This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) assembly of the D. melanogaster genome
    (dm6, The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    http://www.ncbi.nlm.nih.gov/genome/47
    http://www.ncbi.nlm.nih.gov/assembly/202931
    http://www.ncbi.nlm.nih.gov/bioproject/164

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=dm6
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/dm6/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/dm6/database/ .
For a single file, e.g. gc5BaseBw.txt.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/dm6/database/gc5BaseBw.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/dm6/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/dm6/database/gc5BaseBw.txt.gz' 
        -O gc5BaseBw.txt.gz

Please note that some files contents, such as this example gc5BaseBw.txt.gz,
will point to the data being hosted in another /gbdb/ location, which
refers to ftp://hgdownload.cse.ucsc.edu/gbdb/

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql dm6 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql dm6 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                                          Last modified      Size  Description
Parent Directory - all_est.sql 2014-12-11 14:46 2.1K all_est.txt.gz 2014-12-11 14:46 26M genscanSubopt.sql 2014-12-11 14:47 1.6K genscanSubopt.txt.gz 2014-12-11 14:47 46K gold.sql 2014-12-11 14:47 1.7K gold.txt.gz 2014-12-11 14:47 19K grp.sql 2014-12-11 14:47 1.3K grp.txt.gz 2014-12-11 14:47 200 chainAnoGam1.sql 2014-12-11 14:47 1.7K chainAnoGam1.txt.gz 2014-12-11 14:47 2.2M history.sql 2014-12-11 14:47 1.6K history.txt.gz 2014-12-11 14:47 1.6K chainAnoGam1Link.sql 2014-12-11 14:47 1.5K gap.sql 2014-12-11 14:47 1.6K gap.txt.gz 2014-12-11 14:47 7.1K chainAnoGam1Link.txt.gz 2014-12-11 14:47 16M chainDroPer1.sql 2014-12-11 14:48 1.7K chainDroPer1.txt.gz 2014-12-11 14:48 6.6M chainDroPer1Link.sql 2014-12-11 14:48 1.5K chainDroPer1Link.txt.gz 2014-12-11 14:48 58M chainDroSec1.sql 2014-12-11 14:48 1.7K chainDroSec1.txt.gz 2014-12-11 14:48 23M chainDroSec1Link.sql 2014-12-11 14:48 1.5K chainDroSec1Link.txt.gz 2014-12-11 14:49 93M chainDroSim1.sql 2014-12-11 14:50 1.7K chainDroSim1.txt.gz 2014-12-11 14:50 11M chainDroSim1Link.sql 2014-12-11 14:51 1.5K chainDroSim1Link.txt.gz 2014-12-11 14:51 57M chromInfo.sql 2014-12-11 14:51 1.4K chromInfo.txt.gz 2014-12-11 14:51 10K cpgIslandExt.sql 2014-12-11 14:51 1.7K cpgIslandExt.txt.gz 2014-12-11 14:51 437K cpgIslandExtUnmasked.sql 2014-12-11 14:51 1.7K cpgIslandExtUnmasked.txt.gz 2014-12-11 14:51 541K cytoBand.sql 2014-12-11 14:51 1.5K cytoBand.txt.gz 2014-12-11 14:51 55K intronEst.sql 2014-12-11 14:51 2.1K intronEst.txt.gz 2014-12-11 14:51 11M cytoBandIdeo.sql 2014-12-11 14:51 1.5K cytoBandIdeo.txt.gz 2014-12-11 14:51 55K gc5BaseBw.sql 2014-12-11 14:51 