This directory contains reciprocal-best netted chains for hg38-macNem1.

 - hg38.macNem1.rbest.net.gz: hg38-referenced recip.best net to macNem1.
 - hg38.macNem1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from hg38 to macNem1 through the recip.best net.

 - macNem1.hg38.rbest.net.gz: macNem1-referenced recip.best net.
 - macNem1.hg38.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/hg38.macNem1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
Parent Directory - axtRBestNet/ 2017-02-27 18:07 - md5sum.txt 2017-02-27 14:49 244 hg38.macNem1.rbest.net.gz 2017-02-27 14:49 65M hg38.macNem1.rbest.chain.gz 2017-02-27 14:48 35M macNem1.hg38.rbest.chain.gz 2017-02-27 14:48 35M macNem1.hg38.rbest.net.gz 2017-02-27 14:47 57M