This directory contains reciprocal-best netted chains for canFam3-rheMac3.

 - canFam3.rheMac3.rbest.net.gz: canFam3-referenced recip.best net to rheMac3.
 - canFam3.rheMac3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from canFam3 to rheMac3 through the recip.best net.

 - rheMac3.canFam3.rbest.net.gz: rheMac3-referenced recip.best net.
 - rheMac3.canFam3.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/canFam3.rheMac3.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      rheMac3.canFam3.rbest.net.gz   2015-09-29 12:25  147M  
      rheMac3.canFam3.rbest.chain.gz 2015-09-29 12:27   81M  
      md5sum.txt                     2015-09-29 12:31  256   
      canFam3.rheMac3.rbest.net.gz   2015-09-29 12:31  134M  
      canFam3.rheMac3.rbest.chain.gz 2015-09-29 12:28   81M  
      axtRBestNet/                   2015-09-29 13:26    -