This directory contains the Jul. 2004 assembly of the dog genome
(UCSC version canFam1) produced by the Broad Institute at MIT.  

Files included in this directory:

chr*.fa.zip: compressed FASTA sequence of each chromosome.
    Repeats (from RepeatMasker and Tandem Repeat Finder) 
    are in lower case while non-repeating sequence is in upper case.
    RepeatMasker March 2004 version with RepBase libraries:
    RepBase Update 8.12, RM database version 20040306.

-------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/canFam1/chromosomes. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)


The dog genome sequence is made freely available by the Dog Genome Sequencing
Project. Please cite the following publication when using these data:

Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype
structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.

      Name                    Last modified      Size  Description
Parent Directory - md5sum.txt 2004-07-07 17:24 1.9K chrM.fa.zip 2004-07-07 17:17 5.5K chr38.fa.zip 2004-07-07 17:11 7.3M chr35.fa.zip 2004-07-07 17:09 8.3M chr37.fa.zip 2004-07-07 17:10 9.6M chr36.fa.zip 2004-07-07 17:10 9.7M chr33.fa.zip 2004-07-07 17:08 9.8M chr26.fa.zip 2004-07-07 17:03 12M chr31.fa.zip 2004-07-07 17:07 12M chr32.fa.zip 2004-07-07 17:08 12M chr28.fa.zip 2004-07-07 17:04 12M chr30.fa.zip 2004-07-07 17:07 13M chr29.fa.zip 2004-07-07 17:05 13M chr34.fa.zip 2004-07-07 17:09 13M chr27.fa.zip 2004-07-07 17:04 14M chr24.fa.zip 2004-07-07 17:02 15M chr21.fa.zip 2004-07-07 16:59 16M chr9.fa.zip 2004-07-07 17:17 16M chr25.fa.zip 2004-07-07 17:02 16M chr23.fa.zip 2004-07-07 17:01 16M chr19.fa.zip 2004-07-07 16:57 17M chr16.fa.zip 2004-07-07 16:54 18M chr20.fa.zip 2004-07-07 16:59 18M chr14.fa.zip 2004-07-07 16:52 19M chr22.fa.zip 2004-07-07 17:00 19M chr18.fa.zip 2004-07-07 16:56 20M chr13.fa.zip 2004-07-07 16:52 20M chr17.fa.zip 2004-07-07 16:55 20M chr15.fa.zip 2004-07-07 16:53 20M chrUn.fa.zip 2004-07-07 17:18 21M chr10.fa.zip 2004-07-07 16:49 22M chr12.fa.zip 2004-07-07 16:51 23M chr11.fa.zip 2004-07-07 16:50 23M chr8.fa.zip 2004-07-07 17:16 23M chr6.fa.zip 2004-07-07 17:14 24M chr7.fa.zip 2004-07-07 17:15 25M chr2.fa.zip 2004-07-07 16:58 26M chr4.fa.zip 2004-07-07 17:12 28M chr5.fa.zip 2004-07-07 17:13 28M chr3.fa.zip 2004-07-07 17:06 29M chr1.fa.zip 2004-07-07 16:48 38M chrX.fa.zip 2004-07-07 17:19 38M