 13 chr11 9744310 9744763 -139038709 - L1MC4 LINE L1 -1122 6920 6431 210 191 0 0 chr11 9744887 9744929 -139038543 + GA-rich Low_complexity Low_complexity 3 44 0 319 324 9 0 chr11 9744997 9745108 -139038364 - L1 LINE L1 -1780 4366 4255 620 316 129 2 chr11 9745204 9745600 -139037872 - L1 LINE L1 -2049 4097 3652 405 108 40 0 chr11 9745767 9745841 -139037631 + L1MA8 LINE L1 6211 6287 -4 485 321 38 11 chr11 9746010 9746194 -139037278 - L3 LINE CR1 -6 1571 1383 223 290 39 29 chr11 9746157 9746262 -139037210 + MER5A DNA MER1_type 19 130 -53 * 206 378 0 14 chr11 9746298 9746372 -139037100 - MER5B DNA MER1_type 0 178 106 218 224 0 0 chr11 9746710 9746759 -139036713 - L2 LINE L2 0 3313 3265 319 321 44 0 chr11 9746859 9746996 -139036476 - L2 LINE L2 -182 3090 2948 193 327 40 59 chr11 9747121 9747323 -139036149 - L2 LINE L2 -560 2754 2557 2148 272 80 25 chr11 9747763 9748077 -139035395 - HAL1 LINE L1 -1716 791 496 330 67 0 0 chr11 9748077 9748122 -139035350 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2148 272 80 25 chr11 9748122 9748556 -139034916 - HAL1 LINE L1 -2011 496 2 2968 79 48 33 chr11 9748656 9749003 -139034469 + L1PB1 LINE L1 5420 5777 -374 2257 106 20 0 chr11 9749003 9749304 -139034168 + AluSg1 SINE Alu 1 307 -2 2968 79 48 33 chr11 9749304 9749410 -139034062 + L1PB1 LINE L1 5777 5880 -271 27 0 0 0 chr11 9749747 9749774 -139033698 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr11 9750520 9750544 -139032928 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 386 256 76 40 chr11 9751104 9751381 -139032091 - L1ME4a LINE L1 -122 5999 5713 1035 282 72 52 chr11 9751875 9752389 -139031083 - L1ME3A LINE L1 -278 5892 5369 21 0 0 0 chr11 9752859 9752880 -139030592 + AT_rich Low_complexity Low_complexity 1 21 0 2224 118 0 0 chr11 9753294 9753598 -139029874 - AluY SINE Alu -7 304 1 2490 24 7 3 chr11 9754193 9754483 -139028989 - AluY SINE Alu -6 305 15 980 199 12 0 chr11 9755827 9755998 -139027474 - FAM SINE Alu -2 173 1 1086 252 84 61 chr11 9756027 9756516 -139026956 - L1ME3A LINE L1 -925 5221 4708 2192 105 0 0 chr11 9756516 9756802 -139026670 - AluSg SINE Alu -24 286 1 1086 252 84 61 chr11 9756802 9757047 -139026425 - L1ME3A LINE L1 -1438 4708 4470 2088 146 0 0 chr11 9759022 9759330 -139024142 + AluSx SINE Alu 1 308 -4 1666 161 11 0 chr11 9759808 9760087 -139023385 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr11 9760588 9760619 -139022853 + AT_rich Low_complexity Low_complexity 1 31 0 1539 139 0 8 chr11 9760712 9760957 -139022515 - L1PB4 LINE L1 -2 6154 5912 2217 83 48 0 chr11 9761137 9761427 -139022045 - AluSp SINE Alu -9 304 1 578 248 45 20 chr11 9761427 9761620 -139021852 - L1MD3 LINE L1 -7 7988 7788 2189 117 0 16 chr11 9761914 9762230 -139021242 - AluSx SINE Alu -1 311 1 365 245 91 7 chr11 9762310 9762453 -139021019 + L1M4 LINE L1 2448 2602 -3544 * 687 159 165 0 chr11 9762451 9762627 -139020845 + L1MB7 LINE L1 5199 5403 -743 3083 163 21 44 chr11 9762648 9762930 -139020542 + L1MB7 LINE L1 5544 5831 -353 2267 69 0 13 chr11 9762930 9763235 -139020237 + AluY SINE Alu 1 301 -10 3083 163 21 44 chr11 9763235 9763478 -139019994 + L1MB7 LINE L1 5831 6078 -106 2174 98 4 0 chr11 9763478 9763753 -139019719 + AluSp SINE Alu 2 277 -36 366 85 0 0 chr11 9763755 9763814 -139019658 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 233 29 29 0 chr11 9763815 9763849 -139019623 + (TA)n Simple_repeat Simple_repeat 1 35 0 3083 163 21 44 chr11 9763849 9763973 -139019499 + L1MB7 LINE L1 6078 6184 0 338 265 143 0 chr11 9764022 9764120 -139019352 + L1ME3A LINE L1 6006 6117 -53 2261 262 173 22 chr11 9764530 9765722 -139017750 + L2 LINE L2 1930 3287 -26 367 358 51 11 chr11 9765858 9766034 -139017438 - L3b LINE CR1 -70 1513 1331 2046 71 4 0 chr11 9766054 9766309 -139017163 - AluY SINE Alu -16 295 40 181 333 72 14 chr11 9766490 9766559 -139016913 + MIR SINE MIR 39 111 -97 281 374 81 17 chr11 9766736 9766910 -139016562 - L3 LINE CR1 -1292 285 101 21 36 0 0 chr11 9767016 9767044 -139016428 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 9767067 9767092 -139016380 + AT_rich Low_complexity Low_complexity 1 25 0 1808 183 3 10 chr11 9767238 9767550 -139015922 + AluJb SINE Alu 1 310 -2 515 291 58 28 chr11 9767562 9767889 -139015583 + L1M4 LINE L1 4589 4925 -1221 693 253 16 31 chr11 9767902 9768096 -139015376 + MIR SINE MIR 25 215 -47 183 42 0 0 chr11 9768096 9768120 -139015352 + (CA)n Simple_repeat Simple_repeat 2 25 0 2250 108 0 7 chr11 9768318 9768624 -139014848 - AluSg SINE Alu -6 304 1 29 0 0 0 chr11 9771332 9771361 -139012111 + AT_rich Low_complexity Low_complexity 1 29 0 1600 194 11 0 chr11 9771818 9772102 -139011370 - AluJo SINE Alu -25 287 1 465 118 24 0 chr11 9772136 9772221 -139011251 + L1MB4 LINE L1 6094 6180 0 274 319 0 0 chr11 9772359 9772431 -139011041 + L2 LINE L2 2552 2623 -691 1113 298 32 34 chr11 9772431 9772898 -139010574 + L2 LINE L2 2848 3313 0 23 0 0 0 chr11 9773539 9773562 -139009910 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 9773726 9773753 -139009719 + (CA)n Simple_repeat Simple_repeat 2 28 0 1804 78 0 41 chr11 9775091 9775336 -139008136 - AluY SINE Alu -76 235 1 6746 69 6 2 chr11 9775336 9776487 -139006985 + L1PA6 LINE L1 5001 6154 0 458 279 46 9 chr11 9776627 9776794 -139006678 - MIR3 SINE MIR -28 180 3 227 176 28 190 chr11 9778303 9778445 -139005027 + MIR SINE MIR 114 232 -30 29 60 0 0 chr11 9778915 9778965 -139004507 + AT_rich Low_complexity Low_complexity 1 50 0 2268 261 69 65 chr11 9779729 9780998 -139002474 + L1MC4 LINE L1 6768 8042 0 1890 225 33 18 chr11 9783478 9783641 -138999831 + L1M4 LINE L1 2710 2869 -3277 1706 197 7 3 chr11 9783641 9783936 -138999536 - AluJo SINE Alu -16 296 1 1890 225 33 18 chr11 9783936 9784372 -138999100 + L1M4 LINE L1 2869 3318 -2828 1588 81 88 59 chr11 9784372 9784644 -138998828 - LTR66 LTR ERVL 0 610 331 253 0 0 57 chr11 9784645 9784673 -138998799 - LTR66 LTR ERVL -210 400 375 244 253 123 12 chr11 9784673 9784816 -138998656 + LTR10B LTR ERV1 1 250 -297 607 189 30 30 chr11 9784886 9785018 -138998454 + LTR10B LTR ERV1 416 547 0 2834 86 0 18 chr11 9785018 9785229 -138998243 - LTR66 LTR ERVL -234 376 174 2200 107 7 0 chr11 9785229 9785529 -138997943 - AluSx SINE Alu -10 302 1 2834 86 0 18 chr11 9785529 9785700 -138997772 - LTR66 LTR ERVL -436 174 1 5095 240 34 20 chr11 9785704 9785959 -138997513 + L1M4 LINE L1 3315 3565 -2581 1431 194 81 6 chr11 9785959 9786279 -138997193 - MER2 DNA MER2_type 0 344 1 5095 240 34 20 chr11 9786279 9787547 -138995925 + L1M4 LINE L1 3565 4859 -1287 234 258 15 15 chr11 9787551 9787617 -138995855 + MIR SINE MIR 196 261 -1 603 258 0 8 chr11 9788145 9788277 -138995195 + MER8 DNA MER2_type 6 136 -103 278 222 16 0 chr11 9788378 9788441 -138995031 + Charlie1 DNA MER1_type 58 121 -2640 * 807 211 26 0 chr11 9788438 9788594 -138994878 + Charlie1 DNA MER1_type 1460 1619 -1142 3379 181 88 25 chr11 9788610 9789387 -138994085 + Charlie1 DNA MER1_type 1809 2652 -109 1981 145 3 3 chr11 9789387 9789683 -138993789 + AluSq SINE Alu 1 296 -17 3379 181 88 25 chr11 9789683 9789800 -138993672 + Charlie1 DNA MER1_type 2652 2760 -1 1890 128 38 85 chr11 9790390 9790788 -138992684 - Tigger7 DNA MER2_type -4 2583 2205 1414 171 75 4 chr11 9790774 9791026 -138992446 - Tigger7 DNA MER2_type -461 272 3 * 302 283 133 18 chr11 9792809 9792922 -138990550 - MIR SINE MIR -63 145 20 207 100 0 0 chr11 9793066 9793096 -138990376 + (TATG)n Simple_repeat Simple_repeat 4 33 0 570 243 79 26 chr11 9793105 9793372 -138990100 - L1ME4a LINE L1 -196 5925 5645 1327 169 3 112 chr11 9793673 9794004 -138989468 + AluJb SINE Alu 1 295 -7 5048 132 24 40 chr11 9794565 9794965 -138988507 + L1PB3 LINE L1 5083 5488 -666 2021 130 33 0 chr11 9794965 9795265 -138988207 - AluSx SINE Alu 0 312 3 5048 132 24 40 chr11 9795265 9795590 -138987882 + L1PB3 LINE L1 5488 5817 -337 432 0 0 0 chr11 9795590 9795638 -138987834 + (CA)n Simple_repeat Simple_repeat 2 49 0 5048 132 24 40 chr11 9795638 9796005 -138987467 + L1PB3 LINE L1 5817 6154 0 2670 201 0 0 chr11 9796171 9796699 -138986773 - L1P LINE L1 -1358 4788 4261 * 10785 119 19 6 chr11 9796697 9798247 -138985225 + L1PA12 LINE L1 1013 2582 -4999 1728 222 98 18 chr11 9798370 9798888 -138984584 + L1ME1 LINE L1 5608 6324 -10 2083 133 3 3 chr11 9799301 9799609 -138983863 - AluSg SINE Alu -2 308 1 1036 175 0 0 chr11 9799692 9799863 -138983609 + FAM SINE Alu 5 175 0 409 100 0 43 chr11 9800005 9800075 -138983397 - AluYb8 SINE Alu -1 307 241 236 202 12 95 chr11 9800023 9800107 -138983365 + AluJo/FRAM SINE Alu 183 259 -43 * 1535 123 54 0 chr11 9800833 9801094 -138982378 + L1MA8 LINE L1 6013 6287 -4 1564 192 3 27 chr11 9801312 9801609 -138981863 - AluJo SINE Alu -22 290 1 256 268 18 0 chr11 9801894 9801950 -138981522 + MER20B DNA MER1_type 84 140 -643 1989 138 0 3 chr11 9802159 9802463 -138981009 + AluSx SINE Alu 3 305 -7 389 353 40 20 chr11 9802834 9803086 -138980386 + L1MEd LINE L1 594 850 -5269 549 309 57 45 chr11 9803108 9803501 -138979971 + L1M3d LINE L1 1 1552 -5475 1344 217 77 68 chr11 9803629 9804173 -138979299 + L1ME2 LINE L1 5500 6102 -62 2575 191 18 0 chr11 9804182 9804678 -138978794 + L1MB7 LINE L1 5652 6156 -28 861 222 199 73 chr11 9804690 9805308 -138978164 + L1MC5 LINE L1 6837 7532 -429 297 211 119 108 chr11 9805416 9805601 -138977871 + L1ME3A LINE L1 5977 6163 -7 252 252 0 87 chr11 9805678 9805781 -138977691 - MLT1J LTR MaLR -58 453 360 232 263 100 25 chr11 9805849 9805929 -138977543 + L2 LINE L2 3186 3271 -1 21 0 0 0 chr11 9806028 9806049 -138977423 + AT_rich Low_complexity Low_complexity 1 21 0 4277 152 10 15 chr11 9807363 9808078 -138975394 - MER50 LTR ERV1 -23 711 1 416 198 0 85 chr11 9808423 9808529 -138974943 + MER34B LTR ERV1 467 583 -2 344 347 41 0 chr11 9808878 9808999 -138974473 - L2 LINE L2 -9 3263 3138 23 0 0 0 chr11 9809232 9809255 -138974217 + AT_rich Low_complexity Low_complexity 1 23 0 223 389 14 0 chr11 9809712 9809784 -138973688 + L2 LINE L2 3101 3173 -99 310 216 227 0 chr11 9810530 9810618 -138972854 + L2 LINE L2 3204 3311 -2 2341 71 0 0 chr11 9811273 9811580 -138971892 + AluY SINE Alu 2 308 0 1763 106 102 0 chr11 9811981 9812246 -138971226 + AluSx SINE Alu 1 292 -20 578 146 50 19 chr11 9812567 9812730 -138970742 + MLT1D LTR MaLR 236 505 0 289 262 61 55 chr11 9812752 9812893 -138970579 - L1MD3 LINE L1 -11 7984 7839 1840 145 0 28 chr11 9812893 9813210 -138970262 - AluJb SINE Alu 0 309 1 289 262 61 55 chr11 9813210 9813231 -138970241 - L1MD3 LINE L1 -156 7839 7820 2052 249 90 84 chr11 9813231 9814151 -138969321 + L1MC4 LINE L1 6084 7093 -808 189 0 0 0 chr11 9814151 9814172 -138969300 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2052 249 90 84 chr11 9814172 9814482 -138968990 + L1MC4 LINE L1 7093 7400 -501 406 301 65 56 chr11 9814458 9814764 -138968708 + L1M4 LINE L1 22 624 -6231 * 1552 277 65 52 chr11 9814960 9815616 -138967856 + L1M4 LINE L1 1004 1650 -5309 1724 176 13 10 chr11 9815616 9815918 -138967554 + AluJo SINE Alu 1 303 -9 1552 277 65 52 chr11 9815918 9816539 -138966933 + L1M4 LINE L1 1650 2312 -4647 1741 182 30 3 chr11 9816539 9816841 -138966631 + AluJb SINE Alu 1 310 -2 1552 277 65 52 chr11 9816841 9816932 -138966540 + L1M4 LINE L1 2312 2400 -4559 7168 95 20 2 chr11 9816989 9818795 -138964677 + L1PA7 LINE L1 4319 6149 -5 13103 158 31 17 chr11 9818991 9822347 -138961125 - MER50-int LTR ERV1 -1323 3894 1 4374 148 14 15 chr11 9822383 9823106 -138960366 - MER50 LTR ERV1 -12 722 1 1969 117 139 115 chr11 9823107 9823603 -138959869 - MER4A LTR ERV1 -156 508 1 220 416 0 0 chr11 9823870 9823971 -138959501 - L2 LINE L2 -619 2695 2595 1935 112 11 0 chr11 9824392 9824669 -138958803 + AluY SINE Alu 1 280 -31 284 221 0 0 chr11 9824744 9824821 -138958651 + L1M4 LINE L1 2982 3058 -4080 383 175 24 22 chr11 9824831 9824922 -138958550 + Tigger5 DNA MER2_type 4 2323 0 297 221 53 0 chr11 9824945 9825040 -138958432 + L1M4 LINE L1 3073 3172 -3785 506 214 87 53 chr11 9825776 9825982 -138957490 + L1MC5 LINE L1 7638 7850 -111 22 0 0 30 chr11 9826214 9826231 -138957241 + AT_rich Low_complexity Low_complexity 1 18 -14 2283 81 0 7 chr11 9826231 9826528 -138956944 + AluY SINE Alu 1 295 -16 22 0 0 30 chr11 9826528 9826543 -138956929 + AT_rich Low_complexity Low_complexity 18 32 0 23 0 0 0 chr11 9827343 9827366 -138956106 + AT_rich Low_complexity Low_complexity 1 23 0 1058 320 139 25 chr11 9827522 9828132 -138955340 + L3 LINE CR1 895 1574 -3 21 36 0 0 chr11 9828209 9828237 -138955235 + AT_rich Low_complexity Low_complexity 1 28 0 2103 112 7 3 chr11 9828436 9828721 -138954751 + AluSx SINE Alu 1 286 -26 480 18 0 0 chr11 9828721 9828778 -138954694 + (CATA)n Simple_repeat Simple_repeat 2 58 0 386 292 93 62 chr11 9829164 9829517 -138953955 - MLT1J LTR MaLR -43 468 105 2544 44 0 0 chr11 9830268 9830561 -138952911 - AluY SINE Alu -18 293 1 216 328 109 17 chr11 9831047 9831166 -138952306 + MIR3 SINE MIR 9 138 -70 27 29 0 0 chr11 9831256 9831290 -138952182 + AT_rich Low_complexity Low_complexity 1 34 0 2398 75 0 3 chr11 9831369 9831676 -138951796 + AluSg SINE Alu 1 306 -4 415 217 0 0 chr11 9831691 9831783 -138951689 - MER113 DNA MER1_type? -415 106 15 2150 109 3 31 chr11 9832101 9832421 -138951051 + AluSq SINE Alu 3 313 0 2199 115 0 13 chr11 9832999 9833304 -138950168 - AluSx SINE Alu -11 301 1 2669 33 0 3 chr11 9833561 9833866 -138949606 - AluY SINE Alu -7 304 1 229 313 52 10 chr11 9834676 9834772 -138948700 + MIR3 SINE MIR 103 202 -6 670 130 0 0 chr11 9835887 9835987 -138947485 + L1PB3 LINE L1 6041 6140 -14 25 83 0 0 chr11 9835990 9836050 -138947422 + AT_rich Low_complexity Low_complexity 1 60 0 247 283 0 0 chr11 9836947 9837007 -138946465 + MIR3 SINE MIR 146 205 -3 584 248 50 0 chr11 9837969 9838110 -138945362 - MIR3 SINE MIR -23 185 38 14257 197 58 10 chr11 9838605 9842437 -138941035 - L1PB1 LINE L1 0 6867 2602 2058 133 0 10 chr11 9842437 9842755 -138940717 + AluSx SINE Alu 1 312 0 14257 197 58 10 chr11 9842755 9845485 -138937987 - L1PB1 LINE L1 -4265 2602 6 1149 163 32 0 chr11 9846596 9846817 -138936655 - L1PA16 LINE L1 -9 6157 5930 2070 76 73 0 chr11 9847195 9847470 -138936002 + AluY SINE Alu 2 296 -15 1697 139 12 111 chr11 9847624 9847780 -138935692 + AluJo SINE Alu 1 108 -204 2303 102 7 0 chr11 9847780 9848074 -138935398 + AluSx SINE Alu 1 296 -16 1697 139 12 111 chr11 9848074 9848249 -138935223 + AluJo SINE Alu 108 299 -13 22 0 0 0 chr11 9848654 9848676 -138934796 + AT_rich Low_complexity Low_complexity 1 22 0 375 198 57 47 chr11 9848773 9848879 -138934593 - MIR SINE MIR -20 242 136 1771 117 0 12 chr11 9849045 9849302 -138934170 - AluJb SINE Alu -14 298 45 594 174 8 25 chr11 9849303 9849424 -138934048 + AluJb SINE Alu 189 307 -5 201 222 32 63 chr11 9849595 9849658 -138933814 - L2 LINE L2 -1 3312 3252 1914 162 0 19 chr11 9850549 9850858 -138932614 - AluJo SINE Alu -9 303 1 8609 108 35 3 chr11 9951208 9952726 -138830746 + MER57-int LTR ERV1 5546 7148 -389 600 123 44 0 chr11 9952726 9952840 -138830632 + LTR54B LTR ERV1 3 121 -377 198 0 0 0 chr11 9953593 9953615 -138829857 + (TA)n Simple_repeat Simple_repeat 2 23 0 341 335 74 7 chr11 9953701 9954076 -138829396 + LTR16B LTR ERVL 18 455 -8 195 235 0 0 chr11 9954764 9954798 -138828674 + L2 LINE L2 3008 3041 -272 985 105 42 0 chr11 9955298 9955441 -138828031 + AluSp SINE Alu 1 149 -164 6956 157 49 34 chr11 9955544 9956250 -138827222 - MER51-int LTR ERV1 -2478 5338 4644 2324 85 0 3 chr11 9956250 9956555 -138826917 - AluY SINE Alu -7 304 1 6956 157 49 34 chr11 9956555 9957421 -138826051 - MER51-int LTR ERV1 -3172 4644 2410 1266 150 19 0 chr11 9957421 9957634 -138825838 - L1M1 LINE L1 -7333 232 16 2068 115 0 50 chr11 9957648 9957971 -138825501 - AluSx SINE Alu -5 307 1 593 246 85 71 chr11 9957998 9958282 -138825190 - L1M4 LINE L1 -2283 3863 3570 1462 193 27 48 chr11 9958282 9958577 -138824895 - AluJo SINE Alu -23 289 1 593 246 85 71 chr11 9958577 9958715 -138824757 - L1M4 LINE L1 -2576 3570 3435 2226 117 7 0 chr11 9958789 9959098 -138824374 + AluSq SINE Alu 3 313 0 3560 227 26 62 chr11 9959100 9960003 -138823469 - L1MA10 LINE L1 -44 6992 6058 724 236 6 13 chr11 9960003 9960160 -138823312 - FAM SINE Alu -19 156 1 3560 227 26 62 chr11 9960160 9960269 -138823203 - L1MA10 LINE L1 -978 6058 6031 1815 168 7 0 chr11 9960269 9960567 -138822905 - AluJb SINE Alu -12 300 1 3560 227 26 62 chr11 9960567 9960752 -138822720 - L1MA10 LINE L1 -1005 6031 5841 2350 196 35 2 chr11 9960748 9961268 -138822204 + L1 LINE L1 4595 5131 -1015 * 5136 238 60 10 chr11 9961268 9963238 -138820234 - L1MA10 LINE L1 -2289 4559 2493 303 321 63 79 chr11 9963283 9963473 -138819999 - L1MA10 LINE L1 -5454 1395 1209 606 249 143 19 chr11 9963684 9964052 -138819420 - L1M4 LINE L1 -2689 3457 3030 2037 128 7 10 chr11 9964052 9964349 -138819123 - AluSx SINE Alu -16 296 1 606 249 143 19 chr11 9964349 9964398 -138819074 - L1M4 LINE L1 -3116 3030 2988 599 220 0 0 chr11 9964498 9964618 -138818854 + AluJb SINE Alu 182 301 0 1360 216 7 38 chr11 9964698 9964989 -138818483 + AluJo SINE Alu 1 282 -30 2240 87 0 20 chr11 9964989 9965289 -138818183 - AluSc SINE Alu -13 296 3 1855 151 0 0 chr11 9965628 9965906 -138817566 + AluSx SINE Alu 35 312 0 513 230 8 50 chr11 9966129 9966394 -138817078 - L1MA10 LINE L1 -5 6297 5916 575 250 0 0 chr11 9966423 9966555 -138816917 - L1ME LINE L1 -370 5796 5665 296 134 41 103 chr11 9966621 9966655 -138816817 + L1M4 LINE L1 2271 2306 -3840 1790 184 0 7 chr11 9966655 9966960 -138816512 + AluJb SINE Alu 1 303 -9 296 134 41 103 chr11 9966960 9967022 -138816450 + L1M4 LINE L1 2306 2361 -3785 227 263 59 48 chr11 9967023 9967160 -138816312 + L1M4 LINE L1 2390 2531 -3615 2198 138 0 0 chr11 9967160 9967472 -138816000 + AluSx SINE Alu 1 312 0 227 263 59 48 chr11 9967472 9967520 -138815952 + L1M4 LINE L1 2531 2577 -3569 332 248 8 0 chr11 9967568 9967685 -138815787 + (TATATG)n Simple_repeat Simple_repeat 3 120 0 714 276 27 0 chr11 9967697 9967998 -138815474 + L1M4 LINE L1 2670 2978 -3168 909 35 0 0 chr11 9969447 9969560 -138813912 - L1P LINE L1 -6033 113 1 11434 156 33 19 chr11 9969565 9969739 -138813733 + L1MA3 LINE L1 2746 2916 -3389 2105 130 0 3 chr11 9969739 9970040 -138813432 + AluSx SINE Alu 1 300 -12 11434 156 33 19 chr11 9970040 9970054 -138813418 + L1MA3 