This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2019 (Kamilah_GGO_v0/gorGor6) assembly of the gorilla genome
    (gorGor6, University of Washington) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/2156
    https://www.ncbi.nlm.nih.gov/genome/assembly/4439481
    https://www.ncbi.nlm.nih.gov/bioproject/369439
    https://www.ncbi.nlm.nih.gov/biosample/SAMN11078986

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=gorGor6
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/gorGor6/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql gorGor6 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql gorGor6 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_mrna.sql 05-Dec-2019 11:48 2.1K all_mrna.txt.gz 05-Dec-2019 11:48 21K augustusGene.sql 20-Nov-2019 14:04 1.9K augustusGene.txt.gz 20-Nov-2019 14:04 2.2M bigFiles.sql 20-Sep-2020 03:06 1.4K bigFiles.txt.gz 20-Sep-2020 03:06 119 chainHg38.sql 21-Nov-2019 10:06 1.7K chainHg38.txt.gz 21-Nov-2019 10:06 48M chainHg38Link.sql 21-Nov-2019 10:07 1.5K chainHg38Link.txt.gz 21-Nov-2019 10:07 166M chainMm10.sql 21-Nov-2019 08:43 1.7K chainMm10.txt.gz 21-Nov-2019 08:43 99M chainMm10Link.sql 21-Nov-2019 08:47 1.5K chainMm10Link.txt.gz 21-Nov-2019 08:47 567M chromAlias.sql 19-Nov-2019 13:47 1.4K chromAlias.txt.gz 19-Nov-2019 13:47 56K chromInfo.sql 19-Nov-2019 12:34 1.4K chromInfo.txt.gz 19-Nov-2019 12:34 34K cpgIslandExt.sql 20-Nov-2019 11:07 1.7K cpgIslandExt.txt.gz 20-Nov-2019 11:07 579K cpgIslandExtUnmasked.sql 19-Nov-2019 13:32 1.7K cpgIslandExtUnmasked.txt.gz 19-Nov-2019 13:32 951K crisprAllTargets.sql 27-Nov-2019 14:33 1.3K crisprAllTargets.txt.gz 27-Nov-2019 14:33 69 cytoBandIdeo.sql 19-Nov-2019 12:34 1.5K cytoBandIdeo.txt.gz 19-Nov-2019 12:34 31K extNcbiRefSeq.sql 20-Nov-2019 13:57 1.4K extNcbiRefSeq.txt.gz 20-Nov-2019 13:57 91 gap.sql 19-Nov-2019 10:40 1.6K gap.txt.gz 19-Nov-2019 10:40 14K gc5BaseBw.sql 19-Nov-2019 11:59 1.3K gc5BaseBw.txt.gz 19-Nov-2019 11:59 66 genscan.sql 20-Nov-2019 12:43 1.7K genscan.txt.gz 20-Nov-2019 12:43 2.8M gold.sql 19-Nov-2019 10:40 1.7K gold.txt.gz 19-Nov-2019 10:40 81K grp.sql 19-Nov-2019 12:34 1.3K grp.txt.gz 19-Nov-2019 12:34 213 hgFindSpec.sql 24-Aug-2020 17:20 1.7K hgFindSpec.txt.gz 24-Aug-2020 17:20 1.0K history.sql 27-Nov-2019 14:33 1.6K history.txt.gz 27-Nov-2019 14:33 899 microsat.sql 20-Nov-2019 11:02 1.5K microsat.txt.gz 20-Nov-2019 11:02 307K mrnaOrientInfo.sql 05-Dec-2019 15:40 1.8K mrnaOrientInfo.txt.gz 05-Dec-2019 15:40 12K ncbiRefSeq.sql 20-Nov-2019 12:12 1.9K ncbiRefSeq.txt.gz 20-Nov-2019 12:12 3.3M ncbiRefSeqCds.sql 20-Nov-2019 13:57 1.3K ncbiRefSeqCds.txt.gz 20-Nov-2019 13:57 350K ncbiRefSeqCurated.sql 20-Nov-2019 12:12 2.0K ncbiRefSeqCurated.txt.gz 20-Nov-2019 12:12 17K ncbiRefSeqLink.sql 20-Nov-2019 12:12 2.0K ncbiRefSeqLink.txt.gz 20-Nov-2019 12:12 1.6M ncbiRefSeqOther.sql 20-Nov-2019 13:57 1.3K ncbiRefSeqOther.txt.gz 20-Nov-2019 13:57 75 ncbiRefSeqPepTable.sql 20-Nov-2019 13:57 1.4K ncbiRefSeqPepTable.txt.gz 20-Nov-2019 13:57 9.1M ncbiRefSeqPredicted.sql 20-Nov-2019 12:12 2.0K ncbiRefSeqPredicted.txt.gz 20-Nov-2019 12:12 3.3M ncbiRefSeqPsl.sql 20-Nov-2019 12:12 2.1K ncbiRefSeqPsl.txt.gz 20-Nov-2019 12:12 4.3M nestedRepeats.sql 19-Nov-2019 20:12 1.9K nestedRepeats.txt.gz 19-Nov-2019 20:12 17M netHg38.sql 21-Nov-2019 10:08 2.1K netHg38.txt.gz 21-Nov-2019 10:08 6.2M netMm10.sql 21-Nov-2019 08:51 2.1K netMm10.txt.gz 21-Nov-2019 08:51 81M refFlat.sql 06-May-2020 15:21 1.7K refFlat.txt.gz 06-May-2020 15:21 15K refGene.sql 06-May-2020 15:21 1.9K refGene.txt.gz 06-May-2020 15:21 18K refSeqAli.sql 05-Dec-2019 12:00 2.1K refSeqAli.txt.gz 05-Dec-2019 12:00 17K rmsk.sql 19-Nov-2019 20:10 1.9K rmsk.txt.gz 19-Nov-2019 20:10 137M seqNcbiRefSeq.sql 20-Nov-2019 13:57 1.5K seqNcbiRefSeq.txt.gz 20-Nov-2019 13:57 947K simpleRepeat.sql 19-Nov-2019 17:36 1.9K simpleRepeat.txt.gz 19-Nov-2019 17:36 25M tableDescriptions.sql 22-Aug-2020 02:04 1.4K tableDescriptions.txt.gz 22-Aug-2020 02:04 6.0K tableList.sql 20-Sep-2020 03:06 1.5K tableList.txt.gz 20-Sep-2020 03:06 2.8K trackDb.sql 24-Aug-2020 17:27 2.0K trackDb.txt.gz 24-Aug-2020 17:27 31K ucscToINSDC.sql 19-Nov-2019 13:44 1.4K ucscToINSDC.txt.gz 19-Nov-2019 13:44 49K ucscToRefSeq.sql 19-Nov-2019 20:41 1.4K ucscToRefSeq.txt.gz 19-Nov-2019 20:41 46K windowmaskerSdust.sql 19-Nov-2019 23:41 1.5K windowmaskerSdust.txt.gz 19-Nov-2019 23:41 143M xenoRefFlat.sql 06-May-2020 15:36 1.7K xenoRefFlat.txt.gz 06-May-2020 15:36 21M xenoRefGene.sql 06-May-2020 15:36 1.9K xenoRefGene.txt.gz 06-May-2020 15:36 23M xenoRefSeqAli.sql 06-May-2020 15:36 2.1K xenoRefSeqAli.txt.gz 06-May-2020 15:36 25M