This directory contains compressed phastCons scores for multiple
alignments of the following assemblies to the chicken genome
(May 2006, galGal3):
- human (Mar 2006, hg18)
- mouse (Feb 2006, mm8)
- rat (Nov. 2004, rn4)
- opossum (Jan 2006, monDom4)
- X. tropicalis (Aug. 2005, xenTro2)
- zebrafish (Mar 2006, danRer4)
For a description of the phastCons file format, see
http://genome.ucsc.edu/goldenPath/help/phastCons.html.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/galGal3/phastCons7way. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All files in this directory are freely available for public use.
For data use restrictions regarding the other genome assemblies used
in this annotation, see http://genome.ucsc.edu/goldenPath/credits.html.
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References for phastCons:
Siepel, A., Bejerano, G., Pedersen, J.S., Hinrichs, A., Hou, M.,
Rosenbloom, K., Clawson, H., Spieth, J., Hillier, L.W., Richards, S.,
Weinstock, G.M., Wilson, R. K., Gibbs, R.A., Kent, W.J., Miller, W.,
and Haussler, D. Evolutionarily conserved elements in vertebrate, insect,
worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005).
(http://www.genome.org/cgi/doi/10.1101/gr.3715005)
Siepel, A. and Haussler, D. Phylogenetic hidden Markov models.
In Statistical Methods in Molecular Evolution (ed. Nielsen, R.) (Springer,
2005).
For a discussion of the methods used to calculate the phastCons scores,
see the description page for the Conservation track in the Genome
Browser.
Name Last modified Size Description
Parent Directory -
chr1.gz 2006-07-20 16:12 35M
chr1_random.gz 2006-07-20 16:12 53K
chr2.gz 2006-07-20 16:12 28M
chr2_random.gz 2006-07-20 16:13 22K
chr3.gz 2006-07-20 16:13 22M
chr4.gz 2006-07-20 16:13 19M
chr4_random.gz 2006-07-20 16:13 47K
chr5.gz 2006-07-20 16:13 13M
chr5_random.gz 2006-07-20 16:13 12K
chr6.gz 2006-07-20 16:13 7.4M
chr6_random.gz 2006-07-20 16:13 2.5K
chr7.gz 2006-07-20 16:13 9.7M
chr7_random.gz 2006-07-20 16:13 38K
chr8.gz 2006-07-20 16:14 7.9M
chr8_random.gz 2006-07-20 16:14 148K
chr9.gz 2006-07-20 16:14 5.5M
chr10.gz 2006-07-20 16:12 6.0M
chr10_random.gz 2006-07-20 16:12 2.1K
chr11.gz 2006-07-20 16:12 5.9M
chr11_random.gz 2006-07-20 16:12 5.3K
chr12.gz 2006-07-20 16:12 4.7M
chr12_random.gz 2006-07-20 15:44 0
chr13.gz 2006-07-20 16:12 4.1M
chr13_random.gz 2006-07-20 16:12 8.3K
chr14.gz 2006-07-20 16:12 4.2M
chr15.gz 2006-07-20 16:12 3.6M
chr16.gz 2006-07-20 16:12 196K
chr16_random.gz 2006-07-20 16:12 64K
chr17.gz 2006-07-20 16:12 3.2M
chr18.gz 2006-07-20 16:12 3.1M
chr18_random.gz 2006-07-20 16:12 11K
chr19.gz 2006-07-20 16:12 3.1M
chr20.gz 2006-07-20 16:12 3.6M
chr20_random.gz 2006-07-20 16:12 20K
chr21.gz 2006-07-20 16:12 2.3M
chr22.gz 2006-07-20 16:12 1.1M
chr22_random.gz 2006-07-20 16:12 36K
chr23.gz 2006-07-20 16:13 1.6M
chr24.gz 2006-07-20 16:13 2.0M
chr25.gz 2006-07-20 16:13 553K
chr25_random.gz 2006-07-20 16:13 8.8K
chr26.gz 2006-07-20 16:13 1.7M
chr27.gz 2006-07-20 16:13 1.3M
chr28.gz 2006-07-20 16:13 1.4M
chr28_random.gz 2006-07-20 16:13 49K
chrE22C19W28_E50C23.gz 2006-07-20 16:14 399K
chrE22C19W28_E50C23_random.gz 2006-07-20 16:14 80K
chrE64.gz 2006-07-20 16:14 29K
chrE64_random.gz 2006-07-20 16:14 100K
chrM.gz 2006-07-20 16:14 22K
chrUn_random.gz 2006-07-20 16:14 14M
chrW.gz 2006-07-20 16:14 35K
chrW_random.gz 2006-07-20 16:14 148K
chrZ.gz 2006-07-20 16:14 13M
chrZ_random.gz 2006-07-20 16:14 75K
md5sum.txt 2006-07-20 16:34 2.5K