browser position  chr21:33618563-33629787
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE174_chr21_33618563_33618802 Spleen" visibility=3 color=255,0,0
chr21	target	racefrag	33618563	33618802	+	.	.	5RACE174_chr21_33618563_33618802
chr21	target	racefrag	33629700	33629787	+	.	.	5RACE174_chr21_33618563_33618802
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE174_chr21_33618563_33618802 Spleen" visibility=3 color=20,20,255
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE174_chr21_33618563_33618802 Spleen" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE174_chr21_33618563_33618802 Spleen" visibility=3 color=20,20,255
chr21	RTPCR_pool33	RTPCRfrag	33618563	33618802	.	.	.	5RACE174_chr21_33618563_33618802
chr21	RTPCR_pool33	RTPCRfrag	33619147	33619299	.	.	.	5RACE174_chr21_33618563_33618802
chr21	RTPCR_pool33	RTPCRfrag	33629177	33629220	.	.	.	5RACE174_chr21_33618563_33618802
chr21	RTPCR_pool33	RTPCRfrag	33629352	33629462	.	.	.	5RACE174_chr21_33618563_33618802
chr21	RTPCR_pool33	RTPCRfrag	33629497	33629556	.	.	.	5RACE174_chr21_33618563_33618802
chr21	RTPCR_pool33	RTPCRfrag	33629691	33629797	.	.	.	5RACE174_chr21_33618563_33618802
track name="RACEfragsBrain" description="RACEfrags AP000298.3-5RACE174 Brain" 
chr21	5pr_Known_Brain-5_signal.bed_COR.bed	fragmented_racefrag	33618563	33618688	.	+	.	racefrag_1
chr21	5pr_Known_Brain-5_signal.bed_COR.bed	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_2
chr21	5pr_Known_Brain-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619299	.	+	.	racefrag_3
chr21	5pr_Known_Brain-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_4
track name="RACEfragsPlacenta" description="RACEfrags AP000298.3-5RACE174 Placenta" 
chr21	5pr_Known_Placenta-5_signal.bed_COR.bed	fragmented_racefrag	33618601	33618688	.	+	.	racefrag_1
chr21	5pr_Known_Placenta-5_signal.bed_COR.bed	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_2
chr21	5pr_Known_Placenta-5_signal.bed_COR.bed	fragmented_racefrag	33619173	33619299	.	+	.	racefrag_3
chr21	5pr_Known_Placenta-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_4
track name="RACEfragsColon" description="RACEfrags AP000298.3-5RACE174 Colon" 
track name="RACEfragsSmall_Intest" description="RACEfrags AP000298.3-5RACE174 Small_Intest" 
chr21	5pr_Known_Small_Intest-5_signal.bed_COR.bed	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_1
chr21	5pr_Known_Small_Intest-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619299	.	+	.	racefrag_2
chr21	5pr_Known_Small_Intest-5_signal.bed_COR.bed	fragmented_racefrag	33629352	33629397	.	+	.	racefrag_3
chr21	5pr_Known_Small_Intest-5_signal.bed_COR.bed	fragmented_racefrag	33629691	33629699	.	+	.	racefrag_4
chr21	5pr_Known_Small_Intest-5_signal.bed_COR.bed	fragmented_racefrag	33629700	33629778	.	+	.	racefrag_5
track name="RACEfragsHeart" description="RACEfrags AP000298.3-5RACE174 Heart" 
chr21	5pr_Known_Heart-5_signal.bed_COR.bed	fragmented_racefrag	33618641	33618688	.	+	.	racefrag_1
chr21	5pr_Known_Heart-5_signal.bed_COR.bed	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_2
chr21	5pr_Known_Heart-5_signal.bed_COR.bed	fragmented_racefrag	33619173	33619299	.	+	.	racefrag_3
chr21	5pr_Known_Heart-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_4
track name="RACEfragsSpleen" description="RACEfrags AP000298.3-5RACE174 Spleen" 
chr21	5pr_Known_Spleen-5_signal.bed_COR.bed	fragmented_racefrag	33618563	33618802	.	+	.	racefrag_1
chr21	5pr_Known_Spleen-5_signal.bed_COR.bed	fragmented_racefrag	33619173	33619299	.	+	.	racefrag_2
chr21	5pr_Known_Spleen-5_signal.bed_COR.bed	fragmented_racefrag	33629352	33629397	.	+	.	racefrag_3
chr21	5pr_Known_Spleen-5_signal.bed_COR.bed	fragmented_racefrag	33629691	33629699	.	+	.	racefrag_4
