This file is from:
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/multiz44way/maf/README.txt
Fetch this data from:
ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/multiz44way/maf/
or via rsync:
rsync -avz --progress \
rsync://hgdownload.cse.ucsc.edu/goldenPath/hg18/multiz44way/maf/ ./
Please note, the maf.gz files here are 31 Gb compressed data.
They uncompress to 238 Gb of data.
These files contain gap annotations and quality annotations.
There are 38 species with quality annotations.
Genomes with no quality annotations are:
Human/hg18, Mouse/mm9, Frog/xenTro2, Tetraodon/tetNig1, Fugu/fr2
and Zebrafish/danRer5
Listing of these maf files when uncompressed:
-rw-rw-r-- 1 22558800409 Dec 4 14:56 chr2.maf
-rw-rw-r-- 1 20948913417 Dec 4 19:18 chr1.maf
-rw-rw-r-- 1 18791345654 Dec 4 14:16 chr3.maf
-rw-rw-r-- 1 16430114048 Dec 4 23:30 chr5.maf
-rw-rw-r-- 1 16311140129 Dec 4 14:04 chr4.maf
-rw-rw-r-- 1 15757411106 Dec 4 14:01 chr6.maf
-rw-rw-r-- 1 13452354808 Dec 4 13:55 chr7.maf
-rw-rw-r-- 1 12707139537 Dec 4 13:39 chr8.maf
-rw-rw-r-- 1 12166471464 Dec 4 20:05 chr10.maf
-rw-rw-r-- 1 11992322991 Dec 4 13:43 chr11.maf
-rw-rw-r-- 1 11808918482 Dec 4 13:40 chr12.maf
-rw-rw-r-- 1 10577525384 Dec 4 13:29 chr9.maf
-rw-rw-r-- 1 10048415073 Dec 4 13:47 chrX.maf
-rw-rw-r-- 1 8714651453 Dec 4 13:04 chr13.maf
-rw-rw-r-- 1 8331551709 Dec 4 17:30 chr14.maf
-rw-rw-r-- 1 7329198485 Dec 4 13:00 chr15.maf
-rw-rw-r-- 1 7306769575 Dec 4 13:02 chr17.maf
-rw-rw-r-- 1 7052284708 Dec 4 12:53 chr16.maf
-rw-rw-r-- 1 7004199978 Dec 4 12:39 chr18.maf
-rw-rw-r-- 1 5600439876 Dec 4 12:31 chr20.maf
-rw-rw-r-- 1 3475516157 Dec 4 12:50 chr19.maf
-rw-rw-r-- 1 2824712961 Dec 4 11:49 chr21.maf
-rw-rw-r-- 1 2716270988 Dec 4 12:06 chr22.maf
-rw-rw-r-- 1 304230769 Dec 4 11:20 chrY.maf
-rw-rw-r-- 1 105533048 Dec 4 10:40 chr6_cox_hap1.maf
-rw-rw-r-- 1 93123449 Dec 4 10:39 chr6_qbl_hap2.maf
-rw-rw-r-- 1 65926244 Dec 4 10:40 chr6_random.maf
-rw-rw-r-- 1 44090081 Dec 4 10:36 chr17_random.maf
-rw-rw-r-- 1 36840862 Dec 4 10:37 chr5_h2_hap1.maf
-rw-rw-r-- 1 27638870 Dec 4 10:37 chr1_random.maf
-rw-rw-r-- 1 22704103 Dec 4 10:38 chrX_random.maf
-rw-rw-r-- 1 21252240 Dec 4 10:37 chr3_random.maf
-rw-rw-r-- 1 14399909 Dec 4 10:39 chr21_random.maf
-rw-rw-r-- 1 12329431 Dec 4 10:38 chr4_random.maf
-rw-rw-r-- 1 7241098 Dec 4 10:37 chr7_random.maf
-rw-rw-r-- 1 7216970 Dec 4 10:37 chr8_random.maf
-rw-rw-r-- 1 7035942 Dec 4 10:34 chr15_random.maf
-rw-rw-r-- 1 5669947 Dec 4 10:37 chr9_random.maf
-rw-rw-r-- 1 5573175 Dec 4 10:36 chr2_random.maf
-rw-rw-r-- 1 4152732 Dec 4 10:37 chr13_random.maf
-rw-rw-r-- 1 3989700 Dec 4 10:37 chr22_random.maf
