This directory contains a dump of the UCSC genome annotation
database for the Mar. 2004 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS120/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ce2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely available for public use.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 2020-08-21 06:44 1.7M
xenoRefSeqAli.sql 2020-08-21 06:44 2.1K
xenoRefGene.txt.gz 2020-08-21 06:44 1.7M
xenoRefGene.sql 2020-08-21 06:44 1.9K
xenoRefFlat.txt.gz 2020-08-21 06:44 1.5M
xenoRefFlat.sql 2020-08-21 06:44 1.7K
wormP2P.txt.gz 2005-06-16 04:54 473K
wormP2P.sql 2013-10-01 12:48 353
wabaCbr.txt.gz 2004-05-10 10:51 130M
wabaCbr.sql 2013-10-01 12:48 832
twinscanPep.txt.gz 2004-05-10 10:48 4.3M
twinscanPep.sql 2013-10-01 12:48 337
twinscan.txt.gz 2004-05-10 10:48 1.1M
twinscan.sql 2013-10-01 12:48 1.0K
trackDb.txt.gz 2023-03-28 13:47 24K
trackDb.sql 2023-03-28 13:47 2.1K
tableList.txt.gz 2024-12-08 03:29 6.5K
tableList.sql 2024-12-08 03:29 1.6K
tableDescriptions.txt.gz 2024-12-07 02:03 6.4K
tableDescriptions.sql 2024-12-07 02:03 1.5K
simpleRepeat.txt.gz 2004-05-10 10:48 822K
simpleRepeat.sql 2013-10-01 12:48 1.1K
seq.txt.gz 2004-05-10 10:48 232K
seq.sql 2013-10-01 12:48 596
sangerToRefSeq.txt.gz 2004-06-07 07:35 110K
sangerToRefSeq.sql 2013-10-01 12:48 379
sangerToPfam.txt.gz 2004-06-07 07:35 69K
sangerToPfam.sql 2013-10-01 12:48 368
sangerToKim.txt.gz 2004-06-07 07:35 100K
sangerToKim.sql 2013-10-01 12:48 373
sangerPep.txt.gz 2004-05-27 05:10 4.8M
sangerPep.sql 2013-10-01 12:48 333
sangerLinks.txt.gz 2004-05-27 05:10 539K
sangerLinks.sql 2013-10-01 12:48 426
sangerIsoforms.txt.gz 2004-06-07 07:35 106K
sangerIsoforms.sql 2013-10-01 12:48 403
sangerGenefinder.txt.gz 2004-05-12 05:11 1.2M
sangerGenefinder.sql 2013-10-01 12:48 1.1K
sangerGene.txt.gz 2004-05-27 05:10 1.2M
sangerGene.sql 2013-10-01 12:48 833
sangerCanonical.txt.gz 2004-06-07 07:35 341K
sangerCanonical.sql 2013-10-01 12:48 610
sangerBlastTab.txt.gz 2004-06-07 07:35 19M
sangerBlastTab.sql 2013-10-01 12:48 806
rnaCluster.txt.gz 2004-05-10 10:48 349K
rnaCluster.sql 2013-10-01 12:48 953
rnBlastTab.txt.gz 2006-07-22 11:29 236K
rnBlastTab.sql 2006-07-22 11:29 1.6K
refSeqAli.txt.gz 2020-08-21 06:44 2.7M
refSeqAli.sql 2020-08-21 06:44 2.4K
refGene.txt.gz 2020-08-21 06:36 1.9M
refGene.sql 2020-08-21 06:36 1.8K
refFlat.txt.gz 2020-08-21 06:39 2.1M
refFlat.sql 2020-08-21 06:39 1.9K
picTar.txt.gz 2006-04-28 03:42 117K
picTar.sql 2013-10-01 12:48 747
phastConsElements.txt.gz 2004-09-28 10:05 1.0M
phastConsElements.sql 2013-10-01 12:48 651
phastCons.txt.gz 2004-09-28 10:05 2.3M
phastCons.sql 2013-10-01 12:48 891
orfToGene.txt.gz 2004-05-10 10:48 103K
orfToGene.sql 2013-10-01 12:48 371
netCb1.txt.gz 2004-05-10 10:48 4.4M
netCb1.sql 2013-10-01 12:48 1.3K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 828K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
