This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainCanFam2.sql 2007-01-19 16:34 1.7K
chainCanFam2.txt.gz 2007-01-19 16:35 80M
chainCanFam2Link.sql 2007-01-19 16:35 1.4K
chainCanFam2Link.txt.gz 2007-01-19 16:41 522M
chainMm8.sql 2007-01-19 16:54 1.6K
chainMm8.txt.gz 2007-01-19 16:54 28M
chainMm8Link.sql 2007-01-19 16:55 1.4K
chainMm8Link.txt.gz 2007-01-19 16:57 237M
chromInfo.sql 2007-01-19 17:00 1.2K
chromInfo.txt.gz 2007-01-19 17:00 1.1M
contigAcc.sql 2007-01-19 17:00 1.2K
contigAcc.txt.gz 2007-01-19 17:00 4.0M
cpgIslandExt.sql 2007-01-19 17:00 1.6K
cpgIslandExt.txt.gz 2007-01-19 17:00 1.1M
gap.sql 2007-01-19 17:00 1.5K
gap.txt.gz 2007-01-19 17:00 6.7M
gc5Base.sql 2007-01-19 17:01 1.7K
gc5Base.txt.gz 2007-01-19 17:02 14M
genscan.sql 2007-01-19 17:02 1.6K
genscan.txt.gz 2007-01-19 17:02 2.7M
genscanPep.sql 2007-01-19 17:02 1.2K
genscanPep.txt.gz 2007-01-19 17:02 8.6M
genscanSubopt.sql 2007-01-19 17:02 1.5K
genscanSubopt.txt.gz 2007-01-19 17:02 5.8M
gold.sql 2007-01-19 17:02 1.6K
gold.txt.gz 2007-01-19 17:02 11M
microsat.sql 2007-01-19 17:02 1.3K
microsat.txt.gz 2007-01-19 17:02 658K
netCanFam2.sql 2007-01-19 17:02 2.2K
netCanFam2.txt.gz 2007-01-19 17:03 55M
netMm8.sql 2007-01-19 17:05 2.2K
netMm8.txt.gz 2007-01-19 17:06 41M
quality.sql 2007-01-19 17:06 1.7K
quality.txt.gz 2007-01-19 17:08 70M
rmsk.sql 2007-01-19 17:08 1.9K
rmsk.txt.gz 2007-01-19 17:09 77M
simpleRepeat.sql 2007-01-19 17:10 2.0K
simpleRepeat.txt.gz 2007-01-19 17:10 8.6M
geneid.sql 2007-02-15 09:38 1.9K
geneid.txt.gz 2007-02-15 09:38 5.4M
geneidPep.sql 2007-02-15 09:38 1.1K
geneidPep.txt.gz 2007-02-15 09:38 7.7M
nscanGene.sql 2007-03-14 11:24 2.0K
nscanGene.txt.gz 2007-03-14 11:24 1.5M
nscanPep.sql 2007-03-14 11:24 1.1K
nscanPep.txt.gz 2007-03-14 11:24 4.0M
extFile.sql 2007-06-21 10:45 1.3K
extFile.txt.gz 2007-06-21 10:45 83
multiz4way.sql 2007-06-21 10:45 1.4K
multiz4way.txt.gz 2007-06-21 10:46 61M
multiz4wayFrames.sql 2007-06-21 10:46 1.6K
multiz4wayFrames.txt.gz 2007-06-21 10:47 5.8M
multiz4waySummary.sql 2007-06-21 10:47 1.5K
multiz4waySummary.txt.gz 2007-06-21 10:47 23K
phastCons4way.sql 2007-06-21 10:47 1.7K
phastCons4way.txt.gz 2007-06-21 10:48 49M
phastConsElements4way.sql 2007-06-21 10:48 1.4K
phastConsElements4way.txt.gz 2007-06-21 10:49 3.3M
sgpGene.sql 2007-12-22 12:46 1.9K
sgpGene.txt.gz 2007-12-22 12:46 1.7M
chainHg19Link.sql 2009-09-20 09:21 1.5K