1.3K gc5BaseBw.txt.gz 2014-12-11 14:51 62 estOrientInfo.sql 2014-12-11 14:51 1.8K estOrientInfo.txt.gz 2014-12-11 14:52 8.8M genscan.sql 2014-12-11 14:52 1.7K genscan.txt.gz 2014-12-11 14:52 708K multiz27way.sql 2014-12-11 14:52 1.5K multiz27way.txt.gz 2014-12-11 14:52 29M multiz27wayFrames.sql 2014-12-11 14:52 1.7K multiz27wayFrames.txt.gz 2014-12-11 14:52 4.3M multiz27waySummary.sql 2014-12-11 14:52 1.6K multiz27waySummary.txt.gz 2014-12-11 14:52 1.9M nestedRepeats.sql 2014-12-11 14:52 1.9K nestedRepeats.txt.gz 2014-12-11 14:52 260K netAnoGam1.sql 2014-12-11 14:52 2.1K netAnoGam1.txt.gz 2014-12-11 14:52 1.5M netDroPer1.sql 2014-12-11 14:52 2.1K netDroPer1.txt.gz 2014-12-11 14:52 4.9M netDroSec1.sql 2014-12-11 14:52 2.1K netDroSec1.txt.gz 2014-12-11 14:52 2.8M netDroSim1.sql 2014-12-11 14:52 2.1K netDroSim1.txt.gz 2014-12-11 14:52 2.9M phastCons27way.sql 2014-12-11 14:52 1.8K phastCons27way.txt.gz 2014-12-11 14:52 2.8M phastConsElements27way.sql 2014-12-11 14:52 1.6K phastConsElements27way.txt.gz 2014-12-11 14:52 13M phyloP27way.sql 2014-12-11 14:52 1.8K phyloP27way.txt.gz 2014-12-11 14:52 3.5M rmsk.sql 2014-12-11 14:52 1.9K rmsk.txt.gz 2014-12-11 14:52 3.1M simpleRepeat.sql 2014-12-11 14:52 1.9K simpleRepeat.txt.gz 2014-12-11 14:52 964K ucscToINSDC.sql 2014-12-11 14:52 1.4K ucscToINSDC.txt.gz 2014-12-11 14:52 14K windowmaskerSdust.sql 2014-12-11 14:52 1.5K windowmaskerSdust.txt.gz 2014-12-11 14:52 6.9M augustusGene.sql 2015-07-26 12:13 1.9K augustusGene.txt.gz 2015-07-26 12:13 741K microsat.sql 2015-08-23 14:10 1.5K microsat.txt.gz 2015-08-23 14:10 3.5K oreganno.sql 2016-05-15 08:25 1.5K oreganno.txt.gz 2016-05-15 08:25 46K oregannoAttr.sql 2016-05-15 08:25 1.4K oregannoAttr.txt.gz 2016-05-15 08:25 52K oregannoLink.sql 2016-05-15 08:25 1.4K oregannoLink.txt.gz 2016-05-15 08:25 51K refGenePfam.sql 2016-10-30 06:46 1.8K refGenePfam.txt.gz 2016-10-30 06:46 485K crisprRanges.sql 2016-11-13 06:33 1.4K crisprRanges.txt.gz 2016-11-13 06:33 158K crisprTargets.sql 2016-11-13 06:33 1.3K crisprTargets.txt.gz 2016-11-13 06:33 59 locusName.sql 2016-11-13 06:33 1.5K locusName.txt.gz 2016-11-13 06:33 1.1M chromAlias.sql 2018-02-18 06:17 1.4K chromAlias.txt.gz 2018-02-18 06:17 30K ucscToRefSeq.sql 2018-02-18 06:17 1.4K ucscToRefSeq.txt.gz 2018-02-18 06:17 14K chainAnoGam3.sql 2018-10-07 03:24 1.7K chainAnoGam3.txt.gz 2018-10-07 03:24 2.1M chainAnoGam3Link.sql 2018-10-07 03:24 1.5K chainAnoGam3Link.txt.gz 2018-10-07 03:24 14M netAnoGam3.sql 2018-10-07 03:24 2.1K netAnoGam3.txt.gz 2018-10-07 03:24 1.4M chainA_albimanus.sql 2019-01-20 08:07 1.7K chainA_albimanus.txt.gz 2019-01-20 08:07 1.5M extFile.sql 2019-01-20 08:07 1.4K extFile.txt.gz 2019-01-20 08:07 7.4K chainA_albimanusLink.sql 2019-01-20 08:07 1.6K chainA_albimanusLink.txt.gz 2019-01-20 08:07 9.4M chainA_arabiensisLink.sql 2019-01-20 08:07 1.6K