LINE L1 2916 2928 -3377 2244 89 3 3 chr11 9970054 9970347 -138813125 + AluSx SINE Alu 1 293 -19 11434 156 33 19 chr11 9970347 9973662 -138809810 + L1MA3 LINE L1 2928 6305 0 597 260 40 35 chr11 9974448 9974648 -138808824 - L2 LINE L2 -4 3309 3109 2218 122 0 0 chr11 9974673 9974976 -138808496 - AluSx SINE Alu -9 303 1 231 36 0 0 chr11 9975115 9975143 -138808329 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1095 199 5 23 chr11 9975145 9975361 -138808111 - AluJb SINE Alu -31 281 70 252 0 0 0 chr11 9975724 9975752 -138807720 + (TG)n Simple_repeat Simple_repeat 1 28 0 1917 154 4 0 chr11 9975753 9976033 -138807439 - AluSx SINE Alu -31 281 1 214 358 0 81 chr11 9976413 9976536 -138806936 - L3 LINE CR1 -7 1570 1458 383 297 18 27 chr11 9976555 9976666 -138806806 - L2 LINE L2 -4 3268 3159 324 319 183 0 chr11 9978356 9978547 -138804925 + L3 LINE CR1 766 991 -586 504 273 36 7 chr11 9978788 9978927 -138804545 + MIR SINE MIR 7 149 -113 1925 256 109 24 chr11 9979250 9980140 -138803332 + L1M4 LINE L1 2654 3467 -2679 252 0 0 0 chr11 9980140 9980168 -138803304 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2097 91 29 4 chr11 9980171 9980446 -138803026 - AluSx SINE Alu -30 282 1 1925 256 109 24 chr11 9980446 9980518 -138802954 + L1M4 LINE L1 3468 3702 -2444 2695 234 36 9 chr11 9980524 9981319 -138802153 + L1M4 LINE L1 3904 4720 -1426 590 269 145 28 chr11 9981371 9981620 -138801852 - MER21B LTR ERV1 -57 806 529 655 244 134 38 chr11 9981660 9981870 -138801602 - MER21B LTR ERV1 -553 310 122 2199 127 30 43 chr11 9981870 9982239 -138801233 + THE1B LTR MaLR 1 364 0 11691 94 4 1 chr11 9982240 9983814 -138799658 + THE1B-int LTR MaLR 2 1580 0 2378 116 30 25 chr11 9983814 9984176 -138799296 + THE1B LTR MaLR 1 364 0 655 244 134 38 chr11 9984176 9984200 -138799272 - MER21B LTR ERV1 -740 123 50 306 276 13 0 chr11 9984204 9984280 -138799192 - MER21B LTR ERV1 -768 95 19 4330 118 15 126 chr11 9984301 9985852 -138797620 + pTR5 LTR ERV1 743 2606 0 360 240 13 0 chr11 9985857 9985932 -138797540 - MER21B LTR ERV1 -773 90 15 956 221 49 49 chr11 9985955 9986304 -138797168 + L1M4 LINE L1 4796 5144 -1002 257 360 54 27 chr11 9986797 9986944 -138796528 - MIR3 SINE MIR -57 151 1 6606 104 77 14 chr11 9987293 9988431 -138795041 + L1M1 LINE L1 2337 3546 -4019 1303 213 39 3 chr11 9988434 9988716 -138794756 + L1M1 LINE L1 3870 4161 -3404 300 62 31 31 chr11 9988725 9988790 -138794682 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 41814 35 21 2 chr11 9988793 9994722 -138788750 - L1PA3 LINE L1 -4 6151 103 270 174 0 0 chr11 9994822 9994868 -138788604 + Alu SINE Alu 250 295 -7 791 230 97 18 chr11 9994880 9995106 -138788366 - L1ME LINE L1 -640 5526 5283 1848 140 9 43 chr11 9995142 9995154 -138788318 - AluJo SINE Alu 0 312 301 204 40 0 0 chr11 9995154 9995179 -138788293 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1848 140 9 43 chr11 9995179 9995355 -138788117 - AluJo SINE Alu -11 301 137 2341 59 45 0 chr11 9995355 9995641 -138787831 - AluY SINE Alu -12 299 1 1848 140 9 43 chr11 9995641 9995773 -138787699 - AluJo SINE Alu -175 137 2 23 0 0 0 chr11 9995930 9995953 -138787519 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 9996254 9996299 -138787173 + AT_rich Low_complexity Low_complexity 1 45 0 508 261 151 23 chr11 9996663 9996881 -138786591 - MIR SINE MIR 0 262 17 1613 191 7 17 chr11 9997667 9997966 -138785506 + AluJo SINE Alu 1 296 -16 231 36 0 0 chr11 9997966 9997994 -138785478 + (TG)n Simple_repeat Simple_repeat 2 29 0 294 279 38 0 chr11 9998001 9998080 -138785392 - MER103 DNA DNA -47 119 38 1324 154 154 8 chr11 9998084 9998351 -138785121 - AluSg1 SINE Alu -3 306 1 1498 188 32 29 chr11 9998375 9998684 -138784788 - AluJb SINE Alu -2 310 1 491 295 26 3 chr11 9998858 9999058 -138784414 + MIR SINE MIR 1 260 -2 226 309 93 21 chr11 10000209 10000306 -138783166 + MIR SINE MIR 36 139 -69 4830 153 32 13 chr11 10000689 10001127 -138782345 - L1MA8 LINE L1 0 6291 5863 2005 130 27 10 chr11 10001127 10001426 -138782046 - AluSx SINE Alu -4 308 5 4830 153 32 13 chr11 10001426 10001652 -138781820 - L1MA8 LINE L1 -428 5863 5643 1828 131 44 34 chr11 10001652 10001950 -138781522 - AluJb SINE Alu -8 304 4 4830 153 32 13 chr11 10001950 10002190 -138781282 - L1MA8 LINE L1 -648 5643 5369 230 206 26 153 chr11 10002759 10002948 -138780524 - HAL1 LINE L1 0 2507 2343 2761 117 7 32 chr11 10002994 10003206 -138780266 - MER57B LTR ERV1 -10 424 227 2495 60 0 22 chr11 10003206 10003523 -138779949 - AluY SINE Alu -1 310 1 2761 117 7 32 chr11 10003523 10003745 -138779727 - MER57B LTR ERV1 -207 227 1 588 90 0 22 chr11 10003869 10003958 -138779514 + AluJb SINE Alu 213 299 -13 2664 223 132 18 chr11 10003962 10004771 -138778701 + L1HS LINE L1 5465 7992 -3 2261 99 0 0 chr11 10004810 10005103 -138778369 - AluY SINE Alu -17 294 2 1283 194 55 22 chr11 10005146 10005324 -138778148 - AluJo SINE Alu -6 306 114 189 0 0 0 chr11 10005324 10005345 -138778127 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1283 194 55 22 chr11 10005345 10005439 -138778033 - AluJo SINE Alu -198 114 25 857 231 9 0 chr11 10005447 10005663 -138777809 + Charlie2a DNA MER1_type 1755 1972 -890 2240 103 13 0 chr11 10005782 10006083 -138777389 + AluSx SINE Alu 1 305 -7 257 308 28 75 chr11 10006881 10006988 -138776484 - L2 LINE L2 -49 3223 3122 427 227 177 14 chr11 10007142 10007283 -138776189 - MIR SINE MIR -8 254 91 216 216 52 113 chr11 10007409 10007506 -138775966 - L2 LINE L2 -46 3267 3177 2741 198 12 14 chr11 10007960 10008551 -138774921 - L1MB3 LINE L1 0 6183 5594 22 35 0 0 chr11 10008554 10008583 -138774889 + AT_rich Low_complexity Low_complexity 1 29 0 346 301 135 31 chr11 10008798 10009124 -138774348 + L1MC/D LINE L1 3127 3486 -2660 2384 182 44 14 chr11 10009136 10009637 -138773835 + L1MD3 LINE L1 7455 7970 -25 361 343 83 6 chr11 10009861 10010030 -138773442 + L1MC/D LINE L1 3718 3899 -2247 2442 72 0 10 chr11 10010057 10010364 -138773108 - AluSq SINE Alu -9 304 1 21 36 0 0 chr11 10010398 10010426 -138773046 + AT_rich Low_complexity Low_complexity 1 28 0 1022 194 24 65 chr11 10010533 10010873 -138772599 - LTR37B LTR ERV1 -11 457 132 330 284 140 53 chr11 10010976 10011240 -138772232 + L1MC/D LINE L1 5273 5559 -2249 366 221 10 0 chr11 10011527 10011611 -138771861 - MER31B LTR ERV1 -89 377 293 26 50 0 0 chr11 10011642 10011682 -138771790 + AT_rich Low_complexity Low_complexity 1 40 0 505 223 0 0 chr11 10012095 10012198 -138771274 + MER3 DNA MER1_type 1 103 -106 489 175 10 52 chr11 10012788 10012885 -138770587 + MER21B LTR ERV1 1 93 -770 2843 248 63 11 chr11 10012904 10013649 -138769823 + MER21B LTR ERV1 19 802 -61 1929 98 4 4 chr11 10015929 10016185 -138767287 - AluSp SINE Alu -18 295 40 418 230 30 30 chr11 10016325 10016460 -138767012 + L1M4 LINE L1 4500 4634 -1512 2409 69 0 7 chr11 10016465 10016771 -138766701 - AluY SINE Alu -7 304 1 1771 170 3 3 chr11 10016958 10017263 -138766209 + AluJb SINE Alu 1 305 0 1794 277 69 5 chr11 10017727 10018280 -138765192 - MLT1G LTR MaLR -2 588 1 6201 147 15 5 chr11 10018527 10020399 -138763073 + L1PA13 LINE L1 4191 6072 -91 985 142 0 35 chr11 10020514 10020683 -138762789 + FRAM SINE Alu 14 176 0 43787 39 6 1 chr11 10020773 10026896 -138756576 + L1PA4 LINE L1 2 6152 -3 231 275 11 22 chr11 10027226 10027317 -138756155 - L1ME LINE L1 -455 5735 5646 818 312 152 21 chr11 10028260 10028938 -138754534 - L2 LINE L2 -5 3308 2535 320 229 0 0 chr11 10028938 10028999 -138754473 + Tigger2 DNA MER2_type 2 62 -2656 283 321 38 31 chr11 10029129 10029288 -138754184 + MIR SINE MIR 97 256 -6 276 208 119 40 chr11 10029579 10029680 -138753792 - MLT1J2 LTR MaLR -305 145 37 669 292 165 23 chr11 10030940 10031334 -138752138 - MLT1J2 LTR MaLR 0 450 1 28 0 0 0 chr11 10031727 10031755 -138751717 + AT_rich Low_complexity Low_complexity 1 28 0 2407 87 3 0 chr11 10033498 10033810 -138749662 + AluSp SINE Alu 1 313 0 1294 258 65 4 chr11 10034501 10034990 -138748482 + L1M4 LINE L1 2714 3232 -2914 1177 219 43 41 chr11 10035017 10035409 -138748063 - L1ME LINE L1 -1109 5106 4714 279 277 57 14 chr11 10035412 10035553 -138747919 - L1ME LINE L1 -1787 4428 4282 260 287 47 15 chr11 10035555 10035756 -138747716 - L1ME LINE L1 -5040 1165 956 386 329 36 15 chr11 10035798 10035935 -138747537 - L1ME LINE L1 -5474 922 783 2179 175 103 119 chr11 10037105 10037868 -138745604 + MER52A LTR ERV1 1 853 -688 5060 173 7 1 chr11 10037868 10038819 -138744653 + L1P LINE L1 4359 5315 -831 1754 98 0 4 chr11 10038823 10039058 -138744414 + Charlie3 DNA MER1_type 2469 2702 -8 4208 205 166 15 chr11 10039058 10040329 -138743143 + L1 LINE L1 2621 4166 -1980 5120 75 20 20 chr11 10040329 10040852 -138742620 + LTR8 LTR ERV1 1 526 -165 2197 82 43 0 chr11 10040852 10041132 -138742340 + AluY SINE Alu 1 292 -19 5120 75 20 20 chr11 10041132 10041299 -138742173 + LTR8 LTR ERV1 525 691 0 4208 205 166 15 chr11 10041299 10041450 -138742022 + L1 LINE L1 4166 4293 -1853 288 250 0 0 chr11 10041672 10041732 -138741740 + GA-rich Low_complexity Low_complexity 3 62 0 436 174 46 28 chr11 10041741 10041850 -138741622 + L1ME4a LINE L1 5962 6072 -49 281 331 45 6 chr11 10041970 10042127 -138741345 + L2 LINE L2 2886 3048 -224 2139 117 7 0 chr11 10042149 10042439 -138741033 + AluSx SINE Alu 14 305 -7 369 282 33 98 chr11 10042736 10042934 -138740538 + MLT1J LTR MaLR 1 221 -289 1258 179 68 64 chr11 10042939 10043235 -138740237 + AluJo SINE Alu 5 301 -11 228 313 17 108 chr11 10043343 10043519 -138739953 + MLT1J LTR MaLR 342 501 -10 21 0 0 0 chr11 10043817 10043838 -138739634 + AT_rich Low_complexity Low_complexity 1 21 0 306 224 0 0 chr11 10044749 10044807 -138738665 - MIR SINE MIR -24 238 181 2402 90 0 3 chr11 10045027 10045328 -138738144 - AluSq SINE Alu -13 300 1 742 176 55 48 chr11 10045332 10045497 -138737975 - FRAM SINE Alu 0 166 1 2295 94 0 13 chr11 10045649 10045958 -138737514 - AluSq SINE Alu -8 305 1 1268 250 89 39 chr11 10046482 10046922 -138736550 - MLT1C LTR MaLR -5 462 1 622 137 21 0 chr11 10047189 10047311 -138736161 - FLAM_C SINE Alu 0 144 21 499 70 0 0 chr11 10047312 10047383 -138736089 - Alu SINE Alu -8 304 234 749 168 0 0 chr11 10047392 10047517 -138735955 - FLAM_C SINE Alu -18 125 1 24 0 0 0 chr11 10048828 10048852 -138734620 + AT_rich Low_complexity Low_complexity 1 24 0 2326 91 0 0 chr11 10049691 10049987 -138733485 - AluSx SINE Alu -5 307 12 303 28 0 0 chr11 10051352 10051388 -138732084 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2123 107 4 0 chr11 10051393 10051673 -138731799 - AluSx SINE Alu -30 282 2 1429 174 97 0 chr11 10051676 10051958 -138731514 - AluJb SINE Alu 0 307 1 23 33 0 0 chr11 10051961 10051991 -138731481 + AT_rich Low_complexity Low_complexity 1 30 0 293 244 24 24 chr11 10052203 10052285 -138731187 - L1M4 LINE L1 -688 5496 5415 2456 62 3 10 chr11 10052338 10052647 -138730825 - AluY SINE Alu -1 310 4 2362 143 33 21 chr11 10052754 10053182 -138730290 + Tigger2a DNA MER2_type 1 433 -1 29 78 0 0 chr11 10053205 10053269 -138730203 + AT_rich Low_complexity Low_complexity 1 64 0 225 279 0 0 chr11 10053278 10053339 -138730133 - L1P2 LINE L1 -397 5758 5698 850 227 0 0 chr11 10053436 10053590 -138729882 + FRAM SINE Alu 1 154 -12 891 231 40 27 chr11 10053590 10053807 -138729665 + MIR SINE MIR 15 236 -26 303 332 48 48 chr11 10053975 10054225 -138729247 + MLT1K LTR MaLR 230 479 -109 377 276 10 0 chr11 10054228 10054326 -138729146 - L1ME LINE L1 -511 5610 5512 182 351 152 12 chr11 10055819 10055990 -138727482 + L2 LINE L2 2426 2620 -694 369 259 114 11 chr11 10055997 10056226 -138727246 - MLT1J LTR MaLR -4 507 211 321 47 0 0 chr11 10056226 10056269 -138727203 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 1930 130 7 18 chr11 10056269 10056553 -138726919 - AluSx SINE Alu -29 283 3 225 94 0 0 chr11 10056657 10056689 -138726783 + (CAT)n Simple_repeat Simple_repeat 2 33 0 443 256 55 91 chr11 10057090 10057289 -138726183 + MIR SINE MIR 7 198 -64 1580 149 0 102 chr11 10057343 10057665 -138725807 + AluJb SINE Alu 2 290 -22 6505 69 8 3 chr11 10057907 10058762 -138724710 + L1PA7 LINE L1 5285 6143 -11 28 29 0 0 chr11 10058762 10058797 -138724675 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 75 0 chr11 10058797 10058890 -138724582 + L2 LINE L2 3169 3268 -4 23 0 0 0 chr11 10060349 10060372 -138723100 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 10060713 10060736 -138722736 + AT_rich Low_complexity Low_complexity 1 23 0 2187 204 30 22 chr11 10061358 10061857 -138721615 - L1ME2 LINE L1 -146 6018 5516 3917 166 51 10 chr11 10062718 10063419 -138720053 - MER44D DNA MER2_type -3 602 1 555 146 0 10 chr11 10063955 10064058 -138719414 + L1MB2 LINE L1 5394 5495 -676 1018 116 0 7 chr11 10064061 10064207 -138719265 + AluSq/x SINE Alu 1 145 -167 2366 84 3 6 chr11 10064207 10064518 -138718954 + AluSg SINE Alu 1 310 0 3350 174 34 25 chr11 10064520 10065194 -138718278 + L1MB2 LINE L1 5491 6170 -1 408 276 39 31 chr11 10065197 10065324 -138718148 - MER5B DNA MER1_type -50 128 1 181 87 22 43 chr11 10066177 10066223 -138717249 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 10066538 10066581 -138716891 + AT_rich Low_complexity Low_complexity 1 43 0 2305 106 0 0 chr11 10067665 10067968 -138715504 - AluSx SINE Alu -9 303 1 227 371 24 67 chr11 10068410 10068620 -138714852 - L2 LINE L2 -420 2894 2694 2485 59 0 10 chr11 10068935 10069242 -138714230 - AluY SINE Alu -7 304 1 238 254 48 0 chr11 10069328 10069391 -138714081 - HsTC2 DNA Tc2 -1816 82 17 269 259 73 88 chr11 10070106 10070380 -138713092 + L1MEd LINE L1 569 838 -5281 453 276 32 40 chr11 10070604 10070854 -138712618 + L1MEd LINE L1 1010 1257 -4862 815 230 55 32 chr11 10070878 10071095 -138712377 - MIR SINE MIR 0 262 41 372 375 7 28 chr11 10071463 10071607 -138711865 + L2 LINE L2 3132 3272 0 28 0 0 0 chr11 10071720 10071748 -138711724 + AT_rich Low_complexity Low_complexity 1 28 0 1894 164 0 0 chr11 10071834 10072139 -138711333 + AluJo SINE Alu 1 305 -7 2416 122 8 19 chr11 10072541 10072909 -138710563 - THE1B LTR MaLR 0 364 1 2180 117 0 3 chr11 10073234 10073534 -138709938 - AluSx SINE Alu -13 299 1 23 33 0 0 chr11 10073921 10073951 -138709521 + AT_rich Low_complexity Low_complexity 1 30 0 2793 13 0 0 chr11 10076304 10076611 -138706861 + AluY SINE Alu 1 307 -4 2558 230 56 42 chr11 10077046 10077223 -138706249 - L1ME1 LINE L1 -47 6119 5946 1436 226 81 25 chr11 10077223 10077665 -138705807 + MLT1C LTR MaLR 1 467 0 2558 230 56 42 chr11 10077665 10078478 -138704994 - L1ME1 LINE L1 -220 5946 5114 2037 104 3 16 chr11 10078478 10078785 -138704687 - AluSx SINE Alu -9 303 1 2558 230 56 42 chr11 10078785 10078860 -138704612 - L1ME1 LINE L1 -1052 5114 5042 333 217 41 152 chr11 10078887 10078927 -138704545 - L1ME1 LINE L1 -10 6156 6113 1032 144 0 0 chr11 10078927 10079087 -138704385 + L1PA16 LINE L1 5988 6147 -19 333 217 41 152 chr11 10079087 10079336 -138704136 - L1ME1 LINE L1 -53 6113 5899 302 326 39 54 chr11 10079395 10079524 -138703948 - LTR67 LTR ERVL -386 171 45 964 258 32 0 chr11 10079979 10080227 -138703245 + L1M4 LINE L1 3584 3839 -2307 443 156 0 0 chr11 10080288 10080365 -138703107 + L1M4b LINE L1 95 171 -6688 2621 182 53 0 chr11 10080366 10080838 -138702634 + L1M4b LINE L1 595 1091 -5868 586 259 35 6 chr11 10080840 10081014 -138702458 + L1 LINE L1 2685 2863 -3283 1506 197 3 23 chr11 10081025 10081330 -138702142 - AluJo SINE Alu -13 299 1 10133 108 29 25 chr11 10081337 10083091 -138700381 - HUERS-P1 LTR ERV1 -1327 5271 3060 10107 101 13 67 chr11 10083078 10083436 -138700036 - HUERS-P1 LTR ERV1 -4659 1604 1228 * 297 0 0 0 chr11 10083436 10083469 -138700003 + (CA)n Simple_repeat Simple_repeat 2 34 0 10107 101 13 67 chr11 10083469 10084806 -138698666 - HUERS-P1 LTR ERV1 -5035 1228 1 448 162 0 0 chr11 10084806 10084874 -138698598 - LTR8 LTR ERV1 0 691 624 648 125 0 0 chr11 10084976 10085072 -138698400 + Tigger2 DNA MER2_type 649 744 -1974 1079 156 147 0 chr11 10085137 10085208 -138698264 + Tigger2 DNA MER2_type 2462 2521 -197 450 0 0 0 chr11 10085208 10085258 -138698214 + (TA)n Simple_repeat Simple_repeat 1 50 0 1079 156 147 0 chr11 10085258 10085410 -138698062 + Tigger2 DNA MER2_type 2521 2718 0 182 355 0 0 chr11 10085410 10085472 -138698000 - L2 LINE L2 -777 2537 2476 24 32 0 0 chr11 10085690 10085721 -138697751 + AT_rich Low_complexity Low_complexity 1 31 0 852 85 78 0 chr11 10085776 10085905 -138697567 - MER85 DNA T2_type 0 139 1 3031 248 42 45 chr11 10086034 10087065 -138696407 - L1ME LINE L1 -5041 1029 2 2145 115 20 7 chr11 10087240 10087536 -138695936 + AluSx SINE Alu 1 300 -12 402 302 65 103 chr11 10087536 10088250 -138695222 - L2 LINE L2 -107 3165 2456 2458 109 3 35 chr11 10088253 10088628 -138694844 + THE1B LTR MaLR 2 364 0 10527 98 32 38 chr11 10088628 10090218 -138693254 + THE1B-int LTR MaLR 1 1580 0 2400 98 0 70 chr11 10090221 10090458 -138693014 + THE1B LTR MaLR 4 205 -159 2075 121 10 14 chr11 10090458 10090755 -138692717 + AluSx SINE Alu 1 296 -16 2400 98 0 70 chr11 10090755 10090905 -138692567 + THE1B LTR MaLR 205 364 0 244 287 57 25 chr11 10091417 10091539 -138691933 - HAL1b LINE L1 -438 910 785 238 305 0 0 chr11 10091592 10091651 -138691821 - HAL1b LINE L1 -447 901 843 2185 105 0 0 chr11 10091785 10092071 -138691401 - AluSx SINE Alu -26 286 1 296 269 93 83 chr11 10092202 10092395 -138691077 + L3 LINE CR1 1219 1413 -164 322 258 206 7 chr11 10092810 10092965 -138690507 - L2 LINE L2 -542 2772 2587 807 129 0 0 chr11 10093019 10093135 -138690337 - AluJb SINE Alu -12 300 185 2293 97 0 0 chr11 10094009 10094318 -138689154 - AluY SINE Alu -2 309 1 1097 162 65 51 chr11 10094354 10094570 -138688902 + MER20 DNA MER1_type 1 219 0 466 347 50 8 chr11 10094986 10095343 -138688129 + ERVL LTR ERVL 869 1240 -4524 2340 86 3 0 chr11 10095598 10095890 -138687582 - AluSc SINE Alu -16 293 1 1750 321 83 48 chr11 10096108 10097365 -138686107 + ERVL LTR ERVL 1800 3099 -2665 2306 102 0 3 chr11 10097624 10097929 -138685543 - AluSq SINE Alu -9 304 1 743 261 74 110 chr11 10098066 10098317 -138685155 + MLT1J LTR MaLR 3 227 -284 1846 156 0 31 chr11 10098317 10098637 -138684835 - AluJb SINE Alu -2 310 1 743 261 74 110 chr11 10098637 10098913 -138684559 + MLT1J LTR MaLR 227 511 0 192 380 8 25 chr11 10098913 10099034 -138684438 - L2 LINE L2 -873 2441 2323 453 265 184 14 chr11 10100457 10100604 -138682868 - MIR3 SINE MIR -16 192 21 3227 199 88 53 chr11 10101270 10102739 -138680733 - L1MDb LINE L1 -4487 1919 407 2321 275 39 2 chr11 10102712 10103334 -138680138 - L1MDb LINE L1 -5753 656 12 * 628 111 10 0 chr11 10103352 10103451 -138680021 - L1MB7 LINE L1 -15 6169 6070 204 40 0 0 chr11 10103451 10103476 -138679996 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1629 123 0 8 chr11 10103485 10103737 -138679735 - L1PA10 LINE L1 -11 6157 5908 1372 144 35 42 chr11 10103738 10103990 -138679482 - L1MB7 LINE L1 -106 6078 5827 2081 89 3 73 chr11 10103990 10104305 -138679167 - AluY SINE Alu -18 293 1 1372 144 35 42 chr11 10104305 10104364 -138679108 - L1MB7 LINE L1 -357 5827 5769 623 241 85 66 chr11 10104355 10105837 -138677635 - L1MEc LINE L1 -4760 1636 36 * 2373 57 0 10 chr11 10105860 10106156 -138677316 - AluY SINE Alu -18 293 1 292 355 33 44 chr11 10106168 10106441 -138677031 - L2 LINE L2 -540 2774 2505 243 132 0 0 chr11 10106775 10106813 -138676659 - Alu SINE Alu -9 299 262 1064 42 0 0 chr11 10106816 10106934 -138676538 - AluSq/x SINE Alu -182 130 13 310 328 178 35 chr11 10107990 10108328 -138675144 + L3 LINE CR1 726 1111 -466 550 256 83 22 chr11 10108352 10108532 -138674940 - MIR SINE MIR -56 206 16 343 296 0 0 chr11 10108593 10108674 -138674798 - FRAM/FAM SINE Alu -88 78 1 840 116 6 110 chr11 10108675 10108848 -138674624 - L1M3 LINE L1 -500 5671 5517 855 173 105 0 chr11 10108851 10109013 -138674459 - AluJo SINE Alu -133 179 1 13143 129 59 19 chr11 10109058 10111382 -138672090 + Tigger1 DNA MER2_type 1 2418 0 334 284 45 0 chr11 10111619 10111707 -138671765 + L1ME LINE L1 5666 5757 -364 183 42 0 0 chr11 10111797 10111821 -138671651 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 157 148 17 chr11 10111849 10111964 -138671508 + L1ME4a LINE L1 5989 6118 -3 1883 151 11 0 chr11 10111977 10112262 -138671210 + AluJb SINE Alu 1 288 -24 201 205 0 121 chr11 10112430 10112513 -138670959 - L2 LINE L2 -4 3268 3196 345 333 42 0 chr11 10112600 10112696 -138670776 + L2 LINE L2 3121 3220 -52 855 202 5 31 chr11 10113370 10113563 -138669909 + MER20 DNA MER1_type 32 219 0 2157 128 0 0 chr11 10113845 10114135 -138669337 + AluSx SINE Alu 1 290 -22 1322 201 58 15 chr11 10114172 10114501 -138668971 + MER2 DNA MER2_type 2 344 0 2463 60 7 0 chr11 10115004 10115304 -138668168 + AluY SINE Alu 1 302 -9 771 262 62 9 chr11 10115874 10116084 -138667388 + MIR SINE MIR 4 224 -38 376 349 0 0 chr11 10117620 10117729 -138665743 - MIR SINE MIR -68 140 32 2232 102 3 3 chr11 10118490 10118785 -138664687 - AluSp SINE Alu -18 295 1 274 341 16 0 chr11 10119344 10119470 -138664002 + L3 LINE CR1 735 862 -715 357 256 7 66 chr11 10120817 10120954 -138662518 - MLT1J1 LTR MaLR 0 446 318 688 238 150 35 chr11 10120976 10121262 -138662210 - LTR36 LTR ERV1 0 611 293 338 75 60 0 chr11 10121327 10121394 -138662078 + GA-rich Low_complexity Low_complexity 2 72 0 596 269 56 15 chr11 10121483 10121680 -138661792 - MLT1J2 LTR MaLR -245 205 1 1398 230 104 47 chr11 10121764 10122097 -138661375 + MER21B LTR ERV1 1 370 -493 1539 185 20 30 chr11 10122097 10122399 -138661073 - AluJo SINE Alu -13 299 1 1398 230 104 47 chr11 10122399 10122535 -138660937 + MER21B LTR ERV1 370 497 -366 306 263 0 42 chr11 10122805 10122923 -138660549 + L1MC/D LINE L1 5720 5832 -1976 2216 153 8 99 chr11 10122923 10123037 -138660435 + L1MB2 LINE L1 5375 5498 -685 773 213 7 13 chr11 10123037 10123192 -138660280 + FRAM SINE Alu 1 154 -12 2216 153 8 99 chr11 10123192 10123600 -138659872 + L1MB2 LINE L1 5498 5849 -334 1654 140 12 43 chr11 10123638 10123700 -138659772 + L1MB2 LINE L1 5849 5911 -260 1838 91 0 0 chr11 10123700 10123941 -138659531 + AluY SINE Alu 71 311 0 1654 140 12 43 chr11 10123941 10124206 -138659266 + L1MB2 LINE L1 5911 6166 -5 652 210 57 17 chr11 10124279 10124455 -138659017 + L1M4 LINE L1 4676 4858 -1288 2088 165 21 35 chr11 10124518 10124942 -138658530 - L1MA5 LINE L1 0 6300 5883 855 196 80 9 chr11 10124953 10125178 -138658294 + L1M4 LINE L1 4856 5096 -1050 1258 146 0 101 chr11 10125532 10125585 -138657887 + AluJb SINE Alu 83 140 -172 2357 69 3 0 chr11 10125585 10125874 -138657598 + AluSc SINE Alu 1 290 -19 241 25 0 50 chr11 10125880 10125920 -138657552 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1258 146 0 101 chr11 10125920 10126106 -138657366 + AluJb SINE Alu 145 304 -8 210 259 0 0 chr11 10126239 10126297 -138657175 + (TA)n Simple_repeat Simple_repeat 1 58 0 487 264 136 13 chr11 10227491 10227646 -138555826 - MIR SINE MIR -72 190 17 481 206 112 9 chr11 10227869 10227976 -138555496 + L2 LINE L2 3196 3313 0 4476 200 30 8 chr11 10228278 10229225 -138554247 - L1P LINE L1 -5169 977 11 322 282 111 8 chr11 10229905 10230022 -138553450 + L2 LINE L2 3138 3266 -6 998 305 191 22 chr11 10231349 10231567 -138551905 + L2 LINE L2 2204 2384 -930 8554 53 1 0 chr11 10231567 10232535 -138550937 + LTR5 LTR ERVK 1 969 0 998 305 191 22 chr11 10232535 10232948 -138550524 + L2 LINE L2 2384 2942 -372 23 0 0 0 chr11 10233127 10233150 -138550322 + AT_rich Low_complexity Low_complexity 1 23 0 567 331 50 35 chr11 10233352 10233692 -138549780 - L1ME3 LINE L1 -332 5830 5480 2936 149 13 63 chr11 10233692 10234234 -138549238 + MLT2B2 LTR ERVL 1 515 0 567 331 50 35 chr11 10234234 10234352 -138549120 - L1ME3 LINE L1 -682 5480 5365 359 248 27 67 chr11 10234376 10234525 -138548947 - L1ME4a LINE L1 -190 5931 5789 360 0 0 0 chr11 10234613 10234653 -138548819 + (TG)n Simple_repeat Simple_repeat 2 41 0 1411 158 18 4 chr11 10234654 10234882 -138548590 - AluJo SINE Alu -39 273 43 607 153 0 9 chr11 10234982 10235093 -138548379 + LTR5 LTR ERVK 858 967 -2 405 348 128 19 chr11 10235244 10235722 -138547750 + L2 LINE L2 2638 3183 -130 360 64 0 0 chr11 10235914 10235961 -138547511 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 274 139 125 14 chr11 10237689 10237761 -138545711 + MIR3 SINE MIR 5 84 -124 265 336 66 0 chr11 10239317 10239439 -138544033 - L2 LINE L2 -1 3271 3142 1679 155 8 4 chr11 10239634 10239892 -138543580 - AluJo SINE Alu -27 285 27 7784 42 3 0 chr11 10240854 10241925 -138541547 - L1PA4 LINE L1 -4 6151 5082 26 0 0 0 chr11 10241995 10242021 -138541451 + AT_rich Low_complexity Low_complexity 1 26 0 1031 92 8 0 chr11 10242091 10242222 -138541250 + AluSp SINE Alu 39 170 -143 234 0 0 0 chr11 10242557 10242583 -138540889 + (T)n Simple_repeat Simple_repeat 1 26 0 242 261 38 76 chr11 10242693 10242850 -138540622 - MIR SINE MIR -40 222 72 647 210 59 41 chr11 10242909 10243106 -138540366 + MIR SINE MIR 64 262 0 1840 122 59 0 chr11 10243113 10243383 -138540089 - AluSg SINE Alu -24 286 1 1626 214 40 81 chr11 10243821 10244036 -138539436 + HAL1b LINE L1 794 1016 -332 1787 190 0 0 chr11 10244036 10244336 -138539136 + AluJb SINE Alu 1 300 -12 1626 214 40 81 chr11 10244336 10244699 -138538773 + HAL1b LINE L1 1016 1348 0 21 36 0 0 chr11 10245512 10245540 -138537932 + AT_rich Low_complexity Low_complexity 1 28 0 1755 207 36 66 chr11 10246877 10247132 -138536340 - LTR16C LTR ERVL -2 489 253 2345 104 0 0 chr11 10247132 10247429 -138536043 - AluSx SINE Alu -15 297 1 1755 207 36 66 chr11 10247429 10247642 -138535830 - LTR16C LTR ERVL -238 253 35 1982 146 3 19 chr11 10247771 10248079 -138535393 - AluJb SINE Alu -9 303 1 689 264 31 22 chr11 10248354 10248581 -138534891 + L1M4 LINE L1 4616 4844 -1302 251 118 0 0 chr11 10248612 10248646 -138534826 - U2 snRNA snRNA -154 34 1 244 279 54 58 chr11 10248720 10248996 -138534476 + L1M4 LINE L1 4931 5205 -941 2273 112 0 3 chr11 10249586 10249890 -138533582 + AluSx SINE Alu 1 303 -9 2375 84 3 0 chr11 10250103 10250400 -138533072 + AluSx SINE Alu 1 298 -14 1274 125 22 5 chr11 10250620 10250804 -138532668 + AluSg/x SINE Alu 111 297 -15 1665 169 54 30 chr11 10250810 10251142 -138532330 - THE1C LTR MaLR -35 340 1 306 176 20 0 chr11 10251142 10251190 -138532282 - AluSp SINE Alu -121 182 134 426 137 0 68 chr11 10251198 10251249 -138532223 - MLT1B LTR MaLR -318 72 26 1868 153 85 23 chr11 10251249 10251602 -138531870 + THE1C LTR MaLR 1 375 0 426 137 0 68 chr11 10251602 10251623 -138531849 - MLT1B LTR MaLR -364 26 5 297 75 0 0 chr11 10251679 10251719 -138531753 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2385 226 48 35 chr11 10251865 10252444 -138531028 - MLT1E LTR MaLR -2 591 5 256 353 58 14 chr11 10252848 10252987 -138530485 + L2 LINE L2 3169 3313 0 1875 177 3 0 chr11 10252989 10253289 -138530183 + AluJo SINE Alu 1 301 -11 288 224 15 30 chr11 10253688 10253755 -138529717 - L2 LINE L2 0 3272 3207 1988 167 0 0 chr11 10253874 10254180 -138529292 + AluJb SINE Alu 1 306 -6 288 0 0 0 chr11 10254180 10254212 -138529260 + (TA)n Simple_repeat Simple_repeat 2 33 0 1554 171 0 32 chr11 10254245 10254526 -138528946 - AluJo SINE Alu -40 272 1 958 231 192 34 chr11 10254526 10254937 -138528535 + L3 LINE CR1 636 1111 -466 380 332 82 26 chr11 10256031 10256263 -138527209 - MLT1L LTR MaLR 0 615 371 2570 51 0 0 chr11 10261397 10261693 -138521779 + AluY SINE Alu 1 296 -15 724 164 0 64 chr11 10261765 10261905 -138521567 - FLAM_C SINE Alu 0 133 3 670 254 86 35 chr11 10263259 10263491 -138519981 - MIR SINE MIR -12 250 7 363 96 0 0 chr11 10263894 10263946 -138519526 + (TG)n Simple_repeat Simple_repeat 1 52 0 182 377 0 14 chr11 10264410 10264479 -138518993 + L2 LINE L2 2557 2624 -690 215 236 0 83 chr11 10264485 10264557 -138518915 + L2 LINE L2 3248 3313 0 1781 179 101 31 chr11 10264700 10265058 -138518414 - MLT1B LTR MaLR -3 387 5 326 273 8 83 chr11 10265519 10265640 -138517832 - MER5B DNA MER1_type -66 112 1 433 286 70 36 chr11 10266764 10267065 -138516407 + L1MC5 LINE L1 7451 7761 -200 235 127 32 48 chr11 10267099 10267162 -138516310 + A-rich Low_complexity Low_complexity 4 65 0 370 254 0 25 chr11 10267209 10267327 -138516145 + L1MC5 LINE L1 7806 7920 -41 23 54 0 0 chr11 10267394 10267431 -138516041 + AT_rich Low_complexity Low_complexity 1 37 0 331 315 98 74 chr11 10267709 10267803 -138515669 + L1ME LINE L1 4915 5005 -1141 1577 129 0 0 chr11 10267803 10268020 -138515452 + AluJb SINE Alu 87 303 -9 331 315 98 74 chr11 10268020 10268344 -138515128 + L1ME LINE L1 5005 5343 -803 1746 148 16 0 chr11 10268389 10268645 -138514827 + AluJo SINE Alu 22 281 -31 215 59 0 29 chr11 10268651 10268685 -138514787 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2146 169 5 63 chr11 10268794 10269220 -138514252 + MER57A LTR ERV1 1 401 -2 712 252 191 36 chr11 10269228 10269537 -138513935 + L1MEd LINE L1 3 359 -5760 814 253 77 37 chr11 10269554 10269851 -138513621 + L1MEd LINE L1 515 823 -5296 384 259 79 79 chr11 10269945 10269989 -138513483 + L1ME LINE L1 5477 5520 -601 2326 104 0 3 chr11 10269989 10270288 -138513184 - AluSq SINE Alu -15 298 1 384 259 79 79 chr11 10270288 10270432 -138513040 + L1ME LINE L1 5519 5665 -456 1304 254 105 32 chr11 10270550 10271141 -138512331 + L1MEd LINE L1 966 1599 -4530 780 174 0 42 chr11 10271164 10271308 -138512164 - AluJo SINE Alu -174 138 1 870 236 117 34 chr11 10271325 10271770 -138511702 + L1MEd LINE L1 1647 2128 -4182 900 108 31 8 chr11 10271771 10271901 -138511571 + AluSq/x SINE Alu 1 133 -180 2189 128 0 16 chr11 10271913 10272225 -138511247 + AluSg SINE Alu 1 307 -3 210 37 0 0 chr11 10272228 10272255 -138511217 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3290 221 43 66 chr11 10272255 10272429 -138511043 + L1MEd LINE L1 2104 2280 -3849 1892 155 0 32 chr11 10272429 10272745 -138510727 + AluJb SINE Alu 1 306 -6 3290 221 43 66 chr11 10272745 10273439 -138510033 + L1MEd LINE L1 2280 2988 -3141 2005 129 4 0 chr11 10273439 10273756 -138509716 + AluSx SINE Alu 1 318 0 3290 221 43 66 chr11 10273756 10274483 -138508989 + L1MEd LINE L1 2988 3825 -2304 23 0 0 0 chr11 10274860 10274883 -138508589 + AT_rich Low_complexity Low_complexity 1 23 0 1253 273 44 9 chr11 10274939 10275394 -138508078 - L1MC4a LINE L1 -1788 6020 5550 1985 219 67 39 chr11 10275427 10276145 -138507327 + MER21B LTR ERV1 15 809 -54 270 273 68 23 chr11 10276187 10276319 -138507153 - L1MC4a LINE L1 -2267 5541 5404 * 486 317 128 29 chr11 10276308 10276884 -138506588 - L1MC4a LINE L1 -1825 4321 3669 537 16 0 0 chr11 10276884 10276946 -138506526 + (TG)n Simple_repeat Simple_repeat 1 62 0 486 317 128 29 chr11 10276946 10277026 -138506446 - L1MC4a LINE L1 -2477 3669 3598 704 285 65 5 chr11 10277959 10278173 -138505299 + MIR SINE MIR 29 255 -7 2751 111 3 6 chr11 10278173 10278535 -138504937 + THE1B LTR MaLR 1 361 -3 258 303 91 24 chr11 10278700 10278865 -138504607 + L2 LINE L2 2919 3094 -178 2301 117 0 0 chr11 10279035 10279344 -138504128 - AluSx SINE Alu -3 309 1 816 272 128 13 chr11 10280325 10280638 -138502834 + MLT1I LTR MaLR 7 355 -54 1098 215 173 16 chr11 10280953 10281365 -138502107 + MLT1F LTR MaLR 1 541 -1 1420 120 93 31 chr11 10282068 10282248 -138501224 + L1MA8 LINE L1 5976 6182 -109 9348 108 16 4 chr11 10282248 10283530 -138499942 - HSMAR2 DNA Mariner -4 1298 1 1420 120 93 31 chr11 10283530 10283640 -138499832 + L1MA8 LINE L1 6182 6284 -7 258 221 180 49 chr11 10283784 10283906 -138499566 - MIR SINE MIR -65 197 60 667 124 18 44 chr11 10284292 10284405 -138499067 + L1MB2 LINE L1 6060 6169 -2 260 282 65 0 chr11 10284743 10284866 -138498606 - L1MC4 LINE L1 -1139 6646 6544 246 303 0 22 chr11 10284844 10284933 -138498539 + L1MC4 LINE L1 6617 6703 -1339 * 395 309 99 4 chr11 10286127 10286286 -138497186 - MIR3 SINE MIR -22 186 17 225 0 0 0 chr11 10286661 10286686 -138496786 + (T)n Simple_repeat Simple_repeat 1 25 0 647 210 59 41 chr11 10287012 10287209 -138496263 + MIR SINE MIR 64 262 0 974 149 0 0 chr11 10287216 10287364 -138496108 - AluSg/x SINE Alu -24 288 141 1779 127 16 65 chr11 10287488 10287811 -138495661 + MLT1B LTR MaLR 84 390 0 412 337 45 22 chr11 10288748 10288926 -138494546 - L2 LINE L2 -220 3052 2871 2254 135 32 46 chr11 10289034 10289197 -138494275 - L1MC3 LINE L1 0 7785 7621 1859 183 0 0 chr11 10289197 10289497 -138493975 - AluJb SINE Alu -12 300 1 2254 135 32 46 chr11 10289497 10289771 -138493701 - L1MC3 LINE L1 -164 7621 7354 309 291 41 76 chr11 10289855 10290027 -138493445 + L2 LINE L2 2708 2873 -441 1195 176 0 82 chr11 10290045 10290323 -138493149 - AluJo SINE Alu -4 308 54 846 138 8 0 chr11 10290323 10290446 -138493026 + AluJb SINE Alu 1 124 -188 5590 37 0 0 chr11 10290449 10291462 -138492010 - L1PA4 LINE L1 -410 5745 4733 3331 33 10 0 chr11 10291462 10291850 -138491622 + L1PA4 LINE L1 5756 6150 -5 885 210 34 0 chr11 10291855 10292031 -138491441 + AluJb SINE Alu 131 312 0 385 176 47 3 chr11 10292032 10292113 -138491359 - AluJ/FLAM SINE Alu -240 62 1 529 309 72 8 chr11 10292171 10292436 -138491036 - L2 LINE L2 -776 2538 2257 848 200 19 0 chr11 10292862 10293017 -138490455 - FRAM SINE Alu -13 163 6 1660 177 20 23 chr11 10293063 10293362 -138490110 - AluJb SINE Alu -14 298 1 33449 97 12 14 chr11 10293616 10298415 -138485057 + L1P LINE L1 11 4797 -1349 232 169 0 31 chr11 10298402 10298467 -138485005 + L1MC4 LINE L1 6640 6702 -1340 * 333 207 98 0 chr11 10298476 10298558 -138484914 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chr11 10298558 10298589 -138484883 + (TATG)n Simple_repeat Simple_repeat 1 31 0 878 172 53 13 chr11 10298589 10298719 -138484753 + L1PA6 LINE L1 4794 4917 -1229 360 64 0 0 chr11 10298719 10298766 -138484706 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6719 59 29 5 chr11 10298768 10300093 -138483379 + L1PA6 LINE L1 4799 6145 -9 878 172 53 13 chr11 10300093 10300206 -138483266 + L1PA6 LINE L1 4917 5061 -1085 374 277 63 20 chr11 10300230 10300423 -138483049 + MLT1L LTR MaLR 232 531 -84 1076 169 0 0 chr11 10300440 10300606 -138482866 - AluJ SINE Alu -13 299 134 388 304 8 24 chr11 10300634 10300759 -138482713 + MER5B DNA MER1_type 2 124 -54 774 242 0 0 chr11 10300760 10300909 -138482563 - AluJo SINE Alu -27 285 137 277 239 0 0 chr11 10300909 10300976 -138482496 + MER5B DNA MER1_type 112 178 0 745 248 129 0 chr11 10301917 10302127 -138481345 + MIR SINE MIR 26 262 0 4906 254 41 11 chr11 10302163 10303546 -138479926 + HERVL LTR ERVL 3563 5086 -678 22 35 0 0 chr11 10304139 10304168 -138479304 + AT_rich Low_complexity Low_complexity 1 29 0 433 264 136 13 chr11 10304292 10304447 -138479025 - MIR SINE MIR -72 190 17 441 206 112 9 chr11 10304670 10304777 -138478695 + L2 LINE L2 3196 3313 0 246 105 0 0 chr11 10304927 10304965 -138478507 + (GA)n Simple_repeat Simple_repeat 2 39 0 1521 85 27 0 chr11 10305063 10305286 -138478186 - L1MA8 LINE L1 -7 6284 6056 258 323 19 77 chr11 10306182 10306337 -138477135 + L2 LINE L2 3127 3272 0 24 0 0 0 chr11 10306684 10306708 -138476764 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 125 0 chr11 10306708 10306820 -138476652 - AluJo SINE Alu -185 127 2 1847 176 0 22 chr11 10307198 10307671 -138475801 - AluJb SINE Alu 0 466 1 1953 154 17 0 chr11 10307750 10308042 -138475430 - AluJb SINE Alu -15 297 1 929 251 103 48 chr11 10309527 10309765 -138473707 + MLT1G LTR MaLR 4 262 -333 1698 236 137 42 chr11 10309765 10310307 -138473165 - MLT1E LTR MaLR 0 593 1 929 251 103 48 chr11 10310307 10310359 -138473113 + MLT1G LTR MaLR 262 310 -285 1081 234 5 5 chr11 10310368 10310573 -138472899 + MLT1G LTR MaLR 346 550 -40 206 323 20 20 chr11 10312179 10312278 -138471194 + MIR SINE MIR 43 141 -67 276 211 0 0 chr11 10313025 10313077 -138470395 + L2 LINE L2 3219 3270 -2 562 281 80 28 chr11 10313282 10313570 -138469902 + L1ME4a LINE L1 5600 5905 -216 449 51 0 0 chr11 10313678 10313737 -138469735 + Alu SINE Alu 243 301 -10 1027 288 94 15 chr11 10314715 10315253 -138468219 + L2 LINE L2 2725 3313 0 328 111 0 0 chr11 10315619 10315664 -138467808 - MLT2C1 LTR ERVL -2 518 474 221 180 80 0 chr11 10315722 10315772 -138467700 + GA-rich Low_complexity Low_complexity 2 55 0 1720 171 48 12 chr11 10315772 10316106 -138467366 - MLT2C1 LTR ERVL -48 349 4 1187 280 138 6 chr11 10316418 10317240 -138466232 - L2 LINE L2 -81 3232 2302 2570 111 8 13 chr11 10317647 10318024 -138465448 - THE1C LTR MaLR 0 375 1 182 361 55 6 chr11 10318408 10318591 -138464881 - L2 LINE L2 -499 2815 2624 1008 198 5 40 chr11 10319507 10319709 -138463763 - MER21B LTR ERV1 -373 490 296 203 213 43 0 chr11 10319843 10319890 -138463582 