This directory contains the Drosophila pseudoobscura Flybase 
Release 1.0 assembly (Nov. 2004).  
The annotations are from UCSC, Flybase and collaborators worldwide.

Files are updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=dp3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/dp3/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose.

      Name                              Last modified      Size  Description
Parent Directory - xenoRefSeqAli.txt.gz 2020-08-19 00:44 7.1M xenoRefSeqAli.sql 2020-08-19 00:44 2.1K xenoRefGene.txt.gz 2020-08-19 00:44 7.8M xenoRefGene.sql 2020-08-19 00:44 1.9K xenoRefFlat.txt.gz 2020-08-19 00:44 7.1M xenoRefFlat.sql 2020-08-19 00:44 1.7K xenoMrna.txt.gz 2016-02-21 13:54 89M xenoMrna.sql 2016-02-21 13:53 2.1K twinscan.txt.gz 2005-06-24 12:22 622K twinscan.sql 2013-10-01 12:48 746 trackDb_pushedout.txt.gz 2021-08-02 14:24 18K trackDb_pushedout.sql 2021-08-02 14:24 2.1K trackDb.txt.gz 2023-03-28 13:48 21K trackDb.sql 2023-03-28 13:48 2.1K tableList.txt.gz 2024-04-14 03:30 8.1K tableList.sql 2024-04-14 03:30 1.6K tableDescriptions.txt.gz 2024-04-13 02:03 4.7K tableDescriptions.sql 2024-04-13 02:03 1.5K simpleRepeat.txt.gz 2005-06-24 12:22 1.4M simpleRepeat.sql 2013-10-01 12:48 1.1K netDm3.txt.gz 2007-07-14 10:30 7.6M netDm3.sql 2007-07-14 10:30 2.2K mrnaOrientInfo.txt.gz 2017-10-22 06:27 2.2K mrnaOrientInfo.sql 2017-10-22 06:27 1.8K microsat.txt.gz 2015-08-23 14:22 8.7K microsat.sql 2015-08-23 14:22 1.5K history.txt.gz 2005-06-24 12:21 470 history.sql 2013-10-01 12:48 533 hgFindSpec_pushedout.txt.gz 2021-08-02 14:24 940 hgFindSpec_pushedout.sql 2021-08-02 14:24 1.8K hgFindSpec.txt.gz 2023-03-28 13:48 1.0K hgFindSpec.sql 2023-03-28 13:48 1.8K grp.txt.gz 2014-03-02 03:40 223 grp.sql 2014-03-02 03:40 1.4K genscanPep.txt.gz 2005-06-24 12:21 4.7M genscanPep.sql 2013-10-01 12:48 326 genscan.txt.gz 2005-06-24 12:21 716K genscan.sql 2013-10-01 12:48 744 genewise.txt.gz 2005-06-24 12:21 546K genewise.sql 2013-10-01 12:48 746 geneid.txt.gz 2005-09-23 04:49 723K geneid.sql 2013-10-01 12:48 1.0K gcPercent.txt.gz 2005-06-24 12:21 40K gcPercent.sql 2013-10-01 12:48 506 gbLoaded.txt.gz 2020-08-19 00:44 43K gbLoaded.sql 2020-08-19 00:44 1.6K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K gbDelete_tmp.sql 2013-10-01 12:48 322 flyBasePep.txt.gz 2005-06-24 12:20 2.9M flyBasePep.sql 2013-10-01 12:48 326 flyBaseGene.txt.gz 2005-06-24 12:20 402K flyBaseGene.sql 2013-10-01 12:48 752 flyBase2004Xref.txt.gz 2005-06-24 12:20 97K flyBase2004Xref.sql 2013-10-01 12:48 730 fbGenscan.txt.gz 2005-06-24 12:20 868K fbGenscan.sql 2013-10-01 12:48 1.0K estOrientInfo.txt.gz 2016-06-05 10:02 362K estOrientInfo.sql 2016-06-05 10:02 1.8K chromInfo.txt.gz 2005-06-24 12:20 209 chromInfo.sql 2013-10-01 12:48 392 chrXR_group9_rmsk.txt.gz 2005-06-24 12:20 148K chrXR_group9_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group9_mrna.txt.gz 2016-05-15 