browser position  chr11:5211797-5213197
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE409_chr11_5213134_5213197 Lung" visibility=3 color=255,0,0
chr11	target	racefrag	5213134	5213197	-	.	.	5RACE409_chr11_5213134_5213197
chr11	target	racefrag	5211797	5212019	-	.	.	5RACE409_chr11_5213134_5213197
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE409_chr11_5213134_5213197 Lung" visibility=3 color=20,20,255
chr11	RTPCR_pool2	RTPCRfrag	5211807	5212004	.	.	.	5RACE409_chr11_5213134_5213197
chr11	RTPCR_pool2	RTPCRfrag	5212166	5212320	.	.	.	5RACE409_chr11_5213134_5213197
chr11	RTPCR_pool2	RTPCRfrag	5213037	5213059	.	.	.	5RACE409_chr11_5213134_5213197
chr11	RTPCR_pool2	RTPCRfrag	5213134	5213161	.	.	.	5RACE409_chr11_5213134_5213197
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE409_chr11_5213134_5213197 Lung" visibility=3 color=20,20,255
chr11	oligodT_pool2	RTPCRfrag	5211807	5211929	.	.	.	5RACE409_chr11_5213134_5213197
chr11	oligodT_pool2	RTPCRfrag	5211970	5212004	.	.	.	5RACE409_chr11_5213134_5213197
chr11	oligodT_pool2	RTPCRfrag	5212043	5212257	.	.	.	5RACE409_chr11_5213134_5213197
chr11	oligodT_pool2	RTPCRfrag	5212300	5212454	.	.	.	5RACE409_chr11_5213134_5213197
chr11	oligodT_pool2	RTPCRfrag	5212524	5212682	.	.	.	5RACE409_chr11_5213134_5213197
chr11	oligodT_pool2	RTPCRfrag	5212874	5212895	.	.	.	5RACE409_chr11_5213134_5213197
chr11	oligodT_pool2	RTPCRfrag	5213134	5213161	.	.	.	5RACE409_chr11_5213134_5213197
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE409_chr11_5213134_5213197 Lung" visibility=3 color=20,20,255
track name="RACEfragsBrain" description="RACEfrags AC104389.18-5RACE409 Brain" 
chr11	5pr_Known_Brain-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Brain-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
track name="RACEfragsPlacenta" description="RACEfrags AC104389.18-5RACE409 Placenta" 
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212257	.	+	.	racefrag_2
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5212300	5212341	.	+	.	racefrag_3
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5212380	5212413	.	+	.	racefrag_4
track name="RACEfragsColon" description="RACEfrags AC104389.18-5RACE409 Colon" 
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5220935	5220956	.	+	.	racefrag_3
track name="RACEfragsSmall_Intest" description="RACEfrags AC104389.18-5RACE409 Small_Intest" 
chr11	5pr_Known_Small_Intest-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5211970	.	+	.	racefrag_1
chr11	5pr_Known_Small_Intest-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
track name="RACEfragsHeart" description="RACEfrags AC104389.18-5RACE409 Heart" 
chr11	5pr_Known_Heart-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Heart-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
track name="RACEfragsSpleen" description="RACEfrags AC104389.18-5RACE409 Spleen" 
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5211828	.	+	.	racefrag_1
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5211869	5211893	.	+	.	racefrag_2
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5211928	5211983	.	+	.	racefrag_3
track name="RACEfragsKidney" description="RACEfrags AC104389.18-5RACE409 Kidney" 
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212413	.	+	.	racefrag_2
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5220935	5220977	.	+	.	racefrag_3
track name="RACEfragsStomach" description="RACEfrags AC104389.18-5RACE409 Stomach" 
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212454	.	+	.	racefrag_2
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5220935	5220977	.	+	.	racefrag_3
track name="RACEfragsLung" description="RACEfrags AC104389.18-5RACE409 Lung" 
chr11	5pr_Known_Lung-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Lung-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
chr11	5pr_Known_Lung-4_signal.bed_COR.bed	fragmented_racefrag	5213037	5213059	.	+	.	racefrag_3