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3136 176 55 105 chr11 10319939 10320864 -138462608 - L1MA10 LINE L1 -99 6235 5357 219 253 165 0 chr11 10321251 10321330 -138462142 + MIR SINE MIR 64 155 -107 553 225 9 0 chr11 10321652 10321763 -138461709 - L2 LINE L2 -2 3311 3200 275 289 10 10 chr11 10322351 10322448 -138461024 + MIR SINE MIR 41 137 -71 991 271 86 21 chr11 10323078 10323461 -138460011 + MLT1K LTR MaLR 181 588 0 1897 172 30 9 chr11 10324109 10324259 -138459213 + MER2 DNA MER2_type 1 146 -199 7221 114 46 35 chr11 10324259 10325476 -138457996 + Tigger3b DNA MER2_type 1 1231 0 1897 172 30 9 chr11 10325476 10325662 -138457810 + MER2 DNA MER2_type 146 344 -1 2347 112 0 0 chr11 10325683 10325988 -138457484 + AluSq SINE Alu 1 305 -8 30 93 0 0 chr11 10327027 10327113 -138456359 + AT_rich Low_complexity Low_complexity 1 86 0 796 100 0 17 chr11 10327245 10327365 -138456107 - L1PB4 LINE L1 -2 6154 6037 1463 192 12 51 chr11 10327823 10328156 -138455316 + L1ME2 LINE L1 5842 6161 -3 1332 198 23 0 chr11 10328887 10329145 -138454327 - MER58B DNA MER1_type 0 341 78 1550 108 0 0 chr11 10329147 10329341 -138454131 - AluSg/x SINE Alu -14 298 105 232 330 34 0 chr11 10329370 10329458 -138454014 - MER58B DNA MER1_type -250 91 1 238 291 27 63 chr11 10330780 10330898 -138452574 - MIR SINE MIR -66 142 37 329 290 97 43 chr11 10331053 10331239 -138452233 + MIR3 SINE MIR 3 198 -10 902 284 81 50 chr11 10331707 10332310 -138451162 - HAL1 LINE L1 -1885 622 1 2211 288 83 38 chr11 10332331 10333248 -138450224 + L2 LINE L2 1853 2727 -586 1096 217 159 0 chr11 10333248 10333506 -138449966 - AluJo SINE Alu -3 299 1 2211 288 83 38 chr11 10333506 10333759 -138449713 + L2 LINE L2 2727 2967 -346 1899 89 58 122 chr11 10333759 10334119 -138449353 - MER1B DNA MER1_type 0 337 1 2211 288 83 38 chr11 10334119 10334343 -138449129 + L2 LINE L2 2967 3313 0 2374 96 0 0 chr11 10335470 10335773 -138447699 - AluSc SINE Alu -6 303 1 1775 100 93 7 chr11 10336493 10336762 -138446710 + AluSx SINE Alu 1 292 -20 1544 186 24 17 chr11 10336851 10337142 -138446330 - AluJo SINE Alu -19 293 1 2147 92 43 0 chr11 10338427 10338709 -138444763 - AluSc SINE Alu -15 294 1 273 254 59 67 chr11 10338978 10339287 -138444185 - Charlie1 DNA MER1_type -1027 1734 1378 31565 105 25 55 chr11 10340720 10347043 -138436429 - L1PA7 LINE L1 -14 6140 12 267 281 45 0 chr11 10347056 10347145 -138436327 + MER112 DNA MER1_type 164 256 -4 499 207 121 35 chr11 10347636 10347810 -138435662 - ORSL DNA AcHobo -76 199 11 693 283 105 41 chr11 10348039 10348428 -138435044 - MLT1K LTR MaLR -10 578 165 192 194 129 16 chr11 10348696 10348758 -138434714 - MIR SINE MIR -69 193 125 180 308 0 0 chr11 10348767 10348819 -138434653 - MIR SINE MIR -15 247 196 237 268 7 80 chr11 10348846 10348984 -138434488 - LTR67 LTR ERVL -4 553 426 282 184 0 0 chr11 10349111 10349160 -138434312 - MLT1K LTR MaLR -339 249 201 1549 238 118 9 chr11 10349307 10349749 -138433723 - LTR33 LTR ERVL -31 490 1 466 314 7 7 chr11 10349760 10349900 -138433572 - MIR SINE MIR -118 144 5 778 280 71 4 chr11 10350496 10350735 -138432737 - MIR SINE MIR 0 262 8 396 194 71 51 chr11 10351087 10351185 -138432287 + MLT1J2 LTR MaLR 307 406 -44 3627 119 22 8 chr11 10351209 10351795 -138431677 - L1MA3 LINE L1 -2 6303 5710 8014 215 36 28 chr11 10352139 10354313 -138429159 + L1M4 LINE L1 2183 4374 -1772 7129 193 23 20 chr11 10354521 10356971 -138426501 + L1MB7 LINE L1 3709 6165 -19 1856 174 3 7 chr11 10357160 10357459 -138426013 + AluJb SINE Alu 15 312 0 2628 118 3 3 chr11 10358037 10358401 -138425071 - THE1B LTR MaLR 0 364 1 1210 228 55 78 chr11 10358676 10359317 -138424155 - L1M4 LINE L1 -2447 3699 3074 830 147 0 23 chr11 10359363 10359492 -138423980 - FLAM_C SINE Alu -17 126 1 325 195 0 122 chr11 10359493 10359535 -138423937 - L1M4 LINE L1 -3059 3087 3041 2227 113 3 0 chr11 10359535 10359837 -138423635 - AluSq SINE Alu -10 303 1 325 195 0 122 chr11 10359837 10359917 -138423555 - L1M4 LINE L1 -3105 3041 2980 254 257 119 0 chr11 10360736 10360837 -138422635 - L1ME4a LINE L1 -195 5926 5814 517 279 40 35 chr11 10361804 10362005 -138421467 + LTR33 LTR ERVL 320 521 0 298 265 111 8 chr11 10363045 10363162 -138420310 + L2 LINE L2 3138 3266 -6 243 295 0 0 chr11 10363797 10363858 -138419614 + MLT1J LTR MaLR 229 289 -222 2810 3 0 16 chr11 10363867 10364176 -138419296 - AluYb8 SINE Alu -14 304 1 430 214 152 45 chr11 10364240 10364418 -138419054 + MLT1J LTR MaLR 304 500 -11 481 202 40 8 chr11 10365062 10365186 -138418286 - L1MB4 LINE L1 0 6180 6053 23 33 0 0 chr11 10365192 10365222 -138418250 + AT_rich Low_complexity Low_complexity 1 30 0 521 98 24 0 chr11 10365222 10365304 -138418168 - L1PA16 LINE L1 -4 6162 6079 204 206 48 16 chr11 10367404 10367467 -138416005 + G-rich Low_complexity Low_complexity 3 67 0 2597 236 143 39 chr11 10367547 10368277 -138415195 + Charlie7 DNA MER1_type 32 931 -1681 2337 89 0 16 chr11 10368277 10368581 -138414891 + AluSx SINE Alu 1 299 -13 2597 236 143 39 chr11 10368581 10369018 -138414454 + Charlie7 DNA MER1_type 931 1321 -1291 677 296 126 22 chr11 10369096 10369454 -138414018 - Charlie7 DNA MER1_type -2217 395 1 2363 227 115 50 chr11 10369649 10369986 -138413486 + Charlie7 DNA MER1_type 1345 1659 -953 414 57 0 0 chr11 10369986 10370039 -138413433 + (CA)n Simple_repeat Simple_repeat 2 54 0 2363 227 115 50 chr11 10370039 10370818 -138412654 + Charlie7 DNA MER1_type 1659 2533 -79 207 291 97 63 chr11 10370975 10371563 -138411909 - L2 LINE L2 -828 2486 1879 432 0 0 0 chr11 10371608 10371656 -138411816 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 0 0 0 chr11 10371710 10371746 -138411726 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr11 10372250 10372305 -138411167 + GC_rich Low_complexity Low_complexity 1 55 0 197 211 35 0 chr11 10373959 10374016 -138409456 + L2 LINE L2 3255 3313 0 712 279 68 13 chr11 10374107 10374312 -138409160 - MIR SINE MIR -10 252 31 2334 104 0 3 chr11 10374312 10374621 -138408851 - AluSx SINE Alu -4 308 1 712 279 68 13 chr11 10374621 10374652 -138408820 - MIR SINE MIR -231 31 3 336 248 178 0 chr11 10374722 10374823 -138408649 - L2 LINE L2 0 3313 3195 2192 118 3 19 chr11 10374943 10375257 -138408215 - AluSc SINE Alu 0 309 1 578 156 91 65 chr11 10375819 10375973 -138407499 + MER103 DNA DNA 1 158 -8 1761 175 13 13 chr11 10378340 10378648 -138404824 - AluJb SINE Alu -4 308 1 1881 140 18 0 chr11 10378989 10379261 -138404211 + AluJb SINE Alu 6 282 -30 390 235 0 12 chr11 10379522 10379607 -138403865 - FLAM_A SINE Alu -27 106 23 312 178 0 96 chr11 10379595 10379668 -138403804 + AluJb SINE Alu 88 153 -149 * 372 224 84 19 chr11 10380755 10380862 -138402610 - MIR3 SINE MIR -6 202 89 191 250 17 0 chr11 10381145 10381205 -138402267 + MIR SINE MIR 2 62 -200 372 233 60 21 chr11 10381208 10381354 -138402118 + MIR SINE MIR 12 160 -63 363 81 70 0 chr11 10381384 10381470 -138402002 + (TA)n Simple_repeat Simple_repeat 1 92 0 1880 161 0 17 chr11 10381470 10381769 -138401703 - AluJb SINE Alu -18 294 1 2187 124 0 7 chr11 10381780 10382079 -138401393 - AluSx SINE Alu -15 297 1 247 196 0 0 chr11 10382114 10382165 -138401307 + GA-rich Low_complexity Low_complexity 2 52 0 537 278 124 51 chr11 10383458 10383590 -138399882 - L2 LINE L2 -30 3283 3162 1132 236 167 5 chr11 10383590 10384039 -138399433 - LTR33A LTR ERVL 0 523 2 537 278 124 51 chr11 10384039 10384405 -138399067 - L2 LINE L2 -151 3162 2749 608 213 46 51 chr11 10385355 10385552 -138397920 + MIR SINE MIR 64 259 -3 627 328 25 4 chr11 10385599 10385834 -138397638 - MIR SINE MIR -17 245 6 646 281 74 0 chr11 10386307 10386510 -138396962 + MIR SINE MIR 9 226 -36 29446 94 17 50 chr11 10386795 10387350 -138396122 + L1PA7 LINE L1 12 584 -5570 2302 101 3 0 chr11 10387350 10387648 -138395824 + AluSq SINE Alu 1 299 -14 29446 94 17 50 chr11 10387648 10391128 -138392344 + L1PA7 LINE L1 584 3676 -2478 2817 3 0 3 chr11 10391128 10391428 -138392044 + AluYa5 SINE Alu 1 299 -12 29446 94 17 50 chr11 10391428 10393826 -138389646 + L1PA7 LINE L1 3676 6154 0 1889 146 0 0 chr11 10394092 10394386 -138389086 + AluSx SINE Alu 1 294 -18 1639 164 0 0 chr11 10394396 10394665 -138388807 + AluSx SINE Alu 39 307 -5 197 284 62 119 chr11 10395425 10395601 -138387871 + L2 LINE L2 3057 3222 -50 190 313 24 12 chr11 10396237 10396320 -138387152 + L3 LINE CR1 1305 1388 -189 2345 141 58 22 chr11 10396373 10396785 -138386687 - MSTA LTR MaLR 0 428 2 2210 229 86 11 chr11 10396909 10397482 -138385990 + MLT1E2 LTR MaLR 11 626 0 233 168 0 178 chr11 10398140 10398247 -138385225 - L2 LINE L2 -588 2726 2639 613 291 171 0 chr11 10398403 10398613 -138384859 - MIR SINE MIR -15 247 2 732 261 52 36 chr11 10401644 10401950 -138381522 - L1MC4a LINE L1 -1763 6045 5735 325 229 219 0 chr11 10403096 10403192 -138380280 + MIR SINE MIR 28 144 -118 3140 161 51 4 chr11 10403566 10404100 -138379372 - MER68 LTR ERV1 0 562 4 1854 137 3 44 chr11 10404565 10404880 -138378592 - AluJb SINE Alu -10 302 1 764 252 56 39 chr11 10404980 10405214 -138378258 + MIR SINE MIR 20 257 -5 264 283 164 45 chr11 10406076 10406253 -138377219 - MIR SINE MIR 0 262 65 674 237 97 43 chr11 10406539 10406818 -138376654 - L2 LINE L2 -1 3312 3019 1706 155 14 7 chr11 10407309 10407599 -138375873 - AluSx SINE Alu -20 292 1 287 259 98 27 chr11 10408179 10408291 -138375181 + L3 LINE CR1 1450 1569 -8 899 76 18 1 chr11 10409784 10409917 -138373555 - L1PA10 LINE L1 -196 5972 5855 897 80 0 43 chr11 10409917 10410052 -138373420 + L1PA11 LINE L1 6043 6174 0 2098 122 0 0 chr11 10411740 10412035 -138371437 - AluSq SINE Alu -18 295 1 287 264 36 2 chr11 10412394 10412514 -138370958 + MER117 DNA MER1_type 2 159 -38 1579 316 60 17 chr11 10413501 10414153 -138369319 - L2 LINE L2 -588 2726 2047 317 289 148 0 chr11 10414639 10414767 -138368705 - L2 LINE L2 -1 3312 3166 196 295 156 49 chr11 10414925 10415335 -138368137 - L2 LINE L2 -337 2977 2524 316 313 84 8 chr11 10415783 10415916 -138367556 + MIR SINE MIR 19 160 -65 3500 158 16 6 chr11 10415949 10416570 -138366902 + L1MB4 LINE L1 5554 6180 0 2212 97 0 3 chr11 10417971 10418269 -138365203 - AluSg1 SINE Alu -12 297 1 1960 115 33 13 chr11 10419593 10419897 -138363575 - AluSg SINE Alu 0 310 1 378 254 52 37 chr11 10419908 10420042 -138363430 + MIR SINE MIR 90 225 -37 206 274 32 0 chr11 10420653 10420715 -138362757 + (CATG)n Simple_repeat Simple_repeat 1 64 0 313 297 55 0 chr11 10421054 10421145 -138362327 - L2 LINE L2 -5 3308 3213 413 340 53 5 chr11 10421368 10421556 -138361916 + MIR3 SINE MIR 1 197 -11 436 325 143 51 chr11 10422097 10422525 -138360947 - L1ME4a LINE L1 0 6121 5655 218 283 0 0 chr11 10423021 10423067 -138360405 + polypyrimidine Low_complexity Low_complexity 4 49 0 386 239 107 50 chr11 10423518 10423677 -138359795 + MIR SINE MIR 65 232 -30 1292 190 145 21 chr11 10423870 10424243 -138359229 - Charlie1 DNA MER1_type 0 2761 2343 253 310 17 0 chr11 10424243 10424301 -138359171 - Charlie1 DNA MER1_type -2702 59 1 488 16 16 0 chr11 10424498 10424559 -138358913 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 244 250 29 0 chr11 10425086 10425154 -138358318 - L2 LINE L2 -30 3242 3173 865 235 171 7 chr11 10425201 10425482 -138357990 + L2 LINE L2 2986 3312 -1 257 227 182 11 chr11 10426852 10426940 -138356532 + MIR3 SINE MIR 99 201 -7 232 229 62 0 chr11 10427077 10427125 -138356347 + MIR3 SINE MIR 152 202 -6 * 262 328 117 8 chr11 10427123 10427251 -138356221 - MIR3 SINE MIR -51 157 16 189 0 0 0 chr11 10427278 10427299 -138356173 + (TG)n Simple_repeat Simple_repeat 2 22 0 272 235 0 0 chr11 10427460 10427511 -138355961 + L2 LINE L2 3263 3313 0 2250 129 6 24 chr11 10431529 10431870 -138351602 + MER1B DNA MER1_type 2 336 -1 224 217 0 22 chr11 10433016 10433062 -138350410 - L3b LINE CR1 -10 1573 1529 30 0 0 0 chr11 10433134 10433164 -138350308 + AT_rich Low_complexity Low_complexity 1 30 0 183 288 75 12 chr11 10433417 10433497 -138349975 - MIR SINE MIR -118 144 60 2027 113 14 0 chr11 10434060 10434352 -138349120 - AluSx SINE Alu -10 302 7 348 207 83 33 chr11 10435503 10435624 -138347848 - HAL1 LINE L1 0 2507 2381 475 261 78 22 chr11 10435713 10435905 -138347567 - L1MC4a LINE L1 -325 5796 5682 4954 233 65 27 chr11 10436622 10438161 -138345311 + L1ME4a LINE L1 37 1634 -4762 1215 204 83 6 chr11 10438175 10438513 -138344959 + L1ME4a LINE L1 4302 4665 -1550 * 1722 220 28 8 chr11 10438508 10438908 -138344564 + L1ME4a LINE L1 5595 6002 -231 275 232 29 0 chr11 10438913 10438990 -138344482 + L1MA10 LINE L1 6074 6148 -14 219 292 31 0 chr11 10439016 10439081 -138344391 + MIR3 SINE MIR 133 199 -9 2555 129 5 15 chr11 10439876 10440258 -138343214 - Tigger3b DNA MER2_type -14 1217 840 1367 97 88 23 chr11 10440258 10440474 -138342998 + MER30 DNA MER1_type 1 230 0 * 4720 102 80 26 chr11 10440474 10441276 -138342196 - Tigger3b DNA MER2_type -384 847 3 192 229 82 49 chr11 10441396 10441457 -138342015 - L2 LINE L2 -51 3221 3159 375 231 0 22 chr11 10441763 10441854 -138341618 + L1ME4a LINE L1 6101 6189 -1 216 318 15 0 chr11 10442389 10442455 -138341017 - L2 LINE L2 -653 2661 2595 716 293 104 41 chr11 10442780 10443118 -138340354 + L3 LINE CR1 988 1346 -231 654 242 108 36 chr11 10443125 10443348 -138340124 - MIR SINE MIR 0 262 24 236 356 0 11 chr11 10443397 10443484 -138339988 + L3 LINE CR1 1371 1456 -121 390 266 85 0 chr11 10443538 10443632 -138339840 + MER5A DNA MER1_type 10 111 -78 457 302 117 9 chr11 10443664 10443886 -138339586 + MIR SINE MIR 6 251 -11 2218 53 49 11 chr11 10444411 10444696 -138338776 + AluY SINE Alu 1 296 -15 2312 94 3 0 chr11 10446521 10446819 -138336653 + AluY SINE Alu 1 299 -12 1581 240 94 72 chr11 10447135 10448011 -138335461 - L2 LINE L2 -4 3309 2419 455 236 43 36 chr11 10448774 10448914 -138334558 - L2 LINE L2 -5 3308 3168 578 276 105 0 chr11 10449070 10449298 -138334174 + MLT1L LTR MaLR 1 252 -363 232 325 8 32 chr11 10449284 10449410 -138334062 + MLT1L LTR MaLR 466 588 -27 * 215 408 33 0 chr11 10449611 10449731 -138333741 - L2 LINE L2 -560 2754 2631 184 224 271 35 chr11 10449771 10449856 -138333616 + L2 LINE L2 3163 3267 -5 23 54 0 0 chr11 10450792 10450829 -138332643 + AT_rich Low_complexity Low_complexity 1 37 0 2384 78 3 0 chr11 10451115 10451408 -138332064 + AluSg SINE Alu 1 294 -16 378 0 0 0 chr11 10452516 10452558 -138330914 + (CA)n Simple_repeat Simple_repeat 2 43 0 230 298 0 0 chr11 10452994 10453051 -138330421 + L2 LINE L2 3208 3264 -8 240 35 0 0 chr11 10454497 10454526 -138328946 + (CA)n Simple_repeat Simple_repeat 2 30 0 597 318 80 29 chr11 10454580 10454819 -138328653 - MIR SINE MIR -10 252 2 26 0 0 0 chr11 10454889 10454915 -138328557 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 10455235 10455257 -138328215 + AT_rich Low_complexity Low_complexity 1 22 0 187 330 171 0 chr11 10455518 10455606 -138327866 + L3 LINE CR1 505 607 -970 481 312 42 89 chr11 10455979 10456383 -138327089 - L2 LINE L2 -37 3235 2851 347 293 249 9 chr11 10456406 10456635 -138326837 + L3 LINE CR1 636 919 -658 748 126 21 98 chr11 10456637 10456780 -138326692 - FLAM_C SINE Alu -10 133 2 630 310 191 40 chr11 10456798 10457327 -138326145 + L3 LINE CR1 934 1542 -35 2390 220 21 14 chr11 10457531 10458044 -138325428 - MER34 LTR ERV1 0 542 26 224 204 0 23 chr11 10458627 10458671 -138324801 + L2 LINE L2 3227 3269 -3 215 289 0 0 chr11 10461800 10461838 -138321634 - L2 LINE L2 -25 3247 3210 228 312 87 33 chr11 10461857 10461949 -138321523 - MIR SINE MIR -102 106 12 830 286 57 0 chr11 10462039 10462284 -138321188 - MIR SINE MIR -2 260 2 206 369 10 19 chr11 10462297 10462400 -138321072 + L2 LINE L2 3198 3299 -14 4708 201 43 43 chr11 10462541 10462900 -138320572 + L1ME1 LINE L1 4106 4464 -1702 2656 130 70 2 chr11 10462900 10463314 -138320158 + L1PA16 LINE L1 5718 6159 -7 4708 201 43 43 chr11 10463314 10463814 -138319658 + L1ME1 LINE L1 4464 4963 -1203 8982 170 117 11 chr11 10463814 10465401 -138318071 - MER52A LTR ERV1 0 1755 1 4708 201 43 43 chr11 10465401 10466606 -138316866 + L1ME1 LINE L1 4963 6161 -5 25 51 0 0 chr11 10466780 10466819 -138316653 + AT_rich Low_complexity Low_complexity 1 39 0 2221 96 0 10 chr11 10467286 10467606 -138315866 - AluSc SINE Alu 0 309 1 604 303 23 27 chr11 10467752 10467947 -138315525 - MIR3 SINE MIR -11 197 2 2561 60 0 0 chr11 10470061 10470361 -138313111 - AluY SINE Alu -11 300 1 1442 247 72 49 chr11 10471151 10471708 -138311764 + MLT1F1 LTR MaLR 1 567 0 1467 189 4 19 chr11 10472113 10472373 -138311099 - LTR26B LTR ERV1 0 531 276 3061 147 157 136 chr11 10472375 10472760 -138310712 + L1MC3 LINE L1 6740 7115 -670 229 323 21 10 chr11 10472760 10472856 -138310616 + MLT1F1 LTR MaLR 35 131 -436 3061 147 157 136 chr11 10472856 10473399 -138310073 + L1MC3 LINE L1 7115 7785 0 859 214 80 5 chr11 10473835 10474036 -138309436 + MIR SINE MIR 23 238 -24 365 310 239 6 chr11 10474360 10474695 -138308777 + L3 LINE CR1 1052 1464 -113 2153 116 0 0 chr11 10474703 10474988 -138308484 + AluSx SINE Alu 3 287 -25 364 204 65 21 chr11 10475005 10475098 -138308374 - MER5A DNA MER1_type -55 134 38 222 174 0 0 chr11 10475409 10475455 -138308017 + (TG)n Simple_repeat Simple_repeat 1 46 0 317 306 46 10 chr11 10477063 10477259 -138306213 - L1ME LINE L1 -383 5738 5536 21 0 0 0 chr11 10477355 10477376 -138306096 + AT_rich Low_complexity Low_complexity 1 21 0 424 302 0 0 chr11 10477464 10477580 -138305892 + MIR SINE MIR 75 190 -72 597 296 136 51 chr11 10478223 10478863 -138304609 + L2 LINE L2 2579 3271 -1 444 311 119 49 chr11 10479012 10479619 -138303853 - L2 LINE L2 -314 2999 2336 247 329 47 12 chr11 10479650 10479735 -138303737 + MIR SINE MIR 45 132 -76 340 220 159 15 chr11 10479765 10479897 -138303575 + HAL1b LINE L1 987 1137 -211 191 324 29 0 chr11 10480054 10480122 -138303350 - L2 LINE L2 -999 2315 2246 248 189 27 14 chr11 10480399 10480473 -138302999 - HAL1b LINE L1 0 1348 1274 308 228 234 18 chr11 10480532 10480699 -138302773 - HAL1b LINE L1 -211 1137 935 201 158 0 0 chr11 10480710 10480748 -138302724 + T-rich Low_complexity Low_complexity 1 38 0 251 238 42 83 chr11 10480770 10480938 -138302534 - L1ME4a LINE L1 -12 6109 5949 1984 89 48 10 chr11 10480950 10481241 -138302231 - AluY SINE Alu -9 302 1 404 330 22 60 chr11 10481513 10481695 -138301777 + MIR3 SINE MIR 5 179 -29 305 272 133 63 chr11 