chainHg19Link.txt.gz 2009-09-20 09:22 341M
netHg19.sql 2009-09-20 09:24 2.3K
netHg19.txt.gz 2009-09-20 09:24 55M
chainHg19.sql 2009-09-20 09:24 1.8K
chainHg19.txt.gz 2009-09-20 09:24 35M
blastHg18KG.sql 2009-12-20 11:32 2.3K
blastHg18KG.txt.gz 2009-12-20 11:32 1.9M
history.sql 2010-07-04 15:39 1.6K
history.txt.gz 2010-07-04 15:39 530
tRNAs.sql 2012-04-22 23:54 1.7K
tRNAs.txt.gz 2012-04-22 23:54 69K
ensGene.sql 2012-10-21 03:37 1.9K
ensGene.txt.gz 2012-10-21 03:37 1.7M
ensemblGeneScaffold.sql 2012-10-21 03:37 1.7K
ensemblGeneScaffold.txt.gz 2012-10-21 03:37 818K
ensemblSource.sql 2012-10-21 03:37 1.4K
ensemblSource.txt.gz 2012-10-21 03:37 68K
ensemblToGeneName.sql 2012-10-21 03:37 1.4K
ensemblToGeneName.txt.gz 2012-10-21 03:37 104K
ensGtp.sql 2012-10-21 03:37 1.4K
ensGtp.txt.gz 2012-10-21 03:37 180K
ensPep.sql 2012-10-21 03:37 1.3K
ensPep.txt.gz 2012-10-21 03:37 4.0M
grp.sql 2014-03-02 03:40 1.4K
grp.txt.gz 2014-03-02 03:40 208
cpgIslandExtUnmasked.sql 2014-06-01 12:51 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 12:51 1.5M
xenoMrna.sql 2016-02-21 15:32 2.1K
xenoMrna.txt.gz 2016-02-21 15:34 294M
all_est.sql 2016-05-15 08:36 2.1K
all_est.txt.gz 2016-05-15 08:36 40K
estOrientInfo.sql 2016-05-15 08:36 1.8K
estOrientInfo.txt.gz 2016-05-15 08:36 13K
intronEst.sql 2016-05-15 08:36 2.1K
intronEst.txt.gz 2016-05-15 08:36 15K
all_mrna.sql 2020-08-21 18:26 2.1K
all_mrna.txt.gz 2020-08-21 18:26 232K
refGene.sql 2020-08-21 18:40 1.9K
refGene.txt.gz 2020-08-21 18:40 35K
refFlat.sql 2020-08-21 18:40 1.7K
refFlat.txt.gz 2020-08-21 18:40 32K
xenoRefGene.sql 2020-08-21 18:41 2.0K
xenoRefGene.txt.gz 2020-08-21 18:41 36M
xenoRefFlat.sql 2020-08-21 18:44 1.7K
xenoRefFlat.txt.gz 2020-08-21 18:44 32M
mrnaOrientInfo.sql 2020-08-21 18:44 1.8K
mrnaOrientInfo.txt.gz 2020-08-21 18:44 67K
refSeqAli.sql 2020-08-21 18:45 2.1K
refSeqAli.txt.gz 2020-08-21 18:45 44K
xenoRefSeqAli.sql 2020-08-21 19:00 2.1K
xenoRefSeqAli.txt.gz 2020-08-21 19:00 37M
gbLoaded.sql 2020-08-21 19:02 1.6K
gbLoaded.txt.gz 2020-08-21 19:02 43K
trackDb.sql 2023-03-28 13:49 2.1K
trackDb.txt.gz 2023-03-28 13:49 39K
hgFindSpec.sql 2023-03-28 13:49 1.8K
hgFindSpec.txt.gz 2023-03-28 13:49 1.0K
tableDescriptions.sql 2024-12-07 02:03 1.5K
tableDescriptions.txt.gz 2024-12-07 02:03 6.0K
tableList.sql 2024-12-08 03:32 1.6K
tableList.txt.gz 2024-12-08 03:32 3.5K
bigFiles.sql 2024-12-08 03:32 1.4K
bigFiles.txt.gz 2024-12-08 03:32 33