chr11	5pr_Known_Lung-4_signal.bed_COR.bed	fragmented_racefrag	5213134	5213197	.	+	.	racefrag_4
track name="RACEfragsTesti" description="RACEfrags AC104389.18-5RACE409 Testi" 
chr11	5pr_Known_Testi-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Testi-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
track name="RACEfragsMuscle" description="RACEfrags AC104389.18-5RACE409 Muscle" 
chr11	5pr_Known_Muscle-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Muscle-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212279	.	+	.	racefrag_2
track name="RACEfragsLiver" description="RACEfrags AC104389.18-5RACE409 Liver" 
chr11	5pr_Known_Liver-4_signal.bed_COR.bed	fragmented_racefrag	5211807	5212004	.	+	.	racefrag_1
chr11	5pr_Known_Liver-4_signal.bed_COR.bed	fragmented_racefrag	5212166	5212454	.	+	.	racefrag_2
chr11	5pr_Known_Liver-4_signal.bed_COR.bed	fragmented_racefrag	5220935	5220956	.	+	.	racefrag_3
track name="RACEfragsGM06990" description="RACEfrags AC104389.18-5RACE409 GM06990" 
chr11	GeCo_5prRACE_Alex_GM06990_pool_4_signal.bed.mod	fragmented_racefrag	5211807	5212019	.	+	.	racefrag_1
chr11	GeCo_5prRACE_Alex_GM06990_pool_4_signal.bed.mod	fragmented_racefrag	5212020	5212024	.	+	.	racefrag_2
chr11	GeCo_5prRACE_Alex_GM06990_pool_4_signal.bed.mod	fragmented_racefrag	5212166	5212257	.	+	.	racefrag_3
track name="RACEfragsHL60" description="RACEfrags AC104389.18-5RACE409 HL60" 
track name="RACEfragsHeLa" description="RACEfrags AC104389.18-5RACE409 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE409_chr11_5213134_5213197 Lung" visibility=0 color=160,30,200
chr11	exonerate:est2genome	exon	5211799	5212019	.	+	.	5RACE409_chr11_5213134_5213197-08244A08
chr11	exonerate:est2genome	exon	5212148	5212336	.	+	.	5RACE409_chr11_5213134_5213197-08244A08
chr11	exonerate:est2genome	exon	5213021	5213176	.	+	.	5RACE409_chr11_5213134_5213197-08244A08
chr11	exonerate:est2genome	exon	5211799	5212019	.	+	.	5RACE409_chr11_5213134_5213197-08244E08
chr11	exonerate:est2genome	exon	5212148	5212336	.	+	.	5RACE409_chr11_5213134_5213197-08244E08
chr11	exonerate:est2genome	exon	5213021	5213176	.	+	.	5RACE409_chr11_5213134_5213197-08244E08
chr11	exonerate:est2genome	exon	5211799	5212019	.	+	.	5RACE409_chr11_5213134_5213197-08244F08
chr11	exonerate:est2genome	exon	5212148	5212336	.	+	.	5RACE409_chr11_5213134_5213197-08244F08
chr11	exonerate:est2genome	exon	5213021	5213176	.	+	.	5RACE409_chr11_5213134_5213197-08244F08
chr11	exonerate:est2genome	exon	5211799	5212019	.	+	.	5RACE409_chr11_5213134_5213197-08244G08
chr11	exonerate:est2genome	exon	5212148	5212336	.	+	.	5RACE409_chr11_5213134_5213197-08244G08
chr11	exonerate:est2genome	exon	5213021	5213167	.	+	.	5RACE409_chr11_5213134_5213197-08244G08
chr11	exonerate:est2genome	exon	5211799	5212019	.	+	.	5RACE409_chr11_5213134_5213197-08244H08
chr11	exonerate:est2genome	exon	5212148	5212336	.	+	.	5RACE409_chr11_5213134_5213197-08244H08
chr11	exonerate:est2genome	exon	5213021	5213176	.	+	.	5RACE409_chr11_5213134_5213197-08244H08
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE409_chr11_5213134_5213197" visibility=3 color=160,30,100
chr11	exonerate:est2genome	exon	5211799	5212019	.	+	.	5RACE409_chr11_5213134_5213197-08244A08
chr11	exonerate:est2genome	exon	5212148	5212336	.	+	.	5RACE409_chr11_5213134_5213197-08244A08
chr11	exonerate:est2genome	exon	5213021	5213176	.	+	.	5RACE409_chr11_5213134_5213197-08244A08
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE409_chr11_5213134_5213197" visibility=3 color=240,40,200
chr11	Known	exon	5213021	5213176	.	-	.	AC104389.18-004
chr11	Known	exon	5212148	5212336	.	-	.	AC104389.18-004
chr11	Known	CDS	5212148	5212239	.	-	0	AC104389.18-004
chr11	Known	start_codon	5212237	5212239	.	-	0	AC104389.18-004
chr11	Known	exon	5211799	5212019	.	-	.	AC104389.18-004
chr11	Known	CDS	5211799	5212019	.	-	1	AC104389.18-004
