This directory contains a dump of the UCSC genome annotation database for the March 2006 assembly of the cat genome (felCat3, Broad Release 3). The annotations were generated by UCSC and collaborators worldwide. This assembly was produced by the Broad Institute at MIT and Harvard. For more information on the cat genome, see the project website: http://www.broad.mit.edu/mammals/ Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. --------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/felCat3/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-21 19:00 37M xenoRefSeqAli.sql 2020-08-21 19:00 2.1K xenoRefGene.txt.gz 2020-08-21 18:41 36M xenoRefGene.sql 2020-08-21 18:41 2.0K xenoRefFlat.txt.gz 2020-08-21 18:44 32M xenoRefFlat.sql 2020-08-21 18:44 1.7K xenoMrna.txt.gz 2016-02-21 15:34 294M xenoMrna.sql 2016-02-21 15:32 2.1K trackDb.txt.gz 2023-03-28 13:49 39K trackDb.sql 2023-03-28 13:49 2.1K tableList.txt.gz 2024-11-10 03:28 3.5K tableList.sql 2024-11-10 03:28 1.6K tableDescriptions.txt.gz 2024-11-09 02:03 6.0K tableDescriptions.sql 2024-11-09 02:03 1.5K tRNAs.txt.gz 2012-04-22 23:54 69K tRNAs.sql 2012-04-22 23:54 1.7K simpleRepeat.txt.gz 2007-01-19 17:10 8.6M simpleRepeat.sql 2007-01-19 17:10 2.0K sgpGene.txt.gz 2007-12-22 12:46 1.7M sgpGene.sql 2007-12-22 12:46 1.9K rmsk.txt.gz 2007-01-19 17:09 77M rmsk.sql 2007-01-19 17:08 1.9K refSeqAli.txt.gz 2020-08-21 18:45 44K refSeqAli.sql 2020-08-21 18:45 2.1K refGene.txt.gz 2020-08-21 18:40 35K refGene.sql 2020-08-21 18:40 1.9K refFlat.txt.gz 2020-08-21 18:40 32K refFlat.sql 2020-08-21 18:40 1.7K quality.txt.gz 2007-01-19 17:08 70M quality.sql 2007-01-19 17:06 1.7K phastConsElements4way.txt.gz 2007-06-21 10:49 3.3M phastConsElements4way.sql 2007-06-21 10:48 1.4K phastCons4way.txt.gz 2007-06-21 10:48 49M phastCons4way.sql 2007-06-21 10:47 1.7K nscanPep.txt.gz 2007-03-14 11:24 4.0M nscanPep.sql 2007-03-14 11:24 1.1K nscanGene.txt.gz 2007-03-14 11:24 1.5M nscanGene.sql 2007-03-14 11:24 2.0K netMm8.txt.gz 2007-01-19 17:06 41M netMm8.sql 2007-01-19 17:05 2.2K netHg19.txt.gz 2009-09-20 09:24 55M netHg19.sql 2009-09-20 09:24 2.3K netCanFam2.txt.gz 2007-01-19 17:03 55M netCanFam2.sql 2007-01-19 17:02 2.2K multiz4waySummary.txt.gz 2007-06-21 10:47 23K multiz4waySummary.sql 2007-06-21 10:47 1.5K multiz4wayFrames.txt.gz 2007-06-21 10:47 5.8M multiz4wayFrames.sql 2007-06-21 10:46 1.6K multiz4way.txt.gz 2007-06-21 10:46 61M multiz4way.sql 2007-06-21 10:45 1.4K mrnaOrientInfo.txt.gz 2020-08-21 18:44 67K mrnaOrientInfo.sql 2020-08-21 18:44 1.8K microsat.txt.gz 2007-01-19 17:02 658K microsat.sql 2007-01-19 17:02 1.3K intronEst.txt.gz 2016-05-15 