mmBlastTab.txt.gz 2006-05-26 05:31 280K
mmBlastTab.sql 2013-10-01 12:48 798
microsat.txt.gz 2015-08-23 12:09 3.0K
microsat.sql 2015-08-23 12:09 1.5K
miRNA.txt.gz 2004-05-10 10:48 2.3K
miRNA.sql 2013-10-01 12:48 776
kimExpDistance.txt.gz 2004-06-07 07:34 118M
kimExpDistance.sql 2013-10-01 12:48 390
history.txt.gz 2010-07-04 14:53 1.0K
history.sql 2010-07-04 14:53 1.5K
hgFindSpec.txt.gz 2023-03-28 13:47 1.1K
hgFindSpec.sql 2023-03-28 13:47 1.8K
hgBlastTab.txt.gz 2007-04-08 09:42 121K
hgBlastTab.sql 2007-04-08 09:42 1.6K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
geneidPep.txt.gz 2005-03-26 05:08 4.8M
geneidPep.sql 2013-10-01 12:48 324
geneid.txt.gz 2005-03-26 05:08 1.3M
geneid.sql 2013-10-01 12:48 1.0K
gc5Base.txt.gz 2004-05-10 10:48 385K
gc5Base.sql 2013-10-01 12:48 896
gbLoaded.txt.gz 2020-08-21 06:44 217K
gbLoaded.sql 2020-08-21 06:44 1.7K
extFile.txt.gz 2004-09-28 10:05 295
extFile.sql 2013-10-01 12:48 441
estOrientInfo.txt.gz 2016-06-05 09:18 4.0M
estOrientInfo.sql 2016-06-05 09:18 1.9K
drBlastTab.txt.gz 2010-04-04 10:26 291K
drBlastTab.sql 2010-04-04 10:26 1.8K
dmBlastTab.txt.gz 2007-08-30 18:04 111K
dmBlastTab.sql 2007-08-30 18:04 1.6K
chromInfo.txt.gz 2004-05-10 10:48 140
chromInfo.sql 2013-10-01 12:48 401
chrX_wabaCbr.txt.gz 2004-05-10 10:48 1.0M
chrX_wabaCbr.sql 2013-10-01 12:48 571
chrX_rmsk.txt.gz 2004-05-10 10:48 289K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_mrna.txt.gz 2020-08-21 06:07 47K
chrX_mrna.sql 2020-08-21 06:07 2.4K
chrX_intronEst.txt.gz 2016-06-05 09:18 1.4M
chrX_intronEst.sql 2016-06-05 09:18 2.4K
chrX_gold.txt.gz 2004-05-10 10:48 11K
chrX_gold.sql 2013-10-01 12:48 786
chrX_gap.txt.gz 2004-05-10 10:48 33
chrX_gap.sql 2013-10-01 12:48 709
chrX_est.txt.gz 2016-06-05 09:18 1.8M
chrX_est.sql 2016-06-05 09:18 2.4K
chrX_chainSelfLink.txt.gz 2004-05-21 05:06 3.3M
chrX_chainSelfLink.sql 2013-10-01 12:48 582
chrX_chainSelf.txt.gz 2004-05-21 05:06 874K
chrX_chainSelf.sql 2013-10-01 12:48 859
chrX_chainCb1Link.txt.gz 2004-05-10 10:48 5.3M
chrX_chainCb1Link.sql 2013-10-01 12:48 580
chrX_chainCb1.txt.gz 2004-05-10 10:48 1.7M
chrX_chainCb1.sql 2013-10-01 12:48 857
chrX_blastzCb1.txt.gz 2004-05-10 10:48 6.0M
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_wabaCbr.txt.gz 2004-05-10 10:48 1.8M
chrV_wabaCbr.sql 2013-10-01 12:48 571
chrV_rmsk.txt.gz 2004-05-10 10:48 456K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_mrna.txt.gz 2018-01-07 06:38 40K
chrV_mrna.sql 2018-01-07 06:38 2.4K
chrV_intronEst.txt.gz 2016-06-05 09:18 1.8M
chrV_intronEst.sql 2016-06-05 09:18 2.4K
chrV_gold.txt.gz 2004-05-10 10:48 12K
chrV_gold.sql 2013-10-01 12:48 786
chrV_gap.txt.gz 2004-05-10 10:48 33
chrV_gap.sql 2013-10-01 12:48 709
chrV_est.txt.gz 2016-06-05 09:18 2.2M
chrV_est.sql 2016-06-05 09:18 2.4K
chrV_chainSelfLink.txt.gz 2004-05-21 05:06 10M
chrV_chainSelfLink.sql 2013-10-01 12:48 582
chrV_chainSelf.txt.gz 2004-05-21 05:06 1.5M
