browser position  chr15:41726839-41747192
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE334_chr15_41747163_41747188 Stomach" visibility=3 color=255,0,0
chr15	target	racefrag	41747163	41747188	-	.	.	5RACE334_chr15_41747163_41747188
chr15	target	racefrag	41726839	41726957	-	.	.	5RACE334_chr15_41747163_41747188
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE334_chr15_41747163_41747188 Stomach" visibility=3 color=20,20,255
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE334_chr15_41747163_41747188 Stomach" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE334_chr15_41747163_41747188 Stomach" visibility=3 color=20,20,255
chr15	RTPCR_pool21	RTPCRfrag	41726847	41726952	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41727049	41727621	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41727659	41727812	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41727969	41728163	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41728349	41728378	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41728560	41728648	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41728688	41728712	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41728759	41728781	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41728955	41728979	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41729218	41729372	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41743147	41743168	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41743922	41744010	.	.	.	5RACE334_chr15_41747163_41747188
chr15	RTPCR_pool21	RTPCRfrag	41747163	41747188	.	.	.	5RACE334_chr15_41747163_41747188
track name="RACEfragsBrain" description="RACEfrags AC011330.3-5RACE334 Brain" 
chr15	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	41727409	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	41729238	41729369	.	+	.	racefrag_3
chr15	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_4
chr15	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	41747525	41747592	.	+	.	racefrag_5
track name="RACEfragsPlacenta" description="RACEfrags AC011330.3-5RACE334 Placenta" 
chr15	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726927	.	+	.	racefrag_1
chr15	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	41727407	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	41729287	41729369	.	+	.	racefrag_3
chr15	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_4
chr15	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	41747571	41747592	.	+	.	racefrag_5
track name="RACEfragsColon" description="RACEfrags AC011330.3-5RACE334 Colon" 
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41727407	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41728238	41728289	.	+	.	racefrag_3
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41728560	41728733	.	+	.	racefrag_4
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41729238	41729369	.	+	.	racefrag_5
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41743922	41744032	.	+	.	racefrag_6
chr15	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	41747525	41747592	.	+	.	racefrag_7
track name="RACEfragsSmall_Intest" description="RACEfrags AC011330.3-5RACE334 Small_Intest" 
chr15	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	41727409	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	41729287	41729369	.	+	.	racefrag_3
chr15	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_4
chr15	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	41747571	41747592	.	+	.	racefrag_5
track name="RACEfragsHeart" description="RACEfrags AC011330.3-5RACE334 Heart" 
chr15	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	41727427	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	41729287	41729369	.	+	.	racefrag_3
chr15	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41743943	.	+	.	racefrag_4
track name="RACEfragsSpleen" description="RACEfrags AC011330.3-5RACE334 Spleen" 
chr15	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	41727427	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	41729287	41729369	.	+	.	racefrag_3
chr15	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_4
chr15	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	41747571	41747592	.	+	.	racefrag_5
track name="RACEfragsKidney" description="RACEfrags AC011330.3-5RACE334 Kidney" 
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726927	.	+	.	racefrag_1
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41727409	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41728759	41728781	.	+	.	racefrag_3
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41728955	41729025	.	+	.	racefrag_4
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41729070	41729091	.	+	.	racefrag_5
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41729175	41729216	.	+	.	racefrag_6
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41729217	41729369	.	+	.	racefrag_7
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_8
chr15	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	41747571	41747592	.	+	.	racefrag_9
track name="RACEfragsStomach" description="RACEfrags AC011330.3-5RACE334 Stomach" 
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726957	.	+	.	racefrag_1
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41727407	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41728119	41728163	.	+	.	racefrag_3
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41728759	41728781	.	+	.	racefrag_4
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41728912	41728979	.	+	.	racefrag_5
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41729218	41729369	.	+	.	racefrag_6
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_7
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41747163	41747188	.	+	.	racefrag_8
chr15	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	41747571	41747592	.	+	.	racefrag_9
track name="RACEfragsLung" description="RACEfrags AC011330.3-5RACE334 Lung" 
chr15	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	41729238	41729369	.	+	.	racefrag_1
chr15	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	41743922	41744032	.	+	.	racefrag_2
chr15	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	41747525	41747592	.	+	.	racefrag_3
chr15	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	41958132	41958179	.	+	.	racefrag_4
