This directory contains a dump of the UCSC genome annotation
database for the Mar. 2004 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS120/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ce2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely available for public use.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-28 03:28 33
bigFiles.sql 2024-04-28 03:28 1.4K
tableList.txt.gz 2024-04-28 03:28 6.7K
tableList.sql 2024-04-28 03:28 1.6K
tableDescriptions.txt.gz 2024-04-27 02:03 6.4K
tableDescriptions.sql 2024-04-27 02:03 1.5K
hgFindSpec.txt.gz 2023-03-28 13:47 1.1K
hgFindSpec.sql 2023-03-28 13:47 1.8K
trackDb.txt.gz 2023-03-28 13:47 24K
trackDb.sql 2023-03-28 13:47 2.1K
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 1.0K
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
trackDb_pushedout.txt.gz 2021-12-27 12:21 24K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
gbLoaded.txt.gz 2020-08-21 06:44 217K
gbLoaded.sql 2020-08-21 06:44 1.7K
xenoRefSeqAli.txt.gz 2020-08-21 06:44 1.7M
xenoRefSeqAli.sql 2020-08-21 06:44 2.1K
refSeqAli.txt.gz 2020-08-21 06:44 2.7M
refSeqAli.sql 2020-08-21 06:44 2.4K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 828K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
xenoRefFlat.txt.gz 2020-08-21 06:44 1.5M
xenoRefFlat.sql 2020-08-21 06:44 1.7K
xenoRefGene.txt.gz 2020-08-21 06:44 1.7M
xenoRefGene.sql 2020-08-21 06:44 1.9K
refFlat.txt.gz 2020-08-21 06:39 2.1M
refFlat.sql 2020-08-21 06:39 1.9K
refGene.txt.gz 2020-08-21 06:36 1.9M
refGene.sql 2020-08-21 06:36 1.8K
all_mrna.txt.gz 2020-08-21 06:07 309K
all_mrna.sql 2020-08-21 06:07 2.4K
chrX_mrna.txt.gz 2020-08-21 06:07 47K
chrX_mrna.sql 2020-08-21 06:07 2.4K
chrIII_mrna.txt.gz 2020-08-21 06:07 40K
chrIII_mrna.sql 2020-08-21 06:07 2.4K
chrIV_mrna.txt.gz 2020-08-21 06:07 112K
chrIV_mrna.sql 2020-08-21 06:07 2.4K
chrII_mrna.txt.gz 2020-08-21 06:07 30K
chrII_mrna.sql 2020-08-21 06:07 2.4K
chrI_mrna.txt.gz 2020-05-07 17:18 40K
chrI_mrna.sql 2020-05-07 17:18 2.4K
chrV_mrna.txt.gz 2018-01-07 06:38 40K
chrV_mrna.sql 2018-01-07 06:38 2.4K
estOrientInfo.txt.gz 2016-06-05 09:18 4.0M
estOrientInfo.sql 2016-06-05 09:18 1.9K
chrX_intronEst.txt.gz 2016-06-05 09:18 1.4M
chrX_intronEst.sql 2016-06-05 09:18 2.4K
chrX_est.txt.gz 2016-06-05 09:18 1.8M
chrX_est.sql 2016-06-05 09:18 2.4K
chrV_intronEst.txt.gz 2016-06-05 09:18 1.8M
chrV_intronEst.sql 2016-06-05 09:18 2.4K
chrV_est.txt.gz 2016-06-05 09:18 2.2M
chrV_est.sql 2016-06-05 09:18 2.4K
chrM_est.txt.gz 2016-06-05 09:18 50K
chrM_est.sql 2016-06-05 09:18 2.4K
chrII_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrII_intronEst.sql 2016-06-05 09:18 2.4K
chrIII_intronEst.txt.gz 2016-06-05 09:18 1.9M
chrIV_intronEst.txt.gz 2016-06-05 09:18 1.7M
chrIII_intronEst.sql 2016-06-05 09:18 2.4K
chrIV_intronEst.sql 2016-06-05 09:18 2.4K
chrIII_est.txt.gz 2016-06-05 09:18 2.3M
chrIII_est.sql 2016-06-05 09:18 2.4K
chrIV_est.txt.gz 2016-06-05 09:18 2.2M
