This directory contains reciprocal-best netted chains for calJac1-hg18. - calJac1.hg18.rbest.net.gz: calJac1-referenced recip.best net to hg18. - calJac1.hg18.rbest.chain.gz: chains extracted from the recip.best net. These can be passed to the liftOver program to translate coords from calJac1 to hg18 through the recip.best net. - hg18.calJac1.rbest.net.gz: hg18-referenced recip.best net. - hg18.calJac1.rbest.chain.gz: recip.best "liftOver" chains. - axtRBestNet/calJac1.hg18.rbest.axt.gz: chained and netted alignments, i.e. the best chains in the Marmoset genome, with gaps in the best chains filled in by next-best chains where possible. Only alignments that are reciprocal best are kept. The axt format is described in http://genome.ucsc.edu/goldenPath/help/axt.html .
Name Last modified Size Description
Parent Directory - axtRBestNet/ 2008-04-22 10:32 - calJac1.hg18.rbest.chain.gz 2007-12-14 15:39 56M calJac1.hg18.rbest.net.gz 2007-12-14 15:41 81M hg18.calJac1.rbest.chain.gz 2007-12-14 15:38 56M hg18.calJac1.rbest.net.gz 2007-12-14 15:36 108M md5sum.txt 2007-12-14 15:41 244