[DIR] Parent Directory

This directory contains data generated by the Stam/Uw lab as part of the ENCODE project. Further information is available in the Uw DGF track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-10-14wgEncodeUwDGFAlignmentsGm06990.tagAlign.gz  1.2G  2010-01-14  dataType=DGF; cell=GM06990; subId=1054; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=Eland (GAPipeline-1.4); view=Alignments; type=tagAlign
      2010-10-14wgEncodeUwDGFHotspotsGm06990.broadPeak.gz  2.8M  2010-01-14  dataType=DGF; cell=GM06990; subId=1054; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=Hotspot-v5.1; view=Hotspots; type=broadPeak; tableName=wgEncodeUwDGFHotspotsGm06990
      2010-10-14wgEncodeUwDGFRawSignalGm06990.wig.gz  317M  2010-01-14  dataType=DGF; cell=GM06990; subId=1054; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=WindowDensity-bin20-win+/-75; view=RawSignal; type=wig; tableName=wgEncodeUwDGFRawSignalGm06990
      2010-10-14wgEncodeUwDGFPeaksGm06990.narrowPeak.gz  1.8M  2010-01-14  dataType=DGF; cell=GM06990; subId=1054; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=lmax-v1.0, FDR 0.5%; view=Peaks; type=narrowPeak; tableName=wgEncodeUwDGFPeaksGm06990
      2010-10-14wgEncodeUwDGFSignalGm06990.bedGraph4.gz  389M  2010-01-14  dataType=DGF; cell=GM06990; subId=1054; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; view=Signal; type=bedGraph; tableName=wgEncodeUwDGFSignalGm06990
      2010-07-02wgEncodeUwDGFAlignmentsHepg2.tagAlign.gz  1.3G  2009-10-02  dataType=DGF; cell=HepG2; subId=632; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=Eland (GAPipeline-1.4); view=Alignments; type=tagAlign
      2010-07-02wgEncodeUwDGFHotspotsHepg2.broadPeak.gz  2.8M  2009-10-02  dataType=DGF; cell=HepG2; subId=632; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=Hotspot-v5.1; view=Hotspots; type=broadPeak; tableName=wgEncodeUwDGFHotspotsHepg2
      2010-07-02wgEncodeUwDGFRawSignalHepg2.wig.gz  336M  2009-10-02  dataType=DGF; cell=HepG2; subId=632; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=WindowDensity-bin20-win+/-75; view=RawSignal; type=wig; tableName=wgEncodeUwDGFRawSignalHepg2
      2010-07-02wgEncodeUwDGFPeaksHepg2.narrowPeak.gz  1.8M  2009-10-02  dataType=DGF; cell=HepG2; subId=632; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=lmax-v1.0, FDR 0.5%; view=Peaks; type=narrowPeak; tableName=wgEncodeUwDGFPeaksHepg2
      2010-07-02wgEncodeUwDGFRawDataHepg2.fastq.gz  7.7G  2009-10-02  dataType=DGF; cell=HepG2; subId=632; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; view=RawData; type=fastq
      2010-07-02wgEncodeUwDGFSignalHepg2.bedGraph4.gz  437M  2009-10-02  dataType=DGF; cell=HepG2; subId=632; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; view=Signal; type=bedGraph; tableName=wgEncodeUwDGFSignalHepg2
      2010-10-13wgEncodeUwDGFAlignmentsK562.tagAlign.gz  1.5G  2010-01-14  dataType=DGF; cell=K562; subId=1027; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=Eland (GAPipeline-1.4); view=Alignments; type=tagAlign
      2010-10-13wgEncodeUwDGFHotspotsK562.broadPeak.gz  3.3M  2010-01-14  dataType=DGF; cell=K562; subId=1027; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=Hotspot-v5.1; view=Hotspots; type=broadPeak; tableName=wgEncodeUwDGFHotspotsK562
      2010-10-13wgEncodeUwDGFRawSignalK562.wig.gz  337M  2010-01-14  dataType=DGF; cell=K562; subId=1027; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=WindowDensity-bin20-win+/-75; view=RawSignal; type=wig; tableName=wgEncodeUwDGFRawSignalK562
