browser position  chr11:5204421-5207205
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE408_chr11_5207176_5207199 Stomach" visibility=3 color=255,0,0
chr11	target	racefrag	5207176	5207199	-	.	.	5RACE408_chr11_5207176_5207199
chr11	target	racefrag	5204421	5204629	-	.	.	5RACE408_chr11_5207176_5207199
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE408_chr11_5207176_5207199 Stomach" visibility=3 color=20,20,255
chr11	RTPCR_pool22	RTPCRfrag	5204435	5204590	.	.	.	5RACE408_chr11_5207176_5207199
chr11	RTPCR_pool22	RTPCRfrag	5204800	5204821	.	.	.	5RACE408_chr11_5207176_5207199
chr11	RTPCR_pool22	RTPCRfrag	5207142	5207199	.	.	.	5RACE408_chr11_5207176_5207199
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE408_chr11_5207176_5207199 Stomach" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE408_chr11_5207176_5207199 Stomach" visibility=3 color=20,20,255
track name="RACEfragsBrain" description="RACEfrags AC104389.17-5RACE408 Brain" 
chr11	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204515	.	+	.	racefrag_1
chr11	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	5204845	5204866	.	+	.	racefrag_2
track name="RACEfragsPlacenta" description="RACEfrags AC104389.17-5RACE408 Placenta" 
chr11	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204569	.	+	.	racefrag_1
chr11	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
track name="RACEfragsColon" description="RACEfrags AC104389.17-5RACE408 Colon" 
chr11	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204569	.	+	.	racefrag_1
chr11	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	5204733	5204735	.	+	.	racefrag_2
chr11	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	5204736	5204756	.	+	.	racefrag_3
chr11	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_4
chr11	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	5212145	5212147	.	+	.	racefrag_5
track name="RACEfragsSmall_Intest" description="RACEfrags AC104389.17-5RACE408 Small_Intest" 
chr11	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204515	.	+	.	racefrag_1
chr11	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	5204887	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
chr11	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	5205067	5205088	.	+	.	racefrag_4
track name="RACEfragsHeart" description="RACEfrags AC104389.17-5RACE408 Heart" 
chr11	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204515	.	+	.	racefrag_1
chr11	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	5204845	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
track name="RACEfragsSpleen" description="RACEfrags AC104389.17-5RACE408 Spleen" 
chr11	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204569	.	+	.	racefrag_1
chr11	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	5204733	5204735	.	+	.	racefrag_2
chr11	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	5204736	5204756	.	+	.	racefrag_3
chr11	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_4
chr11	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_5
chr11	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	5212145	5212147	.	+	.	racefrag_6
track name="RACEfragsKidney" description="RACEfrags AC104389.17-5RACE408 Kidney" 
chr11	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204569	.	+	.	racefrag_1
chr11	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	5204722	5204735	.	+	.	racefrag_2
chr11	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	5204736	5204756	.	+	.	racefrag_3
chr11	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_4
chr11	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_5
chr11	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	5212145	5212147	.	+	.	racefrag_6
track name="RACEfragsStomach" description="RACEfrags AC104389.17-5RACE408 Stomach" 
chr11	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204590	.	+	.	racefrag_1
chr11	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	5204629	5204629	.	+	.	racefrag_2
chr11	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	5204630	5204654	.	+	.	racefrag_3
chr11	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_4
chr11	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_5
chr11	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	5207176	5207199	.	+	.	racefrag_6
track name="RACEfragsLung" description="RACEfrags AC104389.17-5RACE408 Lung" 
chr11	5pr_Known_Lung-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204569	.	+	.	racefrag_1
chr11	5pr_Known_Lung-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Lung-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
track name="RACEfragsTesti" description="RACEfrags AC104389.17-5RACE408 Testi" 
chr11	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204569	.	+	.	racefrag_1
chr11	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
track name="RACEfragsMuscle" description="RACEfrags AC104389.17-5RACE408 Muscle" 
chr11	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204515	.	+	.	racefrag_1
chr11	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	5204845	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
track name="RACEfragsLiver" description="RACEfrags AC104389.17-5RACE408 Liver" 
chr11	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	5204414	5204590	.	+	.	racefrag_1
chr11	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	5204800	5204934	.	+	.	racefrag_2
chr11	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	5204996	5205003	.	+	.	racefrag_3
track name="RACEfragsGM06990" description="RACEfrags AC104389.17-5RACE408 GM06990" 
chr11	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	5204414	5204475	.	+	.	racefrag_1
chr11	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	5204514	5204569	.	+	.	racefrag_2
chr11	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	5204821	5204845	.	+	.	racefrag_3
chr11	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	5204905	5204934	.	+	.	racefrag_4
track name="RACEfragsHL60" description="RACEfrags AC104389.17-5RACE408 HL60" 
track name="RACEfragsHeLa" description="RACEfrags AC104389.17-5RACE408 HeLa" 
chr11	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	5204481	5204522	.	+	.	racefrag_1
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE408_chr11_5207176_5207199 Stomach" visibility=0 color=160,30,200
chr11	exonerate:est2genome	exon	5204434	5204605	.	+	.	5RACE408_chr11_5207176_5207199-08250E03
chr11	exonerate:est2genome	exon	5204736	5204845	.	+	.	5RACE408_chr11_5207176_5207199-08250E03
chr11	exonerate:est2genome	exon	5205318	5205385	.	+	.	5RACE408_chr11_5207176_5207199-08250E03
chr11	exonerate:est2genome	exon	5207058	5207201	.	+	.	5RACE408_chr11_5207176_5207199-08250E03
chr11	exonerate:est2genome	exon	5204426	5204605	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
chr11	exonerate:est2genome	exon	5204736	5204845	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
chr11	exonerate:est2genome	exon	5205318	5205385	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
chr11	exonerate:est2genome	exon	5207058	5207201	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE408_chr11_5207176_5207199" visibility=3 color=160,30,100
chr11	exonerate:est2genome	exon	5204426	5204605	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
chr11	exonerate:est2genome	exon	5204736	5204845	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
chr11	exonerate:est2genome	exon	5205318	5205385	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
chr11	exonerate:est2genome	exon	5207058	5207201	.	+	.	5RACE408_chr11_5207176_5207199-08250G03
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE408_chr11_5207176_5207199" visibility=3 color=240,40,200
chr11	Known	exon	5207058	5207201	.	-	.	AC104389.17-004
chr11	Known	exon	5205318	5205385	.	-	.	AC104389.17-004
chr11	Known	exon	5204736	5204845	.	-	.	AC104389.17-004
chr11	Known	CDS	5204736	5204827	.	-	0	AC104389.17-004
chr11	Known	start_codon	5204825	5204827	.	-	0	AC104389.17-004
chr11	Known	exon	5204426	5204605	.	-	.	AC104389.17-004
chr11	Known	CDS	5204429	5204605	.	-	1	AC104389.17-004
chr11	Known	stop_codon	5204426	5204428	.	-	0	AC104389.17-004
