browser position  chr9:128949709-128951115
browser pack Gencode Genes
track name="targets" description="RTPCR target 5RACE005_chr9_128951111_128951115 Testi" visibility=3 color=255,0,0
chr9	target	racefrag	128951111	128951115	-	.	.	5RACE005_chr9_128951111_128951115
chr9	target	racefrag	128949709	128949910	-	.	.	5RACE005_chr9_128951111_128951115
track name="RTPCRfrags" description="RTPCRfrags Affy 5RACE005_chr9_128951111_128951115 Testi" visibility=3 color=20,20,255
track name="RTPCRfrags_d" description="RTPCRfrags Affy oligodT 5RACE005_chr9_128951111_128951115 Testi" visibility=3 color=20,20,255
track name="RTPCRfrags_Geneva" description="RTPCRfrags Geneva  5RACE005_chr9_128951111_128951115 Testi" visibility=3 color=20,20,255
chr9	RTPCR_pool19	RTPCRfrag	128949729	128949974	.	.	.	5RACE005_chr9_128951111_128951115
chr9	RTPCR_pool19	RTPCRfrag	128950144	128950177	.	.	.	5RACE005_chr9_128951111_128951115
chr9	RTPCR_pool19	RTPCRfrag	128950221	128950366	.	.	.	5RACE005_chr9_128951111_128951115
chr9	RTPCR_pool19	RTPCRfrag	128950594	128950759	.	.	.	5RACE005_chr9_128951111_128951115
chr9	RTPCR_pool19	RTPCRfrag	128950839	128950875	.	.	.	5RACE005_chr9_128951111_128951115
chr9	RTPCR_pool19	RTPCRfrag	128950951	128951115	.	.	.	5RACE005_chr9_128951111_128951115
track name="RACEfragsBrain" description="RACEfrags RP11-247A12.5-5RACE005 Brain" 
chr9	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_2
chr9	5pr_Known_Brain-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952502	.	+	.	racefrag_3
track name="RACEfragsPlacenta" description="RACEfrags RP11-247A12.5-5RACE005 Placenta" 
chr9	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949803	.	+	.	racefrag_1
chr9	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	128951029	128951093	.	+	.	racefrag_2
chr9	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_3
chr9	5pr_Known_Placenta-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952502	.	+	.	racefrag_4
track name="RACEfragsColon" description="RACEfrags RP11-247A12.5-5RACE005 Colon" 
chr9	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	128951012	128951093	.	+	.	racefrag_2
chr9	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_3
chr9	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952479	.	+	.	racefrag_4
chr9	5pr_Known_Colon-1_signal.bed_COR.bed	fragmented_racefrag	129128683	129128704	.	+	.	racefrag_5
track name="RACEfragsSmall_Intest" description="RACEfrags RP11-247A12.5-5RACE005 Small_Intest" 
chr9	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	128949768	128949803	.	+	.	racefrag_1
chr9	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	128949909	128949910	.	+	.	racefrag_2
chr9	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	128949911	128949930	.	+	.	racefrag_3
chr9	5pr_Known_Small_Intest-1_signal.bed_COR.bed	fragmented_racefrag	128951029	128951093	.	+	.	racefrag_4
track name="RACEfragsHeart" description="RACEfrags RP11-247A12.5-5RACE005 Heart" 
chr9	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	128949768	128949803	.	+	.	racefrag_1
chr9	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_2
chr9	5pr_Known_Heart-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952502	.	+	.	racefrag_3
track name="RACEfragsSpleen" description="RACEfrags RP11-247A12.5-5RACE005 Spleen" 
chr9	5pr_Known_Spleen-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952371	.	+	.	racefrag_1
track name="RACEfragsKidney" description="RACEfrags RP11-247A12.5-5RACE005 Kidney" 
chr9	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	128950648	128950711	.	+	.	racefrag_2
chr9	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	128951012	128951093	.	+	.	racefrag_3
chr9	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_4
chr9	5pr_Known_Kidney-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952458	.	+	.	racefrag_5
track name="RACEfragsStomach" description="RACEfrags RP11-247A12.5-5RACE005 Stomach" 
chr9	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	128951029	128951093	.	+	.	racefrag_2
chr9	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_3
chr9	5pr_Known_Stomach-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952502	.	+	.	racefrag_4
track name="RACEfragsLung" description="RACEfrags RP11-247A12.5-5RACE005 Lung" 
track name="RACEfragsTesti" description="RACEfrags RP11-247A12.5-5RACE005 Testi" 
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128949909	128949910	.	+	.	racefrag_2
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128949911	128949930	.	+	.	racefrag_3
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950594	128950595	.	+	.	racefrag_4
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950596	128950615	.	+	.	racefrag_5
