This directory contains the Drosophila ananassae 1 August 2005 assembly from Agencourt. The annotations are from UCSC and collaborators worldwide. If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/droAna2/bigZips. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------------ md5sum.txt - MD5 checksum of these files to verify correct transmission. droAna2.2bit - contains the complete D. ananassae/droAna2 genome sequence in the 2bit file format. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case. The utility program, twoBitToFa (available from the kent src tree), can be used to extract .fa file(s) from this file. A pre-compiled version of the command line tool can be found at: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ See also: http://genome.ucsc.edu/admin/git.html http://genome.ucsc.edu/admin/jk-install.html mrna.fa.gz - D. ananassae mRNA from GenBank. This sequence data is updated once a week via automatic GenBank updates. scaffoldFa.gz - The working draft sequence in one FASTA record per scaffold. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are in lower case while non-repeating sequence is in upper case. scaffoldFaMasked.gz - The working draft sequence in one FASTA record per scaffold. Repeats are masked by capital N's and non-repeating sequence is shown in upper case. scaffoldOut.gz - RepeatMasker .out file for scaffolds. These were created with RepeatMasker at the -s sensitive setting. scaffoldTrf.gz - Tandem Repeats Finder locations, filtered to keep repeats with period less than or equal to 12, translated into one .bed file.
Name Last modified Size Description
Parent Directory - droAna2.2bit 2005-08-05 08:39 57M droAna2.chrom.sizes 2005-08-05 08:39 259K droAna2.fa.gz 2020-01-23 02:21 63M md5sum.txt 2014-01-03 16:59 247 mrna.fa.gz 2020-02-27 05:51 29K mrna.fa.gz.md5 2020-02-27 05:51 45 scaffoldFa.gz 2005-08-05 10:04 63M scaffoldFaMasked.gz 2010-05-12 15:09 53M scaffoldOut.gz 2005-08-05 10:03 4.9M scaffoldTrf.gz 2005-08-05 10:04 472K xenoMrna.fa.gz 2016-03-19 00:07 5.0G xenoMrna.fa.gz.md5 2016-03-19 00:07 49 xenoRefMrna.fa.gz 2020-02-27 05:51 337M xenoRefMrna.fa.gz.md5 2020-02-27 05:51 52