Assembly information used in the 124-way multiple alignment =============================================================================== D. melanogaster - Drosophila melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) (reference) =============================================================================== A. albimanus - Anopheles albimanus (mosquitos) Broad Institute Aug. 2017 - GCA_000349125.2 - Anop_albi_ALBI9_A_V2 (net) A. aquasalis - Anopheles aquasalis (mosquitos) Universidade Federal de Minas Gerais Dec. 2017 - GCA_002846955.1 - A_aquasalis_v1.0 (net) A. arabiensis - Anopheles arabiensis (mosquitos) Broad Institute Apr. 2013 - GCA_000349185.1 - Anop_arab_DONG5_A_V1 (net) A. atroparvus - Anopheles atroparvus (mosquitos) Broad Institute Sep. 2013 - GCA_000473505.1 - Anop_atro_EBRO_V1 (net) A. christyi - Anopheles christyi (mosquitos) Broad Institute Apr. 2013 - GCA_000349165.1 - Anop_chri_ACHKN1017_V1 (net) A. coluzzii - Anopheles coluzzii (mosquitos) Washington University Genome Sequencing Center Apr. 2008 - GCA_000150765.1 - m5 (net) A. cracens - Anopheles cracens (mosquitos) University of Malaya Apr. 2017 - GCA_002091845.1 - ASM209184v1 (net) A. culicifacies - Anopheles culicifacies (mosquitos) Broad Institute Sep. 2013 - GCA_000473375.1 - Anop_culi_species_A-37_1_V1 (net) A. darlingi - Anopheles darlingi (American malaria mosquito) LNCC Dec. 2013 - GCA_000211455.3 - A_darlingi_v1 (net) A. dirus - Anopheles dirus (mosquitos) Broad Institute Mar. 2013 - GCA_000349145.1 - Anop_diru_WRAIR2_V1 (net) A. epiroticus - Anopheles epiroticus (mosquitos) Broad Institute Mar. 2013 - GCA_000349105.1 - Anop_epir_epiroticus2_V1 (net) A. farauti - Anopheles farauti (mosquitos) Broad Institute Jan. 2014 - GCA_000473445.2 - Anop_fara_FAR1_V2 (net) A. farauti_No4 - Anopheles farauti No. 4 (mosquitos) Cleveland Clinic Foundation Mar. 2015 - GCA_000956215.1 - ASM95621v1 (net) A. funestus - Anopheles funestus (African malaria mosquito) Broad Institute Mar. 2013 - GCA_000349085.1 - Anop_fune_FUMOZ_V1 (net) A. gambiae - Anopheles gambiae Oct. 2006 (AgamP3/anoGam3) (net) A. gambiae_1 - Anopheles gambiae str. PEST (African malaria mosquito) The International Consortium for the Sequencing of Anopheles Genome Oct. 2006 - GCF_000005575.2 - AgamP3 (net) A. koliensis - Anopheles koliensis (mosquitos) Cleveland Clinic Foundation Mar. 2015 - GCA_000956275.1 - ASM95627v1 (net) A. maculatus - Anopheles maculatus (mosquitos) University of Malaya Apr. 2017 - GCA_002091835.1 - ASM209183v1 (net) A. melas - Anopheles melas (mosquitos) Broad Institute Jan. 2014 - GCA_000473525.2 - Anop_mela_CM1001059_A_V2 (net) A. mellifera - Apis mellifera 04 Nov 2010 (Amel_4.5/apiMel4) (net) A. merus - Anopheles merus (mosquitos) Broad Institute Jan. 2014 - GCA_000473845.2 - Anop_meru_MAF_V1 (net) A. minimus - Anopheles minimus (mosquitos) Broad Institute Mar. 2013 - GCA_000349025.1 - Anop_mini_MINIMUS1_V1 (net) A. nili - Anopheles nili (mosquitos) Virginia Tech Jul. 2013 - GCA_000439205.1 - Anili1 (net) A. punctulatus - Anopheles punctulatus (mosquitos) Cleveland Clinic Foundation Mar. 2015 - GCA_000956255.1 - ASM95625v1 (net) A. quadriannulatus - Anopheles quadriannulatus (mosquitos) Broad Institute Mar. 2013 - GCA_000349065.1 - Anop_quad_QUAD4_A_V1 (net) A. sinensis - Anopheles sinensis (mosquitos) Nanjing Medical University Jul. 2014 - GCA_000441895.2 - AS2 (net) A. stephensi - Anopheles stephensi (Asian malaria mosquito) Institute of Bioinformatics and Applied Biotechnology Sep. 2018 - GCA_003448975.1 - ASM344897v1 (net) Aedes_aegypti - Aedes aegypti (yellow fever mosquito) Aedes aegypti Genome Working Group (AGWG) Jun. 2017 - GCF_002204515.2 - AaegL5.0 (net) Aedes_albopictus - Aedes albopictus (Asian tiger mosquito) J. Craig Venter Institute Jan. 2017 - GCF_001876365.2 - canu_80X_arrow2.2 (net) Bactrocera_dorsalis - Bactrocera dorsalis (oriental fruit fly) USDA-ARS Dec. 2014 - GCF_000789215.1 - ASM78921v2 (net) Bactrocera_latifrons - Bactrocera latifrons (flies) USDA-ARS Oct. 2016 - GCF_001853355.1 - ASM185335v1 (net) Bactrocera_oleae - Bactrocera oleae (olive fruit fly) McGill University Jul. 2015 - GCF_001188975.1 - gapfilled_joined_lt9474.gt500.covgt10 (net) Bactrocera_tryoni - Bactrocera tryoni (Queensland fruit fly) Queensland Fruit Fly Consortium May 2014 - GCA_000695345.1 - Assembly_2.2_of_Bactrocera_tryoni_genome (net) Belgica_antarctica - Belgica antarctica (flies) Stanford University Sep. 2014 - GCA_000775305.1 - ASM77530v1 (net) Calliphora_vicina - Calliphora vicina (urban bluebottle blowfly) UC Berkeley Jun. 2015 - GCA_001017275.1 - ASM101727v1 (net) Ceratitis_capitata - Ceratitis capitata (Mediterranean fruit fly) The i5k Initiative Nov. 2017 - GCF_000347755.3 - Ccap_2.1 (net) Chaoborus_trivitattus - Chaoborus trivitattus (flies) UC Berkeley May 2015 - GCA_001014815.1 - ASM101481v1 (net) Chironomus_riparius - Chironomus riparius (flies) UC Berkeley May 2015 - GCA_001014505.1 - ASM101450v1 (net) Chironomus_tentans - Chironomus tentans (flies) SciLifeLab Nov. 2014 - GCA_000786525.1 - CT01 (net) Cirrula_hians - Cirrula hians (flies) UC Berkeley May 2015 - GCA_001015075.1 - ASM101507v1 (net) Clogmia_albipunctata - Clogmia albipunctata (mothmidge) UC Berkeley May 2015 - GCA_001014945.1 - ASM101494v1 (net) Clunio_marinus - Clunio marinus (flies) MAX F. PERUTZ LABORATORIES Nov. 2016 - GCA_900005825.1 - CLUMA_1.0 (net) Coboldia_fuscipes - Coboldia fuscipes (flies) UC Berkeley May 2015 - GCA_001014335.1 - ASM101433v1 (net) Condylostylus_patibulatus - Condylostylus patibulatus (flies) UC Berkeley May 2015 - GCA_001014875.1 - ASM101487v1 (net) Culex_quinquefasciatus - Culex quinquefasciatus (southern house mosquito) Broad Institute Apr. 2007 - GCF_000209185.1 - CulPip1.0 (net) Culicoides_sonorensis - Culicoides sonorensis (flies) European Bioinformatics Institute (EMBL-EBI) Feb. 2018 - GCA_900258525.2 - Cson_Genome_version_2.0 (net) D. albomicans - Drosophila albomicans 21 May 2012 (DroAlb_1.0/droAlb1) (net) D. americana - Drosophila americana (flies) IBMC Oct. 2015 - GCA_001245395.1 - D._americana_H5_strain_genome_assembly (net) D. ananassae - Drosophila ananassae Feb. 2006 (Agencourt CAF1/droAna3) (syntenic) D. arizonae - Drosophila arizonae (flies) Biotechnology Institute of UNAM May 2016 - GCF_001654025.1 - ASM165402v1 (syntenic) D. athabasca - Drosophila athabasca (flies) UC Berkeley Jun. 2018 - GCA_003185025.1 - ASM318502v1 (syntenic) D. biarmipes - Drosophila biarmipes 04 Mar 2013 (Dbia_2.0/droBia2) (syntenic) D. bipectinata - Drosophila bipectinata 04 Mar 2013 (Dbip_2.0/droBip2) (net) D. busckii - Drosophila busckii (flies) University of California, Berkeley Sep. 2015 - GCF_001277935.1 - ASM127793v1 (syntenic) D. elegans - Drosophila elegans 04 Mar 2013 (Dele_2.0/droEle2) (net) D. erecta - Drosophila erecta Feb. 2006 (Agencourt CAF1/droEre2) (syntenic) D. eugracilis - Drosophila eugracilis 04 Mar 2013 (Deug_2.0/droEug2) (net) D. ficusphila - Drosophila ficusphila 04 Mar 2013 (Dfic_2.0/droFic2) (net) D. grimshawi - Drosophila grimshawi Feb. 2006 (Agencourt CAF1/droGri2) (syntenic) D. hydei - Drosophila hydei (flies) University of California Davis Nov. 2017 - GCF_002780465.1 - ASM278046v1 (net) D. kikkawai - Drosophila kikkawai 04 Mar 2013 (Dkik_2.0/droKik2) (net) D. melanogaster - Drosophila melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) (notFound) D. miranda - Drosophila miranda 19 Apr 2013 (DroMir_2.2/droMir2) (syntenic) D. mojavensis - Drosophila mojavensis Feb. 2006 (Agencourt CAF1/droMoj3) (syntenic) D. montana - Drosophila montana (flies) University of St. Andrews May 2018 - GCA_003086615.1 - ASM308661v1 (net) D. nasuta - Drosophila nasuta (flies) Jaypee Institute of Information Technology Jul. 2017 - GCA_002222885.1 - ASM222288v1 (net) D. navojoa - Drosophila navojoa (flies) Biotechnology Institute of UNAM May 2016 - GCF_001654015.1 - ASM165401v1 (syntenic) D. novamexicana - Drosophila novamexicana (flies) the University of Chicago Jul. 2018 - GCA_003285875.1 - DnovRS1 (syntenic) D. obscura - Drosophila obscura (flies) Laboratory for DNA Data Anaysis, Center for Information Biology, National Institute of Genetics Jul. 2017 - GCF_002217835.1 - Dobs_1.0 (net) D. persimilis - Drosophila persimilis Oct. 2005 (Broad/droPer1) (net) D. pseudoobscura - Drosophila pseudoobscura pseudoobscura 11 Apr 2013 (Dpse_3.0/droPse3) (syntenic) D. pseudoobscura_1 - Drosophila pseudoobscura pseudoobscura (flies) Baylor College of Medicine Apr. 2013 - GCF_000001765.3 - Dpse_3.0 (net) D. rhopaloa - Drosophila rhopaloa 22 Feb 2013 (Drho_2.0/droRho2) (net) D. sechellia - Drosophila sechellia Oct. 2005 (Broad/droSec1) (syntenic) D. serrata - Drosophila serrata (flies) The