chr21	5pr_Known_Spleen-5_signal.bed_COR.bed	fragmented_racefrag	33629700	33629797	.	+	.	racefrag_5
track name="RACEfragsKidney" description="RACEfrags AP000298.3-5RACE174 Kidney" 
chr21	5pr_Known_Kidney-5_signal.bed_COR.bed	fragmented_racefrag	33618563	33618802	.	+	.	racefrag_1
chr21	5pr_Known_Kidney-5_signal.bed_COR.bed	fragmented_racefrag	33619120	33619299	.	+	.	racefrag_2
chr21	5pr_Known_Kidney-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_3
track name="RACEfragsStomach" description="RACEfrags AP000298.3-5RACE174 Stomach" 
chr21	5pr_Known_Stomach-5_signal.bed_COR.bed	fragmented_racefrag	33554825	33554886	.	+	.	racefrag_1
chr21	5pr_Known_Stomach-5_signal.bed_COR.bed	fragmented_racefrag	33618601	33618802	.	+	.	racefrag_2
chr21	5pr_Known_Stomach-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619278	.	+	.	racefrag_3
chr21	5pr_Known_Stomach-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_4
track name="RACEfragsLung" description="RACEfrags AP000298.3-5RACE174 Lung" 
chr21	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	33618601	33618802	.	+	.	racefrag_1
chr21	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619278	.	+	.	racefrag_2
chr21	5pr_Known_Lung-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_3
track name="RACEfragsTesti" description="RACEfrags AP000298.3-5RACE174 Testi" 
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33618586	33618688	.	+	.	racefrag_1
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_2
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619299	.	+	.	racefrag_3
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33629177	33629220	.	+	.	racefrag_4
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33629352	33629397	.	+	.	racefrag_5
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33629691	33629699	.	+	.	racefrag_6
chr21	5pr_Known_Testi-5_signal.bed_COR.bed	fragmented_racefrag	33629700	33629778	.	+	.	racefrag_7
track name="RACEfragsMuscle" description="RACEfrags AP000298.3-5RACE174 Muscle" 
chr21	5pr_Known_Muscle-5_signal.bed_COR.bed	fragmented_racefrag	33618563	33618688	.	+	.	racefrag_1
chr21	5pr_Known_Muscle-5_signal.bed_COR.bed	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_2
chr21	5pr_Known_Muscle-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619299	.	+	.	racefrag_3
chr21	5pr_Known_Muscle-5_signal.bed_COR.bed	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_4
track name="RACEfragsLiver" description="RACEfrags AP000298.3-5RACE174 Liver" 
chr21	5pr_Known_Liver-5_signal.bed_COR.bed	fragmented_racefrag	33619147	33619299	.	+	.	racefrag_1
chr21	5pr_Known_Liver-5_signal.bed_COR.bed	fragmented_racefrag	33629352	33629397	.	+	.	racefrag_2
chr21	5pr_Known_Liver-5_signal.bed_COR.bed	fragmented_racefrag	33629691	33629699	.	+	.	racefrag_3
chr21	5pr_Known_Liver-5_signal.bed_COR.bed	fragmented_racefrag	33629700	33629778	.	+	.	racefrag_4
track name="RACEfragsGM06990" description="RACEfrags AP000298.3-5RACE174 GM06990" 
chr21	GeCo_5prRACE_Alex_GM06990_pool_5_signal.bed.mod	fragmented_racefrag	33619011	33619034	.	+	.	racefrag_1
chr21	GeCo_5prRACE_Alex_GM06990_pool_5_signal.bed.mod	fragmented_racefrag	33619173	33619299	.	+	.	racefrag_2
chr21	GeCo_5prRACE_Alex_GM06990_pool_5_signal.bed.mod	fragmented_racefrag	33629714	33629778	.	+	.	racefrag_3
track name="RACEfragsHL60" description="RACEfrags AP000298.3-5RACE174 HL60" 
chr21	GeCo_5prRACE_Alex_HL60_pool_5_signal.bed.mod	fragmented_racefrag	33618669	33618688	.	+	.	racefrag_1
chr21	GeCo_5prRACE_Alex_HL60_pool_5_signal.bed.mod	fragmented_racefrag	33618735	33618802	.	+	.	racefrag_2
chr21	GeCo_5prRACE_Alex_HL60_pool_5_signal.bed.mod	fragmented_racefrag	33619173	33619299	.	+	.	racefrag_3
