This directory contains reciprocal-best netted chains for calJac1-ponAbe2. - calJac1.ponAbe2.rbest.net.gz: calJac1-referenced recip.best net to ponAbe2. - calJac1.ponAbe2.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from calJac1 to ponAbe2 through the recip.best net. - ponAbe2.calJac1.rbest.net.gz: ponAbe2-referenced recip.best net. - ponAbe2.calJac1.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/calJac1.ponAbe2.rbest.axt.gz: chained and netted alignments, i.e. the best chains in the Marmoset genome, with gaps in the best chains filled in by next-best chains where possible. Only alignments that are reciprocal best are kept. The axt format is described in http://genome.ucsc.edu/goldenPath/help/axt.html .
Name Last modified Size Description
Parent Directory - axtRBestNet/ 2008-04-22 11:31 - md5sum.txt 2007-12-21 14:27 256 calJac1.ponAbe2.rbest.chain.gz 2007-12-21 14:24 58M ponAbe2.calJac1.rbest.chain.gz 2007-12-21 14:23 58M calJac1.ponAbe2.rbest.net.gz 2007-12-21 14:27 83M ponAbe2.calJac1.rbest.net.gz 2007-12-21 14:21 111M