08:25 250 chrXR_group9_mrna.sql 2016-05-15 08:25 2.1K chrXR_group9_intronEst.txt.gz 2016-05-15 08:25 55K chrXR_group9_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group9_gap.txt.gz 2005-06-24 12:20 4.1K chrXR_group9_gap.sql 2013-10-01 12:48 716 chrXR_group9_est.txt.gz 2016-06-05 10:02 91K chrXR_group9_est.sql 2016-06-05 10:02 2.1K chrXR_group9_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M chrXR_group9_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group9_chainDm3.txt.gz 2007-07-14 10:31 199K chrXR_group9_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group8_rmsk.txt.gz 2005-06-24 12:20 198K chrXR_group8_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group8_mrna.txt.gz 2016-06-05 10:02 2.0K chrXR_group8_mrna.sql 2016-06-05 10:02 2.1K chrXR_group8_intronEst.txt.gz 2016-06-05 10:02 92K chrXR_group8_intronEst.sql 2016-06-05 10:02 2.1K chrXR_group8_gap.txt.gz 2005-06-24 12:20 5.2K chrXR_group8_gap.sql 2013-10-01 12:48 716 chrXR_group8_est.txt.gz 2016-06-05 10:02 144K chrXR_group8_est.sql 2016-06-05 10:02 2.1K chrXR_group8_chainDm3Link.txt.gz 2007-07-14 10:31 3.0M chrXR_group8_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group8_chainDm3.txt.gz 2007-07-14 10:31 292K chrXR_group8_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group6_rmsk.txt.gz 2005-06-24 12:20 136K chrXR_group6_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group6_mrna.txt.gz 2016-09-18 07:51 620 chrXR_group6_mrna.sql 2016-09-18 07:51 2.1K chrXR_group6_intronEst.txt.gz 2016-05-15 08:25 60K chrXR_group6_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group6_gap.txt.gz 2005-06-24 12:20 3.4K chrXR_group6_gap.sql 2013-10-01 12:48 716 chrXR_group6_est.txt.gz 2016-06-05 10:02 90K chrXR_group6_est.sql 2016-06-05 10:02 2.1K chrXR_group6_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M chrXR_group6_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group6_chainDm3.txt.gz 2007-07-14 10:31 270K chrXR_group6_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group5_rmsk.txt.gz 2005-06-24 12:19 16K chrXR_group5_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group5_mrna.txt.gz 2016-05-15 08:25 42 chrXR_group5_mrna.sql 2016-05-15 08:25 2.1K chrXR_group5_intronEst.txt.gz 2016-05-15 08:25 8.0K chrXR_group5_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group5_gap.txt.gz 2005-06-24 12:19 488 chrXR_group5_gap.sql 2013-10-01 12:48 716 chrXR_group5_est.txt.gz 2016-05-15 08:25 13K chrXR_group5_est.sql 2016-05-15 08:25 2.1K chrXR_group5_chainDm3Link.txt.gz 2007-07-14 10:31 246K chrXR_group5_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group5_chainDm3.txt.gz 2007-07-14 10:31 19K chrXR_group5_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group3a_rmsk.txt.gz 2005-06-24 12:19 32K chrXR_group3a_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group3a_mrna.txt.gz 2016-05-15 08:25 107 chrXR_group3a_mrna.sql 2016-05-15 08:25 2.1K