This directory contains the Dec. 2008 (NHGRI/GTB V17e/felCat4) assembly of the cat genome
(catChrV17e, NHGRI/Genome Technology Branch (NCBI project 10703, accession ACBE0100000)), as well as repeat annotations and GenBank sequences.
This assembly was produced by the Agencourt Bioscience Corporation and
Hill's Pet Nutrition, Inc.. The mitochondrial genome was sequenced by
Laboratory of Genomic Diversity.
For more information on the cat genome, see the project website:
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=10703
http://www.beckmangenomics.com/
http://www.hillspet.com/
http://home.ncifcrf.gov/ccr/lgd/comparative_genome/catgenome/index_n.asp
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat4
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu
[username: anonymous, password: your email address], then cd to the
directory goldenPath/felCat4/database/. To download multiple files, use
the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
all_est.sql 2016-05-15 08:37 2.1K
all_est.txt.gz 2016-05-15 08:37 40K
all_mrna.sql 2020-08-21 18:01 2.1K
all_mrna.txt.gz 2020-08-21 18:01 229K
augustusGene.sql 2015-07-26 13:23 1.9K
augustusGene.txt.gz 2015-07-26 13:23 1.9M
bigFiles.sql 2024-11-17 03:41 1.4K
bigFiles.txt.gz 2024-11-17 03:41 33
blastHg18KG.sql 2011-07-17 08:58 2.1K
blastHg18KG.txt.gz 2011-07-17 08:58 2.8M
chainAilMel1.sql 2010-07-30 14:54 1.6K
chainAilMel1.txt.gz 2010-07-30 14:54 119M
chainAilMel1Link.sql 2010-07-30 15:03 1.5K
chainAilMel1Link.txt.gz 2010-07-30 15:06 703M
chainCanFam2.sql 2010-07-30 15:13 1.6K
chainCanFam2.txt.gz 2010-07-30 15:13 99M
chainCanFam2Link.sql 2010-07-30 14:41 1.5K
chainCanFam2Link.txt.gz 2010-07-30 14:43 691M
chainHg19.sql 2010-07-30 14:55 1.6K
chainHg19.txt.gz 2010-07-30 14:55 39M
chainHg19Link.sql 2010-07-30 14:32 1.5K
chainHg19Link.txt.gz 2010-07-30 14:34 427M
chainMm9.sql 2010-07-30 14:53 1.6K
chainMm9.txt.gz 2010-07-30 14:53 32M
chainMm9Link.sql 2010-07-30 14:59 1.5K
chainMm9Link.txt.gz 2010-07-30 15:00 317M
chainMonDom5.sql 2010-07-30 14:57 1.6K
chainMonDom5.txt.gz 2010-07-30 14:57 27M
chainMonDom5Link.sql 2010-07-30 14:38 1.5K
chainMonDom5Link.txt.gz 2010-07-30 14:38 161M
chromInfo.sql 2010-07-30 14:53 1.3K
chromInfo.txt.gz 2010-07-30 14:53 513K
cpgIslandExt.sql 2010-07-30 14:51 1.6K
cpgIslandExt.txt.gz 2010-07-30 14:52 1.2M
cpgIslandExtUnmasked.sql 2014-06-01 12:58 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:58 1.4M
ctgPos2.sql 2010-07-30 14:53 1.5K
ctgPos2.txt.gz 2010-07-30 14:53 6.8K
estOrientInfo.sql 2016-05-15 08:37 1.8K
estOrientInfo.txt.gz 2016-05-15 08:37 14K
extFile.sql 2011-08-07 08:53 1.4K
extFile.txt.gz 2011-08-07 08:53 80
gap.sql 2010-07-30 15:15 1.5K
gap.txt.gz 2010-07-30 15:15 6.4M
