This directory contains compressed phastCons scores for multiple
alignments of the following assemblies to the D. melanogaster genome
(dm1, Jan. 2003, BDGP Release 3).
- D. yakuba (droYak1, Apr. 2004)
- D. pseudoobscura (dp2, Aug. 2003)
- A. gambiae (anoGam1, Feb. 2003)
For a description of the phastCons file format, see
http://genome.ucsc.edu/goldenPath/help/phastCons.html .
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/dm1/phastConsDroYak1Dp2AnoGam1. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
For data use restrictions regarding the genome assemblies used in this
annotation, see http://genome.ucsc.edu/goldenPath/credits.html .
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References for phastCons:
Siepel, A. et al. Evolutionarily conserved elements in vertebrate, insect,
worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005).
Siepel, A. and Haussler, D. Phylogenetic hidden Markov models. In Statistical
Methods in Molecular Evolution (ed. Nielsen, R.) (Springer, 2005).
For a discussion of the methods used to calculate the phastCons scores,
see the description page for the dm1 Conservation track in the Genome
Browser.
Name Last modified Size Description
Parent Directory -
chr2L.pp.gz 2006-01-30 10:18 92M
chr2R.pp.gz 2006-01-30 10:18 83M
chr2h.pp.gz 2006-01-30 10:18 2.5M
chr3L.pp.gz 2006-01-30 10:19 97M
chr3R.pp.gz 2006-01-30 10:20 117M
chr3h.pp.gz 2006-01-30 10:20 2.6M
chr4.pp.gz 2006-01-30 10:16 3.5M
chrU.pp.gz 2006-01-30 10:16 9.2M
chrX.pp.gz 2006-01-30 10:17 89M
chrXh.pp.gz 2006-01-30 10:20 911K
chrYh.pp.gz 2006-01-30 10:20 396K
md5sum.txt 2006-01-30 10:24 503