chrXR_group3a_intronEst.txt.gz 2016-05-15 08:25 30K chrXR_group3a_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group3a_gap.txt.gz 2005-06-24 12:19 1.0K chrXR_group3a_gap.sql 2013-10-01 12:48 718 chrXR_group3a_est.txt.gz 2016-05-15 08:25 44K chrXR_group3a_est.sql 2016-05-15 08:25 2.1K chrXR_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 514K chrXR_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group3a_chainDm3.txt.gz 2007-07-14 10:31 52K chrXR_group3a_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group3b_rmsk.txt.gz 2005-06-24 12:19 9.2K chrXL_group3b_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group3b_mrna.txt.gz 2016-05-15 08:25 150 chrXL_group3b_mrna.sql 2016-05-15 08:25 2.1K chrXL_group3b_intronEst.txt.gz 2016-05-15 08:25 1.5K chrXL_group3b_intronEst.sql 2016-05-15 08:25 2.1K chrXL_group3b_gap.txt.gz 2005-06-24 12:19 417 chrXL_group3b_gap.sql 2013-10-01 12:48 718 chrXL_group3b_est.txt.gz 2016-05-15 08:25 3.5K chrXL_group3b_est.sql 2016-05-15 08:25 2.1K chrXL_group3b_chainDm3Link.txt.gz 2007-07-14 10:31 146K chrXL_group3b_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group3b_chainDm3.txt.gz 2007-07-14 10:31 18K chrXL_group3b_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group3a_rmsk.txt.gz 2005-06-24 12:19 50K chrXL_group3a_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group3a_mrna.txt.gz 2016-05-15 08:25 155 chrXL_group3a_mrna.sql 2016-05-15 08:25 2.1K chrXL_group3a_intronEst.txt.gz 2016-05-15 08:25 21K chrXL_group3a_intronEst.sql 2016-05-15 08:25 2.1K chrXL_group3a_gap.txt.gz 2005-06-24 12:19 1.9K chrXL_group3a_gap.sql 2013-10-01 12:48 718 chrXL_group3a_est.txt.gz 2016-06-05 10:02 28K chrXL_group3a_est.sql 2016-06-05 10:02 2.1K chrXL_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 859K chrXL_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group3a_chainDm3.txt.gz 2007-07-14 10:31 92K chrXL_group3a_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group1e_rmsk.txt.gz 2005-06-24 12:19 261K chrXL_group1e_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group1e_mrna.txt.gz 2016-05-15 08:25 701 chrXL_group1e_mrna.sql 2016-05-15 08:25 2.1K chrXL_group1e_intronEst.txt.gz 2016-06-05 10:02 122K chrXL_group1e_intronEst.sql 2016-06-05 10:02 2.1K chrXL_group1e_gap.txt.gz 2005-06-24 12:19 7.0K chrXL_group1e_gap.sql 2013-10-01 12:48 718 chrXL_group1e_est.txt.gz 2016-06-05 10:02 189K chrXL_group1e_est.sql 2016-06-05 10:02 2.1K chrXL_group1e_chainDm3Link.txt.gz 2007-07-14 10:31 4.0M chrXL_group1e_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group1e_chainDm3.txt.gz 2007-07-14 10:31 557K chrXL_group1e_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group1a_rmsk.txt.gz 2005-06-24 12:19 195K chrXL_group1a_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group1a_mrna.txt.gz 2016-09-18 07:51 943 chrXL_group1a_mrna.sql 2016-09-18 07:51 2.1K chrXL_group1a_intronEst.txt.gz 2016-05-15 