This directory contains the data files required as input to
the liftOver utility. This tool -- which requires a Linux
platform -- allows the mass conversion of coordinates from
one assembly to another. The executable file for the utility can
be downloaded from http://hgdownload.cse.ucsc.edu/admin/exe/
The file names reflect the assembly conversion data contained within
in the format <db1>To<db2>.over.chain.gz. For example, a file named
hg18Tohg19.zip file contains the liftOver data needed to convert hg18
(Human Build 36) coordinates to hg19 (Human Build GRCh37). If no file is
available for the assembly in which you're interested, please send a
request to the genome mailing list (genome@soe.ucsc.edu) and we will
attempt to provide you with one.
----------------------------------------------------
To download a large file or multiple files from this directory, we recommend
that you use ftp rather than downloading the files via our website. To do so:
ftp hgdownload.cse.ucsc.edu
user name: anonymous
password: <your email address>
go to the directory goldenPath/hg18/liftOver
To download multiple files from the UNIX command line, use the "mget" command.
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Use the "prompt" command to toggle the interactive mode if you do not want
to be prompted for each file that you download.
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Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
Name Last modified Size Description
Parent Directory -
hg18ToAnoCar1.over.chain.gz 18-Feb-2007 11:18 12M
hg18ToBosTau2.over.chain.gz 07-Jan-2006 21:53 83M
hg18ToBosTau3.over.chain.gz 24-Feb-2007 10:15 81M
hg18ToBosTau4.over.chain.gz 11-Mar-2008 20:07 81M
hg18ToBraFlo1.over.chain.gz 26-Mar-2007 17:57 2.4M
hg18ToCalJac1.over.chain.gz 08-Oct-2007 15:06 64M
hg18ToCalJac3.over.chain.gz 10-Jan-2011 15:50 50M
hg18ToCanFam2.over.chain.gz 29-Dec-2005 07:07 89M
hg18ToCavPor3.over.chain.gz 11-Apr-2008 17:01 83M
hg18ToDanRer3.over.chain.gz 23-Dec-2005 11:37 5.9M
hg18ToDanRer4.over.chain.gz 25-Apr-2006 14:33 5.2M
hg18ToDanRer5.over.chain.gz 17-Oct-2007 16:13 6.4M
hg18ToDasNov1.over.chain.gz 07-Jan-2006 14:41 66M
hg18ToEchTel1.over.chain.gz 10-Jan-2006 11:50 55M
hg18ToEquCab1.over.chain.gz 16-Feb-2007 11:33 82M
hg18ToFr1.over.chain.gz 21-Dec-2005 07:36 4.5M
hg18ToFr2.over.chain.gz 24-Jan-2007 20:50 4.2M
hg18ToGalGal2.over.chain.gz 28-Dec-2005 15:18 7.5M
hg18ToGalGal3.over.chain.gz 23-May-2006 10:29 7.5M
hg18ToGasAcu1.over.chain.gz 17-Oct-2006 16:04 4.7M
hg18ToGorGor4.over.chain.gz 23-Jun-2016 16:06 15M
hg18ToHg17.over.chain.gz 03-Apr-2006 10:17 231K
hg18ToHg19.over.chain.gz 26-Jul-2010 11:25 137K
hg18ToHg38.over.chain.gz 19-Feb-2014 16:21 336K
hg18ToLoxAfr1.over.chain.gz 12-Jan-2006 06:56 69M
hg18ToMm7.over.chain.gz 24-Dec-2005 12:33 73M
hg18ToMm8.over.chain.gz 17-Feb-2006 15:44 73M
hg18ToMm9.over.chain.gz 14-Aug-2007 16:49 74M
hg18ToMonDom4.over.chain.gz 16-Feb-2006 17:25 26M
hg18ToOrnAna1.over.chain.gz 04-Apr-2007 19:19 19M
hg18ToOryCun1.over.chain.gz 11-Jan-2006 10:06 68M
hg18ToOryLat2.over.chain.gz 19-Aug-2008 19:56 4.3M
hg18ToPanPan1.over.chain.gz 29-Jul-2016 10:19 14M
hg18ToPanTro1.over.chain.gz 10-Jan-2006 12:36 19M
hg18ToPanTro2.over.chain.gz 15-Jul-2006 15:16 13M
hg18ToPanTro4.over.chain.gz 04-Jun-2013 12:57 13M
hg18ToPetMar1.over.chain.gz 29-Jan-2008 16:57 3.6M
hg18ToPonAbe2.over.chain.gz 03-Oct-2007 15:11 28M
hg18ToRheMac2.over.chain.gz 14-Apr-2006 09:45 39M
hg18ToRn3.over.chain.gz 26-Dec-2005 06:09 71M
hg18ToRn4.over.chain.gz 17-Feb-2006 21:27 70M
hg18ToStrPur2.over.chain.gz 15-Aug-2007 16:20 14M
hg18ToTetNig1.over.chain.gz 07-Jan-2006 07:19 5.2M
hg18ToXenTro1.over.chain.gz 07-Jan-2006 01:37 5.4M
hg18ToXenTro2.over.chain.gz 20-Apr-2006 16:06 6.2M
md5sum.txt 29-Jul-2016 11:20 4.3K