08:36 15K intronEst.sql 2016-05-15 08:36 2.1K history.txt.gz 2010-07-04 15:39 530 history.sql 2010-07-04 15:39 1.6K hgFindSpec.txt.gz 2023-03-28 13:49 1.0K hgFindSpec.sql 2023-03-28 13:49 1.8K grp.txt.gz 2014-03-02 03:40 208 grp.sql 2014-03-02 03:40 1.4K gold.txt.gz 2007-01-19 17:02 11M gold.sql 2007-01-19 17:02 1.6K genscanSubopt.txt.gz 2007-01-19 17:02 5.8M genscanSubopt.sql 2007-01-19 17:02 1.5K genscanPep.txt.gz 2007-01-19 17:02 8.6M genscanPep.sql 2007-01-19 17:02 1.2K genscan.txt.gz 2007-01-19 17:02 2.7M genscan.sql 2007-01-19 17:02 1.6K geneidPep.txt.gz 2007-02-15 09:38 7.7M geneidPep.sql 2007-02-15 09:38 1.1K geneid.txt.gz 2007-02-15 09:38 5.4M geneid.sql 2007-02-15 09:38 1.9K gc5Base.txt.gz 2007-01-19 17:02 14M gc5Base.sql 2007-01-19 17:01 1.7K gbLoaded.txt.gz 2020-08-21 19:02 43K gbLoaded.sql 2020-08-21 19:02 1.6K gap.txt.gz 2007-01-19 17:00 6.7M gap.sql 2007-01-19 17:00 1.5K extFile.txt.gz 2007-06-21 10:45 83 extFile.sql 2007-06-21 10:45 1.3K estOrientInfo.txt.gz 2016-05-15 08:36 13K estOrientInfo.sql 2016-05-15 08:36 1.8K ensemblToGeneName.txt.gz 2012-10-21 03:37 104K ensemblToGeneName.sql 2012-10-21 03:37 1.4K ensemblSource.txt.gz 2012-10-21 03:37 68K ensemblSource.sql 2012-10-21 03:37 1.4K ensemblGeneScaffold.txt.gz 2012-10-21 03:37 818K ensemblGeneScaffold.sql 2012-10-21 03:37 1.7K ensPep.txt.gz 2012-10-21 03:37 4.0M ensPep.sql 2012-10-21 03:37 1.3K ensGtp.txt.gz 2012-10-21 03:37 180K ensGtp.sql 2012-10-21 03:37 1.4K ensGene.txt.gz 2012-10-21 03:37 1.7M ensGene.sql 2012-10-21 03:37 1.9K cpgIslandExtUnmasked.txt.gz 2014-06-01 12:51 1.5M cpgIslandExtUnmasked.sql 2014-06-01 12:51 1.7K cpgIslandExt.txt.gz 2007-01-19 17:00 1.1M cpgIslandExt.sql 2007-01-19 17:00 1.6K contigAcc.txt.gz 2007-01-19 17:00 4.0M contigAcc.sql 2007-01-19 17:00 1.2K chromInfo.txt.gz 2007-01-19 17:00 1.1M chromInfo.sql 2007-01-19 17:00 1.2K chainMm8Link.txt.gz 2007-01-19 16:57 237M chainMm8Link.sql 2007-01-19 16:55 1.4K chainMm8.txt.gz 2007-01-19 16:54 28M chainMm8.sql 2007-01-19 16:54 1.6K chainHg19Link.txt.gz 2009-09-20 09:22 341M chainHg19Link.sql 2009-09-20 09:21 1.5K chainHg19.txt.gz 2009-09-20 09:24 35M chainHg19.sql 2009-09-20 09:24 1.8K chainCanFam2Link.txt.gz 2007-01-19 16:41 522M chainCanFam2Link.sql 2007-01-19 16:35 1.4K chainCanFam2.txt.gz 2007-01-19 16:35 80M chainCanFam2.sql 2007-01-19 16:34 1.7K blastHg18KG.txt.gz 2009-12-20 11:32 1.9M blastHg18KG.sql 2009-12-20 11:32 2.3K bigFiles.txt.gz 2024-11-10 03:28 33 bigFiles.sql 2024-11-10 03:28 1.4K all_mrna.txt.gz 2020-08-21 18:26 232K all_mrna.sql 2020-08-21 18:26 2.1K all_est.txt.gz 2016-05-15 08:36 40K all_est.sql 2016-05-15 08:36 2.1K