10482113 10482216 -138301256 + MIR SINE MIR 3 122 -140 2598 56 13 0 chr11 10482216 10482522 -138300950 - AluY SINE Alu -1 310 1 305 272 133 63 chr11 10482522 10482576 -138300896 + MIR SINE MIR 122 171 -91 1466 183 103 3 chr11 10482576 10482876 -138300596 - MER2 DNA MER2_type -15 330 1 674 286 34 49 chr11 10484217 10484470 -138299002 + MIR SINE MIR 2 249 -13 758 165 8 16 chr11 10484936 10485063 -138298409 - FLAM_A SINE Alu -5 137 12 876 185 14 28 chr11 10485086 10485302 -138298170 - AluSp SINE Alu -12 301 89 1251 84 60 0 chr11 10485404 10485571 -138297901 - L1PA7 LINE L1 -14 6140 5964 21 0 0 0 chr11 10485606 10485627 -138297845 + AT_rich Low_complexity Low_complexity 1 21 0 480 194 0 11 chr11 10485631 10485724 -138297748 + MIR SINE MIR 63 154 -108 202 188 0 0 chr11 10485956 10485988 -138297484 + polypyrimidine Low_complexity Low_complexity 5 36 0 574 322 180 7 chr11 10485988 10486542 -138296930 - L2 LINE L2 -8 3264 2613 229 217 0 0 chr11 10487015 10487061 -138296411 - MIR3 SINE MIR -3 205 160 286 273 0 0 chr11 10489113 10489168 -138294304 - L2 LINE L2 -8 3264 3210 758 301 38 15 chr11 10489904 10490166 -138293306 + Charlie8 DNA MER1_type 18 285 -2132 276 203 14 14 chr11 10490225 10490294 -138293178 + Charlie8 DNA MER1_type 2340 2408 -9 486 0 0 0 chr11 10490618 10490672 -138292800 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 447 246 96 62 chr11 10490684 10490907 -138292565 - MIR SINE MIR -13 249 19 196 307 221 6 chr11 10491146 10491309 -138292163 - MIR3 SINE MIR -3 205 8 1095 46 0 0 chr11 10491908 10492038 -138291434 - L1PA5 LINE L1 -429 5726 5597 3699 46 5 0 chr11 10492038 10492467 -138291005 + L1PA5 LINE L1 5719 6151 -3 5033 125 67 57 chr11 10492512 10493296 -138290176 - MER21A LTR ERV1 0 931 135 2256 113 0 3 chr11 10493296 10493597 -138289875 + AluSx SINE Alu 1 300 -12 5033 125 67 57 chr11 10493597 10493718 -138289754 - MER21A LTR ERV1 -796 135 17 1354 142 8 25 chr11 10493870 10494110 -138289362 - AluSp SINE Alu -77 236 1 2188 124 0 0 chr11 10494111 10494410 -138289062 - AluSx SINE Alu -13 299 1 239 240 128 8 chr11 10494768 10494893 -138288579 + MIR SINE MIR 120 259 -3 249 355 0 11 chr11 10495045 10495138 -138288334 + MIR SINE MIR 19 110 -152 502 275 116 9 chr11 10495233 10495466 -138288006 + MARNA DNA Mariner 261 518 -68 801 169 0 0 chr11 10496020 10496144 -138287328 + FLAM_C SINE Alu 3 126 -17 1980 190 87 3 chr11 10498035 10498414 -138285058 - MLT1E2 LTR MaLR 0 626 216 469 136 57 23 chr11 10498438 10498526 -138284946 - AluJb SINE Alu -24 288 198 2553 59 7 0 chr11 10498538 10498841 -138284631 - AluY SINE Alu -5 306 2 486 169 124 90 chr11 10498842 10499019 -138284453 - MLT1E2 LTR MaLR -348 157 1 3238 127 91 2 chr11 10499251 10499842 -138283630 - L1MA5A LINE L1 0 6297 5654 404 291 40 29 chr11 10500490 10500754 -138282718 - MLT1J2 LTR MaLR 0 450 155 215 344 117 23 chr11 10502347 10502475 -138280997 - L2 LINE L2 -16 3256 3117 678 244 27 45 chr11 10502803 10503024 -138280448 + MIR SINE MIR 21 237 -25 249 296 112 65 chr11 10504678 10504847 -138278625 + MER5B DNA MER1_type 1 177 -1 325 324 14 14 chr11 10505259 10505404 -138278068 + CT-rich Low_complexity Low_complexity 2 146 0 201 306 16 0 chr11 10508993 10509055 -138274417 + L2 LINE L2 3209 3271 -1 382 319 84 51 chr11 10510370 10510676 -138272796 - L2 LINE L2 -14 3299 2974 2226 99 14 0 chr11 10510676 10510960 -138272512 + AluSx SINE Alu 1 288 -24 382 319 84 51 chr11 10510960 10511067 -138272405 - L2 LINE L2 -339 2974 2872 * 1224 301 163 18 chr11 10511061 10512097 -138271375 - L2 LINE L2 -951 2363 1178 342 0 0 0 chr11 10512551 10512589 -138270883 + (TA)n Simple_repeat Simple_repeat 2 39 0 372 274 210 14 chr11 10512675 10512894 -138270578 + MIR SINE MIR 1 262 0 195 327 0 0 chr11 10513552 10513604 -138269868 - MIR SINE MIR -171 91 40 292 258 113 0 chr11 10513656 10513753 -138269719 - MIR SINE MIR -63 145 38 186 277 0 0 chr11 10514213 10514260 -138269212 + L2 LINE L2 3006 3052 -220 2372 103 0 0 chr11 10514305 10514606 -138268866 - AluSx SINE Alu -11 301 1 780 227 22 16 chr11 10515770 10515955 -138267517 + MIR SINE MIR 64 249 -13 1872 140 7 26 chr11 10516230 10516537 -138266935 - AluJb SINE Alu -11 301 1 216 365 24 0 chr11 10516655 10516740 -138266732 + L2 LINE L2 3088 3174 -98 189 0 0 0 chr11 10517309 10517330 -138266142 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 980 88 8 0 chr11 10517330 10517455 -138266017 - AluSg1 SINE Alu -183 126 1 692 249 116 37 chr11 10518666 10519020 -138264452 + MLT1L LTR MaLR 6 387 -228 390 194 187 52 chr11 10520036 10520191 -138263281 - MER5B DNA MER1_type -1 177 2 360 302 99 39 chr11 10520600 10520832 -138262640 - L1ME4a LINE L1 -2 6119 5874 342 271 52 0 chr11 10520869 10520965 -138262507 - L1ME4a LINE L1 -324 5797 5697 2018 146 7 0 chr11 10523008 10523302 -138260170 - AluSx SINE Alu -16 296 1 3037 128 15 2 chr11 10523776 10524253 -138259219 - L1PA13 LINE L1 -3 6160 5678 1373 283 59 50 chr11 10524257 10524869 -138258603 - L1MEd LINE L1 -4653 1657 1052 856 255 60 82 chr11 10524869 10525284 -138258188 - MLT1I LTR MaLR -3 406 1 1373 283 59 50 chr11 10525284 10525409 -138258063 - L1MEd LINE L1 -5258 1052 930 1567 150 6 104 chr11 10525409 10525735 -138257737 - AluJo SINE Alu -18 294 1 1373 283 59 50 chr11 10525735 10525995 -138257477 - L1MEd LINE L1 -5380 930 578 873 304 88 23 chr11 10526073 10526504 -138256968 - L1MEd LINE L1 -5655 464 6 252 275 110 0 chr11 10526517 10526626 -138256846 + L1P LINE L1 5269 5389 -762 338 288 108 36 chr11 10526630 10526880 -138256592 + L1ME LINE L1 5411 5678 -443 239 317 117 0 chr11 10527287 10527407 -138256065 + L2 LINE L2 3139 3272 0 332 282 71 18 chr11 10527856 10528026 -138255446 + L2 LINE L2 2580 2758 -556 281 325 41 35 chr11 10528144 10528313 -138255159 + L2 LINE L2 2921 3090 -182 343 326 39 48 chr11 10528423 10528653 -138254819 + L2 LINE L2 2575 2802 -512 252 321 19 28 chr11 10529555 10529661 -138253811 + MER94 DNA DNA 17 121 -13 325 308 14 14 chr11 10530426 10530569 -138252903 - MIR SINE MIR -85 177 35 497 236 61 14 chr11 10530856 10531004 -138252468 + MER103 DNA DNA 10 164 -2 1874 146 43 15 chr11 10531389 10531717 -138251755 - MER1B DNA MER1_type 0 337 1 1530 194 36 47 chr11 10531719 10532079 -138251393 + MLT1A1 LTR MaLR 10 365 0 624 282 107 0 chr11 10533531 10533747 -138249725 - MIR SINE MIR -15 247 9 948 173 6 45 chr11 10535123 10535302 -138248170 - AluJb SINE Alu -138 174 3 2052 166 80 13 chr11 10535480 10535957 -138247515 - L1M4 LINE L1 -751 5395 4887 638 174 0 35 chr11 10536169 10536284 -138247188 + AluJo SINE Alu 37 147 -165 217 238 95 0 chr11 10536284 10536347 -138247125 - MIR3 SINE MIR -130 78 10 377 303 62 28 chr11 10536800 10537016 -138246456 - MIR SINE MIR -18 244 16 314 293 185 48 chr11 10537309 10537827 -138245645 - L3 LINE CR1 -235 1342 754 329 319 28 7 chr11 10538013 10538157 -138245315 + L3 LINE CR1 1422 1568 -9 1226 282 142 29 chr11 10539901 10540650 -138242822 + HAL1b LINE L1 66 898 -450 2006 234 45 19 chr11 10540664 10541198 -138242274 + MER74B LTR ERVL 65 612 -10 2421 93 6 3 chr11 10541244 10541587 -138241885 + L1P LINE L1 4571 4914 -1232 184 133 0 0 chr11 10541689 10541719 -138241753 + MIR SINE MIR 112 141 -67 1789 164 27 3 chr11 10541846 10542175 -138241297 + L1MB3 LINE L1 5845 6181 -2 1715 137 22 30 chr11 10542550 10542821 -138240651 - AluJb SINE Alu -22 290 22 275 219 16 0 chr11 10542856 10542920 -138240552 - L2 LINE L2 0 3313 3249 234 0 0 0 chr11 10542920 10542946 -138240526 + (CA)n Simple_repeat Simple_repeat 2 27 0 506 291 112 6 chr11 10542975 10543154 -138240318 - MIR SINE MIR -1 261 64 314 223 165 39 chr11 10548248 10548351 -138235121 - MIR SINE MIR -126 136 21 1052 71 0 0 chr11 10550412 10550539 -138232933 - AluSg/x SINE Alu -8 304 178 1153 226 167 15 chr11 10550904 10551306 -138232166 + MLT1K LTR MaLR 126 588 0 336 300 80 89 chr11 10551370 10551607 -138231865 + L2 LINE L2 2945 3179 -93 2313 118 7 0 chr11 10552180 10552530 -138230942 - AluSx SINE Alu 0 352 1 718 165 83 0 chr11 10552605 10552738 -138230734 + MER5A DNA MER1_type 46 189 0 231 197 105 0 chr11 10552740 10552816 -138230656 + LTR37B LTR ERV1 115 198 -270 * 776 256 47 24 chr11 10552790 10553107 -138230365 + LTR37B LTR ERV1 88 452 -16 2659 51 0 3 chr11 10553107 10553419 -138230053 - AluY SINE Alu 0 311 1 776 256 47 24 chr11 10553419 10553433 -138230039 + LTR37B LTR ERV1 452 464 -4 2782 105 50 121 chr11 10554256 10554798 -138228674 - L1MA9 LINE L1 -5 6307 5817 297 0 0 0 chr11 10554798 10554831 -138228641 + (TG)n Simple_repeat Simple_repeat 2 34 0 2782 105 50 121 chr11 10554831 10554935 -138228537 - L1MA9 LINE L1 -495 5817 5707 379 206 235 42 chr11 10556053 10556203 -138227269 + MIR SINE MIR 16 188 -74 24 0 0 0 chr11 10556237 10556261 -138227211 + AT_rich Low_complexity Low_complexity 1 24 0 1415 183 12 20 chr11 10556269 10556521 -138226951 - AluJo SINE Alu -62 250 1 338 282 91 92 chr11 10556604 10557109 -138226363 - L2 LINE L2 -6 3266 2741 404 301 120 0 chr11 10558178 10558361 -138225111 + Charlie8 DNA MER1_type 1 205 -2212 2240 124 7 0 chr11 10558957 10559264 -138224208 - AluSx SINE Alu -3 309 1 351 266 13 0 chr11 10559968 10560047 -138223425 - L2 LINE L2 -1 3271 3192 563 234 174 12 chr11 10560809 10560976 -138222496 + MIR SINE MIR 7 200 -62 387 167 65 37 chr11 10560982 10561090 -138222382 - MER53 DNA DNA 0 189 79 564 194 97 0 chr11 10561105 10561208 -138222264 - FLAM_A SINE Alu -29 113 1 183 311 256 0 chr11 10561853 10561943 -138221529 - MIR SINE MIR -107 155 43 271 252 63 54 chr11 10562644 10562755 -138220717 + MIR SINE MIR 81 192 -70 2478 47 3 44 chr11 10562927 10563244 -138220228 + AluY SINE Alu 1 304 -7 195 146 0 0 chr11 10563757 10563798 -138219674 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 199 313 54 54 chr11 10563798 10563910 -138219562 - L2 LINE L2 -24 3248 3137 421 273 41 8 chr11 10564230 10564351 -138219121 + MIR SINE MIR 47 171 -91 31 26 0 0 chr11 10564408 10564446 -138219026 + AT_rich Low_complexity Low_complexity 1 38 0 428 250 116 0 chr11 10564582 10564694 -138218778 + MIR SINE MIR 116 240 -22 183 296 0 0 chr11 10565117 10565161 -138218311 + L2 LINE L2 3187 3230 -83 190 80 0 0 chr11 10565235 10565260 -138218212 - L2 LINE L2 -17 3296 3272 451 299 22 15 chr11 10565386 10565520 -138217952 + MIR SINE MIR 56 190 -72 218 289 0 0 chr11 10565716 10565768 -138217704 - MIR SINE MIR -17 245 194 773 260 54 27 chr11 10565778 10566001 -138217471 + MIR SINE MIR 34 262 0 239 325 0 26 chr11 10566002 10566079 -138217393 - MIR SINE MIR -100 162 88 200 281 0 0 chr11 10566394 10566451 -138217021 + CT-rich Low_complexity Low_complexity 3 59 0 686 287 96 9 chr11 10568575 10568805 -138214667 - MIR SINE MIR -12 250 1 564 299 111 27 chr11 10569090 10569461 -138214011 + MLT1K LTR MaLR 170 571 -17 525 287 81 6 chr11 10569606 10569780 -138213692 + MIR SINE MIR 2 188 -74 209 261 0 0 chr11 10570094 10570140 -138213332 - L2 LINE L2 -18 3254 3209 254 228 202 35 chr11 10570577 10570691 -138212781 - L2 LINE L2 0 3313 3181 593 373 159 7 chr11 10571229 10571650 -138211822 + L3 LINE CR1 986 1470 -107 230 197 115 16 chr11 10572416 10572477 -138210995 - MIR SINE MIR -118 144 78 661 296 30 15 chr11 10572657 10572881 -138210591 - MIR SINE MIR -23 239 5 459 166 80 160 chr11 10573208 10573395 -138210077 - MIR SINE MIR -56 206 35 270 281 33 52 chr11 10573858 10574011 -138209461 - MIR3 SINE MIR -30 178 29 495 225 159 0 chr11 10574355 10574493 -138208979 + MIR SINE MIR 52 211 -51 273 196 0 95 chr11 10574828 10574996 -138208476 + (CTGTG)n Simple_repeat Simple_repeat 4 155 0 1991 181 65 14 chr11 10576209 10576623 -138206849 - MER63B DNA MER1_type -1 435 1 468 307 132 60 chr11 10576719 10577441 -138206031 + L2 LINE L2 2275 3097 -175 2555 168 19 41 chr11 10577441 10577953 -138205519 - MLT1D LTR MaLR 0 505 5 468 307 132 60 chr11 10577953 10578143 -138205329 + L2 LINE L2 3097 3272 0 1065 122 0 0 chr11 10578188 10578327 -138205145 + AluSq/x SINE Alu 1 139 -174 334 254 0 0 chr11 10579526 10579593 -138203879 - L2 LINE L2 0 3313 3247 258 172 62 16 chr11 10579607 10579671 -138203801 + L2 LINE L2 3019 3085 -187 469 235 83 0 chr11 10579907 10580029 -138203443 - MIR SINE MIR -65 143 41 239 282 82 24 chr11 10580529 10580614 -138202858 + MIR3 SINE MIR 68 157 -51 690 302 108 23 chr11 10580713 10581110 -138202362 + MLT1K LTR MaLR 158 588 0 243 0 0 0 chr11 10581190 10581217 -138202255 + (CCCTAA)n Simple_repeat Simple_repeat 2 28 0 663 326 89 8 chr11 10582260 10582496 -138200976 - MIR SINE MIR -6 256 2 404 352 6 17 chr11 10583795 10583971 -138199501 + MER5B DNA MER1_type 4 177 -1 898 248 33 0 chr11 10584493 10584707 -138198765 + MER58A DNA MER1_type 1 221 -3 266 258 70 15 chr11 10585345 10585488 -138197984 + MIR SINE MIR 76 228 -34 2173 149 17 61 chr11 10586644 10587052 -138196420 + MLT1B LTR MaLR 1 390 0 4337 205 60 28 chr11 10587247 10587494 -138195978 + L1MB7 LINE L1 4186 4424 -1760 2067 133 0 0 chr11 10587494 10587821 -138195651 + AluSx SINE Alu 1 327 0 4337 205 60 28 chr11 10587821 10589065 -138194407 + L1MB7 LINE L1 4424 5803 -381 2275 107 0 3 chr11 10589065 10589356 -138194116 + AluSx SINE Alu 1 290 -22 4337 205 60 28 chr11 10589356 10589741 -138193731 + L1MB7 LINE L1 5803 6174 -10 291 241 24 12 chr11 10589810 10589893 -138193579 + MIR3 SINE MIR 108 191 -17 324 263 143 30 chr11 10590125 10590258 -138193214 - L2 LINE L2 -1 3312 3165 607 308 155 24 chr11 10592476 10592902 -138190570 + MLT1K LTR MaLR 106 587 -1 2984 145 34 6 chr11 10593711 10594058 -138189414 - L1MB5 LINE L1 -36 6138 5767 395 68 17 0 chr11 10594058 10594117 -138189355 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2984 145 34 6 chr11 10594117 10594325 -138189147 - L1MB5 LINE L1 -407 5767 5566 389 236 130 26 chr11 10594484 10594672 -138188800 - MIR SINE MIR -47 215 9 1062 156 6 0 chr11 10595292 10595465 -138188007 - L1MB5 LINE L1 -43 6131 5958 482 271 90 30 chr11 10595465 10595660 -138187812 - MIR SINE MIR -52 210 10 564 172 35 17 chr11 10595892 10596008 -138187464 + MER103 DNA DNA 48 165 -1 1895 142 17 0 chr11 10596056 10596352 -138187120 + AluSq SINE Alu 1 301 -12 910 156 17 8 chr11 10596367 10596605 -138186867 + GA-rich Low_complexity Low_complexity 1 240 0 674 220 226 0 chr11 10596696 10596873 -138186599 + MIR SINE MIR 8 224 -38 350 307 0 10 chr11 10597671 10597772 -138185700 - MIR SINE MIR -68 140 41 681 291 58 0 chr11 10598084 10598273 -138185199 + MIR SINE MIR 60 259 -3 515 328 75 33 chr11 10599143 10599475 -138183997 + Charlie7 DNA MER1_type 108 453 -2159 381 276 162 42 chr11 10599574 10599882 -138183590 + LTR33 LTR ERVL 1 345 -176 544 180 69 65 chr11 10599918 10600163 -138183309 + Charlie7 DNA MER1_type 2366 2611 -1 4148 37 0 0 chr11 10600185 10600712 -138182760 + L1PA3 LINE L1 5657 6183 0 1611 135 113 14 chr11 10601225 10601507 -138181965 + AluSx SINE Alu 1 310 -2 1421 170 0 45 chr11 10601519 10601807 -138181665 + AluJb SINE Alu 25 299 -13 267 240 240 0 chr11 10602253 10602353 -138181119 - MIR SINE MIR -32 176 52 205 261 141 22 chr11 10602850 10602942 -138180530 + MIR SINE MIR 154 256 -6 345 300 140 33 chr11 10603957 10603984 -138179488 - MIR SINE MIR -89 173 150 1292 150 12 38 chr11 10603984 10604224 -138179248 + MER46A DNA MER2_type 1 234 -2 345 300 140 33 chr11 10604224 10604346 -138179126 - MIR SINE MIR -112 150 8 231 288 0 0 chr11 10604809 10604882 -138178590 + MER113 DNA MER1_type? 21 93 -428 1026 258 9 0 chr11 10604898 10605123 -138178349 + MIR SINE MIR 36 262 0 518 212 112 39 chr11 10605132 10605315 -138178157 + MER113 DNA MER1_type? 127 295 -226 355 236 85 19 chr11 10605315 10605421 -138178051 - MER81 DNA DNA -1 113 1 518 212 112 39 chr11 10605421 10605573 -138177899 + MER113 DNA MER1_type? 295 519 -2 332 222 111 87 chr11 10605681 10606050 -138177422 + L1ME4a LINE L1 5742 6119 -2 1844 112 65 0 chr11 10606172 10606449 -138177023 + AluSx SINE Alu 1 295 -17 209 175 0 0 chr11 10606861 10606901 -138176571 + L2 LINE L2 3256 3295 -18 270 265 60 86 chr11 10607286 10607403 -138176069 - L2 LINE L2 -1 3271 3158 329 331 63 35 chr11 10607930 10608072 -138175400 + MIR SINE MIR 92 237 -25 280 229 83 104 chr11 10608388 10608532 -138174940 + MIR SINE MIR 13 153 -55 311 270 22 0 chr11 10609047 10609136 -138174336 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 453 286 34 20 chr11 10610223 10610370 -138173102 + MIR SINE MIR 103 251 -11 440 157 36 3 chr11 10610547 10610689 -138172783 - MER53 DNA DNA -2 187 1 421 339 83 12 chr11 10611190 10611358 -138172114 - MER5A DNA MER1_type -3 186 7 324 0 0 0 chr11 10611448 10611484 -138171988 + (TG)n Simple_repeat Simple_repeat 1 36 0 509 301 125 23 chr11 10611519 10611735 -138171737 - MIR SINE MIR -16 246 9 998 251 150 6 chr11 10611925 10612282 -138171190 + L1MC4a LINE L1 5530 5761 -403 242 281 0 0 chr11 10612282 10612367 -138171105 + (CATA)n Simple_repeat Simple_repeat 1 85 0 660 243 17 17 chr11 10612669 10612850 -138170622 - L1MD3 LINE L1 -11 7984 7804 294 320 72 16 chr11 10612888 10613013 -138170459 - L2 LINE L2 0 3272 3141 240 305 86 23 chr11 10613680 10613808 -138169664 - MIR SINE MIR -33 229 94 311 261 62 50 chr11 10613884 10614045 -138169427 + HAL1 LINE L1 26 188 -2319 1004 225 67 11 chr11 10614216 10614500 -138168972 + L1MC4a LINE L1 6272 6571 -1237 642 49 0 0 chr11 10614521 10614603 -138168869 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1232 90 0 24 chr11 10614621 10614788 -138168684 + THE1B LTR MaLR 200 362 -2 11719 86 24 5 chr11 10614790 10616341 -138167131 + THE1B-int LTR MaLR 1 1580 0 2314 121 3 62 chr11 10616341 10616508 -138166964 + THE1B LTR MaLR 1 176 -188 2678 16 0 7 chr11 10616508 10616817 -138166655 + AluYb8 SINE Alu 1 307 -11 2314 121 3 62 chr11 10616817 10617036 -138166436 + THE1B LTR MaLR 176 364 0 1069 216 127 27 chr11 10617037 10617402 -138166070 + L1MC4 LINE L1 7460 7934 -61 2075 116 3 13 chr11 10617402 10617705 -138165767 - AluSx SINE Alu -12 300 1 1069 216 127 27 chr11 10617705 10617761 -138165711 + L1MC4 LINE L1 7934 7983 -12 211 222 0 0 chr11 10618085 10618121 -138165351 + MER5B DNA MER1_type 1 36 -142 * 236 264 0 56 chr11 10618120 10618192 -138165280 - MER5B DNA MER1_type -85 93 26 248 157 17 209 chr11 10618216 10618271 -138165201 - MER5B DNA MER1_type -5 173 109 1865 107 29 0 chr11 10618271 10618543 -138164929 + AluSx SINE Alu 1 280 -32 261 0 0 0 chr11 10618543 10618572 -138164900 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 248 157 17 209 chr11 10618572 10618630 -138164842 - MER5B DNA MER1_type -67 111 81 270 267 116 27 chr11 10618693 10618839 -138164633 + HAL1 LINE L1 745 903 -1604 1302 263 25 50 chr11 10618842 10619242 -138164230 + L2 LINE L2 2921 3310 -3 687 265 130 41 chr11 10619242 10619759 -138163713 + HAL1 LINE L1 896 1458 -1049 1916 154 0 0 chr11 10620018 10620324 -138163148 + AluSx SINE Alu 1 306 -6 43 0 0 0 chr11 10620436 10620479 -138162993 + AT_rich Low_complexity Low_complexity 1 43 0 317 288 54 9 chr11 10620634 10620745 -138162727 - L2 LINE L2 -3 3269 3154 250 313 22 22 chr11 10621133 10621267 -138162205 - L2 LINE L2 -495 2819 2686 212 226 19 0 chr11 10621345 10621398 -138162074 + MIR SINE MIR 88 141 -121 460 259 90 55 chr11 10621740 10621941 -138161531 - L2 LINE L2 -832 2482 2275 237 237 26 26 chr11 10622315 10622410 -138161062 + GA-rich Low_complexity Low_complexity 2 152 0 216 0 0 0 chr11 10623075 10623099 -138160373 + (TTA)n Simple_repeat Simple_repeat 2 25 0 183 326 0 0 chr11 10623138 10623181 -138160291 + L2 LINE L2 3137 3179 -93 734 284 19 45 chr11 10623218 10623486 -138159986 - MIR SINE MIR 0 262 2 296 186 0 34 chr11 10624161 10624220 -138159252 - LTR67 LTR ERVL -9 548 492 303 122 0 0 chr11 10624431 10624480 -138158992 + (TCC)n Simple_repeat Simple_repeat 1 49 0 647 285 105 6 chr11 10624757 10624987 -138158485 - MIR SINE MIR -12 250 1 516 309 157 47 chr11 10625304 10625750 -138157722 - L3 LINE CR1 -193 1384 890 1620 257 90 23 chr11 10626283 10626805 -138156667 + L2 LINE L2 2094 2650 -664 1162 137 26 6 chr11 10626821 10627053 -138156419 - AluJb SINE Alu -6 306 26 1186 223 156 35 chr11 10627064 10627113 -138156359 + L2 LINE L2 2692 2734 -579 2031 126 7 3 chr11 10627113 10627415 -138156057 - AluSx SINE Alu -9 303 1 1186 223 156 35 chr11 10627415 10627921 -138155551 + L2 LINE L2 2734 3311 -2 182 308 0 0 chr11 10627954 10628006 -138155466 - MIR SINE MIR -101 161 110 443 252 71 24 chr11 10628709 10628836 -138154636 - L2 LINE L2 0 3272 3140 206 62 31 0 chr11 10628836 10628868 -138154604 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 883 268 68 8 chr11 10628870 10629105 -138154367 - MIR SINE MIR -5 257 9 273 306 97 73 chr11 10629351 10629557 -138153915 - MIR SINE MIR -6 256 46 581 136 64 129 chr11 10630259 10630312 -138153160 - AluJ SINE Alu -171 131 76 2247 64 40 0 chr11 10630312 10630608 -138152864 - AluY SINE Alu -3 308 1 581 136 64 129 chr11 10630608 10630694 -138152778 - AluJ SINE Alu -226 76 1 252 299 65 0 chr11 10631421 10631498 -138151974 + L2 LINE L2 2624 2705 -609 187 275 208 20 chr11 10632347 10632496 -138150976 - MER5B DNA MER1_type -1 177 1 465 310 75 16 chr11 10632959 10633343 -138150129 + MLT1L LTR MaLR 121 584 -31 378 331 93 65 chr11 10635062 10635719 -138147753 + L2 LINE L2 2596 3264 -8 2013 151 0 0 chr11 10636041 10636345 -138147127 + AluSx SINE Alu 1 304 -8 1724 144 56 105 chr11 10637109 10637519 -138145953 + MLT1B LTR MaLR 1 390 0 382 253 69 120 chr11 10637532 10637759 -138145713 - MIR SINE MIR -53 209 3 1900 167 0 0 chr11 10638854 10639166 -138144306 + AluSx SINE Alu 1 312 0 547 248 35 14 chr11 10639227 10639368 -138144104 + MER117 DNA MER1_type 1 144 -53 2229 94 3 3 chr11 10639465 10639774 -138143698 - AluSp SINE Alu -2 311 3 418 154 0 0 chr11 10641031 10641123 -138142349 - AluJo SINE Alu 0 311 220 1134 164 0 0 chr11 10641123 10641300 -138142172 - AluJo SINE Alu -135 177 1 1586 144 55 74 chr11 10641712 10641965 -138141507 - MLT1F1 LTR MaLR -261 306 59 713 110 0 0 chr11 10641965 10642065 -138141407 + HY3 scRNA scRNA 1 100 -1 1586 144 55 74 chr11 10642065 10642123 -138141349 - MLT1F1 LTR MaLR -508 59 1 301 332 135 52 chr11 10642137 10642366 -138141106 - L2 LINE L2 -45 3227 2980 1879 125 14 0 chr11 10642781 10643061 -138140411 + AluSx SINE Alu 24 307 -5 189 305 17 0 chr11 10644256 10644315 -138139157 - L2 LINE L2 -91 3222 3163 247 313 30 0 chr11 10645061 10645160 -138138312 - LTR67 LTR ERVL -17 540 439 232 257 86 38 chr11 10645374 10645479 -138137993 - LTR67 LTR ERVL -349 208 99 201 319 124 9 chr11 10645626 10645739 -138137733 - MIR SINE MIR -34 228 103 2019 169 0 3 chr11 10645752 10646065 -138137407 - AluJb SINE Alu 0 312 1 2124 101 10 42 chr11 10646813 10647121 -138136351 + AluSq SINE Alu 1 298 -15 4486 125 5 65 chr11 10647245 10647980 -138135492 + LTR8 LTR ERV1 1 691 0 333 0 0 0 chr11 10648004 10648041 -138135431 + (TG)n Simple_repeat Simple_repeat 2 38 0 392 196 54 71 chr11 10648042 10648154 -138135318 + MLT1F1 LTR MaLR 88 197 -370 210 71 0 0 chr11 10648154 10648182 -138135290 + (TC)n Simple_repeat Simple_repeat 2 29 0 589 247 80 7 chr11 10648187 10648337 -138135135 + MER96 DNA MER1_type? 12 172 -3 391 297 16 104 chr11 10648848 10649097 -138134375 - MIR SINE MIR -34 228 2 1967 122 18 0 chr11 10649181 10649467 -138134005 + AluSx SINE Alu 2 292 -20 366 249 127 24 chr11 10649666 10649831 -138133641 + MIR SINE MIR 25 206 -56 32 57 0 0 chr11 10649831 10649884 -138133588 + AT_rich Low_complexity Low_complexity 1 53 0 938 161 0 0 chr11 10650277 10650414 -138133058 + FRAM SINE Alu 1 137 -39 210 71 0 0 chr11 10650417 10650445 -138133027 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 287 254 40 111 chr11 10650673 10650860 -138132612 - MLT1L LTR MaLR -360 228 87 203 139 38 13 chr11 10650905 10650984 -138132488 + (TG)n Simple_repeat Simple_repeat 1 81 0 207 250 26 13 chr11 10650994 10651070 -138132402 + (TATG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr11 10651122 10651146 -138132326 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1183 106 10 60 chr11 10651146 10651345 -138132127 - L1PB2 LINE L1 -11 6140 5952 197 278 67 44 chr11 10652221 10652311 -138131161 + MIR SINE MIR 110 201 -61 * 336 219 105 44 chr11 10652305 10652419 -138131053 - L2 LINE L2 0 3313 3193 1986 109 24 10 chr11 10652751 10653044 -138130428 + AluSx SINE Alu 9 305 -7 2102 131 0 13 chr11 10653044 10653357 -138130115 + AluSg SINE Alu 1 309 -1 451 257 128 57 chr11 10653369 10653735 -138129737 + L2 LINE L2 2024 2415 -899 723 218 0 0 chr11 10653811 10653935 -138129537 - FLAM_C SINE Alu -18 125 2 633 317 71 44 chr11 10653953 10654386 -138129086 + L2 LINE L2 2645 3088 -184 240 280 106 26 chr11 10654389 10654578 -138128894 + L1MC4a LINE L1 4726 4929 -1217 628 126 39 19 chr11 10654864 10654967 -138128505 + FLAM_C SINE Alu 29 133 -10 686 289 117 57 chr11 10655051 10655544 -138127928 + L1MC4a LINE L1 5297 5830 -1978 1299 189 12 114 chr11 10655544 10655690 -138127782 + AluSp SINE Alu 1 96 -217 1937 130 7 4 chr11 10655690 10655967 -138127505 + AluSx SINE Alu 1 278 -34 1299 189 12 114 chr11 10655967 10656154 -138127318 + AluSp SINE Alu 96 300 -13 686 289 117 57 chr11 10656154 10656224 -138127248 + L1MC4a LINE L1 5830 5894 -1914 496 239 43 43 chr11 10656477 10656640 -138126832 + LTR41 LTR ERVL 10 172 -601 1894 126 20 7 chr11 10657112 10657406 -138126066 + L1PA13 LINE L1 5866 6163 0 710 209 0 20 chr11 10657429 10657582 -138125890 + MIR SINE MIR 104 253 -9 222 327 62 18 chr11 10657574 10657622 -138125850 + L3 LINE CR1 1165 1209 -368 * 2205 134 0 0 chr11 10657622 10657921 -138125551 + AluSx SINE Alu 1 299 -13 222 327 62 18 chr11 10657921 10657985 -138125487 + L3 LINE CR1 1209 1282 -295 438 235 17 59 chr11 10658057 10658176 -138125296 - MER81 DNA DNA 0 114 1 190 345 35 17 chr11 10658203 10658319 -138125153 + L3 LINE CR1 1425 1542 -35 676 287 56 3 chr11 10658342 10658564 -138124908 + MIR SINE MIR 20 249 -13 819 225 22 6 chr11 10658609 10658791 -138124681 + MER5A DNA MER1_type 5 189 0 1971 158 19 3 chr11 10659608 10659931 -138123541 + LTR32 LTR ERVL 15 342 -129 1007 128 0 6 chr11 10659990 10660146 -138123326 + LTR32 LTR ERVL 317 471 0 817 180 0 0 chr11 10660717 10660839 -138122633 + FLAM_C SINE Alu 2 123 -20 278 188 165 24 chr11 10661148 10661233 -138122239 + MIR SINE MIR 164 260 -2 639 261 117 51 chr11 10661296 10661553 -138121919 - L1MEd LINE L1 -5509 610 337 334 191 43 21 chr11 10661683 10661714 -138121758 - L1MEd LINE L1 -6001 118 89 333 0 0 0 chr11 10661714 10661751 -138121721 + (TG)n Simple_repeat Simple_repeat 2 38 0 334 191 43 21 chr11 10661751 10661813 -138121659 - L1MEd LINE L1 -6030 89 23 2464 112 6 6 chr11 10662140 10662480 -138120992 + L1PB1 LINE L1 5803 6142 -9 2420 157 8 18 chr11 10662546 10662940 -138120532 + MLT1B LTR MaLR 1 390 0 865 180 0 7 chr11 10663056 10663206 -138120266 + AluJb SINE Alu 140 288 -24 563 77 70 4 chr11 10663206 10663499 -138119973 + (TA)n Simple_repeat Simple_repeat 1 312 0 914 198 6 0 chr11 10663569 10663726 -138119746 + FRAM SINE Alu 1 158 -18 1214 300 31 80 chr11 10664134 10664821 -138118651 + L2 LINE L2 2054 2706 -608 1975 132 7 20 chr11 10664824 10665127 -138118345 - AluSx SINE Alu -13 299 1 403 292 146 10 chr11 10665701 10665893 -138117579 + L2 LINE L2 2836 3053 -219 1095 167 82 26 chr11 10666114 10666459 -138117013 + Charlie5 DNA MER1_type 5 2530 -82 2164 100 7 0 chr11 10666459 10666760 -138116712 - AluSx SINE Alu -9 303 1 426 182 52 0 chr11 10668181 10668258 -138115214 - L1MB7 LINE L1 -56 6128 6048 205 29 59 0 chr11 10669735 10669769 -138113703 + (TA)n Simple_repeat Simple_repeat 2 37 0 561 309 100 9 chr11 10669892 10670112 -138113360 + MIR SINE MIR 20 259 -3 622 228 18 0 chr11 10670117 10670231 -138113241 - FLAM_A SINE Alu -16 117 2 245 277 60 24 chr11 10670259 10670342 -138113130 - MIR SINE MIR -81 127 42 2259 209 8 31 chr11 10670473 10670989 -138112483 - L1ME1 LINE L1 -4 6162 5659 812 144 0 0 chr11 10672104 10672215 -138111257 + AluJ SINE Alu 17 127 -185 2248 67 14 0 chr11 10672315 10672598 -138110874 - L1PA13 LINE L1 -4 6159 5873 1855 170 10 0 chr11 10673068 10673362 -138110110 + AluJb SINE Alu 1 297 -15 1502 173 46 11 chr11 10673369 10673653 -138109819 + AluJo SINE Alu 1 294 -18 4254 260 103 22 chr11 10673713 10674666 -138108806 - L2 LINE L2 -2 3311 2436 2349 184 70 11 chr11 10674666 10675107 -138108365 + LTR24 LTR ERV1 1 467 0 4254 260 103 22 chr11 10675107 10675792 -138107680 - L2 LINE L2 -877 2436 1526 752 218 151 67 chr11 10676425 10676737 -138106735 - MER46C DNA MER2_type 0 338 1 422 252 96 69 chr11 10676883 10677101 -138106371 - MLT1L LTR MaLR -175 440 217 976 164 31 6 chr11 10677112 10677271 -138106201 - MER20 DNA MER1_type -2 217 55 345 255 48 75 chr11 10677296 10677484 -138105988 - MLT1L LTR MaLR -432 183 1 851 226 0 0 chr11 10677526 10677685 -138105787 + AluJ SINE Alu 137 295 -17 240 338 103 15 chr11 10678283 10678419 -138105053 - L2 LINE L2 0 3272 3125 1887 161 0 13 chr11 10678786 10679084 -138104388 + AluJb SINE Alu 3 296 -16 379 209 136 0 chr11 10679086 10679196 -138104276 - MIR SINE MIR -52 210 86 762 157 50 0 chr11 10679337 10679477 -138103995 + L1MB4 LINE L1 6034 6180 0 234 285 87 23 chr11 10679665 10679837 -138103635 - L1ME LINE L1 -292 5829 5647 21 0 0 0 chr11 10680109 10680130 -138103342 + AT_rich Low_complexity Low_complexity 1 21 0 1326 130 10 0 chr11 10680224 10680424 -138103048 + MER68 LTR ERV1 17 218 -344 1266 215 97 35 chr11 10681976 10682316 -138101156 - MLT1A1 LTR MaLR 0 365 5 408 281 54 18 chr11 10682631 10682798 -138100674 - L1ME3A LINE L1 -314 5856 5684 515 276 49 49 chr11 10682802 10683045 -138100427 - L1ME3A LINE L1 -2035 4111 3869 266 327 10 29 chr11 10683075 10683179 -138100293 + LTR16C LTR ERVL 75 176 -315 211 234 0 31 chr11 10684374 10684438 -138099034 + CT-rich Low_complexity Low_complexity 2 63 0 347 149 172 0 chr11 10684995 10685082 -138098390 - L1MC2 LINE L1 -5 6339 6238 245 211 18 0 chr11 10685727 10685784 -138097688 + tRNA-Thr-ACT tRNA tRNA 8 65 -12 231 289 13 26 chr11 10691093 10691169 -138092303 + tRNA-Ala-GCG tRNA tRNA 1 75 0 540 265 141 103 chr11 10692286 10692684 -138090788 + L2 LINE L2 2590 3029 -284 2615 55 0 0 chr11 10692684 10692993 -138090479 - AluY SINE Alu -2 309 1 540 265 141 103 chr11 10692993 10693280 -138090192 + L2 LINE L2 3029 3304 -9 268 167 0 0 chr11 10693468 10693516 -138089956 + FLAM_A SINE Alu 86 133 0 1425 142 36 113 chr11 10693531 10693868 -138089604 + AluJo SINE Alu 2 312 0 193 284 148 23 chr11 10693879 10693967 -138089505 + MIR SINE MIR 153 251 -11 34 0 0 22 chr11 10695921 10695943 -138087529 + AT_rich Low_complexity Low_complexity 1 22 -22 725 180 0 33 chr11 10695943 10696065 -138087407 + FLAM_C SINE Alu 1 118 -15 34 0 0 22 chr11 10696065 10696087 -138087385 + AT_rich Low_complexity Low_complexity 22 44 0 189 0 74 0 chr11 10696198 10696225 -138087247 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2048 131 0 0 chr11 10696225 10696507 -138086965 - AluSx SINE Alu -1 309 2 736 219 65 69 chr11 10697635 10697881 -138085591 + MER112 DNA MER1_type 12 256 -4 197 62 0 31 chr11 10698405 10698437 -138085035 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 493 253 136 32 chr11 10699373 10699594 -138083878 + MIR SINE MIR 11 254 -8 2236 104 0 31 chr11 10699678 10699996 -138083476 + AluSg SINE Alu 1 308 -2 21 0 0 56 chr11 10702801 10702820 -138080652 + AT_rich Low_complexity Low_complexity 1 19 -15 2191 111 7 7 chr11 10702820 10703126 -138080346 + AluSp SINE Alu 1 306 -7 21 0 0 56 chr11 10703126 10703142 -138080330 + AT_rich Low_complexity Low_complexity 19 34 0 2217 109 0 23 chr11 10703485 10703789 -138079683 + AluSx SINE Alu 2 298 -14 2118 131 13 3 chr11 10704352 10704650 -138078822 + AluSx SINE Alu 1 301 -11 220 258 45 0 chr11 10704827 10704916 -138078556 + GA-rich Low_complexity Low_complexity 2 94 0 257 211 195 44 chr11 10705182 10705357 -138078115 + MIR SINE MIR 22 217 -45 1556 70 15 10 chr11 10706805 10707037 -138076435 - AluSp SINE Alu 0 313 95 280 217 121 0 chr11 10707286 10707369 -138076103 - L2 LINE L2 0 3272 3180 2124 134 3 0 chr11 10707437 10707743 -138075729 + AluSx SINE Alu 1 307 -5 791 131 0 0 chr11 10707997 10708104 -138075368 + FLAM_C SINE Alu 2 108 -35 249 231 58 0 chr11 10709281 10709333 -138074139 - L1ME3A LINE L1 -75 6095 6041 360 273 70 31 chr11 10711034 10711050 -138072422 + MIR3 SINE MIR 3 17 -191 1686 163 0 11 chr11 10711050 10711326 -138072146 + AluJo SINE Alu 1 273 -39 360 273 70 31 chr11 10711326 10711437 -138072035 + MIR3 SINE MIR 17 135 -73 23 0 0 0 chr11 10711567 10711590 -138071882 + AT_rich Low_complexity Low_complexity 1 23 0 261 241 193 0 chr11 10712334 10712417 -138071055 + MIR SINE MIR 48 146 -62 1943 130 0 3 chr11 10712460 10712776 -138070696 - AluSx SINE Alu 0 315 1 878 147 0 22 chr11 10712917 10713048 -138070424 + AluJo/FLAM SINE Alu 1 129 -169 2399 72 3 0 chr11 10713048 10713340 -138070132 - AluSp SINE Alu -19 294 2 2267 111 7 0 chr11 10713403 10713729 -138069743 - AluSx SINE Alu 0 332 5 2260 113 7 0 chr11 10714209 10714511 -138068961 + AluSx SINE Alu 1 304 -8 235 303 131 16 chr11 10714908 10715030 -138068442 + L2 LINE L2 3137 3272 0 211 363 81 0 chr11 10716121 10716245 -138067227 - L2 LINE L2 -1739 1575 1442 425 229 93 34 chr11 10716378 10716496 -138066976 - MER5A DNA MER1_type -56 133 9 657 278 18 39 chr11 10716812 10717093 -138066379 - L2 LINE L2 -2900 414 140 2322 99 3 3 chr11 10717461 10717765 -138065707 - AluSx SINE Alu -8 304 1 1579 195 7 0 chr11 10718279 10718571 -138064901 - AluJb SINE Alu -16 296 3 457 193 30 66 chr11 10718852 10718958 -138064514 + L1M4 LINE L1 4395 4494 -1652 2191 122 3 3 chr11 10718958 10719262 -138064210 + AluJb SINE Alu 1 304 -8 457 193 30 66 chr11 10719262 10719321 -138064151 + L1M4 LINE L1 4494 4554 -1592 1697 155 37 0 chr11 10719410 10719713 -138063759 + AluJb SINE Alu 1 313 0 353 349 67 7 chr11 10719805 10719954 -138063518 + MIR SINE MIR 27 184 -78 892 173 28 56 chr11 10720145 10720324 -138063148 + MER69A DNA AcHobo 2 175 -2 2370 77 13 7 chr11 10720357 10720667 -138062805 + AluSx SINE Alu 1 312 0 2103 163 94 25 chr11 10721006 10721443 -138062029 - MLT1C LTR MaLR 0 467 1 192 324 27 0 chr11 10721634 10721708 -138061764 + MIR SINE MIR 15 90 -172 2030 138 26 64 chr11 10721730 10722120 -138061352 + THE1C LTR MaLR 1 375 0 339 268 35 81 chr11 10722140 10722338 -138061134 + MIR SINE MIR 69 257 -5 636 263 129 32 chr11 10722432 10722931 -138060541 + L2 LINE L2 2738 3299 -14 331 307 222 15 chr11 10723664 10723934 -138059538 - L2 LINE L2 -924 2390 2065 338 235 292 25 chr11 10724132 10724375 -138059097 - L2 LINE L2 -1267 2047 1740 1964 107 21 17 chr11 10724674 10724965 -138058507 - AluSp SINE Alu -21 292 1 330 207 200 64 chr11 10727111 10727251 -138056221 + MER5A DNA MER1_type 1 159 -30 1736 132 59 24 chr11 10727368 10727655 -138055817 - AluJb SINE Alu -15 297 1 195 42 0 0 chr11 10728089 10728113 -138055359 + (A)n Simple_repeat Simple_repeat 1 24 0 1968 130 10 10 chr11 10731557 10731858 -138051614 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr11 10732102 10732133 -138051339 + AT_rich Low_complexity Low_complexity 1 31 0 2265 88 3 7 chr11 10734430 10734725 -138048747 - AluSx SINE Alu -18 294 1 771 201 107 12 chr11 10735151 10735320 -138048152 - MER5A DNA MER1_type -1 188 4 825 141 8 31 chr11 10735323 10735451 -138048021 - FLAM_C SINE Alu -7 126 2 243 71 0 143 chr11 10735925 10735981 -138047491 - Alu SINE Alu -170 132 85 235 179 0 75 chr11 10737734 10737801 -138045671 + GA-rich Low_complexity Low_complexity 1 62 0 23 68 0 0 chr11 10739709 10739753 -138043719 + AT_rich Low_complexity Low_complexity 1 44 0 2094 135 0 0 chr11 10740001 10740290 -138043182 - AluSx SINE Alu -21 291 3 21 36 0 0 chr11 10740292 10740320 -138043152 + AT_rich Low_complexity Low_complexity 1 28 0 1482 171 19 15 chr11 10740482 10740745 -138042727 + AluJo SINE Alu 32 295 -17 1771 161 14 0 chr11 10740746 10741026 -138042446 + AluJb SINE Alu 2 285 -27 216 242 0 55 chr11 10741246 10741337 -138042135 + L2 LINE L2 2211 2296 -1018 632 283 115 4 chr11 10741367 10741611 -138041861 + MER102a DNA MER1_type 44 314 -16 604 264 66 0 chr11 10741684 10741851 -138041621 + MIR SINE MIR 37 214 -48 214 387 52 11 chr11 10741962 10742153 -138041319 + L2 LINE L2 2442 2640 -674 2313 108 0 3 chr11 10742213 10742519 -138040953 + AluSg SINE Alu 1 305 -5 1134 174 0 6 chr11 10742585 10742763 -138040709 + MER5B DNA MER1_type 2 178 0 195 337 59 0 chr11 10743136 10743237 -138040235 + L2 LINE L2 2728 2834 -480 518 239 220 62 chr11 10743318 10743577 -138039895 - L2 LINE L2 -775 2539 2240 256 247 21 86 chr11 10743936 