gbLoaded.sql 2020-08-21 18:23 1.6K
gbLoaded.txt.gz 2020-08-21 18:23 43K
gc5Base.sql 2010-07-30 14:56 1.7K
gc5Base.txt.gz 2010-07-30 14:57 13M
gold.sql 2010-10-24 14:29 1.6K
gold.txt.gz 2010-10-24 14:29 9.6M
grp.sql 2014-03-02 03:40 1.3K
grp.txt.gz 2014-03-02 03:40 208
hgFindSpec.sql 2023-03-28 13:49 1.8K
hgFindSpec.txt.gz 2023-03-28 13:49 768
history.sql 2010-07-30 14:57 1.5K
history.txt.gz 2010-07-30 14:57 558
intronEst.sql 2016-05-15 08:37 2.1K
intronEst.txt.gz 2016-05-15 08:37 18K
microsat.sql 2015-08-23 16:18 1.5K
microsat.txt.gz 2015-08-23 16:18 956K
mrnaOrientInfo.sql 2020-08-21 18:06 1.8K
mrnaOrientInfo.txt.gz 2020-08-21 18:06 55K
multiz6way.sql 2011-08-07 08:53 1.5K
multiz6way.txt.gz 2011-08-07 08:53 88M
multiz6wayFrames.sql 2011-08-07 08:53 1.7K
multiz6wayFrames.txt.gz 2011-08-07 08:53 9.2M
multiz6waySummary.sql 2011-08-07 08:54 1.5K
multiz6waySummary.txt.gz 2011-08-07 08:54 12M
nestedRepeats.sql 2010-07-30 15:15 1.9K
nestedRepeats.txt.gz 2010-07-30 15:15 11M
netAilMel1.sql 2010-07-30 14:40 2.0K
netAilMel1.txt.gz 2010-07-30 14:40 58M
netCanFam2.sql 2010-07-30 14:58 2.0K
netCanFam2.txt.gz 2010-07-30 14:58 61M
netHg19.sql 2010-07-30 14:55 2.0K
netHg19.txt.gz 2010-07-30 14:56 60M
netMm9.sql 2010-07-30 15:12 2.0K
netMm9.txt.gz 2010-07-30 15:13 52M
netMonDom5.sql 2010-07-30 15:14 2.0K
netMonDom5.txt.gz 2010-07-30 15:14 15M
nscanGene.sql 2010-11-07 15:10 1.9K
nscanGene.txt.gz 2010-11-07 15:10 1.8M
nscanPep.sql 2010-11-07 15:10 1.3K
nscanPep.txt.gz 2010-11-07 15:10 5.0M
phastCons6way.sql 2011-08-07 08:54 1.7K
phastCons6way.txt.gz 2011-08-07 08:54 62M
phastConsElements6way.sql 2011-08-07 08:53 1.5K
phastConsElements6way.txt.gz 2011-08-07 08:53 10M
phyloP6way.sql 2011-08-07 08:52 1.7K
phyloP6way.txt.gz 2011-08-07 08:52 64M
refFlat.sql 2020-08-21 18:06 1.7K
refFlat.txt.gz 2020-08-21 18:06 33K
refGene.sql 2020-08-21 18:06 1.9K
refGene.txt.gz 2020-08-21 18:06 38K
refSeqAli.sql 2020-08-21 18:10 2.1K
refSeqAli.txt.gz 2020-08-21 18:10 40K
rmsk.sql 2010-07-30 15:15 1.8K
rmsk.txt.gz 2010-07-30 15:15 101M
simpleRepeat.sql 2010-07-30 14:53 1.9K
simpleRepeat.txt.gz 2010-07-30 14:53 18M
tRNAs.sql 2012-04-23 00:03 1.7K
tRNAs.txt.gz 2012-04-23 00:03 85K
tableDescriptions.sql 2024-11-16 02:03 1.5K
tableDescriptions.txt.gz 2024-11-16 02:03 6.2K
tableList.sql 2024-11-17 03:41 1.6K
tableList.txt.gz 2024-11-17 03:41 3.6K
trackDb.sql 2023-03-28 13:49 2.1K
trackDb.txt.gz 2023-03-28 13:49 38K
xenoMrna.sql 2016-02-21 15:39 2.1K
xenoMrna.txt.gz 2016-02-21 15:40 296M
xenoRefFlat.sql 2020-08-21 18:06 1.7K
xenoRefFlat.txt.gz 2020-08-21 18:06 33M
xenoRefGene.sql 2020-08-21 18:06 2.0K
xenoRefGene.txt.gz 2020-08-21 18:06 36M
xenoRefSeqAli.sql 2020-08-21 18:10 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 18:10 36M