browser position  chr11:5232178-5623600
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE411_chr11_5623571_5623597 Stomach" visibility=3 color=255,0,0
chr11	target	racefrag	5623571	5623597	-	.	.	5RACE411_chr11_5623571_5623597
chr11	target	racefrag	5232178	5232320	-	.	.	5RACE411_chr11_5623571_5623597
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE411_chr11_5623571_5623597 Stomach" visibility=3 color=20,20,255
chr11	RTPCR_pool25	RTPCRfrag	5232207	5232292	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5232459	5232961	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5247390	5247454	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5247617	5247834	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5247878	5247942	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5323634	5323679	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5324118	5324157	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5573101	5573122	.	.	.	5RACE411_chr11_5623571_5623597
chr11	RTPCR_pool25	RTPCRfrag	5623534	5623571	.	.	.	5RACE411_chr11_5623571_5623597
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE411_chr11_5623571_5623597 Stomach" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE411_chr11_5623571_5623597 Stomach" visibility=3 color=20,20,255
track name="RACEfragsBrain" description="RACEfrags AC104389.21-5RACE411 Brain" 
chr11	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232569	.	+	.	racefrag_2
chr11	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	5306185	5306220	.	+	.	racefrag_3
chr11	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	5598528	5598550	.	+	.	racefrag_4
track name="RACEfragsPlacenta" description="RACEfrags AC104389.21-5RACE411 Placenta" 
chr11	5pr_Known_Placenta-3_signal.bed_COR.bed	fragmented_racefrag	5232167	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Placenta-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232625	.	+	.	racefrag_2
chr11	5pr_Known_Placenta-3_signal.bed_COR.bed	fragmented_racefrag	5247369	5247390	.	+	.	racefrag_3
track name="RACEfragsColon" description="RACEfrags AC104389.21-5RACE411 Colon" 
chr11	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232569	.	+	.	racefrag_2
track name="RACEfragsSmall_Intest" description="RACEfrags AC104389.21-5RACE411 Small_Intest" 
chr11	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232569	.	+	.	racefrag_2
track name="RACEfragsHeart" description="RACEfrags AC104389.21-5RACE411 Heart" 
chr11	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232569	.	+	.	racefrag_2
chr11	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	5431097	5431159	.	+	.	racefrag_3
chr11	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	5431196	5431236	.	+	.	racefrag_4
track name="RACEfragsSpleen" description="RACEfrags AC104389.21-5RACE411 Spleen" 
chr11	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232551	.	+	.	racefrag_2
chr11	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	5232586	5232625	.	+	.	racefrag_3
chr11	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	5247271	5247292	.	+	.	racefrag_4
track name="RACEfragsKidney" description="RACEfrags AC104389.21-5RACE411 Kidney" 
track name="RACEfragsStomach" description="RACEfrags AC104389.21-5RACE411 Stomach" 
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232586	.	+	.	racefrag_2
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5232751	5232900	.	+	.	racefrag_3
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5247271	5247292	.	+	.	racefrag_4
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5247369	5247390	.	+	.	racefrag_5
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5247433	5247454	.	+	.	racefrag_6
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5247768	5247814	.	+	.	racefrag_7
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5247899	5247942	.	+	.	racefrag_8
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5623571	5623597	.	+	.	racefrag_9
chr11	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	5643838	5643860	.	+	.	racefrag_10
track name="RACEfragsLung" description="RACEfrags AC104389.21-5RACE411 Lung" 
chr11	5pr_Known_Lung-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Lung-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232632	.	+	.	racefrag_2
chr11	5pr_Known_Lung-3_signal.bed_COR.bed	fragmented_racefrag	5232633	5232665	.	+	.	racefrag_3
chr11	5pr_Known_Lung-3_signal.bed_COR.bed	fragmented_racefrag	5232831	5232974	.	+	.	racefrag_4
chr11	5pr_Known_Lung-3_signal.bed_COR.bed	fragmented_racefrag	5247271	5247292	.	+	.	racefrag_5
track name="RACEfragsTesti" description="RACEfrags AC104389.21-5RACE411 Testi" 
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232320	.	+	.	racefrag_1
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5232321	5232384	.	+	.	racefrag_2
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5232423	5232442	.	+	.	racefrag_3
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5232443	5232632	.	+	.	racefrag_4
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5232633	5232878	.	+	.	racefrag_5
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5232938	5233047	.	+	.	racefrag_6
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5233406	5233427	.	+	.	racefrag_7
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5320630	5320825	.	+	.	racefrag_8
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5320885	5320970	.	+	.	racefrag_9
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5321054	5321114	.	+	.	racefrag_10
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5323588	5323698	.	+	.	racefrag_11
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5418617	5418723	.	+	.	racefrag_12
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5418806	5418827	.	+	.	racefrag_13
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5418870	5418891	.	+	.	racefrag_14