chr21	GeCo_5prRACE_Alex_HL60_pool_5_signal.bed.mod	fragmented_racefrag	33629714	33629797	.	+	.	racefrag_4
track name="RACEfragsHeLa" description="RACEfrags AP000298.3-5RACE174 HeLa" 
chr21	5pr_Known_HeLa-5_signal.bed.mod	fragmented_racefrag	33618589	33618609	.	+	.	racefrag_1
chr21	5pr_Known_HeLa-5_signal.bed.mod	fragmented_racefrag	33619161	33619286	.	+	.	racefrag_2
chr21	5pr_Known_HeLa-5_signal.bed.mod	fragmented_racefrag	33629702	33629765	.	+	.	racefrag_3
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE174_chr21_33618563_33618802 Spleen" visibility=0 color=160,30,200
chr21	exonerate:est2genome	exon	33618652	33618813	.	+	.	5RACE174_chr21_33618563_33618802-9a08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33629700	33629787	.	+	.	5RACE174_chr21_33618563_33618802-9a08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33618652	33618813	.	+	.	5RACE174_chr21_33618563_33618802-9b08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33629700	33629787	.	+	.	5RACE174_chr21_33618563_33618802-9b08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33618652	33618813	.	+	.	5RACE174_chr21_33618563_33618802-9g08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33629700	33629787	.	+	.	5RACE174_chr21_33618563_33618802-9g08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33619135	33619306	.	+	.	5RACE174_chr21_33618563_33618802-9h08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33629700	33629794	.	+	.	5RACE174_chr21_33618563_33618802-9h08.fasta.screen.Contig1
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE174_chr21_33618563_33618802" visibility=3 color=160,30,100
chr21	exonerate:est2genome	exon	33618652	33618813	.	+	.	5RACE174_chr21_33618563_33618802-9a08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33629700	33629787	.	+	.	5RACE174_chr21_33618563_33618802-9a08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33619135	33619306	.	+	.	5RACE174_chr21_33618563_33618802-9h08.fasta.screen.Contig1
chr21	exonerate:est2genome	exon	33629700	33629794	.	+	.	5RACE174_chr21_33618563_33618802-9h08.fasta.screen.Contig1
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE174_chr21_33618563_33618802" visibility=3 color=240,40,200
chr21	Known	exon	33618652	33618813	.	+	.	AP000298.3-002
chr21	Known	exon	33629700	33629787	.	+	.	AP000298.3-002
chr21	Known	exon	33619079	33619306	.	+	.	AP000298.3-001
chr21	Known	CDS	33619231	33619306	.	+	0	AP000298.3-001
chr21	Known	start_codon	33619231	33619233	.	+	0	AP000298.3-001
chr21	Known	exon	33629700	33629823	.	+	.	AP000298.3-001
chr21	Known	CDS	33629700	33629823	.	+	2	AP000298.3-001
chr21	Known	exon	33635175	33635350	.	+	.	AP000298.3-001
chr21	Known	CDS	33635175	33635350	.	+	1	AP000298.3-001
chr21	Known	exon	33637444	33637598	.	+	.	AP000298.3-001
chr21	Known	CDS	33637444	33637598	.	+	2	AP000298.3-001
chr21	Known	exon	33637711	33637852	.	+	.	AP000298.3-001
chr21	Known	CDS	33637711	33637852	.	+	0	AP000298.3-001
chr21	Known	exon	33639422	33639536	.	+	.	AP000298.3-001
chr21	Known	CDS	33639422	33639536	.	+	2	AP000298.3-001
chr21	Known	exon	33643267	33643466	.	+	.	AP000298.3-001
chr21	Known	CDS	33643267	33643466	.	+	1	AP000298.3-001
chr21	Known	exon	33643565	33643719	.	+	.	AP000298.3-001
chr21	Known	CDS	33643565	33643719	.	+	2	AP000298.3-001
chr21	Known	exon	33646934	33647084	.	+	.	AP000298.3-001
chr21	Known	CDS	33646934	33647084	.	+	0	AP000298.3-001
chr21	Known	exon	33647814	33647959	.	+	.	AP000298.3-001
chr21	Known	CDS	33647814	33647959	.	+	2	AP000298.3-001
chr21	Known	exon	33649492	33654038	.	+	.	AP000298.3-001
chr21	Known	CDS	33649492	33649722	.	+	0	AP000298.3-001
chr21	Known	stop_codon	33649723	33649725	.	+	0	AP000298.3-001
