This directory contains reciprocal-best netted chains for ce11-panRed1.

 - ce11.panRed1.rbest.net.gz: ce11-referenced recip.best net to panRed1.
 - ce11.panRed1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from ce11 to panRed1 through the recip.best net.

 - panRed1.ce11.rbest.net.gz: panRed1-referenced recip.best net.
 - panRed1.ce11.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.ce11.panRed1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
Parent Directory - panRed1.ce11.rbest.net.gz 2015-07-02 11:46 671K panRed1.ce11.rbest.chain.gz 2015-07-02 11:46 472K md5sum.txt 2015-07-02 11:46 244 ce11.panRed1.rbest.net.gz 2015-07-02 11:46 714K ce11.panRed1.rbest.chain.gz 2015-07-02 11:46 473K axtRBestNet/ 2015-07-02 11:46 -