chrV_chainSelf.sql 2013-10-01 12:48 859
chrV_chainCb1Link.txt.gz 2004-05-10 10:47 13M
chrV_chainCb1Link.sql 2013-10-01 12:48 580
chrV_chainCb1.txt.gz 2004-05-10 10:47 5.2M
chrV_chainCb1.sql 2013-10-01 12:48 857
chrV_blastzCb1.txt.gz 2004-05-10 10:47 15M
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_wabaCbr.txt.gz 2004-05-10 10:47 412
chrM_wabaCbr.sql 2013-10-01 12:48 571
chrM_rmsk.txt.gz 2004-05-10 10:47 662
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_mrna.txt.gz 2008-03-18 03:55 34
chrM_mrna.sql 2008-03-18 03:55 2.2K
chrM_intronEst.txt.gz 2008-03-18 03:55 39
chrM_intronEst.sql 2008-03-18 03:55 2.2K
chrM_gold.txt.gz 2004-05-10 10:47 64
chrM_gold.sql 2013-10-01 12:48 786
chrM_gap.txt.gz 2004-05-10 10:47 33
chrM_gap.sql 2013-10-01 12:48 709
chrM_est.txt.gz 2016-06-05 09:18 50K
chrM_est.sql 2016-06-05 09:18 2.4K
chrM_chainCb1Link.txt.gz 2004-05-10 10:47 2.0K
chrM_chainCb1Link.sql 2013-10-01 12:48 580
chrM_chainCb1.txt.gz 2004-05-10 10:47 393
chrM_chainCb1.sql 2013-10-01 12:48 857
chrM_blastzCb1.txt.gz 2004-05-10 10:47 2.1K
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_wabaCbr.txt.gz 2004-05-10 10:46 1.5M
chrI_wabaCbr.sql 2013-10-01 12:48 571
chrI_rmsk.txt.gz 2004-05-10 10:46 409K
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_mrna.txt.gz 2020-05-07 17:18 40K
chrI_mrna.sql 2020-05-07 17:18 2.4K
chrI_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrI_intronEst.sql 2016-06-05 09:18 2.4K
chrI_gold.txt.gz 2004-05-10 10:46 7.9K
chrI_gold.sql 2013-10-01 12:48 786
chrI_gap.txt.gz 2004-05-10 10:46 33
chrI_gap.sql 2013-10-01 12:48 709
chrI_est.txt.gz 2016-06-05 09:18 2.9M
chrI_est.sql 2016-06-05 09:18 2.4K
chrI_chainSelfLink.txt.gz 2004-05-21 05:05 7.9M
chrI_chainSelfLink.sql 2013-10-01 12:48 582
chrI_chainSelf.txt.gz 2004-05-21 05:06 1.1M
chrI_chainSelf.sql 2013-10-01 12:48 859
chrI_chainCb1Link.txt.gz 2004-06-01 07:23 8.2M
chrI_chainCb1Link.sql 2013-10-01 12:48 571
chrI_chainCb1.txt.gz 2004-05-10 10:46 3.2M
chrI_chainCb1.sql 2013-10-01 12:48 857
chrI_blastzCb1.txt.gz 2004-05-10 10:46 9.6M
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_wabaCbr.txt.gz 2004-05-10 10:46 2.5M
chrIV_wabaCbr.sql 2013-10-01 12:48 573
chrIV_rmsk.txt.gz 2004-05-10 10:46 381K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_mrna.txt.gz 2020-08-21 06:07 112K
chrIV_mrna.sql 2020-08-21 06:07 2.4K
chrIV_intronEst.txt.gz 2016-06-05 09:18 1.7M
chrIV_intronEst.sql 2016-06-05 09:18 2.4K
chrIV_gold.txt.gz 2004-05-10 10:46 8.7K
chrIV_gold.sql 2013-10-01 12:48 788
chrIV_gap.txt.gz 2004-05-10 10:46 34
chrIV_gap.sql 2013-10-01 12:48 711
chrIV_est.txt.gz 2016-06-05 09:18 2.2M
chrIV_est.sql 2016-06-05 09:18 2.4K
chrIV_chainSelfLink.txt.gz 2004-05-21 05:05 7.0M
chrIV_chainSelfLink.sql 2013-10-01 12:48 584
chrIV_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrIV_chainSelf.sql 2013-10-01 12:48 861
chrIV_chainCb1Link.txt.gz 2004-05-10 10:45 10M