-rw-rw-r-- 1 2550081 Dec 4 10:36 chr5_random.maf
-rw-rw-r-- 1 2527814 Dec 4 10:36 chr11_random.maf
-rw-rw-r-- 1 2161466 Dec 4 10:34 chr19_random.maf
-rw-rw-r-- 1 1934303 Dec 4 10:34 chr16_random.maf
-rw-rw-r-- 1 1599856 Dec 4 10:36 chr22_h2_hap1.maf
-rw-rw-r-- 1 1510665 Dec 4 10:35 chrM.maf
-rw-rw-r-- 1 791355 Dec 4 10:36 chr10_random.maf
-rw-rw-r-- 1 288891 Dec 4 10:33 chr18_random.maf
Name Last modified Size Description
Parent Directory -
chr1.maf.gz 2008-12-04 19:18 2.5G
chr1_random.maf.gz 2008-12-04 10:37 3.9M
chr2.maf.gz 2008-12-04 14:56 2.7G
chr2_random.maf.gz 2008-12-04 10:36 751K
chr3.maf.gz 2008-12-04 14:16 2.3G
chr3_random.maf.gz 2008-12-04 10:37 3.1M
chr4.maf.gz 2008-12-04 14:04 2.0G
chr4_random.maf.gz 2008-12-04 10:38 1.8M
chr5.maf.gz 2008-12-04 23:30 2.0G
chr5_h2_hap1.maf.gz 2008-12-04 10:37 5.0M
chr5_random.maf.gz 2008-12-04 10:36 374K
chr6.maf.gz 2008-12-04 14:01 1.9G
chr6_cox_hap1.maf.gz 2008-12-04 10:40 15M
chr6_qbl_hap2.maf.gz 2008-12-04 10:39 13M
chr6_random.maf.gz 2008-12-04 10:40 9.2M
chr7.maf.gz 2008-12-04 13:55 1.6G
chr7_random.maf.gz 2008-12-04 10:37 1.1M
chr8.maf.gz 2008-12-04 13:39 1.5G
chr8_random.maf.gz 2008-12-04 10:37 1.1M
chr9.maf.gz 2008-12-04 13:29 1.3G
chr9_random.maf.gz 2008-12-04 10:37 853K
chr10.maf.gz 2008-12-04 20:05 1.5G
chr10_random.maf.gz 2008-12-04 10:36 127K
chr11.maf.gz 2008-12-04 13:43 1.4G
chr11_random.maf.gz 2008-12-04 10:36 385K
chr12.maf.gz 2008-12-04 13:40 1.4G
chr13.maf.gz 2008-12-04 13:04 1.0G
chr13_random.maf.gz 2008-12-04 10:37 642K
chr14.maf.gz 2008-12-04 17:30 1.0G
chr15.maf.gz 2008-12-04 13:00 892M
chr15_random.maf.gz 2008-12-04 10:34 1.1M
chr16.maf.gz 2008-12-04 12:53 861M
chr16_random.maf.gz 2008-12-04 10:34 273K
chr17.maf.gz 2008-12-04 13:02 883M
chr17_random.maf.gz 2008-12-04 10:36 6.2M
chr18.maf.gz 2008-12-04 12:39 862M
chr18_random.maf.gz 2008-12-04 10:33 48K
chr19.maf.gz 2008-12-04 12:50 421M
chr19_random.maf.gz 2008-12-04 10:34 308K
chr20.maf.gz 2008-12-04 12:31 688M
chr21.maf.gz 2008-12-04 11:49 354M
chr21_random.maf.gz 2008-12-04 10:39 2.3M
chr22.maf.gz 2008-12-04 12:06 335M
chr22_h2_hap1.maf.gz 2008-12-04 10:36 229K
chr22_random.maf.gz 2008-12-04 10:37 617K
chrM.maf.gz 2008-12-04 10:35 257K
chrX.maf.gz 2008-12-04 13:47 1.2G
chrX_random.maf.gz 2008-12-04 10:38 3.2M
chrY.maf.gz 2008-12-04 11:20 43M
md5sum.txt 2009-01-27 13:09 2.4K
upstream1000.maf.gz 2019-10-17 08:11 382M
upstream1000.maf.gz.md5 2019-10-17 08:11 54
upstream2000.maf.gz 2019-10-17 08:40 681M
upstream2000.maf.gz.md5 2019-10-17 08:40 54
upstream5000.maf.gz 2019-10-17 09:30 1.5G
upstream5000.maf.gz.md5 2019-10-17 09:30 54