University of Queensland Apr. 2017 - GCF_002093755.1 - Dser1.0 (net) D. simulans - Drosophila simulans Sep. 2014 (ASM75419v2/droSim2) (syntenic) D. subobscura - Drosophila subobscura (flies) Faculdade de Ciencias, Universidade de Lisboa Nov. 2017 - GCA_002749795.1 - Dsub_1.0 (net) D. suzukii - Drosophila suzukii 30 Sep 2013 (Dsuzukii.v01/droSuz1) (net) D. takahashii - Drosophila takahashii 04 Mar 2013 (Dtak_2.0/droTak2) (net) D. virilis - Drosophila virilis Feb. 2006 (Agencourt CAF1/droVir3) (syntenic) D. willistoni - Drosophila willistoni 03 Aug 2006 (dwil_caf1/droWil2) (syntenic) D. yakuba - Drosophila yakuba 27 Jun 2006 (dyak_caf1/droYak3) (syntenic) Ephydra_gracilis - Ephydra gracilis (flies) UC Berkeley May 2015 - GCA_001014675.1 - ASM101467v1 (net) Eristalis_dimidiata - Eristalis dimidiata (flies) UC Berkeley May 2015 - GCA_001015145.1 - ASM101514v1 (net) Eutreta_diana - Eutreta diana (flies) UC Berkeley May 2015 - GCA_001015115.1 - ASM101511v1 (net) Glossina_austeni - Glossina austeni (tsetse fly) Glossina Genomes Consortium May 2014 - GCA_000688735.1 - Glossina_austeni-1.0.3 (net) Glossina_brevipalpis - Glossina brevipalpis (tsetse fly) Glossina Genomes Consortium May 2014 - GCA_000671755.1 - Glossina_brevipalpis_1.0.3 (net) Glossina_fuscipes - Glossina fuscipes fuscipes (tsetse fly) Glossina Genomes Consortium May 2014 - GCA_000671735.1 - Glossina_fuscipes-3.0.2 (net) Glossina_morsitans_1 - Glossina morsitans (tsetse fly) UC Berkeley May 2015 - GCA_001014515.1 - ASM101451v1 (net) Glossina_morsitans_2 - Glossina morsitans morsitans (tsetse fly) Wellcome Trust Sanger Institute Mar. 2014 - GCA_001077435.1 - ASM107743v1 (net) Glossina_pallidipes - Glossina pallidipes (tsetse fly) Glossina Genomes Consortium May 2014 - GCA_000688715.1 - Glossina_pallidipes-1.0.3 (net) Glossina_palpalis_gambiensis - Glossina palpalis gambiensis (tsetse fly) Glossina Genomes Consortium Jan. 2015 - GCA_000818775.1 - Glossina_palpalis_gambiensis-2.0.1 (net) Haematobia_irritans - Haematobia irritans (horn fly) USDA - Agricultural Research Service, USA May 2018 - GCA_003123925.1 - Hi_v1.0 (net) Hermetia_illucens - Hermetia illucens (flies) UC Berkeley May 2015 - GCA_001014895.1 - ASM101489v1 (net) Holcocephala_fusca - Holcocephala fusca (flies) UC Berkeley May 2015 - GCA_001015215.1 - ASM101521v1 (net) Liriomyza_trifolii - Liriomyza trifolii (celery leafminer) UC Berkeley May 2015 - GCA_001014935.1 - ASM101493v1 (net) Lucilia_cuprina - Lucilia cuprina (Australian sheep blowfly) The i5k Initiative Dec. 2017 - GCF_000699065.1 - Lcup_2.0 (net) Lucilia_sericata - Lucilia sericata (common green bottle fly) UC Berkeley May 2015 - GCA_001014835.1 - ASM101483v1 (net) Lutzomyia_longipalpis - Lutzomyia longipalpis (flies) Baylor College of Medicine Jun. 2012 - GCA_000265325.1 - Llon_1.0 (net) M. domestica - Musca domestica 22 Apr 2013 (Musca_domestica-2.0.2/musDom2) (net) Mayetiola_destructor - Mayetiola destructor (Hessian fly) Baylor College of Medicine Oct. 2010 - GCA_000149185.1 - Mdes_1.0 (net) Megaselia_abdita - Megaselia abdita (flies) UC Berkeley May 2015 - GCA_001015175.1 - ASM101517v1 (net) Megaselia_scalaris - Megaselia scalaris (flies) EBI Mar. 2013 - GCA_000341915.2 - ASM34191v2 (net) Mochlonyx_cinctipes - Mochlonyx cinctipes (flies) UC Berkeley May 2015 - GCA_001014845.1 - ASM101484v1 (net) Neobellieria_bullata - Neobellieria bullata (grey fleshfly) UC Berkeley Jun. 2015 - GCA_001017455.1 - ASM101745v1 (net) Paykullia_maculata - Paykullia maculata (flies) VU University Amsterdam Apr. 2018 - GCA_003055125.1 - ASM305512v1 (net) Phlebotomus_papatasi - Phlebotomus papatasi (flies) Washington University Genome Sequencing Center May 2012 - GCA_000262795.1 - Ppap_1.0 (net) Phormia_regina - Phormia regina (black blowfly) Indiana University-Purdue University Indianapolis (IUPUI) Sep. 2016 - GCA_001735545.1 - ASM173554v1 (net) Phortica_variegata - Phortica variegata (flies) UC Berkeley May 2015 - GCA_001014415.1 - ASM101441v1 (net) Proctacanthus_coquilletti - Proctacanthus coquilletti (flies) Smithsonian Institution, National Museum of Natural History Jan. 2017 - GCA_001932985.1 - 200kmer_750.trimmed (net) Rhagoletis_zephyria - Rhagoletis zephyria (snowberry fruit fly) University of Illinois at Urbana-Champaign Jul. 2016 - GCF_001687245.1 - Rhagoletis_zephyria_1.0 (net) Sarcophagidae_BV_2014 - Sarcophagidae sp. BV-2014 (flies) UC Berkeley Jul. 2015 - GCA_001047195.1 - ASM104719v1 (net) Scaptodrosophila_lebanonensis - Scaptodrosophila lebanonensis (flies) the University of Chicago Jul. 2018 - GCA_003285725.1 - SlebRS1 (net) Sphyracephala_brevicornis - Sphyracephala brevicornis (flies) UC Berkeley May 2015 - GCA_001015235.1 - ASM101523v1 (net) Stomoxys_calcitrans - Stomoxys calcitrans (stable fly) Glossina Genomes Consortium May 2015 - GCF_001015335.1 - Stomoxys_calcitrans-1.0.1 (net) T. castaneum - Tribolium castaneum Sep. 2005 (Baylor 2.0/triCas2) (net) Teleopsis_dalmanni - Teleopsis dalmanni (flies) University of Maryland Jul. 2017 - GCA_002237135.1 - Tel_dalmanni_2A_v1.0 (net) Tephritis_californica - Tephritis californica (flies) UC Berkeley Jun. 2015 - GCA_001017515.1 - ASM101751v1 (net) Themira_minor - Themira minor (flies) UC Berkeley May 2015 - GCA_001014575.1 - ASM101457v1 (net) Tipula_oleracea - Tipula oleracea (flies) UC Berkeley Jun. 2015 - GCA_001017535.1 - ASM101753v1 (net) Trichoceridae_BV_2014 - Trichoceridae sp. BV-2014 (flies) UC Berkeley May 2015 - GCA_001014425.1 - ASM101442v1 (net) Trupanea_jonesi - Trupanea jonesi (flies) UC Berkeley May 2015 - GCA_001014665.1 - ASM101466v1 (net) Zaprionus_indianus - Zaprionus indianus (flies) not applicable Oct. 2016 - GCA_001752445.1 - ZP_IN_1.0 (net) Zeugodacus_cucurbitae - Zeugodacus cucurbitae (melon fly) USDA ARS Dec. 2014 - GCF_000806345.1 - ASM80634v1 (net)