chainA_arabiensisLink.txt.gz 2019-01-20 08:07 12M chainA_aquasalis.sql 2019-01-20 08:07 1.7K chainA_aquasalis.txt.gz 2019-01-20 08:07 1.5M chainA_atroparvusLink.sql 2019-01-20 08:07 1.6K chainA_atroparvusLink.txt.gz 2019-01-20 08:07 12M chainA_aquasalisLink.sql 2019-01-20 08:07 1.6K chainA_aquasalisLink.txt.gz 2019-01-20 08:07 8.4M chainA_atroparvus.sql 2019-01-20 08:07 1.7K chainA_atroparvus.txt.gz 2019-01-20 08:07 1.8M chainA_arabiensis.sql 2019-01-20 08:07 1.7K chainA_arabiensis.txt.gz 2019-01-20 08:07 1.9M chainA_christyi.sql 2019-01-20 08:07 1.7K chainA_christyi.txt.gz 2019-01-20 08:07 1.5M chainA_christyiLink.sql 2019-01-20 08:07 1.6K chainA_christyiLink.txt.gz 2019-01-20 08:07 8.4M chainA_coluzzii.sql 2019-01-20 08:07 1.7K chainA_coluzzii.txt.gz 2019-01-20 08:07 1.8M chainA_coluzziiLink.sql 2019-01-20 08:07 1.6K chainA_coluzziiLink.txt.gz 2019-01-20 08:07 11M chainA_cracens.sql 2019-01-20 08:07 1.7K chainA_cracens.txt.gz 2019-01-20 08:07 2.4M chainA_cracensLink.sql 2019-01-20 08:07 1.6K chainA_cracensLink.txt.gz 2019-01-20 08:07 13M chainA_culicifacies.sql 2019-01-20 08:07 1.7K chainA_culicifacies.txt.gz 2019-01-20 08:07 1.5M chainA_culicifaciesLink.sql 2019-01-20 08:07 1.6K chainA_culicifaciesLink.txt.gz 2019-01-20 08:07 8.6M chainA_darlingi.sql 2019-01-20 08:07 1.7K chainA_darlingi.txt.gz 2019-01-20 08:07 1.5M chainA_darlingiLink.sql 2019-01-20 08:07 1.6K chainA_darlingiLink.txt.gz 2019-01-20 08:07 8.6M chainA_dirus.sql 2019-01-20 08:07 1.7K chainA_dirus.txt.gz 2019-01-20 08:07 1.8M chainA_dirusLink.sql 2019-01-20 08:07 1.5K chainA_dirusLink.txt.gz 2019-01-20 08:07 12M chainA_epiroticus.sql 2019-01-20 08:07 1.7K chainA_epiroticus.txt.gz 2019-01-20 08:07 1.8M chainA_epiroticusLink.sql 2019-01-20 08:07 1.6K chainA_epiroticusLink.txt.gz 2019-01-20 08:07 11M chainA_farauti.sql 2019-01-20 08:07 1.7K chainA_farauti.txt.gz 2019-01-20 08:07 1.7M chainA_farautiLink.sql 2019-01-20 08:07 1.6K chainA_farautiLink.txt.gz 2019-01-20 08:07 11M chainA_farauti_No4.sql 2019-01-20 08:07 1.7K chainA_farauti_No4.txt.gz 2019-01-20 08:07 1.5M chainA_farauti_No4Link.sql 2019-01-20 08:07 1.6K chainA_farauti_No4Link.txt.gz 2019-01-20 08:07 8.3M chainA_funestus.sql 2019-01-20 08:07 1.7K chainA_funestus.txt.gz 2019-01-20 08:07 1.5M chainA_funestusLink.sql 2019-01-20 08:07 1.6K chainA_funestusLink.txt.gz 2019-01-20 08:07 9.2M chainA_gambiae_1.sql 2019-01-20 08:07 1.7K chainA_gambiae_1.txt.gz 2019-01-20 08:07 1.6M chainA_gambiae_1Link.sql 2019-01-20 08:07 1.6K chainA_gambiae_1Link.txt.gz 2019-01-20 08:07 6.9M chainA_koliensis.sql 2019-01-20 08:08 1.7K chainA_koliensis.txt.gz 2019-01-20 08:08 1.5M chainA_koliensisLink.sql 2019-01-20 08:08 1.6K chainA_koliensisLink.txt.gz 2019-01-20 08:08 7.7M chainA_maculatus.sql 2019-01-20 08:08 1.7K chainA_maculatus.txt.gz 2019-01-20 08:08 3.4M chainA_maculatusLink.sql 2019-01-20 