This directory contains the May 2005 assembly of the dog genome
(UCSC version canFam2) produced by the Broad Institute at MIT.  

Files included in this directory:

chr*.fa.gz: compressed FASTA sequence of each chromosome.
    Repeats (from RepeatMasker and Tandem Repeat Finder) 
    are in lower case while non-repeating sequence is in upper case.
    May 3 2005 (open-3-1-0) version of RepeatMasker;
    RepBase libraries: RepBase Update 9.11, RM database version 20050112.

md5sum.txt: checksums of files in this directory.


-------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/canFam2/chromosomes. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)


The dog genome sequence is made freely available by the Dog Genome Sequencing
Project. Please cite the following publication when using these data:

Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype
structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.

      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2005-12-05 17:32 1.8K chrX.fa.gz 2005-12-05 17:24 38M chrUn.fa.gz 2005-12-05 17:32 19M chrM.fa.gz 2005-12-05 17:23 5.4K chr38.fa.gz 2005-12-05 17:31 7.4M chr37.fa.gz 2005-12-05 17:31 9.7M chr36.fa.gz 2005-12-05 17:31 9.6M chr35.fa.gz 2005-12-05 17:31 8.3M chr34.fa.gz 2005-12-05 17:31 13M chr33.fa.gz 2005-12-05 17:31 9.8M chr32.fa.gz 2005-12-05 17:30 12M chr31.fa.gz 2005-12-05 17:30 12M chr30.fa.gz 2005-12-05 17:30 13M chr29.fa.gz 2005-12-05 17:30 13M chr28.fa.gz 2005-12-05 17:30 13M chr27.fa.gz 2005-12-05 17:29 14M chr26.fa.gz 2005-12-05 17:29 12M chr25.fa.gz 2005-12-05 17:29 16M chr24.fa.gz 2005-12-05 17:29 15M chr23.fa.gz 2005-12-05 17:28 16M chr22.fa.gz 2005-12-05 17:28 19M chr21.fa.gz 2005-12-05 17:28 16M chr20.fa.gz 2005-12-05 17:27 18M chr19.fa.gz 2005-12-05 17:27 17M chr18.fa.gz 2005-12-05 17:27 17M chr17.fa.gz 2005-12-05 17:27 20M chr16.fa.gz 2005-12-05 17:26 18M chr15.fa.gz 2005-12-05 17:26 20M chr14.fa.gz 2005-12-05 17:26 19M chr13.fa.gz 2005-12-05 17:25 20M chr12.fa.gz 2005-12-05 17:25 23M chr11.fa.gz 2005-12-05 17:24 23M chr10.fa.gz 2005-12-05 17:24 22M chr9.fa.gz 2005-12-05 17:23 19M chr8.fa.gz 2005-12-05 17:23 23M chr7.fa.gz 2005-12-05 17:22 25M chr6.fa.gz 2005-12-05 17:22 24M chr5.fa.gz 2005-12-05 17:21 28M chr4.fa.gz 2005-12-05 17:21 28M chr3.fa.gz 2005-12-05 17:20 29M chr2.fa.gz 2005-12-05 17:20 27M chr1.fa.gz 2005-12-05 17:20 38M