This directory contains the May 2006 assembly of the chicken genome
(galGal3, Chicken Genome Sequencing Consortium May 2006 release) in one gzip-compressed FASTA file per chromosome.

This assembly was produced by the Genome Sequencing Center at the Washington University School of Medicine in St. Louis.
For more information on the chicken genome, see the project website:
  http://genome.wustl.edu/genome.cgi?GENOME=Gallus%20gallus

Files included in this directory:

  - chr*.fa.gz: compressed FASTA sequence of each chromosome.

    Repeats from RepeatMasker and Tandem Repeats Finder (with period
    of 12 or less) are shown in lower case; non-repeating sequence is
    shown in upper case.

    RepeatMasker was run with the -s (sensitive) setting.
    The March 20 2006 (open-3-1-5) version of RepeatMasker and the 
    library release 20060315 were used.

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/galGal3/chromosomes. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

The Chicken sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:

1. The data may be freely downloaded, used in analyses, and repackaged in
   databases.

2. Users are free to use the data in scientific papers analyzing these data
   if the providers of these data are properly cited:
   International Chicken Genome Sequencing Consortium.  
   Sequence and comparative analysis of the chicken genome provide unique
   perspectives on vertebrate evolution.
   Nature. 2004 Dec 9;432(7018):695-716.  PMID: 15592404
   See http://genome.ucsc.edu/goldenPath/credits.html for credit information.

3. Any redistribution of the data should carry this notice.

      Name                             Last modified      Size  Description
Parent Directory - md5sum.txt 2006-08-04 15:50 2.7K chrZ_random.fa.gz 2006-08-04 15:35 97K chrZ.fa.gz 2006-08-04 15:34 21M chrW_random.fa.gz 2006-08-04 15:34 200K chrW.fa.gz 2006-08-04 15:34 77K chrUn_random.fa.gz 2006-08-04 15:34 17M chrM.fa.gz 2006-08-04 15:34 5.3K chrE64_random.fa.gz 2006-08-04 15:34 162K chrE64.fa.gz 2006-08-04 15:34 15K chrE22C19W28_E50C23_random.fa.gz 2006-08-04 15:34 55K chrE22C19W28_E50C23.fa.gz 2006-08-04 15:34 251K chr9.fa.gz 2006-08-04 15:34 7.1M chr8_random.fa.gz 2006-08-04 15:34 132K chr8.fa.gz 2006-08-04 15:34 8.7M chr7_random.fa.gz 2006-08-04 15:34 31K chr7.fa.gz 2006-08-04 15:34 11M chr6_random.fa.gz 2006-08-04 15:34 10K chr6.fa.gz 2006-08-04 15:34 11M chr5_random.fa.gz 2006-08-04 15:34 8.2K chr5.fa.gz 2006-08-04 15:34 18M chr4_random.fa.gz 2006-08-04 15:34 51K chr4.fa.gz 2006-08-04 15:34 28M chr32.fa.gz 2006-08-04 15:34 428 chr3.fa.gz 2006-08-04 15:34 34M chr28_random.fa.gz 2006-08-04 15:34 29K chr28.fa.gz 2006-08-04 15:34 1.1M chr27.fa.gz 2006-08-04 15:34 1.3M chr26.fa.gz 2006-08-04 15:34 1.5M chr25_random.fa.gz 2006-08-04 15:34 22K chr25.fa.gz 2006-08-04 15:34 422K chr24.fa.gz 2006-08-04 15:34 1.9M chr23.fa.gz 2006-08-04 15:34 1.6M chr22_random.fa.gz 2006-08-04 15:34 42K chr22.fa.gz 2006-08-04 15:34 1.2M chr21.fa.gz 2006-08-04 15:34 2.0M chr20_random.fa.gz 2006-08-04 15:34 23K chr20.fa.gz 2006-08-04 15:34 4.1M chr2_random.fa.gz 2006-08-04 15:34 41K chr2.fa.gz 2006-08-04 15:33 46M chr19.fa.gz 2006-08-04 15:33 2.9M chr18_random.fa.gz 2006-08-04 15:33 4.0K chr18.fa.gz 2006-08-04 15:33 3.2M chr17_random.fa.gz 2006-08-04 15:33 1.0K chr17.fa.gz 2006-08-04 15:33 3.1M chr16_random.fa.gz 2006-08-04 15:33 64K chr16.fa.gz 2006-08-04 15:33 119K chr15.fa.gz 2006-08-04 15:33 3.8M chr14.fa.gz 2006-08-04 15:33 4.6M chr13_random.fa.gz 2006-08-04 15:33 11K chr13.fa.gz 2006-08-04 15:33 5.4M chr12_random.fa.gz 2006-08-04 15:33 2.0K chr12.fa.gz 2006-08-04 15:33 5.9M chr11_random.fa.gz 2006-08-04 15:33 21K chr11.fa.gz 2006-08-04 15:33 6.1M chr10_random.fa.gz 2006-08-04 15:33 4.6K chr10.fa.gz 2006-08-04 15:33 6.1M chr1_random.fa.gz 2006-08-04 15:33 67K chr1.fa.gz 2006-08-04 15:33 60M chromOut.tar.gz 2006-07-13 18:10 15M