chrIV_est.sql 2016-06-05 09:18 2.4K
chrII_est.txt.gz 2016-06-05 09:18 2.5M
chrII_est.sql 2016-06-05 09:18 2.4K
chrI_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrI_intronEst.sql 2016-06-05 09:18 2.4K
all_est.txt.gz 2016-06-05 09:18 14M
chrI_est.txt.gz 2016-06-05 09:18 2.9M
all_est.sql 2016-06-05 09:18 2.4K
chrI_est.sql 2016-06-05 09:18 2.4K
microsat.txt.gz 2015-08-23 12:09 3.0K
microsat.sql 2015-08-23 12:09 1.5K
augustusGene.txt.gz 2015-07-26 11:22 1.3M
augustusGene.sql 2015-07-26 11:22 1.9K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
wormP2P.sql 2013-10-01 12:48 353
wabaCbr.sql 2013-10-01 12:48 832
twinscanPep.sql 2013-10-01 12:48 337
twinscan.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.1K
seq.sql 2013-10-01 12:48 596
sangerToRefSeq.sql 2013-10-01 12:48 379
sangerToPfam.sql 2013-10-01 12:48 368
sangerToKim.sql 2013-10-01 12:48 373
sangerPep.sql 2013-10-01 12:48 333
sangerLinks.sql 2013-10-01 12:48 426
sangerIsoforms.sql 2013-10-01 12:48 403
sangerGenefinder.sql 2013-10-01 12:48 1.1K
sangerGene.sql 2013-10-01 12:48 833
sangerCanonical.sql 2013-10-01 12:48 610
sangerBlastTab.sql 2013-10-01 12:48 806
rnaCluster.sql 2013-10-01 12:48 953
picTar.sql 2013-10-01 12:48 747
phastConsElements.sql 2013-10-01 12:48 651
phastCons.sql 2013-10-01 12:48 891
orfToGene.sql 2013-10-01 12:48 371
netCb1.sql 2013-10-01 12:48 1.3K
mmBlastTab.sql 2013-10-01 12:48 798
miRNA.sql 2013-10-01 12:48 776
kimExpDistance.sql 2013-10-01 12:48 390
geneidPep.sql 2013-10-01 12:48 324
geneid.sql 2013-10-01 12:48 1.0K
gc5Base.sql 2013-10-01 12:48 896
extFile.sql 2013-10-01 12:48 441
chromInfo.sql 2013-10-01 12:48 401
chrX_wabaCbr.sql 2013-10-01 12:48 571
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrX_gold.sql 2013-10-01 12:48 786
chrX_gap.sql 2013-10-01 12:48 709
chrX_chainSelfLink.sql 2013-10-01 12:48 582
chrX_chainSelf.sql 2013-10-01 12:48 859
chrX_chainCb1Link.sql 2013-10-01 12:48 580
chrX_chainCb1.sql 2013-10-01 12:48 857
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_wabaCbr.sql 2013-10-01 12:48 571
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrV_gold.sql 2013-10-01 12:48 786
chrV_gap.sql 2013-10-01 12:48 709
chrV_chainSelfLink.sql 2013-10-01 12:48 582
chrV_chainSelf.sql 2013-10-01 12:48 859
chrV_chainCb1Link.sql 2013-10-01 12:48 580
chrV_chainCb1.sql 2013-10-01 12:48 857
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_wabaCbr.sql 2013-10-01 12:48 571
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrM_gold.sql 2013-10-01 12:48 786
chrM_gap.sql 2013-10-01 12:48 709
chrM_chainCb1Link.sql 2013-10-01 12:48 580
chrM_chainCb1.sql 2013-10-01 12:48 857
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrI_wabaCbr.sql 2013-10-01 12:48 571
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrI_chainSelfLink.sql 2013-10-01 12:48 582
chrI_chainSelf.sql 2013-10-01 12:48 859
chrI_chainCb1Link.sql 2013-10-01 12:48 571
chrI_chainCb1.sql 2013-10-01 12:48 857
