This directory contains a dump of the annotation database for
the Release 1.0 assembly of the Drosophila simulans genome
(droSim1, Apr. 2005) produced by the Genome Sequencing Center
at the Washington University St. Louis School of Medicine. The
annotations were generated by UCSC and collaborators worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droSim1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/droSim1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-21 03:28 33
chrM_gap.txt.gz 2005-06-10 15:56 33
chr4_mrna.txt.gz 2016-12-18 07:03 34
chrM_mrna.txt.gz 2016-12-18 07:03 34
chrM_intronEst.txt.gz 2016-12-18 07:03 39
chr4_random_mrna.txt.gz 2016-12-18 07:03 41
chr2L_random_mrna.txt.gz 2016-12-18 07:03 42
chr3R_random_mrna.txt.gz 2016-12-18 07:03 42
chr3h_random_mrna.txt.gz 2016-12-18 07:03 42
chrXh_random_mrna.txt.gz 2016-12-18 07:03 42
chrYh_random_mrna.txt.gz 2016-12-18 07:03 42
chrYh_random_intronEst.txt.gz 2016-12-18 07:03 47
chrYh_random_est.txt.gz 2016-12-18 07:03 161
chr3L_random_mrna.txt.gz 2016-12-18 07:03 175
chr2R_random_mrna.txt.gz 2016-12-18 07:02 191
chromInfo.txt.gz 2005-06-10 15:57 220
grp.txt.gz 2014-03-02 03:40 223
chr2h_random_mrna.txt.gz 2016-12-18 07:03 244
chrXh_random_gap.txt.gz 2005-06-10 15:57 300
extFile.txt.gz 2005-06-10 15:57 313
gbDelete_tmp.sql 2013-10-01 12:48 326
genscanPep.sql 2013-10-01 12:48 330
history.txt.gz 2005-06-10 15:58 330
chrXh_random_gold.txt.gz 2005-06-10 15:57 372
chrYh_random_gap.txt.gz 2005-06-10 15:57 379
chromInfo.sql 2013-10-01 12:48 396
extFile.sql 2013-10-01 12:48 445
chr4_random_gap.txt.gz 2005-06-10 15:56 456
chrYh_random_gold.txt.gz 2005-06-10 15:57 491
chrXh_random_intronEst.txt.gz 2016-12-18 07:03 492
history.sql 2013-10-01 12:48 537
gcPercent.sql 2013-10-01 12:48 546
chrM_gap.sql 2013-10-01 12:48 615
chrX_random_mrna.txt.gz 2016-12-18 07:03 627
dmRefGene.sql 2013-10-01 12:48 663
hgFindSpec_pushedout.txt.gz 2021-08-02 14:28 667
chr4_gap.sql 2013-10-01 12:48 704
chrU_gap.sql 2013-10-01 12:48 704
chrX_gap.sql 2013-10-01 12:48 704
hgFindSpec.txt.gz 2023-03-28 13:48 705
chr2L_gap.sql 2013-10-01 12:48 706
chr2R_gap.sql 2013-10-01 12:48 706
chr3L_gap.sql 2013-10-01 12:48 706
chr3R_gap.sql 2013-10-01 12:48 706
chr4_random_gap.sql 2013-10-01 12:48 718
chrX_random_gap.sql 2013-10-01 12:48 718
chr2L_random_gap.sql 2013-10-01 12:48 720
chr2R_random_gap.sql 2013-10-01 12:48 720
