This directory contains compressed multiple alignments of the 
following assemblies to the fugu genome (fr2, Oct 2004):

  - tetraodon (Feb 2004, tetNig1) 
  - stickleback (Feb 2006, gasAcu1) 
  - medaka (Oct 2005, oryLat1) 
  - zebrafish (Mar 2006, danRer4) 

Files included in this directory:
    chrM.maf.gz and chrUn.maf.gz - alignments to the fugu chrM and scaffolds
  - ensGene.upstream*.maf.gz: alignments to regions (1000, 2000 and 5000) bases 
    upstream of fugu Ensembl genes. 

For a description of multiple alignment format (MAF), see

If you plan to download a large file or multiple files from this 
directory, we recommend that you use ftp rather than downloading the 
files via our website. To do so, ftp to, 
then go to the directory goldenPath/fr2/multiz5way. To download 
multiple files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the files in this directory are freely usable for any 
purpose. For data use restrictions regarding the individual 
genome assemblies, see
      Name                        Last modified      Size  Description
Parent Directory - chrM.maf.gz 2007-03-27 13:11 23K chrUn.maf.gz 2007-03-27 13:16 415M ensGene.upstream1000.maf.gz 2009-08-13 10:23 353K ensGene.upstream2000.maf.gz 2009-08-13 10:23 686K ensGene.upstream5000.maf.gz 2009-08-13 10:24 1.7M maf/ 2019-11-06 10:54 - md5sum.txt 2009-08-13 10:25 279