browser position  chr5:56278601-56303263
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE323_chr5_56303234_56303255 Testi" visibility=3 color=255,0,0
chr5	target	racefrag	56303234	56303255	-	.	.	5RACE323_chr5_56303234_56303255
chr5	target	racefrag	56278601	56278670	-	.	.	5RACE323_chr5_56303234_56303255
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE323_chr5_56303234_56303255 Testi" visibility=3 color=20,20,255
chr5	RTPCR_pool34	RTPCRfrag	56278608	56278651	.	.	.	5RACE323_chr5_56303234_56303255
chr5	RTPCR_pool34	RTPCRfrag	56290979	56291141	.	.	.	5RACE323_chr5_56303234_56303255
chr5	RTPCR_pool34	RTPCRfrag	56303234	56303255	.	.	.	5RACE323_chr5_56303234_56303255
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE323_chr5_56303234_56303255 Testi" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE323_chr5_56303234_56303255 Testi" visibility=3 color=20,20,255
track name="RACEfragsBrain" description="RACEfrags AC008937.5-5RACE323 Brain" 
chr5	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278651	.	+	.	racefrag_1
chr5	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	56283684	56283724	.	+	.	racefrag_2
track name="RACEfragsPlacenta" description="RACEfrags AC008937.5-5RACE323 Placenta" 
chr5	5pr_Known_Placenta-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278651	.	+	.	racefrag_1
chr5	5pr_Known_Placenta-3_signal.bed_COR.bed	fragmented_racefrag	56279654	56279675	.	+	.	racefrag_2
chr5	5pr_Known_Placenta-3_signal.bed_COR.bed	fragmented_racefrag	56283684	56283724	.	+	.	racefrag_3
track name="RACEfragsColon" description="RACEfrags AC008937.5-5RACE323 Colon" 
chr5	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278670	.	+	.	racefrag_1
chr5	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	56278671	56278689	.	+	.	racefrag_2
chr5	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	56282212	56282221	.	+	.	racefrag_3
chr5	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	56283684	56283724	.	+	.	racefrag_4
track name="RACEfragsSmall_Intest" description="RACEfrags AC008937.5-5RACE323 Small_Intest" 
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56278631	56278670	.	+	.	racefrag_1
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56278671	56278689	.	+	.	racefrag_2
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56278809	56278857	.	+	.	racefrag_3
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56278923	56279007	.	+	.	racefrag_4
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56279051	56279123	.	+	.	racefrag_5
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56279173	56279195	.	+	.	racefrag_6
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56279239	56279384	.	+	.	racefrag_7
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56279467	56279490	.	+	.	racefrag_8
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56279553	56279574	.	+	.	racefrag_9
chr5	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	56279654	56279737	.	+	.	racefrag_10
track name="RACEfragsHeart" description="RACEfrags AC008937.5-5RACE323 Heart" 
chr5	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278651	.	+	.	racefrag_1
track name="RACEfragsSpleen" description="RACEfrags AC008937.5-5RACE323 Spleen" 
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278670	.	+	.	racefrag_1
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56278671	56278689	.	+	.	racefrag_2
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56278809	56278857	.	+	.	racefrag_3
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56278923	56279007	.	+	.	racefrag_4
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56279051	56279195	.	+	.	racefrag_5
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56279239	56279384	.	+	.	racefrag_6
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56279467	56279490	.	+	.	racefrag_7
chr5	5pr_Known_Spleen-3_signal.bed_COR.bed	fragmented_racefrag	56282212	56282221	.	+	.	racefrag_8
track name="RACEfragsKidney" description="RACEfrags AC008937.5-5RACE323 Kidney" 
chr5	5pr_Known_Kidney-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278651	.	+	.	racefrag_1
track name="RACEfragsStomach" description="RACEfrags AC008937.5-5RACE323 Stomach" 
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278670	.	+	.	racefrag_1
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56278671	56278768	.	+	.	racefrag_2
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56278809	56279195	.	+	.	racefrag_3
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56279239	56279384	.	+	.	racefrag_4
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56279467	56279504	.	+	.	racefrag_5
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56279553	56279574	.	+	.	racefrag_6
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56279654	56279759	.	+	.	racefrag_7
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56279850	56279873	.	+	.	racefrag_8
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56279915	56279936	.	+	.	racefrag_9
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56280312	56280432	.	+	.	racefrag_10
chr5	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	56280962	56280989	.	+	.	racefrag_11
track name="RACEfragsLung" description="RACEfrags AC008937.5-5RACE323 Lung" 
track name="RACEfragsTesti" description="RACEfrags AC008937.5-5RACE323 Testi" 
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56278608	56278670	.	+	.	racefrag_1
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56278671	56278744	.	+	.	racefrag_2
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56278809	56278885	.	+	.	racefrag_3
