browser position  chr11:5685993-5714911
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE393_chr11_5685993_5686053 Stomach" visibility=3 color=255,0,0
chr11	target	racefrag	5685993	5686053	+	.	.	5RACE393_chr11_5685993_5686053
chr11	target	racefrag	5714323	5714911	+	.	.	5RACE393_chr11_5685993_5686053
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE393_chr11_5685993_5686053 Stomach" visibility=3 color=20,20,255
chr11	RTPCR_pool30	RTPCRfrag	5712010	5712034	.	.	.	5RACE393_chr11_5685993_5686053
chr11	RTPCR_pool30	RTPCRfrag	5714048	5714099	.	.	.	5RACE393_chr11_5685993_5686053
chr11	RTPCR_pool30	RTPCRfrag	5714349	5714613	.	.	.	5RACE393_chr11_5685993_5686053
chr11	RTPCR_pool30	RTPCRfrag	5714721	5714874	.	.	.	5RACE393_chr11_5685993_5686053
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE393_chr11_5685993_5686053 Stomach" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE393_chr11_5685993_5686053 Stomach" visibility=3 color=20,20,255
track name="RACEfragsBrain" description="RACEfrags AC131574.4-5RACE393 Brain" 
track name="RACEfragsPlacenta" description="RACEfrags AC131574.4-5RACE393 Placenta" 
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5685993	5686036	.	+	.	racefrag_1
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5714071	5714099	.	+	.	racefrag_2
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5714349	5714370	.	+	.	racefrag_3
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5714721	5714808	.	+	.	racefrag_4
chr11	5pr_Known_Placenta-4_signal.bed_COR.bed	fragmented_racefrag	5714854	5714895	.	+	.	racefrag_5
track name="RACEfragsColon" description="RACEfrags AC131574.4-5RACE393 Colon" 
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5713880	5713965	.	+	.	racefrag_1
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5714006	5714099	.	+	.	racefrag_2
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5714136	5714322	.	+	.	racefrag_3
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5714323	5714613	.	+	.	racefrag_4
chr11	5pr_Known_Colon-4_signal.bed_COR.bed	fragmented_racefrag	5714721	5714895	.	+	.	racefrag_5
track name="RACEfragsSmall_Intest" description="RACEfrags AC131574.4-5RACE393 Small_Intest" 
track name="RACEfragsHeart" description="RACEfrags AC131574.4-5RACE393 Heart" 
track name="RACEfragsSpleen" description="RACEfrags AC131574.4-5RACE393 Spleen" 
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5713880	5713925	.	+	.	racefrag_1
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5714006	5714099	.	+	.	racefrag_2
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5714236	5714322	.	+	.	racefrag_3
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5714323	5714613	.	+	.	racefrag_4
chr11	5pr_Known_Spleen-4_signal.bed_COR.bed	fragmented_racefrag	5714721	5714895	.	+	.	racefrag_5
track name="RACEfragsKidney" description="RACEfrags AC131574.4-5RACE393 Kidney" 
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5618931	5618971	.	+	.	racefrag_1
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5714523	5714590	.	+	.	racefrag_2
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5714721	5714808	.	+	.	racefrag_3
chr11	5pr_Known_Kidney-4_signal.bed_COR.bed	fragmented_racefrag	5714854	5714895	.	+	.	racefrag_4
track name="RACEfragsStomach" description="RACEfrags AC131574.4-5RACE393 Stomach" 
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5676287	5676309	.	+	.	racefrag_1
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5685993	5686053	.	+	.	racefrag_2
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5713880	5713925	.	+	.	racefrag_3
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5713965	5714197	.	+	.	racefrag_4
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5714236	5714322	.	+	.	racefrag_5
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5714323	5714613	.	+	.	racefrag_6
chr11	5pr_Known_Stomach-4_signal.bed_COR.bed	fragmented_racefrag	5714721	5714895	.	+	.	racefrag_7
track name="RACEfragsLung" description="RACEfrags AC131574.4-5RACE393 Lung" 
track name="RACEfragsTesti" description="RACEfrags AC131574.4-5RACE393 Testi" 
track name="RACEfragsMuscle" description="RACEfrags AC131574.4-5RACE393 Muscle" 
track name="RACEfragsLiver" description="RACEfrags AC131574.4-5RACE393 Liver" 
track name="RACEfragsGM06990" description="RACEfrags AC131574.4-5RACE393 GM06990" 
track name="RACEfragsHL60" description="RACEfrags AC131574.4-5RACE393 HL60" 
track name="RACEfragsHeLa" description="RACEfrags AC131574.4-5RACE393 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE393_chr11_5685993_5686053 Stomach" visibility=0 color=160,30,200
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5711985	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5711988	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5686012	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5711988	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5713802	5714890	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250D12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250D12
chr11	exonerate:est2genome	exon	5711985	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250D12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250D12
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250E12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250E12
chr11	exonerate:est2genome	exon	5711985	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250E12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250E12
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250F12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250F12
chr11	exonerate:est2genome	exon	5711988	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250F12
chr11	exonerate:est2genome	exon	5713802	5713837	.	+	.	5RACE393_chr11_5685993_5686053-08250F12
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250H12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250H12
chr11	exonerate:est2genome	exon	5711985	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250H12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250H12
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE393_chr11_5685993_5686053" visibility=3 color=160,30,100
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5711985	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250A12
chr11	exonerate:est2genome	exon	5686014	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5711988	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5713802	5714895	.	+	.	5RACE393_chr11_5685993_5686053-08250B12
chr11	exonerate:est2genome	exon	5686012	5686079	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5686383	5686409	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5711988	5712041	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
chr11	exonerate:est2genome	exon	5713802	5714890	.	+	.	5RACE393_chr11_5685993_5686053-08250C12
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE393_chr11_5685993_5686053" visibility=3 color=240,40,200
chr11	Known	exon	5686014	5686079	.	+	.	AC131574.4-003
chr11	Known	exon	5686383	5686409	.	+	.	AC131574.4-003
chr11	Known	exon	5711985	5712041	.	+	.	AC131574.4-003
chr11	Known	exon	5713802	5714895	.	+	.	AC131574.4-003
chr11	Known	exon	5686014	5686079	.	+	.	AC131574.4-002
chr11	Known	exon	5686383	5686409	.	+	.	AC131574.4-002
chr11	Known	exon	5711988	5712041	.	+	.	AC131574.4-002
chr11	Known	exon	5713802	5714895	.	+	.	AC131574.4-002
