This directory contains the Feb. 2004 freeze of the chicken genome
(galGal2, Feb. 2004) produced by the Genome Sequencing Center at 
Washington University in St. Louis.

Files included in this directory:

  - chr*.fa.zip: compressed FASTA sequence of each chromosome.
    Repeats (from RepeatMasker and Tandem Repeat Finder) 
    are in lower case while non-repeating sequence is in upper case.
    RepeatMasker January 2004 version with RepBase libraries:
    RepBase Update 8.4, RM database version 20040225

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If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then 
go to the directory goldenPath/galGal2/chromosomes. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

The chicken sequence is made freely available before scientific 
publication with the following understanding: 

1. The data may be freely downloaded, used in analyses, and repackaged 
   in databases. 
2. Users are free to use the data in scientific papers analyzing 
   particular genes and regions if the providers of these data are 
   properly acknowledged. See http://genome.ucsc.edu/goldenPath/credits.html
   for credit information.
3. The centers producing the data reserve the right to publish the initial
   large-scale analyses of the data set, including large-scale identification 
   of regions of evolutionary conservation and large-scale genomic assembly.
   Large-scale refers to regions with size on the order of a chromosome (that 
   is, 30 Mb or more). 
4. Any redistribution of the data should carry this notice. 

      Name                    Last modified      Size  Description
Parent Directory - chr1_random.fa.zip 2004-02-25 14:13 399K chr10.fa.zip 2004-02-25 14:13 5.7M chr10_random.fa.zip 2004-02-25 14:13 1.1M chr11.fa.zip 2004-02-25 14:14 5.4M chr11_random.fa.zip 2004-02-25 14:14 347K chr12.fa.zip 2004-02-25 14:14 5.8M chr13.fa.zip 2004-02-25 14:14 5.1M chr13_random.fa.zip 2004-02-25 14:14 352K chr14.fa.zip 2004-02-25 14:14 6.1M chr15.fa.zip 2004-02-25 14:15 3.7M chr16.fa.zip 2004-02-25 14:15 58K chr16_random.fa.zip 2004-02-25 14:15 87K chr17.fa.zip 2004-02-25 14:15 3.0M chr18.fa.zip 2004-02-25 14:15 2.7M chr19.fa.zip 2004-02-25 14:15 2.8M chr2_random.fa.zip 2004-02-25 14:17 19K chr20.fa.zip 2004-02-25 14:17 4.0M chr21.fa.zip 2004-02-25 14:18 1.8M chr22.fa.zip 2004-02-25 14:18 686K chr23.fa.zip 2004-02-25 14:18 1.5M chr24.fa.zip 2004-02-25 14:18 1.8M chr24_random.fa.zip 2004-02-25 14:18 31K chr26.fa.zip 2004-02-25 14:18 1.1M chr27.fa.zip 2004-02-25 14:18 781K chr27_random.fa.zip 2004-02-25 14:18 216K chr28.fa.zip 2004-02-25 14:18 1.2M chr28_random.fa.zip 2004-02-25 14:18 1.9K chr3.fa.zip 2004-02-25 14:20 33M chr3_random.fa.zip 2004-02-25 14:20 489K chr32.fa.zip 2004-02-25 14:21 308K chr32_random.fa.zip 2004-02-25 14:21 9.9K chr4.fa.zip 2004-02-25 14:22 27M chr4_random.fa.zip 2004-02-25 14:22 338K chr5.fa.zip 2004-02-25 14:23 17M chr5_random.fa.zip 2004-02-25 14:23 11K chr6.fa.zip 2004-02-25 14:23 10M chr6_random.fa.zip 2004-02-25 14:23 1.4K chr7.fa.zip 2004-02-25 14:24 11M chr7_random.fa.zip 2004-02-25 14:24 920 chr8.fa.zip 2004-02-25 14:24 8.6M chr8_random.fa.zip 2004-02-25 14:24 2.1K chr9.fa.zip 2004-02-25 14:25 7.0M chrE22C19W28.fa.zip 2004-02-25 14:25 16K chrE26C13.fa.zip 2004-02-25 14:25 67K chrE50C23.fa.zip 2004-02-25 14:25 3.4K chrE64.fa.zip 2004-02-25 14:25 627 chrM.fa.zip 2004-02-25 14:25 5.4K chrUn.fa.zip 2004-02-25 14:27 39M chrW.fa.zip 2004-02-25 14:27 1.3M chrW_random.fa.zip 2004-02-25 14:27 79K chrZ.fa.zip 2004-02-25 14:27 9.6M chrZ_random.fa.zip 2004-02-25 14:28 4.5M chr1.fa.zip 2004-02-26 09:39 57M chr2.fa.zip 2004-02-26 09:41 44M md5sum.txt 2004-02-26 09:46 2.6K