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_wabaCbr.sql 2013-10-01 12:48 573
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_gold.sql 2013-10-01 12:48 788
chrIV_gap.sql 2013-10-01 12:48 711
chrIV_chainSelfLink.sql 2013-10-01 12:48 584
chrIV_chainSelf.sql 2013-10-01 12:48 861
chrIV_chainCb1Link.sql 2013-10-01 12:48 582
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_wabaCbr.sql 2013-10-01 12:48 573
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrII_gold.sql 2013-10-01 12:48 788
chrII_gap.sql 2013-10-01 12:48 711
chrII_chainSelfLink.sql 2013-10-01 12:48 584
chrII_chainSelf.sql 2013-10-01 12:48 861
chrII_chainCb1Link.sql 2013-10-01 12:48 582
chrII_chainCb1.sql 2013-10-01 12:48 859
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_wabaCbr.sql 2013-10-01 12:48 575
chrIII_rmsk.sql 2013-10-01 12:48 1.1K
chrIII_gold.sql 2013-10-01 12:48 790
chrIII_gap.sql 2013-10-01 12:48 713
chrIII_chainSelfLink.sql 2013-10-01 12:48 586
chrIII_chainSelf.sql 2013-10-01 12:48 863
chrIII_chainCb1Link.sql 2013-10-01 12:48 584
chrIII_chainCb1.sql 2013-10-01 12:48 861
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
c_briggsae_pwMaf.sql 2013-10-01 12:48 666
blatFr1.sql 2013-10-01 12:48 1.3K
blastHg16KG.sql 2013-10-01 12:48 1.3K
chrI_gold.sql 2013-10-01 12:48 786
chrI_gap.sql 2013-10-01 12:48 709
chrIV_chainCb1.sql 2013-10-01 12:48 859
axtNetCb1.sql 2013-10-01 12:48 661
history.txt.gz 2010-07-04 14:53 1.0K
history.sql 2010-07-04 14:53 1.5K
drBlastTab.txt.gz 2010-04-04 10:26 291K
drBlastTab.sql 2010-04-04 10:26 1.8K
chrM_mrna.txt.gz 2008-03-18 03:55 34
chrM_mrna.sql 2008-03-18 03:55 2.2K
chrM_intronEst.txt.gz 2008-03-18 03:55 39
chrM_intronEst.sql 2008-03-18 03:55 2.2K
dmBlastTab.txt.gz 2007-08-30 18:04 111K
dmBlastTab.sql 2007-08-30 18:04 1.6K
hgBlastTab.txt.gz 2007-04-08 09:42 121K
hgBlastTab.sql 2007-04-08 09:42 1.6K
rnBlastTab.txt.gz 2006-07-22 11:29 236K
rnBlastTab.sql 2006-07-22 11:29 1.6K
mmBlastTab.txt.gz 2006-05-26 05:31 280K
picTar.txt.gz 2006-04-28 03:42 117K
wormP2P.txt.gz 2005-06-16 04:54 473K
geneidPep.txt.gz 2005-03-26 05:08 4.8M
geneid.txt.gz 2005-03-26 05:08 1.3M
phastConsElements.txt.gz 2004-09-28 10:05 1.0M
phastCons.txt.gz 2004-09-28 10:05 2.3M
c_briggsae_pwMaf.txt.gz 2004-09-28 10:05 1.6M
blastHg16KG.txt.gz 2004-09-28 10:05 600K
extFile.txt.gz 2004-09-28 10:05 295
sangerToRefSeq.txt.gz 2004-06-07 07:35 110K
sangerToPfam.txt.gz 2004-06-07 07:35 69K
sangerToKim.txt.gz 2004-06-07 07:35 100K
sangerIsoforms.txt.gz 2004-06-07 07:35 106K
sangerCanonical.txt.gz 2004-06-07 07:35 341K
sangerBlastTab.txt.gz 2004-06-07 07:35 19M
kimExpDistance.txt.gz 2004-06-07 07:34 118M
chrI_chainCb1Link.txt.gz 2004-06-01 07:23 8.2M
sangerLinks.txt.gz 2004-05-27 05:10 539K
sangerPep.txt.gz 2004-05-27 05:10 4.8M
sangerGene.txt.gz 2004-05-27 05:10 1.2M
chrX_chainSelf.txt.gz 2004-05-21 05:06 874K
chrV_chainSelf.txt.gz 2004-05-21 05:06 1.5M
chrI_chainSelf.txt.gz 2004-05-21 05:06 1.1M