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5418955	5418976	.	+	.	racefrag_15
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5419143	5419185	.	+	.	racefrag_16
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5419405	5419430	.	+	.	racefrag_17
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5419498	5419519	.	+	.	racefrag_18
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5419580	5419607	.	+	.	racefrag_19
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5419726	5419750	.	+	.	racefrag_20
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5419889	5419945	.	+	.	racefrag_21
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5420190	5420255	.	+	.	racefrag_22
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5420354	5420375	.	+	.	racefrag_23
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5420469	5420518	.	+	.	racefrag_24
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5420880	5420910	.	+	.	racefrag_25
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5420991	5421043	.	+	.	racefrag_26
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5421171	5421257	.	+	.	racefrag_27
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5421426	5421447	.	+	.	racefrag_28
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5421489	5421533	.	+	.	racefrag_29
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5421649	5421692	.	+	.	racefrag_30
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5421731	5421763	.	+	.	racefrag_31
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5421801	5421843	.	+	.	racefrag_32
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5422059	5422121	.	+	.	racefrag_33
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5422176	5422259	.	+	.	racefrag_34
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5422414	5422437	.	+	.	racefrag_35
chr11	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	5432896	5432917	.	+	.	racefrag_36
track name="RACEfragsMuscle" description="RACEfrags AC104389.21-5RACE411 Muscle" 
chr11	5pr_Known_Muscle-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Muscle-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232569	.	+	.	racefrag_2
track name="RACEfragsLiver" description="RACEfrags AC104389.21-5RACE411 Liver" 
chr11	5pr_Known_Liver-3_signal.bed_COR.bed	fragmented_racefrag	5232188	5232292	.	+	.	racefrag_1
chr11	5pr_Known_Liver-3_signal.bed_COR.bed	fragmented_racefrag	5232459	5232625	.	+	.	racefrag_2
track name="RACEfragsGM06990" description="RACEfrags AC104389.21-5RACE411 GM06990" 
track name="RACEfragsHL60" description="RACEfrags AC104389.21-5RACE411 HL60" 
track name="RACEfragsHeLa" description="RACEfrags AC104389.21-5RACE411 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE411_chr11_5623571_5623597 Stomach" visibility=0 color=160,30,200
chr11	exonerate:est2genome	exon	5232198	5232320	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5232443	5232971	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5323579	5323705	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5568631	5568829	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5573038	5573156	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5604407	5604660	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5623491	5623595	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5227274	5227396	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5232443	5232971	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5323579	5323705	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5568631	5568829	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5573038	5573156	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5604407	5604660	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5623491	5623588	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE411_chr11_5623571_5623597" visibility=3 color=160,30,100
chr11	exonerate:est2genome	exon	5232198	5232320	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5232443	5232971	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5323579	5323705	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5568631	5568829	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5573038	5573156	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5604407	5604660	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5623491	5623595	.	+	.	5RACE411_chr11_5623571_5623597-2H6-2
chr11	exonerate:est2genome	exon	5227274	5227396	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5232443	5232971	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5323579	5323705	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5568631	5568829	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5573038	5573156	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5604407	5604660	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
chr11	exonerate:est2genome	exon	5623491	5623588	.	+	.	5RACE411_chr11_5623571_5623597-2H6-6
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE411_chr11_5623571_5623597" visibility=3 color=240,40,200
chr11	Known	exon	5623491	5623595	.	-	.	AC104389.21-001
chr11	Known	exon	5604407	5604660	.	-	.	AC104389.21-001
chr11	Known	exon	5573038	5573156	.	-	.	AC104389.21-001
chr11	Known	exon	5568631	5568829	.	-	.	AC104389.21-001
chr11	Known	exon	5323579	5323705	.	-	.	AC104389.21-001
chr11	Known	exon	5232443	5232971	.	-	.	AC104389.21-001
chr11	Known	CDS	5232443	5232534	.	-	0	AC104389.21-001
chr11	Known	start_codon	5232532	5232534	.	-	0	AC104389.21-001
chr11	Known	exon	5232098	5232320	.	-	.	AC104389.21-001
chr11	Known	CDS	5232098	5232320	.	-	1	AC104389.21-001
chr11	Known	exon	5230996	5231211	.	-	.	AC104389.21-001
chr11	Known	CDS	5231086	5231211	.	-	0	AC104389.21-001
chr11	Known	stop_codon	5231083	5231085	.	-	0	AC104389.21-001
