browser position  chr2:234466320-234470428
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE422_chr2_234466320_234466396 Testi" visibility=3 color=255,0,0
chr2	target	racefrag	234466320	234466396	+	.	.	5RACE422_chr2_234466320_234466396
chr2	target	racefrag	234470317	234470428	+	.	.	5RACE422_chr2_234466320_234466396
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE422_chr2_234466320_234466396 Testi" visibility=3 color=20,20,255
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE422_chr2_234466320_234466396 Testi" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE422_chr2_234466320_234466396 Testi" visibility=3 color=20,20,255
chr2	RTPCR_pool31	RTPCRfrag	234466298	234466396	.	.	.	5RACE422_chr2_234466320_234466396
chr2	RTPCR_pool31	RTPCRfrag	234468941	234468967	.	.	.	5RACE422_chr2_234466320_234466396
chr2	RTPCR_pool31	RTPCRfrag	234469010	234469113	.	.	.	5RACE422_chr2_234466320_234466396
chr2	RTPCR_pool31	RTPCRfrag	234470008	234470218	.	.	.	5RACE422_chr2_234466320_234466396
chr2	RTPCR_pool31	RTPCRfrag	234470273	234470410	.	.	.	5RACE422_chr2_234466320_234466396
track name="RACEfragsBrain" description="RACEfrags AC006985.5-5RACE422 Brain" 
track name="RACEfragsPlacenta" description="RACEfrags AC006985.5-5RACE422 Placenta" 
track name="RACEfragsColon" description="RACEfrags AC006985.5-5RACE422 Colon" 
track name="RACEfragsSmall_Intest" description="RACEfrags AC006985.5-5RACE422 Small_Intest" 
track name="RACEfragsHeart" description="RACEfrags AC006985.5-5RACE422 Heart" 
track name="RACEfragsSpleen" description="RACEfrags AC006985.5-5RACE422 Spleen" 
track name="RACEfragsKidney" description="RACEfrags AC006985.5-5RACE422 Kidney" 
track name="RACEfragsStomach" description="RACEfrags AC006985.5-5RACE422 Stomach" 
track name="RACEfragsLung" description="RACEfrags AC006985.5-5RACE422 Lung" 
track name="RACEfragsTesti" description="RACEfrags AC006985.5-5RACE422 Testi" 
chr2	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	234466320	234466396	.	+	.	racefrag_1
chr2	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	234468941	234468967	.	+	.	racefrag_2
chr2	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	234469010	234469093	.	+	.	racefrag_3
chr2	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	234470063	234470098	.	+	.	racefrag_4
chr2	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	234470317	234470410	.	+	.	racefrag_5
track name="RACEfragsMuscle" description="RACEfrags AC006985.5-5RACE422 Muscle" 
track name="RACEfragsLiver" description="RACEfrags AC006985.5-5RACE422 Liver" 
track name="RACEfragsGM06990" description="RACEfrags AC006985.5-5RACE422 GM06990" 
track name="RACEfragsHL60" description="RACEfrags AC006985.5-5RACE422 HL60" 
track name="RACEfragsHeLa" description="RACEfrags AC006985.5-5RACE422 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE422_chr2_234466320_234466396 Testi" visibility=0 color=160,30,200
chr11	exonerate:est2genome	exon	5610259	5610543	.	+	.	5RACE422_chr2_234466320_234466396-20a10.fasta.screen.Contig1
chr11	exonerate:est2genome	exon	5610310	5610543	.	+	.	5RACE422_chr2_234466320_234466396-20e10.fasta.screen.Contig1
chr11	exonerate:est2genome	exon	5602816	5602866	.	+	.	5RACE422_chr2_234466320_234466396-20f10.fasta.screen.Contig1
chr11	exonerate:est2genome	exon	5610061	5610543	.	+	.	5RACE422_chr2_234466320_234466396-20f10.fasta.screen.Contig1
chr11	exonerate:est2genome	exon	5610310	5610543	.	+	.	5RACE422_chr2_234466320_234466396-20g10.fasta.screen.Contig1
chr11	exonerate:est2genome	exon	5610310	5610543	.	+	.	5RACE422_chr2_234466320_234466396-20h10.fasta.screen.Contig1
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20a03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469993	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20a03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20a03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20c03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469991	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20c03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20c03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20d03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469991	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20d03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20d03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20e03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469991	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20e03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20e03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20f03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469991	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20f03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20f03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20g03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20g03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20h03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469991	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20h03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20h03.fasta.screen.Contig1-COR
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE422_chr2_234466320_234466396" visibility=3 color=160,30,100
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20a03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469993	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20a03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20a03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20c03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234469991	234470098	.	+	.	5RACE422_chr2_234466320_234466396-20c03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20c03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234466370	234466403	.	+	.	5RACE422_chr2_234466320_234466396-20g03.fasta.screen.Contig1-COR
chr2	exonerate:est2genome	exon	234470317	234470428	.	+	.	5RACE422_chr2_234466320_234466396-20g03.fasta.screen.Contig1-COR
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE422_chr2_234466320_234466396" visibility=3 color=240,40,200
chr2	Novel_CDS	exon	234466370	234466403	.	+	.	AC006985.5-007
chr2	Novel_CDS	exon	234469993	234470098	.	+	.	AC006985.5-007
chr2	Novel_CDS	exon	234470317	234470428	.	+	.	AC006985.5-007
chr2	Novel_CDS	exon	234466370	234466403	.	+	.	AC006985.5-006
chr2	Novel_CDS	exon	234469991	234470098	.	+	.	AC006985.5-006
chr2	Novel_CDS	exon	234470317	234470428	.	+	.	AC006985.5-006
chr2	Novel_CDS	exon	234466370	234466403	.	+	.	AC006985.5-008
chr2	Novel_CDS	exon	234470317	234470428	.	+	.	AC006985.5-008