08:25 89K chrXL_group1a_intronEst.sql 2016-05-15 08:25 2.1K chrXL_group1a_gap.txt.gz 2005-06-24 12:19 5.7K chrXL_group1a_gap.sql 2013-10-01 12:48 718 chrXL_group1a_est.txt.gz 2016-06-05 10:02 138K chrXL_group1a_est.sql 2016-06-05 10:02 2.1K chrXL_group1a_chainDm3Link.txt.gz 2007-07-14 10:31 3.1M chrXL_group1a_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group1a_chainDm3.txt.gz 2007-07-14 10:31 375K chrXL_group1a_chainDm3.sql 2007-07-14 10:31 1.7K chrU_rmsk.txt.gz 2005-06-24 12:19 298K chrU_rmsk.sql 2013-10-01 12:48 1.0K chrU_mrna.txt.gz 2016-05-15 08:25 681 chrU_mrna.sql 2016-05-15 08:25 2.1K chrU_intronEst.txt.gz 2016-06-05 10:02 40K chrU_intronEst.sql 2016-06-05 10:02 2.1K chrU_gap.txt.gz 2005-06-24 12:19 14K chrU_gap.sql 2013-10-01 12:48 700 chrU_est.txt.gz 2016-06-05 10:02 102K chrU_est.sql 2016-06-05 10:02 2.1K chrU_chainDm3Link.txt.gz 2007-07-14 10:31 14M chrU_chainDm3Link.sql 2007-07-14 10:30 1.4K chrU_chainDm3.txt.gz 2007-07-14 10:30 2.0M chrU_chainDm3.sql 2007-07-14 10:30 1.6K chr4_group5_rmsk.txt.gz 2005-06-24 12:19 38K chr4_group5_rmsk.sql 2013-10-01 12:48 1.1K chr4_group5_mrna.txt.gz 2016-05-15 08:25 41 chr4_group5_mrna.sql 2016-05-15 08:25 2.1K chr4_group5_intronEst.txt.gz 2016-05-15 08:25 23K chr4_group5_intronEst.sql 2016-05-15 08:25 2.1K chr4_group5_gap.txt.gz 2005-06-24 12:19 861 chr4_group5_gap.sql 2013-10-01 12:48 714 chr4_group5_est.txt.gz 2016-05-15 08:25 39K chr4_group5_est.sql 2016-05-15 08:25 2.1K chr4_group5_chainDm3Link.txt.gz 2007-07-14 10:30 713K chr4_group5_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group5_chainDm3.txt.gz 2007-07-14 10:30 77K chr4_group5_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group4_rmsk.txt.gz 2005-06-24 12:19 92K chr4_group4_rmsk.sql 2013-10-01 12:48 1.1K chr4_group4_mrna.txt.gz 2016-05-15 08:25 221 chr4_group4_mrna.sql 2016-05-15 08:25 2.1K chr4_group4_intronEst.txt.gz 2016-05-15 08:25 66K chr4_group4_intronEst.sql 2016-05-15 08:25 2.1K chr4_group4_gap.txt.gz 2005-06-24 12:19 3.3K chr4_group4_gap.sql 2013-10-01 12:48 714 chr4_group4_est.txt.gz 2016-06-05 10:02 93K chr4_group4_est.sql 2016-06-05 10:02 2.1K chr4_group4_chainDm3Link.txt.gz 2007-07-14 10:30 1.9M chr4_group4_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group4_chainDm3.txt.gz 2007-07-14 10:30 176K chr4_group4_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group3_rmsk.txt.gz 2005-06-24 12:19 179K chr4_group3_rmsk.sql 2013-10-01 12:48 1.1K chr4_group3_mrna.txt.gz 2016-09-18 07:51 707 chr4_group3_mrna.sql 2016-09-18 07:51 2.1K chr4_group3_intronEst.txt.gz 2016-06-05 10:02 98K chr4_group3_intronEst.sql 2016-06-05 10:02 2.1K chr4_group3_gap.txt.gz 2005-06-24 12:19 4.6K chr4_group3_gap.sql 2013-10-01 12:48 714 chr4_group3_est.txt.gz 2016-06-05 10:02 156K chr4_group3_est.sql 2016-06-05 10:02 2.1K chr4_group3_chainDm3Link.txt.gz 2007-07-14 10:30 4.1M chr4_group3_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group3_chainDm3.txt.gz 