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56278923	56279384	.	+	.	racefrag_4
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56279450	56279574	.	+	.	racefrag_5
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56279654	56279804	.	+	.	racefrag_6
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56279850	56279873	.	+	.	racefrag_7
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56282212	56282236	.	+	.	racefrag_8
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56282237	56282287	.	+	.	racefrag_9
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56282331	56282624	.	+	.	racefrag_10
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56282683	56282743	.	+	.	racefrag_11
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56283114	56283187	.	+	.	racefrag_12
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56283656	56283677	.	+	.	racefrag_13
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56283678	56283743	.	+	.	racefrag_14
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56290979	56291090	.	+	.	racefrag_15
chr5	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	56303234	56303255	.	+	.	racefrag_16
track name="RACEfragsMuscle" description="RACEfrags AC008937.5-5RACE323 Muscle" 
chr5	5pr_Known_Muscle-2_signal.bed_COR.bed	fragmented_racefrag	56278608	56278651	.	+	.	racefrag_1
chr5	5pr_Known_Muscle-2_signal.bed_COR.bed	fragmented_racefrag	56282212	56282221	.	+	.	racefrag_2
track name="RACEfragsLiver" description="RACEfrags AC008937.5-5RACE323 Liver" 
track name="RACEfragsGM06990" description="RACEfrags AC008937.5-5RACE323 GM06990" 
chr5	GeCo_5prRACE_Alex_GM06990_pool_3_signal.bed.mod	fragmented_racefrag	56278608	56278651	.	+	.	racefrag_1
track name="RACEfragsHL60" description="RACEfrags AC008937.5-5RACE323 HL60" 
chr5	GeCo_5prRACE_Alex_HL60_pool_3_signal.bed.mod	fragmented_racefrag	56278631	56278651	.	+	.	racefrag_1
track name="RACEfragsHeLa" description="RACEfrags AC008937.5-5RACE323 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE323_chr5_56303234_56303255 Testi" visibility=0 color=160,30,200
chr5	exonerate:est2genome	exon	56278625	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256A03
chr5	exonerate:est2genome	exon	56282212	56282236	.	+	.	5RACE323_chr5_56303234_56303255-08256A03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256A03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256A03
chr5	exonerate:est2genome	exon	56278615	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256B03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256B03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256B03
chr5	exonerate:est2genome	exon	56278615	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56282212	56282236	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56278616	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256F03
chr5	exonerate:est2genome	exon	56282212	56282236	.	+	.	5RACE323_chr5_56303234_56303255-08256F03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256F03
chr5	exonerate:est2genome	exon	56278615	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256G03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256G03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256G03
chr5	exonerate:est2genome	exon	56278615	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256H03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256H03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256H03
chr5	exonerate:est2genome	exon	56278615	56278660	.	+	.	5RACE323_chr5_56303234_56303255-08256G02-COR
chr5	exonerate:est2genome	exon	56290974	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256G02-COR
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256G02-COR
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE323_chr5_56303234_56303255" visibility=3 color=160,30,100
chr5	exonerate:est2genome	exon	56278615	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256B03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256B03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256B03
chr5	exonerate:est2genome	exon	56278615	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56282212	56282236	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56290970	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256D03
chr5	exonerate:est2genome	exon	56278616	56278655	.	+	.	5RACE323_chr5_56303234_56303255-08256F03
chr5	exonerate:est2genome	exon	56282212	56282236	.	+	.	5RACE323_chr5_56303234_56303255-08256F03
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256F03
chr5	exonerate:est2genome	exon	56278615	56278660	.	+	.	5RACE323_chr5_56303234_56303255-08256G02-COR
chr5	exonerate:est2genome	exon	56290974	56291104	.	+	.	5RACE323_chr5_56303234_56303255-08256G02-COR
chr5	exonerate:est2genome	exon	56303217	56303259	.	+	.	5RACE323_chr5_56303234_56303255-08256G02-COR
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE323_chr5_56303234_56303255" visibility=3 color=240,40,200
chr5	Known	exon	56303217	56303259	.	-	.	AC008937.5-011
chr5	Known	exon	56290970	56291104	.	-	.	AC008937.5-011
chr5	Known	exon	56278615	56278655	.	-	.	AC008937.5-011
chr5	Known	exon	56303217	56303259	.	-	.	AC008937.5-009
chr5	Known	exon	56290970	56291104	.	-	.	AC008937.5-009
chr5	Known	exon	56282212	56282236	.	-	.	AC008937.5-009
chr5	Known	exon	56278615	56278655	.	-	.	AC008937.5-009
chr5	Known	exon	56303217	56303259	.	-	.	AC008937.5-010
chr5	Known	exon	56282212	56282236	.	-	.	AC008937.5-010
chr5	Known	exon	56278615	56278655	.	-	.	AC008937.5-010
