This directory contains reciprocal-best netted chains for calJac1-rheMac2. - calJac1.rheMac2.rbest.net.gz: calJac1-referenced recip.best net to rheMac2. - calJac1.rheMac2.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from calJac1 to rheMac2 through the recip.best net. - rheMac2.calJac1.rbest.net.gz: rheMac2-referenced recip.best net. - rheMac2.calJac1.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/calJac1.rheMac2.rbest.axt.gz: chained and netted alignments, i.e. the best chains in the Marmoset genome, with gaps in the best chains filled in by next-best chains where possible. Only alignments that are reciprocal best are kept. The axt format is described in http://genome.ucsc.edu/goldenPath/help/axt.html .
Name Last modified Size Description
Parent Directory - axtRBestNet/ 2008-04-22 11:32 - calJac1.rheMac2.rbest.chain.gz 2007-12-21 14:33 55M calJac1.rheMac2.rbest.net.gz 2007-12-21 14:35 82M md5sum.txt 2007-12-21 14:35 256 rheMac2.calJac1.rbest.chain.gz 2007-12-21 14:31 55M rheMac2.calJac1.rbest.net.gz 2007-12-21 14:29 105M