chrIV_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrII_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrIII_chainSelf.txt.gz 2004-05-21 05:06 1.4M
chrX_chainSelfLink.txt.gz 2004-05-21 05:06 3.3M
chrV_chainSelfLink.txt.gz 2004-05-21 05:06 10M
chrI_chainSelfLink.txt.gz 2004-05-21 05:05 7.9M
chrIV_chainSelfLink.txt.gz 2004-05-21 05:05 7.0M
chrII_chainSelfLink.txt.gz 2004-05-21 05:05 9.3M
chrIII_chainSelfLink.txt.gz 2004-05-21 05:05 11M
sangerGenefinder.txt.gz 2004-05-12 05:11 1.2M
wabaCbr.txt.gz 2004-05-10 10:51 130M
twinscanPep.txt.gz 2004-05-10 10:48 4.3M
twinscan.txt.gz 2004-05-10 10:48 1.1M
simpleRepeat.txt.gz 2004-05-10 10:48 822K
seq.txt.gz 2004-05-10 10:48 232K
rnaCluster.txt.gz 2004-05-10 10:48 349K
orfToGene.txt.gz 2004-05-10 10:48 103K
netCb1.txt.gz 2004-05-10 10:48 4.4M
miRNA.txt.gz 2004-05-10 10:48 2.3K
gc5Base.txt.gz 2004-05-10 10:48 385K
chromInfo.txt.gz 2004-05-10 10:48 140
chrX_wabaCbr.txt.gz 2004-05-10 10:48 1.0M
chrX_rmsk.txt.gz 2004-05-10 10:48 289K
chrX_gold.txt.gz 2004-05-10 10:48 11K
chrX_gap.txt.gz 2004-05-10 10:48 33
chrX_chainCb1Link.txt.gz 2004-05-10 10:48 5.3M
chrX_chainCb1.txt.gz 2004-05-10 10:48 1.7M
chrX_blastzCb1.txt.gz 2004-05-10 10:48 6.0M
chrV_wabaCbr.txt.gz 2004-05-10 10:48 1.8M
chrV_rmsk.txt.gz 2004-05-10 10:48 456K
chrV_gold.txt.gz 2004-05-10 10:48 12K
chrV_gap.txt.gz 2004-05-10 10:48 33
chrV_chainCb1Link.txt.gz 2004-05-10 10:47 13M
chrV_chainCb1.txt.gz 2004-05-10 10:47 5.2M
chrV_blastzCb1.txt.gz 2004-05-10 10:47 15M
chrM_wabaCbr.txt.gz 2004-05-10 10:47 412
chrM_rmsk.txt.gz 2004-05-10 10:47 662
chrM_gold.txt.gz 2004-05-10 10:47 64
chrM_gap.txt.gz 2004-05-10 10:47 33
chrM_chainCb1Link.txt.gz 2004-05-10 10:47 2.0K
chrM_chainCb1.txt.gz 2004-05-10 10:47 393
chrM_blastzCb1.txt.gz 2004-05-10 10:47 2.1K
chrI_wabaCbr.txt.gz 2004-05-10 10:46 1.5M
chrI_rmsk.txt.gz 2004-05-10 10:46 409K
chrI_gold.txt.gz 2004-05-10 10:46 7.9K
chrI_gap.txt.gz 2004-05-10 10:46 33
chrI_chainCb1.txt.gz 2004-05-10 10:46 3.2M
chrI_blastzCb1.txt.gz 2004-05-10 10:46 9.6M
chrIV_wabaCbr.txt.gz 2004-05-10 10:46 2.5M
chrIV_rmsk.txt.gz 2004-05-10 10:46 381K
chrIV_gold.txt.gz 2004-05-10 10:46 8.7K
chrIV_gap.txt.gz 2004-05-10 10:46 34
chrIV_chainCb1Link.txt.gz 2004-05-10 10:45 10M
chrIV_chainCb1.txt.gz 2004-05-10 10:45 3.8M
chrIV_blastzCb1.txt.gz 2004-05-10 10:45 11M
chrII_wabaCbr.txt.gz 2004-05-10 10:45 1.6M
chrII_rmsk.txt.gz 2004-05-10 10:45 347K
chrII_gold.txt.gz 2004-05-10 10:45 8.7K
chrII_gap.txt.gz 2004-05-10 10:45 93
chrII_chainCb1Link.txt.gz 2004-05-10 10:44 9.1M
chrII_chainCb1.txt.gz 2004-05-10 10:44 3.5M
chrII_blastzCb1.txt.gz 2004-05-10 10:44 10M
chrIII_wabaCbr.txt.gz 2004-05-10 10:44 2.2M
chrIII_rmsk.txt.gz 2004-05-10 10:44 392K
chrIII_gold.txt.gz 2004-05-10 10:44 6.9K
chrIII_gap.txt.gz 2004-05-10 10:44 123
chrIII_chainCb1Link.txt.gz 2004-05-10 10:43 8.6M
chrIII_chainCb1.txt.gz 2004-05-10 10:43 3.6M
chrIII_blastzCb1.txt.gz 2004-05-10 10:43 10M
blatFr1.txt.gz 2004-05-10 10:43 1.6M
axtNetCb1.txt.gz 2004-05-10 10:43 1.6M