10743984 -138039488 - L2 LINE L2 -607 2707 2666 1969 154 7 3 chr11 10743984 10744289 -138039183 + AluJb SINE Alu 5 310 -2 256 247 21 86 chr11 10744289 10744333 -138039139 - L2 LINE L2 -648 2666 2621 2139 278 89 51 chr11 10744494 10745683 -138037789 + L2 LINE L2 2035 3252 -61 1909 168 0 3 chr11 10745709 10746013 -138037459 + AluSx SINE Alu 1 303 -9 274 226 16 0 chr11 10746086 10746148 -138037324 + L2 LINE L2 3251 3313 0 209 293 83 53 chr11 10746146 10746279 -138037193 - MIR SINE MIR -59 203 67 * 1357 173 108 138 chr11 10746384 10746905 -138036567 - MLT1D LTR MaLR 0 505 1 341 259 25 0 chr11 10747041 10747122 -138036350 - L2 LINE L2 0 3272 3190 465 244 0 0 chr11 10747142 10747232 -138036240 + MER94 DNA DNA 45 134 0 2138 117 35 132 chr11 10747556 10747817 -138035655 + Tigger2a DNA MER2_type 1 285 -2423 1963 141 0 54 chr11 10747817 10748130 -138035342 + AluJb SINE Alu 1 296 -16 882 147 0 22 chr11 10748133 10748269 -138035203 - AluJo/FLAM SINE Alu -169 133 1 2138 117 35 132 chr11 10748269 10748482 -138034990 + Tigger2a DNA MER2_type 287 433 -1 189 0 0 0 chr11 10748711 10748732 -138034740 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1920 138 0 7 chr11 10748732 10749014 -138034458 - AluSx SINE Alu -32 280 1 23 101 0 0 chr11 10749016 10749095 -138034377 + AT_rich Low_complexity Low_complexity 1 79 0 1678 107 99 12 chr11 10749101 10749383 -138034089 + AluSx SINE Alu 11 314 0 1694 158 59 33 chr11 10749669 10749973 -138033499 - AluJo SINE Alu 0 312 1 1934 169 36 2 chr11 10750050 10750464 -138033008 + L1 LINE L1 3140 3567 -2579 2460 166 98 35 chr11 10750482 10750972 -138032500 - L1 LINE L1 -2647 3499 3042 432 0 0 0 chr11 10750972 10751020 -138032452 + (TG)n Simple_repeat Simple_repeat 1 48 0 2003 114 4 4 chr11 10751027 10751299 -138032173 - AluSq SINE Alu -41 272 1 2460 166 98 35 chr11 10751299 10751461 -138032011 - L1 LINE L1 -3109 3037 2797 1236 128 190 0 chr11 10751500 10751711 -138031761 + MER21A LTR ERV1 13 263 -668 2702 146 56 79 chr11 10751717 10752286 -138031186 + MER21A LTR ERV1 376 931 0 581 198 63 0 chr11 10752967 10753078 -138030394 + FLAM_C SINE Alu 2 119 -24 842 168 0 0 chr11 10753390 10753515 -138029957 - FLAM_C SINE Alu -8 125 1 221 311 54 14 chr11 10753602 10753676 -138029796 + L2 LINE L2 3229 3305 -8 454 249 305 5 chr11 10753732 10753929 -138029543 - MIR SINE MIR -4 258 3 207 345 64 36 chr11 10754134 10754244 -138029228 - MER91A DNA MER1_type -62 134 22 863 227 0 0 chr11 10754529 10754701 -138028771 - FRAM SINE Alu -1 175 4 198 128 0 0 chr11 10754719 10754758 -138028714 + (A)n Simple_repeat Simple_repeat 1 39 0 1843 211 3 37 chr11 10754766 10755025 -138028447 + MLT1A1 LTR MaLR 1 245 -120 2189 103 10 10 chr11 10755025 10755326 -138028146 - AluSx SINE Alu -11 301 1 1843 211 3 37 chr11 10755326 10755440 -138028032 + MLT1A1 LTR MaLR 245 361 -4 22 0 0 0 chr11 10755521 10755543 -138027929 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 10755732 10755759 -138027713 + (A)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr11 10755935 10755961 -138027511 + AT_rich Low_complexity Low_complexity 1 26 0 605 241 0 35 chr11 10756151 10756292 -138027180 - L2 LINE L2 0 3272 3137 2312 135 21 26 chr11 10757081 10757458 -138026014 - THE1C LTR MaLR 0 375 1 10449 119 26 38 chr11 10757458 10758577 -138024895 - THE1C-int LTR MaLR 0 1580 484 2043 131 0 13 chr11 10758577 10758875 -138024597 - AluSx SINE Alu -18 294 1 10449 119 26 38 chr11 10758875 10759354 -138024118 - THE1C-int LTR MaLR -1096 484 1 2236 135 18 61 chr11 10759354 10759397 -138024075 - THE1C LTR MaLR 0 375 332 2373 82 3 0 chr11 10759397 10759702 -138023770 + AluY SINE Alu 1 306 -5 2236 135 18 61 chr11 10759702 10760050 -138023422 - THE1C LTR MaLR -43 332 1 205 291 81 12 chr11 10760330 10760416 -138023056 + MIR3 SINE MIR 104 195 -13 506 302 132 19 chr11 10760453 10760665 -138022807 - MIR SINE MIR -21 241 6 2583 54 0 0 chr11 10760841 10761139 -138022333 + AluY SINE Alu 1 298 -13 1648 194 14 0 chr11 10761625 10761919 -138021553 - AluJb SINE Alu -8 304 7 1938 125 44 0 chr11 10762221 10762518 -138020954 + AluSq SINE Alu 1 309 0 1606 193 3 10 chr11 10762583 10762717 -138020755 + AluJo SINE Alu 1 134 -178 2186 137 0 0 chr11 10762717 10763017 -138020455 + AluSx SINE Alu 1 300 -12 1606 193 3 10 chr11 10763017 10763187 -138020285 + AluJo SINE Alu 134 303 -9 345 345 79 23 chr11 10763266 10763570 -138019902 + ERVL LTR ERVL 299 619 -5145 2252 96 93 31 chr11 10763655 10764008 -138019464 - THE1C LTR MaLR 0 375 1 2174 200 107 14 chr11 10764030 10764515 -138018957 + MLT1F LTR MaLR 5 534 -8 3395 106 22 22 chr11 10764626 10765119 -138018353 + MER1A DNA MER1_type 37 529 0 343 358 0 6 chr11 10765150 10765323 -138018149 + ERVL LTR ERVL 960 1131 -4633 2024 138 14 0 chr11 10765427 10765723 -138017749 - AluSx SINE Alu -11 301 2 3863 107 24 0 chr11 10765734 10766266 -138017206 - L1PA14 LINE L1 -1 6160 5616 892 188 6 12 chr11 10766339 10766499 -138016973 - FRAM SINE Alu -17 159 1 260 268 134 31 chr11 10767093 10767220 -138016252 + ERVL LTR ERVL 1852 1991 -3663 422 224 31 10 chr11 10767222 10767320 -138016152 + ERVL LTR ERVL 4565 4664 -1100 2625 120 26 0 chr11 10767327 10767711 -138015761 - L1PA14 LINE L1 -91 6070 5677 619 243 78 34 chr11 10767763 10767969 -138015503 + MER58C DNA MER1_type 1 215 0 467 317 65 9 chr11 10767979 10768209 -138015263 + ERVL LTR ERVL 4721 4963 -801 629 154 95 53 chr11 10768401 10768538 -138014934 + L1MD3 LINE L1 7812 7959 -36 2096 109 53 0 chr11 10768538 10768822 -138014650 - AluSx SINE Alu -13 299 1 629 154 95 53 chr11 10768822 10768853 -138014619 + L1MD3 LINE L1 7959 7987 -8 654 183 17 35 chr11 10768854 10768969 -138014503 + FLAM_C SINE Alu 2 114 -29 22 35 0 0 chr11 10768987 10769016 -138014456 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr11 10769184 10769228 -138014244 + AT_rich Low_complexity Low_complexity 1 44 0 869 147 0 0 chr11 10769228 10769344 -138014128 - FLAM_C SINE Alu -15 118 3 23 0 0 0 chr11 10769569 10769592 -138013880 + AT_rich Low_complexity Low_complexity 1 23 0 1906 152 3 0 chr11 10769595 10769891 -138013581 - AluJb SINE Alu -10 302 6 192 200 0 0 chr11 10770001 10770036 -138013436 + MIR SINE MIR 195 229 -33 1586 171 36 43 chr11 10770708 10771013 -138012459 + AluJo SINE Alu 1 303 -9 2170 108 7 0 chr11 10771463 10771749 -138011723 - AluSg SINE Alu -22 288 1 1801 195 142 33 chr11 10771967 10772310 -138011162 + MLT1F1 LTR MaLR 1 411 -156 2519 61 0 0 chr11 10772310 10772607 -138010865 - AluY SINE Alu -14 297 1 1801 195 142 33 chr11 10772607 10772784 -138010688 + MLT1F1 LTR MaLR 411 567 0 384 204 159 0 chr11 10772786 10772899 -138010573 + MIR SINE MIR 117 247 -15 373 250 52 46 chr11 10773023 10773204 -138010268 - MIR SINE MIR -49 213 34 445 276 29 0 chr11 10773224 10773329 -138010143 - L2 LINE L2 -12 3301 3194 24 0 0 0 chr11 10774622 10774646 -138008826 + AT_rich Low_complexity Low_complexity 1 24 0 555 282 219 15 chr11 10775278 10775692 -138007780 + L2 LINE L2 2726 3244 -69 318 341 133 9 chr11 10776066 10776292 -138007180 - MER112 DNA MER1_type -4 256 3 1762 181 7 0 chr11 10776700 10776999 -138006473 - AluJo SINE Alu -11 301 1 1409 192 130 11 chr11 10777008 10777269 -138006203 - AluJo SINE Alu -10 292 1 376 174 257 28 chr11 10777270 10777379 -138006093 - MIR3 SINE MIR -41 167 34 1466 173 36 11 chr11 10777584 10777861 -138005611 + AluJo SINE Alu 11 294 -18 929 190 0 6 chr11 10777934 10778092 -138005380 - AluJb SINE Alu -155 157 1 195 215 65 129 chr11 10779560 10779622 -138003850 + MIR SINE MIR 161 217 -45 2140 113 0 44 chr11 10779622 10779758 -138003714 + AluSx SINE Alu 1 141 -171 1654 125 0 62 chr11 10779758 10780030 -138003442 + AluSx SINE Alu 1 255 -57 2140 113 0 44 chr11 10780030 10780212 -138003260 + AluSx SINE Alu 141 305 -7 195 215 65 129 chr11 10780212 10780242 -138003230 + MIR SINE MIR 217 247 -15 289 329 58 15 chr11 10780410 10780547 -138002925 - MIR SINE MIR -6 256 114 231 328 15 76 chr11 10781443 10781574 -138001898 - L2 LINE L2 -337 2935 2813 1869 310 52 47 chr11 10781817 10783588 -137999884 - Charlie1 DNA MER1_type -236 2525 746 814 165 0 15 chr11 10784330 10784463 -137999009 - MER58A DNA MER1_type 0 167 37 371 296 186 20 chr11 10785664 10785863 -137997609 - MIR SINE MIR -19 243 12 289 259 76 61 chr11 10787247 10787378 -137996094 - MER5A DNA MER1_type 0 189 57 23 33 0 0 chr11 10788381 10788411 -137995061 + AT_rich Low_complexity Low_complexity 1 30 0 2063 61 34 4 chr11 10788611 10788875 -137994597 - L1PA5 LINE L1 -2 6152 5881 1601 162 80 52 chr11 10788997 10789362 -137994110 + THE1C LTR MaLR 1 375 0 777 107 214 0 chr11 10789482 10789613 -137993859 + AluSp SINE Alu 153 311 -2 829 301 44 72 chr11 10789613 10790293 -137993179 + ERVL LTR ERVL 785 1445 -4319 2025 142 7 20 chr11 10791326 10791628 -137991844 - AluJb SINE Alu -14 298 1 796 176 0 0 chr11 10791712 10791843 -137991629 - FLAM_C SINE Alu 0 143 13 226 246 0 0 chr11 10792049 10792114 -137991358 - HAL1 LINE L1 0 2507 2443 341 152 3 5 chr11 10792173 10792247 -137991225 + FLAM SINE Alu 72 131 -2 2732 124 13 52 chr11 10792265 10792726 -137990746 + MER65A LTR ERV1 1 443 -2 1177 132 11 11 chr11 10792950 10793124 -137990348 + AluSg/x SINE Alu 123 296 -14 2338 101 0 0 chr11 10793124 10793420 -137990052 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr11 10793753 10793779 -137989693 + AT_rich Low_complexity Low_complexity 1 26 0 1862 152 0 3 chr11 10793779 10794069 -137989403 - AluSx SINE Alu -23 289 1 203 183 67 50 chr11 10794155 10794215 -137989257 - MIR SINE MIR -98 164 104 181 248 191 57 chr11 10794680 10794821 -137988651 + MIR SINE MIR 56 215 -47 28 61 0 0 chr11 10795172 10795221 -137988251 + AT_rich Low_complexity Low_complexity 1 49 0 671 168 55 45 chr11 10795331 10795363 -137988109 + L1 LINE L1 4614 4644 -1502 2378 100 0 0 chr11 10795363 10795663 -137987809 + AluSc SINE Alu 1 300 -9 671 168 55 45 chr11 10795663 10795962 -137987510 + L1 LINE L1 4644 5202 -944 1404 173 79 11 chr11 10795965 10796231 -137987241 + AluJo SINE Alu 16 299 -13 5231 155 19 28 chr11 10796231 10796890 -137986582 + L1MD1 LINE L1 5279 5928 -314 1650 121 55 8 chr11 10796890 10797146 -137986326 - AluSx SINE Alu -44 268 1 5231 155 19 28 chr11 10797146 10797443 -137986029 + L1MD1 LINE L1 5928 6226 -16 409 201 87 27 chr11 10797502 10797651 -137985821 + L1MC5 LINE L1 7783 7940 -21 22 0 0 0 chr11 10797665 10797687 -137985785 + AT_rich Low_complexity Low_complexity 1 22 0 355 308 100 51 chr11 10797864 10798355 -137985117 + L1M4 LINE L1 4492 5006 -1140 1923 177 99 48 chr11 10798526 10799023 -137984449 + LTR64 LTR ERVK 20 541 -17 1045 171 0 0 chr11 10799068 10799232 -137984240 - AluJb SINE Alu -13 299 136 1035 121 54 0 chr11 10799342 10799491 -137983981 - LTR47A LTR ERVL -295 157 1 495 234 39 19 chr11 10799491 10799645 -137983827 + L1 LINE L1 2771 2927 -3219 539 283 67 87 chr11 10799743 10800132 -137983340 - MLT1I LTR MaLR -13 396 16 510 176 0 0 chr11 10801745 10801830 -137981642 + Charlie1a DNA MER1_type 57 141 -1314 4941 169 60 57 chr11 10801830 10802894 -137980578 + MER11C LTR ERVK 1 1067 -4 593 241 147 75 chr11 10802947 10803267 -137980205 - MLT1A1 LTR MaLR -22 343 1 * 6294 164 52 15 chr11 10803267 10804484 -137978988 + Charlie1a DNA MER1_type 193 1455 0 924 229 233 7 chr11 10805094 10805395 -137978077 + MLT1K LTR MaLR 218 586 -2 2362 89 0 16 chr11 10805666 10805979 -137977493 - AluSc SINE Alu -1 308 1 237 146 0 0 chr11 10806299 10806347 -137977125 + (TG)n Simple_repeat Simple_repeat 2 49 0 555 253 129 0 chr11 10806570 10806740 -137976732 + MIR SINE MIR 1 192 -70 543 239 100 32 chr11 10807032 10807283 -137976189 + L1ME4a LINE L1 5617 5884 -237 1664 169 14 27 chr11 10807288 10807583 -137975889 + AluJo SINE Alu 1 291 -21 25 51 0 0 chr11 10807915 10807954 -137975518 + AT_rich Low_complexity Low_complexity 1 39 0 200 339 0 0 chr11 10807988 10808053 -137975419 + MIR SINE MIR 186 250 -12 526 321 75 0 chr11 10808070 10808282 -137975190 - MIR SINE MIR -22 240 13 333 47 0 0 chr11 10810349 10810392 -137973080 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 301 0 12 chr11 10811223 10811306 -137972166 - MLT1K LTR MaLR -437 151 70 189 80 0 0 chr11 10812501 10812526 -137970946 + MIR SINE MIR 83 107 -101 36 23 0 0 chr11 10812594 10812637 -137970835 + AT_rich Low_complexity Low_complexity 1 43 0 464 281 118 0 chr11 10812754 10812889 -137970583 + MER117 DNA MER1_type 10 160 -37 588 269 70 70 chr11 10812978 10813320 -137970152 - MLT1I LTR MaLR -26 383 42 961 107 5 131 chr11 10813470 10813676 -137969796 + MER4B LTR ERV1 3 182 -428 246 354 15 54 chr11 10813761 10813891 -137969581 - L2 LINE L2 -12 3260 3136 * 501 242 92 172 chr11 10813888 10814617 -137968855 + L2 LINE L2 1226 1881 -1433 6964 73 45 0 chr11 10814617 10815575 -137967897 - L1PA13 LINE L1 -3 6160 5195 501 242 92 172 chr11 10815575 10815688 -137967784 + L2 LINE L2 1881 2001 -1313 204 40 0 0 chr11 10815778 10815803 -137967669 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5001 91 9 36 chr11 10815819 10816519 -137966953 + LTR8 LTR ERV1 1 681 -10 690 304 185 5 chr11 10816593 10817004 -137966468 + L2 LINE L2 2445 2929 -385 1699 210 8 20 chr11 10817130 10817530 -137965942 + L1M4 LINE L1 2380 2774 -3372 1044 131 98 61 chr11 10817531 10817625 -137965847 - LTR47A LTR ERVL 0 452 363 1844 166 3 3 chr11 10817625 10817926 -137965546 - AluJo SINE Alu -11 301 1 1044 131 98 61 chr11 10817926 10818045 -137965427 - LTR47A LTR ERVL -89 363 231 1269 171 72 24 chr11 10818163 10818219 -137965253 - L1M2c LINE L1 -4760 2089 2037 2161 136 0 0 chr11 10818219 10818514 -137964958 - AluSx SINE Alu -17 295 1 1269 171 72 24 chr11 10818514 10818609 -137964863 - L1M2c LINE L1 -4812 2037 1948 2520 48 0 13 chr11 10818609 10818921 -137964551 - AluY SINE Alu -3 308 1 1269 171 72 24 chr11 10818921 10819127 -137964345 - L1M2c LINE L1 -4901 1948 1688 1160 193 60 0 chr11 10819144 10819362 -137964110 - AluJo SINE Alu -27 285 55 1921 137 33 10 chr11 10819400 10819699 -137963773 - AluSx SINE Alu -6 306 1 304 215 93 47 chr11 10819699 10819806 -137963666 - L1ME LINE L1 -5956 114 3 8785 175 29 11 chr11 10819834 10820619 -137962853 - L1PB2 LINE L1 0 6151 5382 1687 166 53 3 chr11 10820619 10820902 -137962570 - AluJb SINE Alu -15 297 1 8785 175 29 11 chr11 10820902 10822850 -137960622 - L1PB2 LINE L1 -769 5382 3374 693 283 109 32 chr11 10822878 10823426 -137960046 - L1M4 LINE L1 -1926 4220 3641 273 180 0 33 chr11 10823500 10823561 -137959911 - MIR SINE MIR -94 168 110 838 146 0 36 chr11 10823861 10823998 -137959474 - FLAM_C SINE Alu -1 132 1 737 237 104 73 chr11 10824063 10824623 -137958849 + LTR50 LTR ERVL 1 462 -61 255 213 20 27 chr11 10824742 10824892 -137958580 + CT-rich Low_complexity Low_complexity 1 149 0 383 307 17 28 chr11 10825153 10825332 -137958140 + CT-rich Low_complexity Low_complexity 1 177 0 363 255 137 116 chr11 10825416 10825978 -137957494 + L1M2 LINE L1 791 1382 -5467 377 245 109 71 chr11 10826316 10826500 -137956972 - MIR SINE MIR -42 220 30 2029 107 4 0 chr11 10826789 10827061 -137956411 + AluSx SINE Alu 1 273 -39 1222 153 149 89 chr11 10827170 10827451 -137956021 - AluJo SINE Alu -4 298 1 213 381 53 59 chr11 10827871 10828228 -137955244 + L2 LINE L2 2866 3220 -52 529 291 27 85 chr11 10828306 10828443 -137955029 + MIR SINE MIR 20 137 -125 1881 108 52 4 chr11 10828443 10828712 -137954760 + AluSq SINE Alu 5 286 -27 529 291 27 85 chr11 10828712 10828832 -137954640 + MIR SINE MIR 137 262 0 207 334 117 20 chr11 10829141 10829304 -137954168 - MIR3 SINE MIR -14 194 2 2071 123 0 7 chr11 10830522 10830815 -137952657 + AluSx SINE Alu 1 291 -21 884 238 33 9 chr11 10830837 10831051 -137952421 - MIR SINE MIR -12 250 32 266 277 117 0 chr11 10831197 10831291 -137952181 - L2 LINE L2 -1 3312 3208 2105 125 3 13 chr11 10832021 10832325 -137951147 + AluSx SINE Alu 1 301 -11 323 137 0 0 chr11 10832473 10832524 -137950948 + Alu SINE Alu 248 298 -2 2746 141 54 21 chr11 10832769 10833181 -137950291 + L1MA9 LINE L1 5815 6247 -65 2177 123 3 0 chr11 10833181 10833483 -137949989 + AluSc SINE Alu 1 303 -6 2746 141 54 21 chr11 10833483 10833552 -137949920 + L1MA9 LINE L1 6247 6312 0 912 313 43 54 chr11 10833584 10834044 -137949428 + MLT1K LTR MaLR 132 586 -2 446 196 9 45 chr11 10834228 10834340 -137949132 + MIR SINE MIR 148 255 -7 277 204 6 204 chr11 10834804 10834895 -137948577 + MIR SINE MIR 20 62 -200 1627 156 52 7 chr11 10834895 10835188 -137948284 - AluJb SINE Alu 0 308 4 277 204 6 204 chr11 10835188 10835271 -137948201 + MIR SINE MIR 62 160 -102 821 267 112 21 chr11 10835295 10835670 -137947802 + MLT1I LTR MaLR 1 409 0 281 347 14 4 chr11 10835816 10835957 -137947515 + L1ME4a LINE L1 5455 5596 -617 581 250 96 35 chr11 10835985 10836377 -137947095 + L1ME4a LINE L1 5689 6119 -2 214 170 43 0 chr11 10836408 10836471 -137947001 + (CAGAGA)n Simple_repeat Simple_repeat 1 65 0 1465 208 36 0 chr11 10836727 10837035 -137946437 + MER33 DNA MER1_type 6 324 0 2598 132 54 12 chr11 10837815 10838224 -137945248 + MSTB LTR MaLR 1 426 0 10065 178 21 2 chr11 10838224 10839844 -137943628 + MSTB-int LTR MaLR 1 1651 0 2302 136 39 13 chr11 10839844 10840233 -137943239 + MSTB LTR MaLR 1 399 -27 1286 161 28 0 chr11 10840259 10840470 -137943002 - AluJo SINE Alu -11 301 85 247 105 79 0 chr11 10840471 10840509 -137942963 + MSTB LTR MaLR 386 426 0 2261 107 10 0 chr11 10840565 10840864 -137942608 + AluSx SINE Alu 1 302 -10 232 171 0 100 chr11 10840871 10840941 -137942531 + L1ME4a LINE L1 5369 5431 -690 877 266 119 16 chr11 10841057 10841436 -137942036 + L1ME4a LINE L1 5493 5910 -211 1935 173 73 67 chr11 10841617 10842033 -137941439 + MLT1D LTR MaLR 24 445 -60 1983 149 10 10 chr11 10842033 10842328 -137941144 + AluJb SINE Alu 1 295 -17 1935 173 73 67 chr11 10842328 10842390 -137941082 + MLT1D LTR MaLR 445 505 0 453 19 0 0 chr11 10843031 10843085 -137940387 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 267 0 12 chr11 10843264 10843350 -137940122 + GA-rich Low_complexity Low_complexity 4 88 0 2454 232 65 65 chr11 10844105 10844880 -137938592 - MER21B LTR ERV1 -70 793 19 448 194 9 83 chr11 10844878 10844986 -137938486 - MER21B LTR ERV1 -757 106 7 * 201 74 0 0 chr11 10845086 10845113 -137938359 + (TC)n Simple_repeat Simple_repeat 1 27 0 279 200 31 15 