This directory contains the June 28, 2002 GenBank freeze assembled 
by NCBI. The annotations are from UCSC and collaborators worldwide.

Due to its large size, we are no longer providing the 
database.zip file for this assembly (Genome Browser database
as tab-delimited files and associated MySQL table creation 
files). The files formerly contained in database.zip may still 
be downloaded individually from this assembly's database 
directory. 

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgarchive.cse.ucsc.edu, then go to the directory 
goldenPath/28jun2002/bigZips. To download multiple files, use 
the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 
 
------------------------------------------------------------
chromAgp.zip - Description of how the assembly was generated from
    fragments, unpacking to one file per chromosome.  

chromFa.zip - The working draft sequence chromosome in one file
    per chromosome. Repeats from RepeatMasker and Tandem Repeats 
    Finder (with period of 12 or less) are in lower case; 
    non-repeating sequence is in upper case.

chromMm2AxtBest.zip - AXT alignments of Feb. 2002 release Mouse (mm2) 
    against human, generated by Scott Schwartz and filtered by 
    Jim Kent's axtBest program.  Unpacks to one file per chromosome.

chromOut.zip - RepeatMasker .out file for chromosomes.  These were 
    created with RepeatMasker at the -s sensitive setting.

contigAgp.zip - Description of how the working draft was generated 
    from fragments at a contig layout level. 

contigFa.zip - The working draft sequence, in one file per NCBI
    contig.  All contigs are in forward orientation relative
    to the chromosome, which means that some will be reversed 
    relative to their orientation in the NCBI assembly. Repeats 
    from RepeatMasker and Tandem Repeats Finder (with period of 
    12 or less) are in lower case; non-repeating sequence 
    is in upper case.

contigOut.zip - RepeatMasker .out file for contigs.  These were 
    created with RepeatMasker at the -s sensitive setting.

database.zip - The Genome Browser database as tab-delimited files
    and associated MySQL table creation files.

liftAll.zip - A file that contains the offsets of contigs within
    chromosomes.

mrna.zip - A zipped-up file of human mRNA from GenBank.    
      Name                    Last modified      Size  Description
Parent Directory - chromFa.zip 2003-01-02 09:59 883M liftAll.zip 2002-08-14 11:16 19K chromMm2AxtBest.zip 2002-08-08 15:35 577M contigAgp.zip 2002-08-06 09:41 1.2M chromAgp.zip 2002-08-06 09:41 1.0M contigOut.zip 2002-08-01 13:43 147M mrna.zip 2002-08-01 13:32 39M contigFa.zip 2002-08-01 13:28 882M chromOut.zip 2002-08-01 12:31 148M