This directory contains a dump of the UCSC genome annotation database
for the Mar. 2005 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau2 BCM HGSC Btau_2.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau2/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
all_est.sql 2016-06-05 09:00 2.3K
all_est.txt.gz 2016-06-05 09:00 65M
all_mrna.sql 2020-08-20 22:23 2.3K
all_mrna.txt.gz 2020-08-20 22:23 1.8M
augustusGene.sql 2015-07-26 10:13 1.9K
augustusGene.txt.gz 2015-07-26 10:13 2.3M
bigFiles.sql 2024-11-17 03:33 1.4K
bigFiles.txt.gz 2024-11-17 03:33 33
blastHg18KG.sql 2007-03-01 07:13 2.1K
blastHg18KG.txt.gz 2007-03-01 07:13 2.9M
chainHg18.sql 2013-10-01 12:48 880
chainHg18.txt.gz 2006-04-16 06:25 36M
chainHg18Link.sql 2013-10-01 12:48 579
chainHg18Link.txt.gz 2006-04-16 06:29 441M
chainMm8.sql 2013-10-01 12:48 812
chainMm8.txt.gz 2006-05-10 06:30 53M
chainMm8Link.sql 2013-10-01 12:48 577
chainMm8Link.txt.gz 2006-05-10 06:37 440M
chainRn4.sql 2006-06-21 06:33 1.6K
chainRn4.txt.gz 2006-06-21 06:34 57M
chainRn4Link.sql 2006-06-21 06:34 1.4K
chainRn4Link.txt.gz 2006-06-21 06:41 455M
chromInfo.sql 2013-10-01 12:48 396
chromInfo.txt.gz 2005-10-05 09:02 279K
contigOrient.sql 2013-10-01 12:48 686
contigOrient.txt.gz 2005-10-05 09:03 1.5M
cpgIslandExt.sql 2013-10-01 12:48 751
cpgIslandExt.txt.gz 2005-10-05 09:03 2.0M
cpgIslandExtUnmasked.sql 2014-06-01 08:19 1.7K
cpgIslandExtUnmasked.txt.gz 2014-06-01 08:19 2.1M
estOrientInfo.sql 2016-06-05 08:59 1.9K
estOrientInfo.txt.gz 2016-06-05 09:00 21M
gap.sql 2013-10-01 12:48 634
gap.txt.gz 2005-10-05 09:03 6.2M
gbLoaded.sql 2020-08-20 22:45 1.7K
gbLoaded.txt.gz 2020-08-20 22:45 207K
gc5Base.sql 2013-10-01 12:48 891
gc5Base.txt.gz 2005-10-05 09:05 14M
geneid.sql 2013-10-01 12:48 1.0K
geneid.txt.gz 2005-10-28 05:23 3.7M
geneidPep.sql 2013-10-01 12:48 328
geneidPep.txt.gz 2005-10-28 05:23 7.9M
genscan.sql 2013-10-01 12:48 748
genscan.txt.gz 2005-10-05 09:05 3.2M
genscanPep.sql 2013-10-01 12:48 330
genscanPep.txt.gz 2005-10-05 09:05 11M
gold.sql 2013-10-01 12:48 711
gold.txt.gz 2005-10-05 09:06 11M
grp.sql 2014-03-02 03:37 1.4K
grp.txt.gz 2014-03-02 03:37 223
hgFindSpec.sql 2023-03-28 13:46 1.8K
hgFindSpec.txt.gz 2023-03-28 13:46 871
history.sql 2013-10-01 12:48 537
history.txt.gz 2005-10-05 09:06 279
intronEst.sql 2016-06-05 08:59 2.3K
intronEst.txt.gz 2016-06-05 08:59 33M
mgcFullMrna.sql 2020-03-01 04:51 2.3K
mgcFullMrna.txt.gz 2020-03-01 04:51 950K
mgcGenes.sql 2020-03-01 04:51 1.9K
mgcGenes.txt.gz 2020-03-01 04:51 822K
mrnaOrientInfo.sql 2020-08-20 22:45 1.9K
mrnaOrientInfo.txt.gz 2020-08-20 22:45 704K
netHg18.sql 2013-10-01 12:48 1.3K
netHg18.txt.gz 2006-04-16 06:34 69M
netMm8.sql 2013-10-01 12:48 1.3K
netMm8.txt.gz 2006-05-10 06:44 54M
netRn4.sql 2006-06-21 06:46 2.2K
netRn4.txt.gz 2006-06-21 06:47 52M
quality.sql 2013-10-01 12:48 892
quality.txt.gz 2005-10-05 09:08 62M
refFlat.sql 2020-08-20 22:45 1.9K
refFlat.txt.gz 2020-08-20 22:45 1.4M
refGene.sql 2020-08-20 22:45 2.2K
refGene.txt.gz 2020-08-20 22:45 1.6M
refSeqAli.sql 2020-08-20 22:45 2.3K
refSeqAli.txt.gz 2020-08-20 22:45 1.6M
rmsk.sql 2013-10-01 12:48 1.0K
rmsk.txt.gz 2005-10-05 09:11 140M
sgpGene.sql 2013-10-01 12:48 1.0K
sgpGene.txt.gz 2005-12-31 06:16 2.4M
simpleRepeat.sql 2013-10-01 12:48 1.0K
simpleRepeat.txt.gz 2005-10-05 09:14 10M
tableDescriptions.sql 2024-11-16 02:03 1.5K
tableDescriptions.txt.gz 2024-11-16 02:03 5.2K
tableList.sql 2024-11-17 03:33 1.6K
tableList.txt.gz 2024-11-17 03:33 3.1K
trackDb.sql 2023-03-28 13:46 2.1K
trackDb.txt.gz 2023-03-28 13:46 27K
xenoMrna.sql 2013-11-03 07:21 2.1K
xenoMrna.txt.gz 2013-11-03 07:21 33
xenoRefFlat.sql 2020-08-20 22:45 1.9K
xenoRefFlat.txt.gz 2020-08-20 22:45 37M
xenoRefGene.sql 2020-08-20 22:45 1.8K
xenoRefGene.txt.gz 2020-08-20 22:45 35M
xenoRefSeqAli.sql 2020-08-20 22:45 2.4K
xenoRefSeqAli.txt.gz 2020-08-20 22:45 45M