chr2h_random_gap.sql 2013-10-01 12:48 720
chr3L_random_gap.sql 2013-10-01 12:48 720
chr3R_random_gap.sql 2013-10-01 12:48 720
chr3h_random_gap.sql 2013-10-01 12:48 720
chrXh_random_gap.sql 2013-10-01 12:48 720
chrYh_random_gap.sql 2013-10-01 12:48 720
genscan.sql 2013-10-01 12:48 746
chr4_gold.sql 2013-10-01 12:48 781
chrU_gold.sql 2013-10-01 12:48 781
chrX_gold.sql 2013-10-01 12:48 781
chr2L_gold.sql 2013-10-01 12:48 783
chr2R_gold.sql 2013-10-01 12:48 783
chr3L_gold.sql 2013-10-01 12:48 783
chr3R_gold.sql 2013-10-01 12:48 783
chrU_mrna.txt.gz 2016-12-18 07:03 786
chr4_random_gold.sql 2013-10-01 12:48 795
chrX_random_gold.sql 2013-10-01 12:48 795
chr2L_random_gold.sql 2013-10-01 12:48 797
chr2R_random_gold.sql 2013-10-01 12:48 797
chr2h_random_gold.sql 2013-10-01 12:48 797
chr3L_random_gold.sql 2013-10-01 12:48 797
chr3R_random_gold.sql 2013-10-01 12:48 797
chr3h_random_gold.sql 2013-10-01 12:48 797
chrXh_random_gold.sql 2013-10-01 12:48 797
chrYh_random_gold.sql 2013-10-01 12:48 797
chr4_random_gold.txt.gz 2005-06-10 15:56 952
chrM_rmsk.txt.gz 2005-06-10 15:56 1.0K
chr4_random_intronEst.txt.gz 2016-12-18 07:03 1.0K
geneid.sql 2013-10-01 12:48 1.0K
chr4_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrU_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chr2L_rmsk.sql 2013-10-01 12:48 1.0K
chr2R_rmsk.sql 2013-10-01 12:48 1.0K
chr3L_rmsk.sql 2013-10-01 12:48 1.0K
chr3R_rmsk.sql 2013-10-01 12:48 1.0K
microsat.txt.gz 2015-08-23 15:16 1.0K
chr4_random_rmsk.sql 2013-10-01 12:48 1.1K
chrX_random_rmsk.sql 2013-10-01 12:48 1.1K
chr2L_random_rmsk.sql 2013-10-01 12:48 1.1K
chr2R_random_rmsk.sql 2013-10-01 12:48 1.1K
chr2h_random_rmsk.sql 2013-10-01 12:48 1.1K
chr3L_random_rmsk.sql 2013-10-01 12:48 1.1K
chr3R_random_rmsk.sql 2013-10-01 12:48 1.1K
chr3h_random_rmsk.sql 2013-10-01 12:48 1.1K
chrXh_random_rmsk.sql 2013-10-01 12:48 1.1K
chrYh_random_rmsk.sql 2013-10-01 12:48 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chrX_mrna.txt.gz 2016-12-18 07:03 1.2K
blastDm2FB.sql 2013-10-01 12:48 1.3K
chrXh_random_est.txt.gz 2016-12-18 07:03 1.3K
grp.sql 2014-03-02 03:40 1.4K
bigFiles.sql 2024-04-21 03:28 1.4K
tableDescriptions.sql 2024-04-20 02:03 1.5K
chr3L_mrna.txt.gz 2016-12-18 07:03 1.5K
microsat.sql 2015-08-23 15:16 1.5K
chainDm6Link.sql 2014-12-14 12:57 1.5K
tableList.sql 2024-04-21 03:28 1.6K
gbLoaded.sql 2020-08-19 04:20 1.6K
chainDm6.sql 2014-12-14 12:57 1.7K
