This directory contains reciprocal-best netted chains for calJac1-panTro2.

 - calJac1.panTro2.rbest.net.gz: calJac1-referenced recip.best net to panTro2.
 - calJac1.panTro2.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from calJac1 to panTro2 through the recip.best net.

 - panTro2.calJac1.rbest.net.gz: panTro2-referenced recip.best net.
 - panTro2.calJac1.rbest.chain.gz: recip.best "liftOver" chains.
 - axtRBestNet/calJac1.panTro2.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Marmoset genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in http://genome.ucsc.edu/goldenPath/help/axt.html .
	     

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      axtRBestNet/                   2008-04-22 11:30    -   
      md5sum.txt                     2007-12-14 15:42  256   
      calJac1.panTro2.rbest.net.gz   2007-12-14 15:42   80M  
      calJac1.panTro2.rbest.chain.gz 2007-12-14 15:40   55M  
      panTro2.calJac1.rbest.chain.gz 2007-12-14 15:39   55M  
      panTro2.calJac1.rbest.net.gz   2007-12-14 15:37  106M