08:08 1.6K chainA_maculatusLink.txt.gz 2019-01-20 08:08 19M chainA_melas.sql 2019-01-20 08:08 1.7K chainA_melas.txt.gz 2019-01-20 08:08 1.9M chainA_melasLink.sql 2019-01-20 08:08 1.5K chainA_melasLink.txt.gz 2019-01-20 08:08 11M chainA_merus.sql 2019-01-20 08:08 1.7K chainA_merus.txt.gz 2019-01-20 08:08 2.0M chainA_merusLink.sql 2019-01-20 08:08 1.5K chainA_merusLink.txt.gz 2019-01-20 08:08 13M chainA_minimus.sql 2019-01-20 08:08 1.7K chainA_minimus.txt.gz 2019-01-20 08:08 1.5M chainA_minimusLink.sql 2019-01-20 08:08 1.6K chainA_minimusLink.txt.gz 2019-01-20 08:08 9.6M chainA_nili.sql 2019-01-20 08:08 1.7K chainA_nili.txt.gz 2019-01-20 08:08 1.2M chainA_niliLink.sql 2019-01-20 08:08 1.5K chainA_niliLink.txt.gz 2019-01-20 08:08 5.2M chainA_punctulatus.sql 2019-01-20 08:08 1.7K chainA_punctulatus.txt.gz 2019-01-20 08:08 1.5M chainA_punctulatusLink.sql 2019-01-20 08:08 1.6K chainA_punctulatusLink.txt.gz 2019-01-20 08:08 8.1M chainA_quadriannulatus.sql 2019-01-20 08:08 1.7K chainA_quadriannulatus.txt.gz 2019-01-20 08:08 1.9M chainA_quadriannulatusLink.sql 2019-01-20 08:08 1.6K chainA_quadriannulatusLink.txt.gz 2019-01-20 08:08 12M chainA_sinensis.sql 2019-01-20 08:08 1.7K chainA_sinensis.txt.gz 2019-01-20 08:08 2.0M chainA_sinensisLink.sql 2019-01-20 08:08 1.6K chainA_sinensisLink.txt.gz 2019-01-20 08:08 12M chainA_stephensi.sql 2019-01-20 08:08 1.7K chainA_stephensi.txt.gz 2019-01-20 08:08 1.5M chainA_stephensiLink.sql 2019-01-20 08:08 1.6K chainA_stephensiLink.txt.gz 2019-01-20 08:08 9.7M chainAedes_aegypti.sql 2019-01-20 08:08 1.7K chainAedes_aegypti.txt.gz 2019-01-20 08:08 4.8M chainAedes_aegyptiLink.sql 2019-01-20 08:08 1.6K chainAedes_aegyptiLink.txt.gz 2019-01-20 08:08 37M chainAedes_albopictus.sql 2019-01-20 08:08 1.7K chainAedes_albopictus.txt.gz 2019-01-20 08:08 8.1M chainAedes_albopictusLink.sql 2019-01-20 08:08 1.6K chainAedes_albopictusLink.txt.gz 2019-01-20 08:08 58M chainApiMel4.sql 2019-01-20 08:09 1.7K chainApiMel4.txt.gz 2019-01-20 08:09 951K chainApiMel4Link.sql 2019-01-20 08:09 1.5K chainApiMel4Link.txt.gz 2019-01-20 08:09 5.9M chainBactrocera_dorsalis.sql 2019-01-20 08:09 1.8K chainBactrocera_dorsalis.txt.gz 2019-01-20 08:09 2.2M chainBactrocera_dorsalisLink.sql 2019-01-20 08:09 1.6K chainBactrocera_dorsalisLink.txt.gz 2019-01-20 08:09 15M chainBactrocera_latifrons.sql 2019-01-20 08:09 1.8K chainBactrocera_latifrons.txt.gz 2019-01-20 08:09 3.8M chainBactrocera_latifronsLink.sql 2019-01-20 08:09 1.6K chainBactrocera_latifronsLink.txt.gz 2019-01-20 08:09 33M chainBactrocera_oleae.sql 2019-01-20 08:09 1.7K chainBactrocera_oleae.txt.gz 2019-01-20 08:09 2.8M chainBactrocera_oleaeLink.sql 2019-01-20 08:09 1.6K chainBactrocera_oleaeLink.txt.gz 2019-01-20 08:09 22M chainBactrocera_tryoni.sql 2019-01-20 08:09 1.7K chainBactrocera_tryoni.txt.gz 2019-01-20 08:09 3.3M