xenoRefFlat.sql 2020-08-19 04:11 1.7K
hgFindSpec.sql 2023-03-28 13:48 1.8K
estOrientInfo.sql 2016-12-18 07:03 1.8K
mrnaOrientInfo.sql 2018-08-05 06:24 1.8K
chr4_random_est.txt.gz 2016-12-18 07:03 1.8K
hgFindSpec_pushedout.sql 2021-08-02 14:28 1.8K
chr2R_mrna.txt.gz 2018-08-05 06:23 1.8K
chr2L_mrna.txt.gz 2017-09-03 05:24 1.9K
chr3R_mrna.txt.gz 2016-12-18 07:03 1.9K
chr4_gap.txt.gz 2005-06-10 15:56 1.9K
augustusGene.sql 2015-07-26 13:01 1.9K
xenoRefGene.sql 2020-08-19 03:57 2.0K
trackDb.sql 2023-03-28 13:48 2.1K
trackDb_pushedout.sql 2021-08-02 14:28 2.1K
netDm6.sql 2014-12-14 12:57 2.1K
chr4_est.sql 2016-12-18 07:03 2.1K
chrM_est.sql 2016-12-18 07:03 2.1K
chrU_est.sql 2016-12-18 07:03 2.1K
chrX_est.sql 2016-12-18 07:03 2.1K
chr2L_est.sql 2016-12-18 07:03 2.1K
chr2R_est.sql 2016-12-18 07:03 2.1K
chr3L_est.sql 2016-12-18 07:03 2.1K
chr3R_est.sql 2016-12-18 07:03 2.1K
chr4_mrna.sql 2016-12-18 07:03 2.1K
chrM_mrna.sql 2016-12-18 07:03 2.1K
chrU_mrna.sql 2016-12-18 07:03 2.1K
chrX_mrna.sql 2016-12-18 07:03 2.1K
chr2L_mrna.sql 2017-09-03 05:24 2.1K
chr2R_mrna.sql 2018-08-05 06:23 2.1K
chr3L_mrna.sql 2016-12-18 07:03 2.1K
chr3R_mrna.sql 2016-12-18 07:03 2.1K
all_est.sql 2016-12-18 07:03 2.1K
all_mrna.sql 2018-08-05 06:23 2.1K
chr4_intronEst.sql 2016-12-18 07:03 2.1K
chrM_intronEst.sql 2016-12-18 07:03 2.1K
chrU_intronEst.sql 2016-12-18 07:03 2.1K
chrX_intronEst.sql 2016-12-18 07:03 2.1K
chr2L_intronEst.sql 2016-12-18 07:03 2.1K
chr2R_intronEst.sql 2016-12-18 07:03 2.1K
chr3L_intronEst.sql 2016-12-18 07:03 2.1K
chr3R_intronEst.sql 2016-12-18 07:03 2.1K
chr4_random_est.sql 2016-12-18 07:03 2.1K
chrX_random_est.sql 2016-12-18 07:03 2.1K
chrXh_random_rmsk.txt.gz 2005-06-10 15:57 2.1K
chr2L_random_est.sql 2016-12-18 07:03 2.1K
chr2R_random_est.sql 2016-12-18 07:03 2.1K
chr2h_random_est.sql 2016-12-18 07:03 2.1K
chr3L_random_est.sql 2016-12-18 07:03 2.1K
chr3R_random_est.sql 2016-12-18 07:03 2.1K
chr3h_random_est.sql 2016-12-18 07:03 2.1K
chr4_random_mrna.sql 2016-12-18 07:03 2.1K
chrX_random_mrna.sql 2016-12-18 07:03 2.1K
chrXh_random_est.sql 2016-12-18 07:03 2.1K
chrYh_random_est.sql 2016-12-18 07:03 2.1K
chr2L_random_mrna.sql 2016-12-18 07:03 2.1K
chr2R_random_mrna.sql 2016-12-18 07:02 2.1K
chr2h_random_mrna.sql 2016-12-18 07:03 2.1K
chr3L_random_mrna.sql 2016-12-18 07:03 2.1K
chr3R_random_mrna.sql 2016-12-18 07:03 2.1K
chr3h_random_mrna.sql 2016-12-18 07:03 2.1K