chrIV_chainCb1Link.sql 2013-10-01 12:48 582
chrIV_chainCb1.txt.gz 2004-05-10 10:45 3.8M
chrIV_chainCb1.sql 2013-10-01 12:48 859
chrIV_blastzCb1.txt.gz 2004-05-10 10:45 11M
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_wabaCbr.txt.gz 2004-05-10 10:45 1.6M
chrII_wabaCbr.sql 2013-10-01 12:48 573
chrII_rmsk.txt.gz 2004-05-10 10:45 347K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_mrna.txt.gz 2020-08-21 06:07 30K
chrII_mrna.sql 2020-08-21 06:07 2.4K
chrII_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrII_intronEst.sql 2016-06-05 09:18 2.4K
chrII_gold.txt.gz 2004-05-10 10:45 8.7K
chrII_gold.sql 2013-10-01 12:48 788
chrII_gap.txt.gz 2004-05-10 10:45 93
chrII_gap.sql 2013-10-01 12:48 711
chrII_est.txt.gz 2016-06-05 09:18 2.5M
chrII_est.sql 2016-06-05 09:18 2.4K
chrII_chainSelfLink.txt.gz 2004-05-21 05:05 9.3M
chrII_chainSelfLink.sql 2013-10-01 12:48 584
chrII_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrII_chainSelf.sql 2013-10-01 12:48 861
chrII_chainCb1Link.txt.gz 2004-05-10 10:44 9.1M
chrII_chainCb1Link.sql 2013-10-01 12:48 582
chrII_chainCb1.txt.gz 2004-05-10 10:44 3.5M
chrII_chainCb1.sql 2013-10-01 12:48 859
chrII_blastzCb1.txt.gz 2004-05-10 10:44 10M
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_wabaCbr.txt.gz 2004-05-10 10:44 2.2M
chrIII_wabaCbr.sql 2013-10-01 12:48 575
chrIII_rmsk.txt.gz 2004-05-10 10:44 392K
chrIII_rmsk.sql 2013-10-01 12:48 1.1K
chrIII_mrna.txt.gz 2020-08-21 06:07 40K
chrIII_mrna.sql 2020-08-21 06:07 2.4K
chrIII_intronEst.txt.gz 2016-06-05 09:18 1.9M
chrIII_intronEst.sql 2016-06-05 09:18 2.4K
chrIII_gold.txt.gz 2004-05-10 10:44 6.9K
chrIII_gold.sql 2013-10-01 12:48 790
chrIII_gap.txt.gz 2004-05-10 10:44 123
chrIII_gap.sql 2013-10-01 12:48 713
chrIII_est.txt.gz 2016-06-05 09:18 2.3M
chrIII_est.sql 2016-06-05 09:18 2.4K
chrIII_chainSelfLink.txt.gz 2004-05-21 05:05 11M
chrIII_chainSelfLink.sql 2013-10-01 12:48 586
chrIII_chainSelf.txt.gz 2004-05-21 05:06 1.4M
chrIII_chainSelf.sql 2013-10-01 12:48 863
chrIII_chainCb1Link.txt.gz 2004-05-10 10:43 8.6M
chrIII_chainCb1Link.sql 2013-10-01 12:48 584
chrIII_chainCb1.txt.gz 2004-05-10 10:43 3.6M
chrIII_chainCb1.sql 2013-10-01 12:48 861
chrIII_blastzCb1.txt.gz 2004-05-10 10:43 10M
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
c_briggsae_pwMaf.txt.gz 2004-09-28 10:05 1.6M
c_briggsae_pwMaf.sql 2013-10-01 12:48 666
blatFr1.txt.gz 2004-05-10 10:43 1.6M
blatFr1.sql 2013-10-01 12:48 1.3K
blastHg16KG.txt.gz 2004-09-28 10:05 600K
blastHg16KG.sql 2013-10-01 12:48 1.3K
bigFiles.txt.gz 2024-12-08 03:29 33
bigFiles.sql 2024-12-08 03:29 1.4K
axtNetCb1.txt.gz 2004-05-10 10:43 1.6M
axtNetCb1.sql 2013-10-01 12:48 661
augustusGene.txt.gz 2015-07-26 11:22 1.3M
augustusGene.sql 2015-07-26 11:22 1.9K
all_mrna.txt.gz 2020-08-21 06:07 309K
all_mrna.sql 2020-08-21 06:07 2.4K
all_est.txt.gz 2016-06-05 09:18 14M
all_est.sql 2016-06-05 09:18 2.4K