This directory contains reciprocal-best netted chains for calJac1-canFam2.

 - calJac1-referenced net to canFam2.
 - calJac1.canFam2.rbest.chain.gz: chains extracted from the
   net.  These can be passed to the liftOver program to translate coords
   from calJac1 to canFam2 through the net.

 - canFam2-referenced net.
 - canFam2.calJac1.rbest.chain.gz: "liftOver" chains.
 - axtRBestNet/calJac1.canFam2.rbest.axt.gz: chained and netted alignments,
   i.e. the best chains in the Marmoset genome, with gaps in the best
   chains filled in by next-best chains where possible.  Only alignments
   that are reciprocal best are kept.  The axt format is
   described in .
      Name                           Last modified      Size  Description
Parent Directory - axtRBestNet/ 2008-04-22 11:28 - calJac1.canFam2.rbest.chain.gz 2007-12-21 14:34 81M 2007-12-21 14:38 143M canFam2.calJac1.rbest.chain.gz 2007-12-21 14:32 81M 2007-12-21 14:29 144M md5sum.txt 2007-12-21 14:38 256