chainBactrocera_tryoniLink.sql 2019-01-20 08:09 1.6K chainBactrocera_tryoniLink.txt.gz 2019-01-20 08:09 23M chainBelgica_antarctica.sql 2019-01-20 08:09 1.7K chainBelgica_antarctica.txt.gz 2019-01-20 08:09 1.0M chainBelgica_antarcticaLink.sql 2019-01-20 08:09 1.6K chainBelgica_antarcticaLink.txt.gz 2019-01-20 08:09 6.5M chainCalliphora_vicina.sql 2019-01-20 08:09 1.7K chainCalliphora_vicina.txt.gz 2019-01-20 08:09 2.3M chainCalliphora_vicinaLink.sql 2019-01-20 08:09 1.6K chainCalliphora_vicinaLink.txt.gz 2019-01-20 08:09 9.9M chainCeratitis_capitata.sql 2019-01-20 08:09 1.7K chainCeratitis_capitata.txt.gz 2019-01-20 08:09 2.7M chainCeratitis_capitataLink.sql 2019-01-20 08:09 1.6K chainCeratitis_capitataLink.txt.gz 2019-01-20 08:09 23M chainChaoborus_trivitattus.sql 2019-01-20 08:09 1.8K chainChaoborus_trivitattus.txt.gz 2019-01-20 08:09 1.2M chainChaoborus_trivitattusLink.sql 2019-01-20 08:09 1.6K chainChaoborus_trivitattusLink.txt.gz 2019-01-20 08:09 4.9M chainChironomus_riparius.sql 2019-01-20 08:09 1.8K chainChironomus_riparius.txt.gz 2019-01-20 08:09 825K chainChironomus_ripariusLink.sql 2019-01-20 08:09 1.6K chainChironomus_ripariusLink.txt.gz 2019-01-20 08:09 4.9M chainChironomus_tentans.sql 2019-01-20 08:09 1.7K chainChironomus_tentans.txt.gz 2019-01-20 08:09 900K chainChironomus_tentansLink.sql 2019-01-20 08:09 1.6K chainChironomus_tentansLink.txt.gz 2019-01-20 08:09 5.6M chainCirrula_hians.sql 2019-01-20 08:09 1.7K chainCirrula_hians.txt.gz 2019-01-20 08:09 2.0M chainCirrula_hiansLink.sql 2019-01-20 08:09 1.6K chainCirrula_hiansLink.txt.gz 2019-01-20 08:09 9.0M chainClogmia_albipunctata.sql 2019-01-20 08:10 1.8K chainClogmia_albipunctata.txt.gz 2019-01-20 08:10 1.9M chainClogmia_albipunctataLink.sql 2019-01-20 08:10 1.6K chainClogmia_albipunctataLink.txt.gz 2019-01-20 08:10 9.8M chainClunio_marinus.sql 2019-01-20 08:10 1.7K chainClunio_marinus.txt.gz 2019-01-20 08:10 913K chainClunio_marinusLink.sql 2019-01-20 08:10 1.6K chainClunio_marinusLink.txt.gz 2019-01-20 08:10 6.2M chainCoboldia_fuscipes.sql 2019-01-20 08:10 1.7K chainCoboldia_fuscipes.txt.gz 2019-01-20 08:10 846K chainCoboldia_fuscipesLink.sql 2019-01-20 08:10 1.6K chainCoboldia_fuscipesLink.txt.gz 2019-01-20 08:10 6.2M chainCondylostylus_patibulatus.sql 2019-01-20 08:10 1.8K chainCondylostylus_patibulatus.txt.gz 2019-01-20 08:10 955K chainCondylostylus_patibulatusLink.sql 2019-01-20 08:10 1.6K chainCondylostylus_patibulatusLink.txt.gz 2019-01-20 08:10 4.2M chainCulex_quinquefasciatus.sql 2019-01-20 08:10 1.8K chainCulex_quinquefasciatus.txt.gz 2019-01-20 08:10 3.0M chainCulex_quinquefasciatusLink.sql 2019-01-20 08:10 1.6K chainCulex_quinquefasciatusLink.txt.gz 2019-01-20 08:10 17M chainCulicoides_sonorensis.sql 2019-01-20 08:10 1.8K chainCulicoides_sonorensis.txt.gz 2019-01-20 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