This directory contains sequence for the C. briggsae assembly (cb1, version cb25.agp8) deposited into Wormbase as of 11 July 2002. cb1.2bit - contains the complete C. briggsae/cb1 genome sequence in the 2bit file format. While we are providing the .2bit for this assembly, we will continue to use the .nib files in the Genome Browser. Repeats from RepeatMasker and Tandem Repeats Finder (with period of 12 or less) are shown in lower case; non-repeating sequence is shown in upper case. The utility program, twoBitToFa (available from the kent src tree), can be used to extract .fa file(s) from this file. A pre-compiled version of the command line tool can be found at: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ See also: http://genome.ucsc.edu/admin/git.html http://genome.ucsc.edu/admin/jk-install.html ---------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/cbJul2002/sanger/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) ------------------------------------------------------------------ The C. briggsae sequence is made freely available to the community by the Genome Sequencing Center at the WUSTL School of Medicine. Please see the WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use restrictions and citation information.
Name Last modified Size Description
Parent Directory - cb1.2bit 2014-05-05 13:38 26M cb1.2bit.md5 2014-05-07 15:21 43 cb25.agp8.agp.gz 2002-07-11 00:00 148K cb25.agp8.contigs.fasta.gz 2002-07-11 00:00 31M cb25.agp8.contigs.fasta.qual.gz 2002-07-11 00:00 14M cb25.agp8.fasta.gz 2002-07-11 00:00 30M cb25.agp8.gff.tar.gz 2003-03-07 16:40 12M cb25.agp8.reads.placed.gz 2002-07-11 00:00 34M cb25.agp8.supercontigs.fasta.gz 2002-07-11 00:00 31M cb25.agp8.supercontigs.fasta.qual.gz 2002-07-11 00:00 14M