browser position  chr16:258721-272109
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE239_chr16_258721_258773 Stomach" visibility=3 color=255,0,0
chr16	target	racefrag	258721	258773	+	.	.	5RACE239_chr16_258721_258773
chr16	target	racefrag	272049	272109	+	.	.	5RACE239_chr16_258721_258773
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE239_chr16_258721_258773 Stomach" visibility=3 color=20,20,255
chr16	RTPCR_pool32	RTPCRfrag	258740	258793	.	.	.	5RACE239_chr16_258721_258773
chr16	RTPCR_pool32	RTPCRfrag	258837	258944	.	.	.	5RACE239_chr16_258721_258773
chr16	RTPCR_pool32	RTPCRfrag	271795	271917	.	.	.	5RACE239_chr16_258721_258773
chr16	RTPCR_pool32	RTPCRfrag	272041	272080	.	.	.	5RACE239_chr16_258721_258773
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE239_chr16_258721_258773 Stomach" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE239_chr16_258721_258773 Stomach" visibility=3 color=20,20,255
track name="RACEfragsBrain" description="RACEfrags LA16c-314G4.1-5RACE239 Brain" 
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	258898	258991	.	+	.	racefrag_1
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	264855	264894	.	+	.	racefrag_2
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	270694	270753	.	+	.	racefrag_3
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	271607	271635	.	+	.	racefrag_4
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	271691	271917	.	+	.	racefrag_5
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	272018	272025	.	+	.	racefrag_6
chr16	5pr_Known_Brain-3_signal.bed_COR.bed	fragmented_racefrag	272026	272080	.	+	.	racefrag_7
track name="RACEfragsPlacenta" description="RACEfrags LA16c-314G4.1-5RACE239 Placenta" 
track name="RACEfragsColon" description="RACEfrags LA16c-314G4.1-5RACE239 Colon" 
chr16	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	255377	255420	.	+	.	racefrag_1
chr16	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	255468	255569	.	+	.	racefrag_2
chr16	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	255653	255755	.	+	.	racefrag_3
chr16	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	271795	271917	.	+	.	racefrag_4
chr16	5pr_Known_Colon-3_signal.bed_COR.bed	fragmented_racefrag	272041	272080	.	+	.	racefrag_5
track name="RACEfragsSmall_Intest" description="RACEfrags LA16c-314G4.1-5RACE239 Small_Intest" 
chr16	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	258656	258677	.	+	.	racefrag_1
chr16	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	258721	258815	.	+	.	racefrag_2
chr16	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	258877	258991	.	+	.	racefrag_3
chr16	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	264855	264894	.	+	.	racefrag_4
chr16	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	271795	271917	.	+	.	racefrag_5
chr16	5pr_Known_Small_Intest-3_signal.bed_COR.bed	fragmented_racefrag	272041	272080	.	+	.	racefrag_6
track name="RACEfragsHeart" description="RACEfrags LA16c-314G4.1-5RACE239 Heart" 
chr16	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	255270	255310	.	+	.	racefrag_1
chr16	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	270694	270736	.	+	.	racefrag_2
chr16	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	271795	271917	.	+	.	racefrag_3
chr16	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	272041	272080	.	+	.	racefrag_4
chr16	5pr_Known_Heart-3_signal.bed_COR.bed	fragmented_racefrag	71595	72240	.	+	.	racefrag_5
track name="RACEfragsSpleen" description="RACEfrags LA16c-314G4.1-5RACE239 Spleen" 
track name="RACEfragsKidney" description="RACEfrags LA16c-314G4.1-5RACE239 Kidney" 
track name="RACEfragsStomach" description="RACEfrags LA16c-314G4.1-5RACE239 Stomach" 
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	109379	109400	.	+	.	racefrag_1
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	250046	250067	.	+	.	racefrag_2
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	250108	250134	.	+	.	racefrag_3
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	258721	258773	.	+	.	racefrag_4