track name="RACEfragsTesti" description="RACEfrags AC011330.3-5RACE334 Testi" 
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726927	.	+	.	racefrag_1
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41727427	41727491	.	+	.	racefrag_2
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41727525	41727556	.	+	.	racefrag_3
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41728144	41728203	.	+	.	racefrag_4
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41728238	41728367	.	+	.	racefrag_5
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41729287	41729369	.	+	.	racefrag_6
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_7
chr15	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	41747571	41747592	.	+	.	racefrag_8
track name="RACEfragsMuscle" description="RACEfrags AC011330.3-5RACE334 Muscle" 
chr15	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726927	.	+	.	racefrag_1
chr15	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	41727407	41727556	.	+	.	racefrag_2
chr15	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_3
track name="RACEfragsLiver" description="RACEfrags AC011330.3-5RACE334 Liver" 
chr15	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	41727427	41727553	.	+	.	racefrag_2
chr15	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	41729238	41729349	.	+	.	racefrag_3
chr15	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_4
chr15	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	41747525	41747592	.	+	.	racefrag_5
track name="RACEfragsGM06990" description="RACEfrags AC011330.3-5RACE334 GM06990" 
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41727427	41727449	.	+	.	racefrag_2
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41727486	41727556	.	+	.	racefrag_3
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41729287	41729347	.	+	.	racefrag_4
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41743922	41743943	.	+	.	racefrag_5
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41747525	41747546	.	+	.	racefrag_6
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41921962	41921982	.	+	.	racefrag_7
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41930619	41930682	.	+	.	racefrag_8
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41945872	41945893	.	+	.	racefrag_9
chr15	GeCo_5prRACE_Alex_GM06990_pool_1_signal.bed.mod	fragmented_racefrag	41945935	41945955	.	+	.	racefrag_10
track name="RACEfragsHL60" description="RACEfrags AC011330.3-5RACE334 HL60" 
chr15	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	41726847	41726952	.	+	.	racefrag_1
chr15	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	41727409	41727556	.	+	.	racefrag_2
chr15	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	41729238	41729369	.	+	.	racefrag_3
chr15	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	41743922	41744010	.	+	.	racefrag_4
chr15	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	41747525	41747592	.	+	.	racefrag_5
track name="RACEfragsHeLa" description="RACEfrags AC011330.3-5RACE334 HeLa" 
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41726835	41726914	.	+	.	racefrag_1
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41727415	41727436	.	+	.	racefrag_2
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41727474	41727540	.	+	.	racefrag_3
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41729226	41729359	.	+	.	racefrag_4
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41743910	41743997	.	+	.	racefrag_5
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41747513	41747517	.	+	.	racefrag_6
chr15	5pr_Known_HeLa-1_signal.bed.mod	fragmented_racefrag	41747518	41747579	.	+	.	racefrag_7
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE334_chr15_41747163_41747188 Stomach" visibility=0 color=160,30,200
chrX	exonerate:est2genome	exon	153102587	153102672	.	+	.	5RACE334_chr15_41747163_41747188-17c04.fasta.screen.Contig1
chrX	exonerate:est2genome	exon	153102769	153102943	.	+	.	5RACE334_chr15_41747163_41747188-17c04.fasta.screen.Contig1
chr2	exonerate:est2genome	exon	220125479	220125592	.	+	.	5RACE334_chr15_41747163_41747188-17e04.fasta.screen.Contig1
chr2	exonerate:est2genome	exon	220134880	220134906	.	+	.	5RACE334_chr15_41747163_41747188-17e04.fasta.screen.Contig1
chr2	exonerate:est2genome	exon	220134195	220134286	.	+	.	5RACE334_chr15_41747163_41747188-17f04.fasta.screen.Contig1
chr2	exonerate:est2genome	exon	220134880	220134906	.	+	.	5RACE334_chr15_41747163_41747188-17f04.fasta.screen.Contig1
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17a09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17a09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17a09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17b09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17b09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17b09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17c09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17c09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17c09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17d09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17d09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17d09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17f09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17f09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17f09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17g09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17g09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17g09.fasta.screen.Contig1-COR
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE334_chr15_41747163_41747188" visibility=3 color=160,30,100
chr15	exonerate:est2genome	exon	41726839	41726957	.	+	.	5RACE334_chr15_41747163_41747188-17a09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41743908	41744033	.	+	.	5RACE334_chr15_41747163_41747188-17a09.fasta.screen.Contig1-COR
chr15	exonerate:est2genome	exon	41747148	41747192	.	+	.	5RACE334_chr15_41747163_41747188-17a09.fasta.screen.Contig1-COR
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE334_chr15_41747163_41747188" visibility=3 color=240,40,200
chr15	Known	exon	41747148	41747192	.	-	.	AC011330.3-012
chr15	Known	exon	41743908	41744033	.	-	.	AC011330.3-012
chr15	Known	exon	41726839	41726957	.	-	.	AC011330.3-012
