This directory contains zipped multiple alignments of the following
assemblies to the D. melanogaster genome (dm2, Apr. 2004):
- D. simulans (droSim1, Apr. 2005)
- D. yakuba (droYak1, Apr. 2004)
- D. ananassae (droAna1, Jul. 2004)
- D. pseudoobscura (dp3, Nov. 2004)
- D. virilis (droVir1, Jul. 2004)
- D. mojavensis (droMoj1, Aug. 2004)
- A. gambiae (anoGam1, Feb. 2003)
- A. mellifera (apiMel1, Jul. 2004)
The chr*.maf.gz files each contain all the alignments to that particular
D. melanogaster chromosome.
Pairwise alignments (chain and netted blastz alignments) can be found
one directory level up in the vs*/axtNet/ directories (eg. dm2-droYak1
alignments may be found in ../vsDroYak1/axtNet/chr*.axt.)
For a description of the multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/dm2/multiz9way/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
md5sum.txt 2005-05-24 10:03 607
chrM.maf.gz 2005-05-24 10:03 48K
chr4h.maf.gz 2005-05-24 10:03 135K
chrYh.maf.gz 2005-05-24 10:03 427K
chrXh.maf.gz 2005-05-24 10:03 762K
chr2h.maf.gz 2005-05-24 10:01 2.0M
chr3h.maf.gz 2005-05-24 10:03 3.2M
chr4.maf.gz 2005-05-24 10:03 3.3M
chrU.maf.gz 2005-05-24 10:03 5.6M
chr2R.maf.gz 2005-05-24 10:01 49M
chrX.maf.gz 2005-05-24 10:03 53M
chr2L.maf.gz 2005-05-24 10:01 55M
chr3L.maf.gz 2005-05-24 10:02 58M
chr3R.maf.gz 2005-05-24 10:03 68M