chr11 10845233 10845298 -137938174 - MLT1K LTR MaLR -342 246 181 945 254 88 3 chr11 10845411 10845694 -137937778 - MER46C DNA MER2_type -22 316 10 590 209 23 25 chr11 10845755 10845902 -137937570 + MER5A DNA MER1_type 4 133 -45 2431 89 0 0 chr11 10846260 10846564 -137936908 + AluSq SINE Alu 1 304 -9 2324 164 42 22 chr11 10847483 10847831 -137935641 + MLT1C LTR MaLR 1 362 -105 3193 122 106 76 chr11 10847831 10848447 -137935025 - MER51A LTR ERV1 0 634 1 2324 164 42 22 chr11 10848447 10848556 -137934916 + MLT1C LTR MaLR 362 467 0 422 329 122 18 chr11 10848861 10849189 -137934283 + L2 LINE L2 2373 2734 -580 253 345 12 12 chr11 10849489 10849573 -137933899 - L2 LINE L2 -22 3291 3208 * 443 308 207 53 chr11 10849560 10849826 -137933646 + L2 LINE L2 2965 3271 -1 729 281 60 50 chr11 10850631 10851194 -137932278 + L1MC4 LINE L1 7317 8016 -26 880 185 11 34 chr11 10851237 10851415 -137932057 + FRAM SINE Alu 1 173 -3 2407 41 45 0 chr11 10852590 10852880 -137930592 + AluY SINE Alu 1 303 -8 2135 132 3 0 chr11 10853508 10853811 -137929661 - AluSg SINE Alu -6 304 1 333 71 0 0 chr11 10854004 10854046 -137929426 + 5S rRNA rRNA 2 43 -78 1886 142 30 48 chr11 10854240 10854538 -137928934 + L1MB3 LINE L1 5846 6139 -32 4229 102 29 46 chr11 10854538 10854895 -137928577 + L1MA5A LINE L1 5616 5964 -333 2414 68 0 40 chr11 10854895 10855219 -137928253 + AluY SINE Alu 1 311 0 4229 102 29 46 chr11 10855219 10855543 -137927929 + L1MA5A LINE L1 5964 6292 -5 1886 142 30 48 chr11 10855543 10855576 -137927896 + L1MB3 LINE L1 6139 6171 0 401 258 67 8 chr11 10856066 10856186 -137927286 - MIR3 SINE MIR -72 136 10 284 244 24 55 chr11 10856420 10856547 -137926925 + GA-rich Low_complexity Low_complexity 3 125 0 217 273 45 0 chr11 10856610 10856676 -137926796 - L2 LINE L2 -4 3309 3241 1711 195 17 0 chr11 10856744 10857046 -137926426 + AluJo SINE Alu 1 307 -5 308 271 0 0 chr11 10857079 10857164 -137926308 + MIR SINE MIR 92 176 -86 486 282 14 21 chr11 10857415 10857557 -137925915 + MER5A DNA MER1_type 28 168 -21 252 247 84 84 chr11 10857580 10857758 -137925714 + L2 LINE L2 2913 3090 -182 842 161 36 12 chr11 10858844 10859012 -137924460 - MER5A DNA MER1_type 0 189 18 2220 169 111 31 chr11 10859612 10859795 -137923677 - MLT1D LTR MaLR 0 505 338 1668 164 45 14 chr11 10859795 10860081 -137923391 - AluJo SINE Alu -17 295 1 2220 169 111 31 chr11 10860081 10860346 -137923126 - MLT1D LTR MaLR -167 338 21 510 280 78 10 chr11 10860587 10860780 -137922692 - L1ME LINE L1 -301 5820 5615 345 179 36 0 chr11 10860830 10860886 -137922586 - MLT1D LTR MaLR -447 58 1 186 274 51 68 chr11 10860887 10861004 -137922468 + MIR SINE MIR 117 231 -31 204 40 0 0 chr11 10861114 10861139 -137922333 + (TG)n Simple_repeat Simple_repeat 1 25 0 458 312 29 29 chr11 10861234 10861404 -137922068 - MER5B DNA MER1_type -2 176 7 387 0 0 0 chr11 10862239 10862282 -137921190 + (CA)n Simple_repeat Simple_repeat 1 43 0 737 301 7 1 chr11 10862294 10862499 -137920973 - MIR SINE MIR -56 206 2 406 211 24 0 chr11 10862830 10862953 -137920519 + CT-rich Low_complexity Low_complexity 2 127 0 244 122 0 61 chr11 10863734 10863783 -137919689 - MIR SINE MIR -57 151 106 1803 214 52 33 chr11 10864097 10864555 -137918917 + MLT1C LTR MaLR 1 467 0 498 311 80 64 chr11 10865151 10865541 -137917931 + MLT1L LTR MaLR 159 586 -29 3123 190 25 11 chr11 10865541 10866099 -137917373 + MLT1F1 LTR MaLR 1 566 -1 498 311 80 64 chr11 10866099 10866122 -137917350 + MLT1L LTR MaLR 586 607 -8 474 115 26 0 chr11 10866661 10866739 -137916733 - L1MA5 LINE L1 -5 6295 6216 274 339 197 0 chr11 10867434 10867561 -137915911 + L2 LINE L2 3112 3263 -9 639 259 7 0 chr11 10869214 10869361 -137914111 + MER5B DNA MER1_type 1 148 -30 234 235 71 35 chr11 10869302 10869387 -137914085 - MER5A DNA MER1_type -90 99 12 * 1448 230 54 48 chr11 10870102 10870580 -137912892 - HAL1 LINE L1 -6 2501 2021 33641 98 15 58 chr11 10870595 10876953 -137906519 - L1PA7 LINE L1 -67 6087 12 801 264 129 25 chr11 10876968 10877331 -137906141 - HAL1 LINE L1 -475 2032 1632 1053 275 62 10 chr11 10877343 10877634 -137905838 - MER45C DNA AcHobo -647 306 1 372 274 119 79 chr11 10877718 10877992 -137905480 + L1M2 LINE L1 4972 5233 -1079 1890 157 7 3 chr11 10877992 10878279 -137905193 + AluJo SINE Alu 1 288 -24 372 274 119 79 chr11 10878279 10878826 -137904646 + L1M2 LINE L1 5233 5825 -487 2017 132 184 11 chr11 10878843 10879207 -137904265 + MSTA LTR MaLR 1 427 -1 2685 121 2 48 chr11 10879210 10879647 -137903825 + MSTA-int LTR MaLR 3 419 -1161 1007 185 0 0 chr11 10879673 10879830 -137903642 + FRAM SINE Alu 1 153 -23 249 246 109 9 chr11 10879836 10879946 -137903526 + L1M4 LINE L1 5249 5369 -777 6945 145 21 29 chr11 10879975 10881138 -137902334 + MSTA-int LTR MaLR 427 1580 0 2092 128 177 11 chr11 10881138 10881505 -137901967 + MSTA LTR MaLR 1 428 0 5419 247 80 26 chr11 10882326 10883922 -137899550 + L1M3c LINE L1 1359 2968 -4528 * 8661 230 85 13 chr11 10883906 10886601 -137896871 + L1M3c LINE L1 2871 5369 -2196 2221 105 0 13 chr11 10886601 10886905 -137896567 + AluSq SINE Alu 1 300 -13 8661 230 85 13 chr11 10886905 10887092 -137896380 + L1M3c LINE L1 5369 5541 -2024 1801 181 0 25 chr11 10887092 10887406 -137896066 + AluJb SINE Alu 1 306 -6 8661 230 85 13 chr11 10887406 10887681 -137895791 + L1M3c LINE L1 5541 5795 -1770 180 0 0 0 chr11 10887681 10887701 -137895771 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8661 230 85 13 chr11 10887701 10887835 -137895637 + L1M3c LINE L1 5795 6591 -974 354 45 0 0 chr11 10888681 10888725 -137894747 + (GA)n Simple_repeat Simple_repeat 1 44 0 1020 210 48 24 chr11 10889389 10889637 -137893835 - MIR SINE MIR -7 255 2 324 250 169 29 chr11 10889644 10889780 -137893692 - MIR3 SINE MIR -31 177 23 517 304 78 11 chr11 10890359 10890550 -137892922 - MIR SINE MIR -10 252 49 225 280 0 0 chr11 10890678 10890728 -137892744 + (CATA)n Simple_repeat Simple_repeat 3 52 0 526 339 38 29 chr11 10890750 10890989 -137892483 - MIR SINE MIR 0 262 22 287 354 23 0 chr11 10891099 10891229 -137892243 + L2 LINE L2 2921 3053 -219 482 185 0 0 chr11 10891371 10891452 -137892020 - LTR40a LTR ERVL -7 512 432 180 338 0 0 chr11 10891474 10891542 -137891930 + L2 LINE L2 3203 3270 -2 613 243 37 0 chr11 10891764 10891900 -137891572 + FLAM_A SINE Alu 1 141 -1 256 250 0 44 chr11 10891903 10891971 -137891501 + G-rich Low_complexity Low_complexity 4 68 0 303 229 98 16 chr11 10892017 10892139 -137891333 - FRAM SINE Alu -29 137 6 26 50 0 0 chr11 10892399 10892439 -137891033 + AT_rich Low_complexity Low_complexity 1 40 0 546 281 25 12 chr11 10892629 10892789 -137890683 - MER20B DNA MER1_type -621 162 1 1837 33 0 24 chr11 10892793 10893006 -137890466 + L1PA3 LINE L1 5948 6155 0 3263 190 52 50 chr11 10893142 10893946 -137889526 - L1MD2 LINE L1 -1 6358 5553 2459 68 0 3 chr11 10893971 10894280 -137889192 - AluY SINE Alu -3 308 1 1402 174 39 12 chr11 10894281 10894539 -137888933 - L1MC/D LINE L1 -425 5817 5553 614 234 30 41 chr11 10894556 10894753 -137888719 - L1MC/D LINE L1 -816 5330 5136 25429 87 8 21 chr11 10894853 10898437 -137885035 - L1P LINE L1 -2004 4142 606 460 209 48 0 chr11 10898438 10898543 -137884929 - L1 LINE L1 -813 5333 5224 270 316 13 0 chr11 10898839 10898918 -137884554 - L2 LINE L2 -217 3055 2976 186 256 0 0 chr11 10899053 10899096 -137884376 + L3 LINE CR1 1112 1154 -423 597 245 92 22 chr11 10899667 10899851 -137883621 + Charlie8 DNA MER1_type 306 502 -1915 27 29 0 0 chr11 10900755 10900789 -137882683 + AT_rich Low_complexity Low_complexity 1 34 0 623 252 124 18 chr11 10902540 10902766 -137880706 + MIR SINE MIR 13 262 0 1945 236 35 27 chr11 10904270 10904757 -137878715 + MLT1D LTR MaLR 1 491 -14 3363 195 75 10 chr11 10905401 10906189 -137877283 - L1MC4 LINE L1 0 8042 7204 1308 159 49 4 chr11 10906190 10906598 -137876874 - LTR54 LTR ERV1 0 510 2 1449 209 62 57 chr11 10906599 10906779 -137876693 - L1MC4 LINE L1 -838 7204 7026 2357 99 10 0 chr11 10906779 10907081 -137876391 - AluSq SINE Alu -8 305 1 1449 209 62 57 chr11 10907081 10907324 -137876148 - L1MC4 LINE L1 -1016 7026 6703 1068 153 45 0 chr11 10907326 10907503 -137875969 + AluJo SINE Alu 1 185 -127 518 88 0 0 chr11 10907509 10907577 -137875895 + AluS SINE Alu 23 90 -222 3183 202 39 14 chr11 10907583 10908281 -137875191 - L1MC4a LINE L1 -1779 6029 5315 619 230 0 43 chr11 10908289 10908428 -137875044 - FLAM_A SINE Alu 0 133 1 2304 82 3 7 chr11 10908477 10908771 -137874701 - AluY SINE Alu -18 293 1 219 279 96 39 chr11 10909514 10909618 -137873854 + L2 LINE L2 3150 3259 -13 583 298 47 62 chr11 10909631 10910052 -137873420 - L2 LINE L2 -40 3232 2806 430 302 95 0 chr11 10910052 10910231 -137873241 + MER91A DNA MER1_type 1 196 0 583 298 47 62 chr11 10910231 10910276 -137873196 - L2 LINE L2 -466 2806 2770 844 185 26 32 chr11 10910276 10910465 -137873007 - MER5A DNA MER1_type 0 189 2 583 298 47 62 chr11 10910465 10910498 -137872974 - L2 LINE L2 -502 2770 2738 198 0 0 0 chr11 10910944 10910966 -137872506 + (TG)n Simple_repeat Simple_repeat 2 23 0 964 85 0 14 chr11 10911226 10911367 -137872105 - MER85 DNA T2_type 0 139 1 250 197 79 13 chr11 10912572 10912648 -137870824 + MIR SINE MIR 105 185 -77 700 232 40 15 chr11 10913344 10913542 -137869930 + L1ME3A LINE L1 3 205 -5914 342 0 0 0 chr11 10913545 10913583 -137869889 + (TG)n Simple_repeat Simple_repeat 2 39 0 383 288 37 42 chr11 10913686 10913877 -137869595 + L1ME3A LINE L1 682 871 -5248 1739 107 37 0 chr11 10914002 10914245 -137869227 - AluSc SINE Alu -57 252 1 530 210 64 13 chr11 10914247 10914404 -137869068 + L1ME3A LINE L1 903 1067 -5052 204 97 0 0 chr11 10914407 10914438 -137869034 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 271 0 0 chr11 10914482 10914530 -137868942 + (TG)n Simple_repeat Simple_repeat 1 48 0 650 311 102 44 chr11 10914538 10915505 -137867967 + L1ME3A LINE L1 1131 1746 -744 2386 94 0 3 chr11 10915512 10915819 -137867653 + AluSx SINE Alu 1 306 -6 1010 276 104 42 chr11 10915914 10916872 -137866600 + L1ME3A LINE L1 2237 3254 -2875 1187 268 136 35 chr11 10917023 10917479 -137865993 - REP3 LTR ERV -47 515 14 1029 140 6 0 chr11 10917479 10917650 -137865822 - L1P LINE L1 -1733 4413 4242 226 174 0 0 chr11 10917647 10917693 -137865779 + L1P LINE L1 4803 4848 -1298 * 538 279 124 21 chr11 10917781 10918201 -137865271 + L1ME3A LINE L1 4742 5204 -925 292 272 95 17 chr11 10918226 10918501 -137864971 + L1ME3A LINE L1 5240 5592 -543 1398 218 122 26 chr11 10918504 10918971 -137864501 - LTR33 LTR ERVL 0 521 10 584 299 26 29 chr11 10918995 10919303 -137864169 + L1ME3A LINE L1 5606 5912 -241 22 0 0 0 chr11 10919442 10919464 -137864008 + AT_rich Low_complexity Low_complexity 1 22 0 239 252 36 18 chr11 10919473 10919584 -137863888 + L1MC4 LINE L1 7929 8041 -1 810 244 119 5 chr11 10919672 10919873 -137863599 - MER58A DNA MER1_type 0 224 1 2275 103 0 31 chr11 10919926 10920247 -137863225 - AluSx SINE Alu -1 311 1 230 211 35 18 chr11 10920707 10920764 -137862708 - MLT1G1 LTR MaLR 0 595 538 222 200 0 20 chr11 10921062 10921112 -137862360 + MIR SINE MIR 192 240 -22 439 200 0 12 chr11 10921151 10921231 -137862241 + AluJ/FLAM SINE Alu 4 82 -230 266 158 73 37 chr11 10921679 10921761 -137861711 + (CTGGGG)n Simple_repeat Simple_repeat 5 89 0 931 218 49 0 chr11 10921942 10922167 -137861305 - MIR SINE MIR -11 251 16 387 252 149 7 chr11 10922194 10922346 -137861126 - MIR3 SINE MIR -31 177 4 880 289 42 60 chr11 10923125 10923627 -137859845 + L3 LINE CR1 822 1314 -263 221 312 38 37 chr11 10923629 10923777 -137859695 + MIR SINE MIR 4 153 -83 1867 232 131 77 chr11 10925139 10926458 -137857014 - L1MC5 LINE L1 -398 7957 6525 598 283 48 54 chr11 10926579 10926915 -137856557 - LTR16C LTR ERVL 0 491 158 1646 266 42 24 chr11 10927175 10927724 -137855748 - L1MC5 LINE L1 -1871 6331 5773 595 276 39 6 chr11 10928013 10928194 -137855278 - MIR SINE MIR -71 191 5 230 335 116 6 chr11 10928772 10928945 -137854527 + MIR SINE MIR 56 247 -15 2791 133 22 27 chr11 10930506 10931105 -137852367 - MER4E LTR ERV1 0 766 1 331 280 75 94 chr11 10931371 10931785 -137851687 - L2 LINE L2 -38 3234 2829 965 203 112 0 chr11 10931950 10932147 -137851325 + MER58A DNA MER1_type 1 219 -5 288 297 102 0 chr11 10932887 10933005 -137850467 - L3 LINE CR1 -268 1309 1180 8330 213 47 38 chr11 10933645 10936133 -137847339 - L1MC5 LINE L1 -1147 5393 2929 2363 92 3 0 chr11 10936133 10936436 -137847036 - AluSq SINE Alu -9 304 1 8330 213 47 38 chr11 10936436 10937311 -137846161 - L1MC5 LINE L1 -3611 2929 2063 798 167 8 0 chr11 10937311 10937443 -137846029 + FLAM_C SINE Alu 1 133 0 8330 213 47 38 chr11 10937443 10937853 -137845619 - L1MC5 LINE L1 -4477 2063 1658 2404 95 0 7 chr11 10937853 10938158 -137845314 - AluY SINE Alu -8 303 1 8330 213 47 38 chr11 10938158 10939069 -137844403 - L1MC5 LINE L1 -4882 1658 664 2507 167 142 2 chr11 10939089 10939539 -137843933 + MLT2B2 LTR ERVL 1 513 -2 2196 209 12 39 chr11 10939540 10940027 -137843445 - L1MC5 LINE L1 -6059 481 8 13639 113 56 37 chr11 10941003 10942123 -137841349 + Tigger1 DNA MER2_type 6 1103 -1315 1786 136 73 3 chr11 10942123 10942453 -137841019 + L1MA5 LINE L1 5948 6300 0 13639 113 56 37 chr11 10942453 10942751 -137840721 + Tigger1 DNA MER2_type 1103 1394 -1024 1522 107 236 8 chr11 10942751 10942993 -137840479 - AluSp SINE Alu -14 299 3 13639 113 56 37 chr11 10942993 10943777 -137839695 + Tigger1 DNA MER2_type 1394 2251 -167 981 182 12 0 chr11 10943814 10943979 -137839493 - FRAM SINE Alu -12 164 1 1288 152 0 5 chr11 10943980 10944177 -137839295 + Tigger1 DNA MER2_type 2221 2416 -2 314 224 95 43 chr11 10944422 10944538 -137838934 + MLT2F LTR ERVL 39 160 -503 1630 180 131 13 chr11 10944888 10945101 -137838371 - MLT1C LTR MaLR -34 415 228 213 108 0 0 chr11 10945101 10945138 -137838334 + (TG)n Simple_repeat Simple_repeat 2 38 0 1630 180 131 13 chr11 10945138 10945312 -137838160 - MLT1C LTR MaLR -221 228 1 199 304 167 11 chr11 10945312 10945588 -137837884 - L2 LINE L2 -988 2326 2008 474 237 106 85 chr11 10947081 10947364 -137836108 - LTR16A LTR ERVL -99 351 63 1317 197 66 71 chr11 10947387 10947767 -137835705 + MLT1B LTR MaLR 2 379 -11 393 39 0 0 chr11 10947857 10947908 -137835564 + (TC)n Simple_repeat Simple_repeat 1 51 0 281 340 10 0 chr11 10948017 10948120 -137835352 - MLT1K LTR MaLR -324 264 161 1782 173 0 23 chr11 10948248 10948549 -137834923 + AluJo SINE Alu 1 294 -18 372 261 147 25 chr11 10948557 10948714 -137834758 + MIR SINE MIR 73 248 -14 279 228 38 0 chr11 10948870 10948949 -137834523 - MIR SINE MIR -120 142 61 229 364 70 7 chr11 10949804 10949947 -137833525 + MIR SINE MIR 18 169 -93 1037 241 24 16 chr11 10950173 10950493 -137832979 + L1ME3 LINE L1 5851 6183 -1 207 245 19 0 chr11 10950530 10950583 -137832889 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1233 153 39 39 chr11 10950732 10950961 -137832511 - MER2 DNA MER2_type -113 232 4 360 0 0 0 chr11 10950964 10951004 -137832468 + (TG)n Simple_repeat Simple_repeat 1 40 0 1296 234 124 30 chr11 10951035 10951509 -137831963 + MLT1F1 LTR MaLR 49 567 0 252 247 118 21 chr11 10951509 10951602 -137831870 + MLT1F-int LTR MaLR 1 102 -1269 6773 151 35 42 chr11 10951633 10952884 -137830588 - Ricksha_b DNA DNA 0 1254 13 806 259 17 44 chr11 10952911 10952983 -137830489 + MLT1F-int LTR MaLR 293 365 -1006 1417 209 23 67 chr11 10952983 10953198 -137830274 - MLT1A2 LTR MaLR -4 370 178 2114 136 13 3 chr11 10953198 10953506 -137829966 - AluJb SINE Alu -1 311 1 1417 209 23 67 chr11 10953506 10953677 -137829795 - MLT1A2 LTR MaLR -196 178 1 806 259 17 44 chr11 10953677 10953898 -137829574 + MLT1F-int LTR MaLR 365 578 -793 713 124 0 0 chr11 10954343 10954448 -137829024 + AluSp/q SINE Alu 207 311 -2 596 282 30 101 chr11 10954559 10954995 -137828477 + MLT1F-int LTR MaLR 961 1365 -6 2237 176 79 30 chr11 10955011 10955506 -137827966 + MLT1F LTR MaLR 24 542 0 2246 90 3 30 chr11 10955994 10956294 -137827178 + AluSg SINE Alu 1 292 -18 236 255 53 21 chr11 10956507 10956601 -137826871 + MIR3 SINE MIR 109 205 -3 2366 167 64 52 chr11 10957112 10957626 -137825846 - MLT2B1 LTR ERVL 0 520 1 235 267 171 0 chr11 10959597 10959702 -137823770 + MIR3 SINE MIR 14 136 -72 32 0 0 0 chr11 10959811 10959843 -137823629 + AT_rich Low_complexity Low_complexity 1 32 0 5114 128 16 37 chr11 10960017 10960114 -137823358 + L1MA9 LINE L1 5428 5526 -786 2079 130 0 17 chr11 10960114 10960413 -137823059 - AluSx SINE Alu -18 294 1 5114 128 16 37 chr11 10960413 10960684 -137822788 + L1MA9 LINE L1 5526 5801 -511 7295 123 38 22 chr11 10960684 10961602 -137821870 - Tigger3b DNA MER2_type -1797 1231 288 2376 96 0 6 chr11 10961602 10961915 -137821557 + AluSx SINE Alu 1 311 -1 7295 123 38 22 chr11 10961915 10962208 -137821264 - Tigger3b DNA MER2_type -2740 288 1 186 103 0 0 chr11 10962211 10962240 -137821232 + (CA)n Simple_repeat Simple_repeat 2 30 0 5114 128 16 37 chr11 10962240 10962486 -137820986 + L1MA9 LINE L1 5803 6053 -259 2506 69 3 0 chr11 10962486 10962790 -137820682 - AluSc SINE Alu -4 305 1 5114 128 16 37 chr11 10962790 10963064 -137820408 + L1MA9 LINE L1 6053 6303 -9 802 287 146 21 chr11 10963149 10963739 -137819733 - L1ME4a LINE L1 -6 6115 5447 305 318 26 20 chr11 10963891 10964042 -137819430 - MIR SINE MIR -51 211 60 306 299 37 9 chr11 10964216 10964323 -137819149 + MIR SINE MIR 19 128 -80 617 211 7 35 chr11 10965386 10965528 -137817944 - L2 LINE L2 -3 3310 3173 458 232 138 0 chr11 10965764 10965902 -137817570 - MIR SINE MIR -29 233 77 288 309 62 31 chr11 10966756 10966950 -137816522 - MIR SINE MIR -56 206 7 2335 161 108 68 chr11 10967211 10967756 -137815716 - MLT1F1 LTR MaLR 0 567 1 192 208 21 0 chr11 10969301 10969349 -137814123 + L2 LINE L2 3265 3313 0 496 160 26 0 chr11 10969506 10969663 -137813809 + CT-rich Low_complexity Low_complexity 1 161 0 5917 120 11 6 chr11 10969712 10971482 -137811990 + L1PA14 LINE L1 4411 6161 0 5687 243 156 24 chr11 10971491 10972810 -137810662 - HAL1 LINE L1 -5 2502 1359 2281 58 24 7 chr11 10972810 10973104 -137810368 - AluY SINE Alu -12 299 1 5687 243 156 24 chr11 10973104 10973899 -137809573 - HAL1 LINE L1 -1148 1359 108 389 280 101 32 chr11 10974295 10974484 -137808988 + MIR SINE MIR 5 206 -56 696 229 124 14 chr11 10974503 10974713 -137808759 + MIR SINE MIR 1 233 -29 684