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950648	128950725	.	+	.	racefrag_6
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950726	128950731	.	+	.	racefrag_7
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950732	128950759	.	+	.	racefrag_8
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950839	128950849	.	+	.	racefrag_9
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128950850	128950875	.	+	.	racefrag_10
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128951012	128951110	.	+	.	racefrag_11
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128951111	128951115	.	+	.	racefrag_12
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_13
chr9	5pr_Known_Testi-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952502	.	+	.	racefrag_14
track name="RACEfragsMuscle" description="RACEfrags RP11-247A12.5-5RACE005 Muscle" 
chr9	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	128951029	128951093	.	+	.	racefrag_2
chr9	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_3
chr9	5pr_Known_Muscle-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952502	.	+	.	racefrag_4
track name="RACEfragsLiver" description="RACEfrags RP11-247A12.5-5RACE005 Liver" 
chr9	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	128949729	128949867	.	+	.	racefrag_1
chr9	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	128951029	128951093	.	+	.	racefrag_2
chr9	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	128952333	128952386	.	+	.	racefrag_3
chr9	5pr_Known_Liver-1_signal.bed_COR.bed	fragmented_racefrag	128952437	128952458	.	+	.	racefrag_4
track name="RACEfragsGM06990" description="RACEfrags RP11-247A12.5-5RACE005 GM06990" 
track name="RACEfragsHL60" description="RACEfrags RP11-247A12.5-5RACE005 HL60" 
chr9	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	128949848	128949867	.	+	.	racefrag_1
chr9	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	128952314	128952315	.	+	.	racefrag_2
chr9	GeCo_5prRACE_Alex_HL60_pool_1_signal.bed.mod	fragmented_racefrag	128952316	128952333	.	+	.	racefrag_3
track name="RACEfragsHeLa" description="RACEfrags RP11-247A12.5-5RACE005 HeLa" 
track name="sequences" description="RTPCR sequence(s) mapped by exonerate before filtering 5RACE005_chr9_128951111_128951115 Testi" visibility=0 color=160,30,200
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1a02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1a02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1b02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1b02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1c02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128950596	128950736	.	+	.	5RACE005_chr9_128951111_128951115-1c02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1c02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1d02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1d02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1e02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128950596	128950736	.	+	.	5RACE005_chr9_128951111_128951115-1e02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1e02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1f02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128950596	128950736	.	+	.	5RACE005_chr9_128951111_128951115-1f02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1f02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1g02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1g02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1h02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1h02.fasta.screen.Contig1
track name="sequences_Kept" description="RTPCR sequence(s) mapped by exonerate, used for Gencode analysis for RT-PCR 5RACE005_chr9_128951111_128951115" visibility=3 color=160,30,100
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1a02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1a02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128949707	128949910	.	+	.	5RACE005_chr9_128951111_128951115-1c02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128950596	128950736	.	+	.	5RACE005_chr9_128951111_128951115-1c02.fasta.screen.Contig1
chr9	exonerate:est2genome	exon	128951012	128951109	.	+	.	5RACE005_chr9_128951111_128951115-1c02.fasta.screen.Contig1
track name="sequences_Gencode" description="Gencode (re)annotated transcript(s) supported by the sequences for RT-PCR 5RACE005_chr9_128951111_128951115" visibility=3 color=240,40,200
chr9	Known	exon	128951012	128951109	.	-	.	RP11-247A12.5-009
chr9	Known	exon	128950596	128950736	.	-	.	RP11-247A12.5-009
chr9	Known	exon	128949709	128949910	.	-	.	RP11-247A12.5-009
