This directory contains reciprocal-best netted chains for calJac1-panTro2.

 - calJac1-referenced net to panTro2.
 - calJac1.panTro2.rbest.chain.gz: chains extracted from the
   net.  These can be passed to the liftOver program to translate coords
   from calJac1 to panTro2 through the net.

 - panTro2-referenced net.
 - panTro2.calJac1.rbest.chain.gz: "liftOver" chains.
 - axtRBestNet/calJac1.panTro2.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Marmoset genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in .
      Name                           Last modified      Size  Description
Parent Directory - axtRBestNet/ 2008-04-22 11:30 - calJac1.panTro2.rbest.chain.gz 2007-12-14 15:40 55M 2007-12-14 15:42 80M md5sum.txt 2007-12-14 15:42 256 panTro2.calJac1.rbest.chain.gz 2007-12-14 15:39 55M 2007-12-14 15:37 106M