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	258877	258991	.	+	.	racefrag_5
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	270694	270715	.	+	.	racefrag_6
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	271445	271655	.	+	.	racefrag_7
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	271727	271816	.	+	.	racefrag_8
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	271861	271917	.	+	.	racefrag_9
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	272018	272025	.	+	.	racefrag_10
chr16	5pr_Known_Stomach-3_signal.bed_COR.bed	fragmented_racefrag	272026	272108	.	+	.	racefrag_11
track name="RACEfragsLung" description="RACEfrags LA16c-314G4.1-5RACE239 Lung" 
track name="RACEfragsTesti" description="RACEfrags LA16c-314G4.1-5RACE239 Testi" 
chr16	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	254656	254705	.	+	.	racefrag_1
chr16	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	258877	258991	.	+	.	racefrag_2
chr16	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	259539	259560	.	+	.	racefrag_3
chr16	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	271842	271917	.	+	.	racefrag_4
chr16	5pr_Known_Testi-3_signal.bed_COR.bed	fragmented_racefrag	272041	272080	.	+	.	racefrag_5
track name="RACEfragsMuscle" description="RACEfrags LA16c-314G4.1-5RACE239 Muscle" 
track name="RACEfragsLiver" description="RACEfrags LA16c-314G4.1-5RACE239 Liver" 
track name="RACEfragsGM06990" description="RACEfrags LA16c-314G4.1-5RACE239 GM06990" 
track name="RACEfragsHL60" description="RACEfrags LA16c-314G4.1-5RACE239 HL60" 
track name="RACEfragsHeLa" description="RACEfrags LA16c-314G4.1-5RACE239 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE239_chr16_258721_258773 Stomach" visibility=0 color=160,30,200
chr16	exonerate:est2genome	exon	258727	259005	.	+	.	5RACE239_chr16_258721_258773-08250B05
chr16	exonerate:est2genome	exon	272026	272085	.	+	.	5RACE239_chr16_258721_258773-08250B05
chr16	exonerate:est2genome	exon	258731	259005	.	+	.	5RACE239_chr16_258721_258773-08250D05
chr16	exonerate:est2genome	exon	271747	271926	.	+	.	5RACE239_chr16_258721_258773-08250D05
chr16	exonerate:est2genome	exon	272026	272085	.	+	.	5RACE239_chr16_258721_258773-08250D05
chr16	exonerate:est2genome	exon	258727	259005	.	+	.	5RACE239_chr16_258721_258773-08250F05
chr16	exonerate:est2genome	exon	271747	271926	.	+	.	5RACE239_chr16_258721_258773-08250F05
chr16	exonerate:est2genome	exon	272026	272085	.	+	.	5RACE239_chr16_258721_258773-08250F05
chr16	exonerate:est2genome	exon	258727	259005	.	+	.	5RACE239_chr16_258721_258773-08250G05
chr16	exonerate:est2genome	exon	271747	271926	.	+	.	5RACE239_chr16_258721_258773-08250G05
chr16	exonerate:est2genome	exon	272026	272085	.	+	.	5RACE239_chr16_258721_258773-08250G05
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE239_chr16_258721_258773" visibility=3 color=160,30,100
chr16	exonerate:est2genome	exon	258727	259005	.	+	.	5RACE239_chr16_258721_258773-08250B05
chr16	exonerate:est2genome	exon	272026	272085	.	+	.	5RACE239_chr16_258721_258773-08250B05
chr16	exonerate:est2genome	exon	258727	259005	.	+	.	5RACE239_chr16_258721_258773-08250F05
chr16	exonerate:est2genome	exon	271747	271926	.	+	.	5RACE239_chr16_258721_258773-08250F05
chr16	exonerate:est2genome	exon	272026	272085	.	+	.	5RACE239_chr16_258721_258773-08250F05
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE239_chr16_258721_258773" visibility=3 color=240,40,200
chr16	Known	exon	258727	259005	.	+	.	LA16c-314G4.1-005
chr16	Known	CDS	258727	259005	.	+	2	LA16c-314G4.1-005
chr16	Known	exon	272026	272085	.	+	.	LA16c-314G4.1-005
chr16	Known	CDS	272026	272085	.	+	2	LA16c-314G4.1-005
chr16	Known	exon	258727	259005	.	+	.	LA16c-314G4.1-006
chr16	Known	CDS	258727	259005	.	+	2	LA16c-314G4.1-006
chr16	Known	exon	271747	271926	.	+	.	LA16c-314G4.1-006
chr16	Known	CDS	271747	271926	.	+	2	LA16c-314G4.1-006
chr16	Known	exon	272026	272085	.	+	.	LA16c-314G4.1-006
chr16	Known	CDS	272026	272085	.	+	2	LA16c-314G4.1-006
