This directory contains a dump of the UCSC genome annotation database for
the Mar. 2006 assembly of the C. remanei genome (caeRem2, WUSTL School of 
Medicine GSC C. remanei 1.0). The annotations were generated by UCSC
and collaborators worldwide.

This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. remanei genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis+remanei.

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=caeRem2
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

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If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/caeRem2/database/. To download multiple 
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

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The C. remanei sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
      Name                          Last modified      Size  Description
Parent Directory - bigFiles.txt.gz 2022-08-14 03:06 33 chromInfo.txt.gz 2007-08-03 15:31 70 grp.txt.gz 2014-03-02 03:40 208 history.txt.gz 2007-08-03 15:33 507 hgFindSpec.txt.gz 2021-12-27 12:22 581 chromInfo.sql 2007-08-03 15:31 1.2K windowmaskerSdust.sql 2007-08-03 15:34 1.3K bigFiles.sql 2022-08-14 03:06 1.4K grp.sql 2014-03-02 03:40 1.4K tableDescriptions.sql 2019-07-21 03:41 1.4K history.sql 2007-08-03 15:33 1.4K ctgPos2.sql 2007-08-03 15:31 1.4K chrUn_chainCb3Link.sql 2007-08-03 15:26 1.4K chrUn_chainCe4Link.sql 2007-08-03 15:30 1.4K chrUn_chainCaePb1Link.sql 2007-08-03 15:12 1.4K chrUn_chainPriPac1Link.sql 2007-08-03 15:31 1.4K microsat.sql 2015-08-23 11:01 1.5K chrUn_gap.sql 2007-08-03 15:31 1.5K tableList.sql 2022-08-14 03:06 1.6K gbLoaded.sql 2020-08-21 00:04 1.6K chrUn_gold.sql 2007-08-03 15:31 1.6K chrUn_chainCb3.sql 2007-08-03 15:25 1.7K chrUn_chainCe4.sql 2007-08-03 15:29 1.7K chrUn_chainCaePb1.sql 2007-08-03 15:06 1.7K chrUn_chainPriPac1.sql 2007-08-03 15:31 1.7K tRNAs.sql 2012-04-22 19:16 1.7K gc5Base.sql 2007-08-03 15:33 1.7K xenoRefFlat.sql 2020-08-20 23:58 1.7K hgFindSpec.sql 2021-12-27 12:22 1.8K estOrientInfo.sql 2016-06-05 09:11 1.8K mrnaOrientInfo.sql 2016-05-15 07:46 1.8K chrUn_rmsk.sql 2007-08-03 15:31 1.9K xenoRefGene.sql 2020-08-20 23:58 1.9K augustusGene.sql 2015-07-26 10:40 1.9K simpleRepeat.sql 2007-08-03 15:34 2.0K trackDb.sql 2021-12-27 12:22 2.1K all_est.sql 2016-06-05 09:11 2.1K all_mrna.sql 2016-05-15 07:46 2.1K intronEst.sql 2016-06-05 09:11 2.1K xenoRefSeqAli.sql 2020-08-21 00:04 2.1K blastCe4SG.sql 2007-08-03 15:06 2.1K microsat.txt.gz 2015-08-23 11:01 2.2K netCb3.sql 2007-08-03 15:33 2.2K netCe4.sql 2007-08-03 15:34 2.2K netCaePb1.sql 2007-08-03 15:33 2.2K netPriPac1.sql 2007-08-03 15:34 2.2K xenoMrna.sql 2016-02-21 10:50 2.3K tableList.txt.gz 2022-08-14 03:06 2.7K mrnaOrientInfo.txt.gz 2016-05-15 07:46 4.5K tableDescriptions.txt.gz 2019-07-21 03:41 5.0K all_mrna.txt.gz 2016-05-15 07:46 15K trackDb.txt.gz 2021-12-27 12:22 16K tRNAs.txt.gz 2012-04-22 19:16 23K gbLoaded.txt.gz 2020-08-21 00:04 43K chrUn_gold.txt.gz 2007-08-03 15:31 162K estOrientInfo.txt.gz 2016-06-05 09:11 270K chrUn_gap.txt.gz 2007-08-03 15:31 348K ctgPos2.txt.gz 2007-08-03 15:31 373K chrUn_rmsk.txt.gz 2007-08-03 15:31 616K gc5Base.txt.gz 2007-08-03 15:33 706K intronEst.txt.gz 2016-06-05 09:11 1.0M netPriPac1.txt.gz 2007-08-03 15:34 1.1M simpleRepeat.txt.gz 2007-08-03 15:34 1.2M all_est.txt.gz 2016-06-05 09:11 1.3M blastCe4SG.txt.gz 2007-08-03 15:06 1.8M augustusGene.txt.gz 2015-07-26 10:40 2.1M chrUn_chainPriPac1.txt.gz 2007-08-03 15:31 3.2M netCe4.txt.gz 2007-08-03 15:34 4.1M netCb3.txt.gz 2007-08-03 15:34 5.1M chrUn_chainCe4.txt.gz 2007-08-03 15:29 6.7M netCaePb1.txt.gz 2007-08-03 15:33 6.7M windowmaskerSdust.txt.gz 2007-08-03 15:34 7.3M chrUn_chainPriPac1Link.txt.gz 2007-08-03 15:31 8.8M xenoRefFlat.txt.gz 2020-08-20 23:58 10M xenoRefGene.txt.gz 2020-08-20 23:58 12M xenoRefSeqAli.txt.gz 2020-08-21 00:04 12M chrUn_chainCe4Link.txt.gz 2007-08-03 15:30 32M chrUn_chainCb3.txt.gz 2007-08-03 15:26 42M xenoMrna.txt.gz 2016-02-21 10:50 89M chrUn_chainCb3Link.txt.gz 2007-08-03 15:28 131M chrUn_chainCaePb1.txt.gz 2007-08-03 15:09 199M chrUn_chainCaePb1Link.txt.gz 2007-08-03 15:18 471M