      2010-10-13wgEncodeUwDGFPeaksK562.narrowPeak.gz  2.5M  2010-01-14  dataType=DGF; cell=K562; subId=1027; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; labVersion=lmax-v1.0, FDR 0.5%; view=Peaks; type=narrowPeak; tableName=wgEncodeUwDGFPeaksK562
      2010-10-13wgEncodeUwDGFSignalK562.bedGraph4.gz  479M  2010-01-14  dataType=DGF; cell=K562; subId=1027; dataVersion=ENCODE Jan 2010 Freeze; grant=Stam; lab=Uw; view=Signal; type=bedGraph; tableName=wgEncodeUwDGFSignalK562
      2010-07-02wgEncodeUwDGFAlignmentsSknshra.tagAlign.gz  1.2G  2009-10-02  dataType=DGF; cell=SK-N-SH_RA; subId=631; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=Eland (GAPipeline-1.4); view=Alignments; type=tagAlign
      2010-07-02wgEncodeUwDGFHotspotsSknshra.broadPeak.gz  2.3M  2009-10-02  dataType=DGF; cell=SK-N-SH_RA; subId=631; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=Hotspot-v5.1; view=Hotspots; type=broadPeak; tableName=wgEncodeUwDGFHotspotsSknshra
      2010-07-02wgEncodeUwDGFRawSignalSknshra.wig.gz  323M  2009-10-02  dataType=DGF; cell=SK-N-SH_RA; subId=631; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=WindowDensity-bin20-win+/-75; view=RawSignal; type=wig; tableName=wgEncodeUwDGFRawSignalSknshra
      2010-07-02wgEncodeUwDGFPeaksSknshra.narrowPeak.gz  1.7M  2009-10-02  dataType=DGF; cell=SK-N-SH_RA; subId=631; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=lmax-v1.0, FDR 0.5%; view=Peaks; type=narrowPeak; tableName=wgEncodeUwDGFPeaksSknshra
      2010-07-02wgEncodeUwDGFRawDataSknshra.fastq.gz  7.2G  2009-10-02  dataType=DGF; cell=SK-N-SH_RA; subId=631; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; view=RawData; type=fastq
      2010-07-02wgEncodeUwDGFSignalSknshra.bedGraph4.gz  390M  2009-10-02  dataType=DGF; cell=SK-N-SH_RA; subId=631; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; view=Signal; type=bedGraph; tableName=wgEncodeUwDGFSignalSknshra
      2010-07-05wgEncodeUwDGFAlignmentsTh1.tagAlign.gz  1.4G  2009-10-05  dataType=DGF; cell=Th1; subId=637; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=Eland (GAPipeline-1.4); view=Alignments; type=tagAlign
      2010-07-05wgEncodeUwDGFHotspotsTh1.broadPeak.gz  2.4M  2009-10-05  dataType=DGF; cell=Th1; subId=637; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=Hotspot-v5.1; view=Hotspots; type=broadPeak; tableName=wgEncodeUwDGFHotspotsTh1
      2010-07-05wgEncodeUwDGFRawSignalTh1.wig.gz  324M  2009-10-05  dataType=DGF; cell=Th1; subId=637; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=WindowDensity-bin20-win+/-75; view=RawSignal; type=wig; tableName=wgEncodeUwDGFRawSignalTh1
      2010-07-05wgEncodeUwDGFPeaksTh1.narrowPeak.gz  1.6M  2009-10-05  dataType=DGF; cell=Th1; subId=637; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; labVersion=lmax-v1.0, FDR 0.5%; view=Peaks; type=narrowPeak; tableName=wgEncodeUwDGFPeaksTh1
      2010-07-05wgEncodeUwDGFRawDataTh1.fastq.gz  7.8G  2009-10-05  dataType=DGF; cell=Th1; subId=637; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; view=RawData; type=fastq
      2010-07-05wgEncodeUwDGFSignalTh1.bedGraph4.gz  445M  2009-10-05  dataType=DGF; cell=Th1; subId=637; dataVersion=ENCODE Sep 2009 Freeze; grant=Stam; lab=Uw; view=Signal; type=bedGraph; tableName=wgEncodeUwDGFSignalTh1
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