2007-07-14 10:30 609K chr4_group3_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group2_rmsk.txt.gz 2005-06-24 12:19 19K chr4_group2_rmsk.sql 2013-10-01 12:48 1.1K chr4_group2_mrna.txt.gz 2016-05-15 08:25 41 chr4_group2_mrna.sql 2016-05-15 08:25 2.1K chr4_group2_intronEst.txt.gz 2016-05-15 08:25 7.4K chr4_group2_intronEst.sql 2016-05-15 08:25 2.1K chr4_group2_gap.txt.gz 2005-06-24 12:19 805 chr4_group2_gap.sql 2013-10-01 12:48 714 chr4_group2_est.txt.gz 2016-06-05 10:02 15K chr4_group2_est.sql 2016-06-05 10:02 2.1K chr4_group2_chainDm3Link.txt.gz 2007-07-14 10:30 514K chr4_group2_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group2_chainDm3.txt.gz 2007-07-14 10:30 63K chr4_group2_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group1_rmsk.txt.gz 2005-06-24 12:19 89K chr4_group1_rmsk.sql 2013-10-01 12:48 1.1K chr4_group1_mrna.txt.gz 2016-05-15 08:25 215 chr4_group1_mrna.sql 2016-05-15 08:25 2.1K chr4_group1_intronEst.txt.gz 2016-06-05 10:02 36K chr4_group1_intronEst.sql 2016-06-05 10:02 2.1K chr4_group1_gap.txt.gz 2005-06-24 12:19 2.4K chr4_group1_gap.sql 2013-10-01 12:48 714 chr4_group1_est.txt.gz 2016-06-05 10:02 59K chr4_group1_est.sql 2016-06-05 10:02 2.1K chr4_group1_chainDm3Link.txt.gz 2007-07-14 10:30 1.4M chr4_group1_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group1_chainDm3.txt.gz 2007-07-14 10:30 119K chr4_group1_chainDm3.sql 2007-07-14 10:30 1.7K chr3_rmsk.txt.gz 2005-06-24 12:19 258K chr3_rmsk.sql 2013-10-01 12:48 1.0K chr3_mrna.txt.gz 2017-10-22 06:27 816 chr3_mrna.sql 2017-10-22 06:27 2.1K chr3_intronEst.txt.gz 2016-06-05 10:02 245K chr3_intronEst.sql 2016-06-05 10:02 2.1K chr3_gap.txt.gz 2005-06-24 12:19 6.9K chr3_gap.sql 2013-10-01 12:48 700 chr3_est.txt.gz 2016-06-05 10:02 383K chr3_est.sql 2016-06-05 10:02 2.1K chr3_chainDm3Link.txt.gz 2007-07-14 10:30 6.6M chr3_chainDm3Link.sql 2007-07-14 10:30 1.4K chr3_chainDm3.txt.gz 2007-07-14 10:30 606K chr3_chainDm3.sql 2007-07-14 10:30 1.6K chr2_rmsk.txt.gz 2005-06-24 12:19 472K chr2_rmsk.sql 2013-10-01 12:48 1.0K chr2_mrna.txt.gz 2016-09-18 07:51 1.4K chr2_mrna.sql 2016-09-18 07:51 2.1K chr2_intronEst.txt.gz 2016-06-05 10:02 370K chr2_intronEst.sql 2016-06-05 10:02 2.1K chr2_gap.txt.gz 2005-06-24 12:19 11K chr2_gap.sql 2013-10-01 12:48 700 chr2_est.txt.gz 2016-06-05 10:02 566K chr2_est.sql 2016-06-05 10:02 2.1K chr2_chainDm3Link.txt.gz 2007-07-14 10:30 10M chr2_chainDm3Link.sql 2007-07-14 10:29 1.4K chr2_chainDm3.txt.gz 2007-07-14 10:29 853K chr2_chainDm3.sql 2007-07-14 10:29 1.6K blastDm2FB.txt.gz 2005-07-28 05:23 1.4M blastDm2FB.sql 2013-10-01 12:48 1.3K bigFiles.txt.gz 2024-04-14 03:30 33 bigFiles.sql 2024-04-14 03:30 1.4K augustusGene.txt.gz 2015-07-26 12:19 770K augustusGene.sql 2015-07-26 12:19 1.9K all_mrna.txt.gz 2017-10-22 06:27 8.1K all_mrna.sql 2017-10-22 06:27 2.1K all_est.txt.gz 2016-06-05 10:02 2.1M all_est.sql 2016-06-05 10:02 2.1K