chrXh_random_mrna.sql 2016-12-18 07:03 2.1K
chrYh_random_mrna.sql 2016-12-18 07:03 2.1K
xenoMrna.sql 2020-08-19 03:41 2.1K
chr4_random_intronEst.sql 2016-12-18 07:03 2.1K
chrX_random_intronEst.sql 2016-12-18 07:03 2.1K
chr2L_random_intronEst.sql 2016-12-18 07:03 2.1K
chr2R_random_intronEst.sql 2016-12-18 07:03 2.1K
chr2h_random_intronEst.sql 2016-12-18 07:03 2.1K
chr3L_random_intronEst.sql 2016-12-18 07:03 2.1K
chr3R_random_intronEst.sql 2016-12-18 07:03 2.1K
chr3h_random_intronEst.sql 2016-12-18 07:03 2.1K
chrXh_random_intronEst.sql 2016-12-18 07:03 2.1K
chrYh_random_intronEst.sql 2016-12-18 07:03 2.1K
xenoRefSeqAli.sql 2020-08-19 04:11 2.1K
chr2L_random_gap.txt.gz 2005-06-10 15:56 3.0K
chr4_random_rmsk.txt.gz 2005-06-10 15:56 3.0K
mrnaOrientInfo.txt.gz 2018-08-05 06:24 3.1K
chrYh_random_rmsk.txt.gz 2005-06-10 15:57 3.2K
chr3h_random_gap.txt.gz 2005-06-10 15:56 3.5K
chr3L_random_gap.txt.gz 2005-06-10 15:56 3.7K
chr3R_random_gap.txt.gz 2005-06-10 15:56 4.7K
tableDescriptions.txt.gz 2024-04-20 02:03 4.8K
chr2L_random_gold.txt.gz 2005-06-10 15:56 4.8K
chr3h_random_gold.txt.gz 2005-06-10 15:56 5.1K
chr4_gold.txt.gz 2005-06-10 15:56 5.4K
chr3L_random_gold.txt.gz 2005-06-10 15:56 6.4K
chr2L_random_intronEst.txt.gz 2016-12-18 07:03 6.7K
chr2h_random_gap.txt.gz 2005-06-10 15:56 7.1K
chr3L_random_intronEst.txt.gz 2016-12-18 07:03 7.3K
chr3R_random_gold.txt.gz 2005-06-10 15:56 7.8K
tableList.txt.gz 2024-04-21 03:28 8.1K
chr2L_random_rmsk.txt.gz 2005-06-10 15:56 8.6K
chr3h_random_intronEst.txt.gz 2016-12-18 07:03 9.0K
all_mrna.txt.gz 2018-08-05 06:23 9.8K
chr3L_random_rmsk.txt.gz 2005-06-10 15:56 10K
chr2R_random_gap.txt.gz 2005-06-10 15:56 10K
chr2h_random_gold.txt.gz 2005-06-10 15:56 11K
chr3h_random_est.txt.gz 2016-12-18 07:03 12K
chr3R_random_intronEst.txt.gz 2016-12-18 07:03 13K
chr3R_random_rmsk.txt.gz 2005-06-10 15:56 13K
chr2L_random_est.txt.gz 2016-12-18 07:03 14K
chr2h_random_intronEst.txt.gz 2016-12-18 07:03 15K
chr4_intronEst.txt.gz 2016-12-18 07:03 15K
chr2R_random_gold.txt.gz 2005-06-10 15:56 17K
chr3L_random_est.txt.gz 2016-12-18 07:03 17K
chrX_random_gap.txt.gz 2005-06-10 15:57 20K
chr2R_gap.txt.gz 2005-06-10 15:56 21K
chr2L_gap.txt.gz 2005-06-10 15:56 22K
trackDb_pushedout.txt.gz 2021-08-02 14:28 22K
chrU_intronEst.txt.gz 2016-12-18 07:03 23K
chr3L_gap.txt.gz 2005-06-10 15:56 23K
chr2h_random_est.txt.gz 2016-12-18 07:03 24K
trackDb.txt.gz 2023-03-28 13:48 24K
chr2R_random_intronEst.txt.gz 2016-12-18 07:03 25K
chr4_rmsk.txt.gz 2005-06-10 15:56 25K
chr3R_gap.txt.gz 2005-06-10 15:56 25K
chr4_est.txt.gz 2016-12-18 07:03 26K
chrM_est.txt.gz 2016-12-18 07:03 28K
chrX_gap.txt.gz 2005-06-10 15:57 30K
chr3R_random_est.txt.gz 2016-12-18 07:03 33K
chrX_random_gold.txt.gz 2005-06-10 15:57 35K
gbLoaded.txt.gz 2020-08-19 04:20 36K
chr2R_random_rmsk.txt.gz 2005-06-10 15:56 37K
gcPercent.txt.gz 2005-06-10 15:58 41K
chrX_random_intronEst.txt.gz 2016-12-18 07:03 46K
chr3h_random_rmsk.txt.gz 2005-06-10 15:56 51K
chr2R_random_est.txt.gz 2016-12-18 07:03 60K
chrX_random_rmsk.txt.gz 2005-06-10 15:57 75K
chr2R_gold.txt.gz 2005-06-10 15:56 80K
chr2L_gold.txt.gz 2005-06-10 15:56 81K
chr3L_gold.txt.gz 2005-06-10 15:56 88K
chrU_gap.txt.gz 2005-06-10 15:57 94K
chrX_gold.txt.gz 2005-06-10 15:57 99K
chr3R_gold.txt.gz 2005-06-10 15:56 104K
chrX_random_est.txt.gz 2016-12-18 07:03 108K
chr2h_random_rmsk.txt.gz 2005-06-10 15:56 109K
chrU_est.txt.gz 2016-12-18 07:03 111K
chrU_gold.txt.gz 2005-06-10 15:57 136K
chrX_intronEst.txt.gz 2016-12-18 07:03 148K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
chr2R_rmsk.txt.gz 2005-06-10 15:56 198K
chr2L_rmsk.txt.gz 2005-06-10 15:56 224K
chrX_rmsk.txt.gz 2005-06-10 15:57 248K
chr3L_rmsk.txt.gz 2005-06-10 15:56 250K
chr3R_rmsk.txt.gz 2005-06-10 15:56 264K
chr3L_intronEst.txt.gz 2016-12-18 07:03 317K
chrX_est.txt.gz 2016-12-18 07:03 326K
chr2L_intronEst.txt.gz 2016-12-18 07:03 360K
chr2R_intronEst.txt.gz 2016-12-18 07:03 396K
chr3R_intronEst.txt.gz 2016-12-18 07:03 446K
chrU_rmsk.txt.gz 2005-06-10 15:57 533K
simpleRepeat.txt.gz 2005-06-10 15:58 603K
chr3L_est.txt.gz 2016-12-18 07:03 625K
chr2L_est.txt.gz 2016-12-18 07:03 679K
genscan.txt.gz 2005-06-10 15:58 689K
geneid.txt.gz 2005-09-23 04:49 731K
augustusGene.txt.gz 2015-07-26 13:01 743K
chr2R_est.txt.gz 2016-12-18 07:03 752K
dmRefGene.txt.gz 2005-06-10 15:57 810K
chr3R_est.txt.gz 2016-12-18 07:03 823K
blastDm2FB.txt.gz 2005-07-28 05:23 900K
estOrientInfo.txt.gz 2016-12-18 07:03 1.1M
netDm6.txt.gz 2014-12-14 12:57 2.8M
all_est.txt.gz 2016-12-18 07:03 3.6M
genscanPep.txt.gz 2005-06-10 15:58 4.3M
chainDm6.txt.gz 2014-12-14 12:57 11M
xenoRefFlat.txt.gz 2020-08-19 04:11 13M
xenoRefGene.txt.gz 2020-08-19 03:57 15M
xenoRefSeqAli.txt.gz 2020-08-19 04:11 15M
chainDm6Link.txt.gz 2014-12-14 12:57 56